Query 003236
Match_columns 837
No_of_seqs 1241 out of 2953
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 19:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 6E-44 1.3E-48 369.7 26.4 308 505-837 126-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.5E-42 3.2E-47 359.5 25.9 289 546-837 106-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-40 2.4E-45 350.1 24.5 285 548-837 168-458 (459)
4 KOG0286 G-protein beta subunit 100.0 7.7E-38 1.7E-42 315.4 34.9 292 543-837 43-343 (343)
5 KOG0272 U4/U6 small nuclear ri 100.0 5.3E-38 1.1E-42 330.0 22.3 271 502-796 183-458 (459)
6 KOG0265 U5 snRNP-specific prot 100.0 5.3E-36 1.1E-40 303.4 28.6 288 547-835 39-334 (338)
7 KOG0318 WD40 repeat stress pro 100.0 3E-34 6.5E-39 308.3 37.3 339 493-837 58-558 (603)
8 KOG0279 G protein beta subunit 100.0 3E-34 6.4E-39 288.2 32.9 283 547-837 7-311 (315)
9 KOG0266 WD40 repeat-containing 100.0 1.3E-33 2.9E-38 324.2 41.3 286 548-837 151-452 (456)
10 cd00200 WD40 WD40 domain, foun 100.0 1.4E-33 3E-38 297.0 37.9 284 549-837 3-289 (289)
11 KOG0315 G-protein beta subunit 100.0 2.7E-34 5.9E-39 283.9 29.5 268 568-837 11-286 (311)
12 KOG0285 Pleiotropic regulator 100.0 1.6E-34 3.5E-39 297.5 26.5 289 543-837 139-437 (460)
13 KOG0295 WD40 repeat-containing 100.0 6.8E-35 1.5E-39 301.7 23.3 289 545-837 98-404 (406)
14 KOG0318 WD40 repeat stress pro 100.0 3.6E-33 7.9E-38 300.0 35.8 293 541-837 176-600 (603)
15 KOG0315 G-protein beta subunit 100.0 5.8E-33 1.3E-37 274.5 31.6 289 505-818 9-309 (311)
16 KOG0284 Polyadenylation factor 100.0 4.2E-35 9E-40 306.8 17.2 277 555-837 96-378 (464)
17 KOG0273 Beta-transducin family 100.0 3.1E-33 6.7E-38 297.4 30.0 316 507-837 192-521 (524)
18 KOG0279 G protein beta subunit 100.0 1.2E-32 2.5E-37 276.7 29.4 275 505-798 27-313 (315)
19 KOG0645 WD40 repeat protein [G 100.0 5.9E-32 1.3E-36 270.6 34.1 283 545-837 4-309 (312)
20 KOG0273 Beta-transducin family 100.0 7.5E-33 1.6E-37 294.5 28.7 282 548-837 172-480 (524)
21 KOG0293 WD40 repeat-containing 100.0 1.5E-33 3.3E-38 294.9 22.2 291 541-837 210-511 (519)
22 KOG0282 mRNA splicing factor [ 100.0 8.9E-34 1.9E-38 302.8 18.9 290 546-837 205-503 (503)
23 KOG0291 WD40-repeat-containing 100.0 3.4E-31 7.3E-36 294.6 38.6 320 503-837 105-506 (893)
24 KOG0291 WD40-repeat-containing 100.0 2.1E-31 4.5E-36 296.3 36.1 289 544-837 296-610 (893)
25 KOG0296 Angio-associated migra 100.0 1.2E-31 2.5E-36 278.0 31.6 310 502-837 72-396 (399)
26 PLN00181 protein SPA1-RELATED; 100.0 6.4E-31 1.4E-35 322.8 40.8 284 551-837 479-791 (793)
27 KOG0286 G-protein beta subunit 100.0 4.8E-31 1E-35 266.4 31.9 277 481-796 57-343 (343)
28 KOG0263 Transcription initiati 100.0 6.8E-32 1.5E-36 303.8 28.1 276 547-827 370-703 (707)
29 KOG0319 WD40-repeat-containing 100.0 3.4E-31 7.3E-36 294.8 28.7 288 546-837 314-617 (775)
30 KOG0263 Transcription initiati 100.0 2.4E-31 5.2E-36 299.4 27.0 252 499-755 383-651 (707)
31 KOG0319 WD40-repeat-containing 100.0 1.7E-30 3.8E-35 289.2 28.7 316 499-837 110-575 (775)
32 KOG0284 Polyadenylation factor 100.0 8E-32 1.7E-36 282.3 16.0 269 505-797 107-379 (464)
33 KOG0295 WD40 repeat-containing 100.0 1.6E-30 3.4E-35 269.4 23.6 278 496-797 110-405 (406)
34 KOG0316 Conserved WD40 repeat- 100.0 6.4E-30 1.4E-34 251.0 26.3 280 547-836 9-296 (307)
35 KOG0306 WD40-repeat-containing 100.0 5E-30 1.1E-34 285.3 28.4 281 549-837 367-662 (888)
36 KOG0296 Angio-associated migra 100.0 1.1E-29 2.4E-34 263.4 27.6 285 547-837 56-354 (399)
37 KOG0276 Vesicle coat complex C 100.0 5.6E-30 1.2E-34 279.6 26.3 282 549-835 7-295 (794)
38 KOG0306 WD40-repeat-containing 100.0 2.4E-29 5.2E-34 279.8 31.7 309 506-836 77-577 (888)
39 KOG0281 Beta-TrCP (transducin 100.0 2.7E-31 5.9E-36 272.4 14.9 267 552-837 194-475 (499)
40 KOG0643 Translation initiation 100.0 3.2E-29 6.9E-34 250.3 28.8 281 550-836 5-314 (327)
41 cd00200 WD40 WD40 domain, foun 100.0 4E-28 8.7E-33 255.3 35.4 267 506-796 21-289 (289)
42 KOG0276 Vesicle coat complex C 100.0 8.5E-29 1.8E-33 270.4 29.6 272 500-793 19-294 (794)
43 KOG1407 WD40 repeat protein [F 100.0 7.9E-29 1.7E-33 246.9 26.8 282 549-836 14-308 (313)
44 KOG0266 WD40 repeat-containing 100.0 1.2E-28 2.6E-33 283.2 32.5 280 497-798 162-454 (456)
45 KOG0278 Serine/threonine kinas 100.0 7E-30 1.5E-34 252.5 18.6 279 550-836 9-294 (334)
46 KOG0275 Conserved WD40 repeat- 100.0 5.4E-30 1.2E-34 260.6 16.2 280 553-837 211-507 (508)
47 KOG0281 Beta-TrCP (transducin 100.0 3.5E-30 7.6E-35 264.3 13.3 267 505-803 206-482 (499)
48 KOG0288 WD40 repeat protein Ti 100.0 1.1E-29 2.5E-34 266.6 17.0 283 547-837 167-459 (459)
49 KOG0285 Pleiotropic regulator 100.0 4.8E-29 1E-33 257.2 21.2 245 586-837 140-387 (460)
50 KOG1446 Histone H3 (Lys4) meth 100.0 4.7E-27 1E-31 241.0 33.0 283 546-836 5-300 (311)
51 KOG0292 Vesicle coat complex C 100.0 4E-28 8.6E-33 273.3 26.4 282 551-836 5-318 (1202)
52 KOG0645 WD40 repeat protein [G 100.0 2.7E-27 5.8E-32 237.3 29.4 270 506-798 27-311 (312)
53 KOG0265 U5 snRNP-specific prot 100.0 1.2E-27 2.7E-32 242.7 27.4 268 505-796 58-336 (338)
54 KOG0313 Microtubule binding pr 100.0 1.8E-27 3.9E-32 247.9 27.1 278 553-837 103-416 (423)
55 KOG0313 Microtubule binding pr 100.0 3.4E-27 7.3E-32 245.9 27.0 270 503-797 112-417 (423)
56 KOG0277 Peroxisomal targeting 100.0 1.3E-27 2.8E-32 237.4 22.3 276 559-837 12-307 (311)
57 PLN00181 protein SPA1-RELATED; 100.0 2.7E-26 5.8E-31 282.0 39.0 286 497-797 486-792 (793)
58 KOG0268 Sof1-like rRNA process 100.0 1.3E-28 2.9E-33 254.7 15.6 280 547-837 58-343 (433)
59 KOG0772 Uncharacterized conser 100.0 2.6E-27 5.7E-32 254.2 26.0 289 546-836 158-484 (641)
60 KOG0283 WD40 repeat-containing 100.0 1.5E-27 3.2E-32 271.1 25.5 247 546-798 257-576 (712)
61 PTZ00420 coronin; Provisional 100.0 4.4E-26 9.6E-31 263.1 37.8 249 573-821 50-318 (568)
62 KOG0640 mRNA cleavage stimulat 100.0 1.9E-27 4.1E-32 241.4 22.6 287 547-837 104-424 (430)
63 KOG0310 Conserved WD40 repeat- 100.0 6.2E-27 1.3E-31 251.1 26.2 276 555-835 26-305 (487)
64 KOG0282 mRNA splicing factor [ 100.0 2.7E-28 5.9E-33 261.0 15.6 248 587-837 204-460 (503)
65 KOG0316 Conserved WD40 repeat- 100.0 7.6E-27 1.7E-31 229.5 23.9 263 504-792 27-294 (307)
66 KOG0278 Serine/threonine kinas 100.0 1.2E-27 2.7E-32 236.7 18.0 276 502-803 25-302 (334)
67 KOG0274 Cdc4 and related F-box 100.0 1.7E-26 3.8E-31 265.6 30.5 270 553-837 206-480 (537)
68 KOG0293 WD40 repeat-containing 100.0 5E-27 1.1E-31 246.2 21.5 276 502-799 232-514 (519)
69 KOG0289 mRNA splicing factor [ 100.0 2.8E-26 6E-31 242.3 27.2 277 555-836 219-503 (506)
70 PTZ00421 coronin; Provisional 100.0 1.7E-25 3.8E-30 256.9 36.2 264 556-821 21-315 (493)
71 KOG0305 Anaphase promoting com 100.0 3E-26 6.5E-31 254.9 28.4 268 560-837 182-459 (484)
72 KOG0973 Histone transcription 99.9 4.2E-26 9.1E-31 265.0 29.7 279 554-836 12-352 (942)
73 KOG0283 WD40 repeat-containing 99.9 1.8E-26 3.9E-31 262.3 25.7 247 588-837 257-574 (712)
74 KOG0647 mRNA export protein (c 99.9 6.8E-26 1.5E-30 230.2 26.1 270 553-827 25-311 (347)
75 KOG0294 WD40 repeat-containing 99.9 1.5E-25 3.2E-30 228.9 28.1 294 509-818 4-306 (362)
76 KOG0292 Vesicle coat complex C 99.9 6.8E-26 1.5E-30 255.4 27.9 272 502-798 17-321 (1202)
77 KOG0275 Conserved WD40 repeat- 99.9 6E-27 1.3E-31 238.4 16.7 278 502-796 221-507 (508)
78 KOG0300 WD40 repeat-containing 99.9 4.7E-26 1E-30 231.5 22.2 289 544-837 137-474 (481)
79 KOG0310 Conserved WD40 repeat- 99.9 9.2E-26 2E-30 242.2 24.9 240 553-798 66-309 (487)
80 KOG0641 WD40 repeat protein [G 99.9 4.8E-24 1E-28 208.1 34.5 290 543-836 21-346 (350)
81 KOG0274 Cdc4 and related F-box 99.9 2.5E-25 5.5E-30 256.1 30.2 266 505-803 217-487 (537)
82 KOG0308 Conserved WD40 repeat- 99.9 1.6E-26 3.4E-31 254.4 18.8 275 560-837 29-325 (735)
83 KOG1407 WD40 repeat protein [F 99.9 1.3E-25 2.9E-30 224.0 21.5 241 591-835 14-257 (313)
84 KOG0288 WD40 repeat protein Ti 99.9 3.1E-26 6.8E-31 240.8 17.5 266 505-795 186-458 (459)
85 KOG0973 Histone transcription 99.9 3.7E-25 8E-30 257.2 26.9 288 503-801 22-358 (942)
86 KOG0641 WD40 repeat protein [G 99.9 1.2E-23 2.5E-28 205.4 31.9 295 496-798 34-349 (350)
87 KOG0277 Peroxisomal targeting 99.9 2E-25 4.4E-30 221.8 19.8 251 543-797 49-308 (311)
88 PTZ00421 coronin; Provisional 99.9 9.1E-24 2E-28 242.7 36.6 245 549-800 69-333 (493)
89 KOG1408 WD40 repeat protein [F 99.9 6.7E-25 1.4E-29 242.3 25.2 302 535-837 349-711 (1080)
90 KOG1036 Mitotic spindle checkp 99.9 2.3E-24 5E-29 220.1 26.5 268 555-829 13-294 (323)
91 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-23 5.1E-28 224.5 36.1 264 567-837 1-277 (300)
92 KOG2096 WD40 repeat protein [G 99.9 2.3E-24 5E-29 220.0 26.0 285 548-836 79-399 (420)
93 KOG0299 U3 snoRNP-associated p 99.9 1.7E-24 3.6E-29 230.9 24.5 295 495-795 143-453 (479)
94 KOG0640 mRNA cleavage stimulat 99.9 4.7E-25 1E-29 224.1 19.2 292 502-797 120-425 (430)
95 KOG1539 WD repeat protein [Gen 99.9 6.5E-23 1.4E-27 231.4 36.1 290 546-836 193-645 (910)
96 KOG0308 Conserved WD40 repeat- 99.9 1.1E-24 2.4E-29 239.9 21.0 317 504-837 35-391 (735)
97 KOG2055 WD40 repeat protein [G 99.9 7.7E-24 1.7E-28 225.6 25.0 283 554-837 212-510 (514)
98 KOG0639 Transducin-like enhanc 99.9 1.4E-23 3E-28 224.6 26.7 277 553-836 417-701 (705)
99 KOG0301 Phospholipase A2-activ 99.9 1.1E-23 2.4E-28 233.7 26.9 275 546-836 5-285 (745)
100 KOG0299 U3 snoRNP-associated p 99.9 1.4E-23 3E-28 223.9 26.4 279 548-833 135-450 (479)
101 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.3E-22 1.1E-26 214.0 38.9 286 507-819 2-300 (300)
102 KOG0305 Anaphase promoting com 99.9 1.7E-23 3.6E-28 233.1 27.6 239 555-800 217-463 (484)
103 KOG0643 Translation initiation 99.9 2.8E-23 6E-28 208.0 25.3 234 592-829 5-251 (327)
104 PTZ00420 coronin; Provisional 99.9 1E-22 2.2E-27 235.4 33.9 229 547-780 66-318 (568)
105 KOG0772 Uncharacterized conser 99.9 9.7E-24 2.1E-28 226.9 22.9 285 493-795 166-484 (641)
106 KOG1273 WD40 repeat protein [G 99.9 2.2E-23 4.8E-28 212.6 24.3 277 558-837 26-320 (405)
107 KOG0294 WD40 repeat-containing 99.9 5.8E-23 1.3E-27 210.0 25.9 259 570-837 4-279 (362)
108 KOG0301 Phospholipase A2-activ 99.9 3.7E-23 8.1E-28 229.6 25.9 260 507-799 26-289 (745)
109 KOG0268 Sof1-like rRNA process 99.9 3E-24 6.6E-29 222.6 16.1 267 507-801 80-348 (433)
110 KOG0647 mRNA export protein (c 99.9 1.7E-22 3.6E-27 205.7 26.9 276 474-789 22-314 (347)
111 KOG1446 Histone H3 (Lys4) meth 99.9 5.2E-22 1.1E-26 204.0 30.0 247 587-837 4-260 (311)
112 KOG0650 WD40 repeat nucleolar 99.9 4.9E-23 1.1E-27 224.8 23.5 291 541-836 386-732 (733)
113 KOG1332 Vesicle coat complex C 99.9 1.9E-23 4.2E-28 206.8 18.4 247 552-798 8-286 (299)
114 KOG1063 RNA polymerase II elon 99.9 2.1E-22 4.6E-27 223.4 28.3 335 499-837 199-646 (764)
115 KOG1408 WD40 repeat protein [F 99.9 7.9E-23 1.7E-27 226.1 23.9 245 553-800 457-715 (1080)
116 KOG0289 mRNA splicing factor [ 99.9 2.1E-22 4.5E-27 213.1 25.7 270 507-797 232-505 (506)
117 KOG0269 WD40 repeat-containing 99.9 7E-23 1.5E-27 229.7 20.4 274 558-834 42-335 (839)
118 KOG0646 WD40 repeat protein [G 99.9 1.7E-22 3.7E-27 216.1 21.0 230 554-786 80-337 (476)
119 KOG0264 Nucleosome remodeling 99.9 3.7E-22 7.9E-27 213.4 22.7 253 547-799 116-405 (422)
120 KOG1332 Vesicle coat complex C 99.9 1.3E-22 2.9E-27 200.9 17.3 243 594-837 8-284 (299)
121 KOG0264 Nucleosome remodeling 99.9 6.8E-22 1.5E-26 211.3 22.6 242 594-837 121-402 (422)
122 KOG4283 Transcription-coupled 99.9 2.3E-21 4.9E-26 196.3 25.1 283 550-836 38-362 (397)
123 KOG1274 WD40 repeat protein [G 99.9 3.6E-21 7.8E-26 219.8 29.1 276 552-835 10-296 (933)
124 KOG2106 Uncharacterized conser 99.9 7.4E-21 1.6E-25 204.4 29.2 302 509-837 260-624 (626)
125 KOG0321 WD40 repeat-containing 99.9 7.2E-22 1.6E-26 217.5 21.8 276 561-837 55-389 (720)
126 KOG0639 Transducin-like enhanc 99.9 2.8E-21 6E-26 207.0 23.4 236 555-797 465-703 (705)
127 KOG1274 WD40 repeat protein [G 99.9 4.7E-21 1E-25 218.9 26.7 240 595-837 11-260 (933)
128 KOG2048 WD40 repeat protein [G 99.9 3.8E-20 8.3E-25 205.6 32.8 282 545-835 15-315 (691)
129 KOG2445 Nuclear pore complex c 99.9 9.9E-21 2.1E-25 193.2 25.6 257 552-837 10-316 (361)
130 KOG2055 WD40 repeat protein [G 99.9 3.6E-21 7.8E-26 205.3 22.4 277 499-798 218-512 (514)
131 KOG0267 Microtubule severing p 99.9 5.7E-23 1.2E-27 228.7 9.2 239 547-790 20-260 (825)
132 KOG2106 Uncharacterized conser 99.9 2E-19 4.4E-24 193.4 35.7 288 537-837 227-519 (626)
133 KOG0267 Microtubule severing p 99.9 8.1E-23 1.7E-27 227.5 10.1 253 567-830 4-259 (825)
134 KOG1539 WD repeat protein [Gen 99.9 8.1E-20 1.8E-24 206.7 33.3 276 556-837 160-604 (910)
135 KOG1036 Mitotic spindle checkp 99.9 1.6E-20 3.5E-25 192.2 24.3 234 596-837 12-260 (323)
136 KOG0646 WD40 repeat protein [G 99.9 2.2E-20 4.7E-25 200.0 24.1 258 573-837 13-305 (476)
137 KOG1063 RNA polymerase II elon 99.9 4.3E-20 9.4E-25 205.2 26.8 345 475-837 282-761 (764)
138 KOG0300 WD40 repeat-containing 99.9 1.2E-20 2.5E-25 192.5 20.4 257 570-837 127-426 (481)
139 KOG4283 Transcription-coupled 99.9 3.8E-20 8.2E-25 187.5 21.4 208 594-801 40-279 (397)
140 KOG1034 Transcriptional repres 99.9 5.9E-20 1.3E-24 188.9 22.2 285 549-837 32-381 (385)
141 KOG4328 WD40 protein [Function 99.9 1.1E-19 2.4E-24 194.0 24.3 294 542-836 173-492 (498)
142 KOG1538 Uncharacterized conser 99.8 9.2E-20 2E-24 200.5 23.2 270 557-837 14-291 (1081)
143 KOG0269 WD40 repeat-containing 99.8 9.1E-21 2E-25 212.9 15.5 234 505-755 99-342 (839)
144 KOG0302 Ribosome Assembly prot 99.8 7.7E-20 1.7E-24 190.9 21.2 239 552-790 148-431 (440)
145 KOG2919 Guanine nucleotide-bin 99.8 1.7E-19 3.6E-24 185.1 22.9 267 558-829 52-360 (406)
146 KOG0321 WD40 repeat-containing 99.8 1.1E-19 2.3E-24 200.5 22.3 282 503-800 61-393 (720)
147 COG2319 FOG: WD40 repeat [Gene 99.8 2.8E-17 6.1E-22 181.5 41.5 313 502-837 73-398 (466)
148 KOG2048 WD40 repeat protein [G 99.8 2.1E-18 4.5E-23 192.0 31.6 272 505-799 36-320 (691)
149 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-19 2.5E-24 194.7 20.9 258 558-821 37-305 (673)
150 COG2319 FOG: WD40 repeat [Gene 99.8 4.1E-17 8.9E-22 180.2 41.0 284 546-837 146-440 (466)
151 KOG1009 Chromatin assembly com 99.8 6E-19 1.3E-23 186.1 24.3 296 508-835 28-368 (434)
152 KOG0270 WD40 repeat-containing 99.8 1.9E-19 4.1E-24 191.7 20.6 236 566-803 191-454 (463)
153 KOG0307 Vesicle coat complex C 99.8 3.2E-20 7E-25 217.1 16.1 243 556-801 65-330 (1049)
154 KOG1273 WD40 repeat protein [G 99.8 3.8E-19 8.3E-24 181.8 21.6 273 502-799 31-323 (405)
155 KOG0307 Vesicle coat complex C 99.8 2.1E-20 4.5E-25 218.6 12.9 274 560-836 11-324 (1049)
156 KOG4328 WD40 protein [Function 99.8 2.4E-19 5.3E-24 191.4 19.8 256 582-837 171-448 (498)
157 KOG1445 Tumor-specific antigen 99.8 1.2E-18 2.5E-23 191.1 23.8 114 724-837 627-748 (1012)
158 KOG0650 WD40 repeat nucleolar 99.8 4.9E-19 1.1E-23 193.8 20.8 243 589-836 392-677 (733)
159 KOG2096 WD40 repeat protein [G 99.8 1.5E-18 3.2E-23 177.7 22.3 243 591-836 80-357 (420)
160 KOG0302 Ribosome Assembly prot 99.8 9.2E-19 2E-23 182.9 20.7 241 594-836 148-435 (440)
161 KOG4378 Nuclear protein COP1 [ 99.8 2E-18 4.3E-23 185.2 22.9 220 557-780 81-305 (673)
162 KOG0270 WD40 repeat-containing 99.8 1.6E-18 3.5E-23 184.8 19.9 252 503-755 189-451 (463)
163 KOG0322 G-protein beta subunit 99.8 5.7E-19 1.2E-23 177.0 15.1 285 547-837 6-321 (323)
164 KOG4227 WD40 repeat protein [G 99.8 4.1E-18 8.9E-23 178.0 21.6 284 549-837 50-385 (609)
165 KOG0303 Actin-binding protein 99.8 9.8E-18 2.1E-22 176.1 23.3 228 592-820 76-320 (472)
166 PRK11028 6-phosphogluconolacto 99.8 8.5E-17 1.8E-21 177.9 32.1 266 570-837 5-302 (330)
167 PRK11028 6-phosphogluconolacto 99.8 5.1E-16 1.1E-20 171.6 36.9 288 510-817 6-327 (330)
168 KOG0642 Cell-cycle nuclear pro 99.8 2.8E-18 6.2E-23 187.6 16.9 251 548-803 287-566 (577)
169 KOG1188 WD40 repeat protein [G 99.8 1E-17 2.2E-22 173.6 18.0 266 568-837 41-344 (376)
170 KOG0644 Uncharacterized conser 99.8 1.2E-18 2.7E-23 196.3 11.0 274 547-836 182-465 (1113)
171 KOG2445 Nuclear pore complex c 99.8 3.2E-16 7E-21 160.4 26.3 250 501-766 20-331 (361)
172 KOG1334 WD40 repeat protein [G 99.8 5.8E-18 1.2E-22 182.0 13.1 292 545-836 132-463 (559)
173 KOG1517 Guanine nucleotide bin 99.8 1.5E-16 3.3E-21 183.6 25.4 282 553-837 1062-1379(1387)
174 KOG2919 Guanine nucleotide-bin 99.7 4.8E-16 1E-20 159.9 24.2 273 507-789 62-361 (406)
175 KOG0642 Cell-cycle nuclear pro 99.7 4.1E-17 8.9E-22 178.6 16.9 254 499-766 299-571 (577)
176 KOG0290 Conserved WD40 repeat- 99.7 3.8E-16 8.2E-21 158.7 21.9 241 552-795 93-362 (364)
177 KOG1007 WD repeat protein TSSC 99.7 5.4E-16 1.2E-20 157.4 22.8 263 569-835 28-357 (370)
178 KOG1034 Transcriptional repres 99.7 2.7E-16 5.9E-21 162.2 19.9 242 553-798 87-383 (385)
179 KOG1240 Protein kinase contain 99.7 1.1E-15 2.4E-20 179.3 27.3 292 546-837 1039-1431(1431)
180 KOG0303 Actin-binding protein 99.7 2.7E-16 5.9E-21 165.4 20.0 227 547-779 73-320 (472)
181 KOG1587 Cytoplasmic dynein int 99.7 1.4E-15 3.1E-20 174.5 27.6 258 577-837 222-514 (555)
182 KOG0649 WD40 repeat protein [G 99.7 2.6E-15 5.6E-20 149.1 25.6 268 557-836 12-313 (325)
183 KOG1963 WD40 repeat protein [G 99.7 2.7E-15 5.8E-20 172.2 28.5 281 553-837 203-536 (792)
184 KOG1188 WD40 repeat protein [G 99.7 5.8E-16 1.3E-20 160.7 19.1 275 505-798 39-346 (376)
185 PRK01742 tolB translocation pr 99.7 2.4E-15 5.1E-20 172.3 25.9 233 576-820 183-426 (429)
186 KOG1524 WD40 repeat-containing 99.7 6.3E-16 1.4E-20 167.6 19.3 262 553-835 12-282 (737)
187 KOG1007 WD repeat protein TSSC 99.7 1.8E-15 4E-20 153.5 20.8 248 549-798 57-361 (370)
188 KOG0649 WD40 repeat protein [G 99.7 6.1E-15 1.3E-19 146.5 23.4 229 599-836 12-271 (325)
189 KOG1587 Cytoplasmic dynein int 99.7 1.8E-15 3.9E-20 173.6 22.6 246 554-800 241-518 (555)
190 KOG1538 Uncharacterized conser 99.7 1.9E-15 4.1E-20 166.9 21.6 240 547-798 45-293 (1081)
191 KOG0290 Conserved WD40 repeat- 99.7 1.5E-14 3.3E-19 147.0 24.4 283 547-835 37-361 (364)
192 KOG2110 Uncharacterized conser 99.7 1.1E-13 2.3E-18 145.4 30.4 233 555-799 5-249 (391)
193 KOG4497 Uncharacterized conser 99.7 2.7E-14 5.8E-19 147.3 25.3 271 556-832 49-425 (447)
194 PRK03629 tolB translocation pr 99.7 4.2E-14 9E-19 161.9 29.8 234 577-819 179-427 (429)
195 KOG1523 Actin-related protein 99.7 1.2E-14 2.7E-19 149.8 22.3 226 551-779 6-260 (361)
196 PRK01742 tolB translocation pr 99.7 7.2E-15 1.6E-19 168.4 23.1 220 549-779 197-426 (429)
197 KOG2110 Uncharacterized conser 99.7 4.7E-14 1E-18 148.1 26.7 230 597-837 5-246 (391)
198 PF02239 Cytochrom_D1: Cytochr 99.7 1.8E-13 3.9E-18 152.8 33.2 286 546-837 27-345 (369)
199 KOG2321 WD40 repeat protein [G 99.7 2.3E-14 4.9E-19 157.1 24.9 277 553-836 49-340 (703)
200 KOG1310 WD40 repeat protein [G 99.7 9.1E-16 2E-20 166.7 14.0 238 546-803 41-308 (758)
201 KOG2139 WD40 repeat protein [G 99.6 6.1E-14 1.3E-18 146.5 25.4 277 556-836 99-428 (445)
202 KOG1272 WD40-repeat-containing 99.6 7.1E-16 1.5E-20 165.2 11.0 262 558-831 132-401 (545)
203 KOG0771 Prolactin regulatory e 99.6 5.6E-15 1.2E-19 157.6 16.0 194 559-754 148-355 (398)
204 PRK04922 tolB translocation pr 99.6 9.1E-14 2E-18 159.5 27.0 234 577-819 184-432 (433)
205 PRK05137 tolB translocation pr 99.6 2.5E-13 5.3E-18 156.1 29.2 234 577-820 182-433 (435)
206 KOG2111 Uncharacterized conser 99.6 1.3E-12 2.8E-17 135.0 30.2 267 557-833 7-316 (346)
207 KOG4227 WD40 repeat protein [G 99.6 9.6E-14 2.1E-18 145.6 22.1 285 499-797 61-386 (609)
208 KOG1963 WD40 repeat protein [G 99.6 3.7E-13 7.9E-18 154.9 28.6 274 559-836 20-319 (792)
209 PF10282 Lactonase: Lactonase, 99.6 1.5E-11 3.3E-16 136.9 40.1 261 557-817 38-345 (345)
210 KOG1524 WD40 repeat-containing 99.6 1.5E-14 3.3E-19 156.9 15.3 207 568-795 76-283 (737)
211 KOG1445 Tumor-specific antigen 99.6 2.2E-13 4.7E-18 150.2 24.3 237 565-803 589-849 (1012)
212 KOG0644 Uncharacterized conser 99.6 3E-15 6.5E-20 169.4 10.0 270 500-801 196-471 (1113)
213 KOG2394 WD40 protein DMR-N9 [G 99.6 3.6E-13 7.8E-18 146.9 25.4 244 557-818 125-383 (636)
214 PRK02889 tolB translocation pr 99.6 4.3E-13 9.3E-18 153.6 27.6 235 577-820 176-425 (427)
215 KOG1517 Guanine nucleotide bin 99.6 1.8E-13 3.8E-18 158.7 23.5 248 553-801 1107-1384(1387)
216 KOG0771 Prolactin regulatory e 99.6 2.1E-13 4.6E-18 145.6 21.8 191 644-836 148-351 (398)
217 KOG1523 Actin-related protein 99.6 3.4E-13 7.3E-18 139.3 21.8 227 593-820 6-260 (361)
218 KOG1009 Chromatin assembly com 99.6 4.9E-13 1.1E-17 141.9 23.0 290 486-801 57-375 (434)
219 KOG3881 Uncharacterized conser 99.6 2.7E-13 5.8E-18 143.3 21.0 261 554-820 54-342 (412)
220 PRK02889 tolB translocation pr 99.6 1.3E-12 2.7E-17 149.8 27.6 223 550-779 190-425 (427)
221 KOG2315 Predicted translation 99.6 2E-12 4.3E-17 142.4 27.6 267 556-837 35-388 (566)
222 PF10282 Lactonase: Lactonase, 99.5 4.4E-11 9.6E-16 133.2 38.8 268 570-837 2-320 (345)
223 PRK03629 tolB translocation pr 99.5 1.4E-12 3E-17 149.4 26.9 220 551-779 194-428 (429)
224 KOG1354 Serine/threonine prote 99.5 8.2E-13 1.8E-17 137.3 21.8 277 555-836 25-431 (433)
225 PRK04922 tolB translocation pr 99.5 1.1E-12 2.3E-17 150.7 25.3 221 549-778 197-432 (433)
226 KOG2394 WD40 protein DMR-N9 [G 99.5 8.3E-13 1.8E-17 144.1 22.6 170 564-734 182-384 (636)
227 TIGR02800 propeller_TolB tol-p 99.5 3.2E-12 6.9E-17 145.9 28.3 232 577-817 170-416 (417)
228 KOG3881 Uncharacterized conser 99.5 1.1E-12 2.3E-17 138.8 20.6 237 596-837 54-318 (412)
229 PRK05137 tolB translocation pr 99.5 6.4E-12 1.4E-16 144.4 28.8 204 619-830 182-397 (435)
230 PRK00178 tolB translocation pr 99.5 8.7E-12 1.9E-16 143.1 29.6 234 578-820 180-428 (430)
231 PF02239 Cytochrom_D1: Cytochr 99.5 2.5E-11 5.5E-16 135.6 32.1 263 568-837 6-300 (369)
232 KOG2111 Uncharacterized conser 99.5 8.7E-12 1.9E-16 129.0 25.3 231 599-836 7-253 (346)
233 KOG1272 WD40-repeat-containing 99.5 5.2E-14 1.1E-18 151.1 8.5 231 597-837 129-360 (545)
234 KOG4497 Uncharacterized conser 99.5 2.6E-13 5.5E-18 140.1 12.2 221 602-836 13-237 (447)
235 PRK04792 tolB translocation pr 99.5 1.4E-11 3.1E-16 141.7 27.5 233 578-819 199-446 (448)
236 KOG1240 Protein kinase contain 99.5 8.6E-12 1.9E-16 147.2 24.8 251 582-837 1034-1332(1431)
237 KOG2139 WD40 repeat protein [G 99.4 8.6E-12 1.9E-16 130.6 21.5 228 598-831 99-367 (445)
238 KOG1409 Uncharacterized conser 99.4 5.6E-12 1.2E-16 131.4 19.3 252 543-799 12-271 (404)
239 COG5354 Uncharacterized protei 99.4 9.5E-11 2.1E-15 127.8 28.7 272 557-837 73-393 (561)
240 KOG0322 G-protein beta subunit 99.4 2.9E-12 6.2E-17 129.2 15.1 264 507-797 26-322 (323)
241 KOG2321 WD40 repeat protein [G 99.4 1.5E-11 3.3E-16 135.2 21.6 237 595-837 49-300 (703)
242 COG2706 3-carboxymuconate cycl 99.4 1.5E-09 3.3E-14 115.0 35.2 266 553-818 37-345 (346)
243 KOG1334 WD40 repeat protein [G 99.4 2.7E-12 5.9E-17 138.8 14.2 278 502-800 150-468 (559)
244 TIGR02658 TTQ_MADH_Hv methylam 99.4 9.8E-10 2.1E-14 120.6 34.3 256 577-837 27-328 (352)
245 PRK00178 tolB translocation pr 99.4 8.1E-11 1.7E-15 135.1 26.9 222 549-779 192-428 (430)
246 KOG4594 Sequence-specific sing 99.4 2.3E-13 4.9E-18 137.3 4.9 77 4-81 12-92 (354)
247 PRK04792 tolB translocation pr 99.4 7.7E-11 1.7E-15 135.7 26.0 221 550-779 212-447 (448)
248 TIGR02800 propeller_TolB tol-p 99.4 1.3E-10 2.8E-15 132.7 27.4 205 619-831 170-386 (417)
249 PRK01029 tolB translocation pr 99.4 2.3E-10 5.1E-15 130.8 29.2 238 577-821 165-426 (428)
250 KOG1310 WD40 repeat protein [G 99.4 2.3E-12 4.9E-17 140.6 11.9 166 589-754 42-232 (758)
251 PF08662 eIF2A: Eukaryotic tra 99.4 4E-11 8.8E-16 122.1 20.0 146 685-837 8-177 (194)
252 PRK01029 tolB translocation pr 99.4 2E-10 4.3E-15 131.4 27.3 215 619-837 165-401 (428)
253 PF08662 eIF2A: Eukaryotic tra 99.3 1.1E-10 2.4E-15 118.9 21.0 154 560-719 10-185 (194)
254 COG2706 3-carboxymuconate cycl 99.3 3.8E-09 8.3E-14 112.0 32.5 261 576-836 15-318 (346)
255 TIGR03300 assembly_YfgL outer 99.3 4.3E-09 9.3E-14 118.7 33.3 255 566-837 104-377 (377)
256 KOG0974 WD-repeat protein WDR6 99.3 6.7E-11 1.4E-15 138.5 18.6 267 555-837 7-286 (967)
257 KOG4547 WD40 repeat-containing 99.3 5.7E-10 1.2E-14 124.2 24.6 187 565-754 3-221 (541)
258 KOG2314 Translation initiation 99.3 3.9E-10 8.4E-15 123.9 22.4 264 559-831 214-559 (698)
259 KOG4190 Uncharacterized conser 99.2 4E-11 8.8E-16 130.6 12.3 280 547-835 727-1032(1034)
260 KOG2315 Predicted translation 99.2 1.6E-09 3.4E-14 119.9 24.4 248 559-819 129-410 (566)
261 TIGR02658 TTQ_MADH_Hv methylam 99.2 3.4E-08 7.3E-13 108.5 34.1 233 563-805 53-337 (352)
262 KOG0974 WD-repeat protein WDR6 99.2 6.9E-10 1.5E-14 130.2 21.9 145 504-672 143-289 (967)
263 KOG2041 WD40 repeat protein [G 99.2 1.4E-09 3.1E-14 121.9 23.1 276 554-835 13-333 (1189)
264 KOG0280 Uncharacterized conser 99.2 3.8E-10 8.3E-15 115.7 16.7 199 557-755 123-335 (339)
265 COG5354 Uncharacterized protei 99.2 2.5E-09 5.5E-14 116.9 23.7 271 554-837 31-346 (561)
266 TIGR03300 assembly_YfgL outer 99.2 1.7E-08 3.6E-13 113.9 30.7 252 567-837 65-336 (377)
267 PRK04043 tolB translocation pr 99.2 1.9E-08 4.1E-13 114.6 30.7 228 577-816 169-418 (419)
268 KOG0309 Conserved WD40 repeat- 99.2 1.8E-10 3.9E-15 129.7 13.7 280 555-837 24-337 (1081)
269 COG4946 Uncharacterized protei 99.2 2.6E-08 5.5E-13 107.9 29.1 281 534-828 206-507 (668)
270 KOG4547 WD40 repeat-containing 99.2 3.2E-09 6.9E-14 118.3 22.3 188 607-799 3-221 (541)
271 KOG1409 Uncharacterized conser 99.1 1.9E-09 4E-14 112.8 18.5 279 503-799 33-395 (404)
272 PLN02919 haloacid dehalogenase 99.1 3.6E-08 7.8E-13 123.9 33.7 237 559-802 571-892 (1057)
273 KOG1354 Serine/threonine prote 99.1 3.9E-09 8.5E-14 110.3 20.6 239 502-756 33-362 (433)
274 PLN02919 haloacid dehalogenase 99.1 3.8E-08 8.3E-13 123.6 32.3 233 601-837 571-886 (1057)
275 COG5170 CDC55 Serine/threonine 99.1 1.9E-09 4.1E-14 111.1 16.5 239 554-796 25-365 (460)
276 PF04762 IKI3: IKI3 family; I 99.1 1.1E-07 2.4E-12 117.4 33.4 282 553-837 73-454 (928)
277 PRK04043 tolB translocation pr 99.1 6.7E-08 1.5E-12 110.1 28.7 201 619-830 169-388 (419)
278 KOG0280 Uncharacterized conser 99.1 1.4E-08 3E-13 104.5 19.6 241 555-796 69-331 (339)
279 KOG2041 WD40 repeat protein [G 99.0 7.2E-08 1.6E-12 108.6 26.0 307 505-833 25-402 (1189)
280 KOG1064 RAVE (regulator of V-A 99.0 2.2E-09 4.7E-14 130.9 14.2 188 503-721 2217-2407(2439)
281 KOG1064 RAVE (regulator of V-A 99.0 1.6E-09 3.5E-14 132.1 13.1 209 610-837 2181-2396(2439)
282 PF08450 SGL: SMP-30/Gluconola 99.0 9.6E-07 2.1E-11 93.5 32.1 218 601-828 3-244 (246)
283 KOG1912 WD40 repeat protein [G 99.0 8.5E-08 1.8E-12 109.3 23.9 211 543-754 43-305 (1062)
284 KOG4532 WD40-like repeat conta 99.0 6.2E-08 1.4E-12 98.5 20.5 223 608-830 83-323 (344)
285 PF08450 SGL: SMP-30/Gluconola 99.0 2.2E-06 4.9E-11 90.6 33.7 218 560-788 4-245 (246)
286 COG4946 Uncharacterized protei 99.0 2.8E-07 6E-12 100.1 25.9 270 552-837 356-652 (668)
287 KOG1912 WD40 repeat protein [G 98.9 4.3E-08 9.4E-13 111.6 19.7 237 557-799 17-305 (1062)
288 PF13360 PQQ_2: PQQ-like domai 98.9 8E-07 1.7E-11 93.0 27.7 217 575-803 1-235 (238)
289 PRK11138 outer membrane biogen 98.9 8.8E-07 1.9E-11 100.6 29.0 254 567-837 120-392 (394)
290 KOG0309 Conserved WD40 repeat- 98.9 5.7E-09 1.2E-13 117.8 10.6 207 548-754 107-340 (1081)
291 PF04762 IKI3: IKI3 family; I 98.9 1.4E-06 3.1E-11 107.7 31.2 236 596-836 74-376 (928)
292 KOG3914 WD repeat protein WDR4 98.9 3E-08 6.6E-13 106.1 14.3 164 502-681 70-233 (390)
293 KOG0882 Cyclophilin-related pe 98.8 8.1E-09 1.8E-13 111.3 9.1 275 504-809 18-316 (558)
294 KOG1832 HIV-1 Vpr-binding prot 98.8 2.1E-09 4.6E-14 123.0 4.2 264 544-827 1090-1377(1516)
295 KOG4190 Uncharacterized conser 98.8 1.2E-08 2.6E-13 111.6 9.3 206 590-802 728-952 (1034)
296 PRK11138 outer membrane biogen 98.8 2E-06 4.3E-11 97.8 26.1 255 567-837 69-351 (394)
297 PF13360 PQQ_2: PQQ-like domai 98.8 3E-06 6.6E-11 88.6 25.3 211 618-837 2-228 (238)
298 KOG2314 Translation initiation 98.7 2.1E-06 4.5E-11 95.2 24.1 285 503-799 258-574 (698)
299 PF07433 DUF1513: Protein of u 98.7 1.7E-05 3.7E-10 84.7 29.5 230 558-796 7-283 (305)
300 PF00930 DPPIV_N: Dipeptidyl p 98.7 8.3E-06 1.8E-10 91.3 28.6 259 564-828 1-346 (353)
301 PF15492 Nbas_N: Neuroblastoma 98.7 8.3E-06 1.8E-10 84.7 25.9 227 561-803 3-264 (282)
302 KOG4532 WD40-like repeat conta 98.7 2.8E-06 6.1E-11 86.7 20.6 242 495-755 73-333 (344)
303 COG5170 CDC55 Serine/threonine 98.6 1.8E-07 3.8E-12 96.8 11.2 233 596-837 25-307 (460)
304 KOG1645 RING-finger-containing 98.6 1.4E-06 3.1E-11 93.3 18.3 250 579-837 175-459 (463)
305 KOG4714 Nucleoporin [Nuclear s 98.6 5.5E-07 1.2E-11 91.4 13.8 200 506-713 47-255 (319)
306 PRK02888 nitrous-oxide reducta 98.6 1.1E-05 2.3E-10 93.4 25.4 179 648-828 200-450 (635)
307 PF07433 DUF1513: Protein of u 98.6 4.8E-05 1E-09 81.3 28.1 226 599-829 6-276 (305)
308 KOG4714 Nucleoporin [Nuclear s 98.6 6.8E-07 1.5E-11 90.8 13.3 195 558-754 39-255 (319)
309 KOG1645 RING-finger-containing 98.6 1.7E-06 3.6E-11 92.8 16.9 246 546-798 184-461 (463)
310 KOG1920 IkappaB kinase complex 98.6 1E-05 2.2E-10 97.3 25.1 244 555-803 68-327 (1265)
311 KOG3914 WD repeat protein WDR4 98.6 9.7E-07 2.1E-11 94.8 14.7 157 599-756 64-226 (390)
312 PF15492 Nbas_N: Neuroblastoma 98.5 5.4E-05 1.2E-09 78.8 25.6 188 557-755 45-261 (282)
313 PF04053 Coatomer_WDAD: Coatom 98.5 1.1E-05 2.3E-10 92.1 22.6 222 595-836 30-259 (443)
314 PF02897 Peptidase_S9_N: Proly 98.5 0.00032 6.9E-09 80.2 34.2 243 558-805 126-411 (414)
315 KOG1832 HIV-1 Vpr-binding prot 98.5 7.8E-08 1.7E-12 110.5 4.2 200 587-803 1091-1296(1516)
316 KOG2066 Vacuolar assembly/sort 98.5 4.2E-06 9E-11 96.7 18.0 182 597-798 39-233 (846)
317 PF14583 Pectate_lyase22: Olig 98.5 0.00029 6.2E-09 77.6 31.2 269 561-836 41-378 (386)
318 COG3391 Uncharacterized conser 98.5 0.00018 3.9E-09 81.3 30.9 251 579-835 13-279 (381)
319 KOG1275 PAB-dependent poly(A) 98.5 5.2E-06 1.1E-10 96.8 18.3 175 655-837 149-340 (1118)
320 KOG2066 Vacuolar assembly/sort 98.5 4.7E-06 1E-10 96.3 17.5 183 555-754 39-234 (846)
321 PF08513 LisH: LisH; InterPro 98.5 1.9E-07 4.2E-12 62.6 3.7 27 10-36 1-27 (27)
322 cd00216 PQQ_DH Dehydrogenases 98.5 7E-05 1.5E-09 87.5 27.8 258 567-837 61-422 (488)
323 PF06433 Me-amine-dh_H: Methyl 98.4 0.00022 4.9E-09 77.1 28.1 256 577-837 17-318 (342)
324 KOG1275 PAB-dependent poly(A) 98.4 5E-06 1.1E-10 96.9 15.9 181 566-752 146-341 (1118)
325 KOG2695 WD40 repeat protein [G 98.4 6.9E-07 1.5E-11 93.9 8.2 160 657-818 228-401 (425)
326 KOG0882 Cyclophilin-related pe 98.4 1.4E-06 3.1E-11 94.3 10.8 207 595-803 7-236 (558)
327 cd00216 PQQ_DH Dehydrogenases 98.4 0.00037 8.1E-09 81.4 30.5 228 568-803 111-429 (488)
328 KOG2114 Vacuolar assembly/sort 98.3 7.8E-05 1.7E-09 87.1 23.2 205 604-813 30-260 (933)
329 PF11768 DUF3312: Protein of u 98.3 0.00061 1.3E-08 77.5 29.7 90 746-837 237-327 (545)
330 KOG3621 WD40 repeat-containing 98.3 7.5E-05 1.6E-09 85.7 22.5 271 555-835 33-349 (726)
331 KOG2114 Vacuolar assembly/sort 98.3 0.00017 3.6E-09 84.4 25.2 195 557-755 27-245 (933)
332 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00051 1.1E-08 70.4 25.6 143 567-714 23-167 (354)
333 COG0823 TolB Periplasmic compo 98.3 7.4E-05 1.6E-09 85.0 21.7 204 579-790 175-391 (425)
334 PF08596 Lgl_C: Lethal giant l 98.2 0.00011 2.4E-09 82.8 22.1 260 557-829 3-326 (395)
335 PF00400 WD40: WD domain, G-be 98.2 3.8E-06 8.2E-11 61.6 6.8 38 546-583 2-39 (39)
336 KOG3617 WD40 and TPR repeat-co 98.2 1.8E-05 4E-10 91.3 15.3 262 558-828 62-374 (1416)
337 KOG2695 WD40 repeat protein [G 98.2 4E-06 8.6E-11 88.3 9.2 158 561-722 217-386 (425)
338 KOG1920 IkappaB kinase complex 98.2 0.00019 4.1E-09 86.7 23.9 231 596-836 67-319 (1265)
339 KOG3617 WD40 and TPR repeat-co 98.2 1.9E-05 4.2E-10 91.1 14.5 261 559-837 19-331 (1416)
340 PF00400 WD40: WD domain, G-be 98.2 4.9E-06 1.1E-10 61.0 6.4 39 587-625 1-39 (39)
341 COG3391 Uncharacterized conser 98.2 0.00053 1.2E-08 77.5 25.9 220 558-780 76-310 (381)
342 PRK02888 nitrous-oxide reducta 98.2 0.00015 3.2E-09 84.2 21.2 215 563-787 200-450 (635)
343 COG0823 TolB Periplasmic compo 98.2 9.2E-05 2E-09 84.3 18.9 189 633-826 185-386 (425)
344 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.00032 6.9E-09 71.8 19.9 150 647-800 17-167 (354)
345 PF04053 Coatomer_WDAD: Coatom 98.1 0.00049 1.1E-08 78.7 24.0 221 553-798 30-262 (443)
346 PF00780 CNH: CNH domain; Int 98.1 0.002 4.3E-08 69.2 27.7 225 565-805 5-262 (275)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0027 5.9E-08 74.7 30.4 186 567-756 69-336 (527)
348 PF06977 SdiA-regulated: SdiA- 98.1 0.001 2.2E-08 70.1 23.5 199 635-836 16-247 (248)
349 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0024 5.2E-08 71.5 28.1 229 555-788 42-347 (353)
350 PF06433 Me-amine-dh_H: Methyl 98.1 0.003 6.4E-08 68.6 27.2 238 560-806 40-328 (342)
351 PF06977 SdiA-regulated: SdiA- 98.1 0.003 6.6E-08 66.6 26.6 200 548-750 14-247 (248)
352 PF03178 CPSF_A: CPSF A subuni 98.0 0.0025 5.4E-08 70.3 26.5 213 578-795 3-262 (321)
353 PF11768 DUF3312: Protein of u 98.0 0.00079 1.7E-08 76.5 22.4 133 621-755 186-331 (545)
354 PF08596 Lgl_C: Lethal giant l 98.0 0.0012 2.6E-08 74.5 23.6 207 544-753 75-335 (395)
355 KOG1008 Uncharacterized conser 98.0 3.5E-06 7.6E-11 95.0 3.2 197 556-754 57-276 (783)
356 PF03178 CPSF_A: CPSF A subuni 98.0 0.0013 2.8E-08 72.6 23.4 208 620-835 3-261 (321)
357 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.018 3.9E-07 67.8 33.5 149 568-717 121-338 (527)
358 PF00780 CNH: CNH domain; Int 97.9 0.0051 1.1E-07 66.0 25.4 215 607-837 5-253 (275)
359 PF04841 Vps16_N: Vps16, N-ter 97.9 0.021 4.6E-07 65.2 30.9 191 578-780 62-271 (410)
360 KOG1008 Uncharacterized conser 97.8 6E-06 1.3E-10 93.2 1.4 197 598-798 57-275 (783)
361 PF02897 Peptidase_S9_N: Proly 97.8 0.013 2.7E-07 67.1 28.4 221 599-822 125-383 (414)
362 COG5276 Uncharacterized conser 97.8 0.069 1.5E-06 56.2 32.0 270 556-837 87-367 (370)
363 COG3386 Gluconolactonase [Carb 97.8 0.0089 1.9E-07 65.2 24.9 219 602-828 29-274 (307)
364 KOG3621 WD40 repeat-containing 97.7 0.004 8.6E-08 72.0 21.9 139 502-660 41-188 (726)
365 PRK10115 protease 2; Provision 97.7 0.079 1.7E-06 64.6 34.2 238 558-803 129-399 (686)
366 PF08553 VID27: VID27 cytoplas 97.7 0.0048 1E-07 74.4 22.7 140 610-752 494-646 (794)
367 PF14583 Pectate_lyase22: Olig 97.7 0.013 2.9E-07 64.8 24.3 241 583-830 16-303 (386)
368 COG3386 Gluconolactonase [Carb 97.6 0.02 4.3E-07 62.5 23.8 219 561-789 30-276 (307)
369 PF05694 SBP56: 56kDa selenium 97.5 0.033 7.1E-07 62.2 24.6 221 566-788 86-393 (461)
370 COG3490 Uncharacterized protei 97.5 0.017 3.7E-07 60.4 20.0 230 560-796 72-346 (366)
371 KOG1897 Damage-specific DNA bi 97.4 0.31 6.7E-06 58.9 32.8 166 664-835 751-938 (1096)
372 PF04841 Vps16_N: Vps16, N-ter 97.4 0.036 7.9E-07 63.2 25.0 188 620-822 62-272 (410)
373 PRK13616 lipoprotein LpqB; Pro 97.4 0.012 2.5E-07 70.1 21.5 208 576-794 328-564 (591)
374 KOG4640 Anaphase-promoting com 97.4 0.00064 1.4E-08 77.4 9.9 95 555-650 20-115 (665)
375 KOG4499 Ca2+-binding protein R 97.4 0.035 7.7E-07 56.5 20.7 209 609-820 27-264 (310)
376 PF05096 Glu_cyclase_2: Glutam 97.3 0.13 2.7E-06 54.4 25.2 194 588-789 34-251 (264)
377 PRK10115 protease 2; Provision 97.3 0.25 5.5E-06 60.2 31.6 200 598-805 127-353 (686)
378 KOG2395 Protein involved in va 97.3 0.0084 1.8E-07 67.3 16.3 133 694-830 345-492 (644)
379 PRK13616 lipoprotein LpqB; Pro 97.2 0.039 8.6E-07 65.6 22.9 186 639-834 348-563 (591)
380 PRK13684 Ycf48-like protein; P 97.2 0.55 1.2E-05 52.1 30.1 270 555-837 45-329 (334)
381 PF08553 VID27: VID27 cytoplas 97.2 0.022 4.9E-07 68.8 20.1 139 655-797 496-646 (794)
382 PF15390 DUF4613: Domain of un 97.2 0.075 1.6E-06 60.9 22.8 145 556-701 57-220 (671)
383 PF14870 PSII_BNR: Photosynthe 97.2 0.39 8.4E-06 52.3 27.6 270 555-836 16-301 (302)
384 KOG4441 Proteins containing BT 97.1 0.027 5.8E-07 67.0 19.9 230 566-803 284-551 (571)
385 PHA02713 hypothetical protein; 97.0 0.048 1E-06 64.8 21.1 218 578-804 273-539 (557)
386 PF14727 PHTB1_N: PTHB1 N-term 97.0 0.92 2E-05 51.6 32.0 260 567-835 37-356 (418)
387 smart00667 LisH Lissencephaly 97.0 0.001 2.2E-08 46.9 4.2 31 9-39 3-33 (34)
388 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.023 5.1E-07 51.7 13.8 101 558-666 2-109 (111)
389 KOG4441 Proteins containing BT 97.0 0.031 6.8E-07 66.4 18.8 207 620-832 302-534 (571)
390 PF10647 Gmad1: Lipoprotein Lp 97.0 0.2 4.3E-06 53.4 23.1 189 642-830 25-229 (253)
391 PF05694 SBP56: 56kDa selenium 96.9 1 2.2E-05 50.7 30.7 220 608-828 86-392 (461)
392 smart00320 WD40 WD40 repeats. 96.9 0.0021 4.6E-08 44.6 5.4 37 547-583 4-40 (40)
393 COG3204 Uncharacterized protei 96.9 0.14 3E-06 54.3 20.4 164 636-800 81-265 (316)
394 PF07995 GSDH: Glucose / Sorbo 96.9 0.9 2E-05 50.4 28.1 232 558-793 4-330 (331)
395 KOG2395 Protein involved in va 96.9 0.025 5.5E-07 63.6 15.2 142 651-797 344-499 (644)
396 smart00320 WD40 WD40 repeats. 96.8 0.0032 6.9E-08 43.6 5.7 39 587-625 2-40 (40)
397 KOG1897 Damage-specific DNA bi 96.8 2.2 4.8E-05 52.0 34.6 286 496-802 307-619 (1096)
398 PF05096 Glu_cyclase_2: Glutam 96.8 1 2.2E-05 47.8 25.6 180 641-828 45-249 (264)
399 COG3490 Uncharacterized protei 96.7 0.12 2.5E-06 54.4 18.0 170 649-830 44-246 (366)
400 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.3 6.5E-06 55.3 23.0 88 560-649 6-117 (415)
401 COG3204 Uncharacterized protei 96.7 0.4 8.8E-06 50.9 22.1 163 551-714 81-265 (316)
402 COG1520 FOG: WD40-like repeat 96.7 1.6 3.4E-05 49.1 29.3 194 565-766 67-278 (370)
403 COG5276 Uncharacterized conser 96.7 0.96 2.1E-05 48.0 24.1 195 596-800 85-287 (370)
404 PLN00033 photosystem II stabil 96.7 1.7 3.8E-05 49.2 34.8 147 686-836 242-396 (398)
405 KOG4640 Anaphase-promoting com 96.6 0.0074 1.6E-07 69.0 9.4 93 597-692 20-115 (665)
406 KOG2444 WD40 repeat protein [G 96.6 0.0024 5.2E-08 64.8 4.4 140 611-754 32-178 (238)
407 PF07995 GSDH: Glucose / Sorbo 96.5 1 2.3E-05 49.9 25.6 232 599-834 3-330 (331)
408 KOG4499 Ca2+-binding protein R 96.5 0.25 5.5E-06 50.5 18.3 136 597-735 108-264 (310)
409 PF14870 PSII_BNR: Photosynthe 96.5 0.49 1.1E-05 51.5 21.8 153 593-750 140-301 (302)
410 PF02333 Phytase: Phytase; In 96.5 1.5 3.3E-05 49.0 25.8 188 565-755 66-292 (381)
411 TIGR03074 PQQ_membr_DH membran 96.4 0.78 1.7E-05 56.3 25.7 225 567-803 194-482 (764)
412 PHA02713 hypothetical protein; 96.3 0.23 5.1E-06 59.1 20.2 177 653-836 304-530 (557)
413 TIGR03118 PEPCTERM_chp_1 conse 96.3 1.4 3.1E-05 47.2 23.1 197 558-755 25-281 (336)
414 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.27 6E-06 44.8 15.0 95 648-748 10-109 (111)
415 COG4257 Vgb Streptogramin lyas 96.1 2 4.3E-05 45.3 22.7 255 558-818 64-325 (353)
416 KOG2444 WD40 repeat protein [G 96.1 0.0065 1.4E-07 61.7 4.6 136 697-837 33-175 (238)
417 TIGR02604 Piru_Ver_Nterm putat 96.1 2.5 5.4E-05 47.6 26.0 144 556-701 14-202 (367)
418 KOG2079 Vacuolar assembly/sort 96.1 0.06 1.3E-06 65.2 13.1 98 608-706 98-199 (1206)
419 PF10647 Gmad1: Lipoprotein Lp 96.0 1.5 3.3E-05 46.6 22.5 140 599-743 25-184 (253)
420 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 1.3 2.8E-05 50.3 22.1 72 684-755 309-400 (415)
421 PHA03098 kelch-like protein; P 95.7 0.35 7.6E-06 57.3 17.9 155 653-813 343-526 (534)
422 TIGR03074 PQQ_membr_DH membran 95.7 1.3 2.9E-05 54.3 22.6 67 655-721 262-353 (764)
423 PF15390 DUF4613: Domain of un 95.6 0.53 1.1E-05 54.3 17.5 171 641-820 20-213 (671)
424 KOG3630 Nuclear pore complex, 95.6 0.097 2.1E-06 63.8 12.3 141 557-700 102-261 (1405)
425 PLN02153 epithiospecifier prot 95.6 1.2 2.7E-05 49.4 20.8 175 653-830 86-324 (341)
426 KOG3630 Nuclear pore complex, 95.5 0.1 2.2E-06 63.5 11.8 144 599-743 102-262 (1405)
427 COG4257 Vgb Streptogramin lyas 95.5 2.5 5.4E-05 44.6 20.2 211 599-823 63-289 (353)
428 KOG2377 Uncharacterized conser 95.4 1.2 2.7E-05 49.7 18.8 120 554-675 65-189 (657)
429 KOG2079 Vacuolar assembly/sort 95.4 0.23 4.9E-06 60.5 14.3 101 566-670 98-202 (1206)
430 TIGR02604 Piru_Ver_Nterm putat 95.3 0.49 1.1E-05 53.2 16.5 147 683-830 14-204 (367)
431 PHA03098 kelch-like protein; P 95.3 0.52 1.1E-05 55.8 17.5 183 566-755 294-513 (534)
432 PRK13684 Ycf48-like protein; P 95.2 1.8 3.9E-05 48.1 20.2 150 597-752 172-330 (334)
433 COG1520 FOG: WD40-like repeat 95.2 7 0.00015 43.9 28.8 187 610-803 69-273 (370)
434 PF10214 Rrn6: RNA polymerase 95.1 9.1 0.0002 47.6 27.6 177 595-799 77-277 (765)
435 PLN00033 photosystem II stabil 95.0 8.2 0.00018 43.9 30.3 110 682-795 280-396 (398)
436 KOG1898 Splicing factor 3b, su 94.8 15 0.00032 45.5 29.1 165 665-835 855-1044(1205)
437 PF10168 Nup88: Nuclear pore c 94.7 1.8 4E-05 52.7 19.6 26 556-581 85-110 (717)
438 PF03022 MRJP: Major royal jel 94.3 7.3 0.00016 42.2 21.4 165 664-828 35-254 (287)
439 PF14761 HPS3_N: Hermansky-Pud 94.2 2.7 5.8E-05 43.1 16.5 141 610-753 29-214 (215)
440 COG3292 Predicted periplasmic 94.2 3.3 7.1E-05 47.8 18.7 268 555-835 164-443 (671)
441 PF12894 Apc4_WD40: Anaphase-p 94.2 0.12 2.7E-06 39.6 5.4 30 555-584 11-40 (47)
442 PF12234 Rav1p_C: RAVE protein 94.2 1.6 3.5E-05 52.0 17.2 125 544-671 18-156 (631)
443 PRK10350 hypothetical protein; 94.2 0.17 3.8E-06 46.1 7.1 29 68-96 21-50 (145)
444 PHA02790 Kelch-like protein; P 94.1 1.4 2.9E-05 51.6 16.6 141 566-714 271-425 (480)
445 PF10395 Utp8: Utp8 family; I 94.1 10 0.00022 45.3 23.4 123 678-803 125-264 (670)
446 TIGR03548 mutarot_permut cycli 94.1 6.9 0.00015 43.0 21.3 101 653-755 73-196 (323)
447 PF10214 Rrn6: RNA polymerase 94.0 21 0.00046 44.3 28.0 158 553-713 77-277 (765)
448 PLN02153 epithiospecifier prot 93.9 6.7 0.00015 43.5 21.0 64 566-631 32-113 (341)
449 COG5167 VID27 Protein involved 93.9 0.74 1.6E-05 52.0 12.6 141 651-797 478-631 (776)
450 PHA02790 Kelch-like protein; P 93.8 3.2 6.9E-05 48.6 18.7 144 653-803 319-475 (480)
451 KOG1896 mRNA cleavage and poly 93.7 22 0.00047 44.8 25.4 169 663-836 1004-1210(1366)
452 PLN02193 nitrile-specifier pro 93.6 9.5 0.00021 44.5 22.3 192 608-805 175-417 (470)
453 PF10433 MMS1_N: Mono-function 93.6 19 0.00041 42.3 30.6 246 564-819 219-503 (504)
454 PLN02193 nitrile-specifier pro 93.5 19 0.00041 42.0 29.0 174 653-830 176-387 (470)
455 TIGR01063 gyrA DNA gyrase, A s 93.5 26 0.00057 43.6 27.0 261 561-826 490-794 (800)
456 COG1506 DAP2 Dipeptidyl aminop 93.4 24 0.00051 42.8 26.4 147 551-702 55-235 (620)
457 PRK14131 N-acetylneuraminic ac 93.4 9 0.0002 43.2 21.0 14 664-677 190-203 (376)
458 KOG2280 Vacuolar assembly/sort 93.4 8.7 0.00019 45.8 20.6 181 577-765 64-255 (829)
459 PF14727 PHTB1_N: PTHB1 N-term 93.1 19 0.00042 41.0 30.4 267 506-799 37-361 (418)
460 COG3823 Glutamine cyclotransfe 93.1 3.3 7E-05 42.1 14.4 176 608-787 55-247 (262)
461 PF14781 BBS2_N: Ciliary BBSom 93.1 2.7 5.9E-05 39.7 13.2 118 602-720 3-133 (136)
462 PF11498 Activator_LAG-3: Tran 93.1 0.027 5.9E-07 59.8 0.0 14 121-134 371-384 (468)
463 KOG1916 Nuclear protein, conta 93.0 0.055 1.2E-06 64.2 2.4 96 576-673 110-215 (1283)
464 smart00036 CNH Domain found in 92.9 17 0.00036 39.8 31.7 234 566-808 12-280 (302)
465 PF10433 MMS1_N: Mono-function 92.9 24 0.00052 41.5 28.9 225 606-836 219-473 (504)
466 PF12234 Rav1p_C: RAVE protein 92.8 4.2 9E-05 48.5 17.4 111 685-797 32-155 (631)
467 PF10168 Nup88: Nuclear pore c 92.7 22 0.00048 43.6 23.9 94 598-714 85-181 (717)
468 TIGR03547 muta_rot_YjhT mutatr 92.7 13 0.00028 41.3 20.8 40 791-830 291-331 (346)
469 COG1770 PtrB Protease II [Amin 92.7 27 0.00059 41.5 24.1 200 599-803 130-353 (682)
470 PF13449 Phytase-like: Esteras 92.6 19 0.00042 39.7 23.2 143 641-785 20-231 (326)
471 KOG1916 Nuclear protein, conta 92.6 0.072 1.6E-06 63.3 2.5 116 550-670 127-264 (1283)
472 TIGR03548 mutarot_permut cycli 92.5 11 0.00024 41.4 19.7 107 566-675 72-198 (323)
473 PRK05560 DNA gyrase subunit A; 92.4 36 0.00079 42.5 28.4 255 562-820 493-792 (805)
474 COG3823 Glutamine cyclotransfe 92.3 5.7 0.00012 40.4 14.9 171 566-742 55-247 (262)
475 PF08728 CRT10: CRT10; InterP 92.1 4.5 9.7E-05 48.8 16.6 101 652-752 113-245 (717)
476 PF12894 Apc4_WD40: Anaphase-p 92.0 0.46 1E-05 36.5 5.5 31 597-627 11-41 (47)
477 COG5167 VID27 Protein involved 91.9 2.7 5.8E-05 47.7 13.5 135 693-830 478-624 (776)
478 COG1506 DAP2 Dipeptidyl aminop 91.9 29 0.00064 42.0 23.9 146 593-743 55-234 (620)
479 TIGR03547 muta_rot_YjhT mutatr 91.7 25 0.00054 39.0 21.9 24 608-631 63-97 (346)
480 KOG2247 WD40 repeat-containing 91.7 0.056 1.2E-06 60.5 0.3 148 599-749 36-184 (615)
481 PRK05560 DNA gyrase subunit A; 91.6 44 0.00095 41.8 25.3 226 606-835 495-768 (805)
482 KOG2377 Uncharacterized conser 91.6 12 0.00027 42.1 17.9 151 560-714 27-187 (657)
483 KOG1983 Tomosyn and related SN 91.5 4.8 0.0001 51.1 17.0 228 557-802 37-268 (993)
484 TIGR03118 PEPCTERM_chp_1 conse 91.5 23 0.00051 38.2 21.5 194 642-837 24-277 (336)
485 PRK14131 N-acetylneuraminic ac 91.2 17 0.00036 41.1 19.7 39 792-830 314-353 (376)
486 PF14781 BBS2_N: Ciliary BBSom 91.1 5.5 0.00012 37.7 12.8 111 688-803 4-130 (136)
487 PF13449 Phytase-like: Esteras 90.9 29 0.00063 38.3 22.7 143 598-742 20-232 (326)
488 PF14761 HPS3_N: Hermansky-Pud 90.9 17 0.00037 37.3 17.0 102 653-755 29-165 (215)
489 KOG2280 Vacuolar assembly/sort 90.8 6.7 0.00015 46.8 15.8 170 663-835 64-242 (829)
490 COG5290 IkappaB kinase complex 90.7 6.6 0.00014 46.9 15.5 96 686-785 250-353 (1243)
491 KOG2247 WD40 repeat-containing 90.4 0.031 6.7E-07 62.4 -3.2 141 685-832 37-181 (615)
492 PF05935 Arylsulfotrans: Aryls 90.4 42 0.00091 39.2 25.6 143 575-723 126-312 (477)
493 PF02333 Phytase: Phytase; In 90.3 36 0.00077 38.3 23.5 181 653-837 68-288 (381)
494 PF07250 Glyoxal_oxid_N: Glyox 89.8 5.8 0.00013 41.8 13.1 129 706-834 48-194 (243)
495 PF08728 CRT10: CRT10; InterP 89.7 6.8 0.00015 47.3 15.1 113 557-670 102-245 (717)
496 PF10395 Utp8: Utp8 family; I 89.6 55 0.0012 39.4 25.7 158 596-755 128-307 (670)
497 PF07569 Hira: TUP1-like enhan 89.3 2.2 4.7E-05 44.4 9.6 66 690-755 18-97 (219)
498 TIGR03032 conserved hypothetic 89.3 37 0.0008 37.0 22.5 105 708-822 189-317 (335)
499 TIGR03606 non_repeat_PQQ dehyd 89.3 48 0.001 38.3 32.1 280 547-834 21-430 (454)
500 KOG1898 Splicing factor 3b, su 88.8 29 0.00062 43.2 19.2 195 578-817 854-1066(1205)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-44 Score=369.75 Aligned_cols=308 Identities=24% Similarity=0.390 Sum_probs=277.5
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
....+++|+-|.++++|+.... .+..+.++|...|.||+|+|||+.||+|+.||.|++||.
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~Te-------------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTE-------------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred CCceEEecCCCceEEeeccCCC-------------------CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 3478899999999999955432 346788999999999999999999999999999999999
Q ss_pred CCCeEE-EEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEE
Q 003236 585 ESFTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (837)
Q Consensus 585 ~t~~~~-~~l~~h~~~I~~l~fsp-----dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llas 658 (837)
++++.+ ..+.+|..+|++++|.| ..++|++++.||.|+|||+..+. ++..+.+|+.+|+|+.|-- ..++++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG--~gliyS 263 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGG--EGLIYS 263 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcC--CceEEe
Confidence 988776 77899999999999976 57799999999999999999755 5899999999999999984 458999
Q ss_pred EeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEe-----------cCCC-------------------------EEEEEE
Q 003236 659 CDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQ-----------PRLG-------------------------RILAAA 701 (837)
Q Consensus 659 gs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~s-----------p~g~-------------------------~llags 701 (837)
++.|++|++|+...|++.+.++.+. .|+.++.+ |.++ .+++|+
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999999998887643 46666655 3333 499999
Q ss_pred cCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003236 702 IENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 702 ~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd 779 (837)
.|.++.+|+.... +++....+|..-|+.+.|+||+++|++++ |..|++||-+++ +.+..|.+|-..|+.++|+.|
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccC
Confidence 9999999997654 68888999999999999999999999999 999999999999 889999999999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 780 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+.|++++.|.+|++||+++.++. .+.+|.+.|.++.|+|||..+++|+.|..++||.
T Consensus 421 sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999987 7889999999999999999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-42 Score=359.46 Aligned_cols=289 Identities=24% Similarity=0.380 Sum_probs=266.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
++-..+.+|.++|.|+.|+|+|+.||+|+.|.++++||+.+..+..++++|..+|.||+|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCC----CCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEE
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspd----g~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llag 700 (837)
..+++...+.+.+|...|++++|.|- ...++++++.||.|+|||+..+.++..+.. ...|+|++|--+ ++|+++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99999888999999999999999873 234788999999999999999999988875 457999999765 789999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc-----------CCCC-------------------------EEEEEe-
Q 003236 701 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS- 743 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s-----------pdg~-------------------------~Lasgs- 743 (837)
+.|++|++|+...+.+..++++|...|+.++++ |.++ .|++|+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999877 2233 499999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCC
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~ 822 (837)
|.++.+|+-.... +++....+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-..|..++|+.|.+
T Consensus 345 d~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 7799999876542 678888999999999999999999999999999999999999988 7889999999999999999
Q ss_pred EEEEEECCCcEEEeC
Q 003236 823 MVASASHDKCVKIWK 837 (837)
Q Consensus 823 ~LaSgs~DG~I~IWd 837 (837)
+|++|+.|.++++||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-40 Score=350.13 Aligned_cols=285 Identities=26% Similarity=0.429 Sum_probs=266.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWD 625 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWD 625 (837)
+..--+-+.+|..+.||.|++.||||+.+|.++||+..+...+.+|.+|.+.|.++.|+|. +..||||+.||+|++|+
T Consensus 168 ~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 168 VCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred hhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 3344477889999999999999999999999999999999999999999999999999996 67899999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCC
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg 704 (837)
+++. .++..+.+|...|..++|+|+|. +|++++.|.+-++||++++..+..... ..+|.+++|.+||..+++|+.|.
T Consensus 248 ~~~e-~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 248 LSQE-TPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS 325 (459)
T ss_pred cCCC-cchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence 9975 46899999999999999999987 666999999999999999887666554 56799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCCE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPS 782 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp-dg~~ 782 (837)
.-+|||++++.++..+.+|...|.+|+|+|+|..|++|+ |++++|||++.. .++..+..|.+.|+.+.|+| .|.+
T Consensus 326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g~f 402 (459)
T KOG0272|consen 326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEGYF 402 (459)
T ss_pred hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCCeE
Confidence 999999999999999999999999999999999999999 999999999987 66899999999999999998 7889
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++.|++++||...++.++ .+.+|++.|.++++++|+.+|+|++.|.+|++|.
T Consensus 403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999988 7889999999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.7e-38 Score=315.42 Aligned_cols=292 Identities=18% Similarity=0.321 Sum_probs=264.5
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 622 (837)
..+..-++|++|.++|.++.|++|.++|++++.||.+.|||.-+...+..+.-...+|..++|+|.++++|.|+.|+...
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 44556689999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEEcCCC--C---ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEec-CCC
Q 003236 623 VWDTENP--D---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP-RLG 695 (837)
Q Consensus 623 IWDl~~~--~---~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp-~g~ 695 (837)
||++.+. + ...+.+.+|.+.+.|+.|.+|+ .|++++.|.++.+||+++++.+..|.. .+.|.++.++| +++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9999854 2 2357789999999999999864 355888899999999999999999985 45699999999 899
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
.+++|+.|+..++||++.+.++..|.+|+..|++|+|.|+|.-+++|+ |++.++||++.... ..+.........|+++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSV 279 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeE
Confidence 999999999999999999999999999999999999999999999999 88999999998732 2223333345679999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|+..|++|++|..|.++.+||.-.++.+ .+.+|++.|+++..+|||.-|+||+.|..|+||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999998888777 8889999999999999999999999999999994
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.3e-38 Score=330.03 Aligned_cols=271 Identities=25% Similarity=0.370 Sum_probs=252.3
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC--CCEEEEEECCCcE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKA 579 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd--g~~Lasgs~Dg~I 579 (837)
+...+..+++||.++.+++|.++.. ..+.+|++|++.|.++.|+|. +..||+|+.||+|
T Consensus 183 fS~ds~~laT~swsG~~kvW~~~~~-------------------~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 183 FSRDSKHLATGSWSGLVKVWSVPQC-------------------NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred eecCCCeEEEeecCCceeEeecCCc-------------------ceeEEEeccccceeeEEEccCCCccceeeeccCCce
Confidence 3445578999999999999966543 457889999999999999996 6689999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
++|++++..++..+.+|...|..++|+|+|++|+|+|.|.+-++||+.++.. +....||...|.+|+|++||. ++++|
T Consensus 244 klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGS-L~~tG 321 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGS-LAATG 321 (459)
T ss_pred eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCc-eeecc
Confidence 9999999999999999999999999999999999999999999999998664 777889999999999999987 88899
Q ss_pred eCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC-CCC
Q 003236 660 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGE 737 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp-dg~ 737 (837)
+.|..-+|||++++.++..+.. ...|..+.|+|+|..+++|+.|++++|||++...++.++.+|.+-|+.|+|+| .|.
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 9999999999999999999886 45799999999999999999999999999999999999999999999999998 788
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 738 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 738 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
+|++++ |++++||..++. .++..+.+|.+.|.++.+++++.+|++++.|.++++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999 999999999888 78999999999999999999999999999999999995
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.3e-36 Score=303.37 Aligned_cols=288 Identities=23% Similarity=0.432 Sum_probs=264.1
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
++-.+.+|.+.|+++.|+|+|.+||+|+.|..|.+|++. ..+...++++|.+.|..+.|.+|++.|++++.|++|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 345678999999999999999999999999999999954 4566678889999999999999999999999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~ 705 (837)
+++++. ++.+.+|...|++++....|..++++++.|+++++||+++..++.++.....++++.|...+..+++|+-|+.
T Consensus 119 ~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 999874 8889999999999998878899999999999999999999999999988899999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCC----CceEEEEEeCC
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTG----NKFHSCVFHPT 779 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~----~~I~sv~fspd 779 (837)
|++||++.....+.+.+|...|+.+..+++|.++.+-+ |.+|++||++..... .++..+.++. .....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999999999999999999999999999999988 999999999875432 4577776654 33577899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 780 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
+.++.+|+.|..+++||.....++ .+.+|.+.|++++|+|...+|.+|+.|.+|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999987666 88999999999999999999999999999976
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3e-34 Score=308.35 Aligned_cols=339 Identities=19% Similarity=0.320 Sum_probs=284.1
Q ss_pred CCcccCCCccccCCCeEEcccCCCceEEeecCCC------------------------------CCCCCccccccccCCC
Q 003236 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------ADPRDRVGRSAEVGKG 542 (837)
Q Consensus 493 ~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~------------------------------~~~~~~~~~~~~~~~g 542 (837)
+.+......+.+...++++|...++|++|..... .++++++++.+.+++|
T Consensus 58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG 137 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG 137 (603)
T ss_pred ccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence 3444555556666779999999999999966542 2467889999999999
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
....+ +.+|...|.+|+|-|... .+++|++|++|.+|+-...+...++..|...|.|++|+|||+++++++.||+|
T Consensus 138 ~SvGe---i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 138 NSVGE---ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred Cccce---eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 87655 569999999999999776 59999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEee---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-----------------
Q 003236 622 RVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----------------- 681 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----------------- 681 (837)
.|||-.+++. +..+. +|.+.|.+++|+||+..++ +++.|.+++|||+.+.+++.++..
T Consensus 215 ~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 215 YIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred EEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 9999998775 66665 8999999999999987655 899999999999998776653321
Q ss_pred ---------------------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE-----------Ec--
Q 003236 682 ---------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-----------LQ-- 721 (837)
Q Consensus 682 ---------------------------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~-----------l~-- 721 (837)
...|+++..++++.+|++++.||.|.-||..++..-.. +.
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~ 372 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS 372 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec
Confidence 23478999999999999999999999999876432100 00
Q ss_pred -------------------------CC-------------------------------------------CCCEEEEEEc
Q 003236 722 -------------------------GH-------------------------------------------KNQVHSVCWN 733 (837)
Q Consensus 722 -------------------------~h-------------------------------------------~~~V~sl~~s 733 (837)
.+ .....+++++
T Consensus 373 ~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~ 452 (603)
T KOG0318|consen 373 ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS 452 (603)
T ss_pred CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc
Confidence 00 0123568889
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCC
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDK 810 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~ 810 (837)
|++.++++|+ |+.|+||.+..... ........|...|++++|+||+.+|+++...+.|.+||+.+.+.. .+.-|..
T Consensus 453 ~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta 531 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA 531 (603)
T ss_pred CCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee
Confidence 9999999999 99999999987643 333455678999999999999999999999999999999998876 5557999
Q ss_pred CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 811 LVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 811 ~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|.+++|+|+..++|||+-|-.|.||+
T Consensus 532 kI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 532 KINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred eEEEEEeCCCceEEEeccccceEEEEE
Confidence 999999999999999999999999995
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-34 Score=288.20 Aligned_cols=283 Identities=20% Similarity=0.349 Sum_probs=244.6
Q ss_pred EEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCC-----CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 547 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
...++++|++.|+.++..+. ...|++++.|.++.+|++. .|...+.+.+|...|..+..++||.+.++++.|++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 45678999999999999986 5589999999999999764 47778999999999999999999999999999999
Q ss_pred EEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecC--CC
Q 003236 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPR--LG 695 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~--g~ 695 (837)
+++||+.+++ ..+.|.+|...|.+++|++|+. -+++|+.|.+|++|++.. .+..++.. ..-|.|++|+|+ ..
T Consensus 87 lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 87 LRLWDLATGE-STRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred EEEEEecCCc-EEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 9999999874 6899999999999999999966 566999999999999984 44444443 346999999998 67
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
+|+.++.|+.|++||+++.+....+.+|.+.++.++++|||.++++|+ ||.+.+||++.+ +++..+. +...|.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNSL 239 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEeeE
Confidence 899999999999999999999999999999999999999999999999 999999999988 5565554 67889999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE---E--eccC-----CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKTL---T--LSAH-----DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~--l~~h-----~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|+|+...|+.+. +..|+|||+.++.++ . +.+. .-...+++|++||..|++|-.|+.|++|.
T Consensus 240 ~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 240 CFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9999976555554 446999999998876 1 1122 23356789999999999999999999994
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=324.17 Aligned_cols=286 Identities=30% Similarity=0.531 Sum_probs=257.3
Q ss_pred EEEecC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 548 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 548 ~~~l~~-H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
...+.. |...|+|+.|+++|++|++++.|+.+++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 455544 48899999999999999999999999999998777 777888999999999999999999999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~d 703 (837)
|+......++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+..+ ..|++++|++++..|++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966666789999999999999999998 78889999999999999999999999864 579999999999999999999
Q ss_pred CeEEEEECCCCe--EEEEEcCCCCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc---eEEEE
Q 003236 704 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV 775 (837)
Q Consensus 704 g~I~iwDl~s~~--~~~~l~~h~~~--V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~---I~sv~ 775 (837)
+.|+|||+.++. ++..+.++... +++++|+|++.+|+++. |+.+++||+..+ .++..+.+|... +.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 66777777666 99999999999999999 889999999988 666666666654 44556
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 003236 776 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK 837 (837)
Q Consensus 776 fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h-~~~V~sla~spdg~~LaSgs--~DG~I~IWd 837 (837)
+++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+.|++...++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6889999999999999999999987766 77889 89999999999999999998 789999995
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.4e-33 Score=297.01 Aligned_cols=284 Identities=32% Similarity=0.539 Sum_probs=254.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
..+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45779999999999999999999999999999999999888888889999999999999999999999999999999997
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
.+ .+..+..|...|.++.|++++ .++++++.++.|++||+.+++....+. +...+.++.|+|++.++++++.++.|+
T Consensus 83 ~~-~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GE-CVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cc-ceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 54 366777888899999999984 477777779999999999888888777 455799999999988887777799999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+||+++++.+..+..|...|.+++|+|++..+++++ |+.|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 999999988888888999999999999998888888 999999999876 5666676778899999999998877777
Q ss_pred EcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 787 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 787 s~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|+|||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999987766 5668889999999999999999999999999997
No 11
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=283.86 Aligned_cols=268 Identities=19% Similarity=0.397 Sum_probs=244.0
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeeccccceEEE
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL 646 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~sl 646 (837)
-+||+++.|.+|++|...+|.+..++....+.|+.+...|+++.||+++.- .|++||+.+++. ++.++.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence 489999999999999999999999999888899999999999999998755 699999998765 889999999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-CCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN 725 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~-h~~ 725 (837)
.|..+|. .+++|++||+++|||++...+-+.+.+..+|+++..+|+...|+++..+|.|++||+....+...+.. ...
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999977 56699999999999999999999999999999999999999999999999999999998877666543 456
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-
Q 003236 726 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN- 800 (837)
Q Consensus 726 ~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~- 800 (837)
.|.++...|||.+|+.+. .|..++|++-... ...++..+..|...+..|.+|||+++|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 899999999999999998 8899999997643 24567788999999999999999999999999999999999887
Q ss_pred cE-EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 801 KT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 801 ~~-~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+. +.+.+|...++.++||.||.||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 26789999999999999999999999999999997
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=297.54 Aligned_cols=289 Identities=20% Similarity=0.382 Sum_probs=265.4
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 622 (837)
.+++..+++.+|.+.|.|+++.|-..+|++|+.|++|+|||+.++++..++.+|...|..+++++-..||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags 701 (837)
.||++.++. ++.+.+|-..|.|++.+|.-+ ++++|+.|.+++|||+++...+.++. +...|..+.+.|.+..+++|+
T Consensus 219 CwDLe~nkv-IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEYNKV-IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechhhhh-HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999998764 899999999999999999855 77799999999999999999999988 467799999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 702 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 702 ~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
.|++|++||++.++....+..|...|.+++.+|....+++++.+.|+-|++..+ ..+..+.+|...|.+++...|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-
Confidence 999999999999999999999999999999999999999999777999999888 6777789999999999998887
Q ss_pred EEEEEEcCCeEEEEECCCCcEEEe---------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 782 SLLVIGCYETLELWNMTENKTLTL---------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~~l---------~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++++|+.+|.|.+||.+++..... ...+..|.+.+|...|..|++|..|.+|++|+
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 588999999999999999875521 12356799999999999999999999999995
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-35 Score=301.70 Aligned_cols=289 Identities=26% Similarity=0.464 Sum_probs=269.9
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
..+...+.+|..+|+.+-|+|+-.++|++++|++|++||..++++...+++|.+.|.+|+|+..|++|++++.|=.+.+|
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~llags~d 703 (837)
|..+-..+++...+|...|.+++|-|.|+ .+++|+.|.+|+.|++.++-|+.++..+. -+..++.+.||..+++++.|
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 99986667888999999999999999986 55599999999999999999999998754 48889999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC---------------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd---------------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
.+|++|-+.++.+...+.+|+.+|.|++|-|. +.++++++ |++|++||+.++ .|+.++.+|
T Consensus 257 qtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~gh 333 (406)
T KOG0295|consen 257 QTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVGH 333 (406)
T ss_pred ceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEecc
Confidence 99999999999999999999999999999762 24888899 999999999999 899999999
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 768 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+.|..++|+|.|+||+++..|++|++||++++.++ .+..|...|++++|+.+..+++||+-|-++++|.
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 999999999999999999999999999999999988 7789999999999999999999999999999995
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.6e-33 Score=300.04 Aligned_cols=293 Identities=20% Similarity=0.338 Sum_probs=248.5
Q ss_pred CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec---cCCCCeEEEEEcCCCCEEEEEeC
Q 003236 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 541 ~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~ 617 (837)
.|.+|+.-.+++.|..-|.|+.|+|||+++|+++.||+|.|||-.+++.+..+. +|.+.|.++.|+||++.|+|++.
T Consensus 176 eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa 255 (603)
T KOG0318|consen 176 EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA 255 (603)
T ss_pred eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC
Confidence 567778888999999999999999999999999999999999999999999998 89999999999999999999999
Q ss_pred CCeEEEEEcCCCCc------------------------------------------eeEEeeccccceEEEEEcCCCCeE
Q 003236 618 DRTVRVWDTENPDY------------------------------------------SLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 618 Dg~I~IWDl~~~~~------------------------------------------~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
|.+++|||+.+.+. +...+.+|...|+++..++++. .
T Consensus 256 Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~ 334 (603)
T KOG0318|consen 256 DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-T 334 (603)
T ss_pred CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-E
Confidence 99999999985431 2345668999999999999985 5
Q ss_pred EEEEeCCCcEEEEECCCCeeee-------------------------------EEec-----------------------
Q 003236 656 LCSCDNNSEIRYWSINNGSCAG-------------------------------VFKC----------------------- 681 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t~~~i~-------------------------------~~~~----------------------- 681 (837)
|++|+.||.|.-||+.++..-+ .+..
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 6699999999999987653211 0000
Q ss_pred ----------------------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEE
Q 003236 682 ----------------------------QSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVC 731 (837)
Q Consensus 682 ----------------------------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~--~~~~l~~h~~~V~sl~ 731 (837)
.-...+++++|++..+++|+.|+.|+||.+.... ....+..|..+|++++
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE
Confidence 0113578889999999999999999999998754 3345567999999999
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--EEeccC
Q 003236 732 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--LTLSAH 808 (837)
Q Consensus 732 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~--~~l~~h 808 (837)
|+||+.||++|. .+.|.+||+.+... .......|...|.+++|+|+..++++|+-|..|.||+++.... ....+|
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEecccc
Confidence 999999999999 99999999998743 3334455889999999999999999999999999999976543 255689
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 809 DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 809 ~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
...|+.+.|- |...|++.+.|..|++|.
T Consensus 573 ~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 573 LGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred ccCceeEEEe-cCceEEeccCcceeEEec
Confidence 9899999996 456788999999999995
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.8e-33 Score=274.46 Aligned_cols=289 Identities=21% Similarity=0.313 Sum_probs=251.4
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
..-++++++.|-+|+.|....+ .+.+++.-..+.|..+.+.||+++||+++. -.|++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG-------------------~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTG-------------------ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcC-------------------eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence 4568899999999999955433 467778778888999999999999999885 57999999
Q ss_pred CCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 585 ESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 585 ~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
.+.+ ++.++.+|+..|+++.|..+|+.++||++||+++|||++... ......|..+|+++..+|+-..+| +|+.+
T Consensus 69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLi-s~dqs 145 (311)
T KOG0315|consen 69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELI-SGDQS 145 (311)
T ss_pred cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEE-eecCC
Confidence 8765 589999999999999999999999999999999999999843 444555889999999999976555 99999
Q ss_pred CcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------eEEEEEcCCCCCEEEEEEcC
Q 003236 663 SEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNT 734 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~------~~~~~l~~h~~~V~sl~~sp 734 (837)
|.|++||+.+..+...+.. ...+.++.+.|+|..++++...|..++|++-.. +++..++.|...+..+.+||
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP 225 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP 225 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence 9999999998877666543 456899999999999999999999999998653 56677889999999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCe
Q 003236 735 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV 812 (837)
Q Consensus 735 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V 812 (837)
|+++|++++ |.+++||+.++. .+.-..+.+|...+..|+||.|+.||++++.|+.+++||+..++.+ ...+|....
T Consensus 226 d~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~ 303 (311)
T KOG0315|consen 226 DVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA 303 (311)
T ss_pred CCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence 999999999 999999999876 3555677888999999999999999999999999999999999987 667888888
Q ss_pred eEEEEe
Q 003236 813 SSLAAS 818 (837)
Q Consensus 813 ~sla~s 818 (837)
.|++..
T Consensus 304 vc~~ln 309 (311)
T KOG0315|consen 304 VCVALN 309 (311)
T ss_pred EEEEee
Confidence 887764
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.2e-35 Score=306.83 Aligned_cols=277 Identities=21% Similarity=0.433 Sum_probs=249.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
..+|..|.|.|+|+.|++|+..|.+.+|+..+......+..|...|.++.|++++.++++|+.+|.|++|+..-.. ++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 3469999999999999999999999999997777777788999999999999999999999999999999987543 44
Q ss_pred Eeecc-ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 635 TFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 635 ~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
.+..| ...|.+++|+|++. .|++|++||+|+|||....+....+..+ -.|.++.|+|..+.|++++.|+.|++||.+
T Consensus 174 ~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 45544 49999999999754 6779999999999999998888877754 469999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 003236 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE 790 (837)
Q Consensus 713 s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg 790 (837)
++.|+.++.+|+..|..+.|++++++|++++ |..+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.||
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 9999999999999999999999999999999 999999999966 6788889999999999999965 4567788899
Q ss_pred eEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 791 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 791 ~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|..|.+...+.+ .-.+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 9999999865555 4458999999999999999999999999999994
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-33 Score=297.39 Aligned_cols=316 Identities=19% Similarity=0.296 Sum_probs=269.4
Q ss_pred CeEEcccCCCceEEeecCCCC-CCCC--ccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 507 RFVDDGSLDDNVESFLSPDDA-DPRD--RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~-~~~~--~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
.++++|+.|...++|...... .... .+.++... .+ .. -..+..|++++|+.+|.+||+|+.||.++||+
T Consensus 192 ~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~-~~------~s-~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~ 263 (524)
T KOG0273|consen 192 GLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIRE-GG------KS-VPSNKDVTSLDWNNDGTLLATGSEDGEARIWN 263 (524)
T ss_pred hhhhccCCccceeeeeehhhccccchhhhhhhhhhh-hc------cc-CCccCCcceEEecCCCCeEEEeecCcEEEEEe
Confidence 477889999889998554311 0000 01111100 00 00 11245699999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
.++..+.++..|+++|.++.|+.+|.||++++.|+++.+||..++.. ...+.-|..+-..+.|-.+. -|++++.|+
T Consensus 264 -~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~~--~F~ts~td~ 339 (524)
T KOG0273|consen 264 -KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSND--EFATSSTDG 339 (524)
T ss_pred -cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecCc--eEeecCCCc
Confidence 45788889999999999999999999999999999999999988664 66777788877888887654 477899999
Q ss_pred cEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC------
Q 003236 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG------ 736 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg------ 736 (837)
.|+|+.+....++.++.+ ++.|.++.|.|.+..|++++.|++++||......+...+..|...|..+.|+|+|
T Consensus 340 ~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~ 419 (524)
T KOG0273|consen 340 CIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNP 419 (524)
T ss_pred eEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCC
Confidence 999999998888887764 6789999999999999999999999999999999999999999999999999965
Q ss_pred ---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCe
Q 003236 737 ---EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLV 812 (837)
Q Consensus 737 ---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V 812 (837)
..|++++ |++|++||+..+ .+++.+..|..+|++++|+|+|+++++|+.||.|.+|++++++++......+.|
T Consensus 420 ~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~I 496 (524)
T KOG0273|consen 420 NMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGI 496 (524)
T ss_pred cCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeE
Confidence 3667777 999999999988 899999999999999999999999999999999999999999999888888889
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 813 SSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 813 ~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..++|+.+|.+|..+-.||.+++-|
T Consensus 497 fel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 497 FELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EEEEEcCCCCEEEEEecCCCceEEE
Confidence 9999999999999999999998754
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-32 Score=276.71 Aligned_cols=275 Identities=16% Similarity=0.285 Sum_probs=235.0
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
....+.+++.|..+-+|....+ +..-| ..++.++||...|..+..++||.+.++++.|+++++||+
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~d-----------d~~~G---~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSD-----------DIKYG---VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCceEEEcccceEEEEEEeccC-----------ccccC---ceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 3467888999999999965544 11122 346788999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee-ccccceEEEEEcCCC-CeEEEEEeCC
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSK-EDLLCSCDNN 662 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~-~h~~~V~sl~fspdg-~~llasgs~D 662 (837)
.+++....|.+|...|.+++|++|.+.|++|+.|.+|++|++...- ...... .+.+.|.|+.|+|+. +.++++++.|
T Consensus 93 ~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~D 171 (315)
T KOG0279|consen 93 ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWD 171 (315)
T ss_pred cCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCC
Confidence 9999999999999999999999999999999999999999998643 233322 237899999999985 5688899999
Q ss_pred CcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
++|++||+++.+....+.. .+.++.++++|||...++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.
T Consensus 172 ktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~ 250 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCA 250 (315)
T ss_pred ceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEee
Confidence 9999999999888877765 4558999999999999999999999999999999988776 8899999999999999988
Q ss_pred EeCCeEEEEEcCCCCCceeEEEeec---------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 742 VSDELVRVWSIGSGSKGECIHELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 742 gsDg~I~IwDl~s~~~~~~i~~~~~---------~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
+.+..|+|||+.+.. ++.++.. ......+++|+++|..|++|-.|+.|++|.+.
T Consensus 251 at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 251 ATATSIKIWDLESKA---VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccCCceEEEeccchh---hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 888889999999873 3333221 13345788999999999999999999999864
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.9e-32 Score=270.58 Aligned_cols=283 Identities=24% Similarity=0.436 Sum_probs=241.7
Q ss_pred eeEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCC---CeEEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 545 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t---~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
+..++.+.+|.++|..++|+|- |..||+++.|+.|+||+... ..+...+ .+|+..|.+++|+|.|++|+++|.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 3467889999999999999997 88999999999999999884 4555555 47999999999999999999999999
Q ss_pred eEEEEEcCCCC-ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---eeeeEEec-CCCeeEEEEecCC
Q 003236 620 TVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKC-QSGATQMRFQPRL 694 (837)
Q Consensus 620 ~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---~~i~~~~~-~~~i~sl~~sp~g 694 (837)
++.||.-..++ .++.++.+|.+.|.|++|+++|. +|++|+.|+.|.||.+..+ +++..+.. ...|..+.|+|..
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999877554 36788999999999999999976 7889999999999999754 45555553 4568999999999
Q ss_pred CEEEEEEcCCeEEEEECC---CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 695 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 695 ~~llags~dg~I~iwDl~---s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
..|++++.|++|++|+-. ...++.++.+|...|.+++|++.|..|++++ |++|+||...+. .-..|...
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~ 235 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA 235 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence 999999999999999876 3488999999999999999999999999999 999999986543 12235678
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCc------EE--EeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENK------TL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK 837 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~------~~--~l~~h~~~V~sla~spd-g~~LaSgs~DG~I~IWd 837 (837)
++.+.|. ...|++++.|+.|++|...... .+ ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus 236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 8999998 4469999999999999765431 11 34579999999999995 67999999999999994
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.5e-33 Score=294.47 Aligned_cols=282 Identities=25% Similarity=0.441 Sum_probs=249.3
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCC--CeEE--EEec----------cCCCCeEEEEEcCCCCEE
Q 003236 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--FTVK--STLE----------EHTQWITDVRFSPSLSRL 612 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t--~~~~--~~l~----------~h~~~I~~l~fspdg~~L 612 (837)
++.++ |..+|.+++|+|-.. +|++|+.|-+.++|++.. .... ..++ ..+..|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 45555 999999999999655 999999999999999874 1111 1111 123579999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCe-eEEEEe
Q 003236 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMRFQ 691 (837)
Q Consensus 613 atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i-~sl~~s 691 (837)
|+|+.||.++||+.... .+.++..|.++|.++.|+.+|.++ ++++.|+++.+||..++.....+..+... ..+.|-
T Consensus 251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~yi-lS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGTYI-LSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCCEE-EeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 99999999999999853 378899999999999999998755 49999999999999999999988876665 678887
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 692 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 692 p~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
.+ ..+++++.|+.|+|+.+....++.++.+|.+.|.++.|+|.+.+|++++ |++++||..... .+++.+..|...
T Consensus 328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske 403 (524)
T KOG0273|consen 328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE 403 (524)
T ss_pred cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence 65 6788999999999999999999999999999999999999999999999 999999998776 788899999999
Q ss_pred eEEEEEeCCCC---------EEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 771 FHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 771 I~sv~fspdg~---------~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|..+.|+|+|. .|++++.|++|++||+..+.++ .+..|..+|.+++|+|+|+++|+|+.||.|.||+
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 99999999863 5899999999999999999988 7779999999999999999999999999999995
No 21
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=294.94 Aligned_cols=291 Identities=20% Similarity=0.320 Sum_probs=245.1
Q ss_pred CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003236 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 541 ~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t---~~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 617 (837)
...+..+...+..|++.|+-+.||++|+|||+++.|.+..||.+.. .+..+++.+|..+|..+.|+||.++|++|+.
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc
Confidence 3456677889999999999999999999999999999999997653 4557889999999999999999999999999
Q ss_pred CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCC
Q 003236 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLG 695 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~ 695 (837)
|..+.+||+.++......-.+|...+.+++|.||+.. +++|+.|+.|..||+... ....... ...|.++++++||+
T Consensus 290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred hHheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCc
Confidence 9999999999988644444456789999999999886 458999999999999843 3333332 24689999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc--eE
Q 003236 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FH 772 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~--I~ 772 (837)
++++.+.|..|++|+.++...+..+. ...+|++++++.|++++++.- +..|.+||+... ..+..+.+|... +.
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEE
Confidence 99999999999999998876665444 457899999999999988776 889999999855 556666666432 33
Q ss_pred EEEEe-CCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003236 773 SCVFH-PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fs-pdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWd 837 (837)
.-+|- .+..+|++|+.|+.|+||+..+++++ .+.+|...|++++|+|.. .++|+|++||+|+||.
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 33444 45588999999999999999999988 889999999999999965 5899999999999994
No 22
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=8.9e-34 Score=302.84 Aligned_cols=290 Identities=20% Similarity=0.337 Sum_probs=253.7
Q ss_pred eEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
..+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..+++++.|++|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 35678899999999999999 899999999999999999876 8999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEc
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~ 702 (837)
||++++.+ +..+. ....++|+.|+|++.++|++|+.|+.|+.||+++++.+..+.. -+.|..+.|.+++.++++++.
T Consensus 285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999875 33333 3467899999999988999999999999999999998888865 467999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC--CceEEEEEeC
Q 003236 703 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP 778 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~--~~I~sv~fsp 778 (837)
|+.++||+.+....+..+.. +.....||..+|++.++++-+ |+.|.||.+...........+.+|. +.-..|.|||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 99999999998866554432 334567899999999999988 9999999987654434444555553 4567789999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003236 779 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWd 837 (837)
||.+|++|+.||.+.+||.++.+++ .+.+|+.++..+.|+|.. ..+|||+.||.|+|||
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999999988 788999999999999965 5899999999999997
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-31 Score=294.63 Aligned_cols=320 Identities=20% Similarity=0.321 Sum_probs=259.2
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
.+...+++.|+. ..+.+|..+..... .-.+|...+++.+|...|+++.|+.|.++|++|+.|-+++||
T Consensus 105 SPng~~fav~~g-n~lqiw~~P~~~~~-----------~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~ 172 (893)
T KOG0291|consen 105 SPNGKFFAVGCG-NLLQIWHAPGEIKN-----------EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLF 172 (893)
T ss_pred CCCCcEEEEEec-ceeEEEecCcchhc-----------ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEE
Confidence 333467776654 57888866554221 235677788999999999999999999999999999999999
Q ss_pred eCCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----------------------CCc-----e
Q 003236 583 CTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----------------------PDY-----S 632 (837)
Q Consensus 583 d~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~-----------------------~~~-----~ 632 (837)
+++..+. ...+.+|.+.|..+-|..+...++|.+.||.+.+|.... ++. .
T Consensus 173 ~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~ 252 (893)
T KOG0291|consen 173 GVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIF 252 (893)
T ss_pred EeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceE
Confidence 9987665 577889999999999999999999999999999998761 000 0
Q ss_pred e-----EEeeccccc------------------------------------------eEEEEEcCCCCeEEEEEeCCCcE
Q 003236 633 L-----RTFTGHSTT------------------------------------------VMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 633 ~-----~~~~~h~~~------------------------------------------V~sl~fspdg~~llasgs~Dg~I 665 (837)
. ..+...... |..++|+..|+.+.+.|+.-|.+
T Consensus 253 ~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQL 332 (893)
T KOG0291|consen 253 WYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQL 332 (893)
T ss_pred EEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceE
Confidence 0 001111123 34444454555555555555677
Q ss_pred EEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
.||+..+...+.... +...+++++++|||.++++|+.||.|+|||..++-|..+|..|++.|+.+.|+..++.+++.+
T Consensus 333 lVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL 412 (893)
T KOG0291|consen 333 LVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL 412 (893)
T ss_pred EEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeec
Confidence 777776655554444 345799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EeccCCCCeeEEEEeCC
Q 003236 744 DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSLAASTV 820 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~s~~~~-~l~~h~~~V~sla~spd 820 (837)
||+|+.||+... .+.+++... .....+++..|.|..+++|+.|. .|++|++.+|+++ .+.+|+++|.+++|+|+
T Consensus 413 DGtVRAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 413 DGTVRAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred CCeEEeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 999999999876 667776654 34578899999999988888888 8999999999999 78899999999999999
Q ss_pred CCEEEEEECCCcEEEeC
Q 003236 821 NGMVASASHDKCVKIWK 837 (837)
Q Consensus 821 g~~LaSgs~DG~I~IWd 837 (837)
+..||+++.|.+|++||
T Consensus 490 ~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWD 506 (893)
T ss_pred cCeEEeccccceEEEEE
Confidence 99999999999999997
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-31 Score=296.32 Aligned_cols=289 Identities=22% Similarity=0.347 Sum_probs=253.8
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~D-g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~ 622 (837)
.+..+..+.-...+|..++|+..|.+||.|+.. |.+.||+..+...+....+|...|++++++|||.++|||+.||.|+
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 345677777788899999999999999998765 7999999999888999999999999999999999999999999999
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAA 700 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llag 700 (837)
|||...+- |+.++..|+..|+.+.|+..+. .+++.+-||+|+.||+...++.+++..+.+ ..|++..|.|..+++|
T Consensus 376 vWn~~Sgf-C~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 376 VWNTQSGF-CFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred EEeccCce-EEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee
Confidence 99999754 6999999999999999999976 555888999999999999999999998766 5688888889988888
Q ss_pred EcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 701 AIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 701 s~dg-~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
+.|. .|.+|++.+|+.+..+.+|+++|.+++|+|++..|++++ |.+|++||+-... ..+.++ .....+..++|+|
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl-~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETL-EIRSDVLAVSFRP 530 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeE-eeccceeEEEEcC
Confidence 8885 799999999999999999999999999999999999999 9999999997652 122233 3467899999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-----------------Ee----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 779 TFPSLLVIGCYETLELWNMTENKTL-----------------TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~~~-----------------~l----~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|+.|++++-||.|.+||...+..+ .+ .......+.+++++||++|++|+....|+||+
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD 610 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence 9999999999999999998765433 01 12235789999999999999999999999985
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=278.00 Aligned_cols=310 Identities=16% Similarity=0.203 Sum_probs=270.5
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+..+++++|+-|+...+|....+. ....+.+|.+.|+|+.||.||.+||||+.+|.|+|
T Consensus 72 l~P~~~l~aTGGgDD~AflW~~~~ge-------------------~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 72 LHPNNNLVATGGGDDLAFLWDISTGE-------------------FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred eCCCCceEEecCCCceEEEEEccCCc-------------------ceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 45577899999999999999665542 35667899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
|...++.....+...-+.|.-++|+|.+..|+.|+.||.|.+|.+.+.. ..+.+.+|..++++=.|.|+|++++ ++..
T Consensus 133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~ 210 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRIL-TGYD 210 (399)
T ss_pred EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEE-EEec
Confidence 9999999998887677789999999999999999999999999999864 4789999999999999999988555 8889
Q ss_pred CCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--------CCCCCEEEEE
Q 003236 662 NSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--------GHKNQVHSVC 731 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~--------~h~~~V~sl~ 731 (837)
||+|++||+.++.++..+.. .....++.++..+..++.|..++.+++....+++.+.... .++..+.||.
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 99999999999999888874 4467889999999999999999999999999998887776 3444445554
Q ss_pred ---EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eec
Q 003236 732 ---WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS 806 (837)
Q Consensus 732 ---~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~ 806 (837)
|+..-.+.|+|+ ||+|.|||+... .++..-.|...|+.+.|.+ ..+|++++.+|.|+.||.++|.++ .+.
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYT 365 (399)
T ss_pred hcccccccchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEe
Confidence 455567788888 999999999875 3344455788899999999 789999999999999999999988 788
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 807 AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 807 ~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|...|.+++++|+.++++|+|.|++.+||+
T Consensus 366 GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 366 GHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred cCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 9999999999999999999999999999985
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.4e-31 Score=322.77 Aligned_cols=284 Identities=18% Similarity=0.283 Sum_probs=242.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----e----EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeE
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTV 621 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~----~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 621 (837)
+..|.+.|++++|+|+|++||+|+.|++|+||++... . ....+. +...|.+++|++ ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997531 1 122333 346799999987 47899999999999
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEe-cCCCEEEEE
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ-PRLGRILAA 700 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~s-p~g~~llag 700 (837)
+|||+.++. .+..+.+|...|++++|+|.+..+|++|+.|+.|++||++++.++..+.....+.++.|. +++..+++|
T Consensus 558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence 999999765 477888999999999999855568889999999999999999999888877889999995 468899999
Q ss_pred EcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CceeEEEeecCCCceEEEE
Q 003236 701 AIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 701 s~dg~I~iwDl~s~~-~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~~~~~~~~I~sv~ 775 (837)
+.|+.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|+|||++... ...++..+.+|...+..++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998765 567788999999999997 677888888 9999999997532 2256778889999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEE--------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 776 FHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 776 fspdg~~L~sgs~dg~I~IwDl~s~~~~--------------~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++.+|++|+.|+.|++|+......+ ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999999999999999999998655322 1123556799999999999999999999999996
No 27
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.8e-31 Score=266.40 Aligned_cols=277 Identities=24% Similarity=0.379 Sum_probs=244.9
Q ss_pred CceEEEEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEE
Q 003236 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (837)
Q Consensus 481 ~~s~~~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~s 560 (837)
....+.|+.+. +.++++|.|+.+-+|++... ..+..++--...|..
T Consensus 57 Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs~Tt-------------------nK~haipl~s~WVMt 102 (343)
T KOG0286|consen 57 KIYAMDWSTDS---------------RRIVSASQDGKLIVWDSFTT-------------------NKVHAIPLPSSWVMT 102 (343)
T ss_pred ceeeeEecCCc---------------CeEEeeccCCeEEEEEcccc-------------------cceeEEecCceeEEE
Confidence 45666777655 78899999999999966433 235556667788999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCC------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
++|+|.|+++|+|+-|+...||++.+. +..+.+.+|++.+.|+.|.+| ..|+|+|.|.++.+||++++.. +.
T Consensus 103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-~~ 180 (343)
T KOG0286|consen 103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-TQ 180 (343)
T ss_pred EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-EE
Confidence 999999999999999999999999854 455778999999999999974 6799999999999999999774 88
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
.|.+|.+.|.++++.|...+.|++|+.|+..++||++.+.++..|.. ...|++++|.|+|..|++|+.|++.++||++.
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 99999999999999995556778999999999999999999999985 56799999999999999999999999999999
Q ss_pred CeEEEEEcC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 714 QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 714 ~~~~~~l~~--h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
...+..+.. ...+|++++|+..|++|++|. |..+.|||.-.+ +.+..+.+|++.|+++..+|||..+++|+.|.
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 888777763 345899999999999999988 899999999877 78888999999999999999999999999999
Q ss_pred eEEEEE
Q 003236 791 TLELWN 796 (837)
Q Consensus 791 ~I~IwD 796 (837)
.|+||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 28
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.8e-32 Score=303.78 Aligned_cols=276 Identities=23% Similarity=0.381 Sum_probs=240.6
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-------------------------------eEEEEecc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLEE 595 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-------------------------------~~~~~l~~ 595 (837)
++.++......|+|+.|++|+.+||.|..|..|++|.+... ....++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 44555555566999999999999999999999999986521 12244679
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 675 (837)
|.++|..+.|+|+.++|++||+|++||+|.+.+.. ++..+.+|..+|+++.|+|.| ++|++++.|++-++|......+
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence 99999999999999999999999999999999865 477888999999999999995 6888999999999999999888
Q ss_pred eeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003236 676 AGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 753 (837)
Q Consensus 676 i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~ 753 (837)
.+.+.+ -+.+.|+.|+|+..++++|+.|.+|++||+.++..++.|.+|.++|++++|+|+|++|++|+ |+.|+|||+.
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 888875 56799999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE------------------------E-EeccC
Q 003236 754 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT------------------------L-TLSAH 808 (837)
Q Consensus 754 s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~------------------------~-~l~~h 808 (837)
++ ..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-.. + .+..-
T Consensus 608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK 684 (707)
T KOG0263|consen 608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK 684 (707)
T ss_pred CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec
Confidence 98 67888889999999999999999999999999999999853211 1 33344
Q ss_pred CCCeeEEEEeCCCCEEEEE
Q 003236 809 DKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 809 ~~~V~sla~spdg~~LaSg 827 (837)
..+|.++.|...+-.|++|
T Consensus 685 ~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 685 NTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CceEEEEEEeccceeEEec
Confidence 5578888888766555554
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-31 Score=294.85 Aligned_cols=288 Identities=21% Similarity=0.323 Sum_probs=259.3
Q ss_pred eEEEEecCCCCCeEEEEEc-CCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 546 TEFQLIPASTSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fS-pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
.....+-|..+.|.+++|- |+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|-+|+||+.|+++++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 3445566888899999875 57789999999999999998887776 888999999999966678899999999999999
Q ss_pred EcCCCC---ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---eEE-------ecCCCeeEEEEe
Q 003236 625 DTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVF-------KCQSGATQMRFQ 691 (837)
Q Consensus 625 Dl~~~~---~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i---~~~-------~~~~~i~sl~~s 691 (837)
.++++. .++....+|++.|.+++++..+..+|++++.|++|++|++...+.. ..+ .+...|+|++++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 885432 2456678999999999999999999999999999999999762211 111 246679999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 692 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 692 p~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
|+.+.|++|+.|.+.+||+++......++.+|...|.|+.|++....+++++ |++|+||.+.+. .|+.++.+|...
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~a 549 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSA 549 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccce
Confidence 9999999999999999999999999999999999999999999999999999 999999999988 899999999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|..+.|-.++..|++++.||-|++|+++++.++ ++..|.+.|++++.++...+++||+.||.|.+|+
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999999999998 8899999999999999999999999999999995
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-31 Score=299.38 Aligned_cols=252 Identities=23% Similarity=0.430 Sum_probs=220.8
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCC----------C-----CCCccccccccCCCeeeeEEEEecCCCCCeEEEEE
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDA----------D-----PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF 563 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~----------~-----~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~f 563 (837)
...+.+....+|.|-.|..|++|...... . ..+......+..++ ...+.+.+|.++|..+.|
T Consensus 383 ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~---~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 383 CAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS---GTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred eEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC---ceeEEeecCCCceeeeee
Confidence 34456666789999999999999665311 0 01112222222222 334558899999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccce
Q 003236 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V 643 (837)
+|+.++|++++.|++|++|.+.+..++..+.+|..+|+++.|+|.|-|+||+|.|++.++|..+.. .+.+.+.+|-+.|
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghlsDV 538 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLSDV 538 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999974 4699999999999
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 003236 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 644 ~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~ 722 (837)
.|+.|+|+.. ++++|+.|.+|++||+.+|..++.|.. .+.|.+++|+|+|.+|++|+.|+.|.+||+.++..+..+.+
T Consensus 539 ~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~ 617 (707)
T KOG0263|consen 539 DCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG 617 (707)
T ss_pred ceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence 9999999965 777999999999999999999999986 56799999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 723 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 723 h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
|++.|.++.|+.||..|++++ |..|++||+...
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999 999999998753
No 31
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.7e-30 Score=289.22 Aligned_cols=316 Identities=19% Similarity=0.275 Sum_probs=263.5
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC--EEEEEECC
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHD 576 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~--~Lasgs~D 576 (837)
...+++...++++|+.|+.+++|+.... .....|+||.+.|.++.|+|+-. +|++|..|
T Consensus 110 ~ma~~~~g~LlAtggaD~~v~VWdi~~~-------------------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 110 TMAFDPTGTLLATGGADGRVKVWDIKNG-------------------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred EEEEcCCCceEEeccccceEEEEEeeCC-------------------EEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 4455666789999999999999966443 35678999999999999999755 58999999
Q ss_pred CcEEEEeCCCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-------------------------
Q 003236 577 KKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------------------------- 630 (837)
Q Consensus 577 g~I~VWd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~------------------------- 630 (837)
++|++||+.+... +.++..|.+.|++++|++|+..+++++.|..|.|||+.+-+
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 9999999985544 77788999999999999999999999999999999875100
Q ss_pred --------------------------------------------------------------------------------
Q 003236 631 -------------------------------------------------------------------------------- 630 (837)
Q Consensus 631 -------------------------------------------------------------------------------- 630 (837)
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence
Q ss_pred ---------------c----------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee----eEEe-
Q 003236 631 ---------------Y----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFK- 680 (837)
Q Consensus 631 ---------------~----------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i----~~~~- 680 (837)
. ....+.+|+..|.+++...+| .++++|+.|.++++|.++++... ....
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 0 012345688888888854454 58899999999999988544322 2222
Q ss_pred cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE-----EE----EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEE
Q 003236 681 CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-----RL----KLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 749 (837)
Q Consensus 681 ~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~-----~~----~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~I 749 (837)
+...|.+++++..+ .+|++++.|.+|++|++...+. +. ....|...|+|++++|+.++|++|+ |.+.+|
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 35668888887654 4678889999999999986221 11 2346999999999999999999999 999999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 750 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 750 wDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
|++... ....++.+|...+.++.|++....+++++.|.+|+||.+.+..++ ++.+|...|..+.|-.+++.|++|+
T Consensus 490 W~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 490 WDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred ecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc
Confidence 999865 888999999999999999999999999999999999999999999 8889999999999999999999999
Q ss_pred CCCcEEEeC
Q 003236 829 HDKCVKIWK 837 (837)
Q Consensus 829 ~DG~I~IWd 837 (837)
.||.|+||+
T Consensus 567 adGliKlWn 575 (775)
T KOG0319|consen 567 ADGLIKLWN 575 (775)
T ss_pred CCCcEEEEe
Confidence 999999996
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=8e-32 Score=282.27 Aligned_cols=269 Identities=23% Similarity=0.414 Sum_probs=231.4
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
..+.+.+|+..+.+.+|. +..|.....+.+|..+|+++.|+++|.++++|+.+|.|++|+.
T Consensus 107 eGRRLltgs~SGEFtLWN-------------------g~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 107 EGRRLLTGSQSGEFTLWN-------------------GTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred CCceeEeecccccEEEec-------------------CceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 336788999999999992 3344445567899999999999999999999999999999996
Q ss_pred CCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 585 ESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 585 ~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
.- ..+..+. .|...|.+++|+|+...|++||.||+|+|||....+. -+.+.+|.-.|.|++|+|... ++++++.|.
T Consensus 168 nm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kg-LiasgskDn 244 (464)
T KOG0284|consen 168 NM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKG-LIASGSKDN 244 (464)
T ss_pred ch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccc-eeEEccCCc
Confidence 54 3444444 4559999999999999999999999999999987664 567799999999999999955 888999999
Q ss_pred cEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEE
Q 003236 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLAS 741 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg-~~Las 741 (837)
.|++||.+++.|+.++.. ...|..+.|++++++|++++.|..+++||+++.+.+..+++|+..|+++.|+|-. .+|++
T Consensus 245 lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lfts 324 (464)
T KOG0284|consen 245 LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTS 324 (464)
T ss_pred eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceee
Confidence 999999999999988865 5679999999999999999999999999999999999999999999999999954 46666
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 742 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 742 gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
|+ ||.|..|.+...+ .....-..|...|++++|+|-|..|++|+.|.++++|.-
T Consensus 325 gg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 325 GGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 66 9999999998442 222334568899999999999999999999999999974
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=269.43 Aligned_cols=278 Identities=24% Similarity=0.437 Sum_probs=249.3
Q ss_pred ccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003236 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (837)
Q Consensus 496 ~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~ 575 (837)
++..+.+.+...++++.+.|.++++|+.... ...+.+++|++.|.+|+|+..|++||+++.
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-------------------~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDATIKVFDTETG-------------------ELERSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred ceeeeeeccCceEEEEecCCceEEEEEccch-------------------hhhhhhhccccceeEEEEecCccEEEecCC
Confidence 3444445566678899999999999966443 225678999999999999999999999999
Q ss_pred CCcEEEEeCCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 576 DKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 576 Dg~I~VWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
|-.+.+||..+ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++. ++.++.+|...|..+..+.||.
T Consensus 171 Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGt- 248 (406)
T KOG0295|consen 171 DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGT- 248 (406)
T ss_pred ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCee-
Confidence 99999999987 67788888999999999999999999999999999999999865 6999999999999999999865
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecC---------------CCEEEEEEcCCeEEEEECCCCeEEE
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR---------------LGRILAAAIENYISILDVETQVCRL 718 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~---------------g~~llags~dg~I~iwDl~s~~~~~ 718 (837)
++++|+.|.+|++|-+.++.|...++. ...|.|++|.|. +.++++++.|++|++||+.++.++.
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~ 328 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF 328 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence 889999999999999999988777764 456888888773 1378889999999999999999999
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 719 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 719 ~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
++.+|.++|..++|+|.|+||+++. |++++|||+.+. .|.+.+..|..-++++.|+.+..++++|+-|-++++|..
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999 889999999988 899999999999999999999999999999999999974
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.4e-30 Score=251.04 Aligned_cols=280 Identities=18% Similarity=0.347 Sum_probs=242.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
+...+..|.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|+.|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--eeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~--~~i~~~~~-~~~i~sl~~sp~g~~llags~d 703 (837)
++++. ++.+.+|.+.|+.+.|+.+. .++++|+.|.++++||.++. +++..+.. ...|.++.+.. ..|++|+.|
T Consensus 89 ~TGkv-~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~D 164 (307)
T KOG0316|consen 89 NTGKV-DRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSVD 164 (307)
T ss_pred ccCee-eeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeeccC
Confidence 99875 89999999999999999874 58889999999999999864 45555543 46688887764 579999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc--eEEEEEeCCC
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FHSCVFHPTF 780 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~--I~sv~fspdg 780 (837)
|+++.||++.+.....+-+ .+|+|++|++|++.+++++ |++|++.|-.++ +.+..+++|.+. -..+++....
T Consensus 165 GtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred CcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeecccc
Confidence 9999999999987766654 4899999999999998888 999999999998 667777777654 3566788888
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EeccCCCC-eeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 781 PSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~-V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.++++|+.||.|++||+.+...+ .+..|... |.+++++|.-..|+++.. +.+.+|
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 89999999999999999998888 56666666 899999998877777754 345555
No 35
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5e-30 Score=285.26 Aligned_cols=281 Identities=20% Similarity=0.390 Sum_probs=255.3
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
..+.+|...|.++++|.|...+++|+ .+.|+||+.++.++++++.. +.+.+..|.|.++++++|...|.+.|||+..
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 34679999999999999988888776 47899999999999999964 4899999999999999999999999999998
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-----Cee--------eeEEecCCCeeEEEEecCCC
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC--------AGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-----~~~--------i~~~~~~~~i~sl~~sp~g~ 695 (837)
... +.++..|.+.|++++.+||+..++ +++.|.+|++||..- +.. .+++.....|.|+.++||++
T Consensus 444 ~~l-~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 444 ASL-VETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhh-hhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 664 677779999999999999987555 999999999999742 111 13455578899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
+++++--|++|+||-+++-+....+.||.-+|.|+.++||++++++|+ |..|+||-+.-| .|-..+-.|...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence 999999999999999999999999999999999999999999999999 999999999887 8888999999999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|-|....+++++.|+.|+-||-..-+.+ .+.+|...|+|++.+|+|.+++++++|.+|++|.
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 99999999999999999999998887776 8899999999999999999999999999999995
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=263.37 Aligned_cols=285 Identities=19% Similarity=0.245 Sum_probs=247.6
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
.+..|..|++.|.+|+.+|+.+++|||+.|....||++.++.....+.+|++.|+++.|+.+|.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCe
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~ 705 (837)
.++.. ...+......|.-+.|+|.+. +|++|+.||.|.+|.+.+......+.. ..++++-.|.|+|++++++..||+
T Consensus 136 stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98775 455555677899999999755 777999999999999998666666654 567999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee--------cCC---CceE
Q 003236 706 ISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTG---NKFH 772 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h-~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~--------~~~---~~I~ 772 (837)
|++|++.++.++..+... .....++.++..+..++.|+ ++.+++....++ +.+.... .+. ..|.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence 999999999999888743 34577889999999999998 888998888777 3333333 222 3344
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+.++..-+..++|+-||+|.|||+...++.....|...|+.+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 55566667888999999999999999999988889999999999998 78999999999999997
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.6e-30 Score=279.65 Aligned_cols=282 Identities=22% Similarity=0.400 Sum_probs=255.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
+.+..|+.+|.||.|+|...+++++-..|.|.|||.++...++.+.....+|.+..|-...+++++|+.|..|+||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34556899999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCC-CeeEEEEecC-CCEEEEEEcCCe
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQS-GATQMRFQPR-LGRILAAAIENY 705 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~-~i~sl~~sp~-g~~llags~dg~ 705 (837)
.+. ++.+..|...|.||+.+|...+ +++++.|-+|++||.+. ..|..+|..+. -|.+++|.|. .+.+++++-|++
T Consensus 87 ~ek-V~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 87 GEK-VKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred cee-eEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 775 8999999999999999999775 45999999999999976 46777887654 4899999995 567899999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCC--CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg--~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
|+||.+.+..+..++.+|...|+|+++-+.| .+|++|+ |.+|+|||..+. .|+.++.+|...|..++|+|.-+.
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpi 241 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPI 241 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcE
Confidence 9999999999999999999999999998754 6999999 779999999987 899999999999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 783 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
|++|+.||+|+||+..+.+.. .+.-....|+||+-.+.++.++.|.+.|.|.|
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999999999888776 55556678999999999999999999888764
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.4e-29 Score=279.85 Aligned_cols=309 Identities=20% Similarity=0.277 Sum_probs=259.3
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
-.+++.|..|+.|++|..... ....++.+|...|+++.|+..|..||+|+.|+.|.|||+-
T Consensus 77 ~l~lAVGYaDGsVqif~~~s~-------------------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV 137 (888)
T KOG0306|consen 77 ILLLAVGYADGSVQIFSLESE-------------------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLV 137 (888)
T ss_pred cceEEEEecCceEEeeccCCC-------------------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEec
Confidence 346799999999999944322 2356788999999999999999999999999999999998
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-----------------------------------
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----------------------------------- 630 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~----------------------------------- 630 (837)
...-...+++|++.|+..-|..+.++|++++.|+.|++||+++..
T Consensus 138 ~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 138 GEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWE 217 (888)
T ss_pred cceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEE
Confidence 888888888888888888888777888888888888888876110
Q ss_pred --------------------------------------------------------------------------------
Q 003236 631 -------------------------------------------------------------------------------- 630 (837)
Q Consensus 631 -------------------------------------------------------------------------------- 630 (837)
T Consensus 218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~ 297 (888)
T KOG0306|consen 218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE 297 (888)
T ss_pred eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence
Q ss_pred ------------------------------------ce------------------------------eEEeeccccceE
Q 003236 631 ------------------------------------YS------------------------------LRTFTGHSTTVM 644 (837)
Q Consensus 631 ------------------------------------~~------------------------------~~~~~~h~~~V~ 644 (837)
.. ...+.+|...|.
T Consensus 298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR 377 (888)
T KOG0306|consen 298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR 377 (888)
T ss_pred ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence 00 012335777788
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~ 724 (837)
+++++.+. .++++++ .+.|++|+..+.+|++++.+. -+.+..|.|.++++++|...|.+.+||+.+...+.++..|.
T Consensus 378 sl~vS~d~-~~~~Sga-~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd 454 (888)
T KOG0306|consen 378 SLCVSSDS-ILLASGA-GESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD 454 (888)
T ss_pred EEEeecCc-eeeeecC-CCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc
Confidence 88888764 3444544 789999999999999999985 88899999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-----CCceeEE----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 725 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-----SKGECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~-----~~~~~i~----~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
+.|.+++.+||++.+++++ |.+|++||+.-- ...+.+. ..-.-...|.++.+|||+++|+++--|.+|+|
T Consensus 455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkV 534 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKV 534 (888)
T ss_pred cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEE
Confidence 9999999999999999999 999999997521 1111111 11123577999999999999999999999999
Q ss_pred EECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 795 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 795 wDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
|-+++-+.. .+++|.-+|.|+.++||+++++|||.|.+|+||
T Consensus 535 yflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 535 YFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 999999876 899999999999999999999999999999999
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.7e-31 Score=272.41 Aligned_cols=267 Identities=21% Similarity=0.398 Sum_probs=233.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
......|+|+.+. ...+++|..|++|+|||..+..+...+.+|++.|.|+.|. .+.|++||.|.+|+|||+.+++
T Consensus 194 Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge- 268 (499)
T KOG0281|consen 194 SENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGE- 268 (499)
T ss_pred cccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCc-
Confidence 3456779999985 4589999999999999999999999999999999999995 5699999999999999999977
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---eEEe-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK-CQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i---~~~~-~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
++.++.+|...|..+.|+ +.++++|+.|.+|.+||+.....+ +++. +...|+.+.|+. ++|++++.|.+|+
T Consensus 269 ~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTik 343 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIK 343 (499)
T ss_pred hhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEE
Confidence 589999999999999998 448889999999999999875532 2222 245677787764 5999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+|++.+++.+.++.+|...|-|+.+ .++++++|+ |.+|++||+..+ .++..+.+|+.-|.++.|.. +.|++|
T Consensus 344 vW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd~--krIVSG 416 (499)
T KOG0281|consen 344 VWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFDN--KRIVSG 416 (499)
T ss_pred EEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeecC--ceeeec
Confidence 9999999999999999999998887 589999999 999999999998 89999999999999999965 479999
Q ss_pred EcCCeEEEEECCCCc---------E-EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 787 GCYETLELWNMTENK---------T-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 787 s~dg~I~IwDl~s~~---------~-~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.||+|+|||+..+. + ..+..|.+.|..+.|. ...|++++.|.+|.|||
T Consensus 417 aYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 417 AYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD 475 (499)
T ss_pred cccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence 999999999997653 1 2567899999999986 56799999999999997
No 40
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=3.2e-29 Score=250.33 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=240.3
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
.+.+|..+|+-|.|+.+|.+|++++.|.++.||-..+|+.+-++.+|.+.|+||..+.+.++++||+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEEeeccccceEEEEEcCCCCeEEEEEe----CCCcEEEEECC-------CCeeeeEEe-cCCCeeEEEEecCCCEE
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSIN-------NGSCAGVFK-CQSGATQMRFQPRLGRI 697 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~~llasgs----~Dg~I~vwDl~-------t~~~i~~~~-~~~~i~sl~~sp~g~~l 697 (837)
+. +..+. ...+|..+.|+++|+.++++.. ..+.|.++|++ ..++...+. ..+.++.+.|.|-+..|
T Consensus 85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 85 44443 4678999999999887776553 34789999998 344444444 46789999999999999
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 698 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 698 lags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
++|..+|.|.+||++++ +.+.....|...|+.+.+++|..++++++ |.+-++||+++. .++.++.. ..++++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence 99999999999999998 55566678999999999999999999999 999999999987 66666654 67899999
Q ss_pred EeCCCCEEEEEEcCCe--EEEEECCCCc------------EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 776 FHPTFPSLLVIGCYET--LELWNMTENK------------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 776 fspdg~~L~sgs~dg~--I~IwDl~s~~------------~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
++|-..+++.|+.... |.--+.+.++ .+ ++.+|-++|++++|+|+|+..++|+.||.|+|.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999998888877553 2222333332 22 678999999999999999999999999999984
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4e-28 Score=255.34 Aligned_cols=267 Identities=30% Similarity=0.536 Sum_probs=236.1
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++++.|+.+.+|...... ....+..|...|.++.|++++++|++++.||.|++||+.
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGE-------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCC-------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 4678888889999999654331 345567899999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
+++.+..+..|...|.++.|++++.++++++.|+.|++||+.+.+ ....+..|...|.+++|+|++. ++++++.|+.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcE
Confidence 988888888999999999999998889988889999999998654 3666778999999999999854 66677779999
Q ss_pred EEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++||+++++.+..+..+. .+.++.|+|++..+++++.++.|.+||++.++.+..+..|...|.+++|++++.++++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence 999999888887777544 799999999999999999999999999999998888888999999999999999999998
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
|+.|++||+.++ ..+..+..+...+.+++|++++..|++++.|+.|++|+
T Consensus 240 ~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 240 DGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999876 56667778888999999999999999999999999996
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.5e-29 Score=270.44 Aligned_cols=272 Identities=20% Similarity=0.292 Sum_probs=243.3
Q ss_pred CccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 003236 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (837)
Q Consensus 500 ~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I 579 (837)
..+.+.+.++.++-..++|.+|..... ..++.+.-..-+|.++.|-+..+++++|+.|..|
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetq-------------------tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~I 79 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQ-------------------TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQI 79 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecccc-------------------eeeeeeeecccchhhheeeeccceEEEecCCceE
Confidence 345667788899999999999955332 3466677778889999999999999999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
+||+..+++.+..++.|.+.|.||+.+|...+++|+|.|-+|++||.+..-.+..++.+|...|++++|+|....-++++
T Consensus 80 rVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 80 RVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred EEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred eCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC
Q 003236 660 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 736 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g--~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg 736 (837)
+-|++|+||.+....+..++.. ..+|+|++|-+.+ .++++|+.|..|+|||..+..|+.++.+|...|..++|+|.-
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l 239 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL 239 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC
Confidence 9999999999999998888875 5689999998754 589999999999999999999999999999999999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 737 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 737 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
.+|++|+ ||+|+||+..+- +...++.-....+++++-.+.+..+++|..+|.|.
T Consensus 240 piiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred cEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999999 999999998776 44555556678899999888888888877776543
No 43
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=7.9e-29 Score=246.92 Aligned_cols=282 Identities=18% Similarity=0.261 Sum_probs=250.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE--EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD 625 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~--~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWD 625 (837)
+.+.+|..+|.+|+|+-+|..|++|+.|+++.||+++..+... ...+|.+.|-.++|+| ....|++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5567999999999999999999999999999999998775553 3468999999999998 467899999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~ 705 (837)
+..++....+.. ...-.-+.|+|+|.+ ++.++.|..|.+.|.++.+..........+..++|+.++..++.....|.
T Consensus 94 ~r~~k~~~~i~~--~~eni~i~wsp~g~~-~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCTARIET--KGENINITWSPDGEY-IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEEEEeec--cCcceEEEEcCCCCE-EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998775443332 233346889999875 55788899999999999999988888889999999988888888888899
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
|.|.....-+++..++.|.....||.|+|+|+|||+|+ |..+.+||+... .|++.+..+.-+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence 99999999999999999999999999999999999999 999999999776 78899999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC---------CcEEEe
Q 003236 785 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW 836 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D---------G~I~IW 836 (837)
+++.|..|-|-++++|..+....++++...++|+|...+||.+++| |.|+||
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 9999999999999999999888999999999999999999988865 567765
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=283.15 Aligned_cols=280 Identities=26% Similarity=0.424 Sum_probs=240.7
Q ss_pred cCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003236 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (837)
Q Consensus 497 ~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~D 576 (837)
+....+.....++++++.|+.+++|....... .....+.+|...|.+++|+||++++++++.|
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D 224 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDD 224 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCcEEEEecCC
Confidence 33344555667899999999999996622210 2345558999999999999999999999999
Q ss_pred CcEEEEeC-CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeE
Q 003236 577 KKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 577 g~I~VWd~-~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||+++++ ++..+.+|...|.+++|++++. +
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~-~ 302 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGN-L 302 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCC-E
Confidence 99999999 5668999999999999999999999999999999999999999854 6999999999999999999987 5
Q ss_pred EEEEeCCCcEEEEECCCCe--eeeEEecC-C--CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE---
Q 003236 656 LCSCDNNSEIRYWSINNGS--CAGVFKCQ-S--GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV--- 727 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t~~--~i~~~~~~-~--~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V--- 727 (837)
+++++.|+.|++||+.++. ++..+... . .+.++.|+|++.++++++.|+.+++||+..+.++..+.+|...+
T Consensus 303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~ 382 (456)
T KOG0266|consen 303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI 382 (456)
T ss_pred EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeE
Confidence 5577889999999999999 45555432 2 47999999999999999999999999999999999999988753
Q ss_pred EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 003236 728 HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 798 (837)
Q Consensus 728 ~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs--~dg~I~IwDl~ 798 (837)
.+...++.+.++++++ |+.|++||+.++ ..+..+..| ...+..+.+++...++++++ .|+.|++|...
T Consensus 383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 383 FSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 3445577899999999 999999999986 667777888 88899999999999999998 67899999754
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=7e-30 Score=252.53 Aligned_cols=279 Identities=21% Similarity=0.268 Sum_probs=247.2
Q ss_pred EecCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 550 LIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSp---dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
+..+|+.+|..++||| +|-+|++++.|+.-.+-+-+++.-+.++.+|.+.|+...++.+...-++++.|-+.+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4469999999999986 8989999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEE-ecCCCeeEEEEecCCCEEEEEEcCC
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~-~~~~~i~sl~~sp~g~~llags~dg 704 (837)
-++.. +..+. |..-|.+++|+.|.++++ +|+.+..++|||++..+. ...+ .+.+.|..+.|....+.|++++.|+
T Consensus 89 ~tgde-lhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 89 VTGDE-LHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhh-hhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 98774 55544 888899999999976555 999999999999986542 2233 3567899999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
.|++||.++++.+..+. ...+|+++.++++|++|.++..+.|++||..+. ..+..++ ....|.+..++|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k-~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYK-MPCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeecc-CccccccccccCCCceEE
Confidence 99999999999999887 678899999999999999988889999999876 4444443 356788999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 785 VIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~~~~~--l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+|+.|..++.||..+++.+. ..+|.++|.|+.|+|+|...++|+.||+|+||
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 99999999999999999883 37999999999999999999999999999999
No 46
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.4e-30 Score=260.56 Aligned_cols=280 Identities=23% Similarity=0.360 Sum_probs=246.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec--------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--------~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
+..+.+.|..|||||.||++|+.||.|.|||..+|+..+.++ -+...|.|++|+.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445568899999999999999999999999999988765543 478899999999999999999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~d 703 (837)
.+.++.+..+.-..|+..|+|+.|+.|+..++ +++.|.++++.-+++|++++.++.+ +-|+...|.++|.++++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99998864444458999999999999988666 8999999999999999999999865 458899999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcC--CCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEE
Q 003236 704 NYISILDVETQVCRLKLQG--HKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVF 776 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~--h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~sv~f 776 (837)
|+|++|+.++.+|+.+++. ...+|.++..-|.+ ..+++|. .++|+|.++.. ..++.+.. .++.+.++++
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence 9999999999999988875 45578888887754 5677777 88999998864 35555443 4577899999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 777 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 777 spdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|.|.++++.+.|+.++.|.+.+|++. .+..|+..|..++-+|.-++||+-+.||.+++|+
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999999987 6778999999999999999999999999999996
No 47
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3.5e-30 Score=264.30 Aligned_cols=267 Identities=19% Similarity=0.403 Sum_probs=229.4
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
.+..+++|..|.+|++|+..+- .+.+.+.||++.|.|+.|. .+.|++|+.|.+|+|||+
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~-------------------~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSL-------------------ECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDV 264 (499)
T ss_pred cchhhhcccccCceEEeccccH-------------------HHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEec
Confidence 3466789999999999955432 3467788999999999995 569999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
.+++++.++-+|.+.|..+.|+. .+++++|.|.+|.|||+..... +.+.+.||...|+.+.|+ ..++++++.|
T Consensus 265 ~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgD 339 (499)
T KOG0281|consen 265 NTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGD 339 (499)
T ss_pred cCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCC
Confidence 99999999999999999999974 5999999999999999987552 346788999999999998 3488899999
Q ss_pred CcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 663 SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
.+|++|++.++++++++.. ..+|.|+.+ .++.+++|+.|++|++||++.|.++..+.+|+.-|.|+.|+ .+.|++
T Consensus 340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVS 415 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVS 415 (499)
T ss_pred ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeee
Confidence 9999999999999999875 456777765 46789999999999999999999999999999999999994 677888
Q ss_pred Ee-CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 742 VS-DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 742 gs-Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
|. ||+|+|||+..+... -|+..+..|.+.|..+.|..- .|++++.|.+|.|||..++...
T Consensus 416 GaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f--qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce--EEEeccCCCeEEEEEcCCCCcc
Confidence 88 999999999875432 366677778889999998644 6899999999999998877544
No 48
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.1e-29 Score=266.63 Aligned_cols=283 Identities=20% Similarity=0.340 Sum_probs=247.7
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.++++++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 345678999999999999998899999999999999987666 677888888999999999999999999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg 704 (837)
++..... ..++.+|.+.|+++.|...... +++|+.|.+|++||+....|.+++-..+.+..|+.. ...++++..|+
T Consensus 247 nvd~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dk 322 (459)
T KOG0288|consen 247 NVDSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDK 322 (459)
T ss_pred eccchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeeccccc
Confidence 9998664 7899999999999999877554 779999999999999999999888777777777776 35678888999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC----CCceEEEEEeCC
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPT 779 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~----~~~I~sv~fspd 779 (837)
.|++||.++..++.....+. .|+++..++++..|.+++ |+++.++|+++. .....+... ....+.++|||+
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred ceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCC
Confidence 99999999999999888665 999999999999999988 999999999987 444444432 345889999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-Eecc-CC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 780 FPSLLVIGCYETLELWNMTENKTL-TLSA-HD-KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~~~~-~l~~-h~-~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.|+++|+.||.|+||++.++++. .+.. +. ..|++++|+|.|..|++++.++.+.+|.
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999987 3332 22 3699999999999999999999999994
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=4.8e-29 Score=257.24 Aligned_cols=245 Identities=22% Similarity=0.448 Sum_probs=223.4
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
..+..+.+.+|.++|.|+++.|.+.+|++|+.|++|+|||+.++.. ..++.+|...|..+++++...++| +++.|+.|
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-kltltGhi~~vr~vavS~rHpYlF-s~gedk~V 217 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-KLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQV 217 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-EEeecchhheeeeeeecccCceEE-EecCCCee
Confidence 3566778899999999999999999999999999999999999764 788899999999999999877555 88999999
Q ss_pred EEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++||++..+.++.+.. -+.|.|+..+|.-..|++++.|..++|||+++...+..+.+|..+|..+.+.|....+++|+
T Consensus 218 KCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 218 KCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 9999999999887764 57899999999999999999999999999999999999999999999999999888899999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCC
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~ 822 (837)
|++|++||++.+ +....+..|...+.+++.+|....+++++.| .|+-|++..+..+ .+.+|...|++++...|+
T Consensus 298 D~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 298 DSTVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-
Confidence 999999999998 7788888899999999999998877777766 6999999999887 788999999999987665
Q ss_pred EEEEEECCCcEEEeC
Q 003236 823 MVASASHDKCVKIWK 837 (837)
Q Consensus 823 ~LaSgs~DG~I~IWd 837 (837)
++++|++.|.|.+||
T Consensus 373 v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWD 387 (460)
T ss_pred eEEEcCCceEEEEEe
Confidence 788999999999997
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.7e-27 Score=240.95 Aligned_cols=283 Identities=22% Similarity=0.297 Sum_probs=239.0
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV 623 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~--Dg~I~I 623 (837)
+..+.++.-.+.|+++.|+++|.+|++++.|.+|+|||..+++...++..++..|..++|......++.++. |.+|+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 334556667788999999999999999999999999999999999999999899999999888777877776 889999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d 703 (837)
.++.++++ ++.+.||...|.+|+.+|-++ .+++++.|++|++||++..+|...+.. ..-..++|.|.|-.++++...
T Consensus 85 Lsl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 85 LSLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEEecCC
Confidence 99999776 999999999999999999975 566999999999999998888877765 445568899998888888888
Q ss_pred CeEEEEECCCC--eEEEEEc---CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc---eEEE
Q 003236 704 NYISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSC 774 (837)
Q Consensus 704 g~I~iwDl~s~--~~~~~l~---~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~---I~sv 774 (837)
+.|++||++.- .+..++. +.....+.|.|+|||++|+.+. .+.+++.|.-+| ..+..+..+... -..+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G---~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG---TVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC---cEeeeEeeccCCCCcceeE
Confidence 89999999863 3333333 3467889999999999999888 789999999888 455555544332 3788
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~-h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+|+||+++|++|+.||+|.+|++++++.+ .+.+ +..++.++.|+|.-.++++++ ..+.+|
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW 300 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence 99999999999999999999999999988 5555 789999999999877777664 467777
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4e-28 Score=273.35 Aligned_cols=282 Identities=21% Similarity=0.370 Sum_probs=249.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
+...+..|..++|+|...+++++-..|.|.+||..-+.++..|..|.++|..|+|+|...++++|+.|-.|+||+..+.+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 44556779999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEE
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISIL 709 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~llags~dg~I~iw 709 (837)
++.++.+|-..|..+.|++.-..++ ++++|-+|+||+..+++|+..+..+. -|.|..|+|....+++++-|-+|+||
T Consensus 85 -clftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 85 -CLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred -ehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 5889999999999999999977655 99999999999999999999998755 48999999999999999999999999
Q ss_pred ECCCC-----------------------------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003236 710 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 759 (837)
Q Consensus 710 Dl~s~-----------------------------~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 759 (837)
|+..- .....+.+|...|+-++|+|.-.+|++|+ |..|++|.+...+. -
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence 98521 12345678999999999999999999999 78999999876432 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.+.+..+|.+.|.++.|+|....|++.+.|++|+|||+.....+ ++....+..+.++.+|..++++.|- |+-+.||
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEE
Confidence 56677899999999999999999999999999999999998887 5656677899999999999888774 5445554
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.7e-27 Score=237.30 Aligned_cols=270 Identities=21% Similarity=0.379 Sum_probs=221.2
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEe-cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l-~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
..++++++.|+.|++|.... +..+.+..++ .+|+..|.+|+|+|.|++||+|+.|.++.||.-
T Consensus 27 g~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 45899999999999996543 1224445455 379999999999999999999999999999975
Q ss_pred C--CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 585 E--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 585 ~--t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
. ..+++.++++|...|.|++|+++|.+||||+.|+.|-||.+.... .+...+..|...|..+.|+|... +|++++
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEec
Confidence 4 467889999999999999999999999999999999999998433 35678899999999999999854 888999
Q ss_pred CCCcEEEEECC---CCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC
Q 003236 661 NNSEIRYWSIN---NGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG 736 (837)
Q Consensus 661 ~Dg~I~vwDl~---t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg 736 (837)
.|.+|++|+-. .-.++.++..+ ..|.+++|++.|..+++++.|++|+||-..+.-. ..|...++.+.|. .
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~ 243 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--N 243 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--c
Confidence 99999999876 23567777654 4799999999999999999999999998663211 1378899999998 4
Q ss_pred CEEEEEe-CCeEEEEEcCCCCC---ce-eEEEeecCCCceEEEEEeCC-CCEEEEEEcCCeEEEEECC
Q 003236 737 EYLASVS-DELVRVWSIGSGSK---GE-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 737 ~~Lasgs-Dg~I~IwDl~s~~~---~~-~i~~~~~~~~~I~sv~fspd-g~~L~sgs~dg~I~IwDl~ 798 (837)
..|++++ |+.|++|....... .. .......|+..|+++.|.|. ...|++++.||.|++|.+.
T Consensus 244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 4566666 99999998764311 11 12234568889999999995 6789999999999999864
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=242.74 Aligned_cols=268 Identities=20% Similarity=0.344 Sum_probs=232.0
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
.+.++++|+.|..|.+|...++. +.+.++++|.+.|..+.|.+|+..|++++.|++|+.||+
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdc------------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDC------------------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred CCCeEeecCCcceEEEEeccccc------------------cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 44789999999999999765543 225567799999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
++++.++.+++|.+.|+.+.-+.-| .++.+++.|++++|||++... .++++. ....++++.|...+..++ +|+-|+
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn 196 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDN 196 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhccc-cceeEEEEEeccccccee-eccccC
Confidence 9999999999999999999844433 467788999999999999754 355443 456799999998877665 899999
Q ss_pred cEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC----CeEEEEEcCCCC----CEEEEEEcC
Q 003236 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQGHKN----QVHSVCWNT 734 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s----~~~~~~l~~h~~----~V~sl~~sp 734 (837)
.|++||++......++.. ...|+.+..+++|.++++-+.|+++++||++- ..++..+.+|.. ....++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 999999999999998886 45799999999999999999999999999985 356777777533 445789999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 735 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 735 dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
++.++.+++ |..+++||.... .++..+.+|.+.|.++.|+|...+|.+++.|.+|++=.
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999 999999999876 78999999999999999999999999999999998744
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.8e-27 Score=247.91 Aligned_cols=278 Identities=21% Similarity=0.326 Sum_probs=235.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg---~~Latgs~Dg~I~IWDl~~~ 629 (837)
-|.+.|.+|... ++++++|++||.++|||. .|+.+..+.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 478888888887 679999999999999995 578999999999999998886533 35999999999999999876
Q ss_pred Ccee---EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-------------------------eeeeEEe-
Q 003236 630 DYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-------------------------SCAGVFK- 680 (837)
Q Consensus 630 ~~~~---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-------------------------~~i~~~~- 680 (837)
...+ ....||...|-++...+++. .+++|+.|..|.+|+..+. .++..+.
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 5433 34459999999999999976 6779999999999993211 1111222
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003236 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 759 (837)
Q Consensus 681 ~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 759 (837)
+...|.++.|++ ...+++++.|.+|+.||+.++.++.++. ....++|+..+|...+|++|+ |..|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 245688899988 6889999999999999999999888887 457899999999999999999 9999999999987667
Q ss_pred eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCc-EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~-L~sgs~dg~I~IwDl~s~~-~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
....+.+|.+.|.++.|+|...+ |++++.|+++++||+++.+ .+ .+.+|...|.++.|. ++.+|++|+.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 78889999999999999998765 6678889999999998876 44 888999999999996 57799999999999997
Q ss_pred C
Q 003236 837 K 837 (837)
Q Consensus 837 d 837 (837)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.4e-27 Score=245.92 Aligned_cols=270 Identities=20% Similarity=0.344 Sum_probs=231.9
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC---EEEEEECCCcE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKA 579 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~---~Lasgs~Dg~I 579 (837)
.....++.+|+.|+.+++|.... .....+.+|.++|.+++|.-... .|++++.|.++
T Consensus 112 ~~~~~~IltgsYDg~~riWd~~G--------------------k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 112 KGASKWILTGSYDGTSRIWDLKG--------------------KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred cccCceEEEeecCCeeEEEecCC--------------------ceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 44478999999999999995533 24677889999999888865333 59999999999
Q ss_pred EEEeCCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC------------------------Cc
Q 003236 580 VLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DY 631 (837)
Q Consensus 580 ~VWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~------------------------~~ 631 (837)
++|..+.+... ....+|...|-+|...+++..+++||.|.+|.||+.... +.
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 99988766543 344599999999999999999999999999999993311 13
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl 711 (837)
++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.++..+..+..+.|+.++|....|++|+.|..|++||.
T Consensus 252 P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred ceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence 4667889999999999998 34788999999999999999999999999999999999999999999999999999999
Q ss_pred CCC---eEEEEEcCCCCCEEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 712 ETQ---VCRLKLQGHKNQVHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 712 ~s~---~~~~~l~~h~~~V~sl~~spdg~~-Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+++ .....+.+|.+.|.++.|+|...+ |++++ |+++++||+++.. ..+..+..|...|.++.|... ..|++|
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSG 406 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSG 406 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEec
Confidence 975 456788899999999999997765 55666 9999999999873 488899999999999999855 469999
Q ss_pred EcCCeEEEEEC
Q 003236 787 GCYETLELWNM 797 (837)
Q Consensus 787 s~dg~I~IwDl 797 (837)
+.|.+|+|+.-
T Consensus 407 GaD~~l~i~~~ 417 (423)
T KOG0313|consen 407 GADNKLRIFKG 417 (423)
T ss_pred cCcceEEEecc
Confidence 99999999864
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-27 Score=237.39 Aligned_cols=276 Identities=21% Similarity=0.364 Sum_probs=229.8
Q ss_pred EEEEEcC--CCCEEEEEE-------CCCcEEEEeCCCCeEEEEec--cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEc
Q 003236 559 ESCHFSP--DGKLLATGG-------HDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDT 626 (837)
Q Consensus 559 ~sl~fSp--dg~~Lasgs-------~Dg~I~VWd~~t~~~~~~l~--~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl 626 (837)
.++.||| +++ ||++. ..|++.|-++...+-+..+. .-.+.+.+++|+++ .+.+++++.||+++|||+
T Consensus 12 ysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccch-hheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 5788998 443 33332 36889999986443333322 35678999999995 678899999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecC-CCEEEEEEcCC
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPR-LGRILAAAIEN 704 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~-g~~llags~dg 704 (837)
.....++..++.|...|.++.|++..+..+++++.|++|++|+......+.++.. ...|....|+|. .+.+++++.|+
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 8888899999999999999999998888888999999999999999999999886 456889999995 56677888999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-C
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-P 781 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~ 781 (837)
.+++||++..-....+..|...|.|+.|+. +...|++++ |+.|++||+++-. .++.++.+|+-.|..+.|+|.. .
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhh
Confidence 999999997654555888999999999997 456777777 9999999999875 5688889999999999999976 4
Q ss_pred EEEEEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003236 782 SLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~sp-dg~~LaSgs~DG~I~IWd 837 (837)
.|++++.|-+++|||.....-. +...|..-|..+.|++ +..++|+++.|+.++||+
T Consensus 249 lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred HhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 5777888889999998755433 6668899999999997 557999999999999996
No 57
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=2.7e-26 Score=282.02 Aligned_cols=286 Identities=14% Similarity=0.224 Sum_probs=225.8
Q ss_pred cCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEEC
Q 003236 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGH 575 (837)
Q Consensus 497 ~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~ 575 (837)
+....+...+.++++|+.|+.|++|........ . .... ..+..+. +...|.+++|++ ++.+||+++.
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~----~------~~~~-~~~~~~~-~~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKD----G------RDIH-YPVVELA-SRSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCccccc----c------cccc-cceEEec-ccCceeeEEeccCCCCEEEEEeC
Confidence 334445566789999999999999965331100 0 0000 0112222 346799999987 5789999999
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
||+|+|||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+.++.. +..+..+ ..|.++.|++....
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~ 631 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGR 631 (793)
T ss_pred CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCC
Confidence 99999999999999999999999999999997 789999999999999999987653 5555544 67999999766566
Q ss_pred EEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC------CeEEEEEcCCCCC
Q 003236 655 LLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQ 726 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s------~~~~~~l~~h~~~ 726 (837)
++++|+.||.|++||+++.+ .+..+. +...|.++.|. ++..+++++.|+.|++||++. ..++..+.+|...
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 88899999999999998765 344443 45679999997 678999999999999999974 3567889999999
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcee--------E--EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 727 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC--------I--HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~--------i--~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
+.+++|++++.+|++|+ |+.|+||+......... + .....+...|.+++|++++..|++++.+|.|+||
T Consensus 711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~ 790 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL 790 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence 99999999999999999 99999999865421100 0 0112344569999999999999999999999999
Q ss_pred EC
Q 003236 796 NM 797 (837)
Q Consensus 796 Dl 797 (837)
++
T Consensus 791 ~~ 792 (793)
T PLN00181 791 EM 792 (793)
T ss_pred ec
Confidence 96
No 58
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=254.75 Aligned_cols=280 Identities=16% Similarity=0.310 Sum_probs=235.9
Q ss_pred EEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
.+..+.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|++.. ..+++++.|++|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 356779999999999999976 6899999999999999999999999999999999999986 6799999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEE-cC
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAA-IE 703 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags-~d 703 (837)
++.+ +++++.+ ...+..|+-+.. ...+++|+. .|.|||.....++..+... ..|.++.|+|....|++++ .|
T Consensus 136 ~~~~--p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 136 IDGP--PLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ccCC--cceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 9863 4566654 345667776654 347778864 5999999988888888764 4589999999876665554 89
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+.|.+||++...++..+. -...-+.|+|+|.+..+++++ |..++.||++... ..+.....|.+.|.++.|+|.|..
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcch
Confidence 999999999998877665 344567899999777777777 8899999999764 677788899999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~~l~--~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++|+.|.+|+||.+..+....+. .--..|.|+.||.|.++|++||+|+.|++|+
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999887655322 2234699999999999999999999999996
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=254.15 Aligned_cols=289 Identities=17% Similarity=0.258 Sum_probs=233.6
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE----EEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTL-EEHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~----~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
.....+.+|+..|+++++.|.|-.|++|+.|.+|++||...... .+.+ ......|.++.|++.+..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 34566889999999999999999999999999999999864322 1222 234457999999999999999999999
Q ss_pred EEEEEcCCCCce-----------eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEec------C
Q 003236 621 VRVWDTENPDYS-----------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC------Q 682 (837)
Q Consensus 621 I~IWDl~~~~~~-----------~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~------~ 682 (837)
++|+|-+..... +...++|...++|.+|+|+....|++|+.||++++||+...+ ...++.. .
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 999997643210 123468999999999999999999999999999999997644 3444443 2
Q ss_pred CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--E-EEEEcCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003236 683 SGATQMRFQPRLGRILAAAIENYISILDVETQV--C-RLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 683 ~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~--~-~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
-.++.++|+++++.|++|+.||.|.+||..+.. + ...-..|.. .|+||.|++||++|++-+ |+++++||++..+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 247899999999999999999999999986542 2 223345776 899999999999999988 9999999999875
Q ss_pred CceeEEEeec--CCCceEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003236 757 KGECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 757 ~~~~i~~~~~--~~~~I~sv~fspdg~~L~sgs~------dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg 827 (837)
+++....+ ....-+.|+|+|+.+.|++|.+ .+.+++||..+...+ ++.-....|..+.|+|.-+.|+.|
T Consensus 398 --kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 398 --KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred --cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 44444433 3445688999999999999865 358999999888877 555567889999999999999999
Q ss_pred ECCCcEEEe
Q 003236 828 SHDKCVKIW 836 (837)
Q Consensus 828 s~DG~I~IW 836 (837)
+.||+++||
T Consensus 476 sgdG~~~vy 484 (641)
T KOG0772|consen 476 SGDGTAHVY 484 (641)
T ss_pred cCCCceEEE
Confidence 999999986
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.5e-27 Score=271.12 Aligned_cols=247 Identities=21% Similarity=0.316 Sum_probs=206.7
Q ss_pred eEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--------------------------------------
Q 003236 546 TEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------- 586 (837)
Q Consensus 546 ~~~~~l~-~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-------------------------------------- 586 (837)
...+.+. +|.+.|+++.||+||+|||+||.|+.|+||.+..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3445566 9999999999999999999999999999996543
Q ss_pred ----------------------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceE
Q 003236 587 ----------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (837)
Q Consensus 587 ----------------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~ 644 (837)
.+++..+.+|.+.|.+|.|+.+ .+|+++|.|++|++|++.... ++..|. |...|+
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfVT 413 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFVT 413 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCeeE
Confidence 0112234589999999999965 689999999999999999644 566665 999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-- 722 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~-- 722 (837)
|++|+|.++++|++|+-||.|+||+|...+.+.......-|++++|.|+|+..++|+.+|.+++|+....+....+..
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 999999999999999999999999999999998888889999999999999999999999999999998766554321
Q ss_pred C------CCCEEEEEEcCCCC--EEEEEeCCeEEEEEcCCCCCceeEEEeecCC--CceEEEEEeCCCCEEEEEEcCCeE
Q 003236 723 H------KNQVHSVCWNTSGE--YLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 723 h------~~~V~sl~~spdg~--~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~--~~I~sv~fspdg~~L~sgs~dg~I 792 (837)
| ...|+.+.|.|... +|++..|..|+|||.+.. ..+..+++.. ..-....|+.||++|++++.|..|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 1 22799999987543 666666999999999776 4555655432 344677899999999999999999
Q ss_pred EEEECC
Q 003236 793 ELWNMT 798 (837)
Q Consensus 793 ~IwDl~ 798 (837)
+||++.
T Consensus 571 YiW~~~ 576 (712)
T KOG0283|consen 571 YIWKND 576 (712)
T ss_pred EEEeCC
Confidence 999973
No 61
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=4.4e-26 Score=263.15 Aligned_cols=249 Identities=16% Similarity=0.209 Sum_probs=204.0
Q ss_pred EECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc-------eeEEeeccccceE
Q 003236 573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM 644 (837)
Q Consensus 573 gs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~-------~~~~~~~h~~~V~ 644 (837)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+... ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998888888899999999999999996 78999999999999999976431 2446788999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~ 724 (837)
+++|+|++..++++++.|++|++||++++..+..+.+...|.++.|+++|..|++++.|+.|+|||++++..+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 99999998888889999999999999999888777777889999999999999999999999999999999999999998
Q ss_pred CCEEEE-----EEcCCCCEEEEEe-CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 725 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 725 ~~V~sl-----~~spdg~~Lasgs-Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
+.+.+. .|++++.+|++++ |+ .|+|||++..........+..+.+.+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765432 3458888888876 54 7999999964322222233333344444445566888999999999999
Q ss_pred EECCCCcEEEe--ccCCCCeeEEEEeCCC
Q 003236 795 WNMTENKTLTL--SAHDKLVSSLAASTVN 821 (837)
Q Consensus 795 wDl~s~~~~~l--~~h~~~V~sla~spdg 821 (837)
|++..+....+ ..+..++.+++|.|+.
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEcccc
Confidence 99988765433 3466788999999965
No 62
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.9e-27 Score=241.39 Aligned_cols=287 Identities=25% Similarity=0.387 Sum_probs=239.8
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC------------------CeEEEEeccCCCCeEEEEEcCC
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSPS 608 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------------------~~~~~~l~~h~~~I~~l~fspd 608 (837)
+-..+..|..++.+.+|++||.++|+|+.|..|+|.|++. .-.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 3455778999999999999999999999999999999761 1356788899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCce-eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe----cCC
Q 003236 609 LSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQS 683 (837)
Q Consensus 609 g~~Latgs~Dg~I~IWDl~~~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----~~~ 683 (837)
...|++++.|++|++||+...... .........+|.+|.|+|.|++++ .|....++++||+++..|..... +.+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999999999864321 112223457899999999988555 77778899999999988876544 356
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-CC-CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcee
Q 003236 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC 760 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~-h~-~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~ 760 (837)
.|+++.+++.++..++++.||.|++||--+++|+.++.. |. ..|++..|..+++||++.+ |..|++|.+.++ .+
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R~ 339 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---RM 339 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---ce
Confidence 799999999999999999999999999999999988864 54 4799999999999999988 999999999998 67
Q ss_pred EEEeecCCC-----ceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 761 IHELSCTGN-----KFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 761 i~~~~~~~~-----~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
+.++.+.+. --+...|.....+++.-.. .+.++-||.++...+ .-.+|.+.+..+.-+|.+.-+++|++|-.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 777665421 1244567777777777665 348999999988766 34599999999999999999999999999
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
+++|.
T Consensus 420 aRFWy 424 (430)
T KOG0640|consen 420 ARFWY 424 (430)
T ss_pred eeeee
Confidence 99993
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.2e-27 Score=251.10 Aligned_cols=276 Identities=19% Similarity=0.275 Sum_probs=241.7
Q ss_pred CCCeEEEEEcCCCCE-EEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
.+.|++++|+|...+ +|+++ .-.|.||+..+.....++......|++++|..||++|+.|...|.|+|||+.+ +..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 356999999996554 44443 46799999998888888888899999999999999999999999999999554 5568
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCC-EEEEEEcCCeEEEEEC
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDV 711 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~-~llags~dg~I~iwDl 711 (837)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+. +...|.|.+|+|... .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 89999999999999999999999999999999999999988644444 356799999999765 6778999999999999
Q ss_pred CCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 712 ETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 712 ~s~-~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
+.. ..+.++. |..+|..+.+-|.|..|++++...|+|||+.++. ..+.....|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 987 6666665 9999999999999999999999999999999774 45555566999999999999999999999999
Q ss_pred eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 791 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 791 ~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
.|++||+.+.+.+.-..-.++|.+|+.+|++..++.|..||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999999998877778899999999999999999999998754
No 64
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=2.7e-28 Score=260.98 Aligned_cols=248 Identities=18% Similarity=0.296 Sum_probs=219.9
Q ss_pred CeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 587 FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
.+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++.....+++++.+|..+|.+++|+.+|..++ +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 356678899999999999999 7999999999999999999987778999999999999999999988666 89999999
Q ss_pred EEEECCCCeeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++||+++|+++..+.....++|+.|+|++ +.+++|+.|+.|+.||+++++.+.++..|-+.|..+.|-++|+.+++++
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999999999999999999999999998 7889999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EeccCC--CCeeEEEE
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHD--KLVSSLAA 817 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~----~l~~h~--~~V~sla~ 817 (837)
|+.++||+.+.+...+.+. ..+.....+|..+|.++++++-+.|+.|.+|.+...-.+ .+.+|. +.-..|.|
T Consensus 363 dks~riWe~~~~v~ik~i~--~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIA--DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhc--chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 8899999998874323222 233455678999999999999999999999987544332 566664 45677899
Q ss_pred eCCCCEEEEEECCCcEEEeC
Q 003236 818 STVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 818 spdg~~LaSgs~DG~I~IWd 837 (837)
||||.+|++|+.||.|.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
No 65
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.6e-27 Score=229.46 Aligned_cols=263 Identities=22% Similarity=0.292 Sum_probs=229.4
Q ss_pred cCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 504 ~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
...++..+.+.|.+|++|....+ ..++++.+|...|..++.+.|...|++|+.|+.|.+||
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg-------------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRG-------------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred cCCCEEEEcCCCceEEeeccccc-------------------ceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 34478888888999999955332 35788899999999999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
+++++.++.+.+|.+.|+.++|+.+...+++|+.|.++++||.+... .++.++......|.++... +..+++|+.|
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~D 164 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVD 164 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccC
Confidence 99999999999999999999999999999999999999999998654 4678888888999999998 4577899999
Q ss_pred CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEE--EEEEcCCCCEEE
Q 003236 663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH--SVCWNTSGEYLA 740 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~--sl~~spdg~~La 740 (837)
|+++.||++.|.....+- ..+|+|+.|+++++..++++.++.|++.|-++++.+..+++|.+.-. .++++.....++
T Consensus 165 GtvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred CcEEEEEeecceeehhhc-CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence 999999999988765543 47899999999999999999999999999999999999999987543 456777788999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCc-eEEEEEeCCCCEEEEEEcCCeE
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSCTGNK-FHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~-I~sv~fspdg~~L~sgs~dg~I 792 (837)
+|+ ||.|++||+... ..+..+..+... +.++.++|.-..|+++...+.+
T Consensus 244 sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred eccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeEecCCcee
Confidence 999 999999999887 677777777777 8999999998888877765533
No 66
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=236.70 Aligned_cols=276 Identities=19% Similarity=0.220 Sum_probs=239.2
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+..-|+.++|.|+.--+- .|.+-.-+.+|.+|.+.|++.+++.+....|+++.|-+.+|
T Consensus 25 itp~g~flisa~kd~~pmlr-------------------~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 25 ITPDGYFLISASKDGKPMLR-------------------NGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CCCCceEEEEeccCCCchhc-------------------cCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 34556678888776543221 11122237889999999999999999989999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
||.-++..+..+. |..-|..++|+.|.++|+||+.++.++|||++..+.+...+.+|.+.|..+.|......+| ++..
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSad 163 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSAD 163 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEE-eecc
Confidence 9999999999985 8899999999999999999999999999999999988999999999999999998766565 6688
Q ss_pred CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
|++|++||.++++.+..+..+..|+++.++++|. +++.+..+.|.+||..+-..++.++ ....|.+..++|+..++++
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVa 241 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVA 241 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEe
Confidence 9999999999999999999999999999999966 5566677899999999988888776 5678999999999988888
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 742 VS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 742 gs-Dg~I~IwDl~s~~~~~~i~~-~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
|+ |..++.||..++ +.+.. .++|.++|.++.|+|+|...++|+.||+|+||-+..++..
T Consensus 242 Gged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCcceEEEEEeccCC---ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 88 999999999998 44544 4889999999999999999999999999999998766543
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=265.65 Aligned_cols=270 Identities=24% Similarity=0.430 Sum_probs=241.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
.|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~- 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE- 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence 467778899998 45899999999999999999999988 99999999999998778899999999999999988866
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILD 710 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwD 710 (837)
+...+.+|.+.|.++...+ .++++|+.|.+|++|++.++.++..+. +...|.++.+. +..+++|+.|+.|.+||
T Consensus 283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 5899999999999999874 477789999999999999999999999 78889999988 78999999999999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003236 711 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 711 l~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d 789 (837)
+.+++++..+.+|...|.++.+... .++++|+ |+.|++||+++.. +|+..+..|...+..+.+ .+.+|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence 9999999999999999999988765 8888998 9999999998864 688899988888865554 45689999999
Q ss_pred CeEEEEECCCCcEE-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 790 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 790 g~I~IwDl~s~~~~-~l~~-h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.|++||..+++++ .+.+ |...|+++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999988 4555 56889888876 56788999999999997
No 68
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5e-27 Score=246.21 Aligned_cols=276 Identities=20% Similarity=0.309 Sum_probs=235.8
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.....++|+++.|.+.-+|....+. .++...++.+|..+|.-+.||||.++|++++.|..+.+
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~----------------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDV----------------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCc----------------ceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34445899999999999999664431 25667889999999999999999999999999999999
Q ss_pred EeCCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec-cccceEEEEEcCCCCeEEEEE
Q 003236 582 WCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 582 Wd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~-h~~~V~sl~fspdg~~llasg 659 (837)
||+.++.+...+. +|...+.+++|.|||..+++|+.|+.|..||++... .....+ ....|.+++..+||+.+++.+
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEEe
Confidence 9999999887774 346889999999999999999999999999998643 233332 235699999999999777555
Q ss_pred eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC--EEEEEEcC-CC
Q 003236 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ--VHSVCWNT-SG 736 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~--V~sl~~sp-dg 736 (837)
.|..|++++.++...+..+..+.+|+++.++.+++++++.-.+..|.+||++..+.+..+.||... |..-||-- +.
T Consensus 374 -~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 374 -VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGND 452 (519)
T ss_pred -cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCc
Confidence 699999999999888888888899999999999999999999999999999998999999998753 34445644 55
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC
Q 003236 737 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE 799 (837)
Q Consensus 737 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s 799 (837)
.++++|+ |+.|+||+..++ +.+.++.+|...|.+++|+|..+ .+++++.||+|+||-...
T Consensus 453 ~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 8999999 999999999998 89999999999999999999764 578889999999997653
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.8e-26 Score=242.28 Aligned_cols=277 Identities=25% Similarity=0.368 Sum_probs=244.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
...|+++...+....+++|+.|..+.++|......+.++++|...|+.+.|+++...+++++.|..|+||...... ...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Ccc
Confidence 3458888888887899999999999999999999999999999999999999999999999999999999998765 466
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC---CCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~---~~i~sl~~sp~g~~llags~dg~I~iwDl 711 (837)
....|..+|+.+..+|.|++++ +++.|+++.+.|++++.++...... -.+++.+|+|||..|.+|..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7778999999999999988655 8889999999999999998887764 34899999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcC
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~d 789 (837)
.++..+..|.+|.++|..|.|+.+|.+|+++. |+.|++||++... .+.++.. ....+.++.|...|.++++++.+
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---ccceeeccccccceeEEEcCCCCeEEeecce
Confidence 99999999999999999999999999999999 7789999999874 3333332 23479999999999999999887
Q ss_pred CeEEEEECCCCc--EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 790 ETLELWNMTENK--TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 790 g~I~IwDl~s~~--~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
=.|++++-.+.. .+ .+..|.+..+++.|..+..++++++.|..++|+
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 778777755443 33 566888899999999999999999999999886
No 70
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.7e-25 Score=256.91 Aligned_cols=264 Identities=16% Similarity=0.231 Sum_probs=210.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE-------------EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRTV 621 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~-------------~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I 621 (837)
..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34556666667666676766666667765443322 23678999999999999 88999999999999
Q ss_pred EEEEcCCCC------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCC
Q 003236 622 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL 694 (837)
Q Consensus 622 ~IWDl~~~~------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g 694 (837)
+|||+.+.. .++..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+.. ...|.+++|+|++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997643 246778899999999999998777888999999999999999998888764 5679999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC-EEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCceeEEEeec-C
Q 003236 695 GRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC-T 767 (837)
Q Consensus 695 ~~llags~dg~I~iwDl~s~~~~~~l~~h~~~-V~sl~~spdg~~Lasgs-----Dg~I~IwDl~s~~~~~~i~~~~~-~ 767 (837)
..|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..|++++ |+.|++||+++... .+..... .
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~ 258 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQ 258 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCC
Confidence 99999999999999999999999999888765 45678898887776643 68999999987642 3333332 2
Q ss_pred CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEe--ccCCCCeeEEEEeCCC
Q 003236 768 GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTVN 821 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~~~~~l--~~h~~~V~sla~spdg 821 (837)
...+..+.|++++..|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.-
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 34566678999999999888 499999999999887632 3455678888888753
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-26 Score=254.91 Aligned_cols=268 Identities=22% Similarity=0.390 Sum_probs=232.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec-
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG- 638 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~- 638 (837)
-+.|+. ...||+|. ...|++|+..++........+.+.|+++.|+++|.+|++|..+|.|.|||..+.+. +..+.+
T Consensus 182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGS 258 (484)
T ss_pred Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCC
Confidence 367773 44777765 45899999999887766666689999999999999999999999999999998665 666666
Q ss_pred cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 639 h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
|...|.+++|. ..++.+|+.|+.|..+|++..+.... +. +...|..+.|++++.++++|+.|+.+.|||.....+
T Consensus 259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence 99999999999 45788999999999999998765554 33 456799999999999999999999999999988899
Q ss_pred EEEEcCCCCCEEEEEEcC-CCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CC
Q 003236 717 RLKLQGHKNQVHSVCWNT-SGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YE 790 (837)
Q Consensus 717 ~~~l~~h~~~V~sl~~sp-dg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~--dg 790 (837)
+..+..|...|..++|+| ...+||+|+ |++|++||+.++ ..+..+. .+..|.++.|++..+.|+++-. ++
T Consensus 336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 999999999999999999 456788876 999999999988 5555544 4788999999999988887655 45
Q ss_pred eEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 791 TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 791 ~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 8999999998777 7889999999999999999999999999999996
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=4.2e-26 Score=265.01 Aligned_cols=279 Identities=20% Similarity=0.296 Sum_probs=236.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCC------------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 554 STSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs--~Dg~I~VWd~~t------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
+...|.+|+.+|||..+|||+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||++||+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 445699999999999999999 899999997542 233456678999999999999999999999999
Q ss_pred eEEEEEcCC----CC-------------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-
Q 003236 620 TVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC- 681 (837)
Q Consensus 620 ~I~IWDl~~----~~-------------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~- 681 (837)
.|.||+... .. .++..+.+|...|..++|+|++. ++++++.|++|.+||..+.+++.++..
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeecc
Confidence 999999872 00 24678889999999999999855 888999999999999999999988875
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC------CCEEEEEEcCCCCEEEEEe--CC---eEEEE
Q 003236 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSVCWNTSGEYLASVS--DE---LVRVW 750 (837)
Q Consensus 682 ~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~------~~V~sl~~spdg~~Lasgs--Dg---~I~Iw 750 (837)
.+.|..+.|.|-|++|++-+.|++|+||++.+....+.+.++- ..+..+.|+|||.+|++.. .+ ++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 5679999999999999999999999999988877777766542 3578899999999999976 33 78888
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCC-----CC------------EEEEEEcCCeEEEEECCCCcEEE--eccCCCC
Q 003236 751 SIGSGSKGECIHELSCTGNKFHSCVFHPT-----FP------------SLLVIGCYETLELWNMTENKTLT--LSAHDKL 811 (837)
Q Consensus 751 Dl~s~~~~~~i~~~~~~~~~I~sv~fspd-----g~------------~L~sgs~dg~I~IwDl~s~~~~~--l~~h~~~ 811 (837)
+-.+. +.-..+.+|..++.++.|+|. .. .+++|+.|++|.||.....+++. ..-....
T Consensus 251 eR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 251 ERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred ecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 87655 667788899999999999873 11 57788999999999987777662 2334678
Q ss_pred eeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 812 VSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 812 V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
|.+++|+|||..|+.||.||+|.+.
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEE
Confidence 9999999999999999999999875
No 73
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=262.31 Aligned_cols=247 Identities=19% Similarity=0.333 Sum_probs=203.3
Q ss_pred eEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--------------------------------C-----
Q 003236 588 TVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------P----- 629 (837)
Q Consensus 588 ~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~--------------------------------~----- 629 (837)
.....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. .
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3344555 8999999999999999999999999999998764 0
Q ss_pred ----------------------CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeE
Q 003236 630 ----------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQ 687 (837)
Q Consensus 630 ----------------------~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~s 687 (837)
..++..+.||.+.|.+|.|+.+ .+|++++.|.+|++|++...+|+.+|.|..-|+|
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 0234567789999999999976 3677999999999999999999999999999999
Q ss_pred EEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-
Q 003236 688 MRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL- 764 (837)
Q Consensus 688 l~~sp-~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~- 764 (837)
++|+| |.++|++|+-|+.|+||++...+.+.-.. -..-|+++||.|||++.++|+ +|.+++|+..........+..
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 99999 67899999999999999999877665544 448899999999999999999 999999999876321111111
Q ss_pred ----ecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCcEE-EeccCC--CCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 765 ----SCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHD--KLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 765 ----~~~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s~~~~-~l~~h~--~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+.....|+.+.|.|... .|++.+.|..|+|||.++..++ .+.++. ..-....|+.||++|+++++|..|+||
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 11133799999987654 5999999999999999888776 555443 233456788999999999999999999
Q ss_pred C
Q 003236 837 K 837 (837)
Q Consensus 837 d 837 (837)
+
T Consensus 574 ~ 574 (712)
T KOG0283|consen 574 K 574 (712)
T ss_pred e
Confidence 6
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.8e-26 Score=230.23 Aligned_cols=270 Identities=17% Similarity=0.301 Sum_probs=223.4
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCC-CeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 553 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 553 ~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t-~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
.-.+.|.+|+||| ...+|+.|+.|++|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4456799999999 556777999999999999986 3333 445679999999999999999999999999999999987
Q ss_pred CceeEEeeccccceEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~-~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
. +..+..|.++|.++.|-+... .+|++|+.|++|++||.+....+.++..+..++++..-. ..++++..+..|.+
T Consensus 105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY--PMAVVATAERHIAV 180 (347)
T ss_pred C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC--ceeEEEecCCcEEE
Confidence 5 678888999999999986533 478899999999999999999999999999988887654 46888889999999
Q ss_pred EECCCCeEEE-EEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC---------CceEEEEE
Q 003236 709 LDVETQVCRL-KLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSCVF 776 (837)
Q Consensus 709 wDl~s~~~~~-~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---------~~I~sv~f 776 (837)
|+++.+.... ... .-.-.++||+...|....+.|+ +|.+.|..+..+.. ..-..|++|. ..|.+++|
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEe
Confidence 9998763322 211 1334688999999888888899 99999999987643 3334455554 24788999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003236 777 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 777 spdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg 827 (837)
+|....|+++|+||++.+||-.....+ ....|..+|++++|+.+|.++|-+
T Consensus 260 hP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 260 HPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 999999999999999999998776655 567899999999999999988755
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=228.94 Aligned_cols=294 Identities=18% Similarity=0.283 Sum_probs=236.9
Q ss_pred EEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 003236 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (837)
Q Consensus 509 v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~ 588 (837)
+.+|+....+.-|......+. .......++..+..+.+|.++|+|++.+ +.++|+|+.|-+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~-------~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKG-------CTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCccc-------cccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence 355777666666643322211 1122345667788889999999999996 8899999999999999999999
Q ss_pred EEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 589 ~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
.+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|++..- ..+..+.+|.+.|+.++++|.++ +.++.+.|+.++
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr 152 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR 152 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence 9999999999999999999755 8999999999999999975 56899999999999999999976 666888899999
Q ss_pred EEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCe
Q 003236 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 746 (837)
Q Consensus 667 vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~ 746 (837)
.||+-+|+...........+.+.|+|.|.+++++.. +.|-||.+++......+. ....+.|+.|...+.+++.+.|+.
T Consensus 153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~ 230 (362)
T KOG0294|consen 153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEW 230 (362)
T ss_pred eehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCce
Confidence 999999998888888777888999999998887765 568899988776555544 335688888875544444444889
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEE--eCCCCEEEEEEcCCeEEEEECCCC-----cEEEeccCCCCeeEEEEe
Q 003236 747 VRVWSIGSGSKGECIHELSCTGNKFHSCVF--HPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS 818 (837)
Q Consensus 747 I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f--spdg~~L~sgs~dg~I~IwDl~s~-----~~~~l~~h~~~V~sla~s 818 (837)
|++||..+. .+...+..|...|-++.+ .|++.+|+++++||.|+|||++.. +.+........++|+...
T Consensus 231 i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 231 ISLKDTDSD---TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK 306 (362)
T ss_pred EEEeccCCC---ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence 999999885 788999999999999884 567889999999999999999766 333444446677777653
No 76
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.8e-26 Score=255.43 Aligned_cols=272 Identities=20% Similarity=0.364 Sum_probs=230.1
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+...++.++-..+.|.+|+..=. ..+..|.+|.++|..|+|+|++.++++|+.|.+|+|
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEEE
Confidence 3445578888889999999955322 235567899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
|+.++.+++.++.+|-+.|..+.|++.-.+|+++|.|-+|+||+..+.+ ++..+.||...|+|..|+|..+ ++++++-
T Consensus 78 WnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptED-lIVSaSL 155 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTED-LIVSASL 155 (1202)
T ss_pred EecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccc-eEEEecc
Confidence 9999999999999999999999999999999999999999999999866 5999999999999999999855 7889999
Q ss_pred CCcEEEEECCCCe---------------------------eee--EEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 662 NSEIRYWSINNGS---------------------------CAG--VFK-CQSGATQMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 662 Dg~I~vwDl~t~~---------------------------~i~--~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl 711 (837)
|-+|+|||+..-+ ++. .+. +..+|+-++|+|.-..|++|+.|..|++|.+
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence 9999999985311 111 111 2456899999999999999999999999998
Q ss_pred CCCe--EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 712 ETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 712 ~s~~--~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
...+ .+.+..+|.+.|.++-|+|..++|++.+ |+.|+|||+... ..+.++......++.++.+|..+.+++| .
T Consensus 236 netKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lNLfAAg-H 311 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELNLFAAG-H 311 (1202)
T ss_pred ccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcceeeee-c
Confidence 7543 4567789999999999999999999988 999999999877 7888888888999999999998855544 4
Q ss_pred CCeEEEEECC
Q 003236 789 YETLELWNMT 798 (837)
Q Consensus 789 dg~I~IwDl~ 798 (837)
|+-+.+|.++
T Consensus 312 DsGm~VFkle 321 (1202)
T KOG0292|consen 312 DSGMIVFKLE 321 (1202)
T ss_pred CCceEEEEEc
Confidence 4444455443
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=6e-27 Score=238.44 Aligned_cols=278 Identities=19% Similarity=0.327 Sum_probs=237.0
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+...++++||.|+-+++|....+.... ...+..-..+--|.++|.|++||.|...||+|+.||.|+|
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrK-----------DLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRK-----------DLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhh-----------hhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 34455899999999999999766553221 1122222334568899999999999999999999999999
Q ss_pred EeCCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 582 WCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 582 Wd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
|.+.+|.+++.+. .|+..|+|+.|+.|+..+++++.|.+++|.-+..++. ++.+.+|...|+...|.++|..++ +++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-saS 367 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-SAS 367 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-Eec
Confidence 9999999999996 8999999999999999999999999999999998774 899999999999999999988655 899
Q ss_pred CCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEEEEEEc
Q 003236 661 NNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWN 733 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~~~~l~~---h~~~V~sl~~s 733 (837)
.||+|++|+.++.+|+.+|+. ...|.++...|.. ..++++...++|+|.++. |..++.+.. ..+...+.+.+
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 999999999999999999886 3457788777754 568888888999999986 556666643 34567788899
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
|.|.++++.+ |+.++.|.+.++ ..-+++..|...+..++-+|..+.|++-+.||.+++|.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999988 999999999998 67778888999999999999999999999999999994
No 78
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.7e-26 Score=231.52 Aligned_cols=289 Identities=19% Similarity=0.313 Sum_probs=246.6
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
.+..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++++.++.+|.+.|++|+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45667888999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EEcC------C---------------------------------CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 624 WDTE------N---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 624 WDl~------~---------------------------------~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
|... . -..++..+.+|...|.+..|...+.. +++++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q-~vTaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQ-MVTASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcce-eeeeecccc
Confidence 9621 0 01245678899999999999987765 459999999
Q ss_pred EEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
-.+||+++++.+..+.. ....+.++-+|..+.+++.+.|.++++||++.. ..+..|.+|...|+++.|..+.+ +++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence 99999999999998875 556888899999999999999999999999865 56788999999999999987665 5566
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-----eccCCCCeeEEE
Q 003236 743 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-----LSAHDKLVSSLA 816 (837)
Q Consensus 743 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-----l~~h~~~V~sla 816 (837)
+ |.+|+|||+++.. ..+.++. ...++..++++..++.|+.--.+..|++||+...++.+ ..+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 6 8899999999864 3444444 36778999999999888888888899999999887663 348999999999
Q ss_pred EeCCC--CEEEEEECCCcEEEeC
Q 003236 817 ASTVN--GMVASASHDKCVKIWK 837 (837)
Q Consensus 817 ~spdg--~~LaSgs~DG~I~IWd 837 (837)
|..+- .-|++|+-|..+.-|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 98654 3578999999988885
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.2e-26 Score=242.15 Aligned_cols=240 Identities=19% Similarity=0.261 Sum_probs=211.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
.-.+.|++++|-.||++||+|+..|.|+|||+++...+..+.+|..+|..+.|+| ++..|++|+.|+.+++||+.+...
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 3445699999999999999999999999999877667788899999999999999 466788899999999999998664
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwD 710 (837)
...+.+|++.|.|.+|+|..+.++++|+.||.|++||++.. ..+..+.+..+|..+.+-|.|..|++++ .+.|++||
T Consensus 146 -~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWD 223 (487)
T KOG0310|consen 146 -QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWD 223 (487)
T ss_pred -EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEE
Confidence 77899999999999999999999999999999999999987 7888999999999999999987776655 57899999
Q ss_pred CCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 711 VETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 711 l~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
+-+| +.+.....|...|+|+++..++..|++++ |+.|+|||+.+. +.++.+. -.++|.+++.+|++..+++|..
T Consensus 224 l~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred ecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEEecc
Confidence 9965 55556666999999999999999999999 999999997665 6666655 3678999999999999999999
Q ss_pred CCeEEEEECC
Q 003236 789 YETLELWNMT 798 (837)
Q Consensus 789 dg~I~IwDl~ 798 (837)
+|.+.+-+..
T Consensus 300 nGlv~~rr~~ 309 (487)
T KOG0310|consen 300 NGLVSIRRRE 309 (487)
T ss_pred cceeeeehhh
Confidence 9988776543
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.8e-24 Score=208.12 Aligned_cols=290 Identities=19% Similarity=0.257 Sum_probs=238.2
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC------C---------eEEEEeccCCCCeEEEEEcC
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------F---------TVKSTLEEHTQWITDVRFSP 607 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------~---------~~~~~l~~h~~~I~~l~fsp 607 (837)
..|..+..+. .+..|.+++|+|.|.+.|+|+..++++|.-... + -..+.-+.|.+.|+|++|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3455565554 456699999999999999999999998874321 1 11133457999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCc----eeEEeeccccceEEEEEcCC---CCeEEEEEe-CCCcEEEEECCCCeeeeEE
Q 003236 608 SLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVF 679 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~----~~~~~~~h~~~V~sl~fspd---g~~llasgs-~Dg~I~vwDl~t~~~i~~~ 679 (837)
+|.+|++|+.|++|++.-++.... .-..+.-|.+.|..++|..+ +..++++++ .|..|++-|...|.....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999999999987664322 22567779999999999753 455666654 5778888899999988888
Q ss_pred ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--C-----CCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003236 680 KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--H-----KNQVHSVCWNTSGEYLASVS-DELVRVWS 751 (837)
Q Consensus 680 ~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~--h-----~~~V~sl~~spdg~~Lasgs-Dg~I~IwD 751 (837)
..+.+-.-..++-++-.+++|+.|.+|++||++-..++.++.. | .+.|.+++..|.|++|++|. |....+||
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 7655544444566678899999999999999999988887653 2 35799999999999999999 99999999
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-----EEEeccCCCCeeEEEEeCCCCEEEE
Q 003236 752 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-----TLTLSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 752 l~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~-----~~~l~~h~~~V~sla~spdg~~LaS 826 (837)
++.+ ..+..+..|...|.++.|+|...++++++.|..|++-|+...- .+....|...+..+.|+|..-.+++
T Consensus 260 irg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 260 IRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 9998 7899999999999999999999999999999999999986532 3366789999999999999999999
Q ss_pred EECCCcEEEe
Q 003236 827 ASHDKCVKIW 836 (837)
Q Consensus 827 gs~DG~I~IW 836 (837)
.+.|.++.+|
T Consensus 337 ssadkt~tlw 346 (350)
T KOG0641|consen 337 SSADKTATLW 346 (350)
T ss_pred ccCcceEEEe
Confidence 9999999999
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=256.09 Aligned_cols=266 Identities=23% Similarity=0.416 Sum_probs=232.6
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEE-ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~-l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
++.++.+|+.|.++++|..... ..+.+ +.+|.+.|.+++|..-+.+|++|+.|.+++|||
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~-------------------~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNG-------------------YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred ecCeEEecCCCceeEEeecccc-------------------eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 3678899999999988844332 33455 899999999999998788999999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
+.++.+..++.+|.+.|.++...+ .++++|+.|.+|++|++.++. .+..+.+|...|.++.++ ..++++|+.|+
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~ 351 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLVSGSYDG 351 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEEEEecCc
Confidence 999999999999999999998864 478889999999999999766 488888899999999998 44788999999
Q ss_pred cEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
+|++||+.+++++..+.. ...|.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-|.++.+ .+++|++
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs 428 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVS 428 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEe
Confidence 999999999999999986 456888877765 89999999999999999999 999999999998876655 5788998
Q ss_pred Ee-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 742 VS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 742 gs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
++ |++|++||..++ .++..+.+ +...|..+++. ...+++++.++.+++||++++...
T Consensus 429 ~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ccccccEEEeecccC---ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 88 999999999988 78888887 56778877776 467999999999999999999877
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.6e-26 Score=254.40 Aligned_cols=275 Identities=23% Similarity=0.417 Sum_probs=235.4
Q ss_pred EEEEc-CCCCEEEEEECCCcEEEEeCCCCe------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-c
Q 003236 560 SCHFS-PDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y 631 (837)
Q Consensus 560 sl~fS-pdg~~Lasgs~Dg~I~VWd~~t~~------~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~ 631 (837)
.+..+ |.++||++||+||.|++|+..... .+..++.|.++|++++...+++.|+++|.|-+|++|+..... .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 34444 367789999999999999875322 367788999999999999999999999999999999998764 6
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeeEEe----------cCCCeeEEEEecCCCEEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK----------CQSGATQMRFQPRLGRILA 699 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~~~~----------~~~~i~sl~~sp~g~~lla 699 (837)
+..++..|...|.|+++-.....++++|+-|+.|.+||++++. .+..+. ....|++++..+.+..|+.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 7888999999999999954456799999999999999999873 232222 2346899999999988999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 700 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
|+.++.|++||.++.+.+..+.+|...|.++..++||..+++++ ||+|++||+.-. .|+.++..|...++++..+|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCC
Confidence 99999999999999999999999999999999999999999988 999999999877 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 779 TFPSLLVIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~-~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..++++|+.|+.|+.-|+.+. +...+...+.+|..+..+.+..-+-+++.|+.|+-|.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999999999984 4445556677888888776555556777888898884
No 83
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=223.95 Aligned_cols=241 Identities=24% Similarity=0.362 Sum_probs=216.3
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003236 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (837)
Q Consensus 591 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD 669 (837)
+.+.+|...|.+|+|+.+|..|++|+.|+++.+|+++..... -....+|.+.|-.++|+|....+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456689999999999999999999999999999999875432 2456789999999999999999999999999999999
Q ss_pred CCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEE
Q 003236 670 INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR 748 (837)
Q Consensus 670 l~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~ 748 (837)
++.++++..+....+-..+.|+|+|++++++..|..|.++|.++.+.+.... ....+..++|+.++.+++... .|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9999999999988888899999999999999999999999999988776655 556788899998777776666 79999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003236 749 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 749 IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg 827 (837)
|...... +.+..+..|.....++.|+|+|++|++|+.|..+.+||+...-++ .+..++-+|..|.|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9998765 788999999999999999999999999999999999999988777 677899999999999999999999
Q ss_pred ECCCcEEE
Q 003236 828 SHDKCVKI 835 (837)
Q Consensus 828 s~DG~I~I 835 (837)
++|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99988765
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=3.1e-26 Score=240.84 Aligned_cols=266 Identities=21% Similarity=0.350 Sum_probs=227.6
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
....+++|+.|..|++|..... ....+.++.+..+.|+++.|.++++++++++.|+.+++|++
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~-----------------k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGE-----------------KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred Ccchhhhcchhhhhhhhhcccc-----------------hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 3356789999999999955433 13346778888999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
...+...++.+|.+.|+++.|......+++|+.|.+|++||+.... +.+++. ....+..|+.. ...+++|-.|+.
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l-~~S~cnDI~~~---~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL-PGSQCNDIVCS---ISDVISGHFDKK 323 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eecccc-ccccccceEec---ceeeeecccccc
Confidence 9999999999999999999999877779999999999999999744 344433 23456666665 346779999999
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEcCCCCEEE
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~----h~~~V~sl~~spdg~~La 740 (837)
|++||+++..+.......+.|+++..++++..+++++.|..+.++|+++......+.. .....+.++|||++.|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred eEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 9999999999999999999999999999999999999999999999999887777653 223588899999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~--~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
+|+ ||.|+||++.++ ++...+..... .|++++|+|.|..+++++.++.+.+|
T Consensus 404 AGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999 999999999998 55555544443 59999999999999999999999998
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.7e-25 Score=257.22 Aligned_cols=288 Identities=20% Similarity=0.296 Sum_probs=232.1
Q ss_pred ccCCCeEEccc--CCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003236 503 TDMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (837)
Q Consensus 503 ~~~~~~v~~Gs--~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (837)
.+....+++|+ .|+.+++|....-.+ +.... .-..-..+.+...|.+.|+|+.|++||++||+|++|+.|.
T Consensus 22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl~--~~~~~-----~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~ 94 (942)
T KOG0973|consen 22 HPDGVKFATGGQVLDGGIVIWSQDPVLD--EKEEK-----NENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM 94 (942)
T ss_pred cCCceeEecCCccccccceeeccccccc--hhhhh-----hcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence 34445678888 999999994322110 00000 0012235677889999999999999999999999999999
Q ss_pred EEeCC------------------CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccc
Q 003236 581 LWCTE------------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (837)
Q Consensus 581 VWd~~------------------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~ 642 (837)
||... ..+.+..+.+|...|.+++|+|++.+|++++.|++|.|||..+. ..+..+.+|.+.
T Consensus 95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~ 173 (942)
T KOG0973|consen 95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSL 173 (942)
T ss_pred EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeeccccc
Confidence 99765 23567888999999999999999999999999999999999997 568999999999
Q ss_pred eEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-------CCCeeEEEEecCCCEEEEEEc----CCeEEEEEC
Q 003236 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILAAAI----ENYISILDV 711 (837)
Q Consensus 643 V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~~~i~sl~~sp~g~~llags~----dg~I~iwDl 711 (837)
|..+.|+|-|. +||+-+.|++|+||++.+..+.+.+.. ...+..+.|+|||.+|++... ...+.|++-
T Consensus 174 VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 174 VKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred ccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 99999999987 677999999999999887766666653 234778999999999998764 247899999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCC------C-------C----EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTS------G-------E----YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spd------g-------~----~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
.+.+.-..+-+|..++.++.|+|. . . .+|+|+ |++|.||..........+ .......|.+
T Consensus 253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~SI~D 330 (942)
T KOG0973|consen 253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--HNLFNKSIVD 330 (942)
T ss_pred CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh--hhhhcCceee
Confidence 999999999999999999999981 1 1 566677 999999998665332222 2334678999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 774 CVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
++|+|||..|++++.||+|.++.++..+
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 9999999999999999999999987643
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-23 Score=205.44 Aligned_cols=295 Identities=18% Similarity=0.264 Sum_probs=237.3
Q ss_pred ccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003236 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (837)
Q Consensus 496 ~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~ 575 (837)
++....+.+...+.++|+...+.++...++-.+.+.. .+..+..+......-+.|.+.|+|.+|+|+|.+||+|+.
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 4445566777789999999999998865554433221 122233333445556789999999999999999999999
Q ss_pred CCcEEEEeCCCCeE-----EEEeccCCCCeEEEEEcCC----CCEEEEEe-CCCeEEEEEcCCCCceeEEeeccccceEE
Q 003236 576 DKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPS----LSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (837)
Q Consensus 576 Dg~I~VWd~~t~~~-----~~~l~~h~~~I~~l~fspd----g~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s 645 (837)
|++|++.-.....+ ...+.-|.+.|.+++|..+ +.+|++++ .|..|++-|...+. .+..+.+|++.|.+
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtghila 188 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGHILA 188 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCcccEEE
Confidence 99999875443222 2456679999999999764 45667655 37778888887765 48899999999988
Q ss_pred EE-EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 646 LD-FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 646 l~-fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
+- |+ ..++++|+.|.+|++||++-..++.++.. .+.|..+++.|.|+.+++|-.|....+||++.+..
T Consensus 189 lyswn---~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 189 LYSWN---GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEEec---CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 74 44 56899999999999999999999887763 24588999999999999999999999999999999
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 717 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 717 ~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
+..+..|...|.|+.|+|...|+++|+ |..|++-|+...-. .-.+.....|...+..|.|+|..-.+++.+.|.++.+
T Consensus 266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl 345 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL 345 (350)
T ss_pred eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence 999999999999999999999999999 99999999875321 1345556678899999999999988999999999999
Q ss_pred EECC
Q 003236 795 WNMT 798 (837)
Q Consensus 795 wDl~ 798 (837)
|-+.
T Consensus 346 wa~~ 349 (350)
T KOG0641|consen 346 WALN 349 (350)
T ss_pred eccC
Confidence 9764
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2e-25 Score=221.80 Aligned_cols=251 Identities=20% Similarity=0.307 Sum_probs=209.1
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCC-CCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCC
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADR 619 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg 619 (837)
..+.+...+.. .+.+..|+|+++. ..+++++.||+++|||+. ...++..++.|...|.++.|++ ++..++++|.|+
T Consensus 49 ~gi~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~ 127 (311)
T KOG0277|consen 49 KGIQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDG 127 (311)
T ss_pred CCeEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCC
Confidence 33445555543 4459999999954 478889999999999965 3567889999999999999998 466788899999
Q ss_pred eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecC-CCEE
Q 003236 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPR-LGRI 697 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~sl~~sp~-g~~l 697 (837)
+|++|+...+. .+.++.+|...|....|+|....++++++.|+.+++||++. |+......+...+.|+.|+.- .+.+
T Consensus 128 TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 128 TIKLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred ceEeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 99999998765 48899999999999999999999999999999999999986 444443334558999999874 4567
Q ss_pred EEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 698 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 698 lags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
++++.|+.|++||++.- .++.++.+|.-.|+.|.|+|.. .+|++++ |-+++|||..... .++.+...|..-+..+
T Consensus 207 ~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~ 284 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGL 284 (311)
T ss_pred EecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEecc
Confidence 78889999999999975 6788999999999999999964 6788888 9999999997553 4566667788888888
Q ss_pred EEeC-CCCEEEEEEcCCeEEEEEC
Q 003236 775 VFHP-TFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 775 ~fsp-dg~~L~sgs~dg~I~IwDl 797 (837)
.|++ +...++.++.|+.++||+.
T Consensus 285 Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 285 DWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccccCceeeecccccceeeecc
Confidence 8887 4567899999999999984
No 88
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=9.1e-24 Score=242.73 Aligned_cols=245 Identities=18% Similarity=0.268 Sum_probs=190.8
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCC-------eEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCC
Q 003236 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR 619 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg 619 (837)
..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+. ..+..+.+|...|.+|+|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999764 3567788999999999999975 6999999999
Q ss_pred eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEE
Q 003236 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRI 697 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~l 697 (837)
+|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+.. +..+.|.++++.+
T Consensus 149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999865 4677888999999999999976 677999999999999999998887765433 4567889988888
Q ss_pred EEEE----cCCeEEEEECCCCe-EEEEEcC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-CC
Q 003236 698 LAAA----IENYISILDVETQV-CRLKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-TG 768 (837)
Q Consensus 698 lags----~dg~I~iwDl~s~~-~~~~l~~-h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-~~ 768 (837)
++++ .|+.|++||+++.. ++..+.. +...+....|++++.+|++++ |+.|++||+.++. .+..... +.
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence 8765 36899999998753 3433332 334566678999999888775 8999999999873 3333322 34
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 769 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 769 ~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
..+..++|.|... +-...-...++|.+...
T Consensus 304 ~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 304 EPHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence 5677888888632 21222224455555443
No 89
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=6.7e-25 Score=242.32 Aligned_cols=302 Identities=15% Similarity=0.203 Sum_probs=240.2
Q ss_pred cccccCCCeeeeEEEEecCCCCCeEEEEEcCC-----------CCEEEEEECCCcEEEEeCCCCe---EEE---------
Q 003236 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATGGHDKKAVLWCTESFT---VKS--------- 591 (837)
Q Consensus 535 ~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd-----------g~~Lasgs~Dg~I~VWd~~t~~---~~~--------- 591 (837)
.+|++.+.........+--|...|+.|.--|- ...++|++.|++|++||++.+. ..+
T Consensus 349 YvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ 428 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLS 428 (1080)
T ss_pred EEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhh
Confidence 55777777777777777788888888876551 2358999999999999987521 110
Q ss_pred -Ee------------------------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 592 -TL------------------------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 592 -~l------------------------~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
.. -.....|.+++.+|++.+||+|..-|+|+||++.+-+. ......|...|.|+
T Consensus 429 ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-~~~~eAHesEilcL 507 (1080)
T KOG1408|consen 429 KIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-TCFMEAHESEILCL 507 (1080)
T ss_pred cCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-hhheecccceeEEE
Confidence 00 02334689999999999999999999999999987664 67778899999999
Q ss_pred EEcCC--CCeEEEEEeCCCcEEEEECCC-CeeeeEEec-CCCeeEEEEecCC--CEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 647 DFHPS--KEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 647 ~fspd--g~~llasgs~Dg~I~vwDl~t-~~~i~~~~~-~~~i~sl~~sp~g--~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
.|+.. +..+|++++.|..|.|||+.. ...+.++.. ...|+++.|...| ...++++.|..|.+--..+......+
T Consensus 508 eyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f 587 (1080)
T KOG1408|consen 508 EYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF 587 (1080)
T ss_pred eecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec
Confidence 99843 456899999999999999964 455556654 5679999998877 56788888887765433322112222
Q ss_pred cC-----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 721 QG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 721 ~~-----h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
.. ....++.++..|..++++++. |..|+|||+.+++..+.++--..|.+....+...|.|.||++.+.|.+|.+
T Consensus 588 ~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~ 667 (1080)
T KOG1408|consen 588 PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCF 667 (1080)
T ss_pred cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEE
Confidence 22 234688999999999999998 999999999999544444444456788899999999999999999999999
Q ss_pred EECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 795 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 795 wDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
||..+++++ ...+|...|+.+.|.+|.+.|++++.||.|.||+
T Consensus 668 ~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 668 VDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred EEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 999999999 7889999999999999999999999999999995
No 90
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.3e-24 Score=220.15 Aligned_cols=268 Identities=19% Similarity=0.266 Sum_probs=221.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
.+.|++|.|+|.+..|++++.||.+++||+........+ .|..++.+++|.+ ...+++|+.||.|+++|+.++. ..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--ED 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--ce
Confidence 567999999999889999999999999999987666666 4899999999987 4679999999999999999876 46
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~ 714 (837)
.+..|...|.||.+++..+ .+++|+.|++|++||.+.......+.....|.++... ++.|++|+.+..|.+||+++.
T Consensus 89 ~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 6778999999999998755 5669999999999999987777777777778877665 578999999999999999987
Q ss_pred eEEEEEc--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-CceeEEEeecCC---------CceEEEEEeCCCC
Q 003236 715 VCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCTG---------NKFHSCVFHPTFP 781 (837)
Q Consensus 715 ~~~~~l~--~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~-~~~~i~~~~~~~---------~~I~sv~fspdg~ 781 (837)
....... ..+..++||++.|++.-+++++ ||.|.+=.++... .......|++|. .+|++++|+|-..
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 5544222 2445789999999888788888 9988887766541 112233455543 4689999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 782 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
.|++|++||.|.+||+.+.+.+ .+...+..|.+++|+.+|..||+|+.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999999999998877 55566778999999999999999874
No 91
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=2.4e-23 Score=224.54 Aligned_cols=264 Identities=13% Similarity=0.107 Sum_probs=208.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeeccccceEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s 645 (837)
+.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++. ...+..+. .+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence 3578899999999999999999888887654 47789999999876 5667889999999987654 44444433 3567
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCC
Q 003236 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 646 l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg-~I~iwDl~s~~~~~~l~~h~ 724 (837)
++|+|+++.++++++.++.|++||+.+.+.+..+.....+.+++|+|++..++++..++ .+.+||.++++....+. ..
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence 89999998787777778999999999988888877666678999999999999888765 57788999887765544 23
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 003236 725 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLEL 794 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~sv~fspdg~~L~sg-s~dg~I~I 794 (837)
..+.+++|++++.+|++++ ++.|++||+.++ +++..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 4567899999999886554 889999999987 343333221 1123568899999986665 45668999
Q ss_pred EECCCCcEEEeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 003236 795 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 837 (837)
Q Consensus 795 wDl~s~~~~~l~~h~~~V~sla~spdg~~LaSg-s~DG~I~IWd 837 (837)
||+.+++......+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999998887554556689999999999999886 4689999997
No 92
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=219.95 Aligned_cols=285 Identities=19% Similarity=0.265 Sum_probs=214.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE--EEe--ccCCCCeEEEEEcCCCCEEEE-EeCCCeEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL--EEHTQWITDVRFSPSLSRLAT-SSADRTVR 622 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l--~~h~~~I~~l~fspdg~~Lat-gs~Dg~I~ 622 (837)
+.+|++|.+.|+|++|+.||++||+++.|++|+||+++..... +.+ ...-+..+.++|.||-+-+++ +-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4568899999999999999999999999999999998864321 111 112235688999999765554 44566899
Q ss_pred EEEcCCCC---cee--------EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEE
Q 003236 623 VWDTENPD---YSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 690 (837)
Q Consensus 623 IWDl~~~~---~~~--------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~ 690 (837)
+|.+...+ ... .....|.-.|..+-... +..++++++.|..|.+|+++ |..+..+.. ...-+..+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99875322 111 12233555566655554 45578899999999999999 888877765 344667889
Q ss_pred ecCCCEEEEEEcCCeEEEEECC---CC-----eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC----C
Q 003236 691 QPRLGRILAAAIENYISILDVE---TQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS----K 757 (837)
Q Consensus 691 sp~g~~llags~dg~I~iwDl~---s~-----~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~----~ 757 (837)
+|+|+++++++..-.|++|++- .| ..+..+++|.+.|+.++|+++...+++.+ ||+++|||++-.. .
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 34677899999999999999999999999 9999999986321 1
Q ss_pred ceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003236 758 GECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 758 ~~~i~~~----~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG 831 (837)
.+.+.+. ...+..-..+.++|+|..|+++ ....|.+|..++++.. ....|...|++|+|+++|++++||++ .
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD-R 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc-e
Confidence 1222222 2233444589999999966554 4457999999998877 34589999999999999999999974 5
Q ss_pred cEEEe
Q 003236 832 CVKIW 836 (837)
Q Consensus 832 ~I~IW 836 (837)
.+++.
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 56654
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.7e-24 Score=230.89 Aligned_cols=295 Identities=21% Similarity=0.288 Sum_probs=232.6
Q ss_pred cccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCcccccc-ccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003236 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA-EVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATG 573 (837)
Q Consensus 495 ~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~-~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasg 573 (837)
+.+....+.+.+.++.+++.|++|--|....+.+.+....+.- ....+..+.+-. ++|...|.+++.|+||+|||+|
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEec
Confidence 3444445566678889999999999997766554333222210 001233333322 4999999999999999999999
Q ss_pred ECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 574 s~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
+.|..|.||+..+.+.+..+.+|.+.|.+++|......|++++.|.+|++|+++...+ +.++.+|.+.|..|..... .
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~r-e 298 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALSR-E 298 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhcc-c
Confidence 9999999999999999999999999999999998888999999999999999997664 7889999999999998866 4
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC-C---------
Q 003236 654 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-H--------- 723 (837)
Q Consensus 654 ~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~-h--------- 723 (837)
.++..|+.|+++++|++.....+....+.+.+.|++|..+ .++++|+.+|.|.+|++-+.+++++... |
T Consensus 299 R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~ 377 (479)
T KOG0299|consen 299 RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPV 377 (479)
T ss_pred ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcccc
Confidence 4777788999999999965544444445567899999876 7899999999999999999888876542 2
Q ss_pred --CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE
Q 003236 724 --KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW 795 (837)
Q Consensus 724 --~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~Iw 795 (837)
..+|++++..|...++++|+ +|+|++|-+..+-. ...+..+. ..+.|++++|+++|+.|++|..- ..+--|
T Consensus 378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 23899999999999999999 99999999988732 23444444 56789999999999977777543 344333
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=4.7e-25 Score=224.05 Aligned_cols=292 Identities=13% Similarity=0.216 Sum_probs=231.5
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.....++++|+.|.+|+++....-... .....+...........+++|..|.++|+++.|+|....|++|+.|++|++
T Consensus 120 fs~DG~lvATGsaD~SIKildvermlak-s~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl 198 (430)
T KOG0640|consen 120 FSPDGSLVATGSADASIKILDVERMLAK-SKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL 198 (430)
T ss_pred eCCCCcEEEccCCcceEEEeehhhhhhh-cchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence 3444579999999999999965421111 111111222222233468899999999999999999999999999999999
Q ss_pred EeCCCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE--EeeccccceEEEEEcCCCCeEEE
Q 003236 582 WCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR--TFTGHSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 582 Wd~~t~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~--~~~~h~~~V~sl~fspdg~~lla 657 (837)
||.......+.++ ....+|.++.|+|.|.+|++|..-.++++||+++-.+-+. .-..|.+.|+++.+++.+. +.+
T Consensus 199 FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYv 277 (430)
T KOG0640|consen 199 FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYV 277 (430)
T ss_pred EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEE
Confidence 9987644332222 3456899999999999999999999999999998654322 2346899999999999976 667
Q ss_pred EEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC--C---CEEE
Q 003236 658 SCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--N---QVHS 729 (837)
Q Consensus 658 sgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~--~---~V~s 729 (837)
+++.||.|++||--+++|+.++.. ...|.+..|..+++++++.+.|..|++|++.+++++..+.+.. + .-+.
T Consensus 278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtq 357 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQ 357 (430)
T ss_pred EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhh
Confidence 999999999999999999998864 4569999999999999999999999999999999999887631 1 2234
Q ss_pred EEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 730 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 730 l~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
..|+....|++.-. .+.+.-||.++... ....-.+|.+.+..+.-+|.+.-+++++.|..+++|--
T Consensus 358 AvFNhtEdyVl~pDEas~slcsWdaRtadr--~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 358 AVFNHTEDYVLFPDEASNSLCSWDARTADR--VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhcCccceEEccccccCceeeccccchhh--hhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 56777788888776 66899999998743 22233478999999999999999999999999999954
No 95
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=6.5e-23 Score=231.44 Aligned_cols=290 Identities=16% Similarity=0.281 Sum_probs=233.3
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVW 624 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~-Latgs~Dg~I~IW 624 (837)
+.+.++.++.+.|+++.=+|-=..+|.|..+|+|.|++++.++.+.+++...+.|+.+.|..||.. +++|+..|.+.+|
T Consensus 193 K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w 272 (910)
T KOG1539|consen 193 KVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW 272 (910)
T ss_pred cEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence 457888999999999999998889999999999999999999999999855699999999999876 5566667999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-------------------------------
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG------------------------------- 673 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~------------------------------- 673 (837)
|++..+........|.+.|..+.|.+... ++++++.|+.+++|=..++
T Consensus 273 DLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 273 DLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred EcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence 99976654444556666666666665533 4555555655554422210
Q ss_pred --------------------------------------------------------------------------------
Q 003236 674 -------------------------------------------------------------------------------- 673 (837)
Q Consensus 674 -------------------------------------------------------------------------------- 673 (837)
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence
Q ss_pred -ee-eeEEecC------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEcCCCCEEEEE
Q 003236 674 -SC-AGVFKCQ------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 674 -~~-i~~~~~~------~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l---~~h~~~V~sl~~spdg~~Lasg 742 (837)
.. ...+... ..+++++.++.|++.+.|...|.|.+|++.+|.....+ ..|..+|++++.+.-++.++++
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa 511 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA 511 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEc
Confidence 00 0011111 23678888999999999999999999999999988888 4799999999999989989888
Q ss_pred e-CCeEEEEEcCCCCCc--------------------------------------eeEEEeecCCCceEEEEEeCCCCEE
Q 003236 743 S-DELVRVWSIGSGSKG--------------------------------------ECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 743 s-Dg~I~IwDl~s~~~~--------------------------------------~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
+ +|.+++||+...... +.++.+.+|.+.|++++|||||++|
T Consensus 512 ~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWl 591 (910)
T KOG1539|consen 512 GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWL 591 (910)
T ss_pred cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEE
Confidence 8 999999998764310 1122456789999999999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC-CcEEEe
Q 003236 784 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 836 (837)
Q Consensus 784 ~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D-G~I~IW 836 (837)
++++.|++|++||+.++.++-...-+.+.+++.|+|+|.+|||+..| .-|++|
T Consensus 592 isasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 592 ISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred EEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 99999999999999999999777778899999999999999999988 679999
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=239.94 Aligned_cols=317 Identities=15% Similarity=0.227 Sum_probs=255.1
Q ss_pred cCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 504 ~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
...+++.+|+.|+.++.|........ ..-..+..+..|.+.|..+....+++.|++++.|-+|++|+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~ 101 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN 101 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence 34568999999999999966544211 00113567789999999999999999999999999999999
Q ss_pred CCCC--eEEEEeccCCCCeEEEEE-cCCCCEEEEEeCCCeEEEEEcCCCCc---------eeEEee-ccccceEEEEEcC
Q 003236 584 TESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHP 650 (837)
Q Consensus 584 ~~t~--~~~~~l~~h~~~I~~l~f-spdg~~Latgs~Dg~I~IWDl~~~~~---------~~~~~~-~h~~~V~sl~fsp 650 (837)
...+ -++.++..|.+.|.|+++ -++..++|+|+.|+.|.|||++++.. ....+. ++...|++++-++
T Consensus 102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 8877 577889999999999999 77889999999999999999996521 122333 7889999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEE
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 729 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~s 729 (837)
.+ .++++|+..+.|++||.++++.+..+.. ...|.++..+++|..+++++.||+|++||+...+|+.++..|...|.+
T Consensus 182 t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 182 TG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred cc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence 87 5888999999999999999988877775 457999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-----
Q 003236 730 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----- 803 (837)
Q Consensus 730 l~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~----- 803 (837)
+..+|+-.++++|+ |+.|..-|+++......+ -....+|..+..+....-+-+++.|+.|+-|...-...+
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli---ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~ 337 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI---CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGD 337 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCchhheEe---ecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCC
Confidence 99999999999999 999999999986322222 223566777777765555688888888888865321111
Q ss_pred --------------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 804 --------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 804 --------------------~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
........|...++-.|.++++|=...|.+.+||
T Consensus 338 ~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 338 LDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred CCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 0011112344445556788999999999999997
No 97
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.7e-24 Score=225.59 Aligned_cols=283 Identities=17% Similarity=0.250 Sum_probs=237.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--CCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~~~~ 630 (837)
..+.|+||.|+|...+|++++.|++++||-++ ....+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 34679999999999999999999999999765 3445666666778999999999999 89999999999999999866
Q ss_pred ce-eEEeeccc-cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 631 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 631 ~~-~~~~~~h~-~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
.. +....++. ..+..+..++++. +|+..+..|.|.+....+++.+..++.++.+..++|+.+++.|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 42 22333333 4577788899977 666788899999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCC-CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC---CCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 709 LDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 709 wDl~s~~~~~~l~~h~~-~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~---~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
||++...+++.+....+ .-+++|.++++.|||+|+ .|.|.|||..+. ..++++..+..-...|+++.|+++...|
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL 450 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL 450 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence 99999999998874322 335778889999999999 889999997653 3346777777778899999999999988
Q ss_pred EEEEc--CCeEEEEECCCCcEE-Eec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 784 LVIGC--YETLELWNMTENKTL-TLS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 784 ~sgs~--dg~I~IwDl~s~~~~-~l~---~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.++. .+.+++..+.+..+. .+. ..-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 88776 458999999887776 222 3345799999999999999999999999995
No 98
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.4e-23 Score=224.55 Aligned_cols=277 Identities=18% Similarity=0.262 Sum_probs=234.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---eEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
.|..-|.++.+|...++++||+. |.|+|||+... ..+..+. .....|.++.+.|||+.|++|++-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 78888999999999999999985 78999998642 2333332 345789999999999999999999999999999
Q ss_pred CCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCe
Q 003236 628 NPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 628 ~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~ 705 (837)
.....++. +....-.++.++.+||.+ +.++|..||.|.|||+.+...++.|.. ..++.||.++++|..|.+|+-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 76644432 333334577899999976 555777799999999999999999985 568999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
|+.||++++..+.... ..+.|.++..+|.+.+|++|- .+.|.|...... ..+.+.-|...|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCceee
Confidence 9999999987665443 567899999999999999999 778888877654 3455667889999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 785 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+.+.|+.+-.|...-|..+--......|.++.++.|.+||+||+.|....||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999988877666777899999999999999999999887776
No 99
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.1e-23 Score=233.67 Aligned_cols=275 Identities=16% Similarity=0.266 Sum_probs=230.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE--EEeccCCCCeEE-EEEcC-CCCEEEEEeCCCeE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRTV 621 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~h~~~I~~-l~fsp-dg~~Latgs~Dg~I 621 (837)
+.-+.+.+|...|..|++.+.. .++++++||++++|+-.....+ ..+.+|.+.|.+ ++|.+ ++-.|++|+.|.+|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 3456788999999999887544 8999999999999996554433 456778888888 88886 45569999999999
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEE
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llag 700 (837)
.+|...... ++.++.+|...|.|++...++. +++|+.|.++++|-+. ++...+. |...|..+...|++ .+++|
T Consensus 84 ~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 84 IVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred EEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEec
Confidence 999999755 6899999999999999877654 6799999999999775 3333344 45678899998886 89999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 701 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
+.|..|++|.- ++++.+|.+|.+.|+.+++-+++.+|.++.||.|++|++ ++ +++.+..+|.+-++++....++
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecCCC
Confidence 99999999986 678899999999999999999888777777999999999 44 7899999999999999988888
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 781 PSLLVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~~~~~l~~h~-~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
..|++++.|++++||+.. ++.....|. ..|+++.+-++|. |++|+.||.|+||
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 899999999999999977 555444444 4899999887775 5678889999998
No 100
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.4e-23 Score=223.88 Aligned_cols=279 Identities=20% Similarity=0.294 Sum_probs=227.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE----EE---e-----------ccCCCCeEEEEEcCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----ST---L-----------EEHTQWITDVRFSPSL 609 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~----~~---l-----------~~h~~~I~~l~fspdg 609 (837)
+..+..|.-+|+||+++||.+++++++.|++|.=|++.+++.. .. + +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 7788899999999999999999999999999999998877633 11 0 2688899999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEE
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQM 688 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl 688 (837)
+||++|+.|..|.||+..+.+. +..+.+|.+.|.+++|-..- .-+++++.|+.|++|++.....+.++ .+.+.|..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998764 78899999999999998654 45568889999999999987766654 457789999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-c
Q 003236 689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C 766 (837)
Q Consensus 689 ~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~ 766 (837)
.....++.+-+|+.|.++++|++. ......+.+|.+.+-|++|-.+.. +++|+ +|.|.+|++...+ ++.+.. .
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKk---plf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKK---PLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccC---ceeEeecc
Confidence 888887888888899999999994 344556778999999999986554 55566 9999999998763 333221 1
Q ss_pred C-----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc----EEEeccCCCCeeEEEEeCCCCEEEEE-ECC
Q 003236 767 T-----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASA-SHD 830 (837)
Q Consensus 767 ~-----------~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~----~~~l~~h~~~V~sla~spdg~~LaSg-s~D 830 (837)
| ...|++++..|..+.+++|+.+|.|++|-+.++- ++.-..-.+.|++|+|+++|+.|++| +..
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccc
Confidence 1 1278999999999999999999999999998882 33333567889999999999965555 444
Q ss_pred CcE
Q 003236 831 KCV 833 (837)
Q Consensus 831 G~I 833 (837)
..+
T Consensus 448 hRl 450 (479)
T KOG0299|consen 448 HRL 450 (479)
T ss_pred ccc
Confidence 333
No 101
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=5.3e-22 Score=214.03 Aligned_cols=286 Identities=14% Similarity=0.124 Sum_probs=212.2
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~ 585 (837)
.++++++.|+.+.+|..... ..+..+..|.. +.+++|+|+++.+ ++++.++.|++||..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 45677888899999964322 12344444443 6789999999976 566788999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
+++....+..+.. +..++|+|+++.++++ +.|+.|++||+.+... +..+. +...+.+++|+|++..++++...+..
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCe
Confidence 9888877765544 5788999999877655 5689999999987543 44443 23457889999998865544433346
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCC-----C--CEEEEEEcCCC
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK-----N--QVHSVCWNTSG 736 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l~~h~-----~--~V~sl~~spdg 736 (837)
+.+||.++++.+........+.++.|++++..+++++ .++.|.+||+++++.+..+..+. . ....++|+|++
T Consensus 139 ~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 139 AHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred EEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence 7788999888777665556678899999999887665 58999999999988776654221 1 23568899999
Q ss_pred CEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEeccCCCCee
Q 003236 737 EYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVS 813 (837)
Q Consensus 737 ~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~~~~~l~~h~~~V~ 813 (837)
++++++. ++.|.+||+.++ +.+..+. +...+.+++|+|++.+|++++ .++.|.+||+.+++++.........+
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 294 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPW 294 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccc
Confidence 9865543 778999999876 3333332 345788999999999998875 58899999999999874444556778
Q ss_pred EEEEeC
Q 003236 814 SLAAST 819 (837)
Q Consensus 814 sla~sp 819 (837)
.++++|
T Consensus 295 ~~~~~~ 300 (300)
T TIGR03866 295 GVVVRP 300 (300)
T ss_pred eeEeCC
Confidence 888865
No 102
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-23 Score=233.11 Aligned_cols=239 Identities=21% Similarity=0.324 Sum_probs=211.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|+.......
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 78899999999999999999999999999999999999988 99999999998 6789999999999999999877656
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCC-CEEEEEE--cCCeEEEE
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRL-GRILAAA--IENYISIL 709 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl~~sp~g-~~llags--~dg~I~iw 709 (837)
..+.+|...|..+.|++|+. .+++|+.|+.|.|||.........+ .+...|..++|+|-. +.|++|+ .|+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 66889999999999999976 7779999999999999766655555 456789999999954 4555554 48999999
Q ss_pred ECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 710 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 710 Dl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
|..+++.+..+. ..+.|++|.|++..+-|+++. ++.|.||++.+. ..+..+.+|...|..++++|||..|+++
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999888776 567899999999987666654 779999999886 7888999999999999999999999999
Q ss_pred EcCCeEEEEECCCC
Q 003236 787 GCYETLELWNMTEN 800 (837)
Q Consensus 787 s~dg~I~IwDl~s~ 800 (837)
+.|.++++|++-+.
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
No 103
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=2.8e-23 Score=207.96 Aligned_cols=234 Identities=19% Similarity=0.291 Sum_probs=212.5
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 003236 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (837)
Q Consensus 592 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~ 671 (837)
.+.+|+.+++.|.|+.+|.+|++|+.|.++.||-..+++ .+-++.+|.+.|+|++.+.+.. .+++|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-rlGty~GHtGavW~~Did~~s~-~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-RLGTYDGHTGAVWCCDIDWDSK-HLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-eeeeecCCCceEEEEEecCCcc-eeeeccccceeEEEEcC
Confidence 457899999999999999999999999999999887766 4899999999999999998866 55699999999999999
Q ss_pred CCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-----CeEEEEECC-------CCeEEEEEcCCCCCEEEEEEcCCCCEE
Q 003236 672 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-----NYISILDVE-------TQVCRLKLQGHKNQVHSVCWNTSGEYL 739 (837)
Q Consensus 672 t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-----g~I~iwDl~-------s~~~~~~l~~h~~~V~sl~~spdg~~L 739 (837)
+|+++..++.+..|..+.|++++++++++..+ +.|.++|++ ..++...+..+.+.++.+.|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999999999999999999999988887764 579999998 456688888899999999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEe
Q 003236 740 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 818 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~s 818 (837)
++|. ||.|.+||++++. ..+.....|...|+.+.+++|..++++++.|.+-++||+.+..++.....+.+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 9999 9999999999974 566667788899999999999999999999999999999999999888889999999999
Q ss_pred CCCCEEEEEEC
Q 003236 819 TVNGMVASASH 829 (837)
Q Consensus 819 pdg~~LaSgs~ 829 (837)
|...+++.|+.
T Consensus 241 P~~d~VilgGG 251 (327)
T KOG0643|consen 241 PLLDHVILGGG 251 (327)
T ss_pred cccceEEecCC
Confidence 98887777653
No 104
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1e-22 Score=235.38 Aligned_cols=229 Identities=17% Similarity=0.233 Sum_probs=176.4
Q ss_pred EEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCe--------EEEEeccCCCCeEEEEEcCCCCE-EEEEe
Q 003236 547 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATSS 616 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~--------~~~~l~~h~~~I~~l~fspdg~~-Latgs 616 (837)
.+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|...|.+|+|+|++.. |++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 56778999999999999996 7899999999999999997532 34567889999999999998875 57899
Q ss_pred CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeE-----EEE
Q 003236 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQ-----MRF 690 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~s-----l~~ 690 (837)
.|++|+|||+.++.. +..+. |...|.+++|+|+|. +|++++.|+.|++||+++++.+..+..+.. +.+ ..|
T Consensus 146 ~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f 222 (568)
T PTZ00420 146 FDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL 222 (568)
T ss_pred CCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence 999999999998764 44444 567899999999987 566777899999999999998888775443 222 234
Q ss_pred ecCCCEEEEEEcCC----eEEEEECCC-CeEEEEEc--CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE
Q 003236 691 QPRLGRILAAAIEN----YISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 762 (837)
Q Consensus 691 sp~g~~llags~dg----~I~iwDl~s-~~~~~~l~--~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~ 762 (837)
++++++|++++.++ .|+|||++. ..++..+. .+.+.+......+++.++++|+ |+.|++|++..+. ...+.
T Consensus 223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~ 301 (568)
T PTZ00420 223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVN 301 (568)
T ss_pred cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeec
Confidence 58889999988774 799999995 45555443 2333333444455688888887 9999999998752 12333
Q ss_pred EeecCCCceEEEEEeCCC
Q 003236 763 ELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 763 ~~~~~~~~I~sv~fspdg 780 (837)
.+. +..++..++|.|..
T Consensus 302 ~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 302 EYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ccc-cCCCccceEEcccc
Confidence 333 55678889999974
No 105
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=9.7e-24 Score=226.88 Aligned_cols=285 Identities=16% Similarity=0.233 Sum_probs=219.0
Q ss_pred CCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEE
Q 003236 493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT 572 (837)
Q Consensus 493 ~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Las 572 (837)
|+-.++.-.++.....+++|++|.+|+.|+-..-... -..|+.+. ......|.++.|++.|..|++
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas------------~~~fr~l~--P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS------------MRSFRQLQ--PCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEeccccccc------------chhhhccC--cccccccceeeecCCCCeEEE
Confidence 3344455556667778899999999999966442111 11122222 344556999999999998888
Q ss_pred EECCCcEEEEeCCCCeEEEEe------------ccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeEEee--
Q 003236 573 GGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT-- 637 (837)
Q Consensus 573 gs~Dg~I~VWd~~t~~~~~~l------------~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~~~~~~~-- 637 (837)
.+..-.++|+|-+........ ++|...++|.+|+|+ ...++|++.||+++|||+...+.....+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k 311 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK 311 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence 888889999997665544332 579999999999996 45799999999999999997664343333
Q ss_pred ---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE--e--c--CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 638 ---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K--C--QSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 638 ---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~--~--~--~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
+..-.+++++|++++.. |++|..||.|.+|+.........+ . | ...|+|+.|+++|++|++-+.|+.+++
T Consensus 312 ~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 312 PAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred cCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 23457899999999885 778888999999998653322222 1 2 347999999999999999999999999
Q ss_pred EECCCC-eEEEEEcCC--CCCEEEEEEcCCCCEEEEEe-------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 709 LDVETQ-VCRLKLQGH--KNQVHSVCWNTSGEYLASVS-------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 709 wDl~s~-~~~~~l~~h--~~~V~sl~~spdg~~Lasgs-------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
||++.. +++....+- ..+-+.++|+|+.++|++|+ .+.+.+||..+. ..+..+......|..|.|+|
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCCCceEEEEeecc
Confidence 999975 566555543 33567899999999999986 247999998877 67777777788999999999
Q ss_pred CCCEEEEEEcCCeEEEE
Q 003236 779 TFPSLLVIGCYETLELW 795 (837)
Q Consensus 779 dg~~L~sgs~dg~I~Iw 795 (837)
.-+.|++++.||.++||
T Consensus 468 kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 468 KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred hhhheeeecCCCceEEE
Confidence 99999999999998887
No 106
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.2e-23 Score=212.62 Aligned_cols=277 Identities=20% Similarity=0.310 Sum_probs=221.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
-.|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+..+.. +..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-LKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-eeEEE
Confidence 78999999999999999999999999999998899999999999999999999999999999999999998873 44443
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-----~~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
...+|+.+.|+|.+.+.++++-.+..-.+.++..++....-.. +....+..|.+.|++|++|...|.+.+||..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 5789999999998777776666565566666654322211111 1123445689999999999999999999999
Q ss_pred CCeEEEEEcCCC-CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------CceeEEEee--cCCCceEEEEEeCCCCE
Q 003236 713 TQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGECIHELS--CTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 713 s~~~~~~l~~h~-~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~~~i~~~~--~~~~~I~sv~fspdg~~ 782 (837)
+.+++..++-.. ..|..+.|+..|++|+.-+ |..||.|++..-. ..+..+++. .....-.+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999998888665 7899999999999999877 9999999987321 111111111 12334578999999999
Q ss_pred EEEEEcCC-eEEEEECCCCcEEE-eccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYE-TLELWNMTENKTLT-LSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg-~I~IwDl~s~~~~~-l~~h~-~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+++++... .++||....|.+++ +.+.. .....+.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 98887543 89999999999884 44555 568899999998888887 779999994
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.8e-23 Score=210.03 Aligned_cols=259 Identities=19% Similarity=0.310 Sum_probs=208.8
Q ss_pred EEEEECCCcEEEEeCCC------------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 570 LATGGHDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t------------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
|++|++...|.-+++.. ...+..+..|.+.|++++.+ +.++|+||.|-+|+|||+..... +..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~q-lg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQ-LGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhh-hccee
Confidence 56677776666665432 22345677899999999985 78999999999999999997554 77888
Q ss_pred ccccceEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 638 GHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~-~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
.|.+.|+++.|.+.-. .-|++|+.||.|.+|+....+++..++. .+.|+.++++|.++..++.+.|+.+++||+-.++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 8999999999998743 1344999999999999999999999885 4569999999999999999999999999999887
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 716 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 716 ~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
.-+.+. -...-+.|.|+|.|.+++.+....|-||.+.+.. .+.++. ....+.++.|. ++..|++|+.|+.|.+|
T Consensus 161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~---v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 161 VAFVLN-LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS---VFREIE-NPKRILCATFL-DGSELLVGGDNEWISLK 234 (362)
T ss_pred cceeec-cCCcceeeEEcCCCCEEEEEeccEEEEEecccHh---Hhhhhh-ccccceeeeec-CCceEEEecCCceEEEe
Confidence 665554 2233455999999999999887889999988752 222222 22445666665 45579999999999999
Q ss_pred ECCCCcEE-EeccCCCCeeEEEEe--CCCCEEEEEECCCcEEEeC
Q 003236 796 NMTENKTL-TLSAHDKLVSSLAAS--TVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 796 Dl~s~~~~-~l~~h~~~V~sla~s--pdg~~LaSgs~DG~I~IWd 837 (837)
|.++..+. .+.+|...|.++.+- |++.+|+|++.||.|+|||
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 99987776 778999999999853 5678999999999999997
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=3.7e-23 Score=229.58 Aligned_cols=260 Identities=18% Similarity=0.304 Sum_probs=223.5
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEE-EEEcC-CCCEEEEEECCCcEEEEeC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~s-l~fSp-dg~~Lasgs~Dg~I~VWd~ 584 (837)
..+.++|.|+++++|.-.+ ..+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|++|.+|..
T Consensus 26 ~~i~s~sRd~t~~vw~~~~-----------------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~ 88 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAKKG-----------------KQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL 88 (745)
T ss_pred eEEeecCCCCceeeeeccC-----------------cccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence 3588899999999995433 334455677788888888 88886 5557999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
....++.++.+|...|+|+....++. +++||+|.+++||.... +...+.+|...|+++++.|++ .+++|+.|.+
T Consensus 89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKt 162 (745)
T KOG0301|consen 89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKT 162 (745)
T ss_pred CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcce
Confidence 99999999999999999999888877 99999999999998875 345589999999999999986 5669999999
Q ss_pred EEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
|++|.- ++++.+|.. ...|..+++-++ ..|++++.||.|++|++ +++++.+..+|.+.|+++....++..+++++
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence 999976 677777775 455888888876 56889999999999999 7899999999999999999777778888888
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 744 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
|++++||+.. +|...+......|+++.+-++|+ |++|++||.|+||....
T Consensus 239 EDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 239 EDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCceEEEeecC-----ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9999999875 67777777777999999999987 99999999999998764
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=3e-24 Score=222.56 Aligned_cols=267 Identities=16% Similarity=0.243 Sum_probs=225.2
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
..+++|+.||.|++|..... .++.++.+|.+.|..|+++. ..+++++.|++|+.|.++.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR-------------------~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQR-------------------ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hhhhccccCceEEEEehhhh-------------------hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 35789999999999955332 35678899999999999986 6788999999999998775
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
....++. ....+..|.-+..+..++||+.+ |.|||..... ++..+.-....|.++.|+|....+|++|+.|+.|.
T Consensus 139 -~p~~til-g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 139 -PPLHTIL-GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred -Ccceeee-ccccccccccccccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 3666664 34567777777777889998765 9999998643 57777777788999999999999999999999999
Q ss_pred EEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C
Q 003236 667 YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 744 (837)
Q Consensus 667 vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D 744 (837)
+||++.+.++..+...-..+.|+|+|..-.++++.+|..++.||++.- .++..+.+|.+.|.+++|+|.|.-+++|+ |
T Consensus 214 LyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD 293 (433)
T KOG0268|consen 214 LYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD 293 (433)
T ss_pred EEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence 999999999999988888999999998777888999999999999975 67788889999999999999999999999 9
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 745 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 745 g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
.+|+||.++.+......++. .-..|.++.|+-|..+|++|+.|+.|++|.....+
T Consensus 294 ksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 294 KSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 99999999877432222221 13468999999999999999999999999875443
No 110
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.7e-22 Score=205.65 Aligned_cols=276 Identities=18% Similarity=0.258 Sum_probs=214.4
Q ss_pred cccCCCCCceEEEEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecC
Q 003236 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (837)
Q Consensus 474 ~~~~~s~~~s~~~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 553 (837)
+..++.++.+.+.|++. .+.+++.||-|++||+|...+.... . -+....
T Consensus 22 v~~pP~DsIS~l~FSP~--------------~~~~~~A~SWD~tVR~wevq~~g~~---------------~--~ka~~~ 70 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQ--------------ADNLLAAGSWDGTVRIWEVQNSGQL---------------V--PKAQQS 70 (347)
T ss_pred cCCCcccchheeEeccc--------------cCceEEecccCCceEEEEEecCCcc---------------c--chhhhc
Confidence 33444556677777772 3478889999999999977654211 0 133457
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCCc
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~--~Latgs~Dg~I~IWDl~~~~~ 631 (837)
|.++|.+++|+.||..+++|+.|+.+++||+.++. ...+..|.++|.++.|-+... .|+|||.|++|+.||.+....
T Consensus 71 ~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 71 HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred cCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 99999999999999999999999999999999984 456668999999999988655 899999999999999997553
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-Ee--cCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK--CQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~--~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
+..+. ..+.|++++.- ..+++.+..+..|.+|+++++..... .. ..-.+.|+++..+....+.|+-+|.+.|
T Consensus 150 -v~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~i 224 (347)
T KOG0647|consen 150 -VATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAI 224 (347)
T ss_pred -eeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEE
Confidence 44443 34667777765 23666777799999999986543322 11 2345889999999888999999999999
Q ss_pred EECCCC--eEEEEEcCCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 709 LDVETQ--VCRLKLQGHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 709 wDl~s~--~~~~~l~~h~~---------~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
..+..+ +.-..|+.|.. .|++|+|+|....|++++ ||++.+||-... ..+.+...+..+|+++.|
T Consensus 225 q~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~f 301 (347)
T KOG0647|consen 225 QYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCSF 301 (347)
T ss_pred EecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeEe
Confidence 988876 44556666652 577899999877777765 999999998766 566677788999999999
Q ss_pred eCCCCEEEEEEcC
Q 003236 777 HPTFPSLLVIGCY 789 (837)
Q Consensus 777 spdg~~L~sgs~d 789 (837)
+.+|.+++.+.+.
T Consensus 302 n~~G~ifaYA~gY 314 (347)
T KOG0647|consen 302 NRNGSIFAYALGY 314 (347)
T ss_pred cCCCCEEEEEeec
Confidence 9999988876553
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.2e-22 Score=204.02 Aligned_cols=247 Identities=19% Similarity=0.276 Sum_probs=203.5
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe-CCCcE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEI 665 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs-~Dg~I 665 (837)
.+..+.+......|+++.|+++|.+|++++.|.+|+|||..+++. ++++..+...|..++|......++.+.. .|.+|
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 344556666778999999999999999999999999999998775 7777778788899999876665554433 48899
Q ss_pred EEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++.++.+.+.++.|..+ ..|..++.+|.+..+++++.|++|++||++..++...+..... ..++|+|.|-++|++.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecC
Confidence 99999999999999864 5699999999999999999999999999998877766653333 3578999999999998
Q ss_pred CCeEEEEEcCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCC---eeEEE
Q 003236 744 DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL---VSSLA 816 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~---~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~---V~sla 816 (837)
.+.|++||+++-.+ .+..++. ....+.+.+.|+|||++|+.++..+.+++.|.-+|... .+..+... --..+
T Consensus 161 ~~~IkLyD~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SELIKLYDLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCeEEEEEecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 44999999998643 2233332 34678899999999999999999999999999999877 44444322 25678
Q ss_pred EeCCCCEEEEEECCCcEEEeC
Q 003236 817 ASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 817 ~spdg~~LaSgs~DG~I~IWd 837 (837)
|+||+++|++|+.||+|.||+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEE
Confidence 999999999999999999996
No 112
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.9e-23 Score=224.81 Aligned_cols=291 Identities=18% Similarity=0.232 Sum_probs=234.5
Q ss_pred CCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCC--EEEEEeCC
Q 003236 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSAD 618 (837)
Q Consensus 541 ~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~--~Latgs~D 618 (837)
..++..+...+++|++.|.||...|.|.+||+|+.||+|+||.+.+++++.++. ..+.|.||+|+|.+. .||++-.+
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence 346666777899999999999999999999999999999999999999999885 566899999999654 34444333
Q ss_pred CeEEEEEcCCC------------------------------------CceeEEeeccccceEEEEEcCCCCeEEEEEeC-
Q 003236 619 RTVRVWDTENP------------------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN- 661 (837)
Q Consensus 619 g~I~IWDl~~~------------------------------------~~~~~~~~~h~~~V~sl~fspdg~~llasgs~- 661 (837)
.+.|.+..-+ ..-++....|...|..+.|+..|+++..++..
T Consensus 465 -~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 465 -CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred -ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 3444432211 11133455688899999999999977655543
Q ss_pred -CCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEE
Q 003236 662 -NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 739 (837)
Q Consensus 662 -Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~L 739 (837)
...|.|.++........|. ..+.+.++.|+|...++++++. ..|+|||+.....++.+.....+|.+++++|.|..|
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 3578999998877776664 4577999999999887777664 789999999988888877778899999999999999
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC------CCC-cEE---EeccC
Q 003236 740 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM------TEN-KTL---TLSAH 808 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl------~s~-~~~---~l~~h 808 (837)
++++ |+.+..||+.-.. +...++..|...+++++|++....+++++.|+++.||.- -.+ .++ .+.+|
T Consensus 623 i~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred EEecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 9998 9999999998664 567788889999999999999999999999998888742 112 222 56788
Q ss_pred CCC----eeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 809 DKL----VSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 809 ~~~----V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
... |..+.|+|.-.+|++++.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 665 8999999999999999999999999
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.9e-23 Score=206.76 Aligned_cols=247 Identities=21% Similarity=0.290 Sum_probs=203.8
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---eEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEc
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl 626 (837)
..|.+.|..+...--|+.|||++.|++|+||.+.+. ..+.++.+|.++|+.++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 479999999998889999999999999999998753 57889999999999999976 6999999999999999999
Q ss_pred CCCCc-eeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCC--eee--eEEecCCCeeEEEEecC---C---
Q 003236 627 ENPDY-SLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG--SCA--GVFKCQSGATQMRFQPR---L--- 694 (837)
Q Consensus 627 ~~~~~-~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~--~~i--~~~~~~~~i~sl~~sp~---g--- 694 (837)
+++.. ....+..|...|++++|.|.+ ..+|++++.||.|.|.+++.. -.. ..+.+.-++++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 88754 235667899999999999975 446778889999999998764 111 22234567999999986 4
Q ss_pred --------CEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEEcCCCCCce
Q 003236 695 --------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSKGE 759 (837)
Q Consensus 695 --------~~llags~dg~I~iwDl~s~--~~~~~l~~h~~~V~sl~~spdg----~~Lasgs-Dg~I~IwDl~s~~~~~ 759 (837)
+.|++|+.|+.|+||+..++ +...++.+|.+.|+.++|.|.- .+|++++ ||+|.||..+.....-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 56999999999999999875 3445588999999999999964 5799999 9999999987442222
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
....++.....+..+.|+..|..|++++.|+.|.+|.-.
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 333344456789999999999999999999999999643
No 114
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=2.1e-22 Score=223.43 Aligned_cols=335 Identities=20% Similarity=0.264 Sum_probs=248.4
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCC--CccccccccCCCeeee---EE-------EEecCCCCCeEEEEEcCC
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPR--DRVGRSAEVGKGFTFT---EF-------QLIPASTSKVESCHFSPD 566 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~--~~~~~~~~~~~g~~~~---~~-------~~l~~H~~~V~sl~fSpd 566 (837)
...+...+.+++++|-|..|++|......+.. .+........+...+. ++ ..+-||.+.|.++.|+|+
T Consensus 199 f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~ 278 (764)
T KOG1063|consen 199 FARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPE 278 (764)
T ss_pred hhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccc
Confidence 33344467899999999999999443322111 1100000011111111 12 345599999999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCC--eEEE--E---eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEee
Q 003236 567 GKLLATGGHDKKAVLWCTESF--TVKS--T---LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFT 637 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~--~~~~--~---l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~ 637 (837)
+..|++++.|+++.||..++. --+. . ..+.....+...|+|+++.+++-+..|-.++|...+... ....+.
T Consensus 279 ~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iS 358 (764)
T KOG1063|consen 279 GLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVIS 358 (764)
T ss_pred hhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccc
Confidence 999999999999999976543 2222 2 233455689999999999999999999999999433222 235678
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-----eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-----~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
||...|.+++|+|.|++++ +.+.|-+-++|-.-..+ ..+.-.+...++|+++-+..-.+++|+.+..+++|+..
T Consensus 359 GH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 359 GHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred cccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 9999999999999998555 88889999988654111 11111235568899998865677778888888888542
Q ss_pred C-------------------------------------------CeE---------------------------------
Q 003236 713 T-------------------------------------------QVC--------------------------------- 716 (837)
Q Consensus 713 s-------------------------------------------~~~--------------------------------- 716 (837)
. +..
T Consensus 438 k~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPE 517 (764)
T KOG1063|consen 438 KSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPE 517 (764)
T ss_pred HHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchh
Confidence 1 000
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 717 RLKLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 717 ~~~l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
+..+.+|...|++++.+|+++++|++. . ..|++|+..+. ..+..+..|.-.|+.++|+||+++|++.+.|.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 122347888999999999999999986 2 27999998876 56668889999999999999999999999999
Q ss_pred eEEEEECCCCcEE-----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 791 TLELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 791 ~I~IwDl~s~~~~-----~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.+|........ ....|...|+++.|+|++.++||+|.|.+|+||.
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999998554433 4678999999999999999999999999999994
No 115
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=7.9e-23 Score=226.07 Aligned_cols=245 Identities=21% Similarity=0.348 Sum_probs=213.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp---dg~~Latgs~Dg~I~IWDl~~~ 629 (837)
+....|.|++.||+|.+||+|..-|+++||++.+.+....++.|...|.|+.|+. ..++||+++.|..|+|||+..+
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 4455699999999999999999999999999999999999999999999999986 3678999999999999999987
Q ss_pred CceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeeEEe------cCCCeeEEEEecCCCEEEEEEc
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~------~~~~i~sl~~sp~g~~llags~ 702 (837)
-..+.++.+|...|+++.|.-.| +.-.++|+.|..|.+--.........|. .+..++.+++.|..+++++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 77789999999999999998765 3455688889877654333211111111 1356889999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 703 ENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
|..|+|||+.+++.++.|++ |++....+..+|.|.||++.. |.++.++|+.++ +|+....+|...|+.+.|.+
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeecc
Confidence 99999999999999999986 667888899999999999877 999999999998 89999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCC
Q 003236 779 TFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~ 800 (837)
|-++|++.+.||+|.||.+...
T Consensus 694 DCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred cchhheeecCCceEEEEECchh
Confidence 9999999999999999998653
No 116
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=213.12 Aligned_cols=270 Identities=17% Similarity=0.205 Sum_probs=228.3
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
.++.+|+.|.++.+|+-... ..+.+++||...|+.+.|+++...+++++.|..|+||....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~-------------------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~ 292 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSN-------------------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL 292 (506)
T ss_pred CcceecCCCCceEEEecchh-------------------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence 67789999988888844332 33577899999999999999999999999999999999988
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee-ccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
......+..|.++|+.+..+|.|.||++++.||+..+.|+.++........ ...-.+++++|+|||- +|.+|..|+.|
T Consensus 293 ~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~v 371 (506)
T KOG0289|consen 293 SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGVV 371 (506)
T ss_pred ccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCceE
Confidence 888888889999999999999999999999999999999998775332222 2234589999999965 88899999999
Q ss_pred EEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe
Q 003236 666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h-~~~V~sl~~spdg~~Lasgs 743 (837)
+|||+.+...+..|.. .++|..+.|+.+|.++++++.|+.|++||++..+...++... ...|.+++|+..|.+|++++
T Consensus 372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 9999999988888875 567999999999999999999999999999998777666542 34799999999999999986
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 744 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
|=.|++++-.+. ...++..+..|.+..+.+.|.....++++++.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEecccc-cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 556666664432 34677788888888999999999999999999999888764
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=7e-23 Score=229.68 Aligned_cols=274 Identities=19% Similarity=0.359 Sum_probs=216.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCC----eEEEEecc---CCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC-
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEE---HTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN- 628 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~---h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~- 628 (837)
+.+|...++-.-|++++. ..+.||.+... ++...++. -...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence 456667788777888775 36777765432 22222211 112456788875 478999999999999999986
Q ss_pred -CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecC-CCEEEEEEcCCe
Q 003236 629 -PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPR-LGRILAAAIENY 705 (837)
Q Consensus 629 -~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~-g~~llags~dg~ 705 (837)
....+..|..|...|.+++|++...++|++|+.||+|++||++..+...++... ..|..+.|+|. +.+++++...|.
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCce
Confidence 233466888999999999999999999999999999999999998888877764 45999999995 456777777899
Q ss_pred EEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 706 ISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 706 I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
+.+||++.. .+...+..|.++|.|+.|+|++.+||+|+ |+.|+|||..+... ..++++. ...++.++.|-|+..+.
T Consensus 201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~h 278 (839)
T KOG0269|consen 201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSYH 278 (839)
T ss_pred EEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccch
Confidence 999999975 67788889999999999999999999999 99999999987543 3333433 36789999999998765
Q ss_pred EEEEc---CCeEEEEECCCCcEE--EeccCCCCeeEEEEeC-CCCEEEEEECCCcEE
Q 003236 784 LVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK 834 (837)
Q Consensus 784 ~sgs~---dg~I~IwDl~s~~~~--~l~~h~~~V~sla~sp-dg~~LaSgs~DG~I~ 834 (837)
++.+. |-.|+|||++..-+- .+..|...++.++|.. |...|.+++.||+|.
T Consensus 279 LAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 279 LATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 55443 559999999876543 7889999999999975 445888999999864
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=216.07 Aligned_cols=230 Identities=23% Similarity=0.286 Sum_probs=202.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN----- 628 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~----- 628 (837)
-.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.|+.+|+||+.||.|.+|++.+
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 356799999999999999998999999999999999999999999999999999999999999999999998742
Q ss_pred ---CCceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC
Q 003236 629 ---PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 629 ---~~~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg 704 (837)
.-.++..+..|+-+|+++...+.+ +..+++++.|.+|++||+..+..+..+..+..+.+++.+|.+..+++|+.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence 224578899999999999987652 4467799999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCC----------------eEEEEEcCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003236 705 YISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 705 ~I~iwDl~s~----------------~~~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 765 (837)
.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+ ||.|+|||+.+. .+++++.
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~ 316 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQ 316 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHh
Confidence 9999877532 34556778888 999999999999999999 999999999887 7777777
Q ss_pred cCCCceEEEEEeCCCCEEEEE
Q 003236 766 CTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sg 786 (837)
...++|+.+.+.|-.+.++.+
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l~ 337 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIILF 337 (476)
T ss_pred hhccccceeEeeccccceecc
Confidence 678889999887665444443
No 119
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=3.7e-22 Score=213.38 Aligned_cols=253 Identities=19% Similarity=0.335 Sum_probs=205.4
Q ss_pred EEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCC----------eEEEEeccCCCCeEEEEEcCC-CCEEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF----------TVKSTLEEHTQWITDVRFSPS-LSRLAT 614 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~----------~~~~~l~~h~~~I~~l~fspd-g~~Lat 614 (837)
++...-.|.+.|+.+.+-|.. .++|+++..+.|+|||..+. .+-.++.+|...-++++|++. .-+|++
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEee
Confidence 344455799999999999954 57788888999999997642 222377899988889999984 557999
Q ss_pred EeCCCeEEEEEcCCCCc------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC--CeeeeEEe-cCCCe
Q 003236 615 SSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFK-CQSGA 685 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~~~------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t--~~~i~~~~-~~~~i 685 (837)
++.|++|++||+..... +...+.+|...|..++|++....+|++++.|+.+.|||+++ .++..... +..++
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 99999999999975332 35678999999999999999999999999999999999994 44444443 46789
Q ss_pred eEEEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCC-----
Q 003236 686 TQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGS----- 756 (837)
Q Consensus 686 ~sl~~sp~g~~-llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~----- 756 (837)
.|++|+|-+.+ |++|+.|++|.+||+|+- .++.++.+|...|.+|.|+|... .|++++ |+.+.|||+..-.
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccCh
Confidence 99999996655 556677999999999985 68889999999999999999765 555555 9999999997532
Q ss_pred ------CceeEEEeecCCCceEEEEEeCCCCEE-EEEEcCCeEEEEECCC
Q 003236 757 ------KGECIHELSCTGNKFHSCVFHPTFPSL-LVIGCYETLELWNMTE 799 (837)
Q Consensus 757 ------~~~~i~~~~~~~~~I~sv~fspdg~~L-~sgs~dg~I~IwDl~s 799 (837)
..+.+....+|...|..+.|+|..+.+ ++++.|+.+.||.+..
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 234567778899999999999998765 5567788999999764
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.3e-22 Score=200.86 Aligned_cols=243 Identities=23% Similarity=0.396 Sum_probs=200.7
Q ss_pred ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEeeccccceEEEEEc-CCCCeEEEEEeCCCcEEEEEC
Q 003236 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 594 ~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl 670 (837)
..|.+.|.++...-.|++|+||+.|++|+||.++.+. ..+.++.+|.++|+.++|. |.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4689999999888889999999999999999998765 5678999999999999995 555669999999999999999
Q ss_pred CCCeeeeEEe---cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEcCC---C---
Q 003236 671 NNGSCAGVFK---CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G--- 736 (837)
Q Consensus 671 ~t~~~i~~~~---~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~---~~~~~l~~h~~~V~sl~~spd---g--- 736 (837)
.++.-..... +...+++++|.|. |-.|++++.||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 9885443332 3567999999885 446788999999999988754 334455679999999999985 4
Q ss_pred --------CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCC---
Q 003236 737 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN--- 800 (837)
Q Consensus 737 --------~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg----~~L~sgs~dg~I~IwDl~s~--- 800 (837)
+.|++|+ |..|+||+..++ ....-.++..|...|+.++|.|.- .+|++++.||+|.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 4688888 999999999886 334445588999999999999975 56999999999999976532
Q ss_pred -cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 801 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 801 -~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+...+......++.+.||..|.+|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1223445677899999999999999999999999995
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=6.8e-22 Score=211.32 Aligned_cols=242 Identities=20% Similarity=0.316 Sum_probs=198.1
Q ss_pred ccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc---------eeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 594 EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 594 ~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~---------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
..|.+.|+.+++-|. ..+|++.+..+.|+|||..+... +-..+.+|...-++++|++.....+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 359999999999995 56777888899999999875322 12378899988899999999888899999999
Q ss_pred cEEEEECCCCee-------eeEEe-cCCCeeEEEEecCCC-EEEEEEcCCeEEEEECC--CCeEEEEEcCCCCCEEEEEE
Q 003236 664 EIRYWSINNGSC-------AGVFK-CQSGATQMRFQPRLG-RILAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCW 732 (837)
Q Consensus 664 ~I~vwDl~t~~~-------i~~~~-~~~~i~sl~~sp~g~-~llags~dg~I~iwDl~--s~~~~~~l~~h~~~V~sl~~ 732 (837)
.|++||+..... ...+. +...|..++|++... .|.+++.|+.+.|||++ +.++.....+|...|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999975432 12233 355688999999654 46677788999999999 56777788899999999999
Q ss_pred cCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCc--------
Q 003236 733 NTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENK-------- 801 (837)
Q Consensus 733 spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwDl~s~~-------- 801 (837)
+|- +.+||+|+ |++|++||+|+.. .+++.+..|...|..+.|+|.. ..|++++.|+.+.|||+..-.
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 995 45677777 9999999999875 5899999999999999999986 456777889999999985311
Q ss_pred -------EEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 003236 802 -------TLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 837 (837)
Q Consensus 802 -------~~~l~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWd 837 (837)
++.-.+|...|..+.|+|+.. .|+++++|+.+.||+
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 124568999999999999876 678899999999995
No 122
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.3e-21 Score=196.31 Aligned_cols=283 Identities=20% Similarity=0.328 Sum_probs=219.8
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCe----------EEEE-----eccCCCCeEEEEEcC-CCCEE
Q 003236 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT----------VKST-----LEEHTQWITDVRFSP-SLSRL 612 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~----------~~~~-----l~~h~~~I~~l~fsp-dg~~L 612 (837)
..+.|.+.|.++.+.+ .|+|+++|+.||.|.|||+++.. .+.. -.+|.-.|.++.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3467899999999988 78999999999999999987532 1111 136888999999999 66788
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEE
Q 003236 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMR 689 (837)
Q Consensus 613 atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~ 689 (837)
.+++.|.+++|||..+-.. ...| ...+.|++-+++|- ...++++|..|-.|++.|+.+|.+...+.. ..+|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~-a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQE-AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccccee-eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8999999999999998653 2333 35577888888874 356888898999999999999999999885 56799999
Q ss_pred EecCCCEE-EEEEcCCeEEEEECCCC-eEEEEE--------------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003236 690 FQPRLGRI-LAAAIENYISILDVETQ-VCRLKL--------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 752 (837)
Q Consensus 690 ~sp~g~~l-lags~dg~I~iwDl~s~-~~~~~l--------------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 752 (837)
|+|...++ ++|+.||.|++||++.. .+...+ ..|.+.|..++|..++.++++++ |..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 99988775 56778999999999864 333332 24677899999999999999988 999999999
Q ss_pred CCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003236 753 GSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 753 ~s~~~~~~i~~~~~~~----~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg 827 (837)
.++.....-.....+. ..+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+=....++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 8875321111111111 1111 22 334445555556689999999988887 677898999999999999999999
Q ss_pred ECCCcEEEe
Q 003236 828 SHDKCVKIW 836 (837)
Q Consensus 828 s~DG~I~IW 836 (837)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999888
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.6e-21 Score=219.82 Aligned_cols=276 Identities=14% Similarity=0.228 Sum_probs=219.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
.+|+...+.|+|.|+|++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++|+.+++|.+|.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 378999999999999999999999999999987655 4445554478888888864 4599999999999999998766
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 709 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iw 709 (837)
. -..+...+-++.+++|+-+|. +++.|+.|-.|++.++.+......+. +..+|.++.|+|.+++|++.+.||.|++|
T Consensus 88 ~-~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 E-DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred c-cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 4 345555678899999999877 56688889999999999887777776 46789999999999999999999999999
Q ss_pred ECCCCeEEEEEcCC--------CCCEEEEEEcCCCC-EEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 710 DVETQVCRLKLQGH--------KNQVHSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 710 Dl~s~~~~~~l~~h--------~~~V~sl~~spdg~-~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
|+.++.+...+.+- ...+..++|+|++. +++.+.|+.|++|+..+......+. ...+...+..+.|+|.|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr-~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR-DKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec-ccccccceEEEEEcCCC
Confidence 99998877666531 33566789999955 5555559999999998874322222 22234449999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 781 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
.||++++.+|.|.|||+++... ......|.+++|.|+..-|-.-..-|...+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999998322 334568999999999876655444454433
No 124
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=7.4e-21 Score=204.39 Aligned_cols=302 Identities=18% Similarity=0.258 Sum_probs=231.0
Q ss_pred EEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe
Q 003236 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (837)
Q Consensus 509 v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~ 588 (837)
+.+|..++++.+|.... .......+ +|.+.|.+++.-.+|.+|- |+.|..|..||-. .+
T Consensus 260 viTgDS~G~i~Iw~~~~------------------~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~-y~ 318 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKGT------------------NRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDN-YR 318 (626)
T ss_pred EEeecCCceEEEEeCCC------------------ceEEeEee-ecCCceEEEEEecCccEee-cCccceEEecccc-cc
Confidence 46777788888884411 11122333 9999999999999997665 9999999999821 11
Q ss_pred EE-----------------------------------------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 589 VK-----------------------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 589 ~~-----------------------------------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
.+ .+..+|.+..+.++.+|+...++|++.|+.+++|+
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-- 396 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-- 396 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--
Confidence 00 01126888889999999999999999999999999
Q ss_pred CCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 628 ~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
..+ +........++.|++|+|.| .++.|...|...+.|+++...+........+++++|+|+|.+|++|+.|+.|+
T Consensus 397 ~~k--~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 397 DHK--LEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred CCc--eeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEE
Confidence 222 22223345789999999998 67789999999999999988777777788899999999999999999999999
Q ss_pred EEECCCC-eEEEEE-cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE-----------EEe----ecCCC
Q 003236 708 ILDVETQ-VCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI-----------HEL----SCTGN 769 (837)
Q Consensus 708 iwDl~s~-~~~~~l-~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i-----------~~~----~~~~~ 769 (837)
||.+... ...... +.+..+|+.+.|++|+++|.+-+ |-.|-.|..........+ .-| ..++.
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t 552 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGT 552 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCc
Confidence 9988754 222222 22458999999999999999998 889999954332211111 111 12445
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 770 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~----~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|..++-+.+.+.++++...|+|++|...-.... ...+|.+.|++++|..+..+|++.+.|..|..|+
T Consensus 553 ~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 553 DINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred hHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 5667777888888999999999999987544332 6779999999999999888888888999999996
No 125
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=7.2e-22 Score=217.46 Aligned_cols=276 Identities=22% Similarity=0.317 Sum_probs=210.0
Q ss_pred EEEcC---CCCEEEEEECCCcEEEEeCCCCeEE------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 561 CHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 561 l~fSp---dg~~Lasgs~Dg~I~VWd~~t~~~~------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
+.|++ ...+||.+.+||.|.++|....... .....|...|.++.|-|....|++++.|.++++||+.+.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 66665 3347999999999999998754332 44568999999999999878899999999999999998664
Q ss_pred e-eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee--e------------------EE--------ecC
Q 003236 632 S-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--G------------------VF--------KCQ 682 (837)
Q Consensus 632 ~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i--~------------------~~--------~~~ 682 (837)
. ...+.+|.+.|.+++|.|.+..+||+|+.||.|.|||++....- . .. ...
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 2 13488999999999999999999999999999999999743300 0 00 001
Q ss_pred CCeeE---EEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEE--------cCC---CCCEEEEEEcCCCCEEEEEe-CCe
Q 003236 683 SGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKL--------QGH---KNQVHSVCWNTSGEYLASVS-DEL 746 (837)
Q Consensus 683 ~~i~s---l~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l--------~~h---~~~V~sl~~spdg~~Lasgs-Dg~ 746 (837)
..|.+ +.+..|...|++++. |+.|+|||+++....... ..| ...+++++.+..|.+|++.. |+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 12333 556677788888777 999999999986544322 223 23577888888887776654 999
Q ss_pred EEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCC-
Q 003236 747 VRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVN- 821 (837)
Q Consensus 747 I~IwDl~s~~~~~~i~~~~~~~~--~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg- 821 (837)
|++|++.+... ..+..+.++.. -...-..+|++.+|++|+.|...++|.+.+.+.- .+.+|.-.|++++|.|..
T Consensus 295 Iy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~ 373 (720)
T KOG0321|consen 295 IYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT 373 (720)
T ss_pred EEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence 99999987543 33333333322 1233467999999999999999999999887643 677999999999998854
Q ss_pred CEEEEEECCCcEEEeC
Q 003236 822 GMVASASHDKCVKIWK 837 (837)
Q Consensus 822 ~~LaSgs~DG~I~IWd 837 (837)
.-+|+|++|..++||+
T Consensus 374 t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 374 TPVATCSDDFRVKIWR 389 (720)
T ss_pred CCceeeccCcceEEEe
Confidence 3577889999999996
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=2.8e-21 Score=207.03 Aligned_cols=236 Identities=19% Similarity=0.348 Sum_probs=204.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~ 632 (837)
..-|.+|.+.|||+.|++|++-.+|.|||+.... ....+....-.+++++.+||.+..++|+.||.|.|||+.+. ..
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TL 543 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-ee
Confidence 4569999999999999999999999999997543 33444444456888999999999999999999999999974 46
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
++.+.+|.+.+.||+++++|.. |.+|+-|.+|+.||++++..+......+.|.++.++|.+.++++|-..+.+.|....
T Consensus 544 VrqfqGhtDGascIdis~dGtk-lWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTK-LWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCce-eecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence 9999999999999999999875 459999999999999999988888888999999999999999999999999998876
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003236 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 791 (837)
Q Consensus 713 s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~ 791 (837)
.. ..+.+.-|++.|.++.|.+.|+++++.+ |+.+..|...-+ ..+...+ ....|.+|.++.|.++|++|+.|..
T Consensus 623 kp-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 623 KP-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred Cc-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeecc-ccCcceeeeeccCceEEEecCCCcc
Confidence 54 3445666999999999999999999988 999999998776 3443333 3578999999999999999999998
Q ss_pred EEEEEC
Q 003236 792 LELWNM 797 (837)
Q Consensus 792 I~IwDl 797 (837)
..||.+
T Consensus 698 ATVYeV 703 (705)
T KOG0639|consen 698 ATVYEV 703 (705)
T ss_pred eEEEEE
Confidence 888865
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.7e-21 Score=218.89 Aligned_cols=240 Identities=16% Similarity=0.256 Sum_probs=201.0
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 003236 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~ 674 (837)
.|+...+.|+|.|+|++|++|+.||.|++|+.......-.++..+...|.+++.... .|++|+.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCCC
Confidence 688889999999999999999999999999987663333444447788998887643 67799999999999998876
Q ss_pred eeeEE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003236 675 CAGVF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 752 (837)
Q Consensus 675 ~i~~~-~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 752 (837)
.-..+ +..-++.+++|+.+|+++++|+.|-.|++.++.+......+++|..+|.+|.|+|.+++||+.+ ||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 54322 2347899999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCCCceeEEEee----cC-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---EeccCCCCeeEEEEeCCCCEE
Q 003236 753 GSGSKGECIHELS----CT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMV 824 (837)
Q Consensus 753 ~s~~~~~~i~~~~----~~-~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~l~~h~~~V~sla~spdg~~L 824 (837)
.++.....+..+. .. ...+..++|+|++..+++.+.|+.|++|+..++... ....+...+.++.|+|+|+||
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 9874322221111 11 345677899999999999999999999999998866 333455569999999999999
Q ss_pred EEEECCCcEEEeC
Q 003236 825 ASASHDKCVKIWK 837 (837)
Q Consensus 825 aSgs~DG~I~IWd 837 (837)
|+++.||.|.|||
T Consensus 248 AAs~~~g~I~vWn 260 (933)
T KOG1274|consen 248 AASTLDGQILVWN 260 (933)
T ss_pred eeeccCCcEEEEe
Confidence 9999999999997
No 128
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.8e-20 Score=205.62 Aligned_cols=282 Identities=17% Similarity=0.227 Sum_probs=231.5
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-eEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVR 622 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~ 622 (837)
....+.+.--..+|+|++|+.+.+.||++-.||.|.||++... -+...+.++ ...|.+++|+ ++..|++.+.+|.|.
T Consensus 15 vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 15 VHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSIT 93 (691)
T ss_pred EEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEE
Confidence 3445566667788999999999999999999999999999864 344555555 4579999999 556788999999999
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILA 699 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g~~lla 699 (837)
-||+.+.+. ...+....+.|++++.+|.+. .++.|+.||.++++++..++....... .+.+.++.|+|++..++.
T Consensus 94 EwDl~~lk~-~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 94 EWDLHTLKQ-KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG 171 (691)
T ss_pred EEecccCce-eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe
Confidence 999998764 666777789999999999976 555777799999999988887765543 478999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEc-------C-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 700 AAIENYISILDVETQVCRLKLQ-------G-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~-------~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
|+.||.|++||..++..++... . ...-|.++.|-.++. |++|. .|+|.+||...+ ..+..+..|...
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~ad 247 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDAD 247 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhcc
Confidence 9999999999999987766221 1 233577788876655 55555 999999999888 778888999999
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--E---EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~--~---~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
|.+++..++++++++++.|+.|..|...+++. + ....|...|.+++..++ .|++|+.|+.+.|
T Consensus 248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 248 VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 99999999999999999999999888776643 2 45688899999999876 8999999988765
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=9.9e-21 Score=193.17 Aligned_cols=257 Identities=20% Similarity=0.321 Sum_probs=198.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC----CCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~----t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWD 625 (837)
.+|.+-|.|+.|.+.|+.+|+|+.|++|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4789999999999999999999999999999954 3566777889999999999976 389999999999999997
Q ss_pred cCCCC--------ceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 626 TENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 626 l~~~~--------~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
-.... ....++......|+++.|.|.. ...+++++.||.|+||+.-.--.+.......++..+.. |
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~-p---- 164 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID-P---- 164 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC-C----
Confidence 63111 1235566777899999999964 44678899999999998764333322222111111110 1
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC---CCEEEEEeCC------eEEEEEcCCCC-CceeEEEeec
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELSC 766 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd---g~~LasgsDg------~I~IwDl~s~~-~~~~i~~~~~ 766 (837)
...+..+..|+.|+|. ..+|++|+|. .++||...... +...+.++..
T Consensus 165 -----------------------p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 165 -----------------------PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred -----------------------cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 1125566778888874 4578888865 89999887654 5567778889
Q ss_pred CCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCCCc--------------------EE-EeccCCCCeeEEEEeCCC
Q 003236 767 TGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTVN 821 (837)
Q Consensus 767 ~~~~I~sv~fspdg----~~L~sgs~dg~I~IwDl~s~~--------------------~~-~l~~h~~~V~sla~spdg 821 (837)
+..+|++++|.|+- ..|++++.|| |+||.+.... .+ .+..|.+.|+.+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 99999999999963 5688999999 9999987311 11 467899999999999999
Q ss_pred CEEEEEECCCcEEEeC
Q 003236 822 GMVASASHDKCVKIWK 837 (837)
Q Consensus 822 ~~LaSgs~DG~I~IWd 837 (837)
..|++.++||.|++|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.6e-21 Score=205.32 Aligned_cols=277 Identities=15% Similarity=0.219 Sum_probs=223.5
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC-EEEEEECCC
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDK 577 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg 577 (837)
+..+.+...++.++++|+++++|..... .-..++.+.--..+|.+++|.|+|. .+++++...
T Consensus 218 sv~FHp~~plllvaG~d~~lrifqvDGk-----------------~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTLRIFQVDGK-----------------VNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK 280 (514)
T ss_pred EEEecCCCceEEEecCCCcEEEEEecCc-----------------cChhheeeeeccCccceeeecCCCceEEEecccce
Confidence 3344445578899999999999965432 2224556666678899999999999 899999999
Q ss_pred cEEEEeCCCCeEEE--EeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 578 KAVLWCTESFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 578 ~I~VWd~~t~~~~~--~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
.++.||+.+.+... .+.++. ..+.....++++++|+..+..|.|.|....++.. +..+. -.+.|..++|+.++..
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el-i~s~K-ieG~v~~~~fsSdsk~ 358 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL-ITSFK-IEGVVSDFTFSSDSKE 358 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh-hheee-eccEEeeEEEecCCcE
Confidence 99999998876543 333443 4577888999999999999999999999988664 44444 5678999999999876
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEecCCCe--eEEEEecCCCEEEEEEcCCeEEEEECCC------CeEEEEEcCCCCC
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQ 726 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i--~sl~~sp~g~~llags~dg~I~iwDl~s------~~~~~~l~~h~~~ 726 (837)
++++| .+|.|++||++...|++.+...+.+ ++++.++++.++++|+..|.|.|||.++ .+++..+..-...
T Consensus 359 l~~~~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 359 LLASG-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred EEEEc-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 66555 4889999999999999999887765 4677779999999999999999999654 4667777777789
Q ss_pred EEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 727 VHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
|+++.|++|..+|+.++ +..+++-.+.+. .....+.. .-+.++|++|+|.+.++++|...|.|.+|.+.
T Consensus 438 Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 438 ITSLQFNHDAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeCcchhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999999999999998 668999998776 33333333 34568999999999999999999999999874
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.7e-23 Score=228.68 Aligned_cols=239 Identities=26% Similarity=0.414 Sum_probs=216.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
+.+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.+|.|+++..+|++|+.+|+|++||+
T Consensus 20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence 34556789999999999888899999999999999999988888889999999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCe
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~ 705 (837)
+..+. ++++.+|...+.++.|+|-+. ++++|+.|+.+++||++...|.+.+..+ ..+.+++|+|+|.+++.++.|..
T Consensus 100 eeAk~-vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 100 EEAKI-VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhh-hhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 98664 889999999999999999976 5589999999999999988888888753 45788999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
++|||+..++....|..|+..|.++.|+|..-+++.|+ |++|++||+++. ..+.........|.+..|+|++..++
T Consensus 178 vki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeee
Confidence 99999999999999999999999999999999999999 999999999876 66666666778899999999999777
Q ss_pred EEEcCC
Q 003236 785 VIGCYE 790 (837)
Q Consensus 785 sgs~dg 790 (837)
+|....
T Consensus 255 ~G~q~s 260 (825)
T KOG0267|consen 255 SGEQIS 260 (825)
T ss_pred cCchhh
Confidence 776553
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=2e-19 Score=193.40 Aligned_cols=288 Identities=12% Similarity=0.153 Sum_probs=228.9
Q ss_pred cccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 003236 537 AEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (837)
Q Consensus 537 ~~~~~g~~~~~~~~l~~H~-~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg 615 (837)
|....+..++....++.+. .-|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+| +|
T Consensus 227 w~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SG 304 (626)
T KOG2106|consen 227 WTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SG 304 (626)
T ss_pred EEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ec
Confidence 4445555556666666554 5699999999984 7789999999999998888887777999999999999998755 59
Q ss_pred eCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC
Q 003236 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~ 695 (837)
+.|..|..||-.-.+..-..+....+.|..++-.. .. ++.|...+.|..=.+.++-.+..+.+......++.+|+.+
T Consensus 305 gKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~--~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~ 381 (626)
T KOG2106|consen 305 GKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGK--GD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN 381 (626)
T ss_pred CccceEEeccccccccccccCchhcCCeeEEecCC--Cc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence 99999999994332322233444557777776443 33 4466667778777888888888888888899999999999
Q ss_pred EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 696 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
.+++++.|+.+++|+ ..+++.+.. ...++.|+.|+|.| .++.|. .|...|.|.++. ..+..... ..+++++
T Consensus 382 q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~v 453 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSVV 453 (626)
T ss_pred heeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEEE
Confidence 999999999999999 444444443 45789999999999 888888 999999999874 44444444 8899999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcE-E-Ee-ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKT-L-TL-SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~-~-~l-~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|+|+|.+|++|+.|+.|+||-+..+.. + +. ..|..+|+.+.|++|+++|.+-+-|-.|..|+
T Consensus 454 ~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 454 RYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 9999999999999999999999865443 3 22 24458999999999999999999999999994
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.1e-23 Score=227.51 Aligned_cols=253 Identities=21% Similarity=0.366 Sum_probs=222.9
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
+.+++.+..+-.++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+..... +..+.+|..+|.|+
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-hheeeccCCcceee
Confidence 34455556666778888653 446888899998877889999999999999999987654 66799999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 725 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~ 725 (837)
.|++. ..+|++|+.+|+|++||++..+.++++.+ ...+.++.|+|.+.+++.++.|..+.+||.+..-|.+.+.+|..
T Consensus 77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence 99998 45888999999999999999998887765 45789999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-
Q 003236 726 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL- 803 (837)
Q Consensus 726 ~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~- 803 (837)
.|.++.|+|+|++++.++ |..++|||+..+ +.+.+|..|...+..+.|+|..-.++.|+.|++|++||+++.+.+
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 999999999999999999 799999999888 788899999999999999999999999999999999999988877
Q ss_pred EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 804 TLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 804 ~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
........|.+++|++++..+++|..+
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 455557889999999999999888654
No 134
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=8.1e-20 Score=206.65 Aligned_cols=276 Identities=19% Similarity=0.300 Sum_probs=223.8
Q ss_pred CCeEEEEEcCCC--CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 556 SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 556 ~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
+.|+++. +|+. +.++.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..++.|..+|+|.|+++..++. +
T Consensus 160 ~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dki-l 237 (910)
T KOG1539|consen 160 DFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKI-L 237 (910)
T ss_pred CceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcE-E
Confidence 3377764 5543 3588999999999999999999999999999999999999888999999999999999998764 6
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEE--
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISIL-- 709 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iw-- 709 (837)
..+....+.|++++|..||..++++++..|.+.+||++..+.+..... .+.+....|.+....+++++.|+.+++|
T Consensus 238 ~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 666644599999999999999999999999999999999888777663 4677788888877777777777765554
Q ss_pred ECCCCe--EE----------------------------------------------------------------------
Q 003236 710 DVETQV--CR---------------------------------------------------------------------- 717 (837)
Q Consensus 710 Dl~s~~--~~---------------------------------------------------------------------- 717 (837)
|...+. .+
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 411110 00
Q ss_pred ---------------------------------------EEEcCCC------CCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003236 718 ---------------------------------------LKLQGHK------NQVHSVCWNTSGEYLASVS-DELVRVWS 751 (837)
Q Consensus 718 ---------------------------------------~~l~~h~------~~V~sl~~spdg~~Lasgs-Dg~I~IwD 751 (837)
+.+ .+. ..+++++.++.|++.+.|. .|.|.+|+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe-cCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 000 011 3567888888999998888 88999999
Q ss_pred cCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--------------------------
Q 003236 752 IGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-------------------------- 802 (837)
Q Consensus 752 l~s~~~~~~i~~~---~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~-------------------------- 802 (837)
+.++ .....+ ..|..+|+.++...-++.+++++.+|.+.+||..+..+
T Consensus 477 mQSG---i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 477 MQSG---IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred cccC---eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 9988 334444 57899999999999999999999999999999865430
Q ss_pred ---------------E-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 803 ---------------L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 803 ---------------~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+ .+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 0 2456999999999999999999999999999998
No 135
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.6e-20 Score=192.16 Aligned_cols=234 Identities=18% Similarity=0.273 Sum_probs=191.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 675 (837)
..+.|.+|.|+|.+..|+++++||++++||+.... ++....|..++.+++|.++. -+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~~~~~plL~c~F~d~~--~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKFKHGAPLLDCAFADES--TIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhheecCCceeeeeccCCc--eEEEeccCceEEEEEecCCcc
Confidence 36789999999999999999999999999999763 45555689999999999753 456899999999999999998
Q ss_pred eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003236 676 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 676 i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s 754 (837)
...-.+..++.|+.+.+..+.+++|+.|+.|++||.+....+..+. ....|.++... ++.|++|. |..|.+||+++
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 8888889999999999999999999999999999999865555554 34478888764 55666655 99999999998
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-----cEEEeccCC---------CCeeEEEEeCC
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHD---------KLVSSLAASTV 820 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~-----~~~~l~~h~---------~~V~sla~spd 820 (837)
..... ...-......+.++++-|++.-+++++-||.|.+=.++.. +...+..|. -+|++|+|+|-
T Consensus 165 ~~~~~-q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 165 LDEPF-QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ccchh-hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 75422 1222334567899999998888999999997776555443 233555663 26999999999
Q ss_pred CCEEEEEECCCcEEEeC
Q 003236 821 NGMVASASHDKCVKIWK 837 (837)
Q Consensus 821 g~~LaSgs~DG~I~IWd 837 (837)
...||||+.||.|.+||
T Consensus 244 ~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWD 260 (323)
T ss_pred cceEEecCCCceEEEcc
Confidence 99999999999999997
No 136
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.2e-20 Score=200.02 Aligned_cols=258 Identities=13% Similarity=0.185 Sum_probs=204.1
Q ss_pred EECC-CcEEEEeCCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeeccccceEEEEEc
Q 003236 573 GGHD-KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (837)
Q Consensus 573 gs~D-g~I~VWd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs 649 (837)
++.| ..+.+||+.+|.....+++. ...-.++... .+.+++++.. ...|.+|.+....... .+.--.++|.+++-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3444 45999999999999888754 2111122211 2356666654 4579999988654322 344456889999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECC---------CCeEEEE
Q 003236 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRLK 719 (837)
Q Consensus 650 pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~---------s~~~~~~ 719 (837)
|+|. +++.|+..|.|++|.+.+|..+..+.. -..|+|+.|+.|+.+|++++.||.|.+|++- +-++++.
T Consensus 91 n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 91 NLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 9976 454666889999999999999988864 4579999999999999999999999999763 3467888
Q ss_pred EcCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 720 LQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 720 l~~h~~~V~sl~~spd--g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
+..|.-+|+++...+. ..+|++++ |.++++||+..+ ..+.++. ....+.+|+.+|.+..+++|+.+|.|.+.+
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeee
Confidence 9999999999988765 45788888 999999999988 4554443 367899999999999999999999999988
Q ss_pred CCCCc-----------------EEEeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 797 MTENK-----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 797 l~s~~-----------------~~~l~~h~~--~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.... ...+.+|.+ .|+|++++-||.+|++|+.||.|+|||
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 74432 125678888 999999999999999999999999997
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=4.3e-20 Score=205.23 Aligned_cols=345 Identities=16% Similarity=0.238 Sum_probs=252.6
Q ss_pred ccCCCCCceEEEEecCCCCCcccCCCccccCC---------------CeEEcccCCCceEEeecCCCCCCCCcccccccc
Q 003236 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMD---------------RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (837)
Q Consensus 475 ~~~~s~~~s~~~~~~~~~~~~~~~~~~l~~~~---------------~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~ 539 (837)
..+++.++++|.|.++...+......++..+. .++.+-+..+..+ +|..
T Consensus 282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h----------------lWkt 345 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH----------------LWKT 345 (764)
T ss_pred heecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE----------------EEec
Confidence 44567789999999988755444443333322 2222222333333 3332
Q ss_pred CCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC----CCeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 003236 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (837)
Q Consensus 540 ~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~----t~~~~~~l~~h~~~I~~l~fspdg~~Latg 615 (837)
.+...+.....+.||.+.|..|+|+|.|++|++.+.|-+-+||-.- +...+..-..|...++|++|-+....+++|
T Consensus 346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred cCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeec
Confidence 3334455666788999999999999999999999999999998643 123334445688899999999877788999
Q ss_pred eCCCeEEEEEcCC-------------------------------------------CC----------------------
Q 003236 616 SADRTVRVWDTEN-------------------------------------------PD---------------------- 630 (837)
Q Consensus 616 s~Dg~I~IWDl~~-------------------------------------------~~---------------------- 630 (837)
...+.+|+|+... +.
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 9999999997540 00
Q ss_pred ----------ceeEEeeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeeEEec-CCCeeEEEEecCC
Q 003236 631 ----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-QSGATQMRFQPRL 694 (837)
Q Consensus 631 ----------~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g 694 (837)
..+..+.||...|++++.+|+++ ++++++.. ..|++|+..+...+..+.. .-.|+.++|+|++
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg 584 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDG 584 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCC
Confidence 01234567999999999999976 67677543 4699999998887776654 4569999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCe----EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE--EeecC
Q 003236 695 GRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH--ELSCT 767 (837)
Q Consensus 695 ~~llags~dg~I~iwDl~s~~----~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~--~~~~~ 767 (837)
++|++++.|.++.+|...... .....+.|..-|.++.|+|++.++++++ |.+|+||....... +.+. ....+
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~ 663 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKF 663 (764)
T ss_pred cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhcc
Confidence 999999999999999875431 1233667999999999999999999999 99999999877631 2222 23346
Q ss_pred CCceEEEEEeCC-----CCEEEEEEcCCeEEEEECC------C-CcEE------EeccCCCCeeEEEEeCCC--------
Q 003236 768 GNKFHSCVFHPT-----FPSLLVIGCYETLELWNMT------E-NKTL------TLSAHDKLVSSLAASTVN-------- 821 (837)
Q Consensus 768 ~~~I~sv~fspd-----g~~L~sgs~dg~I~IwDl~------s-~~~~------~l~~h~~~V~sla~spdg-------- 821 (837)
...|+.++|.|- +..+++|-..|.|.+|... + +... ...+|...|+.+.|.|..
T Consensus 664 ~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~ 743 (764)
T KOG1063|consen 664 SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDK 743 (764)
T ss_pred CCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccccccccccc
Confidence 778899988763 2367788889999999865 1 1111 234677889999999752
Q ss_pred --CEEEEEECCCcEEEeC
Q 003236 822 --GMVASASHDKCVKIWK 837 (837)
Q Consensus 822 --~~LaSgs~DG~I~IWd 837 (837)
..|++|++|..++|++
T Consensus 744 ~~l~la~~g~D~~vri~n 761 (764)
T KOG1063|consen 744 EWLNLAVGGDDESVRIFN 761 (764)
T ss_pred ceeEEeeecccceeEEee
Confidence 2679999999999985
No 138
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.2e-20 Score=192.46 Aligned_cols=257 Identities=20% Similarity=0.310 Sum_probs=213.5
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEc
Q 003236 570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs 649 (837)
+++.-.++++. ...++.+.+|.+.|+.++.......+.+++.|.+.+||.++++. ++..+.+|.+.|++|+|+
T Consensus 127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-CLATYTGHTGSVNSIKFH 199 (481)
T ss_pred heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-ceeeecccccceeeEEec
Confidence 44444555532 24567788999999999998877799999999999999999977 489999999999999999
Q ss_pred CCCCeEEEEEeCCCcEEEEEC------CC--------Ce--------------------------eeeEEe-cCCCeeEE
Q 003236 650 PSKEDLLCSCDNNSEIRYWSI------NN--------GS--------------------------CAGVFK-CQSGATQM 688 (837)
Q Consensus 650 pdg~~llasgs~Dg~I~vwDl------~t--------~~--------------------------~i~~~~-~~~~i~sl 688 (837)
+.+. ++++++.|++-.||.. .. ++ ++..+. +...|.+.
T Consensus 200 ~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 200 NSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred cccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9865 7779999999999962 11 00 011111 12346677
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003236 689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 689 ~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
.|...+..+++++.|.+-.+||+++++.+..+.+|....+.++-+|..+++++.+ |.+.++||++.. ...+..|.+|
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGH 356 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGH 356 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--cceeeeeccc
Confidence 7888889999999999999999999999999999999999999999999999999 999999999843 3678889999
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 768 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~-~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
...|+++.|..+.+ +++|+.|.+|+|||+++.+. +.......+++.++++..+.+|+.--++..|+|||
T Consensus 357 tdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 357 TDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred ccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 99999999998876 88999999999999988764 35556678899999998888888888888899987
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=3.8e-20 Score=187.52 Aligned_cols=208 Identities=20% Similarity=0.332 Sum_probs=175.3
Q ss_pred ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC------c-----e---eEEeeccccceEEEEEcCCCCeEEEE
Q 003236 594 EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------Y-----S---LRTFTGHSTTVMSLDFHPSKEDLLCS 658 (837)
Q Consensus 594 ~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~------~-----~---~~~~~~h~~~V~sl~fspdg~~llas 658 (837)
..|.+.|+++...+ .|+++++|+.||.|.|||+.... . + .....+|...|.++.|.|-...+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 35889999999988 69999999999999999997533 0 0 11234688899999999988889999
Q ss_pred EeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 003236 659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 735 (837)
Q Consensus 659 gs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g---~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd 735 (837)
++.|.+++|||.++-.....|+.++.|.+-+++|-. -.|++|..+-.|++.|+.+|.+.+.+.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999999999999999999999999843 35667777889999999999999999999999999999998
Q ss_pred CCEE-EEEe-CCeEEEEEcCCCC------------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 736 GEYL-ASVS-DELVRVWSIGSGS------------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 736 g~~L-asgs-Dg~I~IwDl~s~~------------~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
.+++ ++|+ ||.|++||++.-. ....+..-..|.+.+..++|..++.++++++.|..+++|+..+|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 8765 4566 9999999998542 111222344567889999999999999999999999999998775
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=5.9e-20 Score=188.92 Aligned_cols=285 Identities=19% Similarity=0.336 Sum_probs=220.2
Q ss_pred EEecCCCCCeEEEEEcC-----CCCEEEEEECCCcEEEEeCCCCe---EEEEe--ccCCCCeEEEEEcCC----CCEEEE
Q 003236 549 QLIPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLAT 614 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSp-----dg~~Lasgs~Dg~I~VWd~~t~~---~~~~l--~~h~~~I~~l~fspd----g~~Lat 614 (837)
.....|+.+|..++|++ +-..+|+++. ..|.+|...... .+..+ ..|.+....++|+-+ ..+||.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 34468899999999985 2235666654 578888765433 22222 247788889999765 447899
Q ss_pred EeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec----CCCeeEEEE
Q 003236 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF 690 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----~~~i~sl~~ 690 (837)
++.-|.|+|.|+.+.. ....+.+|...|+.|.|+|+...++++++.|..|++|++.+..|+..|.. ...|.++.|
T Consensus 111 ~G~~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred ecceeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 9999999999999866 47889999999999999999999999999999999999999999999874 567999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCe------EE---------------------E-EEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 691 QPRLGRILAAAIENYISILDVETQV------CR---------------------L-KLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 691 sp~g~~llags~dg~I~iwDl~s~~------~~---------------------~-~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
+.++.+|++++.|..|++|++...+ +. . +-..|...|-|+.|- |+++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 9999999999999999999998321 10 0 112366677777775 5788887
Q ss_pred e-CCeEEEEEcCC-C----------CCceeEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEECCCCcEE---Ee
Q 003236 743 S-DELVRVWSIGS-G----------SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTL---TL 805 (837)
Q Consensus 743 s-Dg~I~IwDl~s-~----------~~~~~i~~~~~~~~~I~sv--~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~l 805 (837)
+ ++.|..|.... . .....+.++......|+-+ +|.+-.+.|+.|...|.|++||++..+.. ++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 7 89999998721 1 1112334444444555544 56677899999999999999999887653 22
Q ss_pred --ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 806 --SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 806 --~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
......|...+|+.|+.+|+..++|++|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 23356799999999999999999999999886
No 141
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=194.03 Aligned_cols=294 Identities=18% Similarity=0.260 Sum_probs=213.7
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEeCCC----CeEEEEeccCCCCeEEEEEcC-CCCEEEE
Q 003236 542 GFTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLAT 614 (837)
Q Consensus 542 g~~~~~~~~l~~H~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~I~~l~fsp-dg~~Lat 614 (837)
...+....+++-|.++|++++|+|.. +++|+|..-|.|-+||+.+ ...+..+..|..+|.++.|+| +...+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 34455667788899999999999954 5899999999999999942 334566778999999999999 4668999
Q ss_pred EeCCCeEEEEEcCCCCc-eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEEe-cCCCeeEEEEe
Q 003236 615 SSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQ 691 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~-~~~~i~sl~~s 691 (837)
.|+||+|++-|++.... .+.........+.++.|+.+...++ .++.=|...+||++++.. ...+. +...|.+++++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 99999999999987542 1222222445667788887766555 555566999999998664 33333 34589999999
Q ss_pred cCCC-EEEEEEcCCeEEEEECCCCe----EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-CCceeEEEe
Q 003236 692 PRLG-RILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHEL 764 (837)
Q Consensus 692 p~g~-~llags~dg~I~iwDl~s~~----~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~-~~~~~i~~~ 764 (837)
|-.. ++++++.|++++|||++.-. ++.....|...|.+..|||.+-.|++.+ |+.|+|||..-- .......++
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I 411 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI 411 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence 9655 47788889999999998632 2334456999999999999876677777 999999998411 111222222
Q ss_pred ec---CCC--ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCC-CCeeE-EEEeCCCC-EEEEEECCCcEEE
Q 003236 765 SC---TGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSS-LAASTVNG-MVASASHDKCVKI 835 (837)
Q Consensus 765 ~~---~~~--~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~-~~V~s-la~spdg~-~LaSgs~DG~I~I 835 (837)
.. ++. .....+|.|+..+|+++..-..|-|||-..++.+ .+.... ..|.+ ..|+|-+. +++-++..|.|+|
T Consensus 412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v 491 (498)
T KOG4328|consen 412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV 491 (498)
T ss_pred eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence 11 111 2345689999999999999889999999988865 433332 24444 47999887 4444556788988
Q ss_pred e
Q 003236 836 W 836 (837)
Q Consensus 836 W 836 (837)
|
T Consensus 492 f 492 (498)
T KOG4328|consen 492 F 492 (498)
T ss_pred E
Confidence 8
No 142
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=9.2e-20 Score=200.52 Aligned_cols=270 Identities=18% Similarity=0.283 Sum_probs=214.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.|..++|-|||.-|+.+. +..+.|||...|..+.++++|.+.|+|++|+.||+.+++|+.|+.|.||+-.-.. + ..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~-Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--I-LK 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--e-ee
Confidence 699999999999888775 4579999999999999999999999999999999999999999999999876433 2 23
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
..|.+.|.|+.|+|-.. .+++|+- ...-+|.... +.+...+....+.+++|..||.+++.|-.+|+|.|-+-.....
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcch-hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 45999999999999855 5667764 3567887764 3344444457789999999999999999999999986543322
Q ss_pred EEEE--cCCCCCEEEEEEcCCC-----CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 717 RLKL--QGHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 717 ~~~l--~~h~~~V~sl~~spdg-----~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
+..- .+..++|.+++|+|.. ..+++.. ..++.+|.+.. ..+..-...+....++.+.++|.++++|++
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGS 242 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccC
Confidence 2222 2467899999999853 3566666 66777777654 334333444556778999999999999999
Q ss_pred CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 789 YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 789 dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|+.+.+|..+.-.+-++...+..|+.++..|++.+++.|+.||+|-.|+
T Consensus 243 dk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 243 DKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 9999999755444446667788999999999999999999999998764
No 143
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=9.1e-21 Score=212.85 Aligned_cols=234 Identities=18% Similarity=0.347 Sum_probs=194.2
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEe
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd 583 (837)
.++++++.+..+.|.+|...-. ..-..+..|..|...|++++|++ ...+|++|+.||+|++||
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~----------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D 162 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKS----------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD 162 (839)
T ss_pred hhhhheeecCCCcEEEEecCcc----------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence 3467888888888888855432 11123557889999999999998 455899999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
+...+-..++.+..+.|.+|.|+| .+.+|+++.+.|.+.+||++....+...+..|.++|.|+.|+|+ ..+||+|+.|
T Consensus 163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRD 241 (839)
T KOG0269|consen 163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRD 241 (839)
T ss_pred eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCC
Confidence 999888888988999999999999 57889999999999999999988888999999999999999996 5588899999
Q ss_pred CcEEEEECCCCe--eeeEEecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcC-C
Q 003236 663 SEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-S 735 (837)
Q Consensus 663 g~I~vwDl~t~~--~i~~~~~~~~i~sl~~sp~g~~llags~---dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~sp-d 735 (837)
+.|+|||+.+.+ .+.++....++.++.|-|...+.++.+. |-.|+|||++.. .+..++..|...++.++|.. |
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d 321 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGD 321 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCC
Confidence 999999998654 4556666788999999998777655543 679999999876 56778889999999999965 4
Q ss_pred CCEEEEEe-CCeEEEEEcCCC
Q 003236 736 GEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 736 g~~Lasgs-Dg~I~IwDl~s~ 755 (837)
...+.+++ |+.|..-.+++.
T Consensus 322 ~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 322 RINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeeEeecCccHHHHhhhhcc
Confidence 55677777 887766655544
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=7.7e-20 Score=190.95 Aligned_cols=239 Identities=18% Similarity=0.359 Sum_probs=187.5
Q ss_pred cCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEeCC----------------CCeEEEEeccCCCCeEEEEEcCC-CCEE
Q 003236 552 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSPS-LSRL 612 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~----------------t~~~~~~l~~h~~~I~~l~fspd-g~~L 612 (837)
..|.+.|..+.-++-+ .+.|+-+..|.|.||++. ..+++.++.+|...=+.|+|+|- ...|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3677778888777744 466777888999999864 24567888899999999999993 3358
Q ss_pred EEEeCCCeEEEEEcCCCCcee--EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---eeeeEEecCCCeeE
Q 003236 613 ATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGATQ 687 (837)
Q Consensus 613 atgs~Dg~I~IWDl~~~~~~~--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---~~i~~~~~~~~i~s 687 (837)
++|..-+.|++|...++...+ ..+.+|+..|..|+|+|..+.+|++|+.||+|+|||++.+ .++.+..+.+.|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 888888999999999876544 5677899999999999999999999999999999999988 56666667889999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCC---CeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCce---
Q 003236 688 MRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGE--- 759 (837)
Q Consensus 688 l~~sp~g~~llags~dg~I~iwDl~s---~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~--- 759 (837)
|.|+.+...|++|+.||+++|||++. +.++..|+-|..+|++|.|+|.. ..|++++ |..|.|||+......+
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 99999988899999999999999985 57889999999999999999954 3444444 9999999997532200
Q ss_pred ------------eEEEeecCCCceEEEEEeCCCC-EEEEEEcCC
Q 003236 760 ------------CIHELSCTGNKFHSCVFHPTFP-SLLVIGCYE 790 (837)
Q Consensus 760 ------------~i~~~~~~~~~I~sv~fspdg~-~L~sgs~dg 790 (837)
.+..+.-....+..+.|++.-+ +|++.+.||
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 0111111234567788888754 455555565
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=185.12 Aligned_cols=267 Identities=18% Similarity=0.294 Sum_probs=207.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCC------------eEEEEec-cCCCCeEEEEEc-------CCCCEEEEEeC
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSSA 617 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~------------~~~~~l~-~h~~~I~~l~fs-------pdg~~Latgs~ 617 (837)
...+.|+|||..|++-+.|..+.+|++... +...+++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456899999999999999999999986421 0111111 234568888886 56789999999
Q ss_pred CCeEEEEEcCCCCceeEEeec--ccc---ceEEEEEcCCCCeEEEEEeCCCcEEEEEC-CCCeeeeEEe---c-----CC
Q 003236 618 DRTVRVWDTENPDYSLRTFTG--HST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVFK---C-----QS 683 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~--h~~---~V~sl~fspdg~~llasgs~Dg~I~vwDl-~t~~~i~~~~---~-----~~ 683 (837)
|.-|++||.-+++. ...+.+ |-. ...+++|+|||..++ ++....|++||+ +.|.....+. . .+
T Consensus 132 ~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999998874 333322 333 356899999999776 455789999999 5554322221 1 34
Q ss_pred CeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee
Q 003236 684 GATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC 760 (837)
Q Consensus 684 ~i~sl~~sp~g~-~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~ 760 (837)
-+.|++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|. |..|.+||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 578999999654 788888889999999999999999999999999999999999999998 8899999998753 44
Q ss_pred EEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CcEE-EeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 761 IHELSCTGN---KFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 761 i~~~~~~~~---~I~sv~fspdg~~L~sgs~dg~I~IwDl~s-~~~~-~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
+..+..|.. .-.-+...|++.+|++|+.+|.|++||+++ +..+ .+..|...|+.++++|--.++|+++.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 445544433 333456678999999999999999999988 5534 67789999999999999888888764
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.84 E-value=1.1e-19 Score=200.45 Aligned_cols=282 Identities=15% Similarity=0.213 Sum_probs=208.0
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
...+.+++.+..|+.|.+|....-.. . ..-..+....+|.+.|..+.|-|....|++++.|.++++|
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~f---------r----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVF---------R----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhc---------c----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 34567889999999999985432210 0 0011234566899999999999966689999999999999
Q ss_pred eCCCCeEEEE--eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc--------------------------ee
Q 003236 583 CTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--------------------------SL 633 (837)
Q Consensus 583 d~~t~~~~~~--l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~--------------------------~~ 633 (837)
|++..+++.. +.+|...|.++||.+. ...|++|+.||.|.|||+..... .+
T Consensus 128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 9999888866 8899999999999995 56789999999999999874320 01
Q ss_pred EEeeccccceEE---EEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeEEe------c------CCCeeEEEEecCCCEE
Q 003236 634 RTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFK------C------QSGATQMRFQPRLGRI 697 (837)
Q Consensus 634 ~~~~~h~~~V~s---l~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~------~------~~~i~sl~~sp~g~~l 697 (837)
.....+...|.+ +.+..|.. .|++++. |+.|+|||+++..+..... . ..++.++.....|.++
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 122234444544 44555645 4556555 9999999999765443221 1 2357788888889999
Q ss_pred EEEEcCCeEEEEECCCC--eEEEEEcCCCCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 698 LAAAIENYISILDVETQ--VCRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 698 lags~dg~I~iwDl~s~--~~~~~l~~h~~~--V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
++.|.|+.|++|++.+. .++..+.++... ...-..+||+.+|++|+ |...++|.+.+.. .....+.+|...|+
T Consensus 287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt 364 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLGHTREVT 364 (720)
T ss_pred EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhCcceEEE
Confidence 99999999999999864 445555544321 12235689999999999 9999999998764 45556778899999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCC
Q 003236 773 SCVFHPTF-PSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 773 sv~fspdg-~~L~sgs~dg~I~IwDl~s~ 800 (837)
+++|.|.. .-+++++.|..++||++..+
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 99998753 33777788899999998654
No 147
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=2.8e-17 Score=181.46 Aligned_cols=313 Identities=27% Similarity=0.431 Sum_probs=236.7
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCC-CCeEEEEE-cCCCC-EEEEEEC-CC
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-DK 577 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~-~~V~sl~f-Spdg~-~Lasgs~-Dg 577 (837)
+......+..++.|+.+.+|...... ..+..+..+. ..+..+.+ ++++. +++..+. |+
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCc
Confidence 34455677777788889998665442 2234444433 36777777 88887 5555444 99
Q ss_pred cEEEEeCCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeE
Q 003236 578 KAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 578 ~I~VWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
.+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|++.... .+..+.+|...|.+++|+|++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 213 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLL 213 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceE
Confidence 999999998 8888889999999999999999998998886 9999999999744 477788899999999999988756
Q ss_pred EEEEeCCCcEEEEECCCCeeee-EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEc
Q 003236 656 LCSCDNNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t~~~i~-~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~-~~~l~~h~~~V~sl~~s 733 (837)
+++++.|+.|++||...+..+. .+..+.......|++++..+++++.++.+++||++.... +..+..|...|.++.|+
T Consensus 214 ~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred EEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 6666899999999999777777 454433332227999988888999999999999987654 44446788999999999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEE-EcCCeEEEEECCCCcEEEeccCC
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVI-GCYETLELWNMTENKTLTLSAHD 809 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~--~~~~~~I~sv~fspdg~~L~sg-s~dg~I~IwDl~s~~~~~l~~h~ 809 (837)
|++..+++++ |+.+++||+.+.. ..... ..|...+..+.|.+++..++.+ ..|+.+.+|++............
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 370 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETGK---LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCCc---eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence 9888888877 8889999888763 33333 3666678888884332556666 57788999999888733332333
Q ss_pred CCeeEEEEeCCCCEEEE-EECCCcEEEeC
Q 003236 810 KLVSSLAASTVNGMVAS-ASHDKCVKIWK 837 (837)
Q Consensus 810 ~~V~sla~spdg~~LaS-gs~DG~I~IWd 837 (837)
..+..+.+.+ ...++. +..++.+.+|+
T Consensus 371 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 398 (466)
T COG2319 371 SNVLSVSFSP-DGRVVSSGSTDGTVRLWD 398 (466)
T ss_pred ceEEEEEECC-CCCEEEEecCCCceEEEe
Confidence 3388999988 544444 68899999996
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.1e-18 Score=191.95 Aligned_cols=272 Identities=14% Similarity=0.178 Sum_probs=219.4
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCC-CCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H-~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
.++.+|.+-.|++|++|..... +-...++.++ .+.|.+++|++. ..|++.+.+|.|.-||
T Consensus 36 kS~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 36 KSNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWD 96 (691)
T ss_pred cCCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEe
Confidence 3456899999999999965442 1223445544 567999999954 4677788899999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee-EEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~-~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
+.+++.+..+....+.|++++.+|.+..++.|++||.+..++...+.... +.+...++.|.+++|+|++.. +++|+.|
T Consensus 97 l~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~-i~~Gs~D 175 (691)
T KOG2048|consen 97 LHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK-IAGGSID 175 (691)
T ss_pred cccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccE-EEecccC
Confidence 99999999999999999999999999999999999988888887765433 334445689999999999764 5589999
Q ss_pred CcEEEEECCCCeeeeEEec-----CC----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc
Q 003236 663 SEIRYWSINNGSCAGVFKC-----QS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~-----~~----~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s 733 (837)
|.|++||..++..+..... .. -|.++.|. ..+.|++|...|.|.+||...+..+..+..|...|.|++..
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA 254 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence 9999999999887773321 22 14566666 44789999999999999999999999999999999999999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
+++.++++++ |+.|.-|...+... .........|...+.+++..++ .|++|+.|..+.+-....
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9999999888 99988888776543 2233445678889999999888 799999999888876554
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-19 Score=194.68 Aligned_cols=258 Identities=18% Similarity=0.235 Sum_probs=200.5
Q ss_pred eEEEEEcCCCCE-EEEEECCCcEEEEeCCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 558 VESCHFSPDGKL-LATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 558 V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
|.+++|+....+ +++.+.|..|++|.-.. ++....-....+.-.|++......|+++|+..+.|+|||+.. +.+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhh
Confidence 899999976642 33445788999996332 222211111222334454444558999999999999999994 66688
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC--CeeEEEEecCCCEEE-EEEcCCeEEEEEC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLGRIL-AAAIENYISILDV 711 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i~sl~~sp~g~~ll-ags~dg~I~iwDl 711 (837)
.+.+|...|+++.++..+ .+|++++..|.|.|..+.++.....|.++. .+.-+.|++..++++ +++.+|.|.+||+
T Consensus 116 ~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 999999999999999774 477799999999999999998888888753 366899999877755 5667799999999
Q ss_pred CCCeEEEEE-cCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 712 ETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 712 ~s~~~~~~l-~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
....+++.+ ..|..+...|||+|... +|++.+ |..|.+||++......++. -..+...++|.++|.+|++|..
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEeecC
Confidence 988777655 45999999999999765 555556 9999999999764333332 3678899999999999999999
Q ss_pred CCeEEEEECCCCcE-E-EeccCCCCeeEEEEeCCC
Q 003236 789 YETLELWNMTENKT-L-TLSAHDKLVSSLAASTVN 821 (837)
Q Consensus 789 dg~I~IwDl~s~~~-~-~l~~h~~~V~sla~spdg 821 (837)
.|.|..||++..+. + .+.+|...|++|+|-+..
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999987653 3 677999999999998764
No 150
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=4.1e-17 Score=180.15 Aligned_cols=284 Identities=29% Similarity=0.466 Sum_probs=227.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 623 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~I 623 (837)
.....+..|...|.+++|+|++.++++++. |+.+++|++..+..+..+..|...|.+++|+|++. .+++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 456778899999999999999999988886 99999999999889999999999999999999988 5555599999999
Q ss_pred EEcCCCCceeE-EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEE-ecCCCeeEEEEecCCCEEEEE
Q 003236 624 WDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF-KCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 624 WDl~~~~~~~~-~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~-~~~~~i~sl~~sp~g~~llag 700 (837)
||...+.. +. .+.+|...+ ...|++++ .++++++.|+.+++|++..... +..+ .+...+.++.|.|++..++++
T Consensus 226 wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 226 WDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 98885443 44 688888775 44899998 4666899999999999987664 3333 335779999999988888888
Q ss_pred EcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 701 AIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spdg~~Lasg-s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
+.|+.+.+||........... .|...+..+.|.+++..++.+ . |+.+.+|++.... ....... ...+..+.+
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~ 378 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEG-HSNVLSVSF 378 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecC-CceEEEEEE
Confidence 888889999999887666665 788889999994333566655 4 8889999998763 2222222 222888888
Q ss_pred eCCCCEEEE-EEcCCeEEEEECCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 777 HPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 777 spdg~~L~s-gs~dg~I~IwDl~s~~~~~l~~h~-~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+ ...++. +..++.+.+|+............. ..+..+.+++++.++++++.++.+++|+
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 88 533443 577889999999998887555444 8899999999999999999999999996
No 151
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=6e-19 Score=186.12 Aligned_cols=296 Identities=19% Similarity=0.273 Sum_probs=208.9
Q ss_pred eEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--
Q 003236 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-- 585 (837)
Q Consensus 508 ~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-- 585 (837)
++++|+.|..|++|......... .+..+.....|..|...|++|.|+|+|++||+|+.+|.|.+|-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 88999999999999665543321 114566678899999999999999999999999999999999644
Q ss_pred ------C--------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCC
Q 003236 586 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (837)
Q Consensus 586 ------t--------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspd 651 (837)
+ ....+++.+|...|+.++|+|++.++++++.|..+++||+..+.. ...+..|...|..++|.|-
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchh
Confidence 2 345577889999999999999999999999999999999998764 8888999999999999998
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEE
Q 003236 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 731 (837)
Q Consensus 652 g~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~ 731 (837)
+. ++++-+.|...+.+++.....+..... .....-.+.+. .....++|.-++. ..-...++
T Consensus 177 ~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~-~~m~~~~~~~~--------e~~s~rLfhDeTl---------ksFFrRls 237 (434)
T KOG1009|consen 177 NQ-YVASKSSDRHPEGFSAKLKQVIKRHGL-DIMPAKAFNER--------EGKSTRLFHDETL---------KSFFRRLS 237 (434)
T ss_pred hh-hhhhhccCcccceeeeeeeeeeeeeee-eEeeecccCCC--------CcceeeeeecCch---------hhhhhhcc
Confidence 66 555777777677776654443333221 00000000000 1112333322222 12345678
Q ss_pred EcCCCCEEEEEe-----CC-----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-----------------CCCEEE
Q 003236 732 WNTSGEYLASVS-----DE-----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-----------------TFPSLL 784 (837)
Q Consensus 732 ~spdg~~Lasgs-----Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp-----------------dg~~L~ 784 (837)
|+|+|.+|++.. ++ ..++|+-...+ .++..+.+.......+.|+| -.+.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~--rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf 315 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK--RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF 315 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeecccccc--CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence 889998887643 23 23555543222 34444444444444444443 123466
Q ss_pred EEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 785 VIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
+....+.|+|||.....++ .-.-|-..|+.++|++||.+|+..+.||.+.+
T Consensus 316 aiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 316 AIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred EEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 6667778999999998777 33468899999999999999999999997653
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.9e-19 Score=191.75 Aligned_cols=236 Identities=19% Similarity=0.363 Sum_probs=186.4
Q ss_pred CCCEEEEEECCCcEEEEeCCCCe---EEEE------------------eccCCCCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 003236 566 DGKLLATGGHDKKAVLWCTESFT---VKST------------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~---~~~~------------------l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~I 623 (837)
-|+|+|.|+.|..|.|||+.-.. +..+ -.+|++.|.++.|+.+ ...||+||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36799999999999999975211 1111 2369999999999875 568999999999999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecCCC-EEEEEE
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLG-RILAAA 701 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~sl~~sp~g~-~llags 701 (837)
||+.+++. ..++..|...|.++.|+|....++++|+.|++|.+.|.+. ...-..++..+.|..++|.+... .++++.
T Consensus 271 WD~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99999774 7788889999999999999999999999999999999994 34445666778999999999655 466777
Q ss_pred cCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 702 IENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 702 ~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
.||.|+-+|+|.. +++.++..|...|.+|++++.- .++++++ |+.|++|++..... ..+......-+...|.++.|
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCC
Confidence 8899999999986 9999999999999999998864 4566666 99999999976532 22222222234467778888
Q ss_pred CCCEE-EEEEcCCeEEEEECCCCcEE
Q 003236 779 TFPSL-LVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 779 dg~~L-~sgs~dg~I~IwDl~s~~~~ 803 (837)
+-.++ ++|+..+.++|||+.+...+
T Consensus 429 ~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 429 DVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcceEEEecCccceEEEeecccChhH
Confidence 77654 45555667999999877654
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.2e-20 Score=217.06 Aligned_cols=243 Identities=19% Similarity=0.349 Sum_probs=202.2
Q ss_pred CCeEEEEEcCCCCE----EEEEECCCcEEEEeCCCC------eEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEE
Q 003236 556 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVW 624 (837)
Q Consensus 556 ~~V~sl~fSpdg~~----Lasgs~Dg~I~VWd~~t~------~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IW 624 (837)
.+.+.++|.+.|.. ||.|..||.|.+||.... ..+.++..|++.|..+.|++. +++||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45678999886655 899999999999997652 334566789999999999996 4599999999999999
Q ss_pred EcCCCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC---eeEEEEecCCCE-EEE
Q 003236 625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG---ATQMRFQPRLGR-ILA 699 (837)
Q Consensus 625 Dl~~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~---i~sl~~sp~g~~-lla 699 (837)
|+.+.+.+... .....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+..... +..+.|+|+... +++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99986543333 2224578999999988889999999999999999999887777765444 788999998754 555
Q ss_pred EEcCC---eEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 700 AAIEN---YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 700 gs~dg---~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
++.|. .|.+||+|.. .++.++.+|...|.++.|++.+ .+|++++ |+.|.+|+..++ +.+..+...++.+..
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD 301 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence 55543 7999999865 6778888999999999999976 7777777 999999999998 888899888999999
Q ss_pred EEEeCCCC-EEEEEEcCCeEEEEECCCCc
Q 003236 774 CVFHPTFP-SLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 774 v~fspdg~-~L~sgs~dg~I~IwDl~s~~ 801 (837)
+.|.|... .|++++.||.|.||.+.+..
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999887 67788889999999987665
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.8e-19 Score=181.83 Aligned_cols=273 Identities=15% Similarity=0.262 Sum_probs=205.7
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.....+++.|+.|+.|.+|+... +..-+.+.+|..+|+|++||+||++|+|++.|..|.+
T Consensus 31 Fs~~G~~lAvGc~nG~vvI~D~~T-------------------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 31 FSRWGDYLAVGCANGRVVIYDFDT-------------------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred eccCcceeeeeccCCcEEEEEccc-------------------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 344557999999999999994432 2334667899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEeec---cccceEEEEEcCCCCeEEE
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~---h~~~V~sl~fspdg~~lla 657 (837)
||+..+.++..+. ...+|+.+.|+|.. +.++++-.+..-.+-++..+...+..... ......+..|++.|+ +++
T Consensus 92 wDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIi 169 (405)
T KOG1273|consen 92 WDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YII 169 (405)
T ss_pred EeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEE
Confidence 9999999998886 77899999999943 33333334444566666643321111111 111223345777776 555
Q ss_pred EEeCCCcEEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-------eE--EEEEcC--CC
Q 003236 658 SCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVETQ-------VC--RLKLQG--HK 724 (837)
Q Consensus 658 sgs~Dg~I~vwDl~t~~~i~~~~~~--~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-------~~--~~~l~~--h~ 724 (837)
+|...|.+.++|..+-+++..++.. ..|..+.++..+..|+.-+.|..|+.|+++.- ++ ...+.. ..
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 8888999999999999999888764 46889999999999999999999999998731 11 111111 12
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 725 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~-~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
..-.+++|+.+|.|+++++ -..++||.-..| ..++.+.+.. .....+.|+|-...|++. ..|.|++|....
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred hhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 2346789999999999988 558999999888 6777777766 667889999998877777 778999998643
No 155
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.1e-20 Score=218.64 Aligned_cols=274 Identities=20% Similarity=0.301 Sum_probs=216.9
Q ss_pred EEEEcCCCC-EEEEEE----------CCCcEEEEeCCC--C----eEEEEeccCCCCeEEEEEcCCCCE----EEEEeCC
Q 003236 560 SCHFSPDGK-LLATGG----------HDKKAVLWCTES--F----TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD 618 (837)
Q Consensus 560 sl~fSpdg~-~Lasgs----------~Dg~I~VWd~~t--~----~~~~~l~~h~~~I~~l~fspdg~~----Latgs~D 618 (837)
.++|+|++. ++|+|. .+.++.||.+.. . +.+..+. -....++++|.+.+.. |+.|.+|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 478999887 566553 245666665432 1 2233332 3457889999987665 8899999
Q ss_pred CeEEEEEcCCC-----CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEE
Q 003236 619 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRF 690 (837)
Q Consensus 619 g~I~IWDl~~~-----~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~ 690 (837)
|.|.+||...- ...+..+..|.+.|..++|++...+++++|+.||.|.|||+++-+.-.... ..+.|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998752 234567788999999999999999999999999999999998755444332 3567999999
Q ss_pred ecCCCEEE-EEEcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEcCCCC-EEEEEe--CC--eEEEEEcCCCCCceeEE
Q 003236 691 QPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGE-YLASVS--DE--LVRVWSIGSGSKGECIH 762 (837)
Q Consensus 691 sp~g~~ll-ags~dg~I~iwDl~s~~~~~~l~~h~~--~V~sl~~spdg~-~Lasgs--Dg--~I~IwDl~s~~~~~~i~ 762 (837)
+..-.+|+ +++.+|.+.|||++..+.+..+..+.. .+..|.|+|++. .|++++ |+ .|.+||+|... ..+.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 98766655 555678999999999988888876655 467899999864 455555 33 89999998764 5677
Q ss_pred EeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 003236 763 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW 836 (837)
Q Consensus 763 ~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~-~LaSgs~DG~I~IW 836 (837)
++.+|...|.++.|++.+ .++++++.|+.|.+|+.++++.+ .+......+..+.|+|... .+++++-||.|-||
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 788999999999999977 88899999999999999999998 6667788999999999775 88889999999987
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=2.4e-19 Score=191.38 Aligned_cols=256 Identities=16% Similarity=0.247 Sum_probs=202.7
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEcC---CCCceeEEeeccccceEEEEEcCCCCeEE
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTE---NPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg--~~Latgs~Dg~I~IWDl~---~~~~~~~~~~~h~~~V~sl~fspdg~~ll 656 (837)
+|+.+......++.+.++|++++|+|.. +++++|+..|.|-+||+. .....+..+..|..+|.+|.|+|.+...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4444555556677788999999999953 688999999999999995 22334677888999999999999988889
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEE
Q 003236 657 CSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW 732 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~-~~~l~~h~~~V~sl~~ 732 (837)
++.+.||+|++-|++.......+.. ...+..+.|+.+...++++..-|.+.+||++++.. ...+.-|...|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 9999999999999997655444443 23467788888888899998888999999998744 6667779999999999
Q ss_pred cCCC-CEEEEEe-CCeEEEEEcCCCCCce-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC----CCcEEEe
Q 003236 733 NTSG-EYLASVS-DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT----ENKTLTL 805 (837)
Q Consensus 733 spdg-~~Lasgs-Dg~I~IwDl~s~~~~~-~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~----s~~~~~l 805 (837)
+|-. .+|++++ |++++|||++.-.... ++.....|...|.++.|||.+..|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 9965 5677788 9999999998754333 344555688999999999999889999999999999984 2233333
Q ss_pred ccCCC------CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 806 SAHDK------LVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 806 ~~h~~------~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..|.. ......|.|+..+|++|..-..|-|+|
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 33432 234568999999999998888888775
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=1.2e-18 Score=191.08 Aligned_cols=114 Identities=24% Similarity=0.405 Sum_probs=98.6
Q ss_pred CCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE
Q 003236 724 KNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWN 796 (837)
Q Consensus 724 ~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwD 796 (837)
...|+.+.|+| |...|+++. ||.|++|.+..+.. ...-..+..|...|+++.|+|-. +.|++++.|-+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 45789999999 556777777 99999999986543 23455678899999999999954 6788899999999999
Q ss_pred CCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 797 MTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 797 l~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.+.+.. .+.+|.+.|.+++|+|||+.+|+.+.||+|++|+
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9998876 8999999999999999999999999999999985
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.9e-19 Score=193.84 Aligned_cols=243 Identities=19% Similarity=0.262 Sum_probs=199.2
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003236 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (837)
Q Consensus 589 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vw 668 (837)
+...+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.||+|+|.+...+++...+..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 4456789999999999999999999999999999999999875 55544 356899999999876544444444444444
Q ss_pred ECCCC--------------------------------------eeeeEEecCCCeeEEEEecCCCEEEEEEcC---CeEE
Q 003236 669 SINNG--------------------------------------SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYIS 707 (837)
Q Consensus 669 Dl~t~--------------------------------------~~i~~~~~~~~i~sl~~sp~g~~llags~d---g~I~ 707 (837)
+..-| ....++.+...|..+.|+.+|.+|++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 33211 012345566778999999999999998775 4799
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs 787 (837)
|+++.......-|....+.|.++.|+|...+|++++-..|+|||+... ..+..+......|.+++++|.|..|++++
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence 999988877767766778899999999999999999999999999875 55666666677899999999999999999
Q ss_pred cCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 788 CYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 788 ~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.|+.+..||+.-.... ++..|...|++|+|++.-.++++|++||++.||
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 9999999998765333 788999999999999999999999999999886
No 159
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.5e-18 Score=177.72 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=183.3
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc----eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 591 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~----~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
..+++|.+.|++++|+.||++|+|++.|++|+||++++-.. +++.-. .-+..+.+.|.||-..+++++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 35789999999999999999999999999999999986321 111111 1235678999999999999998888999
Q ss_pred EEECCCC---eeeeEEe----------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc
Q 003236 667 YWSINNG---SCAGVFK----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 667 vwDl~t~---~~i~~~~----------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s 733 (837)
+|.+... .....+. +.-.+..+-+...+.+|++++.|..|.+||++ |..+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 9987532 2111111 12235566667778899999999999999999 88887777666677788999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCC-----CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN------- 800 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~-----~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~------- 800 (837)
|+|++|++++ .-.|+||.+--.+ ....+..+++|...|..++|+++...+++.+.||+++|||.+-.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999998 7789999874322 12345678899999999999999999999999999999997422
Q ss_pred cEE-----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 801 KTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 801 ~~~-----~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+.+ .+.+..+....++.+|.|+.||.+. ...|++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 122 1222334455899999999888653 2345544
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=9.2e-19 Score=182.95 Aligned_cols=241 Identities=22% Similarity=0.339 Sum_probs=189.7
Q ss_pred ccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCC---------------CCceeEEeeccccceEEEEEcCCCCeEE
Q 003236 594 EEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 594 ~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~---------------~~~~~~~~~~h~~~V~sl~fspdg~~ll 656 (837)
..|.+.|+.+.-.+- ..+.++-+..|.|.|||+.. ...++.++.+|...=+.|+|+|-....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 457788888877764 44566667789999999862 1235678889999999999999766667
Q ss_pred EEEeCCCcEEEEECCCCeeee----EEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEE
Q 003236 657 CSCDNNSEIRYWSINNGSCAG----VFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 728 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~~i~----~~~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~---~~~~~l~~h~~~V~ 728 (837)
++|..-+.|++|...++.-.. ...+...|..++|+|.. +.|++|+.|++|+|||++.+ .++.+ +.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 788888899999998865322 22245678899999965 55777888999999999987 34443 78999999
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE----
Q 003236 729 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT---- 802 (837)
Q Consensus 729 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~---- 802 (837)
.|.|+.+-.+|++|+ ||+++|||++..+...++..++.|..+|+++.|+|.. ..|++++.|..|.|||+.-..-
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999 9999999999987778999999999999999999964 5678888899999999853221
Q ss_pred -------------EEeccC--CCCeeEEEEeCCC-CEEEEEECCCcEEEe
Q 003236 803 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKCVKIW 836 (837)
Q Consensus 803 -------------~~l~~h--~~~V~sla~spdg-~~LaSgs~DG~I~IW 836 (837)
--+.-| ...|..+.|++.- .+|++.+.|| +.||
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 022334 4568889999854 5889999998 4454
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=2e-18 Score=185.23 Aligned_cols=220 Identities=17% Similarity=0.257 Sum_probs=186.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.-+|++......|+++|+..++|+|||+....+.+.+++|...|+++.++....|||+++..|.|.|..+.++.. ...+
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f 159 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTF 159 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccce
Confidence 345665555568999999999999999998778888999999999999999999999999999999999998654 3344
Q ss_pred ecc-ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECC
Q 003236 637 TGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL-GRILAAAIENYISILDVE 712 (837)
Q Consensus 637 ~~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~ 712 (837)
... ...|.-+.|++....+|.+++.+|.|.+||+.....+..+. +..+...|+|+|.. ..|++.+.|..|++||.+
T Consensus 160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 333 45566899999999999999999999999999877666554 45678889999965 456778899999999999
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 713 s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
..+....+. ...+...++|.++|.+|++|+ .|.|..||++... .++..+..|...|++++|-+.-
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 877766665 567899999999999999999 9999999999764 6788888899999999998764
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.6e-18 Score=184.77 Aligned_cols=252 Identities=19% Similarity=0.274 Sum_probs=186.5
Q ss_pred ccCCCeEEcccCCCceEEeecC--CCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSP--DDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKA 579 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~--~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I 579 (837)
.+..+++|.|.+|..|.+|... +...+.-.++....-.+...-+.-..-.+|++.|.+++|+..- ..||+||.|.+|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 5567899999999999999442 2222222222111111111111112234799999999998854 479999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEE
Q 003236 580 VLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llas 658 (837)
++||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|.+.....-..+ ...+.|..++|.|.....+++
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEE
Confidence 9999999999999999999999999999 47899999999999999999644322222 245789999999999989989
Q ss_pred EeCCCcEEEEECCCC-eeeeEEec-CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE--EEEEcCCCCCEEEEEEc
Q 003236 659 CDNNSEIRYWSINNG-SCAGVFKC-QSGATQMRFQPRL-GRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 659 gs~Dg~I~vwDl~t~-~~i~~~~~-~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~--~~~l~~h~~~V~sl~~s 733 (837)
+..||+|+-+|++.. +++..+.. ..+|.+++++... +.+++++.|+.|++|++..... +..-.-.-+...|.++.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 999999999999975 88888774 6789999998854 4577888899999999875433 22111112346677888
Q ss_pred CCCCE-EEEEe-CCeEEEEEcCCC
Q 003236 734 TSGEY-LASVS-DELVRVWSIGSG 755 (837)
Q Consensus 734 pdg~~-Lasgs-Dg~I~IwDl~s~ 755 (837)
|+-.+ ++.|+ .+.++|||+.+.
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCcceEEEecCccceEEEeecccC
Confidence 87654 44455 668999999876
No 163
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=5.7e-19 Score=176.97 Aligned_cols=285 Identities=19% Similarity=0.202 Sum_probs=203.2
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
++.++++|.+.|+|+.|-.+++ |.+|...|.|++|++.+.+....++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 4677889999999999998875 8889999999999999988888887 67889999999887 5688889999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCC-----C---eEEEEEeCCC-cEEEEECCCCeeeeEEec-----CCCeeEEEEe
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSK-----E---DLLCSCDNNS-EIRYWSINNGSCAGVFKC-----QSGATQMRFQ 691 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg-----~---~llasgs~Dg-~I~vwDl~t~~~i~~~~~-----~~~i~sl~~s 691 (837)
+..... ...|.-.++++.|.+.. . .+++.-+... .+.+-|......+..... .+.+.|..+.
T Consensus 84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 986432 22244445555555321 1 1111111000 111122211111111111 2335555533
Q ss_pred c-CCC--EEEEEEcCCeEEEEECCCCeE----------EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003236 692 P-RLG--RILAAAIENYISILDVETQVC----------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 757 (837)
Q Consensus 692 p-~g~--~llags~dg~I~iwDl~s~~~----------~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~ 757 (837)
. .+. .+++|.++|.|.+||+.++.. ......|..+|.++.|.+.-..=++++ +..+..|++.....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 2 222 355667789999999998733 334456899999999987555445555 77888998875421
Q ss_pred -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 758 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 758 -~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
...-.++......+..+.+-||++.+++++.|+.|+||+.++...+ .+..|.+.|++++|+|+..++|+++.|++|.+
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL 319 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL 319 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence 1222233344567888999999999999999999999999999988 77889999999999999999999999999999
Q ss_pred eC
Q 003236 836 WK 837 (837)
Q Consensus 836 Wd 837 (837)
|+
T Consensus 320 Wk 321 (323)
T KOG0322|consen 320 WK 321 (323)
T ss_pred ee
Confidence 96
No 164
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.1e-18 Score=177.95 Aligned_cols=284 Identities=15% Similarity=0.218 Sum_probs=212.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC------CeEEEEec-cCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------~~~~~~l~-~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
+-+.+|.+.|.++.|+.++++||+|+.|..++||+++. .+++.... .|...|.|++|...+++|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 44679999999999999999999999999999999763 34444443 466899999999999999999999999
Q ss_pred EEEEcCCCCceeEEee--ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe----eeeEEecCCCeeEEEEecCCC
Q 003236 622 RVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~--~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~----~i~~~~~~~~i~sl~~sp~g~ 695 (837)
.+.|+++... +..+. ...+.|+.+..+|. ..+|++.+.++.|.+||++... ++...........+.|+|...
T Consensus 130 I~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQS-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeeccccee-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999998653 33332 12358999999999 4577788889999999998654 333333456788999999765
Q ss_pred E-EEEEEcCCeEEEEECCCCe-EEEEEcC------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003236 696 R-ILAAAIENYISILDVETQV-CRLKLQG------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 696 ~-llags~dg~I~iwDl~s~~-~~~~l~~------h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
. |++.+..+.+.+||.+... .+....+ ....-.++.|+|.|..|.+-- ...-.+||+-+.. ..+..+..
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D~ 285 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKSDH 285 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEeccC
Confidence 5 5566667899999998653 2222211 122335788999999888766 4466678876642 22222221
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC------------------------CcEEEeccCCCCeeEEE
Q 003236 767 ------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE------------------------NKTLTLSAHDKLVSSLA 816 (837)
Q Consensus 767 ------~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s------------------------~~~~~l~~h~~~V~sla 816 (837)
....+.+|+|..|.. |++|+.+=.|++|.+.. +....+.+|...++.+.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 123467788887766 88888888999998732 12236789999999999
Q ss_pred EeCCCCEEEEEECCCcEEEeC
Q 003236 817 ASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 817 ~spdg~~LaSgs~DG~I~IWd 837 (837)
|++...+|++.+-...++||-
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ecCCcceEeccchhhheeccc
Confidence 999999999999999999993
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=9.8e-18 Score=176.13 Aligned_cols=228 Identities=14% Similarity=0.261 Sum_probs=186.6
Q ss_pred EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 592 TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 592 ~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
.+.+|+++|.+++|+| +...||+||+|.+|.||.+..+. .++..+.+|...|-.+.|+|.-.++|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 57789999999999999987543 3577899999999999999999999999999999
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC-CEEEEEEcCCCCEEEEEe
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~-~V~sl~~spdg~~Lasgs 743 (837)
|.+||+.+++.+..+.+..-|.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.++.++.+|-
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf 235 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF 235 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999988877876 344566778888666664
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEE----EeccCCCCeeE
Q 003236 744 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL----TLSAHDKLVSS 814 (837)
Q Consensus 744 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~~~~----~l~~h~~~V~s 814 (837)
+..+-+||-.+.+..-.+.++.. .+.|.--.|.+|...|+.++ .|+.|+.|.+...... .......+-..
T Consensus 236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence 66899999888765545555553 55677778899988877665 5789999999887743 22233444555
Q ss_pred EEEeCC
Q 003236 815 LAASTV 820 (837)
Q Consensus 815 la~spd 820 (837)
+.|-|.
T Consensus 315 ~g~mPK 320 (472)
T KOG0303|consen 315 MGFMPK 320 (472)
T ss_pred cccccc
Confidence 555554
No 166
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=8.5e-17 Score=177.88 Aligned_cols=266 Identities=10% Similarity=0.183 Sum_probs=184.4
Q ss_pred EEEEECCCcEEEEeCCC-Ce--EEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-CCceeEEeeccccceE
Q 003236 570 LATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVM 644 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t-~~--~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~-~~~~~~~~~~h~~~V~ 644 (837)
+++...|+.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++.. +...............
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34446789999999964 33 445554 346678899999999987765 478999999973 2221111112334567
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCC-Ce---eeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE-
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN-GS---CAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL- 718 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t-~~---~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~- 718 (837)
.++|+|+++.++++...++.|.+|++.+ +. .+..+.......+++++|+++++++++. ++.|.+||+++...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8999999998887777789999999974 32 2233333345778899999999977765 5899999998632221
Q ss_pred ------EEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecC------CCceEEEEEeCCCCEE
Q 003236 719 ------KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSL 783 (837)
Q Consensus 719 ------~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~------~~~I~sv~fspdg~~L 783 (837)
.+. .......+.|+|++++++++. ++.|.+|++... ...+.+..+... ......+.++|+++++
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 234567899999999998877 789999999742 122334333221 1123468899999999
Q ss_pred EEEEc-CCeEEEEECCCCc-EEEeccC---CCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 003236 784 LVIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK 837 (837)
Q Consensus 784 ~sgs~-dg~I~IwDl~s~~-~~~l~~h---~~~V~sla~spdg~~LaSgs~-DG~I~IWd 837 (837)
+++.. ++.|.+|++.... ...+..+ ......+.|+|+|++|++++. +++|.||+
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99865 5799999985432 2222222 235668999999999998775 89999984
No 167
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=5.1e-16 Score=171.65 Aligned_cols=288 Identities=11% Similarity=0.117 Sum_probs=193.5
Q ss_pred EcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCC-CC
Q 003236 510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-SF 587 (837)
Q Consensus 510 ~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~-t~ 587 (837)
++...++.|.+|..... ..+..+..+. +.+....++++|++++|++++ .++.|.+|++. ++
T Consensus 6 ~~~~~~~~I~~~~~~~~----------------g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g 68 (330)
T PRK11028 6 IASPESQQIHVWNLNHE----------------GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG 68 (330)
T ss_pred EEcCCCCCEEEEEECCC----------------CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC
Confidence 33456788888855321 1223344443 234577899999999987765 47889999986 33
Q ss_pred eE--EEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCc---eeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 588 TV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 588 ~~--~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~---~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
+. +.... ..+....++|+|++++|++++. ++.|.+|++++... .+..+. +.....+++++|+++.++++...
T Consensus 69 ~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~ 146 (330)
T PRK11028 69 ALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLK 146 (330)
T ss_pred ceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCC
Confidence 32 22222 3345678999999999988875 88999999975332 122222 33456788999999988888888
Q ss_pred CCcEEEEECCCCeeee-------EEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC--C--eEEEEEcCC------
Q 003236 662 NSEIRYWSINNGSCAG-------VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH------ 723 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~-------~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s--~--~~~~~l~~h------ 723 (837)
++.|.+||+.+...+. ..........+.|+|++++++++.. ++.|.+||++. + +.+..+..+
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 8999999998633221 1223456778999999999988887 89999999973 2 333333322
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC-
Q 003236 724 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT- 798 (837)
Q Consensus 724 ~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~-~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~- 798 (837)
......+.|+|++++|+++. ++.|.+|++.... ....+..... ......+.|+|+|++|+++.. +++|.+|+++
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 12334688999999999886 6799999996543 1223333332 234567899999999998886 7799999874
Q ss_pred -CCcEEE--eccCCCCeeEEEE
Q 003236 799 -ENKTLT--LSAHDKLVSSLAA 817 (837)
Q Consensus 799 -s~~~~~--l~~h~~~V~sla~ 817 (837)
++.... .........+++|
T Consensus 306 ~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 306 ETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred CCCcEEEccccccCCCceEEEE
Confidence 444331 1122344555554
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.8e-18 Score=187.60 Aligned_cols=251 Identities=19% Similarity=0.285 Sum_probs=196.5
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--------CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
-.++..|.+.|+.+.|.+....|++++.||+|.+|++. ..+.+.+|.+|.++|.|+++.+++..+++|+.||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 34788999999999999999999999999999999982 2467789999999999999999999999999999
Q ss_pred eEEEEEcCC---------CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeE
Q 003236 620 TVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQ 687 (837)
Q Consensus 620 ~I~IWDl~~---------~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~s 687 (837)
+|+.|++.. .......+.||.+.|+.++++..... |++|+.||+|+.|+...... .+|.. .+-..+
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~-Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR-LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc-eeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999996542 11334678899999999999998665 56999999999999987665 33322 222344
Q ss_pred EEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC-------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003236 688 MRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 688 l~~sp~g-~~llags~dg~I~iwDl~s~~~~~~l~~-------h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
+.+.... ...++...-+.-.+++.+....+..+.. ....+.-+.++|...+.+++. |+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~--- 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG--- 521 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---
Confidence 5544332 2233333334444455554443333322 123567788999999988888 999999999988
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 759 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 759 ~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
..++....|...++++++.|+|.+|++++.|+.|++|.+....++
T Consensus 522 ~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 522 KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 788888899999999999999999999999999999998777665
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1e-17 Score=173.60 Aligned_cols=266 Identities=16% Similarity=0.297 Sum_probs=192.1
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCc-eeEEeeccc-cce
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV 643 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~~~~~-~~~~~~~h~-~~V 643 (837)
..+|++...|.|++||..++..+..++++...++.++|.. ....+.+|+.||+|++||++.... ....+..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 467899999999999999997544 334455555 456
Q ss_pred EEEEEcCCCCeEEEEEe----CCCcEEEEECCCCee-eeEEe--cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCe
Q 003236 644 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVFK--CQSGATQMRFQPRL-GRILAAAIENYISILDVETQV 715 (837)
Q Consensus 644 ~sl~fspdg~~llasgs----~Dg~I~vwDl~t~~~-i~~~~--~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~ 715 (837)
.|++..-. ..++++|. .+-.|.+||++..+. +..+. +...|++++|+|.. +.|++|+.||.|.+||++...
T Consensus 121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 66666544 44776664 366899999998765 55443 57789999999954 668889999999999998642
Q ss_pred ---EEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCceeEEEeecC------------CCceEEEEEeC
Q 003236 716 ---CRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHP 778 (837)
Q Consensus 716 ---~~~~l~~h~~~V~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~------------~~~I~sv~fsp 778 (837)
.+.....|...|.++.|..++ ++......++..+|++..+.. ...+... ...+..+....
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~---~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE---ETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh---hhcccCccchhhhHHhhhhhhheeecccCC
Confidence 222233477889999999887 544444499999999988742 2111111 11222222233
Q ss_pred CCCEEEEEEc-CCeEEEEEC---CCCcEE----Eec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 779 TFPSLLVIGC-YETLELWNM---TENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~-dg~I~IwDl---~s~~~~----~l~-~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+...+++++. -+...++-+ .++... .+. +|...|.++.|...+.+++||+.||.|.+|+
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 4455555554 455555433 333322 344 4778899999998999999999999999995
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=1.2e-18 Score=196.34 Aligned_cols=274 Identities=18% Similarity=0.286 Sum_probs=218.2
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
.++.|.+|.+.|+|+.|...|.++++|+.|..|+||..++..+...+.+|.+.|+.++.+.+..+++++|.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee-----EEecCCCeeEEEEecCCCEEEEEE
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-----~~~~~~~i~sl~~sp~g~~llags 701 (837)
.++. ++..+.+|++.|++|+|+|-- +.+.||++++||.+-...+. .+.....+.++.|...+..+++++
T Consensus 262 ~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 262 PDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 9865 588999999999999999863 67789999999998211111 122234567777888888899999
Q ss_pred cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003236 702 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 702 ~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd 779 (837)
.|+.-..|...... .+...+.-+.++.+-. +.+++- +..+++|++.++ ...+.+.+|...+..+.++|-
T Consensus 336 ~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred CCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecCC
Confidence 99887777654321 1222222233332322 333333 789999999988 677888899999999999998
Q ss_pred CCEEE-EEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 780 FPSLL-VIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 780 g~~L~-sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
...++ .++.||...|||+-.+..+ ...+ ...+...+||+||..++...+-|.++|.
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEe
Confidence 76554 6788999999999988776 3345 4566778999999998888777888774
No 171
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.2e-16 Score=160.40 Aligned_cols=250 Identities=21% Similarity=0.365 Sum_probs=187.0
Q ss_pred ccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCc
Q 003236 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKK 578 (837)
Q Consensus 501 ~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp--dg~~Lasgs~Dg~ 578 (837)
.++...+.+++++.|..+++|.+.++ ..++..-...+.|.+.|..|.|.+ -|..+|+++.|++
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 35667789999999999999986433 234566677889999999999976 5889999999999
Q ss_pred EEEEeCC---------CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCce------------eEE
Q 003236 579 AVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS------------LRT 635 (837)
Q Consensus 579 I~VWd~~---------t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~~~------------~~~ 635 (837)
|.||.-. ......++......|++|+|.|. |-.||+++.||+||||+.-+.-.. +..
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 9999641 12344567777889999999994 788999999999999997653211 111
Q ss_pred eeccccceEEEEEcCCC--CeEEEEEeCC-----CcEEEEECCCC--eeeeEE---ecCCCeeEEEEecCCC----EEEE
Q 003236 636 FTGHSTTVMSLDFHPSK--EDLLCSCDNN-----SEIRYWSINNG--SCAGVF---KCQSGATQMRFQPRLG----RILA 699 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg--~~llasgs~D-----g~I~vwDl~t~--~~i~~~---~~~~~i~sl~~sp~g~----~lla 699 (837)
...+.....|+.|+|.. ..+|+.|+.+ +.++||....+ +....- .+...|+.++|.|.-+ .|++
T Consensus 165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 22466778899998742 3466666644 47888876543 222222 2467899999999643 4778
Q ss_pred EEcCCeEEEEECCCC--------------------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003236 700 AAIENYISILDVETQ--------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 700 gs~dg~I~iwDl~s~--------------------~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
++.|| |+||.++.. +.+..+.+|.+.|..+.|+-.|..|++.+ ||+||+|...-....
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~ 323 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLW 323 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhh
Confidence 88899 999998731 23455778999999999999999999988 999999987655555
Q ss_pred eeEEEeec
Q 003236 759 ECIHELSC 766 (837)
Q Consensus 759 ~~i~~~~~ 766 (837)
+|+..+..
T Consensus 324 kC~sv~~~ 331 (361)
T KOG2445|consen 324 KCTSVLKA 331 (361)
T ss_pred eeeeEEec
Confidence 56655554
No 172
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.8e-18 Score=182.04 Aligned_cols=292 Identities=20% Similarity=0.304 Sum_probs=228.4
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEEcC--CCCEEEEEeCCCeE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTV 621 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~I~~l~fsp--dg~~Latgs~Dg~I 621 (837)
+.....|..|.+.|..|.|...|..|++|+.|..|.+||...++.+..+ .+|...|.--.|.| +...|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3445668899999999999999999999999999999999988877666 57999998888988 45679999999999
Q ss_pred EEEEcCCCCce--eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec----CC---CeeEEEEec
Q 003236 622 RVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QS---GATQMRFQP 692 (837)
Q Consensus 622 ~IWDl~~~~~~--~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----~~---~i~sl~~sp 692 (837)
++=.+....++ ...+..|.+.|..++..|+..+-|.+|+.|+.+.-+|++.+.....+.+ .. ....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 99887655443 3556779999999999999999999999999999999998766555443 22 467788888
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCeE------EEEEcC------CCCCEEEEEEcCC-CCEEEEEeCCeEEEEEcCCCCC-
Q 003236 693 RLG-RILAAAIENYISILDVETQVC------RLKLQG------HKNQVHSVCWNTS-GEYLASVSDELVRVWSIGSGSK- 757 (837)
Q Consensus 693 ~g~-~llags~dg~I~iwDl~s~~~------~~~l~~------h~~~V~sl~~spd-g~~LasgsDg~I~IwDl~s~~~- 757 (837)
... .+++++.|-.+++||.+.-.. +..+.. ..-.|+|++|+.+ +.+|++-.|-.|++|.-..+.-
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 765 678888999999999875321 222222 2347999999965 4566666698999995432211
Q ss_pred -c-------eeEE-EeecCCCc--eEEEE-EeCCCCEEEEEEcCCeEEEEECCCCcEEE-eccCCCCeeEEEEeCCCCEE
Q 003236 758 -G-------ECIH-ELSCTGNK--FHSCV-FHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMV 824 (837)
Q Consensus 758 -~-------~~i~-~~~~~~~~--I~sv~-fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l~~h~~~V~sla~spdg~~L 824 (837)
. ..+. .+++|.+. |..+- |-|...|+++|+.-|.|.||+-++++++. +.+-...|+||.-+|.-.+|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 0 1122 25566543 55554 56888999999999999999999999884 34444589999999999999
Q ss_pred EEEECCCcEEEe
Q 003236 825 ASASHDKCVKIW 836 (837)
Q Consensus 825 aSgs~DG~I~IW 836 (837)
|+++-|.-|+||
T Consensus 452 AsSGid~DVKIW 463 (559)
T KOG1334|consen 452 ASSGIDHDVKIW 463 (559)
T ss_pred hccCCccceeee
Confidence 999999999999
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.5e-16 Score=183.61 Aligned_cols=282 Identities=16% Similarity=0.229 Sum_probs=210.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccC---CCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~ 627 (837)
+....-..+.|+|=...++++...-.|+|||.+.++....|..+ ...|+.+++-. |..++++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 33445667889998888999987789999999999998777643 35688998876 56789999999999999743
Q ss_pred CCC----ceeEEeec-------cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC--CeeEEEEe-cC
Q 003236 628 NPD----YSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQ-PR 693 (837)
Q Consensus 628 ~~~----~~~~~~~~-------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i~sl~~s-p~ 693 (837)
... ..+..+.+ ..+.-.-++|.....+++++|+ -..|+|||.....++..+.... .++++.-+ ..
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 221 11222221 1122244677777777776665 7899999999988887776543 35555443 34
Q ss_pred CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCC--EEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003236 694 LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~---~~~~~l~~h~~~--V~sl~~spdg~~-Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
|+.|++|..||.|++||.+.. ..+...+.|... |..+.+.+.|.- |++|+ ||.|++||++.... .....+..
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~ 1299 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVA 1299 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeee
Confidence 688999999999999999864 356677788887 999999886654 78888 99999999998532 22222222
Q ss_pred C---CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc-------CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 767 T---GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 767 ~---~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~-------h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
| ++..+++..++..+.|++|+. +.|+||++.......+.. ..+.+.|++|+|..-+||+|+.|.+|.||
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 2 335899999999999988888 999999998766543322 24568999999999999999999999998
Q ss_pred C
Q 003236 837 K 837 (837)
Q Consensus 837 d 837 (837)
.
T Consensus 1379 s 1379 (1387)
T KOG1517|consen 1379 S 1379 (1387)
T ss_pred e
Confidence 3
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=4.8e-16 Score=159.91 Aligned_cols=273 Identities=18% Similarity=0.252 Sum_probs=199.6
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec-CCCCCeEEEEEc-------CCCCEEEEEECCCc
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFS-------PDGKLLATGGHDKK 578 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~H~~~V~sl~fS-------pdg~~Lasgs~Dg~ 578 (837)
..+.+-+.|..+.+|..+.+.-..+. .-...+....+++ .....|...+|- |+..++|+.+.|.-
T Consensus 62 SciL~~sedn~l~~~nlP~dlys~~~-------~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 62 SCILSLSEDNCLNCWNLPFDLYSKKA-------DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceEEeecccCeeeEEecChhhcccCC-------CCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 34556677888899965544222111 0111111122222 123457777775 67789999999999
Q ss_pred EEEEeCCCCeEEEEecc--CCC---CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-Cc-eeEEe-----eccccceEEE
Q 003236 579 AVLWCTESFTVKSTLEE--HTQ---WITDVRFSPSLSRLATSSADRTVRVWDTENP-DY-SLRTF-----TGHSTTVMSL 646 (837)
Q Consensus 579 I~VWd~~t~~~~~~l~~--h~~---~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~-~~-~~~~~-----~~h~~~V~sl 646 (837)
|++||.-+++....+.. |-+ ...+++|+|||..|+.| ....|+|||+... .. .+... .+..+.|.|+
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~ 213 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF 213 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence 99999999998877753 333 34689999999999877 6779999999433 21 22222 2346789999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEEcCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQGH 723 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~-~~~~~l~~h 723 (837)
+|+|.....++.++....+-||.-....++..+. +.++|+.++|.++|+.|++|+. +..|..||++.. .++..+..|
T Consensus 214 a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh 293 (406)
T KOG2919|consen 214 AFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH 293 (406)
T ss_pred eccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence 9999988899999988899999888877776665 4678999999999999999987 679999999864 566777766
Q ss_pred CC-CEEE--EEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003236 724 KN-QVHS--VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 724 ~~-~V~s--l~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d 789 (837)
.. .--. ....|++++|++|+ ||.|++||+.... ..+..+..+...+..++++|--..+++++..
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--CcccccccccccccceecCcccceeeeccCc
Confidence 55 2223 45568999999998 9999999998742 4566677778889999999997766666554
No 175
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.1e-17 Score=178.62 Aligned_cols=254 Identities=19% Similarity=0.195 Sum_probs=191.5
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCc
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~ 578 (837)
...+...+..+++++.|+.+++|..... .......+..+.+|++|.++|.|+++.+++..+++|+.||+
T Consensus 299 ~l~~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 299 ALAFHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred hhhcCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 4456777889999999999999966331 12345677889999999999999999999999999999999
Q ss_pred EEEEeCCC----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEE
Q 003236 579 AVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (837)
Q Consensus 579 I~VWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~f 648 (837)
|+.|++.. .....++.+|.+.|+.++++.....|++|+.||+|++|+......+........+.-.++++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 99995431 12345678999999999999998899999999999999988654322222222234456666
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
......+.++...-+.--++++.....+..+.. ...+..+.++|.....+++..++.|+++|..+++.+...
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 543322232322233333344444444444332 134677889999999999999999999999999999999
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
..|...++++++.|+|-+|.+++ |+.|++|.+... .|+.....
T Consensus 528 ~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k---~~~~es~~ 571 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK---TCVLESTA 571 (577)
T ss_pred eeccceecceeecCCCceEEeecCCceeehhhccch---heeecccc
Confidence 99999999999999999999999 999999998765 45544433
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=3.8e-16 Score=158.66 Aligned_cols=241 Identities=19% Similarity=0.323 Sum_probs=180.7
Q ss_pred cCCCCCeEEEEEcCCCC-----EEEEEECCCcEEEEeCCC--CeEE--EEe-----ccCCCCeEEEEEcC-CCCEEEEEe
Q 003236 552 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTES--FTVK--STL-----EEHTQWITDVRFSP-SLSRLATSS 616 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~-----~Lasgs~Dg~I~VWd~~t--~~~~--~~l-----~~h~~~I~~l~fsp-dg~~Latgs 616 (837)
..|.-+++.+-|.|+.+ +||+++ ..+++|.+.. .+.. ..+ ..+..++++..|+. +.++|.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 36888999999999763 566654 4799998763 2211 112 34677899999987 678999999
Q ss_pred CCCeEEEEEcCCCC--ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec----CCCeeEEEE
Q 003236 617 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC----QSGATQMRF 690 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~----~~~i~sl~~ 690 (837)
-|-++.|||++++. .....+..|...|..|+|...+..+|++++.||.|++||++..+....+.. ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999852 345678889999999999998899999999999999999997654433322 345677888
Q ss_pred ecCCC-EEEEEEcC-CeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCC---ceeEE
Q 003236 691 QPRLG-RILAAAIE-NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSK---GECIH 762 (837)
Q Consensus 691 sp~g~-~llags~d-g~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~---~~~i~ 762 (837)
++..- ++++...| ..|.|.|++.. .++..+.+|.+.|+.|+|.|. ...|++++ |..+.|||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 87554 45554444 68999999975 788999999999999999996 45777777 77999999976432 12222
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 763 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 763 ~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
... .+.+|..+.|++...--++.+.++++.+.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 233 57889999999765444445555555543
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.73 E-value=5.4e-16 Score=157.36 Aligned_cols=263 Identities=20% Similarity=0.276 Sum_probs=194.6
Q ss_pred EEEEEE----CCCcEEEEeCCCCe--EE-EEeccCCCCeEEEEEcCC-CCEEEEEeCC-------CeEEEEEcCCCCce-
Q 003236 569 LLATGG----HDKKAVLWCTESFT--VK-STLEEHTQWITDVRFSPS-LSRLATSSAD-------RTVRVWDTENPDYS- 632 (837)
Q Consensus 569 ~Lasgs----~Dg~I~VWd~~t~~--~~-~~l~~h~~~I~~l~fspd-g~~Latgs~D-------g~I~IWDl~~~~~~- 632 (837)
.|++|+ .|+.|.+.+++... .. ..|..|.+.|+.++-+|- .+.|+|+..+ -.+.||.+......
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 445554 36778777665432 22 566778899999999994 5566666542 25789998754322
Q ss_pred -------eEEee-ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEEec------CCCeeEEEEec-CCCE
Q 003236 633 -------LRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKC------QSGATQMRFQP-RLGR 696 (837)
Q Consensus 633 -------~~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~~------~~~i~sl~~sp-~g~~ 696 (837)
+..+. .+-+.|.|+.|.|++..+++.. |..|.+|++..+.. +..+.. ....++-+|+| ....
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~--dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn 185 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD--DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN 185 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec--cCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence 12222 3456899999999988766433 88999999988765 333221 23467788998 4455
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
-++...|+++..||+++.++...+. .|...|..+.|+|+.. +|++|+ ||.|+|||.+..+ ..+.++..|...+++
T Consensus 186 qv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 186 QVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGHSHWVWA 263 (370)
T ss_pred eEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCCceEEEE
Confidence 6677788999999999987776665 4888999999999876 556666 8999999999764 688899999999999
Q ss_pred EEEeCCC-CEEEEEEcCCeEEEEECCC------------------------------CcEEEeccCCCCeeEEEEeCCCC
Q 003236 774 CVFHPTF-PSLLVIGCYETLELWNMTE------------------------------NKTLTLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 774 v~fspdg-~~L~sgs~dg~I~IwDl~s------------------------------~~~~~l~~h~~~V~sla~spdg~ 822 (837)
+.|+|.. ..|+++++|..|.+|.... |.+.++..|++.|.+++|+.-..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 9999976 5677888898999986521 11225678999999999997554
Q ss_pred -EEEEEECCCcEEE
Q 003236 823 -MVASASHDKCVKI 835 (837)
Q Consensus 823 -~LaSgs~DG~I~I 835 (837)
++|+-+.||.|.|
T Consensus 344 WiFASLSYDGRviI 357 (370)
T KOG1007|consen 344 WIFASLSYDGRVII 357 (370)
T ss_pred eeEEEeccCceEEe
Confidence 7788899999876
No 178
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=2.7e-16 Score=162.19 Aligned_cols=242 Identities=19% Similarity=0.298 Sum_probs=183.4
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcC
Q 003236 553 ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 553 ~H~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~ 627 (837)
.|......++|+-| ..+||+|+.-|.|+|.|+.++++...+.+|...|+.|.|.|+ ..+|+++|.|..|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 46777888888764 347999999999999999999999999999999999999996 5789999999999999999
Q ss_pred CCCceeEEe---eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe------------------------
Q 003236 628 NPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------------ 680 (837)
Q Consensus 628 ~~~~~~~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~------------------------ 680 (837)
+... +..+ .+|.+.|.+++|++++. .+++|+.|..|++|++...+....+.
T Consensus 167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8654 5444 57999999999999988 66699999999999998432111110
Q ss_pred -----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-C-------------eEEEEEcCCCCCEEEE--EEcCCCCEE
Q 003236 681 -----CQSGATQMRFQPRLGRILAAAIENYISILDVET-Q-------------VCRLKLQGHKNQVHSV--CWNTSGEYL 739 (837)
Q Consensus 681 -----~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s-~-------------~~~~~l~~h~~~V~sl--~~spdg~~L 739 (837)
+...|.|+.|. |+++++-+.++.|..|.... . ..+.++.-....|.-+ +|++-.+.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 01112333333 46788888899999998721 1 1222333333445544 456678899
Q ss_pred EEEe-CCeEEEEEcCCCCCcee-EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 740 ASVS-DELVRVWSIGSGSKGEC-IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~-i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
+.|. .|.|++||++......+ .......+..|...+|+.|+..|+..+.|++|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9998 89999999998765322 22223345678999999999999999999999999853
No 179
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=1.1e-15 Score=179.26 Aligned_cols=292 Identities=17% Similarity=0.219 Sum_probs=209.0
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003236 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 617 (837)
..+..+..|...|..++.+++. .+|++|+.||+|+||++.. .+...++......+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4577888999999999988755 8999999999999999753 2333445445778999999999999999999
Q ss_pred CCeEEEEEcCCCCce------eEEeec--cccceEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeeEEec---CCCe
Q 003236 618 DRTVRVWDTENPDYS------LRTFTG--HSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGA 685 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~------~~~~~~--h~~~V~sl~fspdg~-~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i 685 (837)
||.|++.+++..... .+.... ....|..-+|..... .+++.+...+.|..||++.......++. ++.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999999999862211 111111 122333344443333 3666777788999999998877766654 5779
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCC---CCEEEEEe---CCeEEEEEcCCCCCc
Q 003236 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTS---GEYLASVS---DELVRVWSIGSGSKG 758 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spd---g~~Lasgs---Dg~I~IwDl~s~~~~ 758 (837)
++++.+|.+.+++.|+..|.+.+||++-+.++..+. ++..+|+.++.+|- ....++++ .+.|.+|++.++...
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 999999999999999999999999999988887765 34567888777763 34555544 568999999987322
Q ss_pred eeEEEe----------e------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------------------
Q 003236 759 ECIHEL----------S------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL------------------- 803 (837)
Q Consensus 759 ~~i~~~----------~------~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~------------------- 803 (837)
..+..- . .+......+.+...+.++++|+.|..|+.||....+..
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence 221111 0 01112334455556678999999999999997431100
Q ss_pred --------------------------------------EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003236 804 --------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK 837 (837)
Q Consensus 804 --------------------------------------~l~~h~~~V~sla~spdg-~~LaSgs~DG~I~IWd 837 (837)
.-..|..+|+++++.... .+|++++.||.|+||+
T Consensus 1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 011356678888766543 5899999999999996
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=2.7e-16 Score=165.39 Aligned_cols=227 Identities=19% Similarity=0.312 Sum_probs=173.4
Q ss_pred EEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCC-------eEEEEeccCCCCeEEEEEcCC-CCEEEEEeC
Q 003236 547 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSA 617 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~~~~l~~h~~~I~~l~fspd-g~~Latgs~ 617 (837)
.+-.+.||+++|..++|+| +...||+|+.|.+|.||.+... +.+..+.+|...|--|.|+|. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3456789999999999999 5568999999999999987643 456788899999999999995 678999999
Q ss_pred CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC--CeeEEEEecCCC
Q 003236 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GATQMRFQPRLG 695 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i~sl~~sp~g~ 695 (837)
|.+|.+||+.+++..+ .+. |..-|++++|+.+|. ++++.+.|..|+|||.++++.+..-..+. ....+.|..++.
T Consensus 153 Dn~v~iWnv~tgeali-~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALI-TLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred CceEEEEeccCCceee-ecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 9999999999988633 344 999999999999987 67788999999999999999988775433 345677778877
Q ss_pred EEEEEEc----CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCc-eeEEEee
Q 003236 696 RILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKG-ECIHELS 765 (837)
Q Consensus 696 ~llags~----dg~I~iwDl~s~~---~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~-~~i~~~~ 765 (837)
+++.+. +..+-+||...-. ...++. ..+.|.---|++|..+|+.++ |+.|+.|.+...... ..+.++.
T Consensus 230 -i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~ 307 (472)
T KOG0303|consen 230 -IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS 307 (472)
T ss_pred -eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc
Confidence 554443 5689999876542 233333 456677778899999888877 999999999876321 1222222
Q ss_pred cCCCceEEEEEeCC
Q 003236 766 CTGNKFHSCVFHPT 779 (837)
Q Consensus 766 ~~~~~I~sv~fspd 779 (837)
...+-..+.|-|.
T Consensus 308 -S~epQRG~g~mPK 320 (472)
T KOG0303|consen 308 -SKEPQRGMGFMPK 320 (472)
T ss_pred -cCCcccccccccc
Confidence 2334455555554
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.4e-15 Score=174.45 Aligned_cols=258 Identities=18% Similarity=0.234 Sum_probs=189.4
Q ss_pred CcEEEEeCCCC-eEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCce-----eEEeeccccceEEEEEc
Q 003236 577 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS-----LRTFTGHSTTVMSLDFH 649 (837)
Q Consensus 577 g~I~VWd~~t~-~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~-----~~~~~~h~~~V~sl~fs 649 (837)
+.+.||+++.. .+...+ .-...|.|++|+| +..+|+.|+.+|.|.+||+...... -.....|..+|+.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 444444 3567899999999 5778889999999999999876542 12345688999999998
Q ss_pred CCCCe-EEEEEeCCCcEEEEECCCCeee------eEE-------ecCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCC
Q 003236 650 PSKED-LLCSCDNNSEIRYWSINNGSCA------GVF-------KCQSGATQMRFQPR-LGRILAAAIENYISILDVETQ 714 (837)
Q Consensus 650 pdg~~-llasgs~Dg~I~vwDl~t~~~i------~~~-------~~~~~i~sl~~sp~-g~~llags~dg~I~iwDl~s~ 714 (837)
.+... =|++++.||.|..|+++.-... ... .....++++.|.+. -..+++|+.+|.|..-+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 65333 2447778999999988754321 111 12345788999884 456888888998887443322
Q ss_pred ---e-----EEEEEcCCCCCEEEEEEcCCCCEE-EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE-E
Q 003236 715 ---V-----CRLKLQGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL-L 784 (837)
Q Consensus 715 ---~-----~~~~l~~h~~~V~sl~~spdg~~L-asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L-~ 784 (837)
. ....+..|.++|+++.++|-+..+ .+++|.+|+||...... .++..+..+...+++++|||....+ +
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--SPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--CcchhhhhccceeeeeEEcCcCceEEE
Confidence 1 133455688999999999977544 44559999999977321 5666677777779999999988654 4
Q ss_pred EEEcCCeEEEEECCCCcE--E-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 785 VIGCYETLELWNMTENKT--L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~~~--~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++..+|.|.|||+..... + ....+....+.+.|++.|++|++|+..|.|++|+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 555699999999865432 2 4444567778889999999999999999999985
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.6e-15 Score=149.14 Aligned_cols=268 Identities=15% Similarity=0.175 Sum_probs=191.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCC----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
.|.+-+|+|.+++|+.|..+|.|.++.+++ ...+....+|.++|+.++|.. .+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 366778999999999999999999998753 234455589999999999983 4667665 599999987
Q ss_pred CCCCcee-------EEeec-----cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEecC
Q 003236 627 ENPDYSL-------RTFTG-----HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPR 693 (837)
Q Consensus 627 ~~~~~~~-------~~~~~-----h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~sl~~sp~ 693 (837)
....... ....- .-..|+++...|..+.++.+| .|+.++.||+++|+..++++.+.. +.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 6432100 01111 224688999999877777555 599999999999999999997654 777777666
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEcCCC----------CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEE
Q 003236 694 LGRILAAAIENYISILDVETQVCRLKLQGHK----------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~~~~~~l~~h~----------~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~ 763 (837)
...+++|++||++++||+++++++..+...+ .+|-+++. +..+|++|....+.+|.+++. ++...
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~lslwhLrss---e~t~v 242 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPKLSLWHLRSS---ESTCV 242 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCceeEEeccCC---CceEE
Confidence 7889999999999999999999988775421 24555554 567888888889999999987 44444
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEe
Q 003236 764 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIW 836 (837)
Q Consensus 764 ~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spd-g~~LaSgs~DG~I~IW 836 (837)
+.. ...+..+.|..+ .+++++..+.|.-|.+..--...........++..|+-. -++|-.++....+.|+
T Consensus 243 fpi-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 243 FPI-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred Eec-ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 432 456777888766 577777777888887754333333333334444444432 2455566666666665
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.7e-15 Score=172.20 Aligned_cols=281 Identities=17% Similarity=0.292 Sum_probs=210.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
.|.-.++|.++||+++++|+|..||.|.||.--. ......++-|.+.|++++|+++|.+|++|+..|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 5667799999999999999999999999995322 223456777999999999999999999999999999999999
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec------------CCCeeEEEEecCCCE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------------QSGATQMRFQPRLGR 696 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------------~~~i~sl~~sp~g~~ 696 (837)
++ ...+..-.++|..+.++||++.+. .+..|+.|.+....+......+.+ .+-.+.++++|.-+.
T Consensus 283 ~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 283 GK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 77 566677789999999999987555 555599999988765554443332 122567889998888
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcC-----C------CCCEEEEEEcCCCCEEEEEe---------CC--eEEEEEcCC
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQG-----H------KNQVHSVCWNTSGEYLASVS---------DE--LVRVWSIGS 754 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~-----h------~~~V~sl~~spdg~~Lasgs---------Dg--~I~IwDl~s 754 (837)
++..+..+.|.+||+-+.+.+..+.. + .-.++.++.+..|.++++.. || .+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 88999999999999988766555431 2 22467788888899998874 33 688998776
Q ss_pred CCCceeEEE--eecCCCceEEEEEeC-CCC-EEEEEEcCCeEEEEECCCCc----------EE-EeccCCCCeeEEEEeC
Q 003236 755 GSKGECIHE--LSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAST 819 (837)
Q Consensus 755 ~~~~~~i~~--~~~~~~~I~sv~fsp-dg~-~L~sgs~dg~I~IwDl~s~~----------~~-~l~~h~~~V~sla~sp 819 (837)
......+.+ ...|+..+...++.+ ... .+++++.||.++||-+.+.+ +. .-..|..++++++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 544333322 335666555555543 333 78899999999999883322 11 1124789999999999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 003236 820 VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 820 dg~~LaSgs~DG~I~IWd 837 (837)
||..| +++.|++|.|||
T Consensus 520 dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 520 DGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCcEE-EEecCCEEEEec
Confidence 99655 456788999997
No 184
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=5.8e-16 Score=160.67 Aligned_cols=275 Identities=15% Similarity=0.179 Sum_probs=198.9
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEE
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW 582 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp--dg~~Lasgs~Dg~I~VW 582 (837)
-+..++++...+.|++|.... + ..+..+++|...+..+.|.. ....+.+++.||+|++|
T Consensus 39 ~e~~vav~lSngsv~lyd~~t----------------g---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 39 FETAVAVSLSNGSVRLYDKGT----------------G---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred cceeEEEEecCCeEEEEeccc----------------h---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 346788999999999985432 2 22455667777788888876 45678999999999999
Q ss_pred eCCCCeEEEE--eccCC-CCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCcee-EEeeccccceEEEEEcCCCCe
Q 003236 583 CTESFTVKST--LEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 583 d~~t~~~~~~--l~~h~-~~I~~l~fspdg~~Latgs~----Dg~I~IWDl~~~~~~~-~~~~~h~~~V~sl~fspdg~~ 654 (837)
|+........ +..+. .+..|++....+..+++|.. |-.|.+||++.....+ .....|...|+++.|+|.+..
T Consensus 100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn 179 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN 179 (376)
T ss_pred EeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC
Confidence 9987655543 34454 46677777767788888764 6789999999877644 445679999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCC----eeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----
Q 003236 655 LLCSCDNNSEIRYWSINNG----SCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK----- 724 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~----~~i~~~~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~~~~l~~h~----- 724 (837)
+|++|+.||.|.+||++.. ..+.++.+...|.++.|..++ +.|.+.+......+|+++.+.+...+....
T Consensus 180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 9999999999999999754 245667777889999998875 468899999999999999887655443211
Q ss_pred -------CCEEEEEEcCCCCEEEEE-e-CCeEEEEEc---CCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCe
Q 003236 725 -------NQVHSVCWNTSGEYLASV-S-DELVRVWSI---GSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYET 791 (837)
Q Consensus 725 -------~~V~sl~~spdg~~Lasg-s-Dg~I~IwDl---~s~~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~dg~ 791 (837)
..+.......+..+++.+ + -+...++-+ .++.....+..+.+ |...|.++.|...+..+++|+.||.
T Consensus 260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCce
Confidence 111111111233344333 3 344444433 33433344555555 5566788999999999999999999
Q ss_pred EEEEECC
Q 003236 792 LELWNMT 798 (837)
Q Consensus 792 I~IwDl~ 798 (837)
|.+|...
T Consensus 340 l~~Wk~~ 346 (376)
T KOG1188|consen 340 LQAWKVE 346 (376)
T ss_pred EEEEecC
Confidence 9999853
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.4e-15 Score=172.33 Aligned_cols=233 Identities=16% Similarity=0.108 Sum_probs=165.3
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCc-eeEEeeccccceEEEEEcCC
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS 651 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~-~~~~~~~h~~~V~sl~fspd 651 (837)
+..|+|||.+... ...+..|...|.+++|+|||+.|+.++.+ ..|++||+.++.. .+..+.+ ...+++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCC
Confidence 4689999987654 45667788899999999999999988754 3799999987653 2222333 3457899999
Q ss_pred CCeEEEEEeCCCcEE--EEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCC-eEEEEEcCCCCCE
Q 003236 652 KEDLLCSCDNNSEIR--YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQ-VCRLKLQGHKNQV 727 (837)
Q Consensus 652 g~~llasgs~Dg~I~--vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~-~~~~~l~~h~~~V 727 (837)
|..++++.+.+|.+. +||+.++...........+....|+|+++.|++++ .++...||++... .....+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence 998887777777654 55777666555444455677899999999887665 4677777765432 222223 3433
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC---CCCcEEE
Q 003236 728 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM---TENKTLT 804 (837)
Q Consensus 728 ~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl---~s~~~~~ 804 (837)
.++.|+|||++|+.++...+.+||+.++.. ...... .....+.|+|+|++|++++.++.+.+|++ .......
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~---~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNVVKQDLTSGST---EVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred CCccCCCCCCEEEEEcCCCEEEEECCCCCe---EEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 467899999999888745577799987732 111111 23356789999999999999887776654 3334446
Q ss_pred eccCCCCeeEEEEeCC
Q 003236 805 LSAHDKLVSSLAASTV 820 (837)
Q Consensus 805 l~~h~~~V~sla~spd 820 (837)
+..|.+.+..++|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 7788888999999984
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.70 E-value=6.3e-16 Score=167.55 Aligned_cols=262 Identities=16% Similarity=0.242 Sum_probs=190.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEE-cC-------CCCEEEEEeCCCeEEEE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW 624 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~f-sp-------dg~~Latgs~Dg~I~IW 624 (837)
.|...|.||.|+.+...+.+++ |..+.+|...+......+.-..+.|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5677788999998877666655 555666643332322222222222222211 11 23478889999999988
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg 704 (837)
+-.. ..-+....|.+.|.|-.|+|+|..++ ++++||.|++|.-...-..........|.|++|.|+.+.++.+. .+
T Consensus 91 ~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 NKSA--RVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred cccc--hhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 7653 23567788999999999999998666 88899999999865322222233457899999999988776654 36
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
.+.|=.+.-...+...+.|.+-|.++.|++..+++++|+ |-..+|||-.. ..+..-..|..+|++++|.|+ ..+
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~~~ 241 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-KDY 241 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-cce
Confidence 677777777777778889999999999999999999999 88999999654 466667788999999999999 434
Q ss_pred EEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 784 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 784 ~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
++ ++.+++++= ....+.|..++||+||..++.|+..|.|.+
T Consensus 242 ~v-~S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 242 LL-WSYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ee-eeeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 44 444455522 234568999999999999999999887753
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.69 E-value=1.8e-15 Score=153.53 Aligned_cols=248 Identities=16% Similarity=0.280 Sum_probs=184.0
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEECC-------CcEEEEeCCC---------CeEEEEec-cCCCCeEEEEEcCCCC
Q 003236 549 QLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTLE-EHTQWITDVRFSPSLS 610 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSp-dg~~Lasgs~D-------g~I~VWd~~t---------~~~~~~l~-~h~~~I~~l~fspdg~ 610 (837)
.+|..|.+.|+.++-+| |.++|+++..+ ..+.||.+.. .+++..+. .+-+.|.||.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 45678899999999999 66677776542 2578998753 23344443 4556899999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEe-----eccccceEEEEEcCC-CCeEEEEEeCCCcEEEEECCCCeeeeEEec--C
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKC--Q 682 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~-----~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~ 682 (837)
.|++-. |..|.+|++......+..+ ..+....++-+|+|. ..+.+++. .|+++..||+++.++...+.. .
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence 888875 8899999998766423222 235567888899983 23344344 489999999999888877764 4
Q ss_pred CCeeEEEEecCCCE-EEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCC--
Q 003236 683 SGATQMRFQPRLGR-ILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGS-- 756 (837)
Q Consensus 683 ~~i~sl~~sp~g~~-llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~-- 756 (837)
..+..+.|+|+..+ |++++.||.|+|||.+.. .++.++.+|..+|.++.|+|.. .+|++++ |..|.+|-..+-.
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 45899999998766 556677899999999864 6889999999999999999964 4555666 9999999654311
Q ss_pred -------------------C-----ceeEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECC
Q 003236 757 -------------------K-----GECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMT 798 (837)
Q Consensus 757 -------------------~-----~~~i~~~~~~~~~I~sv~fspdg~~L~-sgs~dg~I~IwDl~ 798 (837)
+ ...+.++..|...|++++|+.-.++++ +-+.||.+.|=.+.
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 0 113446777899999999999888765 45778888776654
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=6.1e-15 Score=146.55 Aligned_cols=229 Identities=20% Similarity=0.218 Sum_probs=168.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~---------~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD 669 (837)
.|..-+|+|.+++|+.|+.+|.|.++.+.. ++.++..+.+|.++|+.++|+ +.++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~---d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH---DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee---hhheeecc-CceEEEee
Confidence 456678999999999999999999998763 334556678999999999999 33566776 69999998
Q ss_pred CCCCee------eeEEe--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 003236 670 INNGSC------AGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 735 (837)
Q Consensus 670 l~t~~~------i~~~~--------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd 735 (837)
.+.... +.... .-..|+.+-..|..+.++.++.|+.++.||+++++..+++++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 764322 11111 1235889999999999999999999999999999999999999999999998554
Q ss_pred CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec------C-CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc
Q 003236 736 GEYLASVS-DELVRVWSIGSGSKGECIHELSC------T-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 807 (837)
Q Consensus 736 g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~------~-~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~ 807 (837)
...+++|+ ||++||||+++.+....+...+. + +..|-+++. +..++++|+ ...+.+|+++..+......
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe
Confidence 55566666 99999999999843332222211 1 223444444 444555554 4579999999999887777
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 808 HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 808 h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
....|..+.|.. +.+++++....|.-|
T Consensus 245 ipa~v~~v~F~~--d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVD--DCVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeec--ceEEEeccccceeee
Confidence 778888888874 446666655444443
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=1.8e-15 Score=173.58 Aligned_cols=246 Identities=17% Similarity=0.237 Sum_probs=188.6
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeE--E----EEeccCCCCeEEEEEcCCC--CEEEEEeCCCeEEEE
Q 003236 554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--K----STLEEHTQWITDVRFSPSL--SRLATSSADRTVRVW 624 (837)
Q Consensus 554 H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~--~----~~l~~h~~~I~~l~fspdg--~~Latgs~Dg~I~IW 624 (837)
-...|+|++|+| +..+||.|..+|.|.+||+..+.. . .....|..+|+.+.|..+. .-|++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 456799999999 667889999999999999986554 2 2234699999999998754 449999999999999
Q ss_pred EcCCCCceeEEe-----e------ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC---CCe-----ee-eEEecCCC
Q 003236 625 DTENPDYSLRTF-----T------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGS-----CA-GVFKCQSG 684 (837)
Q Consensus 625 Dl~~~~~~~~~~-----~------~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~---t~~-----~i-~~~~~~~~ 684 (837)
+++.-..+.... . .-...+++++|.+.....|+.|+++|.|..-+-. ... .. ....+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 887533222111 1 1234688999999888899999999998873332 222 11 22234678
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeE
Q 003236 685 ATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 685 i~sl~~sp~g~~llags~dg~I~iwDl~-s~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i 761 (837)
|+++.++|-+..++..+.|..|+||... ...++..+..+...|++++|||... .++++. ||.|.|||+..... .++
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence 9999999988887777779999999988 6778888888888899999999875 455555 99999999986543 344
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 762 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
............+.|++.|+.|++|...|.+++|++...
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 444444666778888999999999999999999998643
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=1.9e-15 Score=166.92 Aligned_cols=240 Identities=16% Similarity=0.208 Sum_probs=183.5
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
...++++|.+.|+|++|+.||+.+|+|+.|+.|.||+-.-. -+..+ .|.+.|.|+.|+|-...|++|+-. ..-+|..
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ceeee-ccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 46788999999999999999999999999999999985432 22233 599999999999999999999765 4678887
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCC-----CEEE
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRL-----GRIL 698 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g-----~~ll 698 (837)
+.... ... .....|.+++|..||. +++.|-.+|+|.+-+-...+.+..-. .+++|.+++|+|.. ..++
T Consensus 122 ~qK~V--~K~-kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 122 EQKSV--SKH-KSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hhhhH--Hhh-hhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 75332 111 2345788999999976 66688889999998665433333333 35679999999964 3466
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003236 699 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 777 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fs 777 (837)
+.....++.+|.+.. +.+..-+.-.-...|+.+.++|+|+..|+ |+.+++|.-. + ..+.++......|++++..
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~ 272 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK 272 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence 666777777777653 33332223344567899999999999888 9999999643 2 4566666678899999999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 003236 778 PTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 778 pdg~~L~sgs~dg~I~IwDl~ 798 (837)
|++.++++|+.||+|..|++.
T Consensus 273 PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 273 PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cCCceEEEEEccCeeehhhhH
Confidence 999999999999999999873
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.5e-14 Score=147.05 Aligned_cols=283 Identities=15% Similarity=0.216 Sum_probs=204.2
Q ss_pred EEEEecCCCCCeEEEEEcC--C-CCEEEEEEC----CCcEEEEeC--CCCeEEEEe-ccCCCCeEEEEEcCCCC-----E
Q 003236 547 EFQLIPASTSKVESCHFSP--D-GKLLATGGH----DKKAVLWCT--ESFTVKSTL-EEHTQWITDVRFSPSLS-----R 611 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSp--d-g~~Lasgs~----Dg~I~VWd~--~t~~~~~~l-~~h~~~I~~l~fspdg~-----~ 611 (837)
++..+.++- .++++.|+. + +.+||.|+. .++|.|..+ ++++.+..- ..|..+++.+.|.|+.. +
T Consensus 37 eiy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 344444433 478888884 3 346888874 456666644 344444222 36889999999999753 4
Q ss_pred EEEEeCCCeEEEEEcCCCCcee--------EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe----eeeEE
Q 003236 612 LATSSADRTVRVWDTENPDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----CAGVF 679 (837)
Q Consensus 612 Latgs~Dg~I~IWDl~~~~~~~--------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~----~i~~~ 679 (837)
|||++ ..+|+|.+...+..+ ..-..+..++++++|+.-..+++.+++-|-++.|||++++. ....+
T Consensus 116 LATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 55553 479999988432211 12234668999999999888899999999999999999873 34456
Q ss_pred ecCCCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEEc---CCCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEc
Q 003236 680 KCQSGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQ---GHKNQVHSVCWNTS-GEYLASVS--DELVRVWSI 752 (837)
Q Consensus 680 ~~~~~i~sl~~sp~g~-~llags~dg~I~iwDl~s~~~~~~l~---~h~~~V~sl~~spd-g~~Lasgs--Dg~I~IwDl 752 (837)
.+..+|..++|...+. .+++++.||.|++||++..+.-..+. ....+...++|++. -+++|+-. ...|.|.|+
T Consensus 194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 6788999999998654 57778899999999999864333332 22457888999874 46777766 448999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE------EEeccCCCCeeEEEEeC-CCCEE
Q 003236 753 GSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT------LTLSAHDKLVSSLAAST-VNGMV 824 (837)
Q Consensus 753 ~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~------~~l~~h~~~V~sla~sp-dg~~L 824 (837)
+... ..+..+..|...|..++|.|.. .+|++++.|..+.|||+..--. +......+.|+.+.|++ ....|
T Consensus 274 R~P~--tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwi 351 (364)
T KOG0290|consen 274 RVPC--TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWI 351 (364)
T ss_pred cCCC--cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEE
Confidence 9764 6788899999999999999975 5688888888999999965332 22234678899999996 45677
Q ss_pred EEEECCCcEEE
Q 003236 825 ASASHDKCVKI 835 (837)
Q Consensus 825 aSgs~DG~I~I 835 (837)
+.+.. +++.|
T Consensus 352 ai~~~-kklei 361 (364)
T KOG0290|consen 352 AICFG-KKLEI 361 (364)
T ss_pred EEEec-CeeeE
Confidence 77654 44433
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.1e-13 Score=145.40 Aligned_cols=233 Identities=16% Similarity=0.246 Sum_probs=174.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCce
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYS 632 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~~~~~~ 632 (837)
...|..+.|..|...|.+|+.|| .++|+.+..............|..+-|+. .++|..+.+. .++++++.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~- 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT- 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce-
Confidence 34577788999999999999987 67888776554333333344566666664 4666665543 588998886443
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC----CCeeEEEEecCCCEEEEEE--cCCeE
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ----SGATQMRFQPRLGRILAAA--IENYI 706 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~----~~i~sl~~sp~g~~llags--~dg~I 706 (837)
+..+. ....|.++.++.+ +++ .+-. ..|+|||+++.+.+.++... .++..+.++..+.+++.-+ ..|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 33332 4567999998854 344 4443 34999999999999888753 2355555555556776543 35899
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCE
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPS 782 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~fspdg~~ 782 (837)
.+||+.+-+.+..+..|++.+-+++|+++|.+||+++ .| .||||.+.++ ..+.+|... ...|.+++|+|++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9999999999999999999999999999999999999 44 7999999988 555555432 356899999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 003236 783 LLVIGCYETLELWNMTE 799 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s 799 (837)
|++.+..++|+||.++.
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998854
No 193
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=2.7e-14 Score=147.28 Aligned_cols=271 Identities=15% Similarity=0.205 Sum_probs=201.8
Q ss_pred CCeEEEEEcCCCCEEEE-EECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCCCcee
Q 003236 556 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Las-gs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~-Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
+.|.-+.|..|..++++ ...|+.|.+|++...+-...+......+.+++|+|||+. |.+...|-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 56778888888776554 467889999999988888889888899999999999955 5567779999999999866433
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeC-----------------------------------CCcEEEEECCCCeeeeE
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------------------------NSEIRYWSINNGSCAGV 678 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~-----------------------------------Dg~I~vwDl~t~~~i~~ 678 (837)
.... ...+..++|+|+|.+..+..-. +..+.+||---.-.+..
T Consensus 129 ~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 LPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred eccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 3222 3446888999998754432211 23455555433333344
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE---------------------------------------
Q 003236 679 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--------------------------------------- 719 (837)
Q Consensus 679 ~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~--------------------------------------- 719 (837)
+...-++..+.|+|.+.++++|+.|+.++|.+--+.+...+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 45557889999999999999999999888765332221100
Q ss_pred ---------------------Ec------CCCCCEEEEEEcCCCCEEEEEeCC---eEEEEEcCCCCCceeEEEeecCCC
Q 003236 720 ---------------------LQ------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 720 ---------------------l~------~h~~~V~sl~~spdg~~LasgsDg---~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
++ ...-.+.-++|++|..|+++-.|. .+-+||++.. .++.+-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence 00 011234568999999999998755 7999999875 2333344567
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 770 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
+|....|+|....|+++.....+++|.......+......-.|..+.|.-+|..++.++.|..
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 899999999999999999999999999988777777777789999999999999999998864
No 194
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=4.2e-14 Score=161.90 Aligned_cols=234 Identities=13% Similarity=0.111 Sum_probs=171.3
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
..|.+||.+..... .+..+...+.+.+|+|||+.|+..+. +..|++||+.+++. ..+......+..+.|+|||.
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence 36889998765443 34456778999999999999987653 45799999987653 23333334456789999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 003236 654 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 654 ~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-g--~I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
.++++.+.+| .|++||+.+++..........+....|+|+++.|+.++.+ + .|+++|+.++... .+..+...+.
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766555 5999999988776665555667889999999998877764 3 5666677776443 3333444566
Q ss_pred EEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 003236 729 SVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 801 (837)
Q Consensus 729 sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~ 801 (837)
+.+|+|||++|+..+ + ..|.+||+.++.. ..+.. ........|+|||+.|++++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe----EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 789999999998766 3 2688999987632 22221 12234678999999999998876 47888987777
Q ss_pred EEEeccCCCCeeEEEEeC
Q 003236 802 TLTLSAHDKLVSSLAAST 819 (837)
Q Consensus 802 ~~~l~~h~~~V~sla~sp 819 (837)
...+..|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 777878888999999987
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=1.2e-14 Score=149.79 Aligned_cols=226 Identities=15% Similarity=0.203 Sum_probs=173.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC---CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t---~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
+.--..+|+|.+|++|+..+|++.....|.||.... .+...++..|...|++|+|.|..+.|++|+.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 334457899999999999999999999999998764 45778999999999999999999999999999999999984
Q ss_pred -CCCc-eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-----EecCCCeeEEEEecCCCEEEEE
Q 003236 628 -NPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----FKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 628 -~~~~-~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-----~~~~~~i~sl~~sp~g~~llag 700 (837)
.++. +...+..++..++++.|+|.++ .|++|+....|.||-++...--.+ ....+.|.++.|+|++-.+++|
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 3332 3456677899999999999965 666888888898887765443221 2234678999999999999999
Q ss_pred EcCCeEEEEECC-----C-------------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeE
Q 003236 701 AIENYISILDVE-----T-------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 701 s~dg~I~iwDl~-----s-------------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i 761 (837)
+.|+..+||..- . |..+.++....+.|..+.|+|+|..|+-.+ |..|.+-|...... .+
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v 242 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RV 242 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hc
Confidence 999999888532 1 122333434567899999999999999887 99999999876531 22
Q ss_pred EEeecCCCceEEEEEeCC
Q 003236 762 HELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspd 779 (837)
.......-+..++.|-.+
T Consensus 243 ~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 243 QSVATAQLPLLSVSWISE 260 (361)
T ss_pred cchhhccCCceeeEeecC
Confidence 222223355556655444
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=7.2e-15 Score=168.36 Aligned_cols=220 Identities=17% Similarity=0.194 Sum_probs=158.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEE--EEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSS-ADRTVR 622 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~~--~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~ 622 (837)
..+..|...|.+.+|||||+.|++++.+ ..|++||+.+++.. ..+.+ ...+++|+|||+.|++++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEE
Confidence 4456788889999999999999988754 36999999887543 33333 345789999999888765 678665
Q ss_pred EE--EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEE
Q 003236 623 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA 699 (837)
Q Consensus 623 IW--Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~sl~~sp~g~~lla 699 (837)
|| |+.++. ...+..+...+.+..|+|++..+++++..++.+.||++... .....+.. .. .+..|+|+++.|++
T Consensus 274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~-~~-~~~~~SpDG~~ia~ 349 (429)
T PRK01742 274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG-RG-YSAQISADGKTLVM 349 (429)
T ss_pred EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC-CC-CCccCCCCCCEEEE
Confidence 55 555443 45566677778899999999988877777888888876432 22223322 22 56789999999988
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 700 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
++.++ +.+||+.++........+ ...++.|+|||++|+.++ ++.+.+|++.+.. ...+..+..+.+.+..++|+|
T Consensus 350 ~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~-G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 350 INGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD-GRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCceEEccCCCCCCCCcccCC
Confidence 87754 666999988655333222 345688999999999988 8877877764211 156677777778888899998
Q ss_pred C
Q 003236 779 T 779 (837)
Q Consensus 779 d 779 (837)
-
T Consensus 426 ~ 426 (429)
T PRK01742 426 Y 426 (429)
T ss_pred C
Confidence 5
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=4.7e-14 Score=148.09 Aligned_cols=230 Identities=14% Similarity=0.181 Sum_probs=180.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCe
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS 674 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~vwDl~t~~ 674 (837)
...+..+.|..+...|..|+.|| .++|+.+.-.. ..........|..+-|+.. +++..+.+ ..+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-~~~~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-CFSKDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHH-hhcccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34577788999999999999998 57888775443 1111222344566667633 55544433 459999999999
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---CCCCEEEEEEcCCCCEEEEEe---CCeEE
Q 003236 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR 748 (837)
Q Consensus 675 ~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~---h~~~V~sl~~spdg~~Lasgs---Dg~I~ 748 (837)
.+..+.....|.++.++.+ +++++-.+. |+|||+++.+.+.++.. +...+.++.+++.+.||+.-+ .|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 9999999999999999764 555555444 99999999999888764 444566777777777998754 68999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EeccC--CCCeeEEEEeCCCCEE
Q 003236 749 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAH--DKLVSSLAASTVNGMV 824 (837)
Q Consensus 749 IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~s~~~~-~l~~h--~~~V~sla~spdg~~L 824 (837)
|||+.+- ..+..+..|.+.+-+++|+++|.+|++++..| .|+||.+.+|..+ .+... ...|.+++|++++.+|
T Consensus 157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9999887 78888899999999999999999999999999 6899999999887 33322 3468899999999999
Q ss_pred EEEECCCcEEEeC
Q 003236 825 ASASHDKCVKIWK 837 (837)
Q Consensus 825 aSgs~DG~I~IWd 837 (837)
++.+..++|+||+
T Consensus 234 ~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 234 AASSNTETVHIFK 246 (391)
T ss_pred EEecCCCeEEEEE
Confidence 9999999999985
No 198
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=1.8e-13 Score=152.79 Aligned_cols=286 Identities=17% Similarity=0.173 Sum_probs=186.3
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW 624 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IW 624 (837)
+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ .++.+.|+
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEe
Confidence 3455555544434457899999999999999999999999999999987544 468899999999998776 58999999
Q ss_pred EcCCCCceeEEeec-------cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee--eEEecCCCeeEEEEecCCC
Q 003236 625 DTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 625 Dl~~~~~~~~~~~~-------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i--~~~~~~~~i~sl~~sp~g~ 695 (837)
|..+.+. +..+.. ....+..|..++.+..++++.-+.+.|.+.|....+.+ ..+..........|+|+++
T Consensus 106 D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 106 DAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp ETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred ccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 9998664 444432 23467788888887777767666789999998765533 4455566788899999999
Q ss_pred EEEEEEc-CCeEEEEECCCCeEEEEEcC----CCCCEEEEE-------Ec--CCCCEE-EEEeCCeEEEEEcCCCCCcee
Q 003236 696 RILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WN--TSGEYL-ASVSDELVRVWSIGSGSKGEC 760 (837)
Q Consensus 696 ~llags~-dg~I~iwDl~s~~~~~~l~~----h~~~V~sl~-------~s--pdg~~L-asgsDg~I~IwDl~s~~~~~~ 760 (837)
+++++.. ++.|.++|.++++.+..+.. |..++..+- |. ..+.+. ...+.+.+.+||..+. +.
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kv 261 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KV 261 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eE
Confidence 9887654 68999999999987776542 444444331 21 122222 2222445556666665 67
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEECCCCcEEEecc--CCCCeeEEEEeCCCCEEEEEECC--Cc
Q 003236 761 IHELSCTGNKFHSCVFHPTFPSLLVI---G-CYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHD--KC 832 (837)
Q Consensus 761 i~~~~~~~~~I~sv~fspdg~~L~sg---s-~dg~I~IwDl~s~~~~~l~~--h~~~V~sla~spdg~~LaSgs~D--G~ 832 (837)
+..+...+.. .-+..+|+++++++. + ..+.|.++|..+.+.+.... ....+..+.|+++|+.+..+..| |.
T Consensus 262 v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~ 340 (369)
T PF02239_consen 262 VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGA 340 (369)
T ss_dssp EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCE
Confidence 7888877777 778889999999998 3 34699999999998764332 22359999999999976665544 36
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|.|||
T Consensus 341 i~v~D 345 (369)
T PF02239_consen 341 IVVYD 345 (369)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99886
No 199
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.3e-14 Score=157.07 Aligned_cols=277 Identities=14% Similarity=0.167 Sum_probs=203.7
Q ss_pred CCCCCeEEEEEcCCCCE-EEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 553 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
+|....+.|..+|||+| +|+|...-.|++||+....+...-.-....|.-.-++.|-..++.-..|.+|-+...-....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 57777889999999997 56788888999999987666544333345566666666656666666787777654432111
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILD 710 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~I~iwD 710 (837)
.++ -...-.+++++.-...+++.| ....|+-++++.|..+..+... ++++++.+++..+.|++|+.+|.|..||
T Consensus 129 ~~R----IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 129 RTR----IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eee----cCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 111 122334566664444455444 4668999999999999988875 7799999999999999999999999999
Q ss_pred CCCCeEEEEEc------CCCC-----CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 711 VETQVCRLKLQ------GHKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 711 l~s~~~~~~l~------~h~~-----~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
.++...+..+. .|.+ .|+++.|+.+|-.+++|+ +|.|.|||+++.. ..+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--PLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC--ceeecccCCccceeeecccc
Confidence 99876555443 2333 499999999999999998 9999999999874 22333334456788889977
Q ss_pred CCCE-EEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 779 TFPS-LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 779 dg~~-L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.+.. .++......++|||-.+|+..........|+.+|+-|++.++++|-+++.+..|
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 6433 333334448999999999999777777789999999999999999888776543
No 200
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=9.1e-16 Score=166.73 Aligned_cols=238 Identities=17% Similarity=0.265 Sum_probs=171.2
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR 622 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~ 622 (837)
.....+.||++-|.|+.|+.||.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|.| +.+.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 344668899999999999999999999999999999999888888766 58999999999999 467899999999999
Q ss_pred EEEcCC---------CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-eEEec----------C
Q 003236 623 VWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC----------Q 682 (837)
Q Consensus 623 IWDl~~---------~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i-~~~~~----------~ 682 (837)
+||+.. .+.....+..|...|..|+..|++.+.|.++++||+|+-+|++..... ..... -
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999985 233456677899999999999999899999999999999999863211 11100 1
Q ss_pred CCeeEEEEecCCC-EEEEEEcCCeEEEEECCCCeEEEEEc-CC----CCCEEEEE-EcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 683 SGATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQ-GH----KNQVHSVC-WNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 683 ~~i~sl~~sp~g~-~llags~dg~I~iwDl~s~~~~~~l~-~h----~~~V~sl~-~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
-...|+.++|... +|++|+.|-..++||.+...+...-. .+ .....|+. |+|.+. ...+|.+..
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn~~~------ 271 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGNLDR------ 271 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCccccccc------
Confidence 2467889999654 57778888999999965321110000 00 01111221 222211 000111100
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 756 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
....++-+.|+|+|..|++.-....|+++|+..++..
T Consensus 272 -----------~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 272 -----------YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred -----------ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 0112456789999988888887789999999877644
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.1e-14 Score=146.49 Aligned_cols=277 Identities=15% Similarity=0.235 Sum_probs=193.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc--
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-- 631 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~-- 631 (837)
-.+..++|++.-..+|++..|-.|++||-.. ++...++ .....|+|++|.|. ++.|++|+..| |.||..+....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4577899999777789999999999999666 5555554 23467999999995 55677776655 89998763211
Q ss_pred -----------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEE
Q 003236 632 -----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILA 699 (837)
Q Consensus 632 -----------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl~~sp~g~~lla 699 (837)
.+....+| .+|+++.|.+||..++-++-.|..|.|||..++.++... ...+++.-+.|+||+.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 12233455 689999999998866655556789999999999888776 45678999999999999999
Q ss_pred EEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce------------eEEEee-
Q 003236 700 AAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE------------CIHELS- 765 (837)
Q Consensus 700 gs~dg~I~iwDl~-s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~------------~i~~~~- 765 (837)
+.-|+..++|... +..+..-.. ..+.|...+|+|+|.+|..+..+.-++|.+....+.. .+..+.
T Consensus 256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 9999999999544 444333333 3458999999999999888877766777664322100 011110
Q ss_pred ----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEECCCCcEEEec--c--CCCCeeEEEEeC---CCC
Q 003236 766 ----C----TGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VNG 822 (837)
Q Consensus 766 ----~----~~~~I~sv~fspdg~~L~sgs~dg--------~I~IwDl~s~~~~~l~--~--h~~~V~sla~sp---dg~ 822 (837)
. -.+++.+++|+|.|.++++.-..+ .|.+||......+.+. + .......|+|+| ++.
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~ 414 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGR 414 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCc
Confidence 1 146789999999999999876544 4677887666555332 1 112245556655 455
Q ss_pred EEEEEECCCcEEEe
Q 003236 823 MVASASHDKCVKIW 836 (837)
Q Consensus 823 ~LaSgs~DG~I~IW 836 (837)
+|..|=..|.|.-|
T Consensus 415 lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 415 LLSIAWSTGRIQRY 428 (445)
T ss_pred EEEEEeccCceEee
Confidence 66666566666543
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=7.1e-16 Score=165.19 Aligned_cols=262 Identities=16% Similarity=0.267 Sum_probs=211.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
-..+.++.+|++|+.|+..|.|..+|..++++...+. -...|.++.|..+..+||++ ....++|||-..- .+..+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~Gt--ElHClk 207 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGT--ELHCLK 207 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCc--EEeehh
Confidence 4568999999999999999999999999999998885 44679999999988888877 5678999997642 356666
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
.| ..|..+.|.|. .++|++++..|.++.-|+.+|+.+..+.. .+.+..++-+|-...+-+|...|+|.+|.....++
T Consensus 208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 54 56899999998 67888999999999999999999988875 45678888899988888999999999999999999
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 717 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 717 ~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
+..+-.|.++|.+|++.++|.|+++++ |..|+|||++... .++++.. ......++||..| +++.+....|.||
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---ccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence 998889999999999999999999999 9999999999873 4444443 4566777888776 5666666689999
Q ss_pred E-CCCCc---EEEeccC--CCCeeEEEEeCCCCEEEEEECCC
Q 003236 796 N-MTENK---TLTLSAH--DKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 796 D-l~s~~---~~~l~~h--~~~V~sla~spdg~~LaSgs~DG 831 (837)
. .-.+. ......| .+.|..+.|.|-...|-.|-..|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 4 32211 1122222 45899999999777666665544
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.6e-15 Score=157.60 Aligned_cols=194 Identities=23% Similarity=0.251 Sum_probs=154.9
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee-
Q 003236 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT- 637 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~- 637 (837)
.+++|+.+|..|++|+.||+++||+......+.....|...|.++.|+||+++|++.+.| ..+||++.++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 689999999999999999999999998888888888899999999999999999999999 899999998743 33222
Q ss_pred -ccccceEEEEEcCCC---Ce-EEEEEeCCCcEEEEECCCCee------eeEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 638 -GHSTTVMSLDFHPSK---ED-LLCSCDNNSEIRYWSINNGSC------AGVFKCQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 638 -~h~~~V~sl~fspdg---~~-llasgs~Dg~I~vwDl~t~~~------i~~~~~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
.....+..+.|+.++ .. +++.....+.|+.||+...+- ...+.....|.+++++.+|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233455667787664 22 333334456677777643222 2222235689999999999999999999999
Q ss_pred EEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003236 707 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s 754 (837)
.||+..+-+.+..++ .|...|+.+.|+||.+++++.+ |..+.|..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999887776665 5999999999999999999987 88888887654
No 204
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=9.1e-14 Score=159.52 Aligned_cols=234 Identities=16% Similarity=0.084 Sum_probs=168.6
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
..|.+||.... ....+..+...+.+.+|+||++.|+.++.+ ..|++||+.++.. ..+..+.+...++.|+|+|+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 46889998644 344555677889999999999999988753 4699999987653 33334445566889999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CC--eEEEEECCCCeEEEEEcCCCCCEE
Q 003236 654 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 654 ~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg--~I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
.++++.+.+| .|++||+.+++..............+|+|+++.|++++. ++ .|+++|+.++..... ..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCcc
Confidence 8887776665 599999998876554443344567899999999888764 34 477778877654332 22334455
Q ss_pred EEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCc
Q 003236 729 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENK 801 (837)
Q Consensus 729 sl~~spdg~~Lasgs-D-g--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d---g~I~IwDl~s~~ 801 (837)
.++|+|||++|+..+ + + .|.+||+.++.. . .+. +......+.|+|||++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~---~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV---R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe---E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 789999999998765 3 2 699999977632 2 222 22234567999999998887764 378899997766
Q ss_pred EEEeccCCCCeeEEEEeC
Q 003236 802 TLTLSAHDKLVSSLAAST 819 (837)
Q Consensus 802 ~~~l~~h~~~V~sla~sp 819 (837)
...+..+.+.+..++|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666677788888886
No 205
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.5e-13 Score=156.08 Aligned_cols=234 Identities=13% Similarity=0.152 Sum_probs=170.2
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
..|++||.+.. ....+..|...+.+.+|+|||+.|+..+. +..|++||+.++.. ..+..+.+.+.+.+|+|||+
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 47888897544 44556678889999999999999988764 46899999987653 44555667788999999999
Q ss_pred eEEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEE
Q 003236 654 DLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 654 ~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
.++++.+.++. |++||+.++................|+|+++.|+..+.. ..|+++|+..+.... +..+...+.
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~ 337 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS 337 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence 88888776665 888899888765544444456678999999998877643 368889987765443 333455677
Q ss_pred EEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEECC
Q 003236 729 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT 798 (837)
Q Consensus 729 sl~~spdg~~Lasgs-D-g--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d------g~I~IwDl~ 798 (837)
...|+|||++|+... + + .|.+||+..+. ...+. ....+....|+|||+.|+..+.+ ..|+++|+.
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 789999999998876 2 2 68888876542 12222 22346778999999998876653 268888988
Q ss_pred CCcEEEeccCCCCeeEEEEeCC
Q 003236 799 ENKTLTLSAHDKLVSSLAASTV 820 (837)
Q Consensus 799 s~~~~~l~~h~~~V~sla~spd 820 (837)
.+....+. ..+.+...+|+|-
T Consensus 413 g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 413 GRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCceEEcc-CCCCccCcccCCC
Confidence 77665544 3455777888763
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=1.3e-12 Score=135.03 Aligned_cols=267 Identities=15% Similarity=0.213 Sum_probs=180.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCC------CeEEEEEcCCC
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD------RTVRVWDTENP 629 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~D------g~I~IWDl~~~ 629 (837)
...+++|+.|...+++|..+| .+||+++..+....-..+.+.+.-+...--.++|+. |+.+ ..|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK- 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence 345699999999999988665 899999876554333333333222222222345544 3332 4799999443
Q ss_pred CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeEEec---CCCeeEEEEecCCCEEEEEE-cCC
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC---QSGATQMRFQPRLGRILAAA-IEN 704 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~~---~~~i~sl~~sp~g~~llags-~dg 704 (837)
+.++.++. ...+|.++.+.++ .+++.- .+.|+||... +-+.++.+.. +.+..+++-......|+.-+ .-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 33454444 6688999999976 244333 6789999987 5566665554 33444444333333344333 358
Q ss_pred eEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeec--CCCceEEEEEeC
Q 003236 705 YISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHP 778 (837)
Q Consensus 705 ~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~--~~~~I~sv~fsp 778 (837)
.|.|.|+...+. ...+..|.+.|.|++++-+|.++|+++ .| .|||||..++ ..+.++.. ....|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987655 477888999999999999999999999 66 6999999998 55555543 346799999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCc---E-----------E-----------EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 779 TFPSLLVIGCYETLELWNMTENK---T-----------L-----------TLSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~---~-----------~-----------~l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
+..+|++++..|+|+||.++... . + .+.-..+...-++|-.+...++..+.||.-
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy 316 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY 316 (346)
T ss_pred CccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence 99999999999999999886522 1 0 111123345556676665566666677754
No 207
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=9.6e-14 Score=145.57 Aligned_cols=285 Identities=13% Similarity=0.137 Sum_probs=211.6
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEECCC
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDK 577 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~H~~~V~sl~fSpdg~~Lasgs~Dg 577 (837)
...+...++|+++|+.|..+++|........ .+-+++.+.. .|...|.|++|....++|++|+.++
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-------------k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVR-------------KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHhh-------------cCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3445556799999999999999954332110 0112233333 4568899999999999999999999
Q ss_pred cEEEEeCCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee--EEeeccccceEEEEEcCCCC
Q 003236 578 KAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~--~~~~~h~~~V~sl~fspdg~ 653 (837)
+|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.......+ ...........++.|+|...
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999999888877742 23489999999999999999999999999998754322 22333456678899999999
Q ss_pred eEEEEEeCCCcEEEEECCCCee-eeEEe----c---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-
Q 003236 654 DLLCSCDNNSEIRYWSINNGSC-AGVFK----C---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK- 724 (837)
Q Consensus 654 ~llasgs~Dg~I~vwDl~t~~~-i~~~~----~---~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~- 724 (837)
.+|++.+..+.+.+||++.... +.... . ......+.|+|.|+.+++.-....-.+||+-+..+...-..|.
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 9999999999999999986432 21111 1 2234678999999999988877777888988754433222332
Q ss_pred ------CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------------------ceeEEEeecCCCceEEEEEe
Q 003236 725 ------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK--------------------GECIHELSCTGNKFHSCVFH 777 (837)
Q Consensus 725 ------~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~--------------------~~~i~~~~~~~~~I~sv~fs 777 (837)
..+.+++|..|-. +++|+ +-.|++|.+..... ...+..+++|...+..+.|+
T Consensus 288 ~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred Ccceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 2466778865544 88888 55899998853110 12345678899999999999
Q ss_pred CCCCEEEEEEcCCeEEEEEC
Q 003236 778 PTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 778 pdg~~L~sgs~dg~I~IwDl 797 (837)
|....|++.+-.+.++||.-
T Consensus 367 ~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 367 QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CCcceEeccchhhheecccc
Confidence 99999999999999999964
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.7e-13 Score=154.85 Aligned_cols=274 Identities=20% Similarity=0.216 Sum_probs=194.6
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg---~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
..-.||+|+++++... +..|.||...++.++..+.+|..+++.+.+.|.. .++++++.||+|++||...+.. +++
T Consensus 20 ~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L-lkt 97 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL-LKT 97 (792)
T ss_pred cccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE-EEE
Confidence 3457899999888776 5689999999999999999999999999998853 4788999999999999998664 555
Q ss_pred eeccccceEEEEEcC---CCCeEEEEEeCCCcE-EEEECCCCeeeeEEe-------------cCCCeeEEEEecCCCEEE
Q 003236 636 FTGHSTTVMSLDFHP---SKEDLLCSCDNNSEI-RYWSINNGSCAGVFK-------------CQSGATQMRFQPRLGRIL 698 (837)
Q Consensus 636 ~~~h~~~V~sl~fsp---dg~~llasgs~Dg~I-~vwDl~t~~~i~~~~-------------~~~~i~sl~~sp~g~~ll 698 (837)
+..+ .++..+.+.| +....+..+..|..+ .....+..+....+. ....-.++.+++.+. +.
T Consensus 98 ~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge-~~ 175 (792)
T KOG1963|consen 98 FDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE-FK 175 (792)
T ss_pred EecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce-EE
Confidence 5433 2344433322 111112122222111 111111111111110 011135566666544 45
Q ss_pred EEEcCCeEEEEECCCCeEEEE----EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC-CCCceeEEEeecCCCceE
Q 003236 699 AAAIENYISILDVETQVCRLK----LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKFH 772 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~----l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s-~~~~~~i~~~~~~~~~I~ 772 (837)
....+..+.+|+..+...... -..|...++|.+++|++++++++. ||.|.+|.--. .......+.+.=|...|.
T Consensus 176 ~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~ 255 (792)
T KOG1963|consen 176 GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVN 255 (792)
T ss_pred EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccc
Confidence 555567788888877541111 123667799999999999999999 99999996443 222345556677889999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+++|+++|.+|++||.++.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|..|.+-
T Consensus 256 ~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 256 SLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred eeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence 9999999999999999999999999999977777888999999999999999999999988763
No 209
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=1.5e-11 Score=136.88 Aligned_cols=261 Identities=12% Similarity=0.126 Sum_probs=182.4
Q ss_pred CeEEEEEcCCCCEEEEEEC----CCcEEEEeCCCC--e--EEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcC
Q 003236 557 KVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE 627 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~----Dg~I~VWd~~t~--~--~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~ 627 (837)
....++++|++++|.++.. ++.|..|++... . .+............++++|++++|+++.. +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3566899999999998876 468999987653 3 33444434456678999999999999875 8999999998
Q ss_pred CCCceeEE--ee-----------ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eee--E--EecCCCeeEE
Q 003236 628 NPDYSLRT--FT-----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG--V--FKCQSGATQM 688 (837)
Q Consensus 628 ~~~~~~~~--~~-----------~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~--~--~~~~~~i~sl 688 (837)
........ .. .......++.|+|+++.++++.-....|++|++.... ... . +....+...+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 75322211 11 1234578999999999888776666789999997654 322 2 2335678999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECC--CCe--EEEEEcC------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC-
Q 003236 689 RFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQG------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS- 754 (837)
Q Consensus 689 ~~sp~g~~llags~-dg~I~iwDl~--s~~--~~~~l~~------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s- 754 (837)
.|+|+++++++.++ ++.|.+|++. ++. .+..+.. .......|+++|||++|+++. ++.|.+|++..
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 99999999888876 5789999888 442 2222321 122678999999999999887 77999999943
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEC--CCCcEEEec--cCCCCeeEEEE
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM--TENKTLTLS--AHDKLVSSLAA 817 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl--~s~~~~~l~--~h~~~V~sla~ 817 (837)
......+..+...+.....++++|+|++|++++.+ +.|.+|++ .+|.+.... ..-....||.|
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 23445666666667778999999999999998864 48888865 566655332 23345666665
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=1.5e-14 Score=156.93 Aligned_cols=207 Identities=14% Similarity=0.132 Sum_probs=166.1
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEE
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~ 647 (837)
..|+.++.||.+.|.+ +.++....+..|.+.|.|-+|+|||.-|+++++||.|++|.-.. ....++.....+|.|++
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEE
Confidence 4688888999999987 66788888999999999999999999999999999999998653 22344455678899999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC
Q 003236 648 FHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 726 (837)
Q Consensus 648 fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~ 726 (837)
|.|+.+.++++.+ +.+.+=.+.... .++--.+++-|.++.|++..+.+++|++|-..+|||.. |..++.-..|+.+
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence 9999988887664 456665565443 44444456668999999999999999999999999975 5666666779999
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 727 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 727 V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
|++++|.|+ +.++.++-.++++=. ...+.|..++|++||..+++|+..|.|.+-
T Consensus 230 ITSva~npd-~~~~v~S~nt~R~~~--------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYNTARFSS--------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeeeeeeecC--------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 666767666666222 234678899999999999999999966543
No 211
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.59 E-value=2.2e-13 Score=150.18 Aligned_cols=237 Identities=15% Similarity=0.231 Sum_probs=171.5
Q ss_pred CCCCEEEE--EECCCcEEEEeCCC-CeEE----EEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCc-----
Q 003236 565 PDGKLLAT--GGHDKKAVLWCTES-FTVK----STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY----- 631 (837)
Q Consensus 565 pdg~~Las--gs~Dg~I~VWd~~t-~~~~----~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~----- 631 (837)
.+.+++|+ .+..|.|-||++.. |++. -.+ .....|+++.|.| |...|++++.||.|++|.+..+..
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM 667 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC
Confidence 34555554 45578999999874 2222 222 2446799999999 788999999999999999876542
Q ss_pred -eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003236 632 -SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISIL 709 (837)
Q Consensus 632 -~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iw 709 (837)
+-..+..|...|+++.|+|-...+|++++.|.+|++||+.+++....+. +.+.|..++|+|+|..+++.|.||+|++|
T Consensus 668 tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy 747 (1012)
T KOG1445|consen 668 TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVY 747 (1012)
T ss_pred CcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEe
Confidence 3467889999999999999888899999999999999999988776665 45679999999999999999999999999
Q ss_pred ECCCCe-EEEEEcCC-CCCEEEEEEcCCCCEEEEEe-CC----eEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCC
Q 003236 710 DVETQV-CRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFP 781 (837)
Q Consensus 710 Dl~s~~-~~~~l~~h-~~~V~sl~~spdg~~Lasgs-Dg----~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~ 781 (837)
+.++++ .+..-.+. ...--.|.|.-||+++++.+ |. .|.+||..+-.. ..+.+.... ...+.--.+.+|..
T Consensus 748 ~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~Ds~ 826 (1012)
T KOG1445|consen 748 EPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYDSN 826 (1012)
T ss_pred CCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCCCc
Confidence 998863 44443332 12334578888999888876 54 788998765431 122221111 11222234566665
Q ss_pred E-EEEEEcCCeEEEEECCCCcEE
Q 003236 782 S-LLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 782 ~-L~sgs~dg~I~IwDl~s~~~~ 803 (837)
. +++|-.|..|++|.+......
T Consensus 827 ~lfltGKGD~~v~~yEv~~esPy 849 (1012)
T KOG1445|consen 827 VLFLTGKGDRFVNMYEVIYESPY 849 (1012)
T ss_pred eEEEecCCCceEEEEEecCCCce
Confidence 4 455566779999998665543
No 212
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=3e-15 Score=169.40 Aligned_cols=270 Identities=19% Similarity=0.225 Sum_probs=201.9
Q ss_pred CccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcE
Q 003236 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (837)
Q Consensus 500 ~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I 579 (837)
..++-..++|.+|+.|..|++|...+. .+....+||.+.|+.++.+.+..++|+++.|..|
T Consensus 196 a~fDrtg~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 196 AIFDRTGRYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred eeeccccceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcccCceE
Confidence 345666789999999999999964433 3456788999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCC-ceeEEee-ccccceEEEEEcCCCCeEE
Q 003236 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD-YSLRTFT-GHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~-~~~-~~~~~~~-~h~~~V~sl~fspdg~~ll 656 (837)
++|.+.++.++..+.+|++.|++|+|+|-. +.+.||++++||.+ ... .+-+... .....+.++-|...+. -+
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~f 331 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD-RF 331 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-cc
Confidence 999999999999999999999999999953 77899999999988 111 0001111 1224455666666655 45
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 003236 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 735 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~-g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd 735 (837)
.+++.|+.-..|.+....+.. ..+.-+.++.+ ..+.+++-.+-.+++|++.++...+.+.+|...+..+.++|-
T Consensus 332 ~Tgs~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf 406 (1113)
T KOG0644|consen 332 LTGSRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF 406 (1113)
T ss_pred ccccCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC
Confidence 589989888888664321110 01111111111 134556667788999999999999999999999999999998
Q ss_pred CCEEEE-Ee-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 736 GEYLAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 736 g~~Las-gs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
+..++- ++ ||.+.|||+-.+. .+.........+....|+++|..++....-|.++|+..-.++
T Consensus 407 n~ri~msag~dgst~iwdi~eg~---pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGI---PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCC---cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 776654 34 9999999998874 333333346778889999999999999988999998875544
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=3.6e-13 Score=146.87 Aligned_cols=244 Identities=15% Similarity=0.195 Sum_probs=164.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE----EEEeccCCCCeEEEEE-----cCCCCEEEEEeCCCeEEEEEcC
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRF-----SPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~----~~~l~~h~~~I~~l~f-----spdg~~Latgs~Dg~I~IWDl~ 627 (837)
.++...++-.|++|+..-. ..+++|+...+.. +....-.....+|-+| .+++--|+.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3555566667777766533 4688888764221 1111111222344445 2345568888888889998876
Q ss_pred CCCceeEEe----eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 003236 628 NPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 628 ~~~~~~~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d 703 (837)
..+. .+.+ .-....|+|+.|-|.++.+|+.+-.+|.+++||... .......+....+++..+......
T Consensus 204 ~~~~-sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 NFEV-SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hhHH-HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5221 1111 112378999999999888998999999999998821 111112222223344444333221
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+. .+..++..+..-.+.|+.++|+|||++||+.+ ||.+||||+.+. +.+...+.--+...||+|+|||++
T Consensus 276 sk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 SK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cc------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 11 11134444444456899999999999999999 999999999876 444444444577899999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEe
Q 003236 783 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 818 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~s 818 (837)
|++|+.|.-|.||.+..++++ +-.+|...|+.|+|.
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999998 667999999999998
No 214
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=4.3e-13 Score=153.58 Aligned_cols=235 Identities=14% Similarity=0.058 Sum_probs=159.6
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
..|.++|.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.++.. ..+....+.+.+..|+||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 457777764 44444555677889999999999999887753 3699999987653 23333445667899999999
Q ss_pred eEEEEEeCCCcEEEE--ECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCe--EEEEECCCCeEEEEEcCCCCCEE
Q 003236 654 DLLCSCDNNSEIRYW--SINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY--ISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 654 ~llasgs~Dg~I~vw--Dl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~--I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
.++++.+.++...+| |+..+................|+|+|+.|+..+. ++. |+++++.++...... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 888887778765555 5555543332223334567889999999887664 344 444455555432222 2233345
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 003236 729 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 801 (837)
Q Consensus 729 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~ 801 (837)
..+|+|||++|+..+ ++ .|++||+.++.. . .+.. ........|+|+++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~---~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV---T-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe---E-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 678999999998776 33 699999987632 1 2222 22346789999999999888655 57777885444
Q ss_pred EEEeccCCCCeeEEEEeCC
Q 003236 802 TLTLSAHDKLVSSLAASTV 820 (837)
Q Consensus 802 ~~~l~~h~~~V~sla~spd 820 (837)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 4456667788888899873
No 215
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.8e-13 Score=158.70 Aligned_cols=248 Identities=15% Similarity=0.210 Sum_probs=177.9
Q ss_pred CCCCCeEEEEEcC--CCCEEEEEECCCcEEEEeCC-----CCeEEEEecc-------CCCCeEEEEEcCCCCEEEEEeCC
Q 003236 553 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSAD 618 (837)
Q Consensus 553 ~H~~~V~sl~fSp--dg~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~D 618 (837)
.-...|+.+.+-. |..+|++|+.||.|+||+-. +.+.+..+.+ ..+.=.-+.|.....+|++++.-
T Consensus 1107 ~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~ 1186 (1387)
T KOG1517|consen 1107 FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV 1186 (1387)
T ss_pred CCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe
Confidence 3446789998876 55689999999999999532 2233333221 11112445677766677777778
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---eeeEEec-CC--CeeEEEEec
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFKC-QS--GATQMRFQP 692 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---~i~~~~~-~~--~i~sl~~sp 692 (837)
..|+|||+.....+...-.+....|+++.-+-.+..++++|..||.|++||.+... .+..++. .. +|..+.+.+
T Consensus 1187 r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence 89999999986655555556667788888776666789899999999999998643 2333332 22 388888888
Q ss_pred CCC-EEEEEEcCCeEEEEECCCCeE--EEEEcCCC---CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEE---
Q 003236 693 RLG-RILAAAIENYISILDVETQVC--RLKLQGHK---NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE--- 763 (837)
Q Consensus 693 ~g~-~llags~dg~I~iwDl~s~~~--~~~l~~h~---~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~--- 763 (837)
.|- .|++|+.+|.|++||++.... ...+..|. +.++++..++....+|+|+.+.|+||++..... ..+..
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l-~~~k~n~~ 1345 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQL-NIIKYNPG 1345 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhh-cccccCcc
Confidence 654 599999999999999997422 22222232 359999999999999999999999999875422 11111
Q ss_pred -eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 764 -LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 764 -~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
.....+.+.+++|+|..-.+++|..|.+|.||......
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 11123567999999999999999999999999876543
No 216
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2.1e-13 Score=145.60 Aligned_cols=191 Identities=14% Similarity=0.110 Sum_probs=149.2
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 003236 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 644 ~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~ 722 (837)
.+++|+.+|. .+++++.||++|+|+... ........++..|.++.|+||++.|++.+.| ..+||+++++.++.....
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6789998866 777999999999999554 4445556678899999999999999999999 999999999977666553
Q ss_pred --CCCCEEEEEEcCCC---CEEEEEe---CCeEEEEEcCCCCCce--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003236 723 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 723 --h~~~V~sl~~spdg---~~Lasgs---Dg~I~IwDl~s~~~~~--~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I 792 (837)
....+..+.|+.|+ .+++.+. -+.|+.||+....... ...........|++++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23356678888776 3333333 4577777775543211 222233345689999999999999999999999
Q ss_pred EEEECCCCcEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 793 ELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 793 ~IwDl~s~~~~~--l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.||+..+.+.+. ...|...|+.+.|+||.+++++.+.|..+.|.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 999999998874 45899999999999999999998888877653
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=3.4e-13 Score=139.26 Aligned_cols=227 Identities=18% Similarity=0.291 Sum_probs=177.0
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 003236 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 593 l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl 670 (837)
+.....+|+|.+|++|...+|++.....|.||...... ....++..|...|++|+|.|..++++ +|+.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCcccccc
Confidence 33456789999999999999999999999999988765 35688999999999999999977555 9999999999998
Q ss_pred -CCCe---eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 671 -NNGS---CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 671 -~t~~---~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~----~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
..++ .+..++++...+++.|+|.++.|++|+....|.||-.+...- ...-+.+.+.|+++.|+|++-+|++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 4433 233455678999999999999999999999999887764321 22334577889999999999999999
Q ss_pred e-CCeEEEEEcC-----CCC----------CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--EEE
Q 003236 743 S-DELVRVWSIG-----SGS----------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLT 804 (837)
Q Consensus 743 s-Dg~I~IwDl~-----s~~----------~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--~~~ 804 (837)
+ |+..+||..- ... ....+.++....+.+..+.|+|+|..|+..+.|..|.+-|..... ...
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccc
Confidence 9 9999998742 110 012233444567889999999999999999999999999987765 223
Q ss_pred eccCCCCeeEEEEeCC
Q 003236 805 LSAHDKLVSSLAASTV 820 (837)
Q Consensus 805 l~~h~~~V~sla~spd 820 (837)
.....-+..++.|-.+
T Consensus 245 ~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISE 260 (361)
T ss_pred hhhccCCceeeEeecC
Confidence 3333356666666543
No 218
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.56 E-value=4.9e-13 Score=141.87 Aligned_cols=290 Identities=13% Similarity=0.122 Sum_probs=188.9
Q ss_pred EEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC
Q 003236 486 MFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP 565 (837)
Q Consensus 486 ~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp 565 (837)
..+.-..+..++...++.+...++++|+.++.+.+|...+........ -.......+.....+++|...|..++|+|
T Consensus 57 y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~---e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 57 YLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT---EADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred EeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc---hhhhCccceEEEEEecccccchhhhhccC
Confidence 334444466666777777778899999999999999776422110000 00011234556778899999999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecccc-ceE
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 644 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~-~V~ 644 (837)
|+.++++++.|..+++||+..|.....+..|...|..++|.|-+.++++-+.|...+++.+..... ...|.. .+.
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~----~~~~~~~~m~ 209 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV----IKRHGLDIMP 209 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee----eeeeeeeEee
Confidence 999999999999999999999999999999999999999999999999999998777777654221 111110 000
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc----C-----CeEEEEECCC-C
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI----E-----NYISILDVET-Q 714 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~----d-----g~I~iwDl~s-~ 714 (837)
..++.+. .....++|.=++.+ .-...++|+|+|..+++.+. . +..++|+-.. .
T Consensus 210 ~~~~~~~---------e~~s~rLfhDeTlk--------sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~ 272 (434)
T KOG1009|consen 210 AKAFNER---------EGKSTRLFHDETLK--------SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK 272 (434)
T ss_pred ecccCCC---------CcceeeeeecCchh--------hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc
Confidence 1111110 01112222211111 22345666777766665432 1 2234444332 2
Q ss_pred eEEEEEcCCCCCEEEEEEcC------------------CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 715 VCRLKLQGHKNQVHSVCWNT------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 715 ~~~~~l~~h~~~V~sl~~sp------------------dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
++...+.....++..+.|+| -+..+++++.+.|+|||..+.....++ -..|-..|+.++|
T Consensus 273 rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v--~nihy~~iTDiaw 350 (434)
T KOG1009|consen 273 RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVV--DNIHYSAITDIAW 350 (434)
T ss_pred CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEE--eeeeeeeecceee
Confidence 34444444444444444443 344567777889999999876432332 3346788999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 777 HPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 777 spdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
+++|..+++.+.||...+..++..+
T Consensus 351 s~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 351 SDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cCCCcEEEEeccCCceEEEEEcchh
Confidence 9999999999999977666655544
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.7e-13 Score=143.32 Aligned_cols=261 Identities=15% Similarity=0.204 Sum_probs=199.0
Q ss_pred CCCCeEEEEEcCCCC--EEEEEECCCcEEEEeCCCCeEEEE------eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 554 STSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKST------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 554 H~~~V~sl~fSpdg~--~Lasgs~Dg~I~VWd~~t~~~~~~------l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
-...|+.++|--|++ .|...+.|..+..+++....+... .......|..++.. ...|++|-.+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 345678888877665 344444666777777665554433 33455677777665 34788889999999999
Q ss_pred cCCCC---ceeEEeeccccceEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCeeeeEEec----------CCCeeEEEE
Q 003236 626 TENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKC----------QSGATQMRF 690 (837)
Q Consensus 626 l~~~~---~~~~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~vwDl~t~~~i~~~~~----------~~~i~sl~~ 690 (837)
...+. ..+..+..+ ..+..+.-++...+++++|+.. ..+.+||+...+.+..-+. +-.++.+.|
T Consensus 132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 98543 122333322 5577777778888899999988 8999999998866654432 223678889
Q ss_pred ecC--CCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE-Eee
Q 003236 691 QPR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH-ELS 765 (837)
Q Consensus 691 sp~--g~~llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~-~~~ 765 (837)
.+. ...|++++.-+.|++||.+.+ +++..|.-.+.+|+++...|++++|+++. -+.+..||++.+ .... .+.
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~k 287 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGLK 287 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeeccccC
Confidence 887 788999999999999999976 68888888889999999999999999999 899999999988 3333 377
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCC
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 820 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spd 820 (837)
+-.+.|+++..+|..+++++++-|..|+|+|+.+.+++.-..-...+++|-+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 7789999999999999999999999999999999777644444556677766543
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.3e-12 Score=149.76 Aligned_cols=223 Identities=17% Similarity=0.170 Sum_probs=152.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWD 625 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWD 625 (837)
.+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.++...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 344677889999999999999887743 359999999886653 333445677899999999886 466788766666
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE--CCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS--INNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD--l~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d 703 (837)
++........+..+...+....|+|||..+++++..++...+|. +.++................|+|+|++|+..+.+
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~ 348 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV 348 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEcc
Confidence 54322224555556666678899999998887766566666664 4555433332222334567899999999887765
Q ss_pred C---eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 704 N---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 704 g---~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
+ .|.+||+.++..... .. ......+.|+|||++|+.++ .+ .+.+.++. + .....+..+.+.+...+|
T Consensus 349 ~g~~~I~v~d~~~g~~~~l-t~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~w 422 (427)
T PRK02889 349 GGAFKLYVQDLATGQVTAL-TD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSW 422 (427)
T ss_pred CCcEEEEEEECCCCCeEEc-cC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCcc
Confidence 4 699999988765433 22 23446789999999988877 33 46666663 2 233344445566777777
Q ss_pred eCC
Q 003236 777 HPT 779 (837)
Q Consensus 777 spd 779 (837)
+|-
T Consensus 423 sp~ 425 (427)
T PRK02889 423 GPF 425 (427)
T ss_pred CCC
Confidence 764
No 221
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2e-12 Score=142.35 Aligned_cols=267 Identities=19% Similarity=0.290 Sum_probs=175.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-----eC-----CCeEEEEE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SA-----DRTVRVWD 625 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-----s~-----Dg~I~IWD 625 (837)
.++...++|++|+++|.+. +..|+|++..++..+.+...- .++++.|+|.+.+|.|= .. ...+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 3477889999999988875 578999999888655444322 78999999999998762 11 23577999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-------------------
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------------------- 686 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~------------------- 686 (837)
+++ ......+..-...-+++.|+.|.. + ++--..+.+.+|++.+.+.+...-+..+++
T Consensus 112 vet-~~~~s~~q~k~Q~~W~~qfs~dEs-l-~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 112 VET-GVQRSQIQKKMQNGWVPQFSIDES-L-AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred ecc-ceehhheehhhhcCcccccccchh-h-hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 998 333333332222225777777743 2 122224567777665533221111122222
Q ss_pred ---------------------------------EEEEecCCCEEEE-EEc--C---------CeEEEEECCCCeEEEEEc
Q 003236 687 ---------------------------------QMRFQPRLGRILA-AAI--E---------NYISILDVETQVCRLKLQ 721 (837)
Q Consensus 687 ---------------------------------sl~~sp~g~~lla-gs~--d---------g~I~iwDl~s~~~~~~l~ 721 (837)
.+.|++.+.-|++ ++. | ..++++++....+...+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 2344444433222 211 1 246666666434444443
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEE
Q 003236 722 GHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELW 795 (837)
Q Consensus 722 ~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~Iw 795 (837)
..++|++++|+++++-++++. -.++.|||++.. .+.. ...++-.++-|+|.|++|+.+|.++ .|.||
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 478999999999998777765 568999998653 3433 3467788999999999999998864 89999
Q ss_pred ECCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEEC------CCcEEEeC
Q 003236 796 NMTENKTLT-LSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK 837 (837)
Q Consensus 796 Dl~s~~~~~-l~~h~~~V~sla~spdg~~LaSgs~------DG~I~IWd 837 (837)
|+.+.+++. +... .-+-+.|+|||.+|+|+.. |+.++||+
T Consensus 342 Dv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 342 DVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred eccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 999977773 3333 2345799999999999874 78899995
No 222
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.55 E-value=4.4e-11 Score=133.16 Aligned_cols=268 Identities=13% Similarity=0.169 Sum_probs=183.7
Q ss_pred EEEEECC----CcEEEEeC--CCCeEEEEe-ccCCCCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCcee---EE
Q 003236 570 LATGGHD----KKAVLWCT--ESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSL---RT 635 (837)
Q Consensus 570 Lasgs~D----g~I~VWd~--~t~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~----Dg~I~IWDl~~~~~~~---~~ 635 (837)
+++|+.+ +.|++|++ ++++....- .........++++|++++|+++.. ++.|..|++......+ ..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566665 68988877 455443221 123455678999999999999887 5799999988752112 22
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeE---Ee-----------cCCCeeEEEEecCCCEEEEE
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK-----------CQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~---~~-----------~~~~i~sl~~sp~g~~llag 700 (837)
..........++++|++..++++...+|.|.++++.. +..... +. ......++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 2223455678999999998888888899999999987 443332 21 12457899999999999888
Q ss_pred Ec-CCeEEEEECCCCe--E--EEEEc-CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecC----
Q 003236 701 AI-ENYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT---- 767 (837)
Q Consensus 701 s~-dg~I~iwDl~s~~--~--~~~l~-~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~---- 767 (837)
.. ...|.+|++.... . ...+. ......+.++|+|+++++++.. ++.|.+|++... .....+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 76 4689999987654 2 22222 3456788999999999998877 889999999822 122333333321
Q ss_pred --CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC--CCcEE---EeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003236 768 --GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 837 (837)
Q Consensus 768 --~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~--s~~~~---~l~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWd 837 (837)
......++++|||++|+++.. .+.|.+|++. ++++. .+.........++++|+|++|++++ .++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 125788999999999998875 4589999983 34443 2333345589999999999999887 556888874
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.4e-12 Score=149.40 Aligned_cols=220 Identities=17% Similarity=0.162 Sum_probs=154.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCC--eEEEE
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADR--TVRVW 624 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~---Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg--~I~IW 624 (837)
+..+...+.+.+|||||+.|+..+. +..|++|++.+++.... ....+.+..++|+|||+.|+.. +.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 4456678999999999999887643 35799999988764432 2233445678999999988865 4444 58999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~ 702 (837)
|+.++. ...+..+...+....|+|+++.++++...++. |+++|+.++................|+|+|+.|+..+.
T Consensus 273 d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 998765 34444455677899999999988777665554 55557776655443333344567899999999988765
Q ss_pred C---CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 703 E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 703 d---g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
+ ..|.+||+.++.... +.. ........|+|||++|+.++ ++ .+.++++... ....+..+...+...+
T Consensus 351 ~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----~~~~l~~~~~~~~~p~ 424 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPA 424 (429)
T ss_pred cCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC----CeEECccCCCCcCCcc
Confidence 4 368899998876443 332 12345678999999998887 55 4777777443 3445556677788888
Q ss_pred EeCC
Q 003236 776 FHPT 779 (837)
Q Consensus 776 fspd 779 (837)
|+|-
T Consensus 425 Wsp~ 428 (429)
T PRK03629 425 WSPY 428 (429)
T ss_pred cCCC
Confidence 8873
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.54 E-value=8.2e-13 Score=137.31 Aligned_cols=277 Identities=17% Similarity=0.309 Sum_probs=189.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----EEEEeccCC------------CCeEEEEEcCCC--CEEEEE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLATS 615 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h~------------~~I~~l~fspdg--~~Latg 615 (837)
.+-|.+|.|..+|.+||||..+|.|.+|.-+... ....+..|. ..|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568999999999999999999999999643221 233343332 458899999864 467778
Q ss_pred eCCCeEEEEEcCCCCce----------------------------------eEE-eeccccceEEEEEcCCCCeEEEEEe
Q 003236 616 SADRTVRVWDTENPDYS----------------------------------LRT-FTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~~~----------------------------------~~~-~~~h~~~V~sl~fspdg~~llasgs 660 (837)
..|++|++|.+...... .+. -..|+..|.+|.++.|...++ +++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SAD 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SAD 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ecc
Confidence 89999999987643211 111 135888899999999987665 554
Q ss_pred CCCcEEEEECCCCe-eeeEEec--------CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE------EEE-----
Q 003236 661 NNSEIRYWSINNGS-CAGVFKC--------QSGATQMRFQPRL-GRILAAAIENYISILDVETQVC------RLK----- 719 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~-~i~~~~~--------~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~------~~~----- 719 (837)
|-.|.+|+++--. +...... ..-|++..|+|.. +.++..+..|.|++.|++.... +..
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 8899999987432 2222221 1237888999964 5566777889999999984311 111
Q ss_pred -----EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC---------------CceEEEEEeCC
Q 003236 720 -----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG---------------NKFHSCVFHPT 779 (837)
Q Consensus 720 -----l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~---------------~~I~sv~fspd 779 (837)
|.+--..|..+.|+.+|+|+++-.--+|+|||+.... .++.++..|. ..-..|+|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 1112246788999999999998777899999996543 3333333332 12356899999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE--Eec--------------------cC-------------CCCeeEEEEeCCCCEE
Q 003236 780 FPSLLVIGCYETLELWNMTENKTL--TLS--------------------AH-------------DKLVSSLAASTVNGMV 824 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~~~~--~l~--------------------~h-------------~~~V~sla~spdg~~L 824 (837)
+.++++|+..+.+++|++..|... ++. +. ...|...+|+|..+.|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996544321 000 00 1124456899999999
Q ss_pred EEEECCCcEEEe
Q 003236 825 ASASHDKCVKIW 836 (837)
Q Consensus 825 aSgs~DG~I~IW 836 (837)
|.+.... ++||
T Consensus 421 a~aatnn-lyif 431 (433)
T KOG1354|consen 421 AVAATNN-LYIF 431 (433)
T ss_pred eeeecCc-eEEe
Confidence 8887654 5554
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1.1e-12 Score=150.71 Aligned_cols=221 Identities=19% Similarity=0.188 Sum_probs=155.7
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCC--eEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg--~I~ 622 (837)
+.+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.+| .|+
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 4455677789999999999999988743 469999998876543 333455566889999999775 445555 599
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llag 700 (837)
+||+.++. +..+..+.......+|+|++..++++...+|. |+++|+.+++..............+|+|++++|+..
T Consensus 276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 99998765 44555565566789999999988877665655 777788776654433333345578999999999887
Q ss_pred EcCC---eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 701 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 701 s~dg---~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D-g--~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
+.++ .|.+||+.++... .+. +......+.|+|||++|+..+ + + .|.++++... ....+..+.+.+..
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~ 427 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVRE 427 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCC
Confidence 6543 6999999887655 333 333455779999999888766 2 2 6778887543 33344444556666
Q ss_pred EEEeC
Q 003236 774 CVFHP 778 (837)
Q Consensus 774 v~fsp 778 (837)
.+|+|
T Consensus 428 p~wsp 432 (433)
T PRK04922 428 PAWSP 432 (433)
T ss_pred CccCC
Confidence 77776
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=8.3e-13 Score=144.09 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=130.7
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeEEEEe----ccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCC--------
Q 003236 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD-------- 630 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~~~~l----~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~-------- 630 (837)
.+++--|++|-.-|.|.+.|....+..+.+ .-....|+|+.|.|. ...++++-.+|.+++||.+...
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 345556777877888988886552222111 123478999999994 4566677789999999764110
Q ss_pred -------------------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEE
Q 003236 631 -------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 690 (837)
Q Consensus 631 -------------------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~ 690 (837)
.++..+..-.+.|..++|+|||. +||+.+.||.++|||..+.+.+...+. -++..|++|
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW 340 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW 340 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence 11112222345788999999877 666888999999999998877766553 578999999
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC
Q 003236 691 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 734 (837)
Q Consensus 691 sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp 734 (837)
+|||++|++|++|.-|.||.+...+.+..-.+|+++|..|+|+|
T Consensus 341 SPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 341 SPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999999999999999999999999999999999997
No 227
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=3.2e-12 Score=145.91 Aligned_cols=232 Identities=16% Similarity=0.132 Sum_probs=161.9
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~ 653 (837)
..|.++|..... ...+..+...+.+.+|+|||++|+.++.+ ..|++||+.++.. ..+..+...+.+++|+|+++
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 368888876443 34455577789999999999999987754 4899999987653 33444556677899999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEE
Q 003236 654 DLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 654 ~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-g--~I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
.++++.+.++ .|++||+.++................|+|+++.|+.++.. + .|+++|+.+++.. .+..+...+.
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 8887776554 5999999887655444433445577899999988877653 2 6888898876543 3444556677
Q ss_pred EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCc
Q 003236 729 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK 801 (837)
Q Consensus 729 sl~~spdg~~Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~ 801 (837)
.+.|+|++++|+.++ ++ .|.+||+.++.. ..+.. ........|+|++.+|++.+.++ .+++++.....
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 889999999998887 44 788999877521 12221 12234568999999998887765 56676765544
Q ss_pred EEEeccCCCCeeEEEE
Q 003236 802 TLTLSAHDKLVSSLAA 817 (837)
Q Consensus 802 ~~~l~~h~~~V~sla~ 817 (837)
...+..+.+.+..++|
T Consensus 401 ~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 401 RARLPLGNGDVREPAW 416 (417)
T ss_pred eeECCCCCCCcCCCCC
Confidence 4444444555555555
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=1.1e-12 Score=138.84 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=184.2
Q ss_pred CCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCcee-----EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEE
Q 003236 596 HTQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668 (837)
Q Consensus 596 h~~~I~~l~fspdg--~~Latgs~Dg~I~IWDl~~~~~~~-----~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vw 668 (837)
....|..++|..++ ..|+.++.|-.+..+++......- .........|..++.. +..|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA---DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc---CCEEEEEecCCcEEEE
Confidence 34567777776553 345555566667777766544311 1344456677777765 2256688889999999
Q ss_pred ECCCCe----eeeEEecCCCeeEEEEecCCCEEEE-EEcC--CeEEEEECCCCeEEEEEcCC---------CCCEEEEEE
Q 003236 669 SINNGS----CAGVFKCQSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGH---------KNQVHSVCW 732 (837)
Q Consensus 669 Dl~t~~----~i~~~~~~~~i~sl~~sp~g~~lla-gs~d--g~I~iwDl~s~~~~~~l~~h---------~~~V~sl~~ 732 (837)
..+.+. .+..+....++..+.-++...+|++ |+.+ +.+.|||++..+.+..-+.- .-+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998543 3445555677888888887776665 7777 78999999988766654432 225778899
Q ss_pred cCC--CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--Eecc
Q 003236 733 NTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSA 807 (837)
Q Consensus 733 spd--g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~ 807 (837)
-+. ...|++++ -+.|++||.+... .++..+......++++...|++++|+++...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 78888888 8999999999765 677788888999999999999999999999999999999999988 4778
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 808 HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 808 h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..+.|++|..+|...+|++|+-|..|+|+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 899999999999999999999999999997
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=6.4e-12 Score=144.39 Aligned_cols=204 Identities=13% Similarity=0.176 Sum_probs=148.8
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
..|.+||.+... .+.+..|...+.+.+|+|||..++++... +..|++||+.+++..........+....|+|+|+.
T Consensus 182 ~~l~~~d~dg~~--~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGAN--VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCC--cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 378888886543 45667788899999999999877766543 46899999998876555445566778999999998
Q ss_pred EEEE-EcCC--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCC
Q 003236 697 ILAA-AIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 697 llag-s~dg--~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
|+.. ..++ .|++||+.++... .+..+.....+..|+|||+.|+..+ ++ .|++||+.++. ...+.....
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCC
Confidence 7654 4444 5888899887653 4555666677899999999988877 33 68888877652 222333345
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 770 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
.+....|+|+|+.|+....++ .|.+||+.++....+. ....+..+.|+|||++|+..+.+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEcc
Confidence 566789999999998876543 6889998766544332 33457789999999988776543
No 230
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=8.7e-12 Score=143.14 Aligned_cols=234 Identities=15% Similarity=0.051 Sum_probs=163.5
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
.|.++|.+.... ..+..+...+...+|+|||+.|+..+.+ ..|++||+.++.. ..+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 477788775544 4455577789999999999999877654 3699999987653 333334445667899999998
Q ss_pred EEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEEE
Q 003236 655 LLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 729 (837)
Q Consensus 655 llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~~~~~~l~~h~~~V~s 729 (837)
++++.+.++ .|++||+.+++...............|+|+++.++..+.. ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 6888999988765544444456678899999988877643 368888888776433222 2233446
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 003236 730 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 802 (837)
Q Consensus 730 l~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~ 802 (837)
..|+|||++|+..+ ++ .|.+||+.++.. ..+ .. ........|+|+|+.|+..+.++ .|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 78999999998876 33 588899887632 222 21 11223568999999998877653 688888876655
Q ss_pred EEeccCCCCeeEEEEeCC
Q 003236 803 LTLSAHDKLVSSLAASTV 820 (837)
Q Consensus 803 ~~l~~h~~~V~sla~spd 820 (837)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 556566677888888863
No 231
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.50 E-value=2.5e-11 Score=135.57 Aligned_cols=263 Identities=10% Similarity=0.055 Sum_probs=172.3
Q ss_pred CEE-EEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 568 KLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 568 ~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
+++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+. +..+.. .....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VATIKV-GGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEEEE--SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEEEec-CCCcceE
Confidence 344 4455689999999999999999976555445678999999999999999999999998774 555553 3456889
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC--------CCeeEEEEecCCCEEEEEEcC-CeEEEEECCCCeEE
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--------SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCR 717 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--------~~i~sl~~sp~g~~llags~d-g~I~iwDl~s~~~~ 717 (837)
++++||+++++++...+.+.++|.++.+.+..+... ..+..+..++....+++.-.| +.|.+.|....+.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 999999999989889999999999999999887642 356778888888877766665 89999998765322
Q ss_pred -EEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec----CCCceEEEEEeCC----------C
Q 003236 718 -LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPT----------F 780 (837)
Q Consensus 718 -~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~sv~fspd----------g 780 (837)
..............|+|+++|++++. ++.|-++|..++ +.+..+.. |..+...+ .+|. +
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLG 239 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSS
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccc-cCCCcceEEeecccc
Confidence 22333456778899999999988776 779999999876 33333321 22222221 2222 2
Q ss_pred CEEEEEEcCCeEEEEECCCCcEEE-eccCCCCeeEEEEeCCCCEEEEE----ECCCcEEEeC
Q 003236 781 PSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK 837 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~~~~~-l~~h~~~V~sla~spdg~~LaSg----s~DG~I~IWd 837 (837)
...++.-..+.+.+||..+.+.+. +...... ..+..+|++++|.+. ...+.|.|+|
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 333333334456678888888884 4444444 778889999999988 3447788775
No 232
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=8.7e-12 Score=129.00 Aligned_cols=231 Identities=13% Similarity=0.174 Sum_probs=168.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee-EEeeccccceEEEEEcCCCCeEEEEEeCC------CcEEEEECC
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN 671 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~-~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~ 671 (837)
...+++|+.|...++++..+| .+||+++--+... +.+....-.+..+-|- .+.+.+.|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999988777 7999987522211 1111111222222232 23444455433 479999988
Q ss_pred CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEcC--CCCCEEEEEEcCCCCEEEEEe--CCe
Q 003236 672 NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS--DEL 746 (837)
Q Consensus 672 t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s-~~~~~~l~~--h~~~V~sl~~spdg~~Lasgs--Dg~ 746 (837)
..+++..+....+|..+.+.++ .++.-.++.|+||...+ .+.++.+.. ....+.+++-..+..+|+.-+ -|.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 8899999999999999999886 44555679999999874 455555543 233455555444556777655 789
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-Eec--cCCCCeeEEEEeCCCC
Q 003236 747 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNG 822 (837)
Q Consensus 747 I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~s~~~~-~l~--~h~~~V~sla~spdg~ 822 (837)
|.|-|+...... .-..+..|...|.+++++-+|..+++++..| -|+|||..+|..+ .+. .....|.+|+|||+..
T Consensus 161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS 239 (346)
T ss_pred EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence 999999876331 3456788999999999999999999999999 5899999999987 332 3346799999999999
Q ss_pred EEEEEECCCcEEEe
Q 003236 823 MVASASHDKCVKIW 836 (837)
Q Consensus 823 ~LaSgs~DG~I~IW 836 (837)
+||++|+-|+|+||
T Consensus 240 ~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 240 WLAVSSDKGTLHIF 253 (346)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999999997
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.48 E-value=5.2e-14 Score=151.09 Aligned_cols=231 Identities=15% Similarity=0.173 Sum_probs=190.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i 676 (837)
.-.-+.+.|+.+|++|+.|+..|.|-.+|..+... .....-...|.++.|..+.. +++.+- ...++|||-. |..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v~Etv~Dv~~LHneq-~~AVAQ-K~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINVMETVRDVTFLHNEQ-FFAVAQ-KKYVYVYDNN-GTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccccee--eeeeehhhhhhhhhhhcchH-HHHhhh-hceEEEecCC-CcEE
Confidence 33457889999999999999999999999998663 22223456788999987744 554443 6789999966 7777
Q ss_pred eEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 677 GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 677 ~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
..++....+..+.|.|..-.|++++..|.+...|+.+|+.+..+....+.+..++-+|-+..+-+|. .|+|.+|...+.
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 7788789999999999988888888899999999999999999988888999999999999998888 999999998776
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 756 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
+.+..+-+|.++|.++++.++|.++++.+.|..|+|||++....+.......+...+++|..| +++++....|.|
T Consensus 284 ---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 284 ---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred ---chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeee
Confidence 677778899999999999999999999999999999999987755222224567788888655 444555567889
Q ss_pred eC
Q 003236 836 WK 837 (837)
Q Consensus 836 Wd 837 (837)
|.
T Consensus 359 w~ 360 (545)
T KOG1272|consen 359 WK 360 (545)
T ss_pred eh
Confidence 84
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.47 E-value=2.6e-13 Score=140.15 Aligned_cols=221 Identities=17% Similarity=0.223 Sum_probs=161.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec
Q 003236 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (837)
Q Consensus 602 ~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~ 681 (837)
-++|+|+|+++|+++.- .+.|-|.++-.. ..+...-..|.-|.|..+..++++....++.|.+|++...+-...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH--HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 46799999999999766 788888876442 222223467888999999999999999999999999998887777765
Q ss_pred -CCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC
Q 003236 682 -QSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 757 (837)
Q Consensus 682 -~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~ 757 (837)
..++..++|+|+|+.|+..+ .+-.|.+|.+.+.+.... .-.+..+..++|+|||++.+.++ |. .-.+.+...+.
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDC-kdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDC-KDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccH-HHHHHHHhhHH
Confidence 56799999999998776655 588999999998766543 22345678999999999999988 33 22222222222
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 758 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 758 ~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
...+..+....-..+.+.|+|||..|++ ||---.-.+....-.-.|..++|+|.+++|+.|+.|+.++|-
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhh
Confidence 2444555555667788999999986554 543222222222333568899999999999999999998874
No 235
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.4e-11 Score=141.67 Aligned_cols=233 Identities=14% Similarity=0.089 Sum_probs=158.9
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++. ..+...........|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 577778665443 3455567789999999999998877543 2688999987653 222222334457899999998
Q ss_pred EEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEEEcCCCCCEEE
Q 003236 655 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS 729 (837)
Q Consensus 655 llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~~~~~~l~~h~~~V~s 729 (837)
++++.+.++. |++||+.+++...............|+|+++.|+..+.. ..|+++|+.+++..... .+......
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 8888777775 888899887765544444456778999999988876642 35777888877644322 12233445
Q ss_pred EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcE
Q 003236 730 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT 802 (837)
Q Consensus 730 l~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~ 802 (837)
.+|+|||++|+..+ ++ .|.++|+.++.. ..+... .......|+|+|+.|+..+.++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 79999999988876 34 566677776632 112211 1223458999999988876654 488888865555
Q ss_pred EEeccCCCCeeEEEEeC
Q 003236 803 LTLSAHDKLVSSLAAST 819 (837)
Q Consensus 803 ~~l~~h~~~V~sla~sp 819 (837)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666667788888887
No 236
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.46 E-value=8.6e-12 Score=147.16 Aligned_cols=251 Identities=17% Similarity=0.230 Sum_probs=173.0
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCc------eeEEeeccccceEEEEEcCCCCe
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~------~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
|+. .|..+..+..|...|..++.+++. .+++|||.||+|++||...-.. ...++......+.++...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 553 468888899999999999998764 9999999999999999864221 12344445678999999988775
Q ss_pred EEEEEeCCCcEEEEECCCCe-------eeeEEec--CCCee-EEEEecC-CC-EEEEEEcCCeEEEEECCCCeEEEEEcC
Q 003236 655 LLCSCDNNSEIRYWSINNGS-------CAGVFKC--QSGAT-QMRFQPR-LG-RILAAAIENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~-------~i~~~~~--~~~i~-sl~~sp~-g~-~llags~dg~I~iwDl~s~~~~~~l~~ 722 (837)
++ .++.||.|.+.++.... +.+.... .+.+. .-+|... .. .++.+..-+.|..||++......+++.
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 55 55889999999987521 1111111 22233 2333322 23 577777789999999998765554442
Q ss_pred --CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCC---EEEEEE--cCCeEE
Q 003236 723 --HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFP---SLLVIG--CYETLE 793 (837)
Q Consensus 723 --h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~fspdg~---~L~sgs--~dg~I~ 793 (837)
..+.|++++.+|.+.++++|+ .|.+.+||++-+ ..+... ..+..++..+..+|-.+ .+++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 457899999999999999999 899999999876 333332 23346677776666443 444444 456899
Q ss_pred EEECCCCcEEE-eccC-------------------CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 794 LWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 794 IwDl~s~~~~~-l~~h-------------------~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|++.++.... +... .-....+++...+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 99998885431 1111 11122334444567899999999999998
No 237
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=8.6e-12 Score=130.62 Aligned_cols=228 Identities=16% Similarity=0.202 Sum_probs=161.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---- 673 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---- 673 (837)
-.+..++|++.-..++++..|-.|++||-.. ..+..........|+|++|-|.+...++.+.. +.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 3477889998777789999999999999886 32222223345789999999988777777774 55999976421
Q ss_pred e--------eeeEEe--cCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 674 S--------CAGVFK--CQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 674 ~--------~i~~~~--~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
. +...+. .+..|+++.|.+||..+++++. +..|.|||..++..+.......+.++-+.|+||+.+|+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA 256 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA 256 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence 1 112222 2456999999999999998886 5789999999987765554456788999999999999999
Q ss_pred e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC--CCC----------cEE------
Q 003236 743 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM--TEN----------KTL------ 803 (837)
Q Consensus 743 s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl--~s~----------~~~------ 803 (837)
. |+..++|.....- .+. ......+.|...+|+|+|++|+.+.... -++|.+ ... +.+
T Consensus 257 t~davfrlw~e~q~w--t~e-rw~lgsgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL 332 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSW--TKE-RWILGSGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADL 332 (445)
T ss_pred cccceeeeehhcccc--eec-ceeccCCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccc
Confidence 8 9999999654321 122 2222345899999999999877665543 223332 111 011
Q ss_pred ---Eecc----CCCCeeEEEEeCCCCEEEEEECCC
Q 003236 804 ---TLSA----HDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 804 ---~l~~----h~~~V~sla~spdg~~LaSgs~DG 831 (837)
+... ..+++.+++|.|.|.+||+.-..+
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 1111 146788999999999999876543
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.44 E-value=5.6e-12 Score=131.37 Aligned_cols=252 Identities=17% Similarity=0.271 Sum_probs=192.5
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe-CCCCeEEEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd-~~t~~~~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
+.+..+..++||.+.|+....-|...-+++.+.|.+++||- .+.++.-..+ .....+++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 34445677889999999999999888899999999999994 3444444333 234578999999999999999999999
Q ss_pred EEEEEcCCCC---ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE
Q 003236 621 VRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 621 I~IWDl~~~~---~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
+.-+.+...- ...+.+..|...|..+.|+-..+ .+++++.|..+.---.+.+..+..+......+++.+.-. +.
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 9999876422 23567778999999999997755 555777787665545555555544443333333333222 55
Q ss_pred EEEEcCCeEEEEECC--CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 698 LAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 698 lags~dg~I~iwDl~--s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
++|...|.|.+..+. .-..+.++.+|.+.+++++|.+...+|++|. |..|.+||+.... ....++.+|...|..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence 666667777666544 4477889999999999999999999999998 9999999997653 4667778889999999
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
...+--+.+++++.||.|.+||++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 9888888999999999999999853
No 239
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.43 E-value=9.5e-11 Score=127.81 Aligned_cols=272 Identities=16% Similarity=0.224 Sum_probs=194.0
Q ss_pred CeEEEEEcCCCCEEEEEECCC---------------cEEEEeCCCCeEEEEeccCCCC--eE-EEEEcCCCCEEEEEeCC
Q 003236 557 KVESCHFSPDGKLLATGGHDK---------------KAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSAD 618 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg---------------~I~VWd~~t~~~~~~l~~h~~~--I~-~l~fspdg~~Latgs~D 618 (837)
.|..+.|||.++||++-+... .+.|||+.++..+..+..-..+ .+ -+.|+.+.+++|-. ..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~ 151 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VG 151 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-cc
Confidence 489999999999999976533 4999999999999998776665 55 68899888877655 34
Q ss_pred CeEEEEEcCCCCceeEEeecc-ccceEEEEEcCCCCe-EEEE-----EeCCCcEEEEECCCCeeeeEEec-CCCeeEEEE
Q 003236 619 RTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGVFKC-QSGATQMRF 690 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h-~~~V~sl~fspdg~~-llas-----gs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~ 690 (837)
..++|+++ ++......+... ...|....|+|.++. .||. .+..+.+++|.+..+..+..... ...-..+.|
T Consensus 152 ~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 152 SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence 57999997 333222222211 256888889987432 2222 35678999999987766655443 234456888
Q ss_pred ecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCC
Q 003236 691 QPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGS 756 (837)
Q Consensus 691 sp~g~~llags~-----------dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~ 756 (837)
.+.|+++++-.. +..++|+++....+.... +..++|...+|.|.++.+++++ +-.+.++|++..
T Consensus 231 ~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N- 308 (561)
T COG5354 231 QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN- 308 (561)
T ss_pred ecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-
Confidence 888888765432 356888988855444333 5688999999999988777765 779999999875
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE-----
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS----- 828 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs----- 828 (837)
.. +......-..+.|+|.++++++++.++ .|.+||..+...+.-.-......-+.|+||+.++.+..
T Consensus 309 ---l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 309 ---LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred ---eE--EecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCccc
Confidence 22 223345556789999999999988875 89999988776653222223445578999999888764
Q ss_pred -CCCcEEEeC
Q 003236 829 -HDKCVKIWK 837 (837)
Q Consensus 829 -~DG~I~IWd 837 (837)
.|..|+|||
T Consensus 384 ~~Dn~i~l~~ 393 (561)
T COG5354 384 RVDNSIKLWD 393 (561)
T ss_pred ccCcceEEEE
Confidence 378899996
No 240
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.42 E-value=2.9e-12 Score=129.21 Aligned_cols=264 Identities=15% Similarity=0.211 Sum_probs=179.7
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..+.+|...+.|.+|...... ....++ .|...|+.+...|+ ..|.+-++|+.+.+|++.
T Consensus 26 ~rL~sg~~~G~V~~w~lqt~r-------------------~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 26 ERLMSGLSVGIVKMWVLQTER-------------------DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred hhhhcccccceEEEEEeecCc-------------------cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 346778888999999665442 223445 56777999988887 467888899999999988
Q ss_pred CCeEEEEeccCCCCeEEEEEcCC-----CC----EEEEEeCCC-eEEEEEcCCCCceeEE----eeccccceEEEEEcCC
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPS-----LS----RLATSSADR-TVRVWDTENPDYSLRT----FTGHSTTVMSLDFHPS 651 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspd-----g~----~Latgs~Dg-~I~IWDl~~~~~~~~~----~~~h~~~V~sl~fspd 651 (837)
....+.. |.-.++++.|++- ++ .++.-+... .+.+-|..... .+.. -.+..+.++|..+..+
T Consensus 86 ~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 86 YSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred CcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCceeeeecccc
Confidence 7554432 3344455555431 11 122211111 01222221111 1111 1123466777775432
Q ss_pred --CCeEEEEEeCCCcEEEEECCCCeeeeEEe-----------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--e-
Q 003236 652 --KEDLLCSCDNNSEIRYWSINNGSCAGVFK-----------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ--V- 715 (837)
Q Consensus 652 --g~~llasgs~Dg~I~vwDl~t~~~i~~~~-----------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~--~- 715 (837)
...++++|.++|.|.+||+.++..+..+. +..++.++.|.+.-..=+.++.+..+..|.+... .
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 24466778899999999999974433322 3567888888876666677777888888887643 1
Q ss_pred -EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 716 -CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 716 -~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
...++.-..-.|..+.+-||++.+|+++ |+.||||+.++. ..+..+.-|...|.+++|+|+...+++++.|..|.
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 1222222345688899999999999999 999999999998 67888888999999999999999999999999999
Q ss_pred EEEC
Q 003236 794 LWNM 797 (837)
Q Consensus 794 IwDl 797 (837)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.5e-11 Score=135.22 Aligned_cols=237 Identities=15% Similarity=0.187 Sum_probs=171.7
Q ss_pred cCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeeccccceEEEE-EcCCCCeEEEEEeCCCcEEEEECCC
Q 003236 595 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINN 672 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~-fspdg~~llasgs~Dg~I~vwDl~t 672 (837)
.|....+.|..+|||.|+ +||.+.-.|+|||+..-. ++.-......|..+. ++.|-..++ .-..|.+|-+..-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~v-~L~~DR~IefHak-- 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKSV-FLQNDRTIEFHAK-- 123 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhhe-EeecCceeeehhh--
Confidence 477888999999999985 567778899999998633 333332233444433 333322222 3334666655432
Q ss_pred CeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003236 673 GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 751 (837)
Q Consensus 673 ~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwD 751 (837)
+-....+..+.....++++.-..-|++++....|+-++++.|.-+..+....+.+++|..++...+|++|+ +|.|.+||
T Consensus 124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 22233334445556677776666788888889999999999999988888889999999999999999999 99999999
Q ss_pred cCCCCCceeEEE---eecCC-----CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCC--CCeeEEEEeCC-
Q 003236 752 IGSGSKGECIHE---LSCTG-----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHD--KLVSSLAASTV- 820 (837)
Q Consensus 752 l~s~~~~~~i~~---~~~~~-----~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~--~~V~sla~spd- 820 (837)
.++......+.. +..+. ..|+++.|+.+|-.+++|+.+|.|.|||++..+++....|. -+|..+.|.+.
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 998744332221 11222 34899999999999999999999999999999998777775 47888999765
Q ss_pred -CCEEEEEECCCcEEEeC
Q 003236 821 -NGMVASASHDKCVKIWK 837 (837)
Q Consensus 821 -g~~LaSgs~DG~I~IWd 837 (837)
...|+|+ +...++|||
T Consensus 284 ~q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 284 QQNKVVSM-DKRILKIWD 300 (703)
T ss_pred CCceEEec-chHHhhhcc
Confidence 3456665 456789997
No 242
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.5e-09 Score=115.01 Aligned_cols=266 Identities=12% Similarity=0.102 Sum_probs=186.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCC--CeEE--EEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTES--FTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW 624 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~---Dg~I~VWd~~t--~~~~--~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IW 624 (837)
.+.+.++-|+|+|++++|.++-. +|.|..|.++. |++. ........+-+.+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 45566888999999999988755 47788887764 4443 222222334488999999999999876 5799999
Q ss_pred EcCCCCcee--EEeeccccc----------eEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE----EecCCCeeEE
Q 003236 625 DTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGATQM 688 (837)
Q Consensus 625 Dl~~~~~~~--~~~~~h~~~----------V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~----~~~~~~i~sl 688 (837)
-+.+..... .....|.+. +.+..+.|+++++++..-.--.|.+|++..++.... +....+...|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 986533211 123335544 889999999886665543445799999997765432 2346678999
Q ss_pred EEecCCCEEEEEEc-CCeEEEEECCCC-eEEEEEcC---------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC
Q 003236 689 RFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG 755 (837)
Q Consensus 689 ~~sp~g~~llags~-dg~I~iwDl~s~-~~~~~l~~---------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~ 755 (837)
.|+|++++.++.++ +++|.+|..+.. ..+..+.. ...+...|.+++||++|.++. .+.|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999999888776 789999998773 22222221 234677899999999999988 558999988765
Q ss_pred CC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC--CCCcEEEe--ccCCCCeeEEEEe
Q 003236 756 SK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTL--SAHDKLVSSLAAS 818 (837)
Q Consensus 756 ~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl--~s~~~~~l--~~h~~~V~sla~s 818 (837)
.. ...+.....++..-..+.|++++++|+++..++ .|.+|.+ .+|++..+ ........||.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 32 334444455555678999999999999998876 6777754 56665422 2344455666664
No 243
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=2.7e-12 Score=138.77 Aligned_cols=278 Identities=15% Similarity=0.189 Sum_probs=209.7
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKA 579 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp--dg~~Lasgs~Dg~I 579 (837)
+.....++++||.|..|.+|.|.... .......+|...|.-..|-| +..-+++++.||.|
T Consensus 150 FN~~Gd~l~SgSDD~~vv~WdW~~~~------------------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 150 FNQRGDVLASGSDDLQVVVWDWVSGS------------------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred ecccCceeeccCccceEEeehhhccC------------------cccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 34455678899999999888665432 11333458888888888988 44579999999999
Q ss_pred EEEeCCC-CeE--EEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCc--eeEEeecccc---ceEEEEEcC
Q 003236 580 VLWCTES-FTV--KSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--SLRTFTGHST---TVMSLDFHP 650 (837)
Q Consensus 580 ~VWd~~t-~~~--~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~h~~---~V~sl~fsp 650 (837)
++=.+.. +.+ ...+..|.+.|..++..|+ ...|.+++.|+.+.-+|+..... .+.....+.. ...+|+.+|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9886643 332 3556779999999999996 45689999999999999886542 1222233333 578899999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeee------eEE-------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC--C-
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCA------GVF-------KCQSGATQMRFQPRLGRILAAAIENYISILDVET--Q- 714 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i------~~~-------~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s--~- 714 (837)
...+.+++++.|-.+++||.+.-... ..+ .....|++++|+.++..++++..|-.|++|.-.- +
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 99999999999999999998753211 222 1234699999999999999999999999995432 2
Q ss_pred ---------eEEE-EEcCCCC--CEEEEEE-cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 715 ---------VCRL-KLQGHKN--QVHSVCW-NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 715 ---------~~~~-~l~~h~~--~V~sl~~-spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
..+. .+++|.+ .|.++-| -|..+|+++|+ -|.|.||+-.++ +.+..+.+....|.|+.-+|--
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr~VVNCLEpHP~~ 448 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDRHVVNCLEPHPHL 448 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---HHHHHhhcccceEeccCCCCCC
Confidence 1222 3778865 4667755 57889999999 569999998887 6666677777789999999999
Q ss_pred CEEEEEEcCCeEEEEECCCC
Q 003236 781 PSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~ 800 (837)
+.|++++-|..|+||-..+.
T Consensus 449 PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred chhhccCCccceeeecCCcc
Confidence 99999999999999987443
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=9.8e-10 Score=120.57 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=169.7
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEeecc-------
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH------- 639 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~~~~~~~~~~~~h------- 639 (837)
++|.|.|..+++.+..+..-..+- .+ ++||++.|+++.. +..|.+||+.+.+. +..+.-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence 899999999999998886544333 34 9999999888766 78999999999775 3333321
Q ss_pred ccceEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-Ce-E
Q 003236 640 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET-QV-C 716 (837)
Q Consensus 640 ~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s-~~-~ 716 (837)
......++++|||+.++++--. +..|.++|+.+++.+..+....+..-...+.+. +.+-|.||......+.+ ++ .
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT--FFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc--cEEEeecCceEEEEecCCCceE
Confidence 2234478999999988766644 899999999999999988875543333333222 22333444444433322 11 1
Q ss_pred EEE---EcCCCCCEE-EEEEcC-CCCEEEEEeCCeEEEEEcCCCCCc--eeEEEeec-------CCCceEEEEEeCCCCE
Q 003236 717 RLK---LQGHKNQVH-SVCWNT-SGEYLASVSDELVRVWSIGSGSKG--ECIHELSC-------TGNKFHSCVFHPTFPS 782 (837)
Q Consensus 717 ~~~---l~~h~~~V~-sl~~sp-dg~~LasgsDg~I~IwDl~s~~~~--~~i~~~~~-------~~~~I~sv~fspdg~~ 782 (837)
... +.....++. .-.|.+ +|.++++..+|.|.+.|+...... ..+..+.. ....+.-++++++++.
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ 261 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR 261 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE
Confidence 111 111001110 013455 888888888999999997553211 12222111 1233445999999999
Q ss_pred EEEEE----------cCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003236 783 LLVIG----------CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 837 (837)
Q Consensus 783 L~sgs----------~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWd 837 (837)
+++.. ..+.|.++|..+++.+....-...+..+++++|++ +|++.+ .++.|.|.|
T Consensus 262 lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 99853 12489999999999996655667899999999999 887666 578788875
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=8.1e-11 Score=135.15 Aligned_cols=222 Identities=17% Similarity=0.169 Sum_probs=151.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCC--eEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR 622 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg--~I~ 622 (837)
+.+..|...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+...+|+|||+.|+. .+.+| .|+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 4455677789999999999999877644 368999998876543 3334455667999999998874 44454 688
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llag 700 (837)
+||+.++. ...+..+........|+|++..++++...++ .|+++|+.+++...............|+|+++.++..
T Consensus 271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence 88998765 3445556666777899999998887765554 5778888877754433222334457899999999887
Q ss_pred EcCC---eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 701 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 701 s~dg---~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
..++ .|.+||+.++.... +. +........|+|||+.|+..+ ++ .|.++++... ....+....+.+..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~ 422 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE 422 (430)
T ss_pred EccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence 7542 58899998875433 22 222233568999999988776 33 5777777533 22233334455666
Q ss_pred EEEeCC
Q 003236 774 CVFHPT 779 (837)
Q Consensus 774 v~fspd 779 (837)
.+|+|-
T Consensus 423 p~ws~~ 428 (430)
T PRK00178 423 PSWSPY 428 (430)
T ss_pred CccCCC
Confidence 677663
No 246
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=99.39 E-value=2.3e-13 Score=137.34 Aligned_cols=77 Identities=32% Similarity=0.750 Sum_probs=63.8
Q ss_pred CcchHHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCcccCCCCCcchhHHHHHHHHHHhhccc----cccchhhhhh
Q 003236 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNE----KHSESAASYI 79 (837)
Q Consensus 4 ~~~~~~~~l~~yiydyl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~~fL~eww~~fwd~f~a~~~~----~~s~~~~~y~ 79 (837)
++-.|+++|..||||||++-|..++|+.|+.|..+..+ +.+-.+-+||.+|||||||+|+|...+ .||..+..+.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 56679999999999999999999999999999887766 455667799999999999999995443 5666666655
Q ss_pred HH
Q 003236 80 ES 81 (837)
Q Consensus 80 q~ 81 (837)
++
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 54
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=7.7e-11 Score=135.67 Aligned_cols=221 Identities=18% Similarity=0.194 Sum_probs=148.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECC-C--cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEE-EeCCCe--EEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRV 623 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~D-g--~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Lat-gs~Dg~--I~I 623 (837)
.+..+...+.+..|+|||+.|+..+.+ + .|++||+.+++... +....+.....+|+|||+.|+. .+.++. |++
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344566788999999999998877543 2 58889998876533 2223344557899999998765 455664 777
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags 701 (837)
||+.++. ...+..+...+...+|+||+..++++...++ .|+++|+.+++...............|+|++++|+..+
T Consensus 291 ~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 291 VDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEE
Confidence 7887654 4445555566778999999998887776554 47777887776544332223344578999999988876
Q ss_pred cC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 702 IE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 702 ~d-g--~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
.+ + .|.++|+.++.... +... .......|+|||+.|+... ++ .|++++... .....+....+.+...
T Consensus 369 ~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p 442 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSP 442 (448)
T ss_pred ecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCC
Confidence 54 3 56778888876433 2222 1223458999999888766 34 477777643 2334444445566777
Q ss_pred EEeCC
Q 003236 775 VFHPT 779 (837)
Q Consensus 775 ~fspd 779 (837)
+|+|-
T Consensus 443 ~Wsp~ 447 (448)
T PRK04792 443 AWSPF 447 (448)
T ss_pred ccCCC
Confidence 77763
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=1.3e-10 Score=132.68 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=148.2
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D--g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
..|.++|..... .+.+..+...+.+.+|+|+++.++++...+ ..|++||+.+++..........+.+++|+|+++.
T Consensus 170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence 368888876433 455556677899999999999877665433 4799999998876655555566778999999998
Q ss_pred EEEEEc-C--CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCC
Q 003236 697 ILAAAI-E--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 697 llags~-d--g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
|++... + ..|++||+.++... .+..+........|+||++.|+.++ ++ .|+++|+.++. ...+..+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence 876543 3 36999999877543 3334555556789999999888766 33 68888887652 223333456
Q ss_pred ceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003236 770 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG 831 (837)
.+..+.|+|++++|+.++.++ .|++||+.++....+... ......+|+||+++|+.++.++
T Consensus 323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 677889999999999988876 899999988765544432 2345678999999888877654
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.3e-10 Score=130.80 Aligned_cols=238 Identities=14% Similarity=0.114 Sum_probs=158.4
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCE--E-EEEeCCC--eEEEEEcCCCCceeEEeeccccceEEEEEcCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~--L-atgs~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspd 651 (837)
..|.+.|.+.+... .+......+.+-+|+|||+. + ++...+| .|++.++.++.. ..+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence 35777787655443 34445666788999999875 2 2444443 578888887653 333334455667899999
Q ss_pred CCeEEEEEeCCC----cEEEEECCCC---eeeeEEecC-CCeeEEEEecCCCEEEEEEc-CCe--EEEEECCC-CeEEEE
Q 003236 652 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFKCQ-SGATQMRFQPRLGRILAAAI-ENY--ISILDVET-QVCRLK 719 (837)
Q Consensus 652 g~~llasgs~Dg----~I~vwDl~t~---~~i~~~~~~-~~i~sl~~sp~g~~llags~-dg~--I~iwDl~s-~~~~~~ 719 (837)
|+.++++...+| .+.+|++..+ ......... ......+|+|||+.|+..+. ++. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 998887775433 3344677653 333333222 23467899999998887764 554 55555542 233444
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 003236 720 LQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL 792 (837)
Q Consensus 720 l~~h~~~V~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d---g~I 792 (837)
+..+...+....|+|||+.|+... + ..|.+||+.++.. ..+......+....|+|||+.|+..+.+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 554556778899999999988776 2 3799999988732 2222223456778999999988876543 379
Q ss_pred EEEECCCCcEEEeccCCCCeeEEEEeCCC
Q 003236 793 ELWNMTENKTLTLSAHDKLVSSLAASTVN 821 (837)
Q Consensus 793 ~IwDl~s~~~~~l~~h~~~V~sla~spdg 821 (837)
+++|+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999998877666666677888998753
No 250
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2.3e-12 Score=140.64 Aligned_cols=166 Identities=17% Similarity=0.271 Sum_probs=128.9
Q ss_pred EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEE
Q 003236 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRY 667 (837)
Q Consensus 589 ~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~v 667 (837)
....+.+|.+.|+|+.|+.+|.+|++||.|-.+.|||.-..+.....-.+|...|.++.|.|. ++.++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 446788999999999999999999999999999999998767666677899999999999985 5678889999999999
Q ss_pred EECCCCe----------eeeEEe-cCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE-EE---------EEcCCCC
Q 003236 668 WSINNGS----------CAGVFK-CQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-RL---------KLQGHKN 725 (837)
Q Consensus 668 wDl~t~~----------~i~~~~-~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~-~~---------~l~~h~~ 725 (837)
+|+...+ .+..+. +...|..++..|++ ..+.++++||.|+-||++.... .. .+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9998522 122222 23457778888888 6788999999999999987321 11 1111123
Q ss_pred CEEEEEEcCCC-CEEEEEe-CCeEEEEEcCC
Q 003236 726 QVHSVCWNTSG-EYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 726 ~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s 754 (837)
...|+.++|.. .+|++|+ |-..++||.+.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 46788999865 5677776 88999999653
No 251
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=4e-11 Score=122.09 Aligned_cols=146 Identities=17% Similarity=0.342 Sum_probs=107.5
Q ss_pred eeEEEEecCCCEEEEEEc----------CCeEEEEECCC-CeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe---CCeEEE
Q 003236 685 ATQMRFQPRLGRILAAAI----------ENYISILDVET-QVCRLKLQG-HKNQVHSVCWNTSGEYLASVS---DELVRV 749 (837)
Q Consensus 685 i~sl~~sp~g~~llags~----------dg~I~iwDl~s-~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs---Dg~I~I 749 (837)
-..+.|++.|.+|++-.. -+...+|.++. ...+..+.- ..++|.+++|+|+|+.|++.. +..|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 345778888887766544 12344555432 223333332 345799999999999876653 669999
Q ss_pred EEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEE
Q 003236 750 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 750 wDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d---g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaS 826 (837)
||++. ..+..+. ...+..+.|+|+|++|++++.+ |.|.+||+.+.+.+....|.. ++.++|+|||++|++
T Consensus 88 yd~~~----~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKG----KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcc----cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEE
Confidence 99962 4555553 5677899999999999998754 579999999888886666654 789999999999999
Q ss_pred EEC------CCcEEEeC
Q 003236 827 ASH------DKCVKIWK 837 (837)
Q Consensus 827 gs~------DG~I~IWd 837 (837)
+.. |..++||+
T Consensus 161 a~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEeccceeccccEEEEE
Confidence 874 78889985
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2e-10 Score=131.40 Aligned_cols=215 Identities=13% Similarity=0.112 Sum_probs=142.5
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe--EEEEEeCC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCC
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRL 694 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~--llasgs~D--g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g 694 (837)
+.|.+.|.+... .+.+......+.+-.|+|||.. ++++...+ ..|++.++..++........+......|+|||
T Consensus 165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 357777776543 3444445566778899999876 33344444 36888899888766665555666778999999
Q ss_pred CEEEEEEc-CC----eEEEEECCCC---eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEE--EcCCCCCceeEE
Q 003236 695 GRILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVW--SIGSGSKGECIH 762 (837)
Q Consensus 695 ~~llags~-dg----~I~iwDl~s~---~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~Iw--Dl~s~~~~~~i~ 762 (837)
+.|+.... +| .+.+|++..+ ........+.......+|+|||+.|+..+ ++...|| ++.... ....
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~ 320 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPR 320 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceE
Confidence 99887664 22 3444776652 33333333334456789999999888776 5644444 543221 1223
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC-C--CcEEEe
Q 003236 763 ELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW 836 (837)
Q Consensus 763 ~~~~~~~~I~sv~fspdg~~L~sgs~d---g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~-D--G~I~IW 836 (837)
.+......+....|+|||+.|+..+.+ ..|++||+.+++...+......+..+.|+|||++|+..+. + ..|++|
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 333344566788999999999887654 3799999999988766655556788999999998775443 2 345555
Q ss_pred C
Q 003236 837 K 837 (837)
Q Consensus 837 d 837 (837)
|
T Consensus 401 d 401 (428)
T PRK01029 401 S 401 (428)
T ss_pred E
Confidence 3
No 253
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=1.1e-10 Score=118.95 Aligned_cols=154 Identities=19% Similarity=0.293 Sum_probs=110.8
Q ss_pred EEEEcCCCCEEEEEEC---C-------CcEEEEeCC-CCeEEEEecc-CCCCeEEEEEcCCCCEEEEE--eCCCeEEEEE
Q 003236 560 SCHFSPDGKLLATGGH---D-------KKAVLWCTE-SFTVKSTLEE-HTQWITDVRFSPSLSRLATS--SADRTVRVWD 625 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~---D-------g~I~VWd~~-t~~~~~~l~~-h~~~I~~l~fspdg~~Latg--s~Dg~I~IWD 625 (837)
.+.|+++|++|++-.. | +...||.++ ....+..+.- ..+.|.+++|+|+++.|++. ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5889999988765433 1 234555542 2233334432 34579999999999987655 3567999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe--CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 702 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs--~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~- 702 (837)
++. + .+..+ +...+..+.|+|+|..++++|. ..|.|.+||+++.+.+..+.+. .++.++|+|+|++++++..
T Consensus 90 ~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 90 VKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS 164 (194)
T ss_pred Ccc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence 973 2 24444 3567889999999987765542 3478999999999988887764 5789999999999998875
Q ss_pred -----CCeEEEEECCCCeEEEE
Q 003236 703 -----ENYISILDVETQVCRLK 719 (837)
Q Consensus 703 -----dg~I~iwDl~s~~~~~~ 719 (837)
|+.++||+.. |+.+..
T Consensus 165 ~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cceeccccEEEEEec-CeEeEe
Confidence 6889999985 544443
No 254
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=3.8e-09 Score=111.97 Aligned_cols=261 Identities=10% Similarity=0.125 Sum_probs=182.7
Q ss_pred CCcEEEEeCCCC--eEE-EEeccCCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEee---ccccceEEE
Q 003236 576 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFT---GHSTTVMSL 646 (837)
Q Consensus 576 Dg~I~VWd~~t~--~~~-~~l~~h~~~I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~---~h~~~V~sl 646 (837)
+.-|++|++++. +.. ..+-.+.+.++-|+|+|+.++|+++..+ |.|..|.++...-.+..+. ....+.+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999988732 221 1223466789999999999999988664 7788888875322122221 122344889
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCC-Cee---eeEEecCCC----------eeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINN-GSC---AGVFKCQSG----------ATQMRFQPRLGRILAAAI-ENYISILDV 711 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t-~~~---i~~~~~~~~----------i~sl~~sp~g~~llags~-dg~I~iwDl 711 (837)
++++++..++++....|.|.++-+.. |.. +..+.+.+. +.+..+.|+++++++.+. ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999998887777789999999965 433 233444333 788999999999988876 478999999
Q ss_pred CCCeEEEEEc---CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeec------CCCceEEEEEeCC
Q 003236 712 ETQVCRLKLQ---GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHPT 779 (837)
Q Consensus 712 ~s~~~~~~l~---~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~------~~~~I~sv~fspd 779 (837)
..++....-. ......+.|.|+|++++..+.. +++|.+|..... ...+.+..+.. .......+.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775432211 2445678999999999998877 999999999874 22334433332 2345678899999
Q ss_pred CCEEEEEEcCC-eEEEEECCC--CcEE---EeccCCCCeeEEEEeCCCCEEEEEECCC-cEEEe
Q 003236 780 FPSLLVIGCYE-TLELWNMTE--NKTL---TLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW 836 (837)
Q Consensus 780 g~~L~sgs~dg-~I~IwDl~s--~~~~---~l~~h~~~V~sla~spdg~~LaSgs~DG-~I~IW 836 (837)
|++|+++.... .|.+|.+.. +++. ....+......+.|++.+++|+++..|+ .|.+|
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 99998887643 788887643 4332 2334455588999999999999988653 56665
No 255
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.30 E-value=4.3e-09 Score=118.71 Aligned_cols=255 Identities=11% Similarity=0.046 Sum_probs=162.2
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccce--
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 643 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V-- 643 (837)
++..+++++.++.|+.+|..+++.+...... +.+.+.-.. .+..++.++.++.|+.||..+++. +..+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceee
Confidence 4667888889999999999999988766432 222221111 345677788899999999998774 33322211111
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC-----e---eEEEEec--CCCEEEEEEcCCeEEEEE
Q 003236 644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-----A---TQMRFQP--RLGRILAAAIENYISILD 710 (837)
Q Consensus 644 ---~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-----i---~sl~~sp--~g~~llags~dg~I~iwD 710 (837)
.+..+. + . .++.+..++.+..+|+++|+.+........ + ..+.-+| .++.+++++.++.++.||
T Consensus 181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 111122 2 3 455777789999999999987765542111 0 0010011 356888889999999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 003236 711 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 711 l~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~ 788 (837)
.++++.+..... . ....... ++..+++++ ||.|..+|..++ +.+...... .....+... .+..|++++.
T Consensus 258 ~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 258 LRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred CCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEE--ECCEEEEEeC
Confidence 999988776652 1 1122222 355566666 999999999887 344333211 122222223 3568999999
Q ss_pred CCeEEEEECCCCcEE-EeccCCCCe-eEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 789 YETLELWNMTENKTL-TLSAHDKLV-SSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 789 dg~I~IwDl~s~~~~-~l~~h~~~V-~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|.|+++|..+++.+ .+..+...+ ....+. + +.|+.++.||.|+.|.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence 999999999999988 454454433 333333 3 4588889999998874
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.30 E-value=6.7e-11 Score=138.54 Aligned_cols=267 Identities=16% Similarity=0.236 Sum_probs=184.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe------ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
-+++.+..+-. +||..|. .-.|.+||+..+..+..+ ..|.. .... .-.+.+++++..-+.+.+=+...
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~--e~~~-~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRG--EGKV-KLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccc--cccc-eeccceEEEEEeecceeecchhh
Confidence 34455665554 4666554 357999999887665443 23400 0000 00233555555444443332221
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-----EEEEecCCCEEEEEEcC
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----QMRFQPRLGRILAAAIE 703 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-----sl~~sp~g~~llags~d 703 (837)
..+......|....+..+.. .++....+..+.+||...+.....+.+..... -+.++++.-++++|+.-
T Consensus 81 -----~~~~~~s~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 81 -----QIIERFSDWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred -----hhhhhccccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 11112223344444444434 44455568899999999887777666544322 23345555678888888
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+.|.+|+.........+.+|++.|.++.|+.||.++++++ |.++++|++.+.+... ...-+|...+..++|+|. .
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--e
Confidence 9999999874444446889999999999999999999999 8899999999885322 355578999999999999 8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~~l~~h~-~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++.|-+.++|+........+..|. ..|+.++..++...++|++.||.+++|+
T Consensus 231 i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 999999999999977666555666664 5799999999999999999999999996
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=5.7e-10 Score=124.22 Aligned_cols=187 Identities=17% Similarity=0.274 Sum_probs=151.6
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEecc---CCCCeEEEEEc------C--------------CCCEEEEEeCCCeE
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV 621 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~---h~~~I~~l~fs------p--------------dg~~Latgs~Dg~I 621 (837)
|-..++|....||.++||+..+++....+.. -.+..++..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4566899999999999999998887766532 23445555552 1 23467788889999
Q ss_pred EEEEcCCCCceeEEe-eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEE
Q 003236 622 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 699 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~lla 699 (837)
.+|++..++...+.. ..|.+.|.++.++.+- ..|.+++.|+.+.+|+......++.+.. ...+.+++++||++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999999887544443 5789999999988774 4777999999999999999999998886 455889999999998888
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC-----CCEEEEEe--CCeEEEEEcCC
Q 003236 700 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGS 754 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd-----g~~Lasgs--Dg~I~IwDl~s 754 (837)
++ +.|.+||+++++.+..|.+|.++|+++.|..+ |.++.++. +..+.+|-+..
T Consensus 162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 76 79999999999999999999999999999876 77777766 66788887765
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.9e-10 Score=123.86 Aligned_cols=264 Identities=17% Similarity=0.222 Sum_probs=169.7
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEEcC
Q 003236 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE 627 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-----------Dg~I~IWDl~ 627 (837)
+-+.|||.|.||+|--.-| |.+|--++...+..+. |.+ |.-+.|||+.+||+|-+. ...|+|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 4589999999999986554 8899888877777774 654 889999999999999654 2579999999
Q ss_pred CCCceeEEeec--cccce-EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 003236 628 NPDYSLRTFTG--HSTTV-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 628 ~~~~~~~~~~~--h~~~V-~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d 703 (837)
++.. .+.+.. ....+ .-+.|+.|++++.... ...|.||+..+...+..-.. ..+|....|+|.+..|+.-...
T Consensus 291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 9874 444443 22222 3467898877544333 35688887665332211111 2345555555554443322110
Q ss_pred -----C----------------------------------------------------eEEEEECCCCeEEEEEcCCCCC
Q 003236 704 -----N----------------------------------------------------YISILDVETQVCRLKLQGHKNQ 726 (837)
Q Consensus 704 -----g----------------------------------------------------~I~iwDl~s~~~~~~l~~h~~~ 726 (837)
. .+.|+.++........-.-...
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 0 1222222221111111113456
Q ss_pred EEEEEEcCCCCEEEEEe----CCeEEEEEcC-CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECC
Q 003236 727 VHSVCWNTSGEYLASVS----DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMT 798 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs----Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~---dg~I~IwDl~ 798 (837)
|...+|-|.|..+++-+ ..++.+|.+. +......+..+. ....+.+.|+|.|+++++++- .|.+.+||+.
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 77889999998777655 3489999988 343344455544 356788999999999887754 5799999988
Q ss_pred C--CcEEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003236 799 E--NKTLTLSAHDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 799 s--~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG 831 (837)
. .+.+....| ...+.+.|.|.|+|++|++.-.
T Consensus 526 ~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 526 YADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhhhhccCccc-cccccceECCCCCEEEEeeehh
Confidence 4 333333444 3467899999999999998643
No 259
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=4e-11 Score=130.58 Aligned_cols=280 Identities=15% Similarity=0.214 Sum_probs=193.9
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
.+..+.+|..+|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|..+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 4567889999999998877888899999999999998753 34667888999999999999998887765 88
Q ss_pred eEEEEEcCCCCceeEEe----eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec------CCCeeEEE
Q 003236 620 TVRVWDTENPDYSLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMR 689 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------~~~i~sl~ 689 (837)
-|.+||.--+....... .+..+.|.|+.- -+...+++.|+...+|+++|.+.++.+..++. +.-+.+++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 89999976544321111 122233444431 13344555668889999999999877666653 23478999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEE-EEcCCCCCceeEEEeecC
Q 003236 690 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSCT 767 (837)
Q Consensus 690 ~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~I-wDl~s~~~~~~i~~~~~~ 767 (837)
+.+.|+.++++-..|.|.+.|.++|+.+..++..+.....++- |....|+... |..+.| |..-.+ ......+..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kpp 959 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKPP 959 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCCC
Confidence 9999999999999999999999999998877765544444442 4555566555 888888 876554 122222211
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-------cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 768 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~-------~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
..+.. ..-.-|..+++......+.+|--... ..++-....+..++++.-|-+.-+..|...|.|.+
T Consensus 960 pepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 960 PEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred Ccchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 11111 11233556777777777888742211 11223345567888888887777778888888875
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.6e-09 Score=119.90 Aligned_cols=248 Identities=12% Similarity=0.170 Sum_probs=173.7
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCC--CEEEE-----EeCCCeEEEEEcCCCC-
Q 003236 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL--SRLAT-----SSADRTVRVWDTENPD- 630 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg--~~Lat-----gs~Dg~I~IWDl~~~~- 630 (837)
++..|+.|..+.|-- ..+.|.+|++.+.+.+.. .-|...|+.+.++|.+ ..||+ .+.-..|+||.+....
T Consensus 129 W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 688999987654432 246799999887544422 2367889999999863 33443 3445689999887322
Q ss_pred -cee--EEeeccccceEEEEEcCCCCeEEEEEeC--C---------CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 631 -YSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDN--N---------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 631 -~~~--~~~~~h~~~V~sl~fspdg~~llasgs~--D---------g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
..+ +.|. ...-..+.|++-|..+|+..+. | .+++++++...++...+...++|.++.|++++..
T Consensus 207 ~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 207 HQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred cchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 111 2222 2334567888887777665442 2 3788999986677777777899999999999987
Q ss_pred EEEEE--cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 697 ILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 697 llags--~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
++++. .-..+.|||++ +.++..+ .+++-+++-|+|.|++|+.++ -|.|.|||+.+. +++..+... .
T Consensus 285 F~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a~--~ 356 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKAA--N 356 (566)
T ss_pred EEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhccccccC--C
Confidence 76654 45789999987 4455555 456778999999999999887 569999999885 666666543 3
Q ss_pred eEEEEEeCCCCEEEEEEc------CCeEEEEECCCCcEEEeccCCCCeeEEEEeC
Q 003236 771 FHSCVFHPTFPSLLVIGC------YETLELWNMTENKTLTLSAHDKLVSSLAAST 819 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~------dg~I~IwDl~s~~~~~l~~h~~~V~sla~sp 819 (837)
.+-+.|+|||.+|++++. |+.++||+....... ..........++|-|
T Consensus 357 tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~-~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 357 TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH-EKMFKSELLQVEWRP 410 (566)
T ss_pred ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee-hhhhhHhHhheeeee
Confidence 466899999999999886 578999998654433 111122566777765
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.22 E-value=3.4e-08 Score=108.54 Aligned_cols=233 Identities=12% Similarity=0.136 Sum_probs=148.0
Q ss_pred EcCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEeccCC-------CCeEEEEEcCCCCEEEEEeC--CCeEEE
Q 003236 563 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSRLATSSA--DRTVRV 623 (837)
Q Consensus 563 fSpdg~~Lasgs~----------Dg~I~VWd~~t~~~~~~l~~h~-------~~I~~l~fspdg~~Latgs~--Dg~I~I 623 (837)
+||||+.|+++.. +..|.|||+.+++.+..+.... .....++++|||++|++... +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998877654 7899999999999998886422 23447899999999998763 689999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-Ceee-e---EEecC-CCe-eEEEEec-CCC
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA-G---VFKCQ-SGA-TQMRFQP-RLG 695 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i-~---~~~~~-~~i-~sl~~sp-~g~ 695 (837)
.|+.+++. +..+.-. +...-+..+.+ .+++ .| .||......+.+ ++.. . .+... ..+ ..-.|.+ +++
T Consensus 133 vD~~~~kv-v~ei~vp-~~~~vy~t~e~-~~~~-~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAF-VRMMDVP-DCYHIFPTAND-TFFM-HC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR 207 (352)
T ss_pred EECCCCcE-EEEEeCC-CCcEEEEecCC-ccEE-Ee-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence 99998765 4433321 11111222221 1111 12 244444333322 2211 1 11110 000 0014456 666
Q ss_pred EEEEEEcCCeEEEEECCCC-----eEEEEEcC-------CCCCEEEEEEcCCCCEEEEEe-----------CCeEEEEEc
Q 003236 696 RILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWSI 752 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~-----~~~~~l~~-------h~~~V~sl~~spdg~~Lasgs-----------Dg~I~IwDl 752 (837)
++++..+ |.|++.|+... .....+.. ..+.+.-++++++++.+++.. .+.|.++|.
T Consensus 208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 6655555 99999996442 22222211 233444599999999888742 258999999
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEe
Q 003236 753 GSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 805 (837)
Q Consensus 753 ~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs-~dg~I~IwDl~s~~~~~l 805 (837)
.+. +.+..+.. +..+..++++||++ .|++.. .++.|.++|..+++.+..
T Consensus 287 ~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 287 KTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 887 56666553 66899999999999 777776 467899999999988743
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=6.9e-10 Score=130.18 Aligned_cols=145 Identities=22% Similarity=0.369 Sum_probs=121.1
Q ss_pred cCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 504 ~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
...-.+++|+.-+.+-+|....+..+ ..+.+|.+.|.++.|+-||+++++.++|.++++|+
T Consensus 143 ~~~~~i~~gsv~~~iivW~~~~dn~p-------------------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~ 203 (967)
T KOG0974|consen 143 AEELYIASGSVFGEIIVWKPHEDNKP-------------------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWP 203 (967)
T ss_pred CcEEEEEeccccccEEEEeccccCCc-------------------ceecccCCceEEEEEccCCcEEEEEecCcceeeee
Confidence 34457888888888889976633211 15789999999999999999999999999999999
Q ss_pred CCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccc-cceEEEEEcCCCCeEEEEEeC
Q 003236 584 TESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 584 ~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~-~~V~sl~fspdg~~llasgs~ 661 (837)
+++.+... +.-+|+..|+.++|.|+ +++|++.|.+.++|+.+... +..+.+|. ..|..++..++ ..++++++.
T Consensus 204 i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~ 278 (967)
T KOG0974|consen 204 IDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIG-VIIKVTGGN 278 (967)
T ss_pred cccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCC-ceEEEeecc
Confidence 99988775 66689999999999988 99999999999999777533 45777775 56888988876 557889999
Q ss_pred CCcEEEEECCC
Q 003236 662 NSEIRYWSINN 672 (837)
Q Consensus 662 Dg~I~vwDl~t 672 (837)
|+.+++||+..
T Consensus 279 Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 279 DSTLKLWDLNG 289 (967)
T ss_pred Ccchhhhhhhc
Confidence 99999999865
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1.4e-09 Score=121.94 Aligned_cols=276 Identities=14% Similarity=0.197 Sum_probs=195.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---------------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---------------~~~~~l~~h~~~I~~l~fspdg~~Latgs~D 618 (837)
......|+.|+....|+|+|+.||.++|..+.+. ..-.++.+|++.|.-+.|+.+...|-|+..+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3456889999999999999999999999966531 1124578999999999999998999999999
Q ss_pred CeEEEEEcCCCCceeEEe-eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE
Q 003236 619 RTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~-~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
|.|.||-+-.+..+-..+ ....+.|.+++|..+|.. ++....||.|.+=.+.....-..--.......+.|++|...+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~k-IcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTK-ICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcE-EEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 999999988766532222 234567899999999875 456677888877666543322111112335578999999999
Q ss_pred EEEEcCCeEEEEECCCC-------eEEEE----EcCCCCCEEEEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCC
Q 003236 698 LAAAIENYISILDVETQ-------VCRLK----LQGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSK 757 (837)
Q Consensus 698 lags~dg~I~iwDl~s~-------~~~~~----l~~h~~~V~sl~~s--------pdg~~Lasgs-Dg~I~IwDl~s~~~ 757 (837)
+.+-..|.+.+||.... .+... +......|-.++|. ||...|+++- .|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 99989999999997642 12111 12223346677774 4777888888 78877776554432
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 758 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 758 ~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---------~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
+..+ ..+-.+..+.|+++|..|++++.+. .|.+|..-..-.-++......|++++|-..|-.+|.+
T Consensus 252 Pvv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A- 326 (1189)
T KOG2041|consen 252 PVVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA- 326 (1189)
T ss_pred CeEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence 2222 2246788899999999999998753 5666654433333677778899999998777666665
Q ss_pred CCCcEEE
Q 003236 829 HDKCVKI 835 (837)
Q Consensus 829 ~DG~I~I 835 (837)
.|+.|++
T Consensus 327 vdsfiyf 333 (1189)
T KOG2041|consen 327 VDSFIYF 333 (1189)
T ss_pred ecceEEE
Confidence 4666654
No 264
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.21 E-value=3.8e-10 Score=115.75 Aligned_cols=199 Identities=20% Similarity=0.255 Sum_probs=155.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE--EeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~--~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
...++.|++.+.-++++-.+|.+.+-+........ .++.|.-.++-..|+. +.+++++|+.|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 34578899989999999999999976655555444 7889999999999986 46789999999999999999544333
Q ss_pred -EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeEEecCCCeeEEEEecCCC-EEEEEEcCCeEEEEE
Q 003236 634 -RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKCQSGATQMRFQPRLG-RILAAAIENYISILD 710 (837)
Q Consensus 634 -~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~~~~~i~sl~~sp~g~-~llags~dg~I~iwD 710 (837)
.....|...|.+|.-+|....++++|+.|-.|++||.+ -++++..-...++|..+.++|... .+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 33667999999999999888999999999999999999 478888777789999999999533 455666666677777
Q ss_pred CCCC--e---EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEE-EEEcCCC
Q 003236 711 VETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG 755 (837)
Q Consensus 711 l~s~--~---~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~-IwDl~s~ 755 (837)
...+ + .....+.|.+-+..-.|.....+|++|+ |+.++ +|-.-++
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 6654 2 3445566777777778866667899988 87755 7755443
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.21 E-value=2.5e-09 Score=116.87 Aligned_cols=271 Identities=18% Similarity=0.199 Sum_probs=187.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--------------
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-------------- 619 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-------------- 619 (837)
-.-++..++|||.|.+|++.... .|.+|+...+..+..+. | ..|..+.|+|.++||.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 44568899999999999987654 58999988877665654 4 4599999999999999976533
Q ss_pred -eEEEEEcCCCCceeEEeeccccc--eE-EEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-eEEec--CCCeeEEEEec
Q 003236 620 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQP 692 (837)
Q Consensus 620 -~I~IWDl~~~~~~~~~~~~h~~~--V~-sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i-~~~~~--~~~i~sl~~sp 692 (837)
.+.|||+.++.. +..+.....+ .+ -+.|+-++.+.+-. ....++|+++ ++... ..+.. ..++....|+|
T Consensus 108 n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred CceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 499999998664 6666655544 44 67788776543333 2457999997 33221 11111 36788888998
Q ss_pred CCCE--EEEE-----EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe------------CCeEEEEEcC
Q 003236 693 RLGR--ILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIG 753 (837)
Q Consensus 693 ~g~~--llag-----s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs------------Dg~I~IwDl~ 753 (837)
.++. |++- +..+.+++|.+..+..+....-....-..+.|.+.|++|++-- +..++|+++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 7433 3332 2357899999887665544332333345688999998776431 2468888887
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc--CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC-
Q 003236 754 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD- 830 (837)
Q Consensus 754 s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~--dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D- 830 (837)
.. .+.......++|..++|.|.++.++++++ .-.+.++|++.+ +.+......=+.+.|+|.+++++.++-|
T Consensus 264 e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 264 ER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred cc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence 43 22222255789999999999988887774 448999999887 5555566666778899999998888765
Q ss_pred --CcEEEeC
Q 003236 831 --KCVKIWK 837 (837)
Q Consensus 831 --G~I~IWd 837 (837)
|.|-|||
T Consensus 338 l~gni~i~~ 346 (561)
T COG5354 338 LQGNIEIFD 346 (561)
T ss_pred cccceEEec
Confidence 5677775
No 266
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.19 E-value=1.7e-08 Score=113.91 Aligned_cols=252 Identities=13% Similarity=0.064 Sum_probs=161.1
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
+..+++++.++.|..+|..+++.+............+.. ++..+++++.++.|+.+|..+++... .... ...+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W-~~~~-~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELW-RAKL-SSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEee-eecc-CceeecC
Confidence 568888889999999999999988766544332223332 46788888999999999998877532 2221 1222221
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee------EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~------sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
... .++. ++.+..++.|+.||.++++.+..+....... +..+. ++.++++..++.+..+|.++++.+...
T Consensus 141 p~v-~~~~-v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 141 PLV-ANGL-VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CEE-ECCE-EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeee
Confidence 111 1233 4456678999999999999988876543321 11222 357788888899999999999877654
Q ss_pred cCCCC----C------E-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 721 QGHKN----Q------V-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 721 ~~h~~----~------V-~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
..... . + .+..+ .+..+++++ ++.++.||..++ +.+..... ....... ..+..|++++.
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~--~~~~~p~--~~~~~vyv~~~ 287 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG---RVLWKRDA--SSYQGPA--VDDNRLYVTDA 287 (377)
T ss_pred ccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC---cEEEeecc--CCccCce--EeCCEEEEECC
Confidence 31100 0 1 01111 234555555 999999999887 34443331 1112222 34567888999
Q ss_pred CCeEEEEECCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 789 YETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 789 dg~I~IwDl~s~~~~-~l~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.|+.+|..+++.+ ..... ...+..... .+..|++++.||.|++||
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 999999999999876 22121 122233333 366888899999999875
No 267
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=1.9e-08 Score=114.55 Aligned_cols=228 Identities=12% Similarity=0.064 Sum_probs=150.6
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCE-EEEEeCC---CeEEEEEcCCCCceeEEeeccccceEEEEEcCCC
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~-Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg 652 (837)
..|.+-|.+......... .. .+...+|+|||+. ++..+.+ ..|+++|+.+++. ..+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence 356665655444333333 33 7889999999984 6654443 5689999987653 3333355566778899999
Q ss_pred CeEEEEEeCC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCE
Q 003236 653 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV 727 (837)
Q Consensus 653 ~~llasgs~D--g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-g--~I~iwDl~s~~~~~~l~~h~~~V 727 (837)
..++++.+.+ ..|+++|+.++................|+|||+.|+..+.. + .|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9888777654 46888898887755444333334567899999988877753 2 688899988766433321 111
Q ss_pred EEEEEcCCCCEEEEEe-C-------C--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 003236 728 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL 794 (837)
Q Consensus 728 ~sl~~spdg~~Lasgs-D-------g--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~I 794 (837)
...|+|||++|+... . + .|.+.|+.++.. ..+... .......|+|||+.|+....++ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 248999999988776 2 2 678888877632 222222 2233578999999888877544 5888
Q ss_pred EECCCCcEEEeccCCCCeeEEE
Q 003236 795 WNMTENKTLTLSAHDKLVSSLA 816 (837)
Q Consensus 795 wDl~s~~~~~l~~h~~~V~sla 816 (837)
+++.......+....+.|...+
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSID 418 (419)
T ss_pred EecCCCeeEEeecCCCccCCCC
Confidence 8888776666655555554433
No 268
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=1.8e-10 Score=129.68 Aligned_cols=280 Identities=17% Similarity=0.288 Sum_probs=196.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEecc-CCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEE-HTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~-h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~ 630 (837)
.+.+..+.++|.|+-+|.++.-| +.+.|++. +....-+.. ..-.|-++.|++. -.+-++........||++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 34578899999999999998876 45666653 344333321 1234778888875 3344555555667789986433
Q ss_pred --ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 631 --~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
..-..+.+|...|+.+.|+|....++++|+.|-.|..||+++.. .+..+. -......+.|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 23356678999999999999999999999999999999999754 333333 25778899999988899999999999
Q ss_pred EEEECCCC-eEEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 707 SILDVETQ-VCRLKLQGHKNQVHSVCWNTS--GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 707 ~iwDl~s~-~~~~~l~~h~~~V~sl~~spd--g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
.+||++.+ .++..+++|...|+.++|..- +..+.+..|++|+.||...... .-........+|..-.+.|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCcee
Confidence 99999986 788889999999999998753 3334444499999999876432 112222345667777777765433
Q ss_pred EEE--EcCCeEEEEE---------CCCCc-EE-EeccCCCCeeEEEEeCCC----------CEEEEEECCCcEEEeC
Q 003236 784 LVI--GCYETLELWN---------MTENK-TL-TLSAHDKLVSSLAASTVN----------GMVASASHDKCVKIWK 837 (837)
Q Consensus 784 ~sg--s~dg~I~IwD---------l~s~~-~~-~l~~h~~~V~sla~spdg----------~~LaSgs~DG~I~IWd 837 (837)
++- -++..|.+++ +.++. .+ ++.+|.+.|...-|-..+ -.|+|-+.|..+++|-
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 322 1222344443 33322 22 788999988877664322 2799999999999993
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=2.6e-08 Score=107.93 Aligned_cols=281 Identities=12% Similarity=0.087 Sum_probs=187.8
Q ss_pred ccccccCC-CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeEEEEeccCCCC--eEEEEEcCCC
Q 003236 534 GRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQW--ITDVRFSPSL 609 (837)
Q Consensus 534 ~~~~~~~~-g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~--I~~l~fspdg 609 (837)
+.+|-... +.+|+.+..+.+|- +|-.+-. ++..+....||.=.||.++ .|+-+ +.|++. -.+=..+.||
T Consensus 206 GklWis~d~g~tFeK~vdl~~~v---S~PmIV~-~RvYFlsD~eG~GnlYSvdldGkDl---rrHTnFtdYY~R~~nsDG 278 (668)
T COG4946 206 GKLWISSDGGKTFEKFVDLDGNV---SSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKDL---RRHTNFTDYYPRNANSDG 278 (668)
T ss_pred ceEEEEecCCcceeeeeecCCCc---CCceEEc-ceEEEEecccCccceEEeccCCchh---hhcCCchhccccccCCCC
Confidence 44454444 44888888888874 3333332 3334445566665666443 22222 223321 2233345688
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEee-c---------cccceEEEE-EcCCCCeEEEEEeCCCcEEEEECCCCeeeeE
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFT-G---------HSTTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~-~---------h~~~V~sl~-fspdg~~llasgs~Dg~I~vwDl~t~~~i~~ 678 (837)
+.++.. ..|.|++||.++.......+. . ...+..-+. |++-...+++..+ .|...+.+...+-.+.
T Consensus 279 krIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq- 355 (668)
T COG4946 279 KRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ- 355 (668)
T ss_pred cEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE-
Confidence 887765 567899999987653222111 0 001111121 4443444665665 5778887776554443
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003236 679 FKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 679 ~~~~~~i~sl~~sp~g~~llags~dg-~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
+....+|.-..+..+.+.++.|..|| .+-|||.++++... +...-+.|.++..+++|++++++. ...|-++|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 33446688888888888899999998 89999999886544 444668899999999999999998 5589999999983
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg----~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
....-....+-|+.++|||++++|+.+--+| .|++||+.+++........+.=.+-+|.||+++|..-+
T Consensus 435 ---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 ---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 3323334467799999999999999987776 79999999999987666666667789999999877654
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.16 E-value=3.2e-09 Score=118.33 Aligned_cols=188 Identities=19% Similarity=0.309 Sum_probs=149.6
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEee---ccccceEEEEE------cC-------------CCCeEEEEEeCCCc
Q 003236 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDF------HP-------------SKEDLLCSCDNNSE 664 (837)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~---~h~~~V~sl~f------sp-------------dg~~llasgs~Dg~ 664 (837)
|...++|....||.++|||...+.. ...+. .-++..++..| +| .+..+++-|...|.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4467899999999999999997663 22221 11233344444 22 12456777888999
Q ss_pred EEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 665 IRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
|.+|++..++....+. +.+.|.++.++.+-..|.+++.|..+..|+......+..+......+.+++.+||+..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999999999998887 3567899999999999999999999999999999999999999999999999999998887
Q ss_pred EeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC-----CCEEEEEEc-CCeEEEEECCC
Q 003236 742 VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMTE 799 (837)
Q Consensus 742 gsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd-----g~~L~sgs~-dg~I~IwDl~s 799 (837)
++ +.|++||+.+. +.+..|.+|.++|.++.|... |.+++++.. +..+.+|-+..
T Consensus 162 as-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 AS-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cc-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 64 67999999998 899999999999999999877 666665544 44566665543
No 271
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.15 E-value=1.9e-09 Score=112.81 Aligned_cols=279 Identities=15% Similarity=0.223 Sum_probs=184.9
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
.+.+.=+.+.+.|.++++|+-.+...- +..+ ...-..+++++.+.++...|++|-..|++.-+
T Consensus 33 ~~~e~gv~~~s~drtvrv~lkrds~q~---------------wpsI--~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 33 IPKEEGVISVSEDRTVRVWLKRDSGQY---------------WPSI--YHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred ccCCCCeEEccccceeeeEEecccccc---------------Cchh--hhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 344455677899999999977665321 1111 12345679999999999999999999999988
Q ss_pred eCC----CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-------------------------------
Q 003236 583 CTE----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE------------------------------- 627 (837)
Q Consensus 583 d~~----t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~------------------------------- 627 (837)
.+. .....+....|...|..+.|+-..+.+++.+.|..+.---.+
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence 653 344555666788888888888777777777766433211111
Q ss_pred ---------CCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC--CeeeeEEecCCCeeEEEEecCCCE
Q 003236 628 ---------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN--GSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 628 ---------~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t--~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
+.-..+..+.+|.+.+.+++|.+.. .++.+|..|..|.+||+.- +.....+.+...|..+.+.+--..
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence 0012356778899999999999985 4777999999999999964 444445556677888888777788
Q ss_pred EEEEEcCCeEEEEECCCCeEEEE-E----------------------------cCC-----CCCEEEEEEcCCCCEEEEE
Q 003236 697 ILAAAIENYISILDVETQVCRLK-L----------------------------QGH-----KNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~-l----------------------------~~h-----~~~V~sl~~spdg~~Lasg 742 (837)
+++++.||.|.+||.+....... + .-| ...|...+-+....+...+
T Consensus 255 l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg 334 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG 334 (404)
T ss_pred eeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc
Confidence 99999999999999875432110 0 000 1122222222222222223
Q ss_pred eCCeEEEEEcCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 743 SDELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 743 sDg~I~IwDl~s~----~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
..-.+|+.|.-.. .....+..+......|+.+.+...-..|+++|.|..|+|||++.
T Consensus 335 ~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 335 FEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred ceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 3335555543211 00122334444456788899988888999999999999999864
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.15 E-value=3.6e-08 Score=123.87 Aligned_cols=237 Identities=13% Similarity=0.154 Sum_probs=161.4
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEeCCCCeEEEEecc-C-------------CCCeEEEEEcCCCCEEEEEeC-CCeEE
Q 003236 559 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE-H-------------TQWITDVRFSPSLSRLATSSA-DRTVR 622 (837)
Q Consensus 559 ~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h-------------~~~I~~l~fspdg~~Latgs~-Dg~I~ 622 (837)
..++++++ +.++++-+.++.|++||... ..+..+.. . -.....|++++++..|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 66777777788999999764 44444322 1 123578999998887666654 57899
Q ss_pred EEEcCCCCceeEEeecc-----------------ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec----
Q 003236 623 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---- 681 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h-----------------~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---- 681 (837)
++|+.++. +.++.+. -.....++|+|++..++++...++.|++||..++........
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 99987644 3333211 123468999997777888888889999999987754321110
Q ss_pred -----------CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC-------------C--------CCCEE
Q 003236 682 -----------QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-------------H--------KNQVH 728 (837)
Q Consensus 682 -----------~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~-------------h--------~~~V~ 728 (837)
-.....++++|+++.++++.. ++.|++||+.++.......+ + -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 123456999999986665554 68999999987643211100 0 11346
Q ss_pred EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--------------CCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 729 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--------------TGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 729 sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--------------~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
+++++++|.++++.. ++.|++||..++. .. .+.+ .-.....++++++|+.+++-+.++.|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~---v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir 883 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKR---VT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR 883 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCe---EE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence 889999998777766 8899999998762 22 1111 113567899999998777777788999
Q ss_pred EEECCCCcE
Q 003236 794 LWNMTENKT 802 (837)
Q Consensus 794 IwDl~s~~~ 802 (837)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988764
No 273
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=3.9e-09 Score=110.32 Aligned_cols=239 Identities=17% Similarity=0.292 Sum_probs=166.2
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCC------------CCeEEEEEcCCCC-
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFSPDGK- 568 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~------------~~V~sl~fSpdg~- 568 (837)
++-...++++|..+|-|.+|.-..... + .+.....+..|. .+|..+.|.+++.
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~-------------~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYK-------------G-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccc-------------c-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 344557899999999999994433322 1 222223333333 4688999998765
Q ss_pred -EEEEEECCCcEEEEeCCCCeEE-----------------------------------EEe-ccCCCCeEEEEEcCCCCE
Q 003236 569 -LLATGGHDKKAVLWCTESFTVK-----------------------------------STL-EEHTQWITDVRFSPSLSR 611 (837)
Q Consensus 569 -~Lasgs~Dg~I~VWd~~t~~~~-----------------------------------~~l-~~h~~~I~~l~fspdg~~ 611 (837)
.++..+.|++|++|.+...... +.+ ..|+.-|++|.++.|...
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 5677788999999975421110 111 258888999999999988
Q ss_pred EEEEeCCCeEEEEEcCCCCce--eEEeecc-----ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee----eEEe
Q 003236 612 LATSSADRTVRVWDTENPDYS--LRTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVFK 680 (837)
Q Consensus 612 Latgs~Dg~I~IWDl~~~~~~--~~~~~~h-----~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i----~~~~ 680 (837)
++++ .|=.|-+|+++-.... +.-++.+ +..|++..|+|....+++-.+..|+|++.|++..... ..+.
T Consensus 179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred Eeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 8887 5778999998754332 2223333 3578999999988888888888999999999843211 1111
Q ss_pred c-------------CCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCC------------CE---EEEE
Q 003236 681 C-------------QSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKN------------QV---HSVC 731 (837)
Q Consensus 681 ~-------------~~~i~sl~~sp~g~~llags~dg~I~iwDl~-s~~~~~~l~~h~~------------~V---~sl~ 731 (837)
. -..|..+.|++.|+++++-.. -+|++||+. ..+++.++.-|.. .| ..++
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 1 234788999999988876543 789999994 4567766665532 22 3578
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003236 732 WNTSGEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 732 ~spdg~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
|+.++.++.+|+ .+.+++|++..+.
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EcCCcceEecccccceEEEecCCCCc
Confidence 999999999999 8899999976553
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=3.8e-08 Score=123.63 Aligned_cols=233 Identities=11% Similarity=0.115 Sum_probs=157.1
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeEEeec--c------------ccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 601 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--H------------STTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 601 ~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~--h------------~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
..++++++ +.++++-+.++.|++||... .. +..+.+ . -.....++++++++.++++-..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 46788874 55666767788999999864 32 222221 1 12357899999877666665566789
Q ss_pred EEEECCCCeeeeEEec-----------------CCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEcCC----
Q 003236 666 RYWSINNGSCAGVFKC-----------------QSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGH---- 723 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~-----------------~~~i~sl~~sp~g~~l-lags~dg~I~iwDl~s~~~~~~l~~h---- 723 (837)
+++|+.++........ -.....++++|+++.+ ++...++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 9999987654322110 1124578999955555 455567899999998775432 2111
Q ss_pred -----------CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEE-----------Eeec--------CCCce
Q 003236 724 -----------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSC--------TGNKF 771 (837)
Q Consensus 724 -----------~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~-----------~~~~--------~~~~I 771 (837)
-.....|+|+|++..|+++. ++.|++||+.++.. ..+. .+.. .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCC
Confidence 12456799999998666555 78999999987532 1110 0000 01124
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccC--------------CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 772 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 772 ~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h--------------~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..++++++|..+++-..++.|++||..++.+..+.+. -.....|+++++|+++++-+.++.|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 6889999998777777788999999998877644332 23578899999999988888999999996
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=1.9e-09 Score=111.10 Aligned_cols=239 Identities=17% Similarity=0.318 Sum_probs=163.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----EEEEeccCC------------CCeEEEEEcCCC--CEEEE
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLAT 614 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h~------------~~I~~l~fspdg--~~Lat 614 (837)
..+.|++|.|...|.||++|...|.|.+|.-+... ....+.+|. ..|..|.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34569999999999999999999999999755322 222344443 357888887753 35777
Q ss_pred EeCCCeEEEEEcCCCC-----------------------------------------ceeEEe-eccccceEEEEEcCCC
Q 003236 615 SSADRTVRVWDTENPD-----------------------------------------YSLRTF-TGHSTTVMSLDFHPSK 652 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~~-----------------------------------------~~~~~~-~~h~~~V~sl~fspdg 652 (837)
.+.|++|++|.+.... .+.+.+ ..|...|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7799999999876431 001122 4577789999999887
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeee-EEe--c------CCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCe------E
Q 003236 653 EDLLCSCDNNSEIRYWSINNGSCAG-VFK--C------QSGATQMRFQPRL-GRILAAAIENYISILDVETQV------C 716 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~~i~-~~~--~------~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~------~ 716 (837)
..++ ++ .|-.|.+|++..-.-.. ... . ..-|++..|+|.. ..+...+..|.|++.|++... .
T Consensus 185 et~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 7555 44 47889999987533221 111 1 1237888999964 456677778999999998421 1
Q ss_pred EEE----------EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC------------Cc---e
Q 003236 717 RLK----------LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NK---F 771 (837)
Q Consensus 717 ~~~----------l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~------------~~---I 771 (837)
+.. +.+-...|..+.|+++|+||++-+--+|+|||++... .++.++.-|. .. -
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeee
Confidence 111 1122356888999999999998888899999998764 4555553331 11 2
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 772 HSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 772 ~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
..|.|+.|...+++|+..+..-||-
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEEecCCcccccccccccceeeec
Confidence 4578888888888888777666665
No 276
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.08 E-value=1.1e-07 Score=117.43 Aligned_cols=282 Identities=15% Similarity=0.214 Sum_probs=185.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEE----eCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE- 627 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW----d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~- 627 (837)
...+.|.++.|-++..-|+.+..+|.|.++ +..+.. +.....-...|.+++||||+..|+..+.+++|.+-+-.
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 544432 22333456789999999999999999999988876422
Q ss_pred ---------C---CC-cee--------EEeec------------------------cccceEEEEEcCCCCeEEEEEe--
Q 003236 628 ---------N---PD-YSL--------RTFTG------------------------HSTTVMSLDFHPSKEDLLCSCD-- 660 (837)
Q Consensus 628 ---------~---~~-~~~--------~~~~~------------------------h~~~V~sl~fspdg~~llasgs-- 660 (837)
. +. ..+ ..|.| +...-..|+|-.||.+++++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 00 000 00000 2334567889999987666553
Q ss_pred C---CCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEc---CCeEEEEECCC---CeEEEEEcCCCCCEEEE
Q 003236 661 N---NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAI---ENYISILDVET---QVCRLKLQGHKNQVHSV 730 (837)
Q Consensus 661 ~---Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~---dg~I~iwDl~s---~~~~~~l~~h~~~V~sl 730 (837)
. -..|+||+-+ |....+... .+--.+++|.|.|+.|++.-. ...|.+|+-+. ++....+......|..+
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2 2578999876 554444332 233467899999998888765 24566666432 22222222345689999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCE-EEEEEcCCeEEEEEC----CCC----
Q 003236 731 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN---- 800 (837)
Q Consensus 731 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~-L~sgs~dg~I~IwDl----~s~---- 800 (837)
.|++|+..|++.-.+.|.+|-..+.. .....++... ...+..+.|+|.... |.+.+.++.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 99999999999876669999887642 1222333322 233455889986543 555555455544332 111
Q ss_pred ------------cEE----------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 801 ------------KTL----------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 801 ------------~~~----------------~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..+ ........|.+++|++++..+|+-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 111 1112356799999999998899999999999884
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=6.7e-08 Score=110.08 Aligned_cols=201 Identities=10% Similarity=0.038 Sum_probs=136.0
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe-EEEEEeC--CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~-llasgs~--Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~ 695 (837)
..|.+-|.+... .+.+.... .+....|+|+++. ++++... +..|+++|+.+++........+......|+||++
T Consensus 169 ~~l~~~d~dg~~--~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY--QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc--eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC
Confidence 355565555432 23333333 7788999999986 4443332 3579999999888776665556667788999998
Q ss_pred EEEEEEc---CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC----eEEEEEcCCCCCceeEEEeecCC
Q 003236 696 RILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE----LVRVWSIGSGSKGECIHELSCTG 768 (837)
Q Consensus 696 ~llags~---dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg----~I~IwDl~s~~~~~~i~~~~~~~ 768 (837)
.++.... +..|+++|+.++... .+..+........|+|||+.|+..++. .|+++|+.++... .+. .. +
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-rlt-~~--g 320 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-QVV-FH--G 320 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-eCc-cC--C
Confidence 8776543 357899999887643 344344434566899999988887733 7888898876321 111 11 1
Q ss_pred CceEEEEEeCCCCEEEEEEcC---------CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 769 NKFHSCVFHPTFPSLLVIGCY---------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 769 ~~I~sv~fspdg~~L~sgs~d---------g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
.. ...|+|+|+.|+..+.. ..|++.|+.++....+... .......|+|||+.|+..+.+
T Consensus 321 ~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 321 KN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred Cc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 11 24899999999887754 2788999998887655543 233468999999987766644
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.05 E-value=1.4e-08 Score=104.50 Aligned_cols=241 Identities=12% Similarity=0.100 Sum_probs=164.4
Q ss_pred CCCeEEEEEcC---CCC-EEEEEECCCcEEEEeCCCCeEEEEeccCC------CCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 555 TSKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 555 ~~~V~sl~fSp---dg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
+..+..+.|.. +|. .|+-+..+|.|.+|..........+.+-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34466677754 555 56667778999999766544444443211 124578899989999999999999855
Q ss_pred EcCCCC-ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeE--EecCCCeeEEEEec-CCCEEEE
Q 003236 625 DTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FKCQSGATQMRFQP-RLGRILA 699 (837)
Q Consensus 625 Dl~~~~-~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~--~~~~~~i~sl~~sp-~g~~lla 699 (837)
+..... ..+..++.|..+++...|+.....++++|+.|+.+..||++ .++.+.. ..+..+|.+|.-+| +..+|++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 554332 22357889999999999998888999999999999999999 3444433 23467888888876 4668999
Q ss_pred EEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCc--eeEEEeecCCCceEEE
Q 003236 700 AAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSC 774 (837)
Q Consensus 700 gs~dg~I~iwDl~s-~~~~~~l~~h~~~V~sl~~spdg--~~LasgsDg~I~IwDl~s~~~~--~~i~~~~~~~~~I~sv 774 (837)
|+.|..|++||.+. ++++..-. -.+.|..+.++|.- .+|+++--.-.+|.++..+... ......+.|..-+..-
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG 307 (339)
T ss_pred eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecc
Confidence 99999999999995 56665443 34789999999853 4555555444677777654321 1334445555555556
Q ss_pred EEeCCCCEEEEEEc-CCeEE-EEE
Q 003236 775 VFHPTFPSLLVIGC-YETLE-LWN 796 (837)
Q Consensus 775 ~fspdg~~L~sgs~-dg~I~-IwD 796 (837)
.|.....+|++++. |+.++ +|-
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred ccccccceeeeeeccccceeeeee
Confidence 66444456777654 33433 554
No 279
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=7.2e-08 Score=108.62 Aligned_cols=307 Identities=11% Similarity=0.168 Sum_probs=196.2
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
..+++++|+.|+.+++.......+.....+ ......+.--+++.||++.|.-+.|+.....|-+...+|.|.||-+
T Consensus 25 e~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWml 100 (1189)
T KOG2041|consen 25 ESGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWML 100 (1189)
T ss_pred cCCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEee
Confidence 348999999999999985544332222111 1123344556789999999999999999999999999999999988
Q ss_pred CCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-------------------------------
Q 003236 585 ESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------------------------- 631 (837)
Q Consensus 585 ~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~------------------------------- 631 (837)
-.+.-.... ...++.|.+++|..||..|+....||.|.|=.++.+..
T Consensus 101 ykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~ 180 (1189)
T KOG2041|consen 101 YKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGET 180 (1189)
T ss_pred ecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcE
Confidence 776544322 23456788999999999988888888776544432110
Q ss_pred ----------------e-e---EEeeccccceEEEEEc--------CCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC
Q 003236 632 ----------------S-L---RTFTGHSTTVMSLDFH--------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683 (837)
Q Consensus 632 ----------------~-~---~~~~~h~~~V~sl~fs--------pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~ 683 (837)
+ + ..+......|..+.|. |+. -.++.|..+|.+.+-.-.+......+..+-
T Consensus 181 hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~Pvv~dtgm 259 (1189)
T KOG2041|consen 181 HLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPEPVVVDTGM 259 (1189)
T ss_pred EEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCCCeEEeccc
Confidence 0 0 0011111224455553 233 356677777777776555554445555556
Q ss_pred CeeEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003236 684 GATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg---------~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s 754 (837)
.+....|+++|..+++++.+. .|.+|.. -|+.+.+++.....|++++|-..|-.++.+-|+.|++=+++.
T Consensus 260 ~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP 338 (1189)
T KOG2041|consen 260 KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRP 338 (1189)
T ss_pred EeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeecc
Confidence 788999999999999888642 4455443 367777888888899999999999999999999999999886
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
..+...+. ..+.|.-.++. ...-.|.+||..+.+.. ....| ..++++..+--.|++-.+||.|
T Consensus 339 ~ykWgy~e---------~TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~---~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 339 EYKWGYIE---------ETVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTH---FENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred cceEEEee---------eEEEEEEccCC----CcceEEEEEecccChhhhhhhcc---eeehheecccEEEEeccccCCC
Confidence 53211111 01111111100 00126889998776644 22222 3445555554455555555554
No 280
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=2.2e-09 Score=130.94 Aligned_cols=188 Identities=22% Similarity=0.295 Sum_probs=149.1
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
.+.+.+..+|+.|+.|++|.+.. +..+.+.++.. ...|+.+.|+..|..+..+..||.+.+|
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~----------------~~~v~~~rt~g--~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGH----------------GQQVVCFRTAG--NSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccC----------------CCeEEEeeccC--cchhhhhhhcccCCceeeeccCCceeec
Confidence 45567888999999999985543 33334444332 3889999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 583 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs---~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
.+. .+.......|+....+++|.. ..+++++ .++.+.+||..-.......-..|.+.++++++.|.. .++++|
T Consensus 2279 q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisg 2354 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISG 2354 (2439)
T ss_pred ccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEec
Confidence 977 567778889999999999975 6777765 478999999765433233338899999999999985 577899
Q ss_pred eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 003236 660 DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~ 721 (837)
+.+|.|++||++..+.+..+.. +. ...++++++..|.|+||++.....++.+.
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999999998887777664 33 45789999999999999998876666554
No 281
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.6e-09 Score=132.05 Aligned_cols=209 Identities=16% Similarity=0.239 Sum_probs=164.1
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeE
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQ 687 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~s 687 (837)
..+.....++...-|..+... ..+..+-..|.++.-+|...+++ +|+.||.|++|....+..+..++. ...++.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred ccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 344444445555656555432 23334556788888888877555 999999999999999888887775 466888
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEE
Q 003236 688 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 688 l~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~ 763 (837)
+.|+..|+.+.++..||.+.+|.+. .++....+.|....+.+.|-. ..+++.+ ++.+.+||..-.....+++
T Consensus 2257 ~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~- 2332 (2439)
T KOG1064|consen 2257 SRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH- 2332 (2439)
T ss_pred hhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-
Confidence 9999999999999999999999988 667777888999888888875 5555543 5589999987654445666
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 764 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 764 ~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+|...++++++.|....|++|+.+|.|++||++..+.. .+.. ++ ...++++|+..|.|+||+
T Consensus 2333 -~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 -TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred -eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999887765 2222 44 567899999999999996
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.00 E-value=9.6e-07 Score=93.46 Aligned_cols=218 Identities=7% Similarity=0.022 Sum_probs=143.9
Q ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEc-CCCCeEEEEEeCCCcEEEEECCCCeeeeE
Q 003236 601 TDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (837)
Q Consensus 601 ~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl~t~~~i~~ 678 (837)
.+++|.+ ++.++++-...+.|+.|+..++.... +.... ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence 3678988 66666676678999999998865422 22222 6777777 55 4455 4443 4566679999876655
Q ss_pred Eec------CCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 679 FKC------QSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 679 ~~~------~~~i~sl~~sp~g~~llags~d--------g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
... ....+.+++.++|+.+++.... |.|..++.. ++...... .-...+.|+|+|+++.|+++.
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 553 2346789999998866665543 568888888 55444333 345678999999999887665
Q ss_pred -CCeEEEEEcCCCCC-ce---eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEE
Q 003236 744 -DELVRVWSIGSGSK-GE---CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA 817 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~-~~---~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~ 817 (837)
.+.|..|++..... .. .+..+....+..-.+++..+|+..++....+.|.++|.. ++.+ .+......+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 77899999864332 11 222223223357889999999877777778899999988 6666 34433468999999
Q ss_pred e-CCCCEEEEEE
Q 003236 818 S-TVNGMVASAS 828 (837)
Q Consensus 818 s-pdg~~LaSgs 828 (837)
. ++.+.|+..+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 5 5656555443
No 283
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=8.5e-08 Score=109.26 Aligned_cols=211 Identities=15% Similarity=0.179 Sum_probs=156.5
Q ss_pred eeeeEEEEecCCCCCeEEEEEcCCC------------CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC---
Q 003236 543 FTFTEFQLIPASTSKVESCHFSPDG------------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--- 607 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~V~sl~fSpdg------------~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp--- 607 (837)
.....+.++.-|...|+.|.|.|-. -+||++...|.|.|||...+..+..+..|.++|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 3445678888999999999998731 2578888889999999999999999999999999999977
Q ss_pred CC-CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-------CeeeeEE
Q 003236 608 SL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVF 679 (837)
Q Consensus 608 dg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-------~~~i~~~ 679 (837)
+. ..|+.-....+|.+|+..+++. +..+........|+.+.|-...-++.-+..|.|.+.+.-. ++.....
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 33 4666777788999999999875 5555555567788999997665565666677777665421 1111111
Q ss_pred ecCCC--------------------------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc
Q 003236 680 KCQSG--------------------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 680 ~~~~~--------------------------i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s 733 (837)
..++. ...++|+|.-+.++.......+.++|++-..++....-..+.+.-+.|-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 11000 1235678888888888889999999999888888777677777777887
Q ss_pred CCC--CEEEEEe-CCeEEEEEcCC
Q 003236 734 TSG--EYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 734 pdg--~~Lasgs-Dg~I~IwDl~s 754 (837)
|++ ..|++.. ||.+.||-.+.
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeec
Confidence 765 4677777 99999986543
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.98 E-value=6.2e-08 Score=98.50 Aligned_cols=223 Identities=9% Similarity=0.001 Sum_probs=154.1
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCee
Q 003236 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGAT 686 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~ 686 (837)
...+|+.|+.-|...+|...+..........|...|+-+.=.-+...-+..++.|.++++.++.-+......... -...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 345899999999999999998776556666666554433222222333446777888888888754433322221 3378
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCC-e-EEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce--e
Q 003236 687 QMRFQPRLGRILAAAIENYISILDVETQ-V-CRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--C 760 (837)
Q Consensus 687 sl~~sp~g~~llags~dg~I~iwDl~s~-~-~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~--~ 760 (837)
++.+++++++.++.+....|..|.+... + .+. .....+..-.+..|+.....+|++. ||++.|||++...... .
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 8999999999999999999999988753 2 222 2333445567889999999999999 9999999999764321 1
Q ss_pred EEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEECCCCcEE--------EeccCCC-CeeEEEEeCCCCEEEEEEC
Q 003236 761 IHELSCTGNKFHSCVFHPTFP--SLLVIGCYETLELWNMTENKTL--------TLSAHDK-LVSSLAASTVNGMVASASH 829 (837)
Q Consensus 761 i~~~~~~~~~I~sv~fspdg~--~L~sgs~dg~I~IwDl~s~~~~--------~l~~h~~-~V~sla~spdg~~LaSgs~ 829 (837)
......|.+.+..|.|++.|. .|+..-.-+.+.+.|+++++-. ....|.. .|..-.|+.++..+.+.++
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 223445789999999998773 4555555679999999988744 1223333 3777888887776665554
Q ss_pred C
Q 003236 830 D 830 (837)
Q Consensus 830 D 830 (837)
+
T Consensus 323 ~ 323 (344)
T KOG4532|consen 323 L 323 (344)
T ss_pred h
Confidence 4
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.97 E-value=2.2e-06 Score=90.63 Aligned_cols=218 Identities=14% Similarity=0.171 Sum_probs=147.0
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 560 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 560 sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fs-pdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
+++|.+ ++.++++--..+.|+.|+..++...... ... ...+++. ++ ..|+.+..++ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 678998 7777777777899999999887665422 122 6777777 56 4555555554 55669887653222111
Q ss_pred ---c-cccceEEEEEcCCCCeEEEEEeCC--------CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCC
Q 003236 638 ---G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IEN 704 (837)
Q Consensus 638 ---~-h~~~V~sl~fspdg~~llasgs~D--------g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags-~dg 704 (837)
. .....+.+++.++|. +.++.... |.|+.++.. ++.......-...+.++|+|+++.|+++. ..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 1 346788999999987 55454432 568888888 67666666666788999999999887655 468
Q ss_pred eEEEEECCC--C-----eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 705 YISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 705 ~I~iwDl~s--~-----~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
.|..|++.. . +....+....+....++++.+|+++++.. .+.|.++|.. + +.+..+......+++|+|
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEE
Confidence 899999853 2 11222232333488999999999887766 8899999987 5 566666655568999999
Q ss_pred e-CCCCEEEEEEc
Q 003236 777 H-PTFPSLLVIGC 788 (837)
Q Consensus 777 s-pdg~~L~sgs~ 788 (837)
. ++.+.|++.+.
T Consensus 233 gg~~~~~L~vTta 245 (246)
T PF08450_consen 233 GGPDGKTLYVTTA 245 (246)
T ss_dssp ESTTSSEEEEEEB
T ss_pred ECCCCCEEEEEeC
Confidence 4 67677776653
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.96 E-value=2.8e-07 Score=100.08 Aligned_cols=270 Identities=14% Similarity=0.109 Sum_probs=169.3
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCC-cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg-~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
-+|.+.|.-..+..+++-++.|..|| .|-|||..+++.... ...-+.|.++..+++|++++++.....|.+.|++++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 37888899999999999999999999 899999888765544 4566789999999999999999999999999999977
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs~D----g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
. ...-....+-|+.++|+|++..+.+ +--+ ..|+++|+..++..........-.+-+|.|++++|+.-+.-.
T Consensus 435 v-~~idkS~~~lItdf~~~~nsr~iAY-afP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs-- 510 (668)
T COG4946 435 V-RLIDKSEYGLITDFDWHPNSRWIAY-AFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS-- 510 (668)
T ss_pred e-eEecccccceeEEEEEcCCceeEEE-ecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccc--
Confidence 4 3333445578999999999775543 3333 479999999988877766556667788999999887765411
Q ss_pred EEEECCCCeEEEE--EcCCCCCEEEE----EEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 707 SILDVETQVCRLK--LQGHKNQVHSV----CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 707 ~iwDl~s~~~~~~--l~~h~~~V~sl----~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
.|......+.. +..+..+...+ ..+|-....-... ++.+-+=++.... ..+....+...+++--.
T Consensus 511 --LdPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~-----eP~pVee~dY~sI~~lk 583 (668)
T COG4946 511 --LDPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRV-----EPFPVEEGDYRSIAGLK 583 (668)
T ss_pred --cCCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccc-----cccccCccceeEeeecC
Confidence 11111111111 11111111111 0111111111111 3333322222111 11111111112222112
Q ss_pred CCCE--------------EEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 779 TFPS--------------LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~--------------L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+++. +-..-..|.|.+||+++.+...+ ...++++..|+|++.|.. -.||.++++|
T Consensus 584 ~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~---k~nvss~rlS~D~s~ilv-k~d~kl~~f~ 652 (668)
T COG4946 584 NGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY---KDNVSSFRLSSDGSKILV-KLDGKLRLFD 652 (668)
T ss_pred CCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH---hcccceEEEcCCCCEEEE-EeCCeEEEEe
Confidence 2211 11122346888999888765433 456899999999998888 7899999875
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=4.3e-08 Score=111.56 Aligned_cols=237 Identities=14% Similarity=0.194 Sum_probs=173.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCC------------CEEEEEeCCCeEEEE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL------------SRLATSSADRTVRVW 624 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg------------~~Latgs~Dg~I~IW 624 (837)
.-.++.|+|.| +||.|+. ..|.|.|..+.+.+..++.|...|+.|.|.|.. -+||++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36678999887 8888875 578899999999999999999999999998731 257777788999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCC---CCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEec-CCCEEEE
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPS---KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQP-RLGRILA 699 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspd---g~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~sl~~sp-~g~~lla 699 (837)
|...... +..+..|..+|..++|.+. ...++++-....+|.+|+..+|+....+..... ..|+.+.| +.+++..
T Consensus 95 d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 95 DFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred Eehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 9997653 6777888899999999763 335666666678999999999999988876554 45688888 4566777
Q ss_pred EEcCCeEEEEECCC-------CeEEEEEcCCCC----------------C---------EEEEEEcCCCCE-EEEEeCCe
Q 003236 700 AAIENYISILDVET-------QVCRLKLQGHKN----------------Q---------VHSVCWNTSGEY-LASVSDEL 746 (837)
Q Consensus 700 gs~dg~I~iwDl~s-------~~~~~~l~~h~~----------------~---------V~sl~~spdg~~-LasgsDg~ 746 (837)
.+..|.|.+.+.-. ++....-..|.+ . ...++|+|.-+. ++..-...
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 77778877776431 233333233322 0 012466776544 44444888
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCCeEEEEECCC
Q 003236 747 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 747 I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg--~~L~sgs~dg~I~IwDl~s 799 (837)
+.|+|+.-. .++.......+.+.-+.+-|++ ..|++.-.||.+.||-.+.
T Consensus 254 llv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 254 LLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 999999765 6666666666656666666655 6799999999999997654
No 288
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.92 E-value=8e-07 Score=93.00 Aligned_cols=217 Identities=12% Similarity=0.019 Sum_probs=138.2
Q ss_pred CCCcEEEEeCCCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCC
Q 003236 575 HDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 575 ~Dg~I~VWd~~t~~~~~~l~~h--~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg 652 (837)
.+|+|..||..+++.+.....- .....+. ..+++.++++++.++.|+.||..+++. +..+.. ...+...... .+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~~~-~~ 76 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAPVV-DG 76 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGEEE-ET
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-cccccceeee-cc
Confidence 3689999999999999777431 1222211 233567788889999999999998875 333332 2221111122 22
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeeeEE-ecCC----CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC-
Q 003236 653 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ- 726 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~----~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~- 726 (837)
..++ .+..++.|+.+|..+|+.+... .... ..........++.++++..++.|..+|+++++.+.........
T Consensus 77 ~~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 77 GRVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TEEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 3344 4556789999999999999884 3321 1223333334788999999999999999999998888764422
Q ss_pred ---------EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 727 ---------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 727 ---------V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
+.+-....++ .++.+. ++.+..+|+.++ +.+.... ...+.. ....++..|++++.++.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 1222233345 555555 775344499988 4333222 222222 2457778888888999999999
Q ss_pred CCCCcEE
Q 003236 797 MTENKTL 803 (837)
Q Consensus 797 l~s~~~~ 803 (837)
+++++.+
T Consensus 229 ~~tG~~~ 235 (238)
T PF13360_consen 229 LKTGKVV 235 (238)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 9999875
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.90 E-value=8.8e-07 Score=100.64 Aligned_cols=254 Identities=11% Similarity=0.019 Sum_probs=156.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccce---
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--- 643 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V--- 643 (837)
+..+++++.++.|+.+|.++++.+............... .+..+++++.++.|+.+|..+++. +..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAV-KWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCE-eeeecCCCCccccc
Confidence 456777888999999999999988776543221111122 245677788899999999998875 33322111100
Q ss_pred --EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC--------eeEEEEec--CCCEEEEEEcCCeEEEEEC
Q 003236 644 --MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG--------ATQMRFQP--RLGRILAAAIENYISILDV 711 (837)
Q Consensus 644 --~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~--------i~sl~~sp--~g~~llags~dg~I~iwDl 711 (837)
.+.... +. .++.++.++.+..+|..+|+.+........ ...+..+| .++.+++++.++.+..+|.
T Consensus 197 ~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 111111 23 344566789999999999988776543211 01111122 3567888888999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcC
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~d 789 (837)
.+++.+...... ....+.. ++..|+.++ ++.|..+|..++. .+...... .....+..+ .+..|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999877665321 1112222 344555555 9999999998873 33322211 111222222 24578999999
Q ss_pred CeEEEEECCCCcEE-EeccCCCCee-EEEEeCCCCEEEEEECCCcEEEeC
Q 003236 790 ETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 790 g~I~IwDl~s~~~~-~l~~h~~~V~-sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|.|+++|..+++.+ ........+. ...+. +..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence 99999999999987 3322222232 22332 45788889999998764
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.89 E-value=5.7e-09 Score=117.83 Aligned_cols=207 Identities=20% Similarity=0.292 Sum_probs=154.4
Q ss_pred EEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 548 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
-..+.+|+..|+.+.|.+.. ..|++++.|-.|..||+.+. ..+..+..-...-..|+|+.....+++.+....|+|||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 34578999999999999954 47999999999999999864 34455555556678899998666666677888999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeeEEecCCCeeEEEEecCCCEEEEEE--
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFKCQSGATQMRFQPRLGRILAAA-- 701 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~~~~~~~~i~sl~~sp~g~~llags-- 701 (837)
+..+..++..+++|...|+.++|.......+.+++.|++|++||..+.. ..+.......+..-++.|-|.-.++--
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~ 266 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV 266 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence 9999999999999999999999987666677899999999999987543 334444556677777777554333322
Q ss_pred cCCeEEEEECC---------C-CeEEEEEcCCCCCEEEEEEcCCC----------CEEEEEe-CCeEEEEEcCC
Q 003236 702 IENYISILDVE---------T-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 702 ~dg~I~iwDl~---------s-~~~~~~l~~h~~~V~sl~~spdg----------~~Lasgs-Dg~I~IwDl~s 754 (837)
.++.+.+++.+ + ..+++.|.+|...|...-|-..+ -.|++=+ |..+++|-+.+
T Consensus 267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 22344444332 2 36889999999988776664321 2466666 99999998864
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.86 E-value=1.4e-06 Score=107.73 Aligned_cols=236 Identities=11% Similarity=0.157 Sum_probs=158.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEE----EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVW----DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IW----Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~ 671 (837)
..+.|.++.|.++...|+.+..+|.|.++ +..+.. +.....-...|.+++|+||+..++ ....+++|.+.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~Ella-~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE--IEIVGSVDSGILAASWSPDEELLA-LVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce--eEEEEEEcCcEEEEEECCCcCEEE-EEeCCCEEEEEecc
Confidence 45689999999999999999999999999 555433 444445567899999999987555 44446666654311
Q ss_pred ---------------CCeee--------eEE-------------------------ecCCCeeEEEEecCCCEEEEEEc-
Q 003236 672 ---------------NGSCA--------GVF-------------------------KCQSGATQMRFQPRLGRILAAAI- 702 (837)
Q Consensus 672 ---------------t~~~i--------~~~-------------------------~~~~~i~sl~~sp~g~~llags~- 702 (837)
..+.+ ..| .....-..++|-.||.++++.+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 00000 000 01224467889999999998875
Q ss_pred --C---CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 703 --E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 703 --d---g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D--g~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
. ..|+||+-+ |....+-..-.+--.+++|-|.|++||+.. . ..|.+|.-+.-...+....+......|..
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 2 478999876 554444443334445789999999999887 2 36777765443333333333345678999
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE---Eec-cCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 003236 774 CVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTVNG-MVASASHDKCVKIW 836 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~l~-~h~~~V~sla~spdg~-~LaSgs~DG~I~IW 836 (837)
+.|++|+..|++...|. |.+|-..+.... .+. .....+..+.|+|... .|...+.+|.+.++
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 99999999888877554 999999887754 222 3334456699999653 56666665666544
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.86 E-value=3e-08 Score=106.12 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=114.4
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
..+..++++++..++...+|+...... +..+....++..-...|+.+..+........++....+.+
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeee
Confidence 345567888877777766665544322 1222223333334444444444433333333445556667
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
|....+.+.-.+ +|-..+++|+|+||+++|+|+..|..|+|-.+......-..+.||...|..++..++ +.|++++.
T Consensus 137 ~s~~~~~~~~~l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sG 213 (390)
T KOG3914|consen 137 LSADSGRCEPIL-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSG 213 (390)
T ss_pred ecccccCcchhh-hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCC
Confidence 766665555444 799999999999999999999999999999888655444556789999999999875 35779999
Q ss_pred CCcEEEEECCCCeeeeEEec
Q 003236 662 NSEIRYWSINNGSCAGVFKC 681 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~ 681 (837)
|++|++||+++|+++.++..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999999877664
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=8.1e-09 Score=111.28 Aligned_cols=275 Identities=16% Similarity=0.136 Sum_probs=179.9
Q ss_pred cCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEE
Q 003236 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW 582 (837)
Q Consensus 504 ~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~-Dg~I~VW 582 (837)
....|+.+++.|+.++.|..... .-..-+..++.|.+.|.+++.+-||.++.+++. |..++++
T Consensus 18 tka~fiiqASlDGh~KFWkKs~i----------------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSRI----------------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ehhheEEeeecchhhhhcCCCCc----------------cceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 35578999999999999933221 112345667899999999999999999999887 9999999
Q ss_pred eCCCCeEEEEec--cCCCCeEEEEEcCC-CC-EEEEE-eCCCeEEEEEcCCCCcee-EEeeccccceEEEEEcCCCCeEE
Q 003236 583 CTESFTVKSTLE--EHTQWITDVRFSPS-LS-RLATS-SADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 583 d~~t~~~~~~l~--~h~~~I~~l~fspd-g~-~Latg-s~Dg~I~IWDl~~~~~~~-~~~~~h~~~V~sl~fspdg~~ll 656 (837)
|+++...+.-++ .-.+.+.++ .++. .. .|+++ -.++.|.|+|-....+.. ..-.-|..+|.++.+.+.++. +
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~ 159 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-A 159 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc-e
Confidence 998766653332 222322222 2221 11 33333 347899999977655333 444568999999999999774 4
Q ss_pred EEEeCCCcEEEEECCC------CeeeeEE----------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 657 CSCDNNSEIRYWSINN------GSCAGVF----------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t------~~~i~~~----------~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
++....|.|..|.... .+....+ +......++.|+|++..+.+.+.|..|++++.++++.+..+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 5888889999999873 2222222 22455789999999999999999999999999999888776
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~-~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
..-...- .+-+... +.+-++.-+.....-+.+..++ ...+.++|...+++|+.++--| |+++++.+
T Consensus 240 DE~~t~~---~~q~ks~---------y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 240 DEVLTDA---QYQPKSP---------YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred hccchhh---hhccccc---------cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 5322111 1111111 1111111111101111222222 3446778999999998887765 88888888
Q ss_pred CcEEEeccCC
Q 003236 800 NKTLTLSAHD 809 (837)
Q Consensus 800 ~~~~~l~~h~ 809 (837)
+.++++.+..
T Consensus 307 n~v~ri~gk~ 316 (558)
T KOG0882|consen 307 NTVVRILGKD 316 (558)
T ss_pred CeEEEEeccc
Confidence 8877555443
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=2.1e-09 Score=123.00 Aligned_cols=264 Identities=14% Similarity=0.178 Sum_probs=181.4
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV 621 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I 621 (837)
.|+.+++|+.|+...+|++|+-+.++|++|+..|.|++|++.+|.......+|...|+.+.-+.||..+++.+.-. -.
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 5677888999999999999999999999999999999999999999999999999999999999999887766543 46
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-----CCCeeEEEEecCCCE
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGR 696 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-----~~~i~sl~~sp~g~~ 696 (837)
.+|++.......+.|. .-.++.|+......+ .|.......+||+.++..+.++-. ...-++..|+|....
T Consensus 1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCcccccc----ccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 8999886444444444 345677775432223 344445789999999877665322 223467889998777
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
|+- || .+||++....++.|......+ .-.|+|.|.-++.- -.|||+++. +.++.... -.-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIIN----SEIwD~RTF---~lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIIN----SEIWDMRTF---KLLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEee----chhhhhHHH---HHHhcCcc--ccceEEEe
Confidence 653 33 589999887777776544222 34689999888874 468999986 33433322 12345667
Q ss_pred eCCCCEEEEEEc--C---------------CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEE
Q 003236 777 HPTFPSLLVIGC--Y---------------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 777 spdg~~L~sgs~--d---------------g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSg 827 (837)
...|..++..-. | ...+-||..+.+.+........|..+|-++...+++.-
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 777765444320 0 02333444444444444455566677777766666554
No 295
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=1.2e-08 Score=111.64 Aligned_cols=206 Identities=14% Similarity=0.265 Sum_probs=147.4
Q ss_pred EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 590 ~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
+..+.+|...|..++-..+.+.+++++.|++|++|.+.... .+..++..|..+|.++.|..+.. .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 35677999999998887788899999999999999987432 24567889999999999998754 45455 89
Q ss_pred cEEEEECCCCeeeeEEe---cCCCeeEEEEecC--CCEEEEE-EcCCeEEEEECCCCeEEEEEc-----CCCCCEEEEEE
Q 003236 664 EIRYWSINNGSCAGVFK---CQSGATQMRFQPR--LGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW 732 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~--g~~llag-s~dg~I~iwDl~s~~~~~~l~-----~h~~~V~sl~~ 732 (837)
.|.+||.--+..+.... .++.+..+...++ ...++++ +.+.+|+++|.+....+..++ +....+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999988777655332 1233444444343 3344455 557899999999876655554 23456889999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EECCCCcE
Q 003236 733 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKT 802 (837)
Q Consensus 733 spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I-wDl~s~~~ 802 (837)
.+.|+.++++- .|+|.+.|.+++ +.+............++ .|....++....|.++.+ |...++..
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence 99999999886 999999999998 45554443333332222 344556777777888888 87665543
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.77 E-value=2e-06 Score=97.75 Aligned_cols=255 Identities=8% Similarity=0.061 Sum_probs=152.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCC----------CeE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~----------~I~-~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..+++++.++.|..+|.++++.+........ .+. .+.. ++..++.++.++.++.+|.++++..- .
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W-~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAW-Q 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcc-c
Confidence 45777778889999999999988866542210 000 1111 35577888899999999999887533 3
Q ss_pred eeccccceEE-EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEE--EEec--CCCEEEEEEcCCeEEEEE
Q 003236 636 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQM--RFQP--RLGRILAAAIENYISILD 710 (837)
Q Consensus 636 ~~~h~~~V~s-l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl--~~sp--~g~~llags~dg~I~iwD 710 (837)
.... ..+.+ .... + . .++.+..++.|..+|.++|+.+..+........+ ..+| .++.+++++.++.+..+|
T Consensus 146 ~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 2222 22221 1222 2 3 3445667899999999999999887653221100 0111 235678888899999999
Q ss_pred CCCCeEEEEEcCCCC-------CEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 711 VETQVCRLKLQGHKN-------QVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 711 l~s~~~~~~l~~h~~-------~V~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
..+++.+........ ....+..+| .+..+++++ ++.+..+|..+++ .+...... ....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~--~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREYG--SVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecCC--CccCcE--EEC
Confidence 999887665432110 011111122 233444444 9999999999883 33332211 111222 245
Q ss_pred CEEEEEEcCCeEEEEECCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 781 PSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~s~~~~-~l~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..|++++.++.|+.+|..+++.+ ..... .....+..+. +.+|+.++.||.|.+.|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEE
Confidence 67889999999999999999876 22111 1122222222 45677778888887654
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.76 E-value=3e-06 Score=88.63 Aligned_cols=211 Identities=12% Similarity=0.056 Sum_probs=133.9
Q ss_pred CCeEEEEEcCCCCceeEEeecc-ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 618 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
+|.|..||..+++.....-.+. .....+..+ ++++.++ +++.++.|+.||..+|+.+..+.....+.... ...++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc
Confidence 6889999998877533332211 122221122 2334444 55789999999999999999988755544332 334577
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEE-cCCC---CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc-
Q 003236 697 ILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK- 770 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l-~~h~---~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~- 770 (837)
+++++.++.|+.+|.++++.+... .... ..........++..++++. ++.|..+|++++ +.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence 888888899999999999998884 3221 1122222333377777777 999999999998 555555443322
Q ss_pred ---------eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 771 ---------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 771 ---------I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..-.+..++ .+++++.++.+..+|+.+++.+- ......+..+ ...++..|+.++.|+.|.+||
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1222223344 78888888854444999999662 2223333332 346778888888999999886
No 298
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.1e-06 Score=95.16 Aligned_cols=285 Identities=15% Similarity=0.172 Sum_probs=178.0
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
.+.+.++++-+....+..|. +....-..+|+..+|.....+.++++....-.-+.||.|++|+|.-.. ..|.||
T Consensus 258 SP~EkYLVT~s~~p~~~~~~-----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIy 331 (698)
T KOG2314|consen 258 SPNEKYLVTYSPEPIIVEED-----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIY 331 (698)
T ss_pred CCccceEEEecCCccccCcc-----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEE
Confidence 44445555544443333332 122234567788888776667666555554555789999999998776 579999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEE
Q 003236 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 583 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~lla 657 (837)
+..+..++..-.-.-..|....|+|.+.+||.=.. -..+.+-.+.+... +++..-|.-.=..+.|-.+|+++.+
T Consensus 332 Etpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 332 ETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred ecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEEEE
Confidence 98875555332334467889999999888775432 13455555554332 3333333322234556666664443
Q ss_pred EEeC------C---CcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCC----eEEEEE
Q 003236 658 SCDN------N---SEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIE---NYISILDVETQ----VCRLKL 720 (837)
Q Consensus 658 sgs~------D---g~I~vwDl~t~-~~i~~~~~~~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~----~~~~~l 720 (837)
-... . ..+-|+.++.. -++........|...+|-|.|+.+++.+.. .++.+|.+++. ..+..+
T Consensus 411 kvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~ 490 (698)
T KOG2314|consen 411 KVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL 490 (698)
T ss_pred EEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh
Confidence 2211 1 13455555543 344555667789999999999988776653 57889988732 223333
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC------C
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------E 790 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d------g 790 (837)
. ....+.+.|+|.|.+++.+. .|.+.++|.... .+...-.......+.+.|.|.|+|++++++- .
T Consensus 491 d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 491 D--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred c--ccccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCccccccccceECCCCCEEEEeeehhhhcccc
Confidence 2 34567899999999998876 578999998742 2222222334456788999999999998864 3
Q ss_pred eEEEEECCC
Q 003236 791 TLELWNMTE 799 (837)
Q Consensus 791 ~I~IwDl~s 799 (837)
.-+||+...
T Consensus 566 GYri~tfqG 574 (698)
T KOG2314|consen 566 GYRIFTFQG 574 (698)
T ss_pred ceEEEEeec
Confidence 456666544
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=1.7e-05 Score=84.69 Aligned_cols=230 Identities=14% Similarity=0.115 Sum_probs=158.4
Q ss_pred eEEEEEcC-CCCEEEEEECCCc-EEEEeCCCCeEEEEeccCCCCeE--EEEEcCCCCEEEEEeC-----CCeEEEEEcCC
Q 003236 558 VESCHFSP-DGKLLATGGHDKK-AVLWCTESFTVKSTLEEHTQWIT--DVRFSPSLSRLATSSA-----DRTVRVWDTEN 628 (837)
Q Consensus 558 V~sl~fSp-dg~~Lasgs~Dg~-I~VWd~~t~~~~~~l~~h~~~I~--~l~fspdg~~Latgs~-----Dg~I~IWDl~~ 628 (837)
...++.+| ++..++.+-.-|+ ..+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 5667777877765 67899999998887765444322 4679999999998744 58999999995
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEe-----------------CCCcEEEEECCCCeeeeEEec-----CCCee
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSINNGSCAGVFKC-----QSGAT 686 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs-----------------~Dg~I~vwDl~t~~~i~~~~~-----~~~i~ 686 (837)
.-..+..+..|.-.-..+.+.||++.+++.-+ .+-.+.+.|..+|+.+..... ...+.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 55567788888877888999999977765432 123566778888888877554 23588
Q ss_pred EEEEecCCCEEEEEEcCC-------eEEEEECCCCeEEEEEc-------CCCCCEEEEEEcCCCCEEEEEe--CCeEEEE
Q 003236 687 QMRFQPRLGRILAAAIEN-------YISILDVETQVCRLKLQ-------GHKNQVHSVCWNTSGEYLASVS--DELVRVW 750 (837)
Q Consensus 687 sl~~sp~g~~llags~dg-------~I~iwDl~s~~~~~~l~-------~h~~~V~sl~~spdg~~Lasgs--Dg~I~Iw 750 (837)
.+++..+|..++..-..+ -|.+++.... +..+. .....|-+|+++.++.++++++ .+.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 899999977666655443 2444444332 22221 2346899999999999998888 7799999
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 751 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 751 Dl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
|..++ ..+.... -..+..++..+++ +++.+..|.+...+
T Consensus 245 d~~tg---~~~~~~~--l~D~cGva~~~~~--f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 245 DAATG---RLLGSVP--LPDACGVAPTDDG--FLVSSGQGQLIRLS 283 (305)
T ss_pred ECCCC---CEeeccc--cCceeeeeecCCc--eEEeCCCccEEEcc
Confidence 99988 4444332 2334555555555 55555555544433
No 300
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.71 E-value=8.3e-06 Score=91.26 Aligned_cols=259 Identities=14% Similarity=0.118 Sum_probs=155.6
Q ss_pred cCCCCEEEEEE---------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 564 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 564 Spdg~~Lasgs---------~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|++++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68888877742 246789999999766654443 67789999999999999885 67899999876643222
Q ss_pred Eeecc----------------ccceEEEEEcCCCCeEEEEEeCCCc----------------------------------
Q 003236 635 TFTGH----------------STTVMSLDFHPSKEDLLCSCDNNSE---------------------------------- 664 (837)
Q Consensus 635 ~~~~h----------------~~~V~sl~fspdg~~llasgs~Dg~---------------------------------- 664 (837)
+..+. -+.-..+.|+||+..+++.--.+..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22220 1123568899999887765443333
Q ss_pred -EEEEECCCCeeeeEE-e-----cCCCeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEEcC-CCCCE---E
Q 003236 665 -IRYWSINNGSCAGVF-K-----CQSGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQG-HKNQV---H 728 (837)
Q Consensus 665 -I~vwDl~t~~~i~~~-~-----~~~~i~sl~~sp~g~~llags~d-----g~I~iwDl~s~~~~~~l~~-h~~~V---~ 728 (837)
+.|+|+.+++....- . ...-+..+.|.+++..+++.-.+ -.+.++|..++.+...+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 334455444432111 1 11236778899988855554432 2577788877644333222 23333 2
Q ss_pred EEEEc-CCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEEC
Q 003236 729 SVCWN-TSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY-----ETLELWNM 797 (837)
Q Consensus 729 sl~~s-pdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~s-v~fspdg~~L~sgs~d-----g~I~IwDl 797 (837)
.+.|. +++..++..+ || .|.+++...+ ....+....-.|.. +.++++++.|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 45554 6666555444 77 5666666654 23455555566644 6788988877766553 26777788
Q ss_pred C-CCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 798 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 798 ~-s~~~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
. .+....+......-..+.|||++++++..+
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 677766665544446999999999877544
No 301
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.71 E-value=8.3e-06 Score=84.70 Aligned_cols=227 Identities=17% Similarity=0.197 Sum_probs=133.1
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCC--CeEEEEeccCC---CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~---~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
++.+.||++||+.- |..|.|-..++ ...+.+....+ -.=..++|+||+.+||.+...|+|++||+.... +..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eEE
Confidence 56788999988764 66777765443 12222222222 234679999999999999999999999998533 222
Q ss_pred ee-------ccccceEEEEEcCCC-----CeEEEEEeCCCcEEEEECCC-----CeeeeEEec----CCCeeEEEEecCC
Q 003236 636 FT-------GHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVFKC----QSGATQMRFQPRL 694 (837)
Q Consensus 636 ~~-------~h~~~V~sl~fspdg-----~~llasgs~Dg~I~vwDl~t-----~~~i~~~~~----~~~i~sl~~sp~g 694 (837)
+. .....|..+.|.+-. ...|+.-..+|.++-|-+.. ......+.. ..+|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 21 123456677776432 22344455577777776532 233334432 5689999999999
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE--EEe-CC------eEEEEEcCCCCCceeEEEee
Q 003236 695 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA--SVS-DE------LVRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 695 ~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~La--sgs-Dg------~I~IwDl~s~~~~~~i~~~~ 765 (837)
+.|++|+.... +++. -+.....+++-..-.+..+.. +.. |+ +..+|.+-+. .......
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~ 226 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQG 226 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccc
Confidence 98888876432 0000 001111222222211111111 111 11 1123332221 1222223
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
.....|..+.++|||..|++...+|.|.+|++.+-+..
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 34678999999999999999999999999999887655
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.67 E-value=2.8e-06 Score=86.68 Aligned_cols=242 Identities=11% Similarity=0.052 Sum_probs=158.5
Q ss_pred cccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCC-CEEEEE
Q 003236 495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATG 573 (837)
Q Consensus 495 ~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg-~~Lasg 573 (837)
..+.+..+.....+++.|+..+...+|....... .......|...|+-+.=.-|. --+..+
T Consensus 73 ~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~------------------h~~~cd~snn~v~~~~r~cd~~~~~~i~ 134 (344)
T KOG4532|consen 73 MTFTPGSFINKCVTLADGGASGQFDLFACNTNDG------------------HLYQCDVSNNDVTLVKRYCDLKFPLNIA 134 (344)
T ss_pred ccccchHhhccccEEEeccccceeeeecccCccc------------------ceeeecccccchhhhhhhcccccceeec
Confidence 4445556677788899998888999985543210 112223344433322111121 235567
Q ss_pred ECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee-E-EeeccccceEEEEEcCC
Q 003236 574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-R-TFTGHSTTVMSLDFHPS 651 (837)
Q Consensus 574 s~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~-~-~~~~h~~~V~sl~fspd 651 (837)
+.|.++++.+++.+.....+....-.+.++++++|++++++.+....|..|.++...+.+ . .....+..-.+..|+..
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC
Confidence 788888888877654444443222348899999999999999999999999998654423 3 23334455677888877
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeeeEE------ecCCCeeEEEEecCCC--EEEEEEcCCeEEEEECCCCeEEEEEcC-
Q 003236 652 KEDLLCSCDNNSEIRYWSINNGSCAGVF------KCQSGATQMRFQPRLG--RILAAAIENYISILDVETQVCRLKLQG- 722 (837)
Q Consensus 652 g~~llasgs~Dg~I~vwDl~t~~~i~~~------~~~~~i~sl~~sp~g~--~llags~dg~I~iwDl~s~~~~~~l~~- 722 (837)
. ..+|++..||++.|||++........ .+.+.+..+.|++.|. .|+..-.-+.+.+.|+++++....+..
T Consensus 215 ~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 215 D-LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred c-ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 4 47889999999999999875433222 1456799999998654 344444458999999999855443322
Q ss_pred ------CCC-CEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 723 ------HKN-QVHSVCWNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 723 ------h~~-~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
|.. .|..-+|+.++.-+.+.++..+.-|++.+.
T Consensus 294 ~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~sr 333 (344)
T KOG4532|consen 294 DDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSR 333 (344)
T ss_pred ccccccccccccccccccCCCcccccccchhhheeecccc
Confidence 222 377788888887777776666677776554
No 303
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.64 E-value=1.8e-07 Score=96.82 Aligned_cols=233 Identities=18% Similarity=0.259 Sum_probs=147.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce----eEEeeccc------------cceEEEEEcCC-CCeEEEE
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCS 658 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~----~~~~~~h~------------~~V~sl~fspd-g~~llas 658 (837)
..+.|+++.|...|.||++|...|.|.+|.-+....+ ...+.+|. ..|..|.|..+ +..-+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 4467999999999999999999999999986653311 12233443 35778887654 3333445
Q ss_pred EeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE---------cCCeEEEEECCCCeEEEEE-cCCCCCEE
Q 003236 659 CDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA---------IENYISILDVETQVCRLKL-QGHKNQVH 728 (837)
Q Consensus 659 gs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags---------~dg~I~iwDl~s~~~~~~l-~~h~~~V~ 728 (837)
.+.|.+|++|.+.......+.. .....-.-+|.++-+.+.. .|..|..+ +.+.+ ..|...|.
T Consensus 105 stNdktiKlWKiyeknlk~va~--nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaNaH~yhiN 176 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAE--NNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYANAHPYHIN 176 (460)
T ss_pred ecCCceeeeeeeecccchhhhc--cccccccccccCCCcCCHHHhhcccccccceEEEec------cceeccccceeEee
Confidence 6679999999997543221111 1111111112111111100 01111111 11112 45888899
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEECCCCcE
Q 003236 729 SVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT 802 (837)
Q Consensus 729 sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~-----~~I~sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~ 802 (837)
++.|..|...++++.|-.|.+|++.-....-.+..++.|. ..|++..|+|.. ..+...++.|.|++-|++...+
T Consensus 177 SiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 177 SISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred eeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhh
Confidence 9999999999999889999999987654333444444443 457888999975 4566777889999999973221
Q ss_pred E---------Ee--------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 803 L---------TL--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 803 ~---------~l--------~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
. .+ .+....|..+.|+++|++|++-+. -+|+|||
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 1 11 122356889999999999987654 5799997
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.4e-06 Score=93.27 Aligned_cols=250 Identities=14% Similarity=0.148 Sum_probs=149.6
Q ss_pred EEEEeCCCCeEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEE
Q 003236 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 579 I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~lla 657 (837)
|++.+..+.+....+..|...|.+++|+|..+ ++..++.+.+|+|.|+++.. .+..+..+ ..+++++|+-+..++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence 77777777777777888999999999999766 78899999999999999854 46677766 88999999999999999
Q ss_pred EEeCCCcEEEEECCCCeeee-EEec---CCCeeEEEE------ecCCCEEEEEEcCCeEEEEECC----CCeEEEEEcCC
Q 003236 658 SCDNNSEIRYWSINNGSCAG-VFKC---QSGATQMRF------QPRLGRILAAAIENYISILDVE----TQVCRLKLQGH 723 (837)
Q Consensus 658 sgs~Dg~I~vwDl~t~~~i~-~~~~---~~~i~sl~~------sp~g~~llags~dg~I~iwDl~----s~~~~~~l~~h 723 (837)
+|..+|.|.|||++..+-.. .+.. ..+|..++. .+.++.+++...+ +..|++. ...++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence 99999999999998654221 1111 123333332 2334444444332 2233322 222222222 2
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CC---eEEE----EEcCCCCCceeEE-EeecC-CCc------eEEEEEeCCCCEEEEE
Q 003236 724 KNQVHSVCWNTSGEYLASVS--DE---LVRV----WSIGSGSKGECIH-ELSCT-GNK------FHSCVFHPTFPSLLVI 786 (837)
Q Consensus 724 ~~~V~sl~~spdg~~Lasgs--Dg---~I~I----wDl~s~~~~~~i~-~~~~~-~~~------I~sv~fspdg~~L~sg 786 (837)
.+...++.+++-.+.++... +. .++. -|..++ ..+. .-..+ +.. -..+.-.++..+|+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG---~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG---FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC---ceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 34444555555444444332 11 1111 011111 1111 11111 111 1112223444555544
Q ss_pred Ec-CCeEEEEECCCCcEEEeccCCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 003236 787 GC-YETLELWNMTENKTLTLSAHDKLVSSLAASTV--NGMVASASHDKCVKIWK 837 (837)
Q Consensus 787 s~-dg~I~IwDl~s~~~~~l~~h~~~V~sla~spd--g~~LaSgs~DG~I~IWd 837 (837)
+. .+.+.+||..+.+.+.......+|.+++...- +.+|++-. |..++||+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred cCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 43 45899999999999976677788988876543 34666664 45677764
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.62 E-value=5.5e-07 Score=91.44 Aligned_cols=200 Identities=12% Similarity=0.159 Sum_probs=122.4
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
+..++++..+..+.++.. ++.+....|+-..+ ...+.++..|.++-.+-+.+-.+..++++..||.+.+++.+
T Consensus 47 ~~~lf~~e~~~~~ss~g~-----~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~ 119 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLGK-----GRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTD 119 (319)
T ss_pred hheeecccchhheeeecc-----ceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEech
Confidence 345566666666655521 22222233332222 23344555666665566666677789999999999999977
Q ss_pred CCe-EEEEeccCCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 586 SFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 586 t~~-~~~~l~~h~~~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
... ....+..-...-.+.++...++.|.++.. -+..++|++...+..+.... ....|.+++-+|.-..++++|
T Consensus 120 ~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cg 198 (319)
T KOG4714|consen 120 KDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCG 198 (319)
T ss_pred HHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEe
Confidence 521 11222111111122333334454444321 23456677664332222222 223499999999989999999
Q ss_pred eCCCcEEEEECCCCeeeeEE--ecCCCeeEEEEecC-CCEEEEEEcCCeEEEEECCC
Q 003236 660 DNNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPR-LGRILAAAIENYISILDVET 713 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~--~~~~~i~sl~~sp~-g~~llags~dg~I~iwDl~s 713 (837)
+.||.|-+||.+.......+ .+..++..+-|+|. ...|+++++||.+..||..+
T Consensus 199 t~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 199 TDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999999987433222 24677999999994 56799999999999999875
No 306
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.60 E-value=1.1e-05 Score=93.37 Aligned_cols=179 Identities=11% Similarity=0.045 Sum_probs=120.9
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-------------------------
Q 003236 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI------------------------- 702 (837)
Q Consensus 648 fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~------------------------- 702 (837)
+.++|..+.......+.+.++|..+.+....+........+.++++++++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 4456655544555567788889998888888887777788889999888887761
Q ss_pred ---------------CCeEEEEECCC----C-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---
Q 003236 703 ---------------ENYISILDVET----Q-VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK--- 757 (837)
Q Consensus 703 ---------------dg~I~iwDl~s----~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~--- 757 (837)
++.|.++|.++ + ..+..+. -......+.++|||+++++++ +.+|.|+|+.+...
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 24577777776 2 3333333 455678899999999999888 88999999987531
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC----------CcEE-EeccCCC-----CeeEE
Q 003236 758 ------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE----------NKTL-TLSAHDK-----LVSSL 815 (837)
Q Consensus 758 ------~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s----------~~~~-~l~~h~~-----~V~sl 815 (837)
...+.+... +..-...+|+++|....+.--|..|..||+.. ..++ ++.-|-. ....=
T Consensus 359 ~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 359 GKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred ccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 012222222 33445678899998777777889999999876 2333 2333322 22222
Q ss_pred EEeCCCCEEEEEE
Q 003236 816 AASTVNGMVASAS 828 (837)
Q Consensus 816 a~spdg~~LaSgs 828 (837)
.-.+||++|++..
T Consensus 438 t~~~dgk~l~~~n 450 (635)
T PRK02888 438 TKEADGKWLVSLN 450 (635)
T ss_pred cCCCCCCEEEEcc
Confidence 3367888888764
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=4.8e-05 Score=81.27 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=150.8
Q ss_pred CeEEEEEcC-CCCEEEEEeCCC-eEEEEEcCCCCceeEEeeccccce--EEEEEcCCCCeEEEEE----eCCCcEEEEEC
Q 003236 599 WITDVRFSP-SLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTV--MSLDFHPSKEDLLCSC----DNNSEIRYWSI 670 (837)
Q Consensus 599 ~I~~l~fsp-dg~~Latgs~Dg-~I~IWDl~~~~~~~~~~~~h~~~V--~sl~fspdg~~llasg----s~Dg~I~vwDl 670 (837)
....++.+| ....++.+-.-| ...+||..++.... .+....+.- -.-+|++||..++++- ...|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~-~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ-RLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee-EEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 445677888 456666676655 56889998876532 322222211 1367999998776553 23589999999
Q ss_pred C-CCeeeeEEec-CCCeeEEEEecCCCEEEEEEc------------------CCeEEEEECCCCeEEEE--E--cCCCCC
Q 003236 671 N-NGSCAGVFKC-QSGATQMRFQPRLGRILAAAI------------------ENYISILDVETQVCRLK--L--QGHKNQ 726 (837)
Q Consensus 671 ~-t~~~i~~~~~-~~~i~sl~~sp~g~~llags~------------------dg~I~iwDl~s~~~~~~--l--~~h~~~ 726 (837)
. ....+..+.. .-+...+.+.|++..|+++.. +..+.+.|..+++.+.. + ..|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 9 5666666664 335677889999988777643 22577788899987766 4 237789
Q ss_pred EEEEEEcCCCCEEEEEe-CC-------eEEEEEcCCCCCceeEEE----eecCCCceEEEEEeCCCCEEEEEEcCC-eEE
Q 003236 727 VHSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCYE-TLE 793 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs-Dg-------~I~IwDl~s~~~~~~i~~----~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~ 793 (837)
|..+++.++|..++..- .+ .|.+++.... ...+.. ...-.+.+-+|+++.++..+++.+--+ .+.
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 99999999999888765 33 3555544332 111110 122357899999999999887777655 899
Q ss_pred EEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 794 LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 794 IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
+||..+++++....- ..+..++..+++ +++|.+.
T Consensus 243 ~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 243 VWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEECCCCCEeecccc-CceeeeeecCCc-eEEeCCC
Confidence 999999998854332 235666666655 5655544
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.58 E-value=6.8e-07 Score=90.79 Aligned_cols=195 Identities=13% Similarity=0.126 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE------------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~------------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
|+.+.|+.+ ..|+++..++.+..+..-.+.++ .++..|.++-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 556666643 35667766666655544333322 22223333322223333467799999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeee-EEecCCCeeEEEEecCCCEE-E
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAG-VFKCQSGATQMRFQPRLGRI-L 698 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~-~~~~~~~i~sl~~sp~g~~l-l 698 (837)
.+........+..-...-.+.++...++ ++.++. .-+..+.|+++..+... .......+.+++-+|....+ +
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGN-SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred chHHHhhhhhcccccccccccceeeccc-EEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 8752211111111111122222333333 222221 12345566665433222 22223458899999976554 5
Q ss_pred EEEcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCC
Q 003236 699 AAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~-~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s 754 (837)
+|+.||.+.+||.+... ++..+..|+.+|..+-|+| ++..|++++ ||.+--||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 56678999999999873 4445678999999999998 467788888 99999999764
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.7e-06 Score=92.78 Aligned_cols=246 Identities=14% Similarity=0.129 Sum_probs=153.8
Q ss_pred eEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~I 623 (837)
.....+.+|...|..++|||..+ +|..++.+.+|.|.|+++..++..+..| ..+++++|.-| ..+|+.|...|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 33457788999999999999776 7889999999999999999999888877 78999999886 456777888999999
Q ss_pred EEcCCCCceeEEeec--cccceEEEEEcCCC-----CeEEEEEeCCCcEEEEECCC----CeeeeEEecCCCeeEEEEec
Q 003236 624 WDTENPDYSLRTFTG--HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN----GSCAGVFKCQSGATQMRFQP 692 (837)
Q Consensus 624 WDl~~~~~~~~~~~~--h~~~V~sl~fspdg-----~~llasgs~Dg~I~vwDl~t----~~~i~~~~~~~~i~sl~~sp 692 (837)
||++..+..+..+.+ ...+|..++.-+-+ ..+++.... .+..|++.- ..++..+...+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 999977654444433 23455555443221 224433332 245566542 22333333345566677777
Q ss_pred CCCEEEEEEcCC-------eEE-EEECCCCeEEEEEc-CC-CCCE------EEEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 003236 693 RLGRILAAAIEN-------YIS-ILDVETQVCRLKLQ-GH-KNQV------HSVCWNTSGEYLASVS--DELVRVWSIGS 754 (837)
Q Consensus 693 ~g~~llags~dg-------~I~-iwDl~s~~~~~~l~-~h-~~~V------~sl~~spdg~~Lasgs--Dg~I~IwDl~s 754 (837)
..+.+++....+ .|. -.|..++..+...+ ++ .+.- ..+.-.++.++|+... .+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 667777665531 111 12333444333222 12 1110 1122234566676655 45899999998
Q ss_pred CCCceeEEEeecCCCceEEEEEe-CCCCEEEEEEcCCeEEEEECC
Q 003236 755 GSKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fs-pdg~~L~sgs~dg~I~IwDl~ 798 (837)
. +.+.++... .+|.+++.. -++..++..-.|..++||..+
T Consensus 421 ~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 421 F---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred h---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 7 556665543 667666543 345445555566678887654
No 310
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=1e-05 Score=97.29 Aligned_cols=244 Identities=12% Similarity=0.150 Sum_probs=153.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---Cc
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DY 631 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~---~~ 631 (837)
.+.|.++.|..++.-++.+..+|.|.+.|.++.... ....-...|.+++|+||...++..+.++++.+-+-.=. +.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 467999999999999999999999999988775433 33345678999999999999999998888776543210 00
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecCCCEEEEEEc----C-Ce
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAI----E-NY 705 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~sl~~sp~g~~llags~----d-g~ 705 (837)
.+..-....+....+-|-.....+ -|+ .|.....+... .+.......++.-+.|.|--||.++++... + ..
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred ccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 010000011222333343221111 111 12111111111 111111223455677999999988887432 3 78
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
|+|||-+ +..-..-....+--.+++|-|.|.++++.. |+.|.+|.-+.-........+.....++..++|+.++.
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 9999987 433222222334456899999999999854 66799998665444344444555555699999999999
Q ss_pred EEEEE---EcCCeEEEEECCCCcEE
Q 003236 782 SLLVI---GCYETLELWNMTENKTL 803 (837)
Q Consensus 782 ~L~sg---s~dg~I~IwDl~s~~~~ 803 (837)
.|++. .....|++|-+.+....
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEE
Confidence 88883 33446999998876644
No 311
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.57 E-value=9.7e-07 Score=94.81 Aligned_cols=157 Identities=19% Similarity=0.213 Sum_probs=109.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeeccccceEEEEEcCCCCeEEEE--EeCCCcEEEEECCCCe
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCS--CDNNSEIRYWSINNGS 674 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~h~~~V~sl~fspdg~~llas--gs~Dg~I~vwDl~t~~ 674 (837)
.+..+..++++++||++..++.+.++++..... .......-...-+.+.|..+....+++ .++...+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 344556677888888888888877777765432 111111122233444444443433322 3344556666666677
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003236 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 752 (837)
Q Consensus 675 ~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 752 (837)
+...+.+-+.++.++|+||+.+|+++..|..|+|-.......+..+. ||+.-|..++.-++.. |++++ |++|++||+
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDI 222 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEec
Confidence 77777778889999999999999999999999998877655555543 6999999999976655 55555 999999999
Q ss_pred CCCC
Q 003236 753 GSGS 756 (837)
Q Consensus 753 ~s~~ 756 (837)
.+++
T Consensus 223 ~sgk 226 (390)
T KOG3914|consen 223 TSGK 226 (390)
T ss_pred ccCC
Confidence 9984
No 312
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.52 E-value=5.4e-05 Score=78.78 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=111.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-------cCCCCeEEEEEcCC------CCEEEEEeCCCeEEE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPS------LSRLATSSADRTVRV 623 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-------~h~~~I~~l~fspd------g~~Latgs~Dg~I~I 623 (837)
.=.-++||||+.+||.+...|+|+|||+.... +..+. .-...|..+.|.+. ...|++-..+|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 35679999999999999999999999987533 33332 12356777777653 224677778888888
Q ss_pred EEcCCC---C-ceeEEe---eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 624 WDTENP---D-YSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 624 WDl~~~---~-~~~~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
|-+..+ + .....+ ..+...|.++.|+|....++++|.....-..+. ....++++-++..+..+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEEEcCCCCc
Confidence 876421 1 112222 224678999999999776665554433110100 01122232222222221
Q ss_pred EE--EEEcCC------eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 697 IL--AAAIEN------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 697 ll--ags~dg------~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
.. +...|+ +..+|.+-+.+...........|..+..+|||.+|++.+ +|.|.+|++.+-
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 11 111111 112233222222222223567899999999999999999 999999999775
No 313
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.52 E-value=1.1e-05 Score=92.10 Aligned_cols=222 Identities=12% Similarity=0.132 Sum_probs=126.5
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 003236 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~ 674 (837)
...-....+.++|++++++++ .||...||...... -. ..+.-..++|...+. +++-.....|.++.--+.+
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--~k----~~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--NK----AFGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--EE----EEEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--cc----ccCceeEEEEecCcc--EEEEECCCeEEEEEcCccc
Confidence 344557899999999999885 57777788743221 11 124456788888543 4456557889997433333
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003236 675 CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 675 ~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s 754 (837)
....+..+..+..+.. |. ++....++.|.+||+.+++.+..+... .|..|.|++++.+++..++..+.|++...
T Consensus 101 ~~k~i~~~~~~~~If~---G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG---GN-LLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp TT-----SS-EEEEE----SS-SEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred cceEEcCCcccceEEc---Cc-EEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 3345554444444443 44 444455569999999999999998743 48999999999999999988888887653
Q ss_pred C--------CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEE
Q 003236 755 G--------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 755 ~--------~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaS 826 (837)
. .....+..+......|.+.+|..+ .++..+.. .|+. +..|+...+..-+.++.=+.+.+..+.|+.
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence 2 001133333333678889999887 44444444 7766 556666665555677888888887788999
Q ss_pred EECCCcEEEe
Q 003236 827 ASHDKCVKIW 836 (837)
Q Consensus 827 gs~DG~I~IW 836 (837)
...|+.|..+
T Consensus 250 ~Dr~~~v~~~ 259 (443)
T PF04053_consen 250 IDRDGNVISY 259 (443)
T ss_dssp E-TT--EEEE
T ss_pred EECCCCEEEE
Confidence 9999888764
No 314
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.49 E-value=0.00032 Score=80.21 Aligned_cols=243 Identities=14% Similarity=0.096 Sum_probs=140.5
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----------eE
Q 003236 558 VESCHFSPDGKLLATG-GHDK----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 621 (837)
Q Consensus 558 V~sl~fSpdg~~Lasg-s~Dg----~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-----------~I 621 (837)
+..+++||||++||.+ +..| .|+|+|+++++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 4467899999998876 3333 59999999998775321111 123499999988877665433 38
Q ss_pred EEEEcCCCCce-eEEeeccccc--eEEEEEcCCCCeEEEEEeCCC---cEEEEECCCC-----eeeeEEecCCCeeEEEE
Q 003236 622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNNS---EIRYWSINNG-----SCAGVFKCQSGATQMRF 690 (837)
Q Consensus 622 ~IWDl~~~~~~-~~~~~~h~~~--V~sl~fspdg~~llasgs~Dg---~I~vwDl~t~-----~~i~~~~~~~~i~sl~~ 690 (837)
+.|++.+.... ...+...... ...+..++++..+++...... .|++.|+..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888876543 2344433332 568889999998887665443 5888898875 33333333334443333
Q ss_pred ecCCCEEEEEEc----CCeEEEEECCCCe---EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCce
Q 003236 691 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE 759 (837)
Q Consensus 691 sp~g~~llags~----dg~I~iwDl~s~~---~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~ 759 (837)
+. +..++..+. .+.|...++.... ....+..+...+.-..+...+.+|+... ++ .|+++++..+ .
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~ 360 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K 360 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence 33 444444433 3578888888764 2334555655433333334455555554 55 7999999822 2
Q ss_pred eEEEee-cCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEe
Q 003236 760 CIHELS-CTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL 805 (837)
Q Consensus 760 ~i~~~~-~~~~~I~sv~fspdg~~L~sgs~d----g~I~IwDl~s~~~~~l 805 (837)
....+. ...+.|..+...++++.+...-.. .+|+.||+.+++...+
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 333322 233445666666666554443322 3899999999887643
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=7.8e-08 Score=110.53 Aligned_cols=200 Identities=17% Similarity=0.268 Sum_probs=149.5
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC-cE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI 665 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg-~I 665 (837)
.+...+|..|+...+|++|+-+.++|++|+..|.|++|++.++.. ...+.+|...|+-+.-+.+|..++.+++... -.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence 455677888999999999999999999999999999999998764 6778889999999999999998886666554 57
Q ss_pred EEEECCC-CeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-cC---CCCCEEEEEEcCCCCEEE
Q 003236 666 RYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QG---HKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 666 ~vwDl~t-~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l-~~---h~~~V~sl~~spdg~~La 740 (837)
.+|++.. +...+.| .+-.++.|+.....-+.|+......+||+.++.++.++ .+ ....-++..|+|+..+|+
T Consensus 1170 aLW~~~s~~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HHhccccccCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 7899864 3344444 34567778776555566777788999999998765552 22 222336789999998876
Q ss_pred EEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 741 SVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 741 sgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
- || .+||++.. ..++.|.... ....-.|+|.|..+++-+ .|||+++.+.+
T Consensus 1247 n--dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 N--DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred e--Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 4 55 48999877 4555554332 222347999998887754 58999887765
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=4.2e-06 Score=96.72 Aligned_cols=182 Identities=13% Similarity=0.212 Sum_probs=132.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i 676 (837)
.+.++|++++ ++.|+.|+.+|.|++++....- .+...|... ..+|. ++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc---ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 4567777775 5789999999999999987531 333444433 34454 6779999999999999999999
Q ss_pred eEEecCCCeeEEEEecC-----CCEEEEEEcCCeEEEEECCC--CeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003236 677 GVFKCQSGATQMRFQPR-----LGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 749 (837)
Q Consensus 677 ~~~~~~~~i~sl~~sp~-----g~~llags~dg~I~iwDl~s--~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~I 749 (837)
..+....++.+++++|+ .+.+++|+..| +.++.-+- .+....+....++|.+++|. |.+||-++|-.|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 99999999999999997 56789998888 77775431 12222455677899999995 88999999878999
Q ss_pred EEcCCCCCceeEEEeecCCCc------eEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 750 WSIGSGSKGECIHELSCTGNK------FHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 750 wDl~s~~~~~~i~~~~~~~~~------I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
||+.+. ..+..+...... ...+.|.++.+ ++.|...+|+|..++
T Consensus 184 yd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIK 233 (846)
T ss_pred Eecccc---ceeeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEe
Confidence 999887 333333322222 24466776654 444555578888876
No 317
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.48 E-value=0.00029 Score=77.62 Aligned_cols=269 Identities=14% Similarity=0.086 Sum_probs=140.4
Q ss_pred EEEcCCCCEEEEEE-CCC--cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 561 CHFSPDGKLLATGG-HDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 561 l~fSpdg~~Lasgs-~Dg--~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
=+|.+||+.|+.++ .|| .+++.|+.+++...-..+.........++++++.|+....+..|+..|+.+.+. ...+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence 36788997665554 455 566668888877655443223333566778888887776677899999998664 34455
Q ss_pred ccccceEEEEEc--CCCCeEEEEEe----------------------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecC
Q 003236 638 GHSTTVMSLDFH--PSKEDLLCSCD----------------------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR 693 (837)
Q Consensus 638 ~h~~~V~sl~fs--pdg~~llasgs----------------------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~ 693 (837)
.....+-...|. .++. .++..- ..+.|...|+.+|+....+....-+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 455555445554 3333 332221 123577788999998888888888999999998
Q ss_pred CCEEEEEEcCC-----eEEEEECCC-CeEEEEEcCCC--CCEEEEEEcCCCCEEEEEe---C---CeEEEEEcCCCCCce
Q 003236 694 LGRILAAAIEN-----YISILDVET-QVCRLKLQGHK--NQVHSVCWNTSGEYLASVS---D---ELVRVWSIGSGSKGE 759 (837)
Q Consensus 694 g~~llags~dg-----~I~iwDl~s-~~~~~~l~~h~--~~V~sl~~spdg~~Lasgs---D---g~I~IwDl~s~~~~~ 759 (837)
...+++-|-+| .-+||-+++ +.....+..+. ..+..=-|.+||..|.-.+ . ..|.-+|+.++.. .
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence 88877777654 124554432 33333333332 2344557899998776533 2 2577778877643 1
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEECCCCcEEEeccCCC---------C--e
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK---------L--V 812 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg----------------~I~IwDl~s~~~~~l~~h~~---------~--V 812 (837)
.+... .....+..++||..++-=++|. -|+++++..+....+..|.. . =
T Consensus 278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence 22111 2344556678888554433332 56778888877654444421 1 2
Q ss_pred eEEEEeCCCCEEEE-EECCCcEEEe
Q 003236 813 SSLAASTVNGMVAS-ASHDKCVKIW 836 (837)
Q Consensus 813 ~sla~spdg~~LaS-gs~DG~I~IW 836 (837)
-.+.|+||+++|+. +...|...||
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEE
Confidence 45799999997664 4467776665
No 318
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00018 Score=81.28 Aligned_cols=251 Identities=12% Similarity=0.132 Sum_probs=175.5
Q ss_pred EEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEE
Q 003236 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 579 I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~lla 657 (837)
+.+++..+......+..+. ....+...+++..++... ....+.+.+... .........-...-..+++++.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 6666666666555554343 566778888875554443 233455555542 2111111111144567888999888888
Q ss_pred EEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc---CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC
Q 003236 658 SCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWNT 734 (837)
Q Consensus 658 sgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~---dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp 734 (837)
....+..|.+.|..+.+.............++++++++.++++.. ++.+.++|..+.+.......-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888789999999998888888887778889999999998888776 689999999999888775544344 8999999
Q ss_pred CCCEEEEEe--CCeEEEEEcCCCCCceeEE-E---eecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEe
Q 003236 735 SGEYLASVS--DELVRVWSIGSGSKGECIH-E---LSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTL 805 (837)
Q Consensus 735 dg~~Lasgs--Dg~I~IwDl~s~~~~~~i~-~---~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~~l 805 (837)
+|..++.+. ++.|.++|..... ... . .......-..+.+++++.++++..... .+...|..++.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~---v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNS---VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcc---eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 999887777 8899999976652 221 1 112234456789999999887776654 899999999888754
Q ss_pred c-cCCC-CeeEEEEeCCCCEEEEEECC-CcEEE
Q 003236 806 S-AHDK-LVSSLAASTVNGMVASASHD-KCVKI 835 (837)
Q Consensus 806 ~-~h~~-~V~sla~spdg~~LaSgs~D-G~I~I 835 (837)
. .-.. ....+.++|+|+.+.+.... +.|.+
T Consensus 247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred ccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 2 2222 56778899999988877433 44443
No 319
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.47 E-value=5.2e-06 Score=96.81 Aligned_cols=175 Identities=14% Similarity=0.195 Sum_probs=130.6
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 733 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s 733 (837)
.++-|+--..+..+|+++.+..+...... ++.-++ .+++++++|...|+|.+-|.++.+.++++..|.+.|..+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv- 225 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV- 225 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec-
Confidence 44466667788899999988888777644 444444 45678999999999999999999999999999999986655
Q ss_pred CCCCEEEEEe----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE---CCC
Q 003236 734 TSGEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWN---MTE 799 (837)
Q Consensus 734 pdg~~Lasgs----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwD---l~s 799 (837)
.|++|++|+ |..|+|||++......++ ..+.++ .-+.|+|.- ..+++++..|...+.| +.+
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI---~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI---QFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhhhccCCc---ccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 588888875 336999999987432222 222222 445677765 4578888899999988 333
Q ss_pred Cc--EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 800 NK--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~~--~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.. ...+......+.++++++++..+|.|..+|.|.+|-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 32 123334455699999999999999999999999993
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=4.7e-06 Score=96.31 Aligned_cols=183 Identities=15% Similarity=0.187 Sum_probs=129.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
.+.|+|++++ +++|+.|+.+|.|++++.... . .+...|... ..+|.+++|||.||+|.|..+.+.+. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 4568888887 679999999999999986543 2 333345444 55899999999999999999887664 33
Q ss_pred EeeccccceEEEEEcCC----CCeEEEEEeCCCcEEEEECC---CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 635 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSIN---NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspd----g~~llasgs~Dg~I~vwDl~---t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
.+. ...++.+++++|+ ....+++|+..| +.++.-+ ....+..-...+.|.++.|..+ +++-..|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEecCCCcE
Confidence 332 4578999999998 233566888777 7666432 2223323334678999999743 66666677799
Q ss_pred EEECCCCeEEEEEcCCCCC------EEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003236 708 ILDVETQVCRLKLQGHKNQ------VHSVCWNTSGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~------V~sl~~spdg~~LasgsDg~I~IwDl~s 754 (837)
|||+.+...+..+...... ...+.|.++. .|+.|-..+|+|..++.
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIKK 234 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEec
Confidence 9999998877776643332 2357777554 56667767799998873
No 321
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.45 E-value=1.9e-07 Score=62.56 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhc
Q 003236 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (837)
Q Consensus 10 ~~l~~yiydyl~k~~~~~~A~~~~~e~ 36 (837)
+.||.+|||||+++||.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.45 E-value=7e-05 Score=87.47 Aligned_cols=258 Identities=11% Similarity=0.090 Sum_probs=150.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCC------CeE--EEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~------~I~--~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
+..+++++.++.|+.+|..+++.+-.+..... .+. .+... ++..++.++.++.|+.+|.++++..-+ +..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~-~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK-FGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee-ecC
Confidence 34566777789999999999988866643322 010 11111 226788888999999999999875332 222
Q ss_pred ccc-----ce-EEEEEcCCCCeEEEEEe---------CCCcEEEEECCCCeeeeEEecCCC-------------------
Q 003236 639 HST-----TV-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKCQSG------------------- 684 (837)
Q Consensus 639 h~~-----~V-~sl~fspdg~~llasgs---------~Dg~I~vwDl~t~~~i~~~~~~~~------------------- 684 (837)
... .+ .+..+. +. +++.++ .++.|..+|..+|+.+..+.....
T Consensus 139 ~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 111 01 112222 13 233332 367899999999999888765211
Q ss_pred --e-eEEEEecCCCEEEEEEcCC------------------eEEEEECCCCeEEEEEcCCCCCE------EEEEEc----
Q 003236 685 --A-TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQGHKNQV------HSVCWN---- 733 (837)
Q Consensus 685 --i-~sl~~sp~g~~llags~dg------------------~I~iwDl~s~~~~~~l~~h~~~V------~sl~~s---- 733 (837)
+ ....+.+.++.+++++.++ .|.-+|.++++.+..+..-.... ....+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 0 1244555667888887664 79999999999988865311111 001111
Q ss_pred CCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 003236 734 TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYET 791 (837)
Q Consensus 734 pdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg------------------s~dg~ 791 (837)
-++. ++++++ +|.+..+|.+++ +.+...... ...++.+| ..++++ ..++.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG---~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTG---KLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCC---cEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 1333 455666 999999999998 444333211 11123333 233332 23578
Q ss_pred EEEEECCCCcEE-EeccC--C------CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 792 LELWNMTENKTL-TLSAH--D------KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 792 I~IwDl~s~~~~-~l~~h--~------~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|.-+|+.+++.+ ..... . .+...-...-.+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 999999999877 22211 0 1111111112457788888899888764
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.42 E-value=0.00022 Score=77.11 Aligned_cols=256 Identities=9% Similarity=0.097 Sum_probs=159.7
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCceeEEeecc--c----
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH--S---- 640 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~~~~~~~~~~~~h--~---- 640 (837)
+.|+|+|.++++.+-.+.. +..-.+..+|+++.+++++. .-.|.+||..+-.......... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998877753 33445678999999887543 4479999999754322211111 1
Q ss_pred cceEEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-CCeEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRL 718 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~-s~~~~~ 718 (837)
.....+.++.+++++++.- +---.|.|.|+..++.+..+..++...-.-+- ...+.+.|.||.+..+.+. .|+...
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC--CCceEEEecCCceEEEEECCCCCEeE
Confidence 2234467788877666432 23457899999999999888875543333222 2568899999999998887 444432
Q ss_pred E----EcCCCCCE-EEEEEcCCCC-EEEEEeCCeEEEEEcCCCCCceeEEEeecC----------CCceEEEEEeCCCCE
Q 003236 719 K----LQGHKNQV-HSVCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPS 782 (837)
Q Consensus 719 ~----l~~h~~~V-~sl~~spdg~-~LasgsDg~I~IwDl~s~~~~~~i~~~~~~----------~~~I~sv~fspdg~~ 782 (837)
+ |.....++ ..-++...+. +++..-+|.|+-.|+..... ......... .+...-+++++....
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-cccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 2 11122222 2334554444 44444499999999876532 222222211 122344788887766
Q ss_pred EEEEEcC--------C--eEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003236 783 LLVIGCY--------E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~d--------g--~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWd 837 (837)
|++.-.. + .|.+||+.+++.+....-..++.+|.++.+.+ +|++.+ .++.|.|||
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 7664321 1 68899999999985555456788999999876 665554 578999986
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.40 E-value=5e-06 Score=96.93 Aligned_cols=181 Identities=17% Similarity=0.271 Sum_probs=142.3
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEE
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s 645 (837)
++..++.|+.-..+..+|+.+.+..+........|+-++. +++++++|...|+|.+-|..+.+ .++++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCc-eeeeeeccccceee
Confidence 3456778888888999999998888777655555666554 67899999999999999999865 58999999999999
Q ss_pred EEEcCCCCeEEEEEeC---------CCcEEEEECCCCeeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEEC---C
Q 003236 646 LDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDV---E 712 (837)
Q Consensus 646 l~fspdg~~llasgs~---------Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl---~ 712 (837)
++.. ++++++|+. |..|+|||++..+.+..+..+....-+.|+|.- ..+++++..|.+.+.|. .
T Consensus 223 fDv~---GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ---GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc---CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 8887 336667764 557899999998888777776677778888853 45778888899999993 3
Q ss_pred CC-eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003236 713 TQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 752 (837)
Q Consensus 713 s~-~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 752 (837)
+. ..+..+......+..+++++++..++.+. +|.|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 33 22333444455699999999999999999 999999973
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.40 E-value=6.9e-07 Score=93.93 Aligned_cols=160 Identities=13% Similarity=0.187 Sum_probs=120.8
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----eEEEEEcCCCCCEEEEE
Q 003236 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVC 731 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-----~~~~~l~~h~~~V~sl~ 731 (837)
++.+.+-.|.+-|++++..-. |...+.|.++.|...++.++.|+..|.|..+|++.+ .+...+. |.+.|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeecccccc-cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhh
Confidence 455567788899998775433 335678889999998899999999999999999864 4444554 899999998
Q ss_pred EcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEE--EEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc
Q 003236 732 WNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS--CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA 807 (837)
Q Consensus 732 ~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~s--v~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~ 807 (837)
.-. ++.+|.+.+ +|+|++||++.-+..+.+..+++|.+.-.- +.+.+....|++++.|-..+||.++++.++....
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 766 667777666 999999999977444458888888665433 3456777889999999999999999999884332
Q ss_pred -----CCCCeeEEEEe
Q 003236 808 -----HDKLVSSLAAS 818 (837)
Q Consensus 808 -----h~~~V~sla~s 818 (837)
.+..+.+++|.
T Consensus 386 f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 386 FPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCccccccccceehh
Confidence 23345566654
No 326
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.4e-06 Score=94.30 Aligned_cols=207 Identities=15% Similarity=0.153 Sum_probs=148.9
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--CCceeEEeeccccceEEEEEcCCCCeEEEEEeC-CCcEEEEECC
Q 003236 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSIN 671 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~--~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~ 671 (837)
-|.+.|+.+.-. ..+++++++.||.++.|.-.. +...+..+..|...|.+++.+-++ .++++.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence 377777776554 457999999999999997654 223345667788999999999885 47778666 9999999999
Q ss_pred CCeeeeEEecCCCeeEEEEecCCC----EEEEEE-cCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 672 NGSCAGVFKCQSGATQMRFQPRLG----RILAAA-IENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 672 t~~~i~~~~~~~~i~sl~~sp~g~----~llags-~dg~I~iwDl~s~~--~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
+-..+..++...-...++|....+ .+++.. .++.|.++|-.... ....-.-|..+|.++.+++.+..+++..
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 877665555433222333322212 233333 46899999987653 2333344999999999999999998888
Q ss_pred CCeEEEEEcCC-CCC-----------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 744 DELVRVWSIGS-GSK-----------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 744 Dg~I~IwDl~s-~~~-----------~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
.|.|..|.... -.. ...+..+........++.|+|++..+.+.+.|..|++++.++++++
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 89999998873 100 0112233344567789999999999999999999999999998754
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.00037 Score=81.42 Aligned_cols=228 Identities=14% Similarity=0.102 Sum_probs=133.5
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCC--eEEEEEcC--CCCEEEEEe---------CCCeEEEEEcCCCCceeE
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--ITDVRFSP--SLSRLATSS---------ADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~--I~~l~fsp--dg~~Latgs---------~Dg~I~IWDl~~~~~~~~ 634 (837)
..++.++.++.|+.+|.++++.+..+...... -..+.-+| .+..++.++ .++.|..+|..+++..-+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57778888999999999999999776543221 00111111 124455554 368899999998875333
Q ss_pred Eeecccc-------------------ce-EEEEEcCCCCeEEEEEeCCC------------------cEEEEECCCCeee
Q 003236 635 TFTGHST-------------------TV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGSCA 676 (837)
Q Consensus 635 ~~~~h~~-------------------~V-~sl~fspdg~~llasgs~Dg------------------~I~vwDl~t~~~i 676 (837)
....... .| ...++.+.+. +++.++.++ .|..+|+++|+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 2221110 11 1233444444 344454443 7999999999999
Q ss_pred eEEecCCC-e------eEEEEe----cCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 677 GVFKCQSG-A------TQMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 677 ~~~~~~~~-i------~sl~~s----p~g~---~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
..+..... . ....+. -++. .+++++.+|.+..+|.++++.+...... ...++.+| +..++..
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~ 345 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGA 345 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEcc
Confidence 88764211 1 111111 1232 5777888999999999999988765421 11123333 2222211
Q ss_pred ------------------eCCeEEEEEcCCCCCceeEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 743 ------------------SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 743 ------------------sDg~I~IwDl~s~~~~~~i~~~~~~~--------~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
.+|.|..+|+.++ +.+-...... .........-.+..|++++.|+.|+.+|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence 1567888888877 3343333220 1111111122456789999999999999
Q ss_pred CCCCcEE
Q 003236 797 MTENKTL 803 (837)
Q Consensus 797 l~s~~~~ 803 (837)
.++|+.+
T Consensus 423 ~~tG~~l 429 (488)
T cd00216 423 ATTGKEL 429 (488)
T ss_pred CCCCcee
Confidence 9999988
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=7.8e-05 Score=87.07 Aligned_cols=205 Identities=15% Similarity=0.252 Sum_probs=139.1
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCC-----
Q 003236 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG----- 673 (837)
Q Consensus 604 ~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~vwDl~t~----- 673 (837)
+|++.+..++.|+.+|.|.+++-. -..+..+..+...|...-|.-++..++++.+.|+ .|+|||++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 366788899999999988877644 2334666666666444444555555666666554 5899998642
Q ss_pred -eee---eEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECC---C-CeEEEEEcCCCCCEEEEEEcCCCCE-E
Q 003236 674 -SCA---GVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVE---T-QVCRLKLQGHKNQVHSVCWNTSGEY-L 739 (837)
Q Consensus 674 -~~i---~~~~~-----~~~i~sl~~sp~g~~llags~dg~I~iwDl~---s-~~~~~~l~~h~~~V~sl~~spdg~~-L 739 (837)
.++ +.+.. ..++.+++++.+-..+++|-.+|.|..+.-+ . +...........+|+.+++..++.. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 233 22221 3467889999998999999999999998532 1 2222222235679999999988887 5
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE-EEec-cCCCCee
Q 003236 740 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLS-AHDKLVS 813 (837)
Q Consensus 740 asgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~-~~l~-~h~~~V~ 813 (837)
+++....|.+|.+.... .....+..++..+.|..+++....+++++. ..|++||...... ..+. +|.....
T Consensus 188 Fv~Tt~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEecCCC--cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEE
Confidence 55557789999998432 345557788899999999887764555544 4699999876543 3555 5555443
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.32 E-value=0.00061 Score=77.46 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=70.8
Q ss_pred eEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEE
Q 003236 746 LVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV 824 (837)
Q Consensus 746 ~I~IwDl~s~~~~~~i~~-~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~L 824 (837)
...+|++...+. .++.. .-.....+.+++++|+...++.|+.||.|.+||...+... ...+.-.++.++|+|+|.++
T Consensus 237 d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~ 314 (545)
T PF11768_consen 237 DSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIF 314 (545)
T ss_pred EEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEE
Confidence 356677764432 33322 2345778999999999999999999999999998777444 33455678999999999999
Q ss_pred EEEECCCcEEEeC
Q 003236 825 ASASHDKCVKIWK 837 (837)
Q Consensus 825 aSgs~DG~I~IWd 837 (837)
++|+.-|.|.+||
T Consensus 315 ~V~s~qGelQ~FD 327 (545)
T PF11768_consen 315 VVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCceEEEEE
Confidence 9999999999998
No 330
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.32 E-value=7.5e-05 Score=85.67 Aligned_cols=271 Identities=12% Similarity=0.130 Sum_probs=151.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
...|.--+++..+++++.|+.-|.|++|+-..+.... ...+..+.+..+..+++..++|.|+..|.|.|+-+......-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3345445566678899999999999999966544332 222345566677788888889999999999999887633211
Q ss_pred E-----EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-----eeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 003236 634 R-----TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 634 ~-----~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-----~~i~~~~~~~~i~sl~~sp~g~~llags~d 703 (837)
. .-..|...|++++|++++..++ +|+..|.|.+-.+... .....+...+.|..+.+.. .++++++.-
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~ 189 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLT 189 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhh
Confidence 1 1223778999999999987554 9999999998888762 1222333456666666543 344444433
Q ss_pred CeEEEEECCCCeEEEEEcC-CCC-CEEEEEEcCC----CCEEEEEeCCeEEEEEcCCCCCceeEEE--ee----------
Q 003236 704 NYISILDVETQVCRLKLQG-HKN-QVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHE--LS---------- 765 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~-h~~-~V~sl~~spd----g~~LasgsDg~I~IwDl~s~~~~~~i~~--~~---------- 765 (837)
.. .+++++..+....-+. .++ .-...||-|. ..-.+.|.--..|+|..+-.. ..+.+ ++
T Consensus 190 r~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G--~V~~Thqfk~ala~~p~p~ 266 (726)
T KOG3621|consen 190 RC-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAG--EVIKTHQFKDALARPPAPE 266 (726)
T ss_pred hh-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecce--eEEEeeehhhhhccCCCCc
Confidence 32 2344443221111111 111 1234455443 233333442236777654321 11111 11
Q ss_pred ----c-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 766 ----C-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 766 ----~-------------~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
. +.-....+.+-.+ ..+++-+.-| |+|+|..+...+........|..++.+ ++-|+.-.
T Consensus 267 i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~-~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL~ 342 (726)
T KOG3621|consen 267 IPIRSLESPNQRSLPSGTQHLSLSKSSTLHS-DRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVLN 342 (726)
T ss_pred ccCCCcCCccccCCCCCccccccceeEEeec-ceEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEEe
Confidence 0 0001111112122 2344444444 889998888777666555566666544 44455555
Q ss_pred CCCcEEE
Q 003236 829 HDKCVKI 835 (837)
Q Consensus 829 ~DG~I~I 835 (837)
.||.+++
T Consensus 343 ~d~~l~~ 349 (726)
T KOG3621|consen 343 LDRGLKV 349 (726)
T ss_pred cCCceeE
Confidence 5665543
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00017 Score=84.42 Aligned_cols=195 Identities=13% Similarity=0.166 Sum_probs=137.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC-eEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCC
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENPD 630 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-I~~l~fspdg~~Latgs~Dg-----~I~IWDl~~~~ 630 (837)
.|+| |++.+..+|.|+.+|.|.+.+ ...+.+..+..+... |..+....+..+|++.+.|+ .|+|||++..+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4554 577788999999999999987 445666777777777 55554444447888877765 58999987431
Q ss_pred -----cee---EEee----ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC--C--C-eeeeEEecCCCeeEEEEecC
Q 003236 631 -----YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N--G-SCAGVFKCQSGATQMRFQPR 693 (837)
Q Consensus 631 -----~~~---~~~~----~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~--t--~-~~i~~~~~~~~i~sl~~sp~ 693 (837)
.++ +.+. ....++.+++.+.+ -..+|.|-.+|.|.++.-. . + +.........+|+.+.+..+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 122 2221 13467888999887 4467788889999888421 1 1 22223334678999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 694 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~~~-~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
+..++.+.....|.+|.+....+ ...+..|...+.|..+++...-++++.+..|.+||....
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR 245 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence 88866666678899999885443 444677888999999987666577777888999998744
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.30 E-value=0.00051 Score=70.38 Aligned_cols=143 Identities=12% Similarity=0.035 Sum_probs=100.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEE-
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS- 645 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s- 645 (837)
..+++.|++.+.+...|..+++.+..-. -...|.+-+.- -|.+++.|+..|.+++.++.++.. ...+... +.|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~-~~vk~~ 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVIL-ETVKVR 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-eeeeeeh-hhhccc
Confidence 4578889999999999999988875432 22344443332 467899999999999999999865 3333222 22222
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-EEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003236 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENYISILDVETQ 714 (837)
Q Consensus 646 l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-sl~~sp~g~~llags~dg~I~iwDl~s~ 714 (837)
....+++ .+++.++.|+..+..|.++..++...+..+.+. +-++.+-...|+++...|.|.-...+..
T Consensus 99 a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 99 AQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 2334454 478899999999999999999999988766643 4556665567777777777766665544
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.28 E-value=7.4e-05 Score=84.99 Aligned_cols=204 Identities=15% Similarity=0.117 Sum_probs=131.3
Q ss_pred EEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---C-CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 579 I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---D-g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
+.+-|.+ +.....+..-...+..-+|+|++..++..+. . ..++++|+.++..... ....+.-....|+|||..
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~~~g~~~~P~fspDG~~ 251 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--LNFNGNNGAPAFSPDGSK 251 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--eccCCccCCccCCCCCCE
Confidence 3444443 4555555555667888899999887665532 2 4699999998764222 113344456789999999
Q ss_pred EEEEEeCCCc--EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEEE
Q 003236 655 LLCSCDNNSE--IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHS 729 (837)
Q Consensus 655 llasgs~Dg~--I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-g--~I~iwDl~s~~~~~~l~~h~~~V~s 729 (837)
++++...||. |+++|+..+...+.....+.-..-.|+|+|++|+..+.. | .|.++|++...... +......-.+
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~ 330 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSN 330 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcC
Confidence 9999888875 666688776644422223334467899999999888764 3 57888888765432 2222222237
Q ss_pred EEEcCCCCEEEEEe--CCe--EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 730 VCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 730 l~~spdg~~Lasgs--Dg~--I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
-.|+|||++|+..+ +|. |.+.|+.++.. +..+ ........-.|.+++..|+..+..+
T Consensus 331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred ccCCCCCCEEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 78999999999888 564 77777766632 2222 2233344557888888777665544
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.25 E-value=0.00011 Score=82.78 Aligned_cols=260 Identities=13% Similarity=0.080 Sum_probs=139.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--------
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-------- 628 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~-------- 628 (837)
.|+++.|+++..-|++|...|.|.||.....+... ......-....|.+- - ..++.-.|-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~----~--~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF----S--LNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc----c--ccCCCcceEEehhhCCccccc
Confidence 48999999998899999999999999765432221 000011111111110 0 0011112223221
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC---------CCeeEEEEec-----CC
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---------SGATQMRFQP-----RL 694 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~---------~~i~sl~~sp-----~g 694 (837)
+-.+...+....++|++++.+.-| +++.|..+|.+.|.|++....+..-... ..++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 112334445557899999998554 8889999999999999988877764432 2467777763 22
Q ss_pred ---CEEEEEEcCCeEEEEECC--C-Ce----EEEEEcCCCCCEEEEE-EcCC---------------------CCEEEEE
Q 003236 695 ---GRILAAAIENYISILDVE--T-QV----CRLKLQGHKNQVHSVC-WNTS---------------------GEYLASV 742 (837)
Q Consensus 695 ---~~llags~dg~I~iwDl~--s-~~----~~~~l~~h~~~V~sl~-~spd---------------------g~~Lasg 742 (837)
-.+++|+..|.+.+|.+. . +. .......+.++|..|. |+.+ .-+++++
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 357888999999999764 1 21 1122224667776665 3221 1267777
Q ss_pred eCCeEEEEEcCCCCCceeEEEeecCCCceEEEEE-----eCCCCEEEEEEcCCeEEEEECCCCcEE-Eecc----CCCCe
Q 003236 743 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF-----HPTFPSLLVIGCYETLELWNMTENKTL-TLSA----HDKLV 812 (837)
Q Consensus 743 sDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f-----spdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~----h~~~V 812 (837)
++..++|+...+. +..+...........+++ ...+..|++...+|.|++|.+..-+.+ .... ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 8999999998876 444443322223334445 235677888899999999999998877 2222 12345
Q ss_pred eEEEEeCCCCEEEEEEC
Q 003236 813 SSLAASTVNGMVASASH 829 (837)
Q Consensus 813 ~sla~spdg~~LaSgs~ 829 (837)
...+++++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 56777888887766654
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.24 E-value=3.8e-06 Score=61.63 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.0
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
+.+.++.+|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=1.8e-05 Score=91.28 Aligned_cols=262 Identities=15% Similarity=0.125 Sum_probs=150.6
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CceeEEe
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTF 636 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~-~~~~~~~ 636 (837)
++++||+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..++|+..-|.|.+|..+-. ......+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 567999999888999999999999998887777777889999999999999999999999999999988732 2111222
Q ss_pred eccc--c--ceEEEEEcCCCCe------EEEEEeCCCcEE-EEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 003236 637 TGHS--T--TVMSLDFHPSKED------LLCSCDNNSEIR-YWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 637 ~~h~--~--~V~sl~fspdg~~------llasgs~Dg~I~-vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~ 705 (837)
..|. . ...|...++++.. ..++|+ +..+- .++.+.....+.... . -.|+|..+++++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD-e~alD~~fnwk~~~a~rs~~k-s------gv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD-ESALDEPFNWKESLAERSDEK-S------GVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCc-hhhhcccccCccchhhccccc-c------CCCCCcEEEEEcCCce
Confidence 2232 2 2344445555432 223443 33222 333332111111111 1 1467778888999999
Q ss_pred EEEEECCCC-eEEEEEc--------CCCCCEEEEEEcCCCCEEEEEeCC------eEEEEEcCCCCC-c--------eeE
Q 003236 706 ISILDVETQ-VCRLKLQ--------GHKNQVHSVCWNTSGEYLASVSDE------LVRVWSIGSGSK-G--------ECI 761 (837)
Q Consensus 706 I~iwDl~s~-~~~~~l~--------~h~~~V~sl~~spdg~~LasgsDg------~I~IwDl~s~~~-~--------~~i 761 (837)
|+..|-... ..+.... +....|.++.-.-...++..-..| .+++- .+.+.. + -.+
T Consensus 214 Vyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~s-gk~GgrqGgiA~sEssGvL 292 (1416)
T KOG3617|consen 214 VYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVS-GKLGGRQGGIACSESSGVL 292 (1416)
T ss_pred EEEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhc-cccCCccCccccccccccc
Confidence 988885432 2222211 111222222111111111111111 01110 000100 0 000
Q ss_pred E---Ee-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------EEEe---ccCCCCeeEEEEeCCCCEEEE
Q 003236 762 H---EL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TLTL---SAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 762 ~---~~-~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--------~~~l---~~h~~~V~sla~spdg~~LaS 826 (837)
. .+ -..+..+.++++...+..++.|...|.+.+|--.... ...+ ....+.|+.+.|.|-...++.
T Consensus 293 r~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 293 RKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred cCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhh
Confidence 0 00 1135678999999999999999999999999532221 1122 234567999999986555444
Q ss_pred EE
Q 003236 827 AS 828 (837)
Q Consensus 827 gs 828 (837)
-+
T Consensus 373 n~ 374 (1416)
T KOG3617|consen 373 NT 374 (1416)
T ss_pred hh
Confidence 33
No 337
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=4e-06 Score=88.35 Aligned_cols=158 Identities=14% Similarity=0.199 Sum_probs=116.5
Q ss_pred EEEcC--CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----CceeE
Q 003236 561 CHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSLR 634 (837)
Q Consensus 561 l~fSp--dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~----~~~~~ 634 (837)
++|+- .|-. ++.+.+-.|-+-|++++-.. .|. .++.|.++.|.-.+.+++.|+..|.|.++|++.. ..+..
T Consensus 217 CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 217 CAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred hhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 35553 2333 44555677889998886443 332 5677999999988999999999999999999875 33333
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eeEEecCCC---eeEEEEecCCCEEEEEEcCCeEEE
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKCQSG---ATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~---i~~~~~~~~---i~sl~~sp~g~~llags~dg~I~i 708 (837)
.+ -|...|+++.........+.+.+-+|+|++||++.-++ +..+..+.. -.-+.+.+..+.+++++.|...+|
T Consensus 294 rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRI 372 (425)
T ss_pred EE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEE
Confidence 33 48899999887763345666778899999999998777 666653221 223445667788999999999999
Q ss_pred EECCCCeEEEEEcC
Q 003236 709 LDVETQVCRLKLQG 722 (837)
Q Consensus 709 wDl~s~~~~~~l~~ 722 (837)
|.++.+..+.++..
T Consensus 373 Wsl~~ghLl~tipf 386 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPF 386 (425)
T ss_pred EecccCceeeccCC
Confidence 99999988887764
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.22 E-value=0.00019 Score=86.75 Aligned_cols=231 Identities=15% Similarity=0.195 Sum_probs=136.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 675 (837)
..+.|.++.|.-+...++.+..+|.|.+-|..+.. ......-...|.+++|+||...++ ..+.+.+|.+- ..+..+
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~m-T~~f~~ 142 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLA-LITGRQTLLFM-TKDFEP 142 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEE-eccccc
Confidence 34689999999999999999999999999888754 344444567899999999987544 44445555443 222222
Q ss_pred eeEEec------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-----C
Q 003236 676 AGVFKC------QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----D 744 (837)
Q Consensus 676 i~~~~~------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-----D 744 (837)
+..... .+....+-|-.....+ -| ..|.....+............-.+.=++|+|--||.++++.. +
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQF-RG-SEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hhccccccccccccccceecccccceee-ec-chhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 222111 1112222222211100 00 011111111111000000001122335689999999999843 4
Q ss_pred -CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEECCCCc---EE-EeccCCCCeeEEE
Q 003236 745 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENK---TL-TLSAHDKLVSSLA 816 (837)
Q Consensus 745 -g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~---dg~I~IwDl~s~~---~~-~l~~h~~~V~sla 816 (837)
..|+|||-. + ..-..-....+.-.+++|-|.|..+++... ++.|.+|.-+.-+ .. .+......|..++
T Consensus 221 ~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 221 TRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred ceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheee
Confidence 689999976 3 111122223344578899999998888754 4479999865433 22 3334445599999
Q ss_pred EeCCCCEEEE---EECCCcEEEe
Q 003236 817 ASTVNGMVAS---ASHDKCVKIW 836 (837)
Q Consensus 817 ~spdg~~LaS---gs~DG~I~IW 836 (837)
|+.++.+||+ +.....|++|
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred ecCCCCceeeeecccccceEEEE
Confidence 9999999987 4444559998
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=1.9e-05 Score=91.07 Aligned_cols=261 Identities=10% Similarity=0.072 Sum_probs=150.8
Q ss_pred EEEEEcCCCCEEEEEE----CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 559 ESCHFSPDGKLLATGG----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs----~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
+-..|+|...+||+++ ..|.|.||- ++|++-..+. ..-.++++||+|..-.|+.|-.-|.+.+|...+.+. ..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence 3467999999999886 358898884 5565443332 223367799999988899999999999999987553 55
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-----ecCCCe--eEEEEecCCC------EEEEEE
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-----KCQSGA--TQMRFQPRLG------RILAAA 701 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-----~~~~~i--~sl~~sp~g~------~llags 701 (837)
....|..+|..+.|+++|. .++++..-|.|.+|....-..+... .....+ .|...++++. ..++.+
T Consensus 96 v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg 174 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG 174 (1416)
T ss_pred eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence 5667999999999999987 4559999999999987632222211 112233 3444455532 233333
Q ss_pred cCCeEE-EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003236 702 IENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 702 ~dg~I~-iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd 779 (837)
.++.+- .++.+......... |. =.|+|..++.+. +|+|+-.|-.. .+....+.... ..+-|.+.
T Consensus 175 De~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~GtVyyvdq~g----~~~~V~k~dS~--vQmLf~~~ 240 (1416)
T KOG3617|consen 175 DESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGTVYYVDQNG----RQRTVHKLDSE--VQMLFMGY 240 (1416)
T ss_pred chhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCceEEEEcCCC----cEEEEEEccch--HHHHHhcc
Confidence 333332 33333211111111 11 125666555555 88887777432 22222221111 11222232
Q ss_pred CCEEEEEEcCCeEEEEEC-CCCc---------------------------EE----E-eccCCCCeeEEEEeCCCCEEEE
Q 003236 780 FPSLLVIGCYETLELWNM-TENK---------------------------TL----T-LSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl-~s~~---------------------------~~----~-l~~h~~~V~sla~spdg~~LaS 826 (837)
...|++...+-++.+|-+ .+|. ++ . -......++|++++..+..|+.
T Consensus 241 ~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a 320 (1416)
T KOG3617|consen 241 CEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA 320 (1416)
T ss_pred cceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEe
Confidence 222222222222222211 1110 00 0 0123457999999999999999
Q ss_pred EECCCcEEEeC
Q 003236 827 ASHDKCVKIWK 837 (837)
Q Consensus 827 gs~DG~I~IWd 837 (837)
|...|.+.+|.
T Consensus 321 gt~~gnv~~w~ 331 (1416)
T KOG3617|consen 321 GTKEGNVTIWL 331 (1416)
T ss_pred cccCCcEEEee
Confidence 99999999994
No 340
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.19 E-value=4.9e-06 Score=61.03 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=36.9
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
++++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00053 Score=77.51 Aligned_cols=220 Identities=13% Similarity=0.108 Sum_probs=155.3
Q ss_pred eEEEEEcCCCCE-EEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCcee
Q 003236 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL 633 (837)
Q Consensus 558 V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~~~~~~~ 633 (837)
-.++++++++.. +++...++.|.+.|..+.+....+..-. ....++|+++++.++++.. ++++.+.|..+.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 346788888874 4555556899999988877776664332 6778999999988877766 6889999988876544
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee-----EEecCCCeeEEEEecCCCEEEEEEcC---Ce
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKCQSGATQMRFQPRLGRILAAAIE---NY 705 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-----~~~~~~~i~sl~~sp~g~~llags~d---g~ 705 (837)
. ...-..+ ..+++.|++..++++-..++.|.+.|........ ..........+.+.+++.++++.... +.
T Consensus 155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 4 3332234 8999999999888777789999999987766653 23334556789999999987777665 59
Q ss_pred EEEEECCCCeEEEEEcCCCC-CEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 706 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~-~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
+...|..++........-.. ....+.++|+|.++.+.. .+.+.+.|..+......+.........+..+++.+..
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 99999998877665222222 566789999999998886 5789999988763222222222223345555655544
No 342
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.17 E-value=0.00015 Score=84.22 Aligned_cols=215 Identities=11% Similarity=0.059 Sum_probs=133.2
Q ss_pred EcCCCCEEEEE-ECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEEcCCCCceeEEee
Q 003236 563 FSPDGKLLATG-GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 563 fSpdg~~Lasg-s~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg----~I~IWDl~~~~~~~~~~~ 637 (837)
+++||+.+... -..+.+.+.|.++.+....+..- +....+.++++++++++.+.+. ++..-+..+... +..+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~-~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW-VVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCce-EEEEc
Confidence 34566544322 23456777788887777666432 2456788999999998886432 333333322111 11111
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-----CeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEEC
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDV 711 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-----~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl 711 (837)
- ..+ -.+.++|+..++ .++.|.++|.++ .+.+..+........+.++|||+++++++. ++.|.|+|+
T Consensus 278 i--~~i--ea~vkdGK~~~V---~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 278 I--ARI--EEAVKAGKFKTI---GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred h--HHH--HHhhhCCCEEEE---CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 0 000 123456665554 267899999998 567788888889999999999999888776 789999999
Q ss_pred CCCeE------------EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC------CCC-ceeEEEeecCCCce
Q 003236 712 ETQVC------------RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------GSK-GECIHELSCTGNKF 771 (837)
Q Consensus 712 ~s~~~------------~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s------~~~-~~~i~~~~~~~~~I 771 (837)
.+.+. +.+..- .......+|+++|..+.+.. |..|..|++.. +.. ...+..+..|..+.
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg 429 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG 429 (635)
T ss_pred hhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence 87542 333332 22334578999998777777 99999999875 111 13444444443332
Q ss_pred EEEE-----EeCCCCEEEEEE
Q 003236 772 HSCV-----FHPTFPSLLVIG 787 (837)
Q Consensus 772 ~sv~-----fspdg~~L~sgs 787 (837)
...+ -.++|++|++..
T Consensus 430 h~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 430 HNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eeeecCCCcCCCCCCEEEEcc
Confidence 2222 356677666654
No 343
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.15 E-value=9.2e-05 Score=84.25 Aligned_cols=189 Identities=12% Similarity=0.197 Sum_probs=126.7
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCC---CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CC--eE
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-EN--YI 706 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~D---g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg--~I 706 (837)
...+......+..-+|+|++..+.+..-.. ..++++|+.+++........+.-....|+|||+.|+.+.. |+ .|
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i 264 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI 264 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence 344444456677888999988766554333 3599999999988888877777788899999998877664 44 67
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+++|+..+.... +....+.-+.-.|+|||++|+..+ .| .|.++++..... ..+......-..-.|+|||++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence 888888776333 443344444678999999999888 34 577777766532 222222333337789999999
Q ss_pred EEEEEcC-C--eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEE
Q 003236 783 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 783 L~sgs~d-g--~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaS 826 (837)
|+..+.. | .|.++|+.++..+....+.......+|.++++.|+.
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEE
Confidence 9988854 3 477788776664444344444444555566554443
No 344
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.13 E-value=0.00032 Score=71.85 Aligned_cols=150 Identities=11% Similarity=-0.027 Sum_probs=117.8
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ 726 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~ 726 (837)
...++.+.+++.|+..+.+...|..+|+.+........+.+-+.. -+++++.|+..|.+++.+.+++.....+...+.-
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 344555778889999999999999999998887777777766555 4678999999999999999999877776643332
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 727 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
-......+++.++..++ |+..+..|.++. .++...+..+....+-++.|....|+++...|.|.-...+..
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 23345678899999999 999999999887 788888888887888888885566777777776665565555
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.12 E-value=0.00049 Score=78.66 Aligned_cols=221 Identities=12% Similarity=0.147 Sum_probs=120.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE-EcCCCCc
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDY 631 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW-Dl~~~~~ 631 (837)
...-....+.++|+|++++++ .||...||.....+.... +.-...+|...+ .+|+-...++|.|+ ++....
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~- 101 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV- 101 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T-
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc-
Confidence 344457889999999999985 478888988655554432 334577888854 56777678899996 343222
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl 711 (837)
...+.. ...+..|-. |. +|+..+ ++.|.+||+.+++.++.+.... |..+.|++++.+++..+.+ .+.|++.
T Consensus 102 -~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 102 -VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred -ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 112221 112333332 55 443444 4589999999999999998653 8999999999888888754 5666554
Q ss_pred CCC-----------eEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 712 ETQ-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 712 ~s~-----------~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
+.. .....+......|.+.+|..+ -+|++... .|+. +..+ ....+..-..++.-+.+.+..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~G----e~~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNG----ETGIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETT----EEEEEEE-SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcC----CcceEEEcCCceEEEEEEccC
Confidence 332 012222222567899999876 34443335 7776 3333 222333335677778888877
Q ss_pred CEEEEEEcCCeEEEEECC
Q 003236 781 PSLLVIGCYETLELWNMT 798 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl~ 798 (837)
..+++...++.|..+.+.
T Consensus 245 ~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-TT--EEEEE--
T ss_pred CEEEEEECCCCEEEEEEC
Confidence 788888888888877664
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.12 E-value=0.002 Score=69.24 Aligned_cols=225 Identities=14% Similarity=0.139 Sum_probs=131.9
Q ss_pred CCCCEEEEEECCCcEEEEeCC-CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE--------
Q 003236 565 PDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-------- 635 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~-------- 635 (837)
..++.|+.|+.+| |+++++. ..+..... +...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577999999988 9999983 33333333 233499999999877766664 599999998753321110
Q ss_pred -----eeccccceEEEE--EcCCCCeEEEEEeCCCcEEEEECCCC-----eeeeEEecCCCeeEEEEecCCCEEEEEEcC
Q 003236 636 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFKCQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 636 -----~~~h~~~V~sl~--fspdg~~llasgs~Dg~I~vwDl~t~-----~~i~~~~~~~~i~sl~~sp~g~~llags~d 703 (837)
.......+..++ -...+...++.+. ...|.+|..... +..+.+.....+..++|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111223444444 1233344444443 558888877542 566777888999999999 45566665 4
Q ss_pred CeEEEEECCCCeEEEEEcCC------------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce
Q 003236 704 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 771 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h------------~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I 771 (837)
+...++|+.++.....+... ..++..+.. +++++|++ .|..-.+.|.... ... ...+. -....
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~G~-~~r-~~~i~-W~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKNGE-PSR-KSTIQ-WSSAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCCCC-cCc-ccEEE-cCCch
Confidence 55888899876554333211 123333333 34566654 4443444444332 111 11111 12344
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEe
Q 003236 772 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL 805 (837)
Q Consensus 772 ~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l 805 (837)
..+++. .++|++.+. +.|.||++.+++++..
T Consensus 232 ~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 232 QSVAYS--SPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred hEEEEE--CCEEEEECC-CEEEEEECcCCcEEEE
Confidence 555553 346777666 4599999999988743
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.10 E-value=0.0027 Score=74.71 Aligned_cols=186 Identities=10% Similarity=0.027 Sum_probs=114.9
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCC-CCeE---E-------EEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~I~---~-------l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.++.|+-+|..+++.+-.+.... ..+. + +++ .+..|+.++.|+.|..+|..+++.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4467777778899999999999887664211 1111 1 122 2346778889999999999998864332
Q ss_pred eec-cc--cceEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeeEEecCCC----------------------
Q 003236 636 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSG---------------------- 684 (837)
Q Consensus 636 ~~~-h~--~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~~---------------------- 684 (837)
-.. +. ..+.+ -.+. + ..+++..+ .+|.|..+|.++|+.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 211 11 11111 1111 2 33443322 268999999999998876653110
Q ss_pred -----------eeEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcCCCCCE---------E
Q 003236 685 -----------ATQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHKNQV---------H 728 (837)
Q Consensus 685 -----------i~sl~~sp~g~~llags~d----------------g~I~iwDl~s~~~~~~l~~h~~~V---------~ 728 (837)
-..+.+.+..+.++.+... ..|.-.|+++++.+..+......+ .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 1134667767777776622 168888999999988876522211 1
Q ss_pred EEEEcCCCC---EEEEEe-CCeEEEEEcCCCC
Q 003236 729 SVCWNTSGE---YLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 729 sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~ 756 (837)
-+.+..+|+ .++.+. +|.+++.|.++++
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 222334665 666666 9999999999884
No 348
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.08 E-value=0.001 Score=70.10 Aligned_cols=199 Identities=12% Similarity=0.170 Sum_probs=115.6
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
.+.+-...+..|+|+|+.+.++++....+.|..++.. |+.++.+... +....|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445556799999999989999999999999999975 8888887763 457889998776555544457899999884
Q ss_pred CC------eEEEEEc-----CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCC--CCCceeEEEe------ecCCCceE
Q 003236 713 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHEL------SCTGNKFH 772 (837)
Q Consensus 713 s~------~~~~~l~-----~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s--~~~~~~i~~~------~~~~~~I~ 772 (837)
.. .....+. .+...+..++|++.+..|+++. ..-..||.+.. ......+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 31 1111221 2445689999999877777776 55566666654 1111111111 11335678
Q ss_pred EEEEeCCCCEEEEEEcC-CeEEEEECCCCcEE---Eecc--C-----CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 773 SCVFHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA--H-----DKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 773 sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~---~l~~--h-----~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.++++|....|++-+.. ..|.++| .+|+++ .+.. | -...-.|+|.++|.+.++ ++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 99999987776666654 4888899 566655 2222 1 124678999999865554 466666655
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.07 E-value=0.0024 Score=71.51 Aligned_cols=229 Identities=17% Similarity=0.193 Sum_probs=134.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccC-----------------CCCeEEEEEcCCCCEEEEEeC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-----------------TQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-----------------~~~I~~l~fspdg~~Latgs~ 617 (837)
...+....|||||+.+|... ++.|++++..++......... -+.-..+.|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 56788999999999999886 688999998877544322111 122356889999999887643
Q ss_pred CC------------------------------------eEEEEEcCCCCce-eEEe---eccccceEEEEEcCCCCeEEE
Q 003236 618 DR------------------------------------TVRVWDTENPDYS-LRTF---TGHSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 618 Dg------------------------------------~I~IWDl~~~~~~-~~~~---~~h~~~V~sl~fspdg~~lla 657 (837)
|. .+.|+|+.+++.. +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 21 1334555544321 1111 123456788899988773443
Q ss_pred E-EeCC---CcEEEEECCCCeeeeEEec--CCC---eeEEEEe-cCCCEEEEEE-cCC--eEEEEECCCCeEEEEEcCCC
Q 003236 658 S-CDNN---SEIRYWSINNGSCAGVFKC--QSG---ATQMRFQ-PRLGRILAAA-IEN--YISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 658 s-gs~D---g~I~vwDl~t~~~i~~~~~--~~~---i~sl~~s-p~g~~llags-~dg--~I~iwDl~s~~~~~~l~~h~ 724 (837)
. ...+ ..+.++|..++.+...+.. ..- .....+. +++..++..+ .+| .|.+++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 3 3333 2567778877665544432 222 2355555 6666655444 455 5777787777644 555455
Q ss_pred CCEEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 725 NQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 725 ~~V~s-l~~spdg~~Lasgs--Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
-.|+. +.|++++..|+..+ ++ .|+..++..+ ..+..+.+....-..+.|+|++++++....
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 66755 67888877665444 22 4555566512 244455544444479999999998876654
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.07 E-value=0.003 Score=68.59 Aligned_cols=238 Identities=12% Similarity=0.134 Sum_probs=142.6
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccCCC-------CeEEEEEcCCCCEEEEEeC--CCe
Q 003236 560 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSSA--DRT 620 (837)
Q Consensus 560 sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h~~-------~I~~l~fspdg~~Latgs~--Dg~ 620 (837)
.+.++||++.+++++ +.-.|.+||..+......+.-... ....+.++.|++++++... .-.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 467899999888753 345799999999988765532221 2234677888888777654 356
Q ss_pred EEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeEEec-----CCC-eeEEEEecC
Q 003236 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKC-----QSG-ATQMRFQPR 693 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~~-----~~~-i~sl~~sp~ 693 (837)
|.|.|+...+. +..+.- .+ |.-..|.++.-|.+-+.||.+....+. .|+....... ... +..-.+...
T Consensus 120 VtVVDl~~~kv-v~ei~~-PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 120 VTVVDLAAKKV-VGEIDT-PG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp EEEEETTTTEE-EEEEEG-TS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred EEEEECCCCce-eeeecC-CC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence 88888887654 333331 11 222223333335566669999988887 4555432211 111 234455666
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEE--EEEcCC----------CCCEEEEEEcCCCCEEEEEe----C-----C--eEEEE
Q 003236 694 LGRILAAAIENYISILDVETQVCR--LKLQGH----------KNQVHSVCWNTSGEYLASVS----D-----E--LVRVW 750 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~~~~--~~l~~h----------~~~V~sl~~spdg~~Lasgs----D-----g--~I~Iw 750 (837)
++.++..+.+|.|+-.|+...... ..+..- .+.---+++++....|++.- + + .|-+|
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 778888999999999998865432 222211 11222367777655554432 2 2 57778
Q ss_pred EcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEec
Q 003236 751 SIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLS 806 (837)
Q Consensus 751 Dl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs-~dg~I~IwDl~s~~~~~l~ 806 (837)
|+.+. +.+..+.. ...+.++.++.+.+ .|++.+ .++.|.+||..+++.+...
T Consensus 275 D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 275 DLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp ETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred ECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 88877 66666654 34577899998775 555554 4679999999999988443
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.06 E-value=0.003 Score=66.57 Aligned_cols=200 Identities=13% Similarity=0.182 Sum_probs=115.0
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
...+.+-...|..++|+|+.+ ++++....+.|..++. +++.+..+.-. .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 345667677799999999755 6666677788888886 47777776433 35688999988887777666689999999
Q ss_pred cCCCCce--e---EEe-----eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC---CeeeeEEe---------cCC
Q 003236 626 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGVFK---------CQS 683 (837)
Q Consensus 626 l~~~~~~--~---~~~-----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---~~~i~~~~---------~~~ 683 (837)
+...... . ..+ ..++..+..++|++.++.++++.- ..-..+|.+.. ...+.... .-.
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceec
Confidence 8432211 1 111 124466899999999888886654 44455555543 21111111 123
Q ss_pred CeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEE
Q 003236 684 GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW 750 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~---------~~V~sl~~spdg~~LasgsDg~I~Iw 750 (837)
.+..+.++|..+.+++-+. +..|.++| .+++.+..+.-.. .....|+|+++|++.++.--+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 5788999998877776665 56888889 5566555443221 25779999999987776655555554
No 352
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.01 E-value=0.0025 Score=70.33 Aligned_cols=213 Identities=13% Similarity=0.092 Sum_probs=124.6
Q ss_pred cEEEEeCCCCeEEEEecc-CCCCeEEEE---EcCC----CCEEEEEeC----------CCeEEEEEcCCC-----CceeE
Q 003236 578 KAVLWCTESFTVKSTLEE-HTQWITDVR---FSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSLR 634 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~-h~~~I~~l~---fspd----g~~Latgs~----------Dg~I~IWDl~~~-----~~~~~ 634 (837)
.|+|.|..+.+.+..+.- ....|++++ |..+ ..+|++|+. .|.|.++++... +....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 578888888777755532 223344443 3332 467777754 289999999984 22222
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECC-
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVE- 712 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~- 712 (837)
......++|++++-. ++.++++. ++.|.+|++...+ ..........+..+.....++++++|.....|.++..+
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 334457889998877 34455444 5789999998877 55555444444444444446799999988888877443
Q ss_pred -CCeEEEEE-cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC--------CceeEEEeecCCCceEEE---EEeC
Q 003236 713 -TQVCRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS--------KGECIHELSCTGNKFHSC---VFHP 778 (837)
Q Consensus 713 -s~~~~~~l-~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~--------~~~~i~~~~~~~~~I~sv---~fsp 778 (837)
..+....- ......++++.|-++++.++++. +|.|.++...... ....+..+. .+..|+++ .+.|
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeee
Confidence 32222221 22455788999986666777777 9999999886311 112222332 34556666 4445
Q ss_pred --CCC------EEEEEEcCCeEEEE
Q 003236 779 --TFP------SLLVIGCYETLELW 795 (837)
Q Consensus 779 --dg~------~L~sgs~dg~I~Iw 795 (837)
.+. .++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 222 48888889987733
No 353
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.01 E-value=0.00079 Score=76.55 Aligned_cols=133 Identities=8% Similarity=0.143 Sum_probs=90.3
Q ss_pred EEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE----eCCCc----EEEEECCCCee----eeEEecCCCeeEE
Q 003236 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC----DNNSE----IRYWSINNGSC----AGVFKCQSGATQM 688 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg----s~Dg~----I~vwDl~t~~~----i~~~~~~~~i~sl 688 (837)
+.++.+...+..+..+........++.|+-..++.+.+. +.+|. ..+|++...+. +..+...+.+.|+
T Consensus 186 l~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~c 265 (545)
T PF11768_consen 186 LHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICC 265 (545)
T ss_pred EEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEE
Confidence 333333333333333333344556777776555555443 22332 34566654432 2344557889999
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 689 ~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
+++|+...++.|+.||.|.+||...+..... ...-.++.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999999987744332 3455678999999999999999 699999998754
No 354
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.99 E-value=0.0012 Score=74.54 Aligned_cols=207 Identities=14% Similarity=0.120 Sum_probs=122.3
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe--cc------CCCCeEEEEEcC-----CC-
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 609 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~------h~~~I~~l~fsp-----dg- 609 (837)
.|.+...+....++|++++.|.=| ++|+|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 477888888889999999998555 9999999999999999888777552 22 345688888863 22
Q ss_pred --CEEEEEeCCCeEEEEEcCC---CCcee---EEeeccccceEEEE-EcCCC--------------------CeEEEEEe
Q 003236 610 --SRLATSSADRTVRVWDTEN---PDYSL---RTFTGHSTTVMSLD-FHPSK--------------------EDLLCSCD 660 (837)
Q Consensus 610 --~~Latgs~Dg~I~IWDl~~---~~~~~---~~~~~h~~~V~sl~-fspdg--------------------~~llasgs 660 (837)
-+|++|...|.+.+|.+.- +...+ .....+.+.|..|. |+.+. ..+++.++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4688999999999998752 22211 11224556666665 32221 12444444
Q ss_pred CCCcEEEEECCCCeeeeEEecCCCe--eEEEEe-----cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC----CCEEE
Q 003236 661 NNSEIRYWSINNGSCAGVFKCQSGA--TQMRFQ-----PRLGRILAAAIENYISILDVETQVCRLKLQGHK----NQVHS 729 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~~~~~i--~sl~~s-----p~g~~llags~dg~I~iwDl~s~~~~~~l~~h~----~~V~s 729 (837)
+..|+++...+.+...... ...+ ..+.+. ..+..|++...+|.|++|.+-.-+.+..+.-.. ..+..
T Consensus 234 -e~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 234 -ESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp -SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred -ccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 6789999998887766555 3322 233442 245668888899999999999988877766432 23445
Q ss_pred EEEcCCCCEEEEEeCCeEEEEEcC
Q 003236 730 VCWNTSGEYLASVSDELVRVWSIG 753 (837)
Q Consensus 730 l~~spdg~~LasgsDg~I~IwDl~ 753 (837)
.+++++|..++-.+...+.++.+-
T Consensus 312 ssis~~Gdi~~~~gpsE~~l~sv~ 335 (395)
T PF08596_consen 312 SSISRNGDIFYWTGPSEIQLFSVW 335 (395)
T ss_dssp -EE-TTS-EEEE-SSSEEEEEEEE
T ss_pred cEECCCCCEEEEeCcccEEEEEEE
Confidence 677888998887776666655543
No 355
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.98 E-value=3.5e-06 Score=94.99 Aligned_cols=197 Identities=12% Similarity=0.116 Sum_probs=126.8
Q ss_pred CCeEEEEEcCCC--CEEEEEECCCcEEEEeCCCCeE--EEEeccCCCCeEEEEEcC-CCCEEEEEeC----CCeEEEEEc
Q 003236 556 SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSSA----DRTVRVWDT 626 (837)
Q Consensus 556 ~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~I~~l~fsp-dg~~Latgs~----Dg~I~IWDl 626 (837)
..+.|+++..+. .++++|..+|.|.+-....... .....+|...+++++|++ |.+.||.|-. |..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 347778776543 4789999999999987654222 244567888999999998 5566666632 568999999
Q ss_pred CCCC----ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEecCCCeeEEEEecCCCEEEEEE
Q 003236 627 ENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 627 ~~~~----~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~~~~i~sl~~sp~g~~llags 701 (837)
.+.- .......+......+++|..+ ..++.+|.....|.++|++-.. ....+. ...+..+.+.|-....++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCceecc
Confidence 8641 111112223455668899865 4577788888899999998322 111111 12455667777434455666
Q ss_pred cCCeEEEEEC-CCCe-EEEEEcCC----CCCEEEEEEcCCCC-EEEEEe--CCeEEEEEcCC
Q 003236 702 IENYISILDV-ETQV-CRLKLQGH----KNQVHSVCWNTSGE-YLASVS--DELVRVWSIGS 754 (837)
Q Consensus 702 ~dg~I~iwDl-~s~~-~~~~l~~h----~~~V~sl~~spdg~-~Lasgs--Dg~I~IwDl~s 754 (837)
.|+.|.+||. ++-+ ++..+... ...+..++|+|... .+++.. .++|++||+..
T Consensus 215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 6999999994 3322 22222211 22489999999643 455555 56999999864
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.98 E-value=0.0013 Score=72.58 Aligned_cols=208 Identities=13% Similarity=0.103 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCceeEEe-eccccceEEEE---EcCC---CCeEEEEEeC---------C-CcEEEEECCCC-----e--e
Q 003236 620 TVRVWDTENPDYSLRTF-TGHSTTVMSLD---FHPS---KEDLLCSCDN---------N-SEIRYWSINNG-----S--C 675 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~-~~h~~~V~sl~---fspd---g~~llasgs~---------D-g~I~vwDl~t~-----~--~ 675 (837)
.|++.|..+.+. +..+ ......+.+++ +..+ ...+++.|.. . |.|.++++... + .
T Consensus 3 ~i~l~d~~~~~~-~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEV-LDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSE-EEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeE-EEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 577777766553 2222 22233444443 3322 1445555532 2 88999999884 2 3
Q ss_pred eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEE-cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003236 676 AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 752 (837)
Q Consensus 676 i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~-~~~~l-~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl 752 (837)
+......+.|++++-. +++ ++++..+.|.+|++...+ ....- ......+.++... +++|++|. ...|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 3344557888888877 345 444456899999988776 33322 2233466666665 55888888 666777655
Q ss_pred CCCCCceeEEE--eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-------C--cEE--EeccCCCCeeEE---E
Q 003236 753 GSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---A 816 (837)
Q Consensus 753 ~s~~~~~~i~~--~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s-------~--~~~--~l~~h~~~V~sl---a 816 (837)
+... ..+.. .......++++.|-++++.++++..+|.|.++.... + +.. ........|+++ +
T Consensus 157 ~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 4422 22222 233455688888886667899999999999987752 2 222 223445677777 4
Q ss_pred EeCC--C------CEEEEEECCCcEEE
Q 003236 817 ASTV--N------GMVASASHDKCVKI 835 (837)
Q Consensus 817 ~spd--g------~~LaSgs~DG~I~I 835 (837)
+.|. + ..++.++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 4441 2 24788889998863
No 357
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.95 E-value=0.018 Score=67.84 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=89.9
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEecc--CCC--CeEEEEEcCCCCEEEEEe------CCCeEEEEEcCCCCceeEEee
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ--WITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~--~I~~l~fspdg~~Latgs------~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
..+++++.|+.|...|.++++.+-.... +.. .+++--..-++ .|++++ .+|.|+.+|.++++..-....
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4677788899999999999999866542 111 11111001134 455543 268999999998875332211
Q ss_pred cc------------------------------ccceE-EEEEcCCCCeEEEEEeC----CC-----------cEEEEECC
Q 003236 638 GH------------------------------STTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWSIN 671 (837)
Q Consensus 638 ~h------------------------------~~~V~-sl~fspdg~~llasgs~----Dg-----------~I~vwDl~ 671 (837)
.. ...++ .+++.+..+.+++..+. ++ .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 11 01111 34666665544433322 12 68888999
Q ss_pred CCeeeeEEec-CC---------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEE
Q 003236 672 NGSCAGVFKC-QS---------GATQMRFQPRLG---RILAAAIENYISILDVETQVCR 717 (837)
Q Consensus 672 t~~~i~~~~~-~~---------~i~sl~~sp~g~---~llags~dg~I~iwDl~s~~~~ 717 (837)
+|+....+.. +. ...-+.+..+++ .++.+..+|.++++|.++++.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9999988874 11 112223334555 5678888999999999999876
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.88 E-value=0.0051 Score=66.01 Aligned_cols=215 Identities=14% Similarity=0.132 Sum_probs=124.6
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee---------
Q 003236 607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--------- 677 (837)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~--------- 677 (837)
..++.|+.|+.+| |+++++........... ...|..+...++-+.+++.+ |+.|+++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3577899999999 99999943332223222 23399999998877666554 5999999987644333
Q ss_pred ------EEecCCCeeEEE--EecCCCEEEEEEcCCeEEEEECCCC-----eEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Q 003236 678 ------VFKCQSGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSD 744 (837)
Q Consensus 678 ------~~~~~~~i~sl~--~sp~g~~llags~dg~I~iwDl~s~-----~~~~~l~~h~~~V~sl~~spdg~~LasgsD 744 (837)
.+....++..++ -...+...+++.....|.+|..... +...++. -...+.+++|. +..|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 122223344444 2234555666666778988887653 3445554 45788999998 667877877
Q ss_pred CeEEEEEcCCCCCceeEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCCCe
Q 003236 745 ELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLV 812 (837)
Q Consensus 745 g~I~IwDl~s~~~~~~i~~~~~~----------~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V 812 (837)
+...+.|+.++.. ..+...... ..++..+. -+++.+|++. +..-.+.|....... .+.- ...+
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W-~~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQW-SSAP 231 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcCCCCcCcccEEEc-CCch
Confidence 7799999997643 222211111 12222223 3344555442 333334454332211 1211 2355
Q ss_pred eEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 813 SSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 813 ~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.++++. ..||+..+.+ .|.||+
T Consensus 232 ~~~~~~--~pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 232 QSVAYS--SPYLIAFSSN-SIEVRS 253 (275)
T ss_pred hEEEEE--CCEEEEECCC-EEEEEE
Confidence 566664 4577776654 488874
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.021 Score=65.17 Aligned_cols=191 Identities=12% Similarity=0.080 Sum_probs=101.5
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-c----eeEEeeccccceEEEEEcCCC
Q 003236 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y----SLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~----~~~~~~~h~~~V~sl~fspdg 652 (837)
.|.||+.. |+.+..+.-..+.|.++.|+.+. .|++...||.+++||+.... . .+....-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 48999854 55665554444899999999864 56666799999999986322 0 011111111222222333233
Q ss_pred CeEEEEEeCCCcEEEEECCCCe-eeeEE-ecCC---------CeeE-EEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 653 EDLLCSCDNNSEIRYWSINNGS-CAGVF-KCQS---------GATQ-MRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~-~i~~~-~~~~---------~i~s-l~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
+++.. .++.|.+.+-.... ..+.+ .... .... ..++.+....+....++.+.+.+...... +
T Consensus 140 --ivvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 33222 24444444322211 11111 1001 0111 23444444555555556666554332211 1
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCC
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTF 780 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg 780 (837)
. ..+++..+++||++++||.-. +|.+.|.+..-. +.+.++... ......+.|.-+.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCC
Confidence 1 346899999999999999988 788888876544 344444433 3445566666554
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.82 E-value=6e-06 Score=93.15 Aligned_cols=197 Identities=18% Similarity=0.245 Sum_probs=134.5
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCce-eEEeeccccceEEEEEcCCCCeEEEEEe----CCCcEEEEEC
Q 003236 598 QWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSI 670 (837)
Q Consensus 598 ~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs----~Dg~I~vwDl 670 (837)
..+.|+++..+ ...+++|..+|.|.+-.+...... .....++...+++++|++-....|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34566666553 346888999999999988765543 4556778899999999987666776663 4668999999
Q ss_pred CCC--eeeeEEe----cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-EEEEEcCCCCCEEEEEEcC-CCCEEEEE
Q 003236 671 NNG--SCAGVFK----CQSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKLQGHKNQVHSVCWNT-SGEYLASV 742 (837)
Q Consensus 671 ~t~--~~i~~~~----~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~-~~~~l~~h~~~V~sl~~sp-dg~~Lasg 742 (837)
.++ .+..... ...+..+++|..+.+.+++|.....+.++|++... ....+ .+..+..+..+| .+.|+++.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 2222111 23456788999888888899999999999998432 11111 234567788888 78888888
Q ss_pred eCCeEEEEE-cCCCCCceeEEEeecC----CCceEEEEEeCCCCE-EEEEEcC-CeEEEEECC
Q 003236 743 SDELVRVWS-IGSGSKGECIHELSCT----GNKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT 798 (837)
Q Consensus 743 sDg~I~IwD-l~s~~~~~~i~~~~~~----~~~I~sv~fspdg~~-L~sgs~d-g~I~IwDl~ 798 (837)
.||.|.+|| .+.-+ ..+..+... ...+..++|.|...- +++...| ++|++||+.
T Consensus 215 ~dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 899999999 43322 122222212 234889999997643 4444444 489999974
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.80 E-value=0.013 Score=67.12 Aligned_cols=221 Identities=12% Similarity=0.070 Sum_probs=125.7
Q ss_pred CeEEEEEcCCCCEEEEE-eCC----CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC----------C
Q 003236 599 WITDVRFSPSLSRLATS-SAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------S 663 (837)
Q Consensus 599 ~I~~l~fspdg~~Latg-s~D----g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D----------g 663 (837)
.+..++++|++++||.+ +.. ..|+++|+.+++.....+... ....+.|.+++..++++...+ .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467899999998865 333 369999999976433333321 223499999988888776433 2
Q ss_pred cEEEEECCCCeee--eEEec--CCC-eeEEEEecCCCEEEEEEcC----CeEEEEECCCC-----eEEEEEcCCCCCEEE
Q 003236 664 EIRYWSINNGSCA--GVFKC--QSG-ATQMRFQPRLGRILAAAIE----NYISILDVETQ-----VCRLKLQGHKNQVHS 729 (837)
Q Consensus 664 ~I~vwDl~t~~~i--~~~~~--~~~-i~sl~~sp~g~~llags~d----g~I~iwDl~s~-----~~~~~l~~h~~~V~s 729 (837)
.|++|++.+.... ..+.. ... ...+..+++++++++.... ..|.+.|+..+ ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 4788888776432 34433 223 5678889999998876553 45888898874 333333323333334
Q ss_pred EEEcCCCCEEEEEe----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-C--eEEEEECC-CCc
Q 003236 730 VCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-E--TLELWNMT-ENK 801 (837)
Q Consensus 730 l~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g--~I~IwDl~-s~~ 801 (837)
+... .+.+++.+. .+.|...++...........+..+...+.-..+...+.+|++...+ + .|+++++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 444444443 3477778887765322333444455543333444445566655544 3 79999999 554
Q ss_pred EEEecc-CCCCeeEEEEeCCCC
Q 003236 802 TLTLSA-HDKLVSSLAASTVNG 822 (837)
Q Consensus 802 ~~~l~~-h~~~V~sla~spdg~ 822 (837)
...+.. -.+.|..+...+++.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-S
T ss_pred EeeecCCcceEEeccCCCCCCC
Confidence 443332 233455555455544
No 362
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.069 Score=56.24 Aligned_cols=270 Identities=10% Similarity=0.040 Sum_probs=151.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
+-+..+.++ +++...+..+.-++|+|+.+......+.. -.+.-.++.. .|++..++..|.-+.+.|+.+...+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345667776 45777787888899999986544333321 1133334433 58899999877778899998876544
Q ss_pred E--EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 634 R--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 634 ~--~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
. .+.........++.+ |+ ..+.+..|+-+.+.|+... ..+........+.++..+++ +.+....+-.+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEE
Confidence 2 233334444667776 33 4445566888999999764 34444455556777777765 4444445556777
Q ss_pred EECCCCeEEEEEcC-CCCCEEEE-EEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 709 LDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 709 wDl~s~~~~~~l~~-h~~~V~sl-~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
.|....+....+.. ....+.++ .+.-.+++..... +..+-+.|+.+.........+...+.....+... +.++..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe
Confidence 78776653333321 12222222 2223455555555 6667777776653322222222222222333322 223333
Q ss_pred EEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 786 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 786 gs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..+ ...+.|....+.. ...+....+.+.+.+-+.+++.+...++.+.||+
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 3333 3444454443333 1222223344555555667888999999999986
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.0089 Score=65.21 Aligned_cols=219 Identities=11% Similarity=0.049 Sum_probs=132.9
Q ss_pred EEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe
Q 003236 602 DVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (837)
Q Consensus 602 ~l~fspdg~~L-atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~ 680 (837)
...|.++...| .+--..+.|.-|+..+++. ..+. +...+.++.....+. .|+++ +..+.+++.+++..+..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g-~Lv~~--~~g~~~~~~~~~~~~t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGG-RLIAC--EHGVRLLDPDTGGKITLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCC-eEEEE--ccccEEEeccCCceeEEec
Confidence 33466766644 4444577889998886653 3333 223344444443434 44455 3447778876666533332
Q ss_pred c------CCCeeEEEEecCCCEEEEEEc-----------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 681 C------QSGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 681 ~------~~~i~sl~~sp~g~~llags~-----------dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
. ....+.+.+.|+|.+.+..-. -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+.
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 1 234567888898776665433 134566665 4566666666666678899999998888776
Q ss_pred --CCeEEEEEcCC--CCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEE-EeccCCCCeeEE
Q 003236 744 --DELVRVWSIGS--GSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSL 815 (837)
Q Consensus 744 --Dg~I~IwDl~s--~~~~--~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~s~~~~-~l~~h~~~V~sl 815 (837)
.+.|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++++ .+.-....++++
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 57888888762 2111 11222223456667788888888665555554 99999998 7766 444444778888
Q ss_pred EEeC-CCCEEEEEE
Q 003236 816 AAST-VNGMVASAS 828 (837)
Q Consensus 816 a~sp-dg~~LaSgs 828 (837)
+|-- +.+.|+..+
T Consensus 261 ~FgG~~~~~L~iTs 274 (307)
T COG3386 261 AFGGPDLNTLYITS 274 (307)
T ss_pred eEeCCCcCEEEEEe
Confidence 8864 445444433
No 364
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.004 Score=71.95 Aligned_cols=139 Identities=13% Similarity=0.100 Sum_probs=95.1
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
++..+.+++.|+..+.+.+|....+... .....+-.+.+..++.|++..++|.|+..|.|.|
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~------------------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMR------------------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhh------------------cccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence 3456688999999999998866544211 1111123444667788888889999999999999
Q ss_pred EeCCCCeE-----EEEe-ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---CceeEEeeccccceEEEEEcCCC
Q 003236 582 WCTESFTV-----KSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 582 Wd~~t~~~-----~~~l-~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~---~~~~~~~~~h~~~V~sl~fspdg 652 (837)
+-+..... +..+ ..|...|+|++|++++..|++|...|+|.+-.++.. ......+....+.|.-|++..
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-- 180 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-- 180 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--
Confidence 97654211 1111 247889999999999999999999999999888762 112344445567788887763
Q ss_pred CeEEEEEe
Q 003236 653 EDLLCSCD 660 (837)
Q Consensus 653 ~~llasgs 660 (837)
.++|++..
T Consensus 181 ~~LLVStl 188 (726)
T KOG3621|consen 181 SYLLVSTL 188 (726)
T ss_pred ceehHhhh
Confidence 34554443
No 365
>PRK10115 protease 2; Provisional
Probab=97.70 E-value=0.079 Score=64.56 Aligned_cols=238 Identities=10% Similarity=-0.007 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEc
Q 003236 558 VESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT 626 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl 626 (837)
+..+.|||||++|+.+... ..|++.|+.++..+........ ..++|.+|++.|+....+ ..|+.+++
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 6678899999998876432 3688889988764322211211 469999998877665442 36888888
Q ss_pred CCCCc-eeEEeeccccceE-EEEEcCCCCeEEEEEe--CCCcEEEEECC--CCeeeeEEecCCCeeEEEEecCCCEEEEE
Q 003236 627 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 627 ~~~~~-~~~~~~~h~~~V~-sl~fspdg~~llasgs--~Dg~I~vwDl~--t~~~i~~~~~~~~i~sl~~sp~g~~llag 700 (837)
.++.. ....+........ .+..+.++..+++.+. .++.+.+|+.. .+.....+.....+..-..+. +..++..
T Consensus 207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ly~~ 285 (686)
T PRK10115 207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHY-QHRFYLR 285 (686)
T ss_pred CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeC-CCEEEEE
Confidence 87621 2233333223233 3333447776665443 34678888853 343333333333322222232 3445444
Q ss_pred EcC----CeEEEEECCCCeEEEEEcCC-C-CCEEEEEEcCCCCEEEEEe-CCe--EEEEEcCCCCCceeEEEee-cCCCc
Q 003236 701 AIE----NYISILDVETQVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DEL--VRVWSIGSGSKGECIHELS-CTGNK 770 (837)
Q Consensus 701 s~d----g~I~iwDl~s~~~~~~l~~h-~-~~V~sl~~spdg~~Lasgs-Dg~--I~IwDl~s~~~~~~i~~~~-~~~~~ 770 (837)
+.. ..|...++........+..+ . ..|..+.+.. +.++++.. ++. |.+++..++ .+..+. .....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~ 360 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY 360 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence 432 24555555522112233334 3 3678888873 33444444 664 445554322 222222 11222
Q ss_pred eEEEEEe--CCCC-EEEEEEcC---CeEEEEECCCCcEE
Q 003236 771 FHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL 803 (837)
Q Consensus 771 I~sv~fs--pdg~-~L~sgs~d---g~I~IwDl~s~~~~ 803 (837)
+..+.++ +++. .+++.++. +.|+.||+.+++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 3333344 4444 34444332 38899998877643
No 366
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.68 E-value=0.0048 Score=74.41 Aligned_cols=140 Identities=9% Similarity=0.116 Sum_probs=97.5
Q ss_pred CEEEEE-eCCCeEEEEEcCCCCceeEEeeccccc-eEEEEEcC-----CCCeEEEEEeCCCcEEEEECCCCe--eee---
Q 003236 610 SRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG--- 677 (837)
Q Consensus 610 ~~Latg-s~Dg~I~IWDl~~~~~~~~~~~~h~~~-V~sl~fsp-----dg~~llasgs~Dg~I~vwDl~t~~--~i~--- 677 (837)
++|+.. .....|+-.|++.++. +..+..|... |..++-.. .....+ .|-.+..|..||.+-.. ++.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccc
Confidence 344433 3467899999998875 6666666543 55554321 112233 46668889999998632 332
Q ss_pred -EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEc
Q 003236 678 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 752 (837)
Q Consensus 678 -~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl 752 (837)
.+.......|++-+.+ ++|++|+.+|.|++||--.......+.+-..+|.+|+.+.||++|++.++..|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCC-ceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 2223445667766554 7899999999999999544344445667788999999999999999999999999886
No 367
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.67 E-value=0.013 Score=64.76 Aligned_cols=241 Identities=11% Similarity=0.112 Sum_probs=122.4
Q ss_pred eCCCCeEEEEeccCCCC-----eEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCCCceeEEeeccc-cceEEEEEcCCCC
Q 003236 583 CTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSA-DR--TVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKE 653 (837)
Q Consensus 583 d~~t~~~~~~l~~h~~~-----I~~l~fspdg~~Latgs~-Dg--~I~IWDl~~~~~~~~~~~~h~-~~V~sl~fspdg~ 653 (837)
|..+|..+..+..+... .+.=+|.+||+.|+.++. || .+++.|+.+++ +..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence 66777777777544332 233467778877666554 54 56677777755 44444433 2233566778877
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-EEEEe--cCCCEEEEEEc-----------------------CCeEE
Q 003236 654 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQ--PRLGRILAAAI-----------------------ENYIS 707 (837)
Q Consensus 654 ~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-sl~~s--p~g~~llags~-----------------------dg~I~ 707 (837)
.+++.. .+..|+..|+.+.+....+..+.... ...|. .++.. +++.. ...|.
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~ 171 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIF 171 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEE
Confidence 666544 35689999999988777777655544 34553 34444 33332 12477
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCC-----eEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCC
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVSDE-----LVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spdg-~~LasgsDg-----~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg 780 (837)
..|+.+++....+. ....+..+.|+|.. .+|+.|.+| .-|||-+++... ...++.. .....+.-=-|.|||
T Consensus 172 ~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG 249 (386)
T PF14583_consen 172 TIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDG 249 (386)
T ss_dssp EEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTS
T ss_pred EEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCC
Confidence 77888887665555 56788899999965 455556644 247887765432 1222211 123334444689999
Q ss_pred CEEEEEEc-----CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 781 PSLLVIGC-----YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 781 ~~L~sgs~-----dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
..|..-+. +..|.-+|+.+++...+..- .....+-.++||+++|-=+.|
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCCEEEecCCC
Confidence 88776543 33677888888875533222 245566667888888755544
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.02 Score=62.51 Aligned_cols=219 Identities=12% Similarity=0.113 Sum_probs=132.8
Q ss_pred EEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee--
Q 003236 561 CHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-- 637 (837)
Q Consensus 561 l~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~-- 637 (837)
-.|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++.....+..|+++.. -+++++.+++.. +..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~-~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGK-ITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCce-eEEeccc
Confidence 45667666 4445556788889988765433 222 3344555555555556666543 366777655443 11111
Q ss_pred --c-cccceEEEEEcCCCCeEEEEEe-----C-----CCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 003236 638 --G-HSTTVMSLDFHPSKEDLLCSCD-----N-----NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 638 --~-h~~~V~sl~fspdg~~llasgs-----~-----Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d 703 (837)
+ -....+.+...|+|...+-+-+ . -|.|+.+|. .+..++.+.. -...+.++|+|+++.++.+...
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1 1245667888999875553333 1 133555554 3555544443 3446789999999988888775
Q ss_pred -CeEEEEECCC--C----e-EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 704 -NYISILDVET--Q----V-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 704 -g~I~iwDl~s--~----~-~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
+.|..|++.. + . ....+..+.+..-.++.+.+|.+.+++. +| .|.+|+.. + +.+..+......+++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t~ 259 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPTN 259 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C---cEEEEEECCCCCCcc
Confidence 7888888762 1 1 1222333456677888888999886554 44 89999987 5 566666666567777
Q ss_pred EEEe-CCCCEEEEEEcC
Q 003236 774 CVFH-PTFPSLLVIGCY 789 (837)
Q Consensus 774 v~fs-pdg~~L~sgs~d 789 (837)
++|- ++.+.|++.+..
T Consensus 260 ~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 260 PAFGGPDLNTLYITSAR 276 (307)
T ss_pred ceEeCCCcCEEEEEecC
Confidence 7774 455555555543
No 369
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.51 E-value=0.033 Score=62.18 Aligned_cols=221 Identities=10% Similarity=0.095 Sum_probs=109.0
Q ss_pred CCCEEEEEE-CCCcEEEEeCC----CCeEEEEecc---CC----CCeEEEEEcCCCCEEEEEeC------CCeEEEEEcC
Q 003236 566 DGKLLATGG-HDKKAVLWCTE----SFTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE 627 (837)
Q Consensus 566 dg~~Lasgs-~Dg~I~VWd~~----t~~~~~~l~~---h~----~~I~~l~fspdg~~Latgs~------Dg~I~IWDl~ 627 (837)
+.++|++.+ ..+.|+|+|+. ..+..++++. +. ..-..+.-.|+|..++++-. -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 77899999987 3455566542 11 12233444578888887532 2467777777
Q ss_pred CCCceeEEeec---cccceEEEEEcCCCCeEEEEEeC--------------------CCcEEEEECCCCeeeeEEecCC-
Q 003236 628 NPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDN--------------------NSEIRYWSINNGSCAGVFKCQS- 683 (837)
Q Consensus 628 ~~~~~~~~~~~---h~~~V~sl~fspdg~~llasgs~--------------------Dg~I~vwDl~t~~~i~~~~~~~- 683 (837)
+-+. ...... ....-+.+-|.|..+ +++|... ..++.+||+.+.+.+.++....
T Consensus 166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 6442 222222 223456777888755 4445432 3589999999999999999753
Q ss_pred --CeeEEEEec--CCCEEEEEE-cCCeEEEE-ECCCC----eEEEEEcCC-----------------CCCEEEEEEcCCC
Q 003236 684 --GATQMRFQP--RLGRILAAA-IENYISIL-DVETQ----VCRLKLQGH-----------------KNQVHSVCWNTSG 736 (837)
Q Consensus 684 --~i~sl~~sp--~g~~llags-~dg~I~iw-Dl~s~----~~~~~l~~h-----------------~~~V~sl~~spdg 736 (837)
....++|.. +..+-++++ ....|..| ..+.+ +.+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 245677754 444444443 34455444 32333 222222211 2457899999999
Q ss_pred CEEEEEe--CCeEEEEEcCCCCCceeEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 003236 737 EYLASVS--DELVRVWSIGSGSKGECIHELSCTG----------------NKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 737 ~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~----------------~~I~sv~fspdg~~L~sgs~ 788 (837)
++|.++. +|.|+.||+......+.+..+...+ +...-+..|-||+.|++.++
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 9999988 9999999999877666655433211 22366789999999888764
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.017 Score=60.41 Aligned_cols=230 Identities=12% Similarity=0.096 Sum_probs=141.7
Q ss_pred EEEEcCCC-CEEEEEECCCc-EEEEeCCCCeEEEEeccCCCC--eEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 003236 560 SCHFSPDG-KLLATGGHDKK-AVLWCTESFTVKSTLEEHTQW--ITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 630 (837)
Q Consensus 560 sl~fSpdg-~~Lasgs~Dg~-I~VWd~~t~~~~~~l~~h~~~--I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~ 630 (837)
.|+|+|.- .-++.+-.-|+ ..+||........++...++. --.=+|++||.+|+..-.| |.|-|||.+..-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 57888854 35666666665 467888877666555322221 1223699999999876543 789999999766
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEe------C-----------CCcEEEEECCCCeeeeEEecC-----CCeeEE
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------N-----------NSEIRYWSINNGSCAGVFKCQ-----SGATQM 688 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs------~-----------Dg~I~vwDl~t~~~i~~~~~~-----~~i~sl 688 (837)
..+-.+..|.-....+.|.+||..+++..+ . .-.+.+.|..+|..+...... -.+..+
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl 231 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL 231 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence 667788888888889999999987776543 0 113444555556555544432 346777
Q ss_pred EEecCCCEEEEEEcCCe-----EEEEECCCCeEEEEEcC-------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 003236 689 RFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS 754 (837)
Q Consensus 689 ~~sp~g~~llags~dg~-----I~iwDl~s~~~~~~l~~-------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s 754 (837)
+..+++..++.+-..|- -.+=-...++.+.-+.- ....|-+|+.+.+..+++..+ .+...+||..+
T Consensus 232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t 311 (366)
T COG3490 232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT 311 (366)
T ss_pred eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence 77777665554443331 11111122333322221 234677888887777777777 55899999999
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
+. .+.... -..++-.-+...-+++.+..|.+.++.
T Consensus 312 G~---vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 312 GA---VVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred Cc---EEeccc----ccccccceeccCceEEecCCceEEecc
Confidence 83 332211 111222334444578888888888874
No 371
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.45 E-value=0.31 Score=58.91 Aligned_cols=166 Identities=10% Similarity=0.044 Sum_probs=106.7
Q ss_pred cEEEEECCCCeeeeEEecC--C---CeeEEEEecC-CCEEEEEEc----------CCeEEEEECCCCeEEEEEcC--CCC
Q 003236 664 EIRYWSINNGSCAGVFKCQ--S---GATQMRFQPR-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKN 725 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~--~---~i~sl~~sp~-g~~llags~----------dg~I~iwDl~s~~~~~~l~~--h~~ 725 (837)
.++++|-++.+.+...... . .+.++.|..| +.++++|+. .|.|.+|.......+..... -.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 4667777776655544432 2 2445557777 566666664 47888888776333332222 234
Q ss_pred CEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCCCcEE
Q 003236 726 QVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTL 803 (837)
Q Consensus 726 ~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I--wDl~s~~~~ 803 (837)
.+.++..- +|++|| +-...|++|++.+. +.++.-..+...+..+.+.-.++.|++|.--+.+.+ |+...|...
T Consensus 831 av~aL~~f-ngkllA-~In~~vrLye~t~~---~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ 905 (1096)
T KOG1897|consen 831 AVYALVEF-NGKLLA-GINQSVRLYEWTTE---RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFE 905 (1096)
T ss_pred ceeehhhh-CCeEEE-ecCcEEEEEEcccc---ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceE
Confidence 45544432 455444 44778999999876 556666667788999999999999999999886555 455555455
Q ss_pred --EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 804 --TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 804 --~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
.-..+...++++.+-.+..++ .+..+|.+++
T Consensus 906 evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~ 938 (1096)
T KOG1897|consen 906 EVARDYNPNWMTAVEILDDDTYL-GAENSGNLFT 938 (1096)
T ss_pred EeehhhCccceeeEEEecCceEE-eecccccEEE
Confidence 445677888888886555444 4556676654
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.44 E-value=0.036 Score=63.25 Aligned_cols=188 Identities=9% Similarity=0.101 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-----CCeeEE-E---E
Q 003236 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQM-R---F 690 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-----~~i~sl-~---~ 690 (837)
.|+||+..... +..+.-..+.|.++.|+.+. .++ .-..||.+++||+. |+. .+... ..|... . +
T Consensus 62 ~I~iys~sG~l--l~~i~w~~~~iv~~~wt~~e-~Lv-vV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSIPWDSGRIVGMGWTDDE-ELV-VVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCE--eEEEEECCCCEEEEEECCCC-eEE-EEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccc
Confidence 36666665432 22222222789999999864 355 44469999999997 333 22221 122211 1 1
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCe-EEEEE---cCCCC------CEE-EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003236 691 QPRLGRILAAAIENYISILDVETQV-CRLKL---QGHKN------QVH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 691 sp~g~~llags~dg~I~iwDl~s~~-~~~~l---~~h~~------~V~-sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
..+.+ +++...++.|.+..--... ....+ ..... .+. -..++.+....+... ++.+.+.+-...
T Consensus 135 ~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~--- 210 (410)
T PF04841_consen 135 FYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF--- 210 (410)
T ss_pred cCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---
Confidence 12123 4444455555555332221 11111 11000 000 022334444444333 445554432221
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-ec-cCCCCeeEEEEeCCCC
Q 003236 759 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LS-AHDKLVSSLAASTVNG 822 (837)
Q Consensus 759 ~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l~-~h~~~V~sla~spdg~ 822 (837)
..+. ..+++..+++||++++|+.-..+|.+.+.+.+-.+.+. +. .-......+.|.-+..
T Consensus 211 ---~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 211 ---KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ---cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 0111 24689999999999999999999999998866555542 22 2235666777775543
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.43 E-value=0.012 Score=70.06 Aligned_cols=208 Identities=13% Similarity=0.117 Sum_probs=114.4
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe------CCC--eEEEEEcCCCCceeEEeeccccceEEEE
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs------~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~sl~ 647 (837)
+|.+.-.+-.....+.-..+....+.+.+++|+|+.++... .|. .|.+++... .......+ .....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~lt~g--~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQVLEG--HSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cceeeecC--CCCCCce
Confidence 55554443222222222223334688999999999887765 244 455555432 22222232 2378889
Q ss_pred EcCCCCeEEEEEe-----------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE---EECCC
Q 003236 648 FHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI---LDVET 713 (837)
Q Consensus 648 fspdg~~llasgs-----------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i---wDl~s 713 (837)
|+|+|..+.+... ..+.+.+.++..+.... .....|..+.|+|||.+++... ++.|++ .....
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9999775554432 12344444555444433 3356799999999999988876 477777 45444
Q ss_pred CeEE----EEEc-CCCCCEEEEEEcCCCCEEEEEeCC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 714 QVCR----LKLQ-GHKNQVHSVCWNTSGEYLASVSDE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 714 ~~~~----~~l~-~h~~~V~sl~~spdg~~LasgsDg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+... ..+. .-...+.++.|..++.+++...++ .+...++.... .....-......+..++-+++ .|++.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~--~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN--SDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc--ccccCCCCccCceEEEecCCc--eEEEE
Confidence 5311 1122 233346889999999976554444 34444444321 111011112445666666653 46666
Q ss_pred EcCCeEEE
Q 003236 787 GCYETLEL 794 (837)
Q Consensus 787 s~dg~I~I 794 (837)
..++.+.+
T Consensus 557 ~~~g~~~l 564 (591)
T PRK13616 557 DARAVLQL 564 (591)
T ss_pred cCCceEEe
Confidence 66664443
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00064 Score=77.37 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~-~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
.-.|.-+.|+|.-.++|++..+|.|.++.+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999988 778888887887787 99999999999999999999999999877544
Q ss_pred EEeeccccceEEEEEcC
Q 003236 634 RTFTGHSTTVMSLDFHP 650 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fsp 650 (837)
.....-...|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 43344456777777763
No 375
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.38 E-value=0.035 Score=56.54 Aligned_cols=209 Identities=11% Similarity=0.096 Sum_probs=115.0
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcC-CC-CeEEEEEeCCCcEEEEECCC--CeeeeEEe----
Q 003236 609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SK-EDLLCSCDNNSEIRYWSINN--GSCAGVFK---- 680 (837)
Q Consensus 609 g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp-dg-~~llasgs~Dg~I~vwDl~t--~~~i~~~~---- 680 (837)
+.++.+--..|.|.-||+..+......+.+.. +.++.+-- ++ ..+.+.++..-.|.-||... .+..+++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 34555555667788899887654333444322 22333321 21 23455555555566677432 22222211
Q ss_pred --cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC--------CCCEEEEEEcCCCCEEEEEe--CCeEE
Q 003236 681 --CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--------KNQVHSVCWNTSGEYLASVS--DELVR 748 (837)
Q Consensus 681 --~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h--------~~~V~sl~~spdg~~Lasgs--Dg~I~ 748 (837)
.....+.-..+|+|++ +.|.....-.++....+....-+.+| -.--+.++|+.+.+.+.... +-+|.
T Consensus 105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 1344566677899887 44443211112222222222222222 23345789988877666554 66887
Q ss_pred EEE--cCCCCC--ceeEEEeec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeC
Q 003236 749 VWS--IGSGSK--GECIHELSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST 819 (837)
Q Consensus 749 IwD--l~s~~~--~~~i~~~~~----~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~sp 819 (837)
-|| +.++.. .+.+..++. ..-..-.+++..+|...+++-..++|..+|..+|+++ .+.-....|+++||--
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 788 545432 233333332 1112234555667776666667779999999999988 5666688999999974
Q ss_pred C
Q 003236 820 V 820 (837)
Q Consensus 820 d 820 (837)
.
T Consensus 264 k 264 (310)
T KOG4499|consen 264 K 264 (310)
T ss_pred C
Confidence 3
No 376
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.33 E-value=0.13 Score=54.39 Aligned_cols=194 Identities=13% Similarity=0.080 Sum_probs=125.3
Q ss_pred eEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 588 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 588 ~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
+.+.++.. .....-.+.|..++.++-+.+.-| .|+.+|+.+++............-..++... +.++.-.-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence 34445532 233455788877787777777765 7999999998754443333333444555553 456666677899
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-----CCCEEEEEEcCCCCEE
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----KNQVHSVCWNTSGEYL 739 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h-----~~~V~sl~~spdg~~L 739 (837)
..+||..+.+.+..+...+.-..++ .++..|+.......|+++|.++.+....+... -..++.+.|. +|.+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999999999998877666666 56788999888999999999887666655432 2245667775 66666
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 003236 740 ASVS-DELVRVWSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~i~~~~~---------------~~~~I~sv~fspdg~~L~sgs~d 789 (837)
|-.- ...|...|..++ .++..+.. .....+.|+++|....|++.+..
T Consensus 189 ANVW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 6555 778888899888 44433211 13457999999998888777653
No 377
>PRK10115 protease 2; Provisional
Probab=97.31 E-value=0.25 Score=60.19 Aligned_cols=200 Identities=9% Similarity=0.024 Sum_probs=107.0
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-----CcEEE
Q 003236 598 QWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY 667 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~v 667 (837)
-.+..+.|+||+++|+.+.. ...|++.|+.++......+.+- -..++|.+|++.++++...+ ..|++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34677889999998887643 2368899998765322222221 14699999998888776533 46888
Q ss_pred EECCCC--eeeeEEecCC-Cee-EEEEecCCCEEEEEEc---CCeEEEEECC--CCeEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 668 WSINNG--SCAGVFKCQS-GAT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 668 wDl~t~--~~i~~~~~~~-~i~-sl~~sp~g~~llags~---dg~I~iwDl~--s~~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
+++.++ +....+.... ... .+..+.++++++..+. ++.+.+|+.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899887 4444444322 232 2333447777765554 3578888853 3332222222222222222 333333
Q ss_pred EEEEe-CC---eEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEe
Q 003236 739 LASVS-DE---LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTL 805 (837)
Q Consensus 739 Lasgs-Dg---~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~~l 805 (837)
++... +. .|...++.... . ...+..+ ...+..+.+..+ ..+++...++ .|+++|..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~--~-~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQ--Q-WEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcc--c-CeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 33333 22 34444444211 1 1222223 346777777733 3344444455 566667655544443
No 378
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0084 Score=67.25 Aligned_cols=133 Identities=13% Similarity=0.092 Sum_probs=95.2
Q ss_pred CCEEE-EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCC--------EEEEEeCCeEEEEEcCCCCCceeEEEe
Q 003236 694 LGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHEL 764 (837)
Q Consensus 694 g~~ll-ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~--------~LasgsDg~I~IwDl~s~~~~~~i~~~ 764 (837)
.+.|+ .+.....|+-.|++.|+.+..+.-|.. |+-+.+.|+.+ .|+.-+|..|.-||.+-.... .+...
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~ 422 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVV 422 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeee
Confidence 34444 344457899999999999999987766 77778887654 455556889999998854331 22222
Q ss_pred ec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 765 SC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 765 ~~----~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
.. ....+.|++-..+| +|++|+.+|.|++||- .+... .+.+...+|..|..+.+|++|+..+..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 22 23456666666665 6999999999999997 33322 677888999999999999988766543
No 379
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.23 E-value=0.039 Score=65.63 Aligned_cols=186 Identities=11% Similarity=0.049 Sum_probs=111.6
Q ss_pred cccceEEEEEcCCCCeEEEEEe-----CC--CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC--------
Q 003236 639 HSTTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE-------- 703 (837)
Q Consensus 639 h~~~V~sl~fspdg~~llasgs-----~D--g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d-------- 703 (837)
....+.+.+++|+|..++++.. .| ..|++++.. +.. ..+........-.|+|+++.+.+....
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEec
Confidence 3346789999999998877762 23 356666653 222 333333458889999998877776533
Q ss_pred ----CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEE---EcCCCCCceeE---EEeec-CCCceE
Q 003236 704 ----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW---SIGSGSKGECI---HELSC-TGNKFH 772 (837)
Q Consensus 704 ----g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~Iw---Dl~s~~~~~~i---~~~~~-~~~~I~ 772 (837)
+.+.+.+++.+.... .....|..+.|+|||..|+...++.|+|- ....+. ..+ ..+.. ....+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccCCccc
Confidence 233333444333222 23567999999999999998888888773 323332 111 11222 233468
Q ss_pred EEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 773 SCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~~l~~--h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
++.|..++.. +++..++ .|+..++.......+.. ....+.+|+-++. .|+.+..+|.+.
T Consensus 501 ~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 501 SLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cceEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 8999999984 4555544 45555555433222222 3567778877763 455556666544
No 380
>PRK13684 Ycf48-like protein; Provisional
Probab=97.18 E-value=0.55 Score=52.12 Aligned_cols=270 Identities=7% Similarity=-0.011 Sum_probs=132.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe----ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l----~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
...+++|+|..+..-+|+|. ++.|.. ..+.++.-... ......+.++.|.++ ..+++ +..+.| |...++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i--~~S~DgG 118 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLL--LHTTDGG 118 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceE--EEECCCC
Confidence 55789999986666676664 454322 11222222221 112334778888653 33444 455543 3333322
Q ss_pred ceeEEee---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCe
Q 003236 631 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 631 ~~~~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g~~llags~dg~ 705 (837)
....... ........+..... ..+++.+ ..|.|..= ...|+.-..+. ....+..+.+.+++. +++.+..|.
T Consensus 119 ~tW~~~~~~~~~~~~~~~i~~~~~-~~~~~~g-~~G~i~~S-~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g~~G~ 194 (334)
T PRK13684 119 KNWTRIPLSEKLPGSPYLITALGP-GTAEMAT-NVGAIYRT-TDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVSSRGN 194 (334)
T ss_pred CCCeEccCCcCCCCCceEEEEECC-Ccceeee-ccceEEEE-CCCCCCceeCcCCCcceEEEEEECCCCe-EEEEeCCce
Confidence 2122111 01111222222212 2233233 34433221 12222222111 134578888888764 445555565
Q ss_pred EEEE-ECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEE
Q 003236 706 ISIL-DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 706 I~iw-Dl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~fspdg~~L 783 (837)
+..- |-....-......-...++++.+.+++..++++..|.+++=+...+.....+..- ......+..+.+.+++. +
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~ 273 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-I 273 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-E
Confidence 5432 2221111111223456789999999999888887886653334444222221111 11234578889998876 5
Q ss_pred EEEEcCCeEEEEECCCCcEEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 784 LVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 784 ~sgs~dg~I~IwDl~s~~~~~l----~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++++.+|.|. .....++.... ..-....+.+.|..+++.+++ +..|.|.-|+
T Consensus 274 ~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 274 WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 5666677555 34455554322 122235778888776666554 5678877664
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.18 E-value=0.022 Score=68.80 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=98.7
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecC-------CCEEEEEEcCCeEEEEECCCC--eEEEE-E--cC
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-------LGRILAAAIENYISILDVETQ--VCRLK-L--QG 722 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~-------g~~llags~dg~I~iwDl~s~--~~~~~-l--~~ 722 (837)
+|........|+-.|++.|+.+..+..+..+.-..+.|+ ....++|-.++.+..||.+-. +++.. . ..
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 333334567899999999999999998776655666664 334688889999999999863 23311 1 12
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 723 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 723 h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
......|++-+.+|.+.+...+|.||+||-- +. .....+.+.+.+|..+..+.||++|++.+. ..|.|++.
T Consensus 576 ~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~--~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GK--RAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCceEEEEeCCCcEEeeccc-ch--hhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 3456788888777765544449999999943 32 344456677899999999999998776654 46777764
No 382
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.17 E-value=0.075 Score=60.87 Aligned_cols=145 Identities=10% Similarity=0.098 Sum_probs=93.5
Q ss_pred CCeEEEEEcCC----CCEEEEEECCCcEEEEeCC-----CCeEEEEecc-C--CC--CeEEEEEcCCCCEEEEEeCCCeE
Q 003236 556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLEE-H--TQ--WITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 556 ~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~-----t~~~~~~l~~-h--~~--~I~~l~fspdg~~Latgs~Dg~I 621 (837)
..|..++|.|- -..|......+.|.||-+. ..+.+..-.. . .- --..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 45889999984 3244555677899999764 2232222111 1 11 12357899998888877766666
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-----eeeEEecCCCeeEEEEecCCCE
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-----~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
.++++......++.-....+.|.|.+|.+||.+++++.+..-.-++||-.... .-..|...+.|.++.-.-+ ..
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sq 215 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQ 215 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc-ce
Confidence 67777765555555556678899999999999999888777778899865432 2234445566666655443 33
Q ss_pred EEEEE
Q 003236 697 ILAAA 701 (837)
Q Consensus 697 llags 701 (837)
+++++
T Consensus 216 VAvaT 220 (671)
T PF15390_consen 216 VAVAT 220 (671)
T ss_pred EEEEe
Confidence 44443
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.16 E-value=0.39 Score=52.29 Aligned_cols=270 Identities=9% Similarity=0.059 Sum_probs=123.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe--ccC---CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~h---~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
...+.+|.|..+..-+|+|. .+.| +-..+.++.-... ... .-...+|.|..+ ..++ ++..+. .+...+.+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g~-ll~T~DgG 90 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPGL-LLHTTDGG 90 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETTE-EEEESSTT
T ss_pred CCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCce-EEEecCCC
Confidence 44799999996666666664 4543 2222323221111 111 223667777643 3444 445553 33333333
Q ss_pred CceeEEee---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE--ecCCCeeEEEEecCCCEEEEEEcCC
Q 003236 630 DYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KCQSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 630 ~~~~~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~--~~~~~i~sl~~sp~g~~llags~dg 704 (837)
+. -..+. .-......+....++ ..++.+ ..|.|+. ....|+.=..+ .....+..+..++++.+++++....
T Consensus 91 ~t-W~~v~l~~~lpgs~~~i~~l~~~-~~~l~~-~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 91 KT-WERVPLSSKLPGSPFGITALGDG-SAELAG-DRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp SS--EE----TT-SS-EEEEEEEETT-EEEEEE-TT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CC-cEEeecCCCCCCCeeEEEEcCCC-cEEEEc-CCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 21 22211 122333344443333 233333 3444332 22223222221 2235677888888988777776666
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCC-C-ceeEEEeecCCCceEEEEEeCCCCE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS-K-GECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~-~-~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
.+.-||.-...-...-..-...|.++.|.|++.+.+++..|.|++=+..... . .+.+..+......+..++|.++...
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred EEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence 6667886543222222234678999999999998887778888887722110 0 0111112223455899999998764
Q ss_pred EEEEEcCCeEEEEECCCCcEEEec----cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 783 LLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~~l~----~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.+ ++..|.| +...+.|+.-... .-...+..|.|..+.+-+|. +.||.|--|
T Consensus 247 wa-~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 247 WA-VGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp EE-EESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred EE-EeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 44 5555544 4456666655322 23456888888766555554 578887655
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.11 E-value=0.027 Score=66.96 Aligned_cols=230 Identities=12% Similarity=0.067 Sum_probs=119.0
Q ss_pred CCCEEEEEECC------CcEEEEeCCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCce
Q 003236 566 DGKLLATGGHD------KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS 632 (837)
Q Consensus 566 dg~~Lasgs~D------g~I~VWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl~~~~~~ 632 (837)
.+.++++||.+ ..|..||..+........- +...-.++++. ++...++|+.| .++..||..++.+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34566666665 3677888777643322211 22223344444 45788888888 36778888876642
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeeEEecCCCeeEEEE-ecCCCEEEEEEcC---
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQMRF-QPRLGRILAAAIE--- 703 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~vwDl~t~~~i~~~~~~~~i~sl~~-sp~g~~llags~d--- 703 (837)
. ...-...-..+....-++.+.+.|+.|| +|-.||..+.+-...-........... .-++..+++|+.+
T Consensus 363 ~--~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 363 P--VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred c--cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 1 1111111111222222356788888886 477788877654433322222222222 2345556666644
Q ss_pred ---CeEEEEECCCCeEE--EEEcCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 704 ---NYISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 704 ---g~I~iwDl~s~~~~--~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
..+..||..+..-. .....-..... ++.. ++.++++|+ |+ +|..||..+..- ..+.........+.
T Consensus 441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRSAVG 517 (571)
T ss_pred cccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCce-eEcccCcccccccc
Confidence 35788888776432 22221111222 3332 456666666 55 478888877521 22211111111111
Q ss_pred EEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEE
Q 003236 773 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTL 803 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg-----~I~IwDl~s~~~~ 803 (837)
+..-++...++|+.|+ +|..||..+.+..
T Consensus 518 --~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 518 --VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred --EEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 1223455666777766 7888887777655
No 385
>PHA02713 hypothetical protein; Provisional
Probab=97.03 E-value=0.048 Score=64.84 Aligned_cols=218 Identities=7% Similarity=0.005 Sum_probs=106.5
Q ss_pred cEEEEeCCCCeEEE--EeccCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCCcee-EEeeccccceEEEEE
Q 003236 578 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSL-RTFTGHSTTVMSLDF 648 (837)
Q Consensus 578 ~I~VWd~~t~~~~~--~l~~h~~~I~~l~fspdg~~Latgs~D------g~I~IWDl~~~~~~~-~~~~~h~~~V~sl~f 648 (837)
.+..||..+.+... .+...... .+++. -++..++.|+.+ ..+..||..++.... .......... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 56778877654332 22111111 12222 256677777753 357788887754311 1111111111 2222
Q ss_pred cCCCCeEEEEEeCCC-----cEEEEECCCCeeeeEEecCCCeeE-EEEecCCCEEEEEEcC-------------------
Q 003236 649 HPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSGATQ-MRFQPRLGRILAAAIE------------------- 703 (837)
Q Consensus 649 spdg~~llasgs~Dg-----~I~vwDl~t~~~i~~~~~~~~i~s-l~~sp~g~~llags~d------------------- 703 (837)
. ++.+++.|+.++ .+.+||..+.+-...-........ ....-++..+++|+.+
T Consensus 350 ~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 I--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred E--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccc
Confidence 2 245767777653 488899887653332221111111 1112345555666543
Q ss_pred ----CeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe-CC------eEEEEEcCCCCCceeEEEeecCCCc
Q 003236 704 ----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 704 ----g~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg------~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
..|..||.++.+- +..+...... .+++. -++++.+.|+ ++ .|..||..+......+..+......
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 2477888876532 2222111111 12222 2456555555 32 4678888762223334333332222
Q ss_pred eEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEE
Q 003236 771 FHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLT 804 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~~ 804 (837)
...+++ ++...++||.++ .+..||..+.+...
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence 222333 667777888787 78889988887653
No 386
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.03 E-value=0.92 Score=51.60 Aligned_cols=260 Identities=14% Similarity=0.134 Sum_probs=144.5
Q ss_pred CCEEEEEECCCcEEEEeCCCCe-----EEEEeccCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCC------
Q 003236 567 GKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD------ 630 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~-----~~~~l~~h~~~I~~l~fsp-----dg~~Latgs~Dg~I~IWDl~~~~------ 630 (837)
...|++|+.+|.++||+..... .+... .-..+|..|..-. +...||+ -.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4589999999999999875432 22222 2456788877643 2234444 467788888874211
Q ss_pred --ceeEEeeccc--cceEEEEEcC----CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc
Q 003236 631 --YSLRTFTGHS--TTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 631 --~~~~~~~~h~--~~V~sl~fsp----dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~ 702 (837)
..+.....|. .....+++-| .+..+++.-+.||.+.+|+-+.......+..---...++|.+....|++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 2233333343 2333444433 2357888999999999999876554444443233456788888889999999
Q ss_pred CCeEEEEECCCC--------------------e---EEEEEcCCCCCEEE---EEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003236 703 ENYISILDVETQ--------------------V---CRLKLQGHKNQVHS---VCWNTSGEYLASVSDELVRVWSIGSGS 756 (837)
Q Consensus 703 dg~I~iwDl~s~--------------------~---~~~~l~~h~~~V~s---l~~spdg~~LasgsDg~I~IwDl~s~~ 756 (837)
+..|..|....- + +-.++. -...+.. +.++.....+++-++..+.+.+-. |
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G- 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G- 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-
Confidence 888888854210 0 011111 1122333 333334445555556666666653 2
Q ss_pred CceeEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEE---EeCCCCEEEE
Q 003236 757 KGECIHELSCTGNKFHSCVFHP----TF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA---ASTVNGMVAS 826 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fsp----dg---~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla---~spdg~~LaS 826 (837)
.......+.. .+...+.|.. ++ ..+++++.++.+.||.-.+-....... ..+| ++. |..-...|++
T Consensus 272 ~l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~-~~PV-al~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 272 SLRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP-HVPV-ALSVANFNGLKGLIVS 347 (418)
T ss_pred eEEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC-CCCE-EEEecccCCCCceEEE
Confidence 2233333322 2222222221 22 248899999999999633322221111 1222 333 2233568888
Q ss_pred EECCCcEEE
Q 003236 827 ASHDKCVKI 835 (837)
Q Consensus 827 gs~DG~I~I 835 (837)
-+.||.|.+
T Consensus 348 Ls~~G~L~v 356 (418)
T PF14727_consen 348 LSDEGQLSV 356 (418)
T ss_pred EcCCCcEEE
Confidence 888998865
No 387
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.01 E-value=0.001 Score=46.92 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhcCCC
Q 003236 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (837)
Q Consensus 9 ~~~l~~yiydyl~k~~~~~~A~~~~~e~~~~ 39 (837)
+..|+..|++||.++|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999998765
No 388
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.00 E-value=0.023 Score=51.67 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=67.6
Q ss_pred eEEEEEcC---CC-CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 558 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 558 V~sl~fSp---dg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
|+++++.. || ..|++|+.|..|+||+-+ ..+..+.. .+.|++++-... ..++.+..+|+|-+|+-....+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlW-- 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLW-- 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcceee--
Confidence 56666654 43 479999999999999854 56666653 456778777665 6799999999999998754322
Q ss_pred EEeeccccceEEEEEc---CCCCeEEEEEeCCCcEE
Q 003236 634 RTFTGHSTTVMSLDFH---PSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fs---pdg~~llasgs~Dg~I~ 666 (837)
..+ ....+.++++. -+|..-|++|-.+|.|-
T Consensus 76 -RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 -RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 222 22235555543 34445566777788764
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.98 E-value=0.031 Score=66.39 Aligned_cols=207 Identities=10% Similarity=0.027 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeeEEecCCCeeEEE-Eec
Q 003236 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSGATQMR-FQP 692 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~i~sl~-~sp 692 (837)
.+..||..++......-........++++.. +.++++|+.| ..+..||..+.+-...-.....-.... ..-
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 5677777765432222222333344555553 4677788888 367888888776433222212111111 122
Q ss_pred CCCEEEEEEcCC-----eEEEEECCCCeEEEEEcCCCCCEEEEE-EcCCCCEEEEEe-CC------eEEEEEcCCCCCce
Q 003236 693 RLGRILAAAIEN-----YISILDVETQVCRLKLQGHKNQVHSVC-WNTSGEYLASVS-DE------LVRVWSIGSGSKGE 759 (837)
Q Consensus 693 ~g~~llags~dg-----~I~iwDl~s~~~~~~l~~h~~~V~sl~-~spdg~~Lasgs-Dg------~I~IwDl~s~~~~~ 759 (837)
+|...++|+.|| .|..||.++.+-...-. ......+.. ..-+|.+.++|+ ++ .+..||..++. ..
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT-WT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc-ee
Confidence 456667777775 57888887653221111 111222211 122566666666 43 57888887652 11
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEeccCCCCeeEEEE-eCCCCEEEEEECCCc
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAA-STVNGMVASASHDKC 832 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-----~I~IwDl~s~~~~~l~~h~~~V~sla~-spdg~~LaSgs~DG~ 832 (837)
.+........... +..-++...++||.|+ +|..||..+.+...+..-......+.. .-++.+.++|+.||.
T Consensus 458 ~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 458 LIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred ecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence 2222211111111 2233455666666665 588999998887755433222222211 224677888888864
No 390
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.97 E-value=0.2 Score=53.37 Aligned_cols=189 Identities=8% Similarity=0.019 Sum_probs=108.0
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEE-CCCCeE-EEE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD-VETQVC-RLK 719 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwD-l~s~~~-~~~ 719 (837)
.+.+.++++++..+++....++.-.+|-...+...........+..-.|++++...++...+....++. ...+.. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 688999999998777766333333334333333333332445788889999966666666566666663 333322 122
Q ss_pred EcC--CCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003236 720 LQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 720 l~~--h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~sv~fspdg~~L~sgs 787 (837)
+.. -...|+.+.++|||..++... ++.|.|--+...... ..+.........+..+.|.+++..++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 112899999999999888766 567777765432221 11222223356789999999998777666
Q ss_pred cCC-eEEE-EECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 788 CYE-TLEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 788 ~dg-~I~I-wDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
..+ .+.. +....+....+..-...+..++...+...++..+.+
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~~~ 229 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTDDG 229 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEECCC
Confidence 554 2333 444444433332333333344444444444444333
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.94 E-value=1 Score=50.67 Aligned_cols=220 Identities=9% Similarity=0.057 Sum_probs=105.8
Q ss_pred CCCEEEEEe-CCCeEEEEEcCCCCc---eeEEeec---cc----cceEEEEEcCCCCeEEEEE--e----CCCcEEEEEC
Q 003236 608 SLSRLATSS-ADRTVRVWDTENPDY---SLRTFTG---HS----TTVMSLDFHPSKEDLLCSC--D----NNSEIRYWSI 670 (837)
Q Consensus 608 dg~~Latgs-~Dg~I~IWDl~~~~~---~~~~~~~---h~----~~V~sl~fspdg~~llasg--s----~Dg~I~vwDl 670 (837)
+.++|+..+ ..+.|+|+|+.+.-. ..+++.. +. .....+..-|+|..++ ++ + .-|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 456777766 678999999984321 1222222 11 2223444557766444 43 2 2356888998
Q ss_pred CCCeeeeEEecCCC----eeEEEEecCCCEEEEEEc--------------------CCeEEEEECCCCeEEEEEcCCCC-
Q 003236 671 NNGSCAGVFKCQSG----ATQMRFQPRLGRILAAAI--------------------ENYISILDVETQVCRLKLQGHKN- 725 (837)
Q Consensus 671 ~t~~~i~~~~~~~~----i~sl~~sp~g~~llags~--------------------dg~I~iwDl~s~~~~~~l~~h~~- 725 (837)
++.+.......... -..+-|.|..+.+++... ...+.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 88888777765332 456778888888777643 34799999999999988875332
Q ss_pred -CEEEEEEc--CCCCEEEEEe--CCeEEEEEcCCCCCc--eeEEEeecC-----------------CCceEEEEEeCCCC
Q 003236 726 -QVHSVCWN--TSGEYLASVS--DELVRVWSIGSGSKG--ECIHELSCT-----------------GNKFHSCVFHPTFP 781 (837)
Q Consensus 726 -~V~sl~~s--pdg~~Lasgs--Dg~I~IwDl~s~~~~--~~i~~~~~~-----------------~~~I~sv~fspdg~ 781 (837)
.+..|.|. |+..+=+++. ...|..|--...... +.+..+... ..-|+.|.+|.|.+
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 34566664 4555544444 555555544222211 122222111 24479999999999
Q ss_pred EEEEEEc-CCeEEEEECCCCcE---E-E-ecc---------------CCCCeeEEEEeCCCCEEEEEE
Q 003236 782 SLLVIGC-YETLELWNMTENKT---L-T-LSA---------------HDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 782 ~L~sgs~-dg~I~IwDl~s~~~---~-~-l~~---------------h~~~V~sla~spdg~~LaSgs 828 (837)
+|++++. .|.|+.||+.+-.. + . ..+ -.+...-|..|-||+.|+..+
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998886 67999999977432 2 1 111 112346678889998777654
No 392
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.94 E-value=0.0021 Score=44.58 Aligned_cols=37 Identities=38% Similarity=0.592 Sum_probs=33.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
.+..+..|...|.++.|++++.++++++.|+.|++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.91 E-value=0.14 Score=54.26 Aligned_cols=164 Identities=12% Similarity=0.192 Sum_probs=102.7
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
+.+-...|.++.|+|+.+.++++... ..-.||=...|..++++... .....+.+..++.++++--.+..++++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~-p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNK-PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCC-CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 34455669999999998888866654 44445555568888888753 3456788887777666666788888887765
Q ss_pred CeEEEE-------Ec--CC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEE
Q 003236 714 QVCRLK-------LQ--GH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCV 775 (837)
Q Consensus 714 ~~~~~~-------l~--~h-~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~sv~ 775 (837)
...+.. +. .+ ......++|+|....|+.+. .+-+.||.+......-.++....+ -..+.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 422211 11 12 55678999999998888888 445555555433211112111111 23467778
Q ss_pred EeCCCCEEEEEEc-CCeEEEEECCCC
Q 003236 776 FHPTFPSLLVIGC-YETLELWNMTEN 800 (837)
Q Consensus 776 fspdg~~L~sgs~-dg~I~IwDl~s~ 800 (837)
|++....+++-+. ++.|.-.|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 8876655555554 456666776554
No 394
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.86 E-value=0.9 Score=50.36 Aligned_cols=232 Identities=14% Similarity=0.158 Sum_probs=119.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE---EEEe----ccCCCCeEEEEEcCC---CCEEEEEeCC---------
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL----EEHTQWITDVRFSPS---LSRLATSSAD--------- 618 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~---~~~l----~~h~~~I~~l~fspd---g~~Latgs~D--------- 618 (837)
-+.|+|.|||++|++ ...|.|++++ ..+.. +..+ .........++|+|+ ..+|++....
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 578999999987765 5699999999 44443 2222 234457899999994 3344443331
Q ss_pred CeEEEEEcCCCC-------ceeEEeec---cccceEEEEEcCCCCeEEEEEeCC------------CcEEEEECCCCee-
Q 003236 619 RTVRVWDTENPD-------YSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNN------------SEIRYWSINNGSC- 675 (837)
Q Consensus 619 g~I~IWDl~~~~-------~~~~~~~~---h~~~V~sl~fspdg~~llasgs~D------------g~I~vwDl~t~~~- 675 (837)
..|.-|.+.... ..+..+.. .......|.|.|++..++.+|+.. |.|.-.+.. ++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence 245555554431 11122222 233456799999985444444321 233333322 110
Q ss_pred ------------eeEEe-cCCCeeEEEEecCCCEEEEEEcC--C--eEEEEECC--------C------C----------
Q 003236 676 ------------AGVFK-CQSGATQMRFQPRLGRILAAAIE--N--YISILDVE--------T------Q---------- 714 (837)
Q Consensus 676 ------------i~~~~-~~~~i~sl~~sp~g~~llags~d--g--~I~iwDl~--------s------~---------- 714 (837)
...+. .......++|+|..+.|+++... + .|.+..-. . +
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 01111 12235678999985666655432 2 23332110 0 0
Q ss_pred ---eEEEEEcCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCceeEEE-eecCCCceEEEEEeCCCCE
Q 003236 715 ---VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 715 ---~~~~~l~~h~~~V~sl~~sp-------dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~-~~~~~~~I~sv~fspdg~~ 782 (837)
.++..+..| ..+..+.|.. .+.+|++.. .+.|....+........... +......+..+++.|||..
T Consensus 241 ~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 241 GFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 123334433 5566777754 345666555 66888888865422122222 2334457999999999987
Q ss_pred EEEEEcCCeEE
Q 003236 783 LLVIGCYETLE 793 (837)
Q Consensus 783 L~sgs~dg~I~ 793 (837)
.++...+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 77777777764
No 395
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.025 Score=63.59 Aligned_cols=142 Identities=17% Similarity=0.203 Sum_probs=101.7
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE-------EEEEEcCCeEEEEECCCC-e-EEEEEc
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR-------ILAAAIENYISILDVETQ-V-CRLKLQ 721 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~-------llags~dg~I~iwDl~s~-~-~~~~l~ 721 (837)
+.+.++.++.....|+-.|++.|+.+.....+..|+-+.+.|+.+. -++|-.++.|.-||.+-. . .+....
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3455666677777899999999999999999888999999987543 466778899999998843 2 222222
Q ss_pred CC----CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 722 GH----KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 722 ~h----~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
+| .....|++-..+| +|++|+ +|.|++||- .+. .....+++.+.+|..+..+.+|++|++. ++..|.+.+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~--~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~ 498 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGR--RAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLID 498 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhh--hhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEE
Confidence 22 2345666665555 555666 999999997 332 3344577788999999999999976654 455666666
Q ss_pred C
Q 003236 797 M 797 (837)
Q Consensus 797 l 797 (837)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
No 396
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.85 E-value=0.0032 Score=43.62 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=34.4
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
++.+..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778899999999999999999999999999996
No 397
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.77 E-value=2.2 Score=51.96 Aligned_cols=286 Identities=13% Similarity=0.007 Sum_probs=148.2
Q ss_pred ccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-C---CCEEE
Q 003236 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-D---GKLLA 571 (837)
Q Consensus 496 ~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-d---g~~La 571 (837)
.++...-.-++.++..||.-++-.+.......+.. ......+. + ..-++|..++.-. + +.-++
T Consensus 307 siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~g-sy~~ilet-----------~-~NLgPI~Dm~Vvd~d~q~q~qiv 373 (1096)
T KOG1897|consen 307 SIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDVG-SYVVILET-----------F-VNLGPIVDMCVVDLDRQGQGQIV 373 (1096)
T ss_pred chhhhhhcccCceEEEeccCCceeeEEccccCCCC-chhhhhhh-----------c-ccccceeeEEEEeccccCCceEE
Confidence 33333334456788888887776665443333221 11111110 1 1234677766544 2 22455
Q ss_pred EEE---CCCcEEEEeCCCC-e--EEEEeccCCCCeEEEE--EcCC-CCEEEEEeCCCeEEEEEcCCCCceeEEeeccccc
Q 003236 572 TGG---HDKKAVLWCTESF-T--VKSTLEEHTQWITDVR--FSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (837)
Q Consensus 572 sgs---~Dg~I~VWd~~t~-~--~~~~l~~h~~~I~~l~--fspd-g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~ 642 (837)
|++ .||+++|..-.=+ . ....+.+ -..++.+. ++++ ..+|+.+ .-+.-++..+... .......+....
T Consensus 374 tCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvls-f~~eTrvl~i~~e-~ee~~~~gf~~~ 450 (1096)
T KOG1897|consen 374 TCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLS-FISETRVLNISEE-VEETEDPGFSTD 450 (1096)
T ss_pred EEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEE-eccceEEEEEccc-eEEecccccccc
Confidence 543 5889999863321 1 1223344 34567777 4442 2355554 3344566666542 223333333344
Q ss_pred eEEEEEcCC-CCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE-E
Q 003236 643 VMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK-L 720 (837)
Q Consensus 643 V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~-l 720 (837)
...+..+-- ++.++ =.. ...|++++-. ..+..+.....++....+.+...++.++.++.+...++..+..... -
T Consensus 451 ~~Tif~S~i~g~~lv-QvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~ 526 (1096)
T KOG1897|consen 451 EQTIFCSTINGNQLV-QVT-SNSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH 526 (1096)
T ss_pred CceEEEEccCCceEE-EEe-cccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee
Confidence 444444322 22222 222 3457777655 2333444456666666666666788888888888888776652211 1
Q ss_pred cCCCCCEEEEEEcCCC------CEEEEEe-CCeE-EEEEcCCCCCceeEEEee--cCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 721 QGHKNQVHSVCWNTSG------EYLASVS-DELV-RVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg------~~Lasgs-Dg~I-~IwDl~s~~~~~~i~~~~--~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
...+..|.|+.++|-| .++++|. +..+ .+.-+.+.. ..+...+. .-...|.-..|-.|..+|+++..||
T Consensus 527 ~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~-~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG 605 (1096)
T KOG1897|consen 527 KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI-LITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDG 605 (1096)
T ss_pred heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc-eeeeeccCCCccchheeeEEeeccceEEEEEcCCc
Confidence 2245689999999742 2677777 5543 333333321 01111111 1233455566777788999999999
Q ss_pred eEEEE--ECCCCcE
Q 003236 791 TLELW--NMTENKT 802 (837)
Q Consensus 791 ~I~Iw--Dl~s~~~ 802 (837)
.+.-| |..++..
T Consensus 606 ~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 606 ALLYFVLDINTGQL 619 (1096)
T ss_pred eEEEEEEEcccceE
Confidence 77655 5555543
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.75 E-value=1 Score=47.76 Aligned_cols=180 Identities=9% Similarity=0.014 Sum_probs=107.4
Q ss_pred cceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeeEEecCCCee--EEEEecCCCEEEEEE-cCCeEEEEECCCCe
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGAT--QMRFQPRLGRILAAA-IENYISILDVETQV 715 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~--sl~~sp~g~~llags-~dg~I~iwDl~s~~ 715 (837)
.....+.|..++ .++-+.+.-| .|+.+|+.+++.......+.... .++.. ++.|+.-+ .++...+||..+.+
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 445678886554 4666766555 79999999999888877655433 34444 34555554 47899999999998
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC---CceEEEEEeCCCCEEEEEEcCCe
Q 003236 716 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---NKFHSCVFHPTFPSLLVIGCYET 791 (837)
Q Consensus 716 ~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---~~I~sv~fspdg~~L~sgs~dg~ 791 (837)
.+.++. ....=..++ .|+..|+.+. ...|+++|..+......+... ..+ ..++.+.|. +|...+=.-....
T Consensus 122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 122 KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEE-ECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 888876 345556676 3455555444 778999998776432322222 122 234556665 4443333334558
Q ss_pred EEEEECCCCcEEEec-------------cC---CCCeeEEEEeCCCCEEEEEE
Q 003236 792 LELWNMTENKTLTLS-------------AH---DKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 792 I~IwDl~s~~~~~l~-------------~h---~~~V~sla~spdg~~LaSgs 828 (837)
|...|..+|+++... .+ ....+.||+.|..+.|...+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 888999999887321 01 35689999998876555444
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.12 Score=54.38 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=113.9
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEE-EEcCC-eEEEEECCCCeEEEEEcCCCC-
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILA-AAIEN-YISILDVETQVCRLKLQGHKN- 725 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~lla-gs~dg-~I~iwDl~s~~~~~~l~~h~~- 725 (837)
.+|+.+.+++.+.+ |+++...........++++|....-++ +-.-| ...+||........++...+.
T Consensus 44 ~~dgs~g~a~~~ea----------Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R 113 (366)
T COG3490 44 ARDGSFGAATLSEA----------GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR 113 (366)
T ss_pred ccCCceeEEEEccC----------CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc
Confidence 34555555555444 566666666677788888887655443 43444 567889887755544432221
Q ss_pred -CEEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---------
Q 003236 726 -QVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--------- 789 (837)
Q Consensus 726 -~V~sl~~spdg~~Lasgs------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d--------- 789 (837)
..-.-+|++||.+|+... -|.|-|||.+.+ ...+-++..++-.-..+.+.+||+.++++...
T Consensus 114 HfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR 191 (366)
T COG3490 114 HFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGR 191 (366)
T ss_pred eeecccccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCc
Confidence 112347999999999875 248999999854 36777888888888999999999988887541
Q ss_pred ---------CeEEEEECCCCcEE---Eec--cCCCCeeEEEEeCCCCEEEEEECC
Q 003236 790 ---------ETLELWNMTENKTL---TLS--AHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 790 ---------g~I~IwDl~s~~~~---~l~--~h~~~V~sla~spdg~~LaSgs~D 830 (837)
-.+.+.|..++.++ ++. .+...|..++..+||..++.|-..
T Consensus 192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~ 246 (366)
T COG3490 192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR 246 (366)
T ss_pred cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence 14555665666655 232 455678899999998877766443
No 400
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.73 E-value=0.3 Score=55.34 Aligned_cols=88 Identities=23% Similarity=0.357 Sum_probs=55.2
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EeCC-----CCeEEEEec---cCC--CCeEEEEEcC-----------CCCEEEEE
Q 003236 560 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKSTLE---EHT--QWITDVRFSP-----------SLSRLATS 615 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~V---Wd~~-----t~~~~~~l~---~h~--~~I~~l~fsp-----------dg~~Latg 615 (837)
+++.+|++++||.+..+..|.+ |+.. ......... .+. +.|+++.|-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4788999999999987776655 5331 112222211 122 5677777643 45789999
Q ss_pred eCCCeEEEEEcCCCCceeEEeeccccceEEEEEc
Q 003236 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs 649 (837)
..+|.|++|.... .. +..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~G-~L-L~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTENG-VL-LLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEeccc-hH-HHHHhcCccceEEEEec
Confidence 9999999998753 32 32223356666666654
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.4 Score=50.87 Aligned_cols=163 Identities=12% Similarity=0.154 Sum_probs=106.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
+.+-...|.++.|+|+.+.|++......-.||=...|..+.++.- .-.....|.|..++.++++--.+..+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344455599999999999998888888888887788899887742 1223456778878888888777899999888755
Q ss_pred Ccee---------EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eee--EEec--------CCCeeEEE
Q 003236 630 DYSL---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAG--VFKC--------QSGATQMR 689 (837)
Q Consensus 630 ~~~~---------~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~--~~~~--------~~~i~sl~ 689 (837)
...+ ......+.....++|+|....+++ +-+..-+.||.+.... .+. .... -..+.++.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 3221 111222556789999999876664 4445556666555322 111 0000 13466788
Q ss_pred EecCCCEEEEEE-cCCeEEEEECCCC
Q 003236 690 FQPRLGRILAAA-IENYISILDVETQ 714 (837)
Q Consensus 690 ~sp~g~~llags-~dg~I~iwDl~s~ 714 (837)
|.+..+.+++-+ +++.+...|....
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC
Confidence 887666655544 5567777776643
No 402
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.68 E-value=1.6 Score=49.12 Aligned_cols=194 Identities=10% Similarity=0.053 Sum_probs=106.9
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEeccC--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccc-c
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-T 641 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h--~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~-~ 641 (837)
-|| .++++..||.|.-+|.++++.+.....- ...+.+-.+..+|+ |+.++.++.++.+|..++.. +..+.... .
T Consensus 67 ~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~~ 143 (370)
T COG1520 67 GDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGSP 143 (370)
T ss_pred eCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCCe
Confidence 355 4444577888888888888866433222 12333333333665 88888899899999977664 33333333 1
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCe-eEEE--EecCCCEEEEEEc--CCeEEEEECCCCeE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQMR--FQPRLGRILAAAI--ENYISILDVETQVC 716 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i-~sl~--~sp~g~~llags~--dg~I~iwDl~s~~~ 716 (837)
.+..-....++ .++.++.++.+...|..+++....+.....+ ..+. .......++.+.. ++.+.-+|.+++..
T Consensus 144 ~~~~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 144 YYASPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EEecCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcE
Confidence 12222222232 3434446899999999999988776653320 0111 1123345666655 66788888888877
Q ss_pred EEEEcCCC----CCE------EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec
Q 003236 717 RLKLQGHK----NQV------HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 717 ~~~l~~h~----~~V------~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
....+.+. ..+ ..-...-++..++...++.+...|..++ +.+..+..
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G---~~~W~~~~ 278 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG---ELIWSFPA 278 (370)
T ss_pred eeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC---ceEEEEec
Confidence 76643111 111 0001111233333333777888888877 44444443
No 403
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.96 Score=47.98 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=115.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec-cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~ 674 (837)
-.+.+.++.++. .+.+.+.++.-++|+|+.++..+...-.- ..+.-.++..+ |+ +++.+..|..+.+.|+.+..
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn-~aYVadlddgfLivdvsdps 159 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GN-YAYVADLDDGFLIVDVSDPS 159 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CC-EEEEeeccCcEEEEECCCCC
Confidence 445677888864 57888888888999999987764433222 22444555555 44 55566656667788887643
Q ss_pred ---eeeEEecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeE---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 003236 675 ---CAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELV 747 (837)
Q Consensus 675 ---~i~~~~~~~~-i~sl~~sp~g~~llags~dg~I~iwDl~s~~~---~~~l~~h~~~V~sl~~spdg~~LasgsDg~I 747 (837)
....+...+. ...++++ |++.+.++.|+.+.+.|+..... +.... ....+.++..+++..+++....| +
T Consensus 160 sP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy~eg-v 235 (370)
T COG5276 160 SPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVYDEG-V 235 (370)
T ss_pred CceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEcccc-e
Confidence 2233333222 3455555 56788888999999999986532 22221 23367888887776666655454 6
Q ss_pred EEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 748 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 748 ~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
.+-|..+.+....+-..+. .+.+..-.+.-.+++.++...+..+-+.|+.+.
T Consensus 236 livd~s~~ssp~~~gsyet-~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 236 LIVDVSGPSSPTVFGSYET-SNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EEEecCCCCCceEeecccc-CCcccccceecccceeeeeccccCceeEeccCC
Confidence 6777776643333333322 222222133444556666666666666666543
No 404
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.65 E-value=1.7 Score=49.23 Aligned_cols=147 Identities=11% Similarity=0.066 Sum_probs=83.1
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCce--eEEE
Q 003236 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIHE 763 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~--~i~~ 763 (837)
..+...+++..++++.....++-||-....-...-......+.++.|.+++.+++++.+|.+.+ ....+.... .+..
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~ 320 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEE 320 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceee
Confidence 3445566655555444433333344322110111122345788999999999998887776544 333332111 2222
Q ss_pred eec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 764 LSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 764 ~~~--~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l----~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
... ....+..+.|.+++. +++++..|.|... ...++.... ..-...++.+.|.++++.+++| .+|.|.-|
T Consensus 321 ~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 321 ADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred cccCCCCcceEEEEEcCCCc-EEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 222 224588899998776 6666777766555 455554422 2334568899998776666654 77887665
No 405
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0074 Score=69.05 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceE-EEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~-sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 675 (837)
.-.|.-+.|+|.-.+||++..+|.|.++.+.- ..+.++.-|...++ +++|.|||+ +++.|-.||+|++.|+.++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCCc
Confidence 34578899999999999999999999998883 34677776777777 999999966 788999999999999999988
Q ss_pred eeE--EecCCCeeEEEEec
Q 003236 676 AGV--FKCQSGATQMRFQP 692 (837)
Q Consensus 676 i~~--~~~~~~i~sl~~sp 692 (837)
+.. +.....|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 877 55567788888864
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.56 E-value=0.0024 Score=64.77 Aligned_cols=140 Identities=14% Similarity=0.061 Sum_probs=81.3
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee-EEe-cCCCeeEE
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFK-CQSGATQM 688 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~-~~~-~~~~i~sl 688 (837)
.|..-+.||.|+-+++...+...+....|...-.-+.+ ..-+++|+.+|.|++|...-..... .+. ....|.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~----~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA----SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeeccc----CceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence 34455678888888877544333332223222111222 2235578889999999887321111 111 11223322
Q ss_pred -EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-CCEEEEEEcCCCCEEEEE--e-CCeEEEEEcCC
Q 003236 689 -RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGS 754 (837)
Q Consensus 689 -~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~-~~V~sl~~spdg~~Lasg--s-Dg~I~IwDl~s 754 (837)
....++.+..+++.+|.|+.|++.-.+.+-....|. .++..+..+..+++|+++ + |..++.|++..
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 223345577888999999999999888777766676 455555555555556555 4 66666676654
No 407
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.54 E-value=1 Score=49.88 Aligned_cols=232 Identities=11% Similarity=0.122 Sum_probs=117.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEe----eccccceEEEEEcCC---CCeEEEEEeCC--------
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF----TGHSTTVMSLDFHPS---KEDLLCSCDNN-------- 662 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~~~~~~----~~h~~~V~sl~fspd---g~~llasgs~D-------- 662 (837)
..+.|+|.||+++|++ ...|.|++++..... ..+..+ .........++++|+ +..++++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3578999999877665 569999999933221 122222 233467899999994 23344333321
Q ss_pred CcEEEEECCCC--e-----ee-eEEec----CCCeeEEEEecCCCEEEEEEcCC-------------eEEEEECCCCe--
Q 003236 663 SEIRYWSINNG--S-----CA-GVFKC----QSGATQMRFQPRLGRILAAAIEN-------------YISILDVETQV-- 715 (837)
Q Consensus 663 g~I~vwDl~t~--~-----~i-~~~~~----~~~i~sl~~sp~g~~llags~dg-------------~I~iwDl~s~~-- 715 (837)
..|.-|....+ . .+ ..... ......+.|.|++..+++.+..+ .|.-++.....
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 24544554433 1 11 11111 23356799999986555554422 33333332110
Q ss_pred ------------EEEEEcCCCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEcCCCCC-----------------------
Q 003236 716 ------------CRLKLQGHKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK----------------------- 757 (837)
Q Consensus 716 ------------~~~~l~~h~~~V~sl~~spd-g~~Lasgs--Dg~I~IwDl~s~~~----------------------- 757 (837)
.+. -.++. ....++|+|. |.++++-. |..=.|.-+..+..
T Consensus 162 dnP~~~~~~~~~~i~-A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 162 DNPFVGDDGADSEIY-AYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TSTTTTSTTSTTTEE-EE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCccccCCCceEEEE-EeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 000 01122 3457899998 76666533 43222322322210
Q ss_pred ---ceeEEEeecCCCceEEEEEeCC-------CCEEEEEEcCCeEEEEECCCCcEE----Ee-ccCCCCeeEEEEeCCCC
Q 003236 758 ---GECIHELSCTGNKFHSCVFHPT-------FPSLLVIGCYETLELWNMTENKTL----TL-SAHDKLVSSLAASTVNG 822 (837)
Q Consensus 758 ---~~~i~~~~~~~~~I~sv~fspd-------g~~L~sgs~dg~I~IwDl~s~~~~----~l-~~h~~~V~sla~spdg~ 822 (837)
..++..+.. ...+..+.|... +.+|++.-..+.|....++.+..+ .+ ......+..|++.|||.
T Consensus 240 ~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 012222222 244566666543 333444444558888888755333 22 23445899999999999
Q ss_pred EEEEEECCCcEE
Q 003236 823 MVASASHDKCVK 834 (837)
Q Consensus 823 ~LaSgs~DG~I~ 834 (837)
++++.+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 999988899874
No 408
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.53 E-value=0.25 Score=50.55 Aligned_cols=136 Identities=12% Similarity=0.116 Sum_probs=91.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeC---------CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEE
Q 003236 597 TQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~---------Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~v 667 (837)
+...++-..+|+|++++-.-. .|.++.|-.... +..+...-.--+.++|+.+.+.+.++-+.+-+|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 445667778899998432222 245555554431 22222233444678999888888888888889988
Q ss_pred EE--CCCCe-----eeeEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCC
Q 003236 668 WS--INNGS-----CAGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 735 (837)
Q Consensus 668 wD--l~t~~-----~i~~~~~-----~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spd 735 (837)
|| ..+|. .+..++. +-....+++..+|+.++++-..++|..+|..+++.+.+++-....|+|+||--.
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 87 44543 2322222 111334566667788888888899999999999999999988999999999643
No 409
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.47 E-value=0.49 Score=51.47 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=81.7
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC-C
Q 003236 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI-N 671 (837)
Q Consensus 593 l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl-~ 671 (837)
...-.+.+..+..++||+++++++......-||--....... .......|..+.|.|++...+ ....|.|++=+. .
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~-~r~~~~riq~~gf~~~~~lw~--~~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPH-NRNSSRRIQSMGFSPDGNLWM--LARGGQIQFSDDPD 216 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEE-E--SSS-EEEEEE-TTS-EEE--EETTTEEEEEE-TT
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEE-ccCccceehhceecCCCCEEE--EeCCcEEEEccCCC
Confidence 345557899999999999999987777777888764333222 223457899999999966333 336888888772 2
Q ss_pred CCeeeeE----E-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEcCCCCEEEEEe
Q 003236 672 NGSCAGV----F-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 672 t~~~i~~----~-~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l---~~h~~~V~sl~~spdg~~Lasgs 743 (837)
..+.-.. + ...-.+..++|.+++. +.+++..|.+. +....++.-... ..-...++.|.|.++.+-++.|.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS--EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred CccccccccCCcccCceeeEEEEecCCCC-EEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 2221111 1 1123478899998855 44555555443 334444332222 23355788999988888888898
Q ss_pred CCeEEEE
Q 003236 744 DELVRVW 750 (837)
Q Consensus 744 Dg~I~Iw 750 (837)
+|.|--|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 9977655
No 410
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.45 E-value=1.5 Score=48.95 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=116.7
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC----CCCE--EEEEeC-C---CeEEEEEcCCCCceeE
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--LATSSA-D---RTVRVWDTENPDYSLR 634 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp----dg~~--Latgs~-D---g~I~IWDl~~~~~~~~ 634 (837)
|...+++....++-+.+||+.. +.+..+. .+.++.+.... .++. |+.++. + .+|++|.+......+.
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 3455777778888999999875 4555553 23444443321 2332 444443 2 4799998874333343
Q ss_pred Eeec-------cccceEEEEEc--C-CCCeEEEEEeCCCcEEEEECC---CC----eeeeEEecCCCeeEEEEecCCCEE
Q 003236 635 TFTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 635 ~~~~-------h~~~V~sl~fs--p-dg~~llasgs~Dg~I~vwDl~---t~----~~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
.+.. ....++.+|+. + ++..+++....+|.+.-|.+. .+ +.++.|...+.+..|........|
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 3321 12346777764 3 456677778889988888764 23 467888888899999999999999
Q ss_pred EEEEcCCeEEEEECCC-----CeEEEEEcC--CCCCEEEEEEcC--CC-CEEEEEe--CCeEEEEEcCCC
Q 003236 698 LAAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SG-EYLASVS--DELVRVWSIGSG 755 (837)
Q Consensus 698 lags~dg~I~iwDl~s-----~~~~~~l~~--h~~~V~sl~~sp--dg-~~Lasgs--Dg~I~IwDl~s~ 755 (837)
+++-++--|.-|+.+- +..+....+ ....|..|++-. ++ .||++++ +++..||+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999999998862 233333322 345788887753 43 3666666 889999998764
No 411
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.44 E-value=0.78 Score=56.30 Aligned_cols=225 Identities=10% Similarity=0.051 Sum_probs=113.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC--------eEEEEEcC----------------CCCEEEEEeCCCeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR 622 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~--------I~~l~fsp----------------dg~~Latgs~Dg~I~ 622 (837)
+..|++++.++.|+-.|..+++.+-.+...... +..+.+.. ++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446667777888989999998888776432211 11233321 345788899999999
Q ss_pred EEEcCCCCceeEEeeccccceE-------------EEEEcC--CCCeEEEEEe----------CCCcEEEEECCCCeeee
Q 003236 623 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCD----------NNSEIRYWSINNGSCAG 677 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~-------------sl~fsp--dg~~llasgs----------~Dg~I~vwDl~t~~~i~ 677 (837)
-.|.++++.+. .+. ..+.|. .+.-.| .++.++ .++ .+|.|+-+|+++|+.+.
T Consensus 274 ALDA~TGk~~W-~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCE-DFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEE-Eec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 99999987643 221 111110 011111 123334 443 26889999999999999
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCC-eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 678 VFKCQSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 678 ~~~~~~~i~sl~~sp~g~~llags~dg-~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
.+........- ..+.+.....++... ...-||.+.+....-. +... ..+....+...... .+.|.-.|.+++
T Consensus 351 ~~~~g~p~~~~-~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~----pd~~g~~r~~~~n~y~~slvALD~~TG 424 (764)
T TIGR03074 351 AWDPGNPDPTA-PPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQT----PDQWGGDRTPADEKYSSSLVALDATTG 424 (764)
T ss_pred EEecCCCCccc-CCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCcc----ccccCCccccCcccccceEEEEeCCCC
Confidence 88753221110 011222222122111 3444555554332211 1110 00100000000001 345556666665
Q ss_pred CCceeEEEeecCCCc---------eEEEEEeC-CC---CEEEEEEcCCeEEEEECCCCcEE
Q 003236 756 SKGECIHELSCTGNK---------FHSCVFHP-TF---PSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~---------I~sv~fsp-dg---~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+ ..-.+...... ..-+.+.. +| +.++.++.+|.++++|.++++.+
T Consensus 425 k---~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 425 K---ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred c---eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence 2 22222211111 11112222 45 27888999999999999999877
No 412
>PHA02713 hypothetical protein; Provisional
Probab=96.34 E-value=0.23 Score=59.07 Aligned_cols=177 Identities=7% Similarity=-0.049 Sum_probs=86.0
Q ss_pred CeEEEEEeCC------CcEEEEECCCCeeeeEEecCCC-eeEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEE--E
Q 003236 653 EDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCR--L 718 (837)
Q Consensus 653 ~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~-i~sl~~sp~g~~llags~dg-----~I~iwDl~s~~~~--~ 718 (837)
+.+++.|+.+ ..+..||+.+..-...-....+ .......-++..+++|+.++ .+..||..+.+-. .
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~ 383 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP 383 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence 4566677643 3477889887653322111111 11122233456666676643 5888998865322 1
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe-CC-----------------------eEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 719 KLQGHKNQVHSVCWNTSGEYLASVS-DE-----------------------LVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 719 ~l~~h~~~V~sl~~spdg~~Lasgs-Dg-----------------------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
.+.........+. -++++.+.|+ ++ .|..||..+.. ...+..+.. ......
T Consensus 384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~~--~r~~~~ 458 (557)
T PHA02713 384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFWT--GTIRPG 458 (557)
T ss_pred CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCCc--ccccCc
Confidence 2111111111222 2566666665 42 46677776541 111111111 111112
Q ss_pred EEeCCCCEEEEEEcC------CeEEEEECCC-CcEEEec---cCCCCeeEEEEeCCCCEEEEEECCC--cEEEe
Q 003236 775 VFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTLS---AHDKLVSSLAASTVNGMVASASHDK--CVKIW 836 (837)
Q Consensus 775 ~fspdg~~L~sgs~d------g~I~IwDl~s-~~~~~l~---~h~~~V~sla~spdg~~LaSgs~DG--~I~IW 836 (837)
+..-++...++||.+ ..|..||..+ .+..... ........+. -++++.++|+.|| .+-.|
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhc
Confidence 223345555556543 2478899987 5554222 1222222222 3688899999888 44444
No 413
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.31 E-value=1.4 Score=47.21 Aligned_cols=197 Identities=14% Similarity=0.144 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCC-------CCeEEEEecc-----CCCCeEEEEEcCCCC------------EEE
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA 613 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-------t~~~~~~l~~-----h~~~I~~l~fspdg~------------~La 613 (837)
-+.|+|+|.+.+-++....+...+||.. ...++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999999887877778899999986 1223344432 234677888875322 367
Q ss_pred EEeCCCeEEEEEcCCCCc----eeEEee-ccccce-EEEEEcC--CCCeEEEEEeCCCcEEEEECCCCeeee--EEecC-
Q 003236 614 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQ- 682 (837)
Q Consensus 614 tgs~Dg~I~IWDl~~~~~----~~~~~~-~h~~~V-~sl~fsp--dg~~llasgs~Dg~I~vwDl~t~~~i~--~~~~~- 682 (837)
.+++||+|.-|...-... ....+. .....| ..+++.. .+..+.++--..++|.|||-.=.+... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998532221 112222 112333 3455543 345555555567899999865322211 11100
Q ss_pred --C-----Cee------EEEE---ecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcC------CCCE
Q 003236 683 --S-----GAT------QMRF---QPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY 738 (837)
Q Consensus 683 --~-----~i~------sl~~---sp~g~~llags~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~sp------dg~~ 738 (837)
. .|. -+.| .++...-+.+..-|.|.+||+. +..+.++. +.-.....|+..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 011 1111 1122222333344789999987 44555553 2334556677655 3555
Q ss_pred EEEEe-CCeEEEEEcCCC
Q 003236 739 LASVS-DELVRVWSIGSG 755 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~ 755 (837)
|+.-- ||+|.+||..++
T Consensus 264 LVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSG 281 (336)
T ss_pred EEeecCCceeEEecCCCC
Confidence 55444 999999999887
No 414
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.20 E-value=0.27 Score=44.83 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=66.8
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCE
Q 003236 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 727 (837)
Q Consensus 648 fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V 727 (837)
|.-+|..-|+.|+.|..|++|+-. +.+..+.....+++++-... ..++.+..+|+|-+|+-. ..+..++. +..+
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKS-K~~~ 83 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKS-KNQV 83 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeecc-CCCe
Confidence 445666778899999999999754 67778887888999888776 779999999999999863 33444443 3346
Q ss_pred EEEEEcC-C--CC-EEEEEe-CCeEE
Q 003236 728 HSVCWNT-S--GE-YLASVS-DELVR 748 (837)
Q Consensus 728 ~sl~~sp-d--g~-~Lasgs-Dg~I~ 748 (837)
+++++.. + |. -|++|- +|.|-
T Consensus 84 ~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 84 TSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEEcCCCCCceEEEEEecCCeEE
Confidence 6665543 2 22 455554 77664
No 415
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.15 E-value=2 Score=45.31 Aligned_cols=255 Identities=11% Similarity=-0.010 Sum_probs=154.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
-..|+-.+||..-+++...+.|--.|-.+++....--+....-..|...||+..-++-+.. -|.-.|-++.+.....+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4567888999888888888888888888888886665666667788889998876664433 455556555443222221
Q ss_pred --ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 638 --GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 638 --~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
.-........|.+.|. +-+++. .|.---.|..+ ..+.++.. ....+.|+..|+|...++.-.++.|-..|..+
T Consensus 143 ~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 143 LEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred cccCCCcccceeeCCCcc-EEEeec-cccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 2235677888998876 444554 22111112211 12223322 35577899999999998888889999999877
Q ss_pred CeEEEEE--cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 714 QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 714 ~~~~~~l--~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
+.....- .........+--+|.+..-++.. .+.+.-||-.... -.-..+......-.++.+...++.-++-...+
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~sea~ag 297 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEeeccccC
Confidence 6322111 11123344555667787777766 7788888765542 22234444555556666666666544444556
Q ss_pred eEEEEECCCCcEEEeccCCCCeeEEEEe
Q 003236 791 TLELWNMTENKTLTLSAHDKLVSSLAAS 818 (837)
Q Consensus 791 ~I~IwDl~s~~~~~l~~h~~~V~sla~s 818 (837)
.|.-||-++.....+....-.+..+...
T Consensus 298 ai~rfdpeta~ftv~p~pr~n~gn~ql~ 325 (353)
T COG4257 298 AIGRFDPETARFTVLPIPRPNSGNIQLD 325 (353)
T ss_pred ceeecCcccceEEEecCCCCCCCceecc
Confidence 7777777666655444333333333333
No 416
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.0065 Score=61.73 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=81.1
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE-E
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH-S 773 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~-s 773 (837)
+.+.+.++.|.-++++..+....-. -|.....-+ .-+.-+++|+ +|.|++|...-.. .....+......|. .
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLG 107 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccc--hHHHhhhcccccceec
Confidence 4556667788777776543221111 121111111 2234455665 9999999876321 11111111112222 2
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCC-CCeeEEEEeCCCCEEEEE--ECCCcEEEeC
Q 003236 774 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSSLAASTVNGMVASA--SHDKCVKIWK 837 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~-~~V~sla~spdg~~LaSg--s~DG~I~IWd 837 (837)
+..-.++.+.++++.++.|+.|++.-++.+ ....|. .++..+..+..+++|+++ |.|..++.|+
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 223334557889999999999999999988 444565 567777777778888888 8888888886
No 417
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.10 E-value=2.5 Score=47.60 Aligned_cols=144 Identities=11% Similarity=0.116 Sum_probs=81.0
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-cEEEEeCCC--Ce--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 556 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs-----------~Dg-~I~VWd~~t--~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........++|.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3466899999999877643 223 677775432 32 223443334456889999888 44444444
Q ss_pred eEEEEEcCCC-----C--ceeEEeec----cccceEEEEEcCCCCeEEEEEeC------------------CCcEEEEEC
Q 003236 620 TVRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI 670 (837)
Q Consensus 620 ~I~IWDl~~~-----~--~~~~~~~~----h~~~V~sl~fspdg~~llasgs~------------------Dg~I~vwDl 670 (837)
.+++.|.+.. + ..+..+.. +......++|.|+|..++..++. .|.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334455321 1 11112222 12447789999998755544421 144666666
Q ss_pred CCCeeeeEEecCCCeeEEEEecCCCEEEEEE
Q 003236 671 NNGSCAGVFKCQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 671 ~t~~~i~~~~~~~~i~sl~~sp~g~~llags 701 (837)
..++.............++|++++..+++-.
T Consensus 172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 6554332222233457899999877765543
No 418
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.06 Score=65.23 Aligned_cols=98 Identities=12% Similarity=0.157 Sum_probs=70.9
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC----
Q 003236 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS---- 683 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~---- 683 (837)
.+..++.|+..|.|...|+..+-.....-..-.++|++++|+.+|. +++.|-.+|.|.+||+..++.++.+...+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3557888988999999888764222222233457899999999976 66688889999999999999888887532
Q ss_pred CeeEEEEecCCCEEEEEEcCCeE
Q 003236 684 GATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg~I 706 (837)
++..+.+..++..++++...|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCce
Confidence 34455555666667777777753
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.02 E-value=1.5 Score=46.57 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE-CCCCe
Q 003236 599 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS 674 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs---~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD-l~t~~ 674 (837)
.+.+.++++++..++... ....++++...... ...+. ...+..-.|++++. +.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeecc--CCccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence 688999999999877766 33455665544322 22223 23788889999955 444444455556553 33333
Q ss_pred eee-EEec--C-CCeeEEEEecCCCEEEEEEc---CCeEEEEECC---CC------eEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 675 CAG-VFKC--Q-SGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 675 ~i~-~~~~--~-~~i~sl~~sp~g~~llags~---dg~I~iwDl~---s~------~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
... .... . ..|..+.++|||.+++.... ++.|.+--+. .+ ..+.........++.+.|.+++.+
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 221 1111 1 27999999999999887773 4666666433 22 111222233568899999999998
Q ss_pred EEEEe
Q 003236 739 LASVS 743 (837)
Q Consensus 739 Lasgs 743 (837)
++.+.
T Consensus 180 ~V~~~ 184 (253)
T PF10647_consen 180 VVLGR 184 (253)
T ss_pred EEEeC
Confidence 88877
No 420
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.88 E-value=1.3 Score=50.29 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=49.4
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEE-EEE-cCC----------------CCEEEEEe--
Q 003236 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS-VCW-NTS----------------GEYLASVS-- 743 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~s-l~~-spd----------------g~~Lasgs-- 743 (837)
.+.+++.+|.+.+.++...-|.|.++|+.++..++.+++..+.-.. +.. ... ..+|+.-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 3678999999877777666699999999999888888775543211 111 010 12344333
Q ss_pred CCeEEEEEcCCC
Q 003236 744 DELVRVWSIGSG 755 (837)
Q Consensus 744 Dg~I~IwDl~s~ 755 (837)
-|.|.||+++.+
T Consensus 389 Rg~lEvW~~~~g 400 (415)
T PF14655_consen 389 RGILEVWSMRQG 400 (415)
T ss_pred CCeEEEEecCCC
Confidence 789999999887
No 421
>PHA03098 kelch-like protein; Provisional
Probab=95.73 E-value=0.35 Score=57.31 Aligned_cols=155 Identities=9% Similarity=0.062 Sum_probs=74.1
Q ss_pred CeEEEEEeCC-----CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEE-
Q 003236 653 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRL- 718 (837)
Q Consensus 653 ~~llasgs~D-----g~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags~d------g~I~iwDl~s~~~~~- 718 (837)
+.+++.|+.+ ..+..||..+.+-...-....+ -.+++ .-++..++.|+.+ +.+..||..+.+-..
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 4566677654 3577888876553322111111 11222 2344555566532 468899987653221
Q ss_pred -EEcCCCCCEEEEEEcCCCCEEEEEe-CC--------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 719 -KLQGHKNQVHSVCWNTSGEYLASVS-DE--------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 719 -~l~~h~~~V~sl~~spdg~~Lasgs-Dg--------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
.+...... .+++. .++.+++.|+ ++ .+.+||..+..- ..+............+.+ ++..+++|+.
T Consensus 422 ~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPISHYG-GCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGD 496 (534)
T ss_pred CCCCccccC-ceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCC
Confidence 11111111 12222 2455555554 21 388888876521 111111111111122222 5555666654
Q ss_pred C-----CeEEEEECCCCcEEEeccCCCCee
Q 003236 789 Y-----ETLELWNMTENKTLTLSAHDKLVS 813 (837)
Q Consensus 789 d-----g~I~IwDl~s~~~~~l~~h~~~V~ 813 (837)
+ +.|.+||..+.....+......+.
T Consensus 497 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~ 526 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNTWTLFCKFPKVIG 526 (534)
T ss_pred cCCcccceeEEEeCCCCEEEecCCCccccc
Confidence 3 478999998887665444333333
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.67 E-value=1.3 Score=54.34 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=46.9
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEecCCCee-------------EEEEec--CCCEEEEEEc----------CCeEEEE
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-------------QMRFQP--RLGRILAAAI----------ENYISIL 709 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-------------sl~~sp--~g~~llags~----------dg~I~iw 709 (837)
.++.++.|+.|.-.|.++|+.+..+..++.+. .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 45567779999999999999998775433321 111111 2456666643 5889999
Q ss_pred ECCCCeEEEEEc
Q 003236 710 DVETQVCRLKLQ 721 (837)
Q Consensus 710 Dl~s~~~~~~l~ 721 (837)
|.++++.+..+.
T Consensus 342 Da~TGkl~W~~~ 353 (764)
T TIGR03074 342 DVNTGALVWAWD 353 (764)
T ss_pred ECCCCcEeeEEe
Confidence 999999998876
No 423
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.64 E-value=0.53 Score=54.25 Aligned_cols=171 Identities=12% Similarity=0.160 Sum_probs=104.1
Q ss_pred cceEEEEEcCCCCeEEEEEe--CCCcEEEEECCCCeeeeEEecCCCeeEEEEecC----CCEEEEEEcCCeEEEEECCC-
Q 003236 641 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LGRILAAAIENYISILDVET- 713 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs--~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~----g~~llags~dg~I~iwDl~s- 713 (837)
.+|..++|. ||+.++.+.- .+|.+++=| .+.+..| ..|..+.|.|- ...+++.-....|.||-+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 468888887 5666665542 233333322 1223333 56888999885 34688888899999998752
Q ss_pred ----CeEEEEEcC-C--CCC--EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 714 ----QVCRLKLQG-H--KNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 714 ----~~~~~~l~~-h--~~~--V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
.+.+..-.. . .-+ .-.+.|+|....|++-. .+.-.+++++.... .+..-....+.|.|.+|..||..|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s--rVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS--RVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc--eEEEeccCCceEEEEEecCcCCEE
Confidence 222222111 1 112 23578999999998877 44445666665432 222222457889999999999988
Q ss_pred EEEEcCC-eEEEEECCCCcEE-----EeccCCCCeeEEEEeCC
Q 003236 784 LVIGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAASTV 820 (837)
Q Consensus 784 ~sgs~dg-~I~IwDl~s~~~~-----~l~~h~~~V~sla~spd 820 (837)
+++-... .-+|||-...... .+..-.+.|.+|.-.-|
T Consensus 171 VVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred EEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 8776654 6789986544322 33444556766654433
No 424
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.097 Score=63.76 Aligned_cols=141 Identities=11% Similarity=0.032 Sum_probs=89.8
Q ss_pred CeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeEEE-----------EeccCCCCeEEEEEcCC-CCEEEEEeCCCeEE
Q 003236 557 KVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKS-----------TLEEHTQWITDVRFSPS-LSRLATSSADRTVR 622 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs--~Dg~I~VWd~~t~~~~~-----------~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~ 622 (837)
+|..+...+|+...++.. .+-.|.+||+++..... +.......+.++.|.|. ....+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 355566666777655443 33478888987543221 11223345678889885 33467777899999
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-----CCCeeEEEEecCCCEE
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQPRLGRI 697 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-----~~~i~sl~~sp~g~~l 697 (837)
|..+......+.. ......++|++|+|.|..++ .|...|++.-|... .+....+.+ ...|.+++|.....++
T Consensus 182 V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~-iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLF-IGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcc-cCcccceeeEEeccccceee-EecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 9887654432333 23557789999999988665 78888999888665 332232222 4678999998775555
Q ss_pred EEE
Q 003236 698 LAA 700 (837)
Q Consensus 698 lag 700 (837)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 543
No 425
>PLN02153 epithiospecifier protein
Probab=95.61 E-value=1.2 Score=49.36 Aligned_cols=175 Identities=7% Similarity=-0.032 Sum_probs=80.4
Q ss_pred CeEEEEEeCC-----CcEEEEECCCCeeeeEEec-----CC-CeeEEEEecCCCEEEEEEcC-----------CeEEEEE
Q 003236 653 EDLLCSCDNN-----SEIRYWSINNGSCAGVFKC-----QS-GATQMRFQPRLGRILAAAIE-----------NYISILD 710 (837)
Q Consensus 653 ~~llasgs~D-----g~I~vwDl~t~~~i~~~~~-----~~-~i~sl~~sp~g~~llags~d-----------g~I~iwD 710 (837)
+.+++.|+.+ ..+.+||+.+.+-...-.. .. .....+...+++.++.|+.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566666643 3578899887654322111 11 11122223344556666643 2477889
Q ss_pred CCCCeEEEEEcCC----C-CCEEEEEEcCCCCEEEEEe-C-------------CeEEEEEcCCCCCceeEEEeec-CCCc
Q 003236 711 VETQVCRLKLQGH----K-NQVHSVCWNTSGEYLASVS-D-------------ELVRVWSIGSGSKGECIHELSC-TGNK 770 (837)
Q Consensus 711 l~s~~~~~~l~~h----~-~~V~sl~~spdg~~Lasgs-D-------------g~I~IwDl~s~~~~~~i~~~~~-~~~~ 770 (837)
.++.+=.. +... . ..-.+++. -++++++.++ + ..|.+||+.+.. ...+..... ....
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCc
Confidence 87653221 1111 0 11112222 2455555433 2 358888887652 112211100 1111
Q ss_pred eEEEEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEeccCCC------C--eeEEEEeCCCCEEEEEE
Q 003236 771 FHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTLSAHDK------L--VSSLAASTVNGMVASAS 828 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~d--------------g~I~IwDl~s~~~~~l~~h~~------~--V~sla~spdg~~LaSgs 828 (837)
....+..-++..++.|+.. +.|+.||..+.....+..... . ..++.+..++++++.|+
T Consensus 243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 1111222345566666641 268889988776654431111 1 12333444456777777
Q ss_pred CC
Q 003236 829 HD 830 (837)
Q Consensus 829 ~D 830 (837)
.+
T Consensus 323 ~~ 324 (341)
T PLN02153 323 KL 324 (341)
T ss_pred cC
Confidence 64
No 426
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.1 Score=63.55 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=94.8
Q ss_pred CeEEEEEcCCCCEEEEE--eCCCeEEEEEcCCCCcee----EEee------ccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 599 WITDVRFSPSLSRLATS--SADRTVRVWDTENPDYSL----RTFT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 599 ~I~~l~fspdg~~Latg--s~Dg~I~IWDl~~~~~~~----~~~~------~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
.|..+...+|+...++. +.+-.|..||+++-.... ..+. .....+.++.|.|.=....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555556676554433 344588999987532111 1111 12244567889887665667778899999
Q ss_pred EEECCCCe-eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEcCCCCEEEE
Q 003236 667 YWSINNGS-CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 667 vwDl~t~~-~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~----h~~~V~sl~~spdg~~Las 741 (837)
+..+.... .+..+......++++|+|.|+.+++|...|++.-|...-. ....+.+ ....|.||+|...-.++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 88776432 2333455677899999999999999999999998876532 2222221 2468999999988887776
Q ss_pred Ee
Q 003236 742 VS 743 (837)
Q Consensus 742 gs 743 (837)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 44
No 427
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.46 E-value=2.5 Score=44.57 Aligned_cols=211 Identities=10% Similarity=0.053 Sum_probs=130.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~ 678 (837)
.-..|+-.+||..-+++...+.|--.|..+++. ...-.+....-..|...||+...++-. ..-|.-+|-++.+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~aI~R~dpkt~evt~f 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDT--GLAIGRLDPKTLEVTRF 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecC--cceeEEecCcccceEEe
Confidence 345677788998889988888888888888774 333344555667788888887555222 22566666665543321
Q ss_pred -Ee---cCCCeeEEEEecCCCEEEEEEcC---------CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C
Q 003236 679 -FK---CQSGATQMRFQPRLGRILAAAIE---------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 744 (837)
Q Consensus 679 -~~---~~~~i~sl~~sp~g~~llags~d---------g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D 744 (837)
+. .........|.+.|...+++... +.|++|+.- .....+.||..|||...++.- +
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence 11 13457788999998888877632 234444432 234567789999999888766 7
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE--EeccCCCCeeEEEEeCCCC
Q 003236 745 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 745 g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~ 822 (837)
+.|-..|..++.. +.+..-.........+-.+|.+..-++....+.+..||-...... .+.+....-.++.+...++
T Consensus 210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 7777777766522 222222222334455666777777777667778888887655443 3334444444444444443
Q ss_pred E
Q 003236 823 M 823 (837)
Q Consensus 823 ~ 823 (837)
.
T Consensus 289 V 289 (353)
T COG4257 289 V 289 (353)
T ss_pred E
Confidence 3
No 428
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.43 E-value=1.2 Score=49.69 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=84.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
..++|.++.||+|.+.||+--.|++|.+++....+.. .+.+..+..|...+|+.+ .-+|..+..| +-+|-+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 4568999999999999999999999999987432222 233444566999999866 5566665555 777877766
Q ss_pred CceeEEeeccccceEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCee
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSC 675 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~~llasgs-~Dg~I~vwDl~t~~~ 675 (837)
+..++..+.|...|....|+++...++.+.+ ..+++.=+-++++..
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v 189 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTM 189 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeecee
Confidence 6667778888999999999998765554444 344444444554433
No 429
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.23 Score=60.55 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=71.1
Q ss_pred CCCEEEEEECCCcEEEEeCCCC-eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceE
Q 003236 566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~-~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~ 644 (837)
-+.+++.|+..|.|...|.... .....=..-.++|++++|+.+|+.++.|-.+|.|.+||+..++. ++.+..|..++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence 3557888998999998887642 22122233457899999999999999999999999999998653 666666665555
Q ss_pred EEE---EcCCCCeEEEEEeCCCcEEEEEC
Q 003236 645 SLD---FHPSKEDLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 645 sl~---fspdg~~llasgs~Dg~I~vwDl 670 (837)
++- +..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 443 333434 5667776675 4543
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.34 E-value=0.49 Score=53.23 Aligned_cols=147 Identities=11% Similarity=0.036 Sum_probs=82.9
Q ss_pred CCeeEEEEecCCCEEEEEE-----------cCC-eEEEEECCC--Ce--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCe
Q 003236 683 SGATQMRFQPRLGRILAAA-----------IEN-YISILDVET--QV--CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 746 (837)
Q Consensus 683 ~~i~sl~~sp~g~~llags-----------~dg-~I~iwDl~s--~~--~~~~l~~h~~~V~sl~~spdg~~LasgsDg~ 746 (837)
.....++|.++|+.+++-. ..+ .|.+++-.+ ++ ....+.......+.+++.+++ ++++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 3456777777776555532 123 677776543 22 233443344466889999988 444433443
Q ss_pred EEEEEcCCCC----Cce-eEEEeecC----CCceEEEEEeCCCCEEEEEEcC-------------------CeEEEEECC
Q 003236 747 VRVWSIGSGS----KGE-CIHELSCT----GNKFHSCVFHPTFPSLLVIGCY-------------------ETLELWNMT 798 (837)
Q Consensus 747 I~IwDl~s~~----~~~-~i~~~~~~----~~~I~sv~fspdg~~L~sgs~d-------------------g~I~IwDl~ 798 (837)
+++.|..... ..+ .+..+... ......++|.|||...++.+.. +.|.-+|..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3344543221 112 22223222 3447789999999865554421 356666666
Q ss_pred CCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 799 ENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 799 s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
+++...+...-.....++|+++|.++++-..+
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 65554443333456789999999888765433
No 431
>PHA03098 kelch-like protein; Provisional
Probab=95.32 E-value=0.52 Score=55.83 Aligned_cols=183 Identities=9% Similarity=-0.002 Sum_probs=87.8
Q ss_pred CCCEEEEEECCC------cEEEEeCCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCce
Q 003236 566 DGKLLATGGHDK------KAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS 632 (837)
Q Consensus 566 dg~~Lasgs~Dg------~I~VWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~~~ 632 (837)
++.+++.||.++ .+..||..+.+....- .........+.+ ++.+++.|+.+ ..+.+||..+....
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556677776542 5778887765543221 111112222222 56777777765 35778888776542
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEcC-
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAIE- 703 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags~d- 703 (837)
...-..+...-.+++.. ++.+++.|+.+ ..+..||+.+.+-...-....+ ..++ ...++..+++|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccC
Confidence 21111111111122222 24566666632 4588899887654332221111 1122 22344555555542
Q ss_pred -------CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCC
Q 003236 704 -------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG 755 (837)
Q Consensus 704 -------g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~ 755 (837)
..+.+||..+.+-... +.........+.+ ++++++.|+ + +.|.+||..+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388899887542221 1111111112222 566666665 2 26777777654
No 432
>PRK13684 Ycf48-like protein; Provisional
Probab=95.24 E-value=1.8 Score=48.09 Aligned_cols=150 Identities=11% Similarity=0.088 Sum_probs=86.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEE-EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~I-WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~ 675 (837)
...+.++.+.+++.+++++ ..|.+.. +|-..... ......-...++++.+.+++.. ++.+ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW-~~~~~~~~~~l~~i~~~~~g~~-~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAW-TPHQRNSSRRLQSMGFQPDGNL-WMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeE-EEeeCCCcccceeeeEcCCCCE-EEEe-cCCEEEEccCCCCCc
Confidence 4578999999988766665 4554443 22221111 1122234567899999998764 4344 467665333444433
Q ss_pred eeEEec-----CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCeE
Q 003236 676 AGVFKC-----QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELV 747 (837)
Q Consensus 676 i~~~~~-----~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l---~~h~~~V~sl~~spdg~~LasgsDg~I 747 (837)
-..... ...+..+.+.+++. +++++.+|.|.. ....++.-... ..-....+.+.|..+++.+++|..|.|
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 222121 23467788888655 555666676553 33333322222 222346788888888888888889988
Q ss_pred EEEEc
Q 003236 748 RVWSI 752 (837)
Q Consensus 748 ~IwDl 752 (837)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87763
No 433
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.19 E-value=7 Score=43.93 Aligned_cols=187 Identities=5% Similarity=-0.046 Sum_probs=100.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeecc-ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC--Cee
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GAT 686 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h-~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i~ 686 (837)
..++++..+|.|.-.|.+++...-...... ...+.+-.+..+|. ++.++.++.++++|.++|+.+..+.... .+.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 345666788888888888766421111111 12233323333554 4567778899999999999999888766 111
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC---CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeE
Q 003236 687 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 687 sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~---~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i 761 (837)
...+. ....++.++.++.+...|..+++.+....... ..+..--...++..++... ++.+.-+|..++. .+
T Consensus 147 ~~~v~-~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~---~~ 222 (370)
T COG1520 147 SPPVV-GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT---LK 222 (370)
T ss_pred cCcEE-cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc---Ee
Confidence 21222 23445555578999999999988877654322 1111111122333333333 3356666665552 22
Q ss_pred EEee----cCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 762 HELS----CTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 762 ~~~~----~~~~------~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
...+ .... .+..-...-++ .++.++.++.+..+|..+++.+
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 2211 0000 01111111122 2466677777888888888877
No 434
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.08 E-value=9.1 Score=47.55 Aligned_cols=177 Identities=16% Similarity=0.196 Sum_probs=97.1
Q ss_pred cCCCCeEEEEEc---C----CCCEEEEEeCCCeEEEEEcCCCC--------------ceeEEeec---cccceEEEEEcC
Q 003236 595 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTENPD--------------YSLRTFTG---HSTTVMSLDFHP 650 (837)
Q Consensus 595 ~h~~~I~~l~fs---p----dg~~Latgs~Dg~I~IWDl~~~~--------------~~~~~~~~---h~~~V~sl~fsp 650 (837)
....+|..|+|. . ..++|++= ....+.|+...-.+ .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 12355544 45566777622111 01222221 123566788888
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEE
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV 730 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl 730 (837)
....-||..+..|...|||+....... .... -+.....|.| ++|... .+....|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~-----~~~~----------~~~~~~~gsi-~~d~~e----------~s~w~rI 209 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRK-----SSNL----------RLSRNISGSI-IFDPEE----------LSNWKRI 209 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccC-----Ccce----------eeccCCCccc-cCCCcc----------cCcceee
Confidence 776677788888888888882111100 0000 1111112333 233221 1445678
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 731 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 731 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
.|.++...|++++...+.++|+.+......+ ........|..+.-+++....+..-....|..+|+..
T Consensus 210 ~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 210 LWVSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred EecCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 8988888899999888999999877432221 2223456688888777732222222335666667665
No 435
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.03 E-value=8.2 Score=43.88 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=66.1
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-----EEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003236 682 QSGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 682 ~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~-----~~~~l~~--h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s 754 (837)
...+..+.+.+++..++++ ..|.+..- ...+. ....+.. ....+.++.|.+++..+++|..|.|.+.. ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CC
Confidence 4567888898887766555 55655443 22332 1222221 12358899999999998888888666553 44
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
++..........-...++.+.|.++++ .++.+.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 432222222222345678889877755 6667777776654
No 436
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.76 E-value=15 Score=45.53 Aligned_cols=165 Identities=12% Similarity=0.094 Sum_probs=86.2
Q ss_pred EEEEECCCCeeeeEEecCC-----CeeEEEEecCCCE--EEEEEc-----------CCeEEEEECCC-CeEEEEEc--CC
Q 003236 665 IRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGR--ILAAAI-----------ENYISILDVET-QVCRLKLQ--GH 723 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~-----~i~sl~~sp~g~~--llags~-----------dg~I~iwDl~s-~~~~~~l~--~h 723 (837)
|+++|..+++.+..+.... .+..+.|+..... +++++. +|.++.|++-. ++.+.-+. .-
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 6666666666655555422 2444555543332 333332 34466666533 33222221 12
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE--EEECCCCc
Q 003236 724 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE--LWNMTENK 801 (837)
Q Consensus 724 ~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~--IwDl~s~~ 801 (837)
.+.|. +..|...++.+|-...+++||+...+.. ...++......|+.+.+ .+..|++|.....|. .|+-.++.
T Consensus 935 ~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K~lL-Rk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 935 PGPVG--AICPFQGRVLAGVGRFLRLYDLGKKKLL-RKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred Cccce--EEeccCCEEEEecccEEEEeeCChHHHH-hhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence 23343 4557667888777889999999765221 11112222344555554 345788888766554 45555566
Q ss_pred EEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 802 TLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 802 ~~~l~~--h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
.+.+.. -...|+++.+- |...+|.|..=|.+.+
T Consensus 1010 l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred EEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence 554432 23456666554 3445666655565544
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.69 E-value=1.8 Score=52.69 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
-.|..|.++++|++||..|..|.+.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 46889999999999999987664443
No 438
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.26 E-value=7.3 Score=42.24 Aligned_cols=165 Identities=8% Similarity=0.084 Sum_probs=95.7
Q ss_pred cEEEEECCCCeeeeEEecCC-------CeeEEEEecCC-----CEEEEEEc-CCeEEEEECCCCeEEEEEcCCC------
Q 003236 664 EIRYWSINNGSCAGVFKCQS-------GATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGHK------ 724 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~~-------~i~sl~~sp~g-----~~llags~-dg~I~iwDl~s~~~~~~l~~h~------ 724 (837)
.|.+||+++++.++.+..+. .+..+.+.... .+++.+.. .+.|.|||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 67889999999888887643 35667776632 34444444 3689999999987766554321
Q ss_pred -------------CCEEEEEEcC---CCCEEEEEeCCeEEEEEcCC-----CCC------ceeEEEeecCCCceEEEEEe
Q 003236 725 -------------NQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSK------GECIHELSCTGNKFHSCVFH 777 (837)
Q Consensus 725 -------------~~V~sl~~sp---dg~~LasgsDg~I~IwDl~s-----~~~------~~~i~~~~~~~~~I~sv~fs 777 (837)
..+..++.+| +++.|+...=...++|.+.+ ... ...+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 2356666655 66677766622233444332 111 01122222223456778899
Q ss_pred CCCCEEEEEEcCCeEEEEECCCC----c--EEEeccC-CCCeeEEEEeC--CCCEEEEEE
Q 003236 778 PTFPSLLVIGCYETLELWNMTEN----K--TLTLSAH-DKLVSSLAAST--VNGMVASAS 828 (837)
Q Consensus 778 pdg~~L~sgs~dg~I~IwDl~s~----~--~~~l~~h-~~~V~sla~sp--dg~~LaSgs 828 (837)
++|..+++--..+.|..|+..+. . .+..... -..+.++++.+ +|.+.+.++
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 99887777778889999998761 2 2222222 35678999998 777666553
No 439
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.23 E-value=2.7 Score=43.06 Aligned_cols=141 Identities=20% Similarity=0.230 Sum_probs=82.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC--C---cEEEE---ECC--CCeeee--
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--S---EIRYW---SIN--NGSCAG-- 677 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D--g---~I~vw---Dl~--t~~~i~-- 677 (837)
..|+.+...+.|.+|++.............-+.|..+.++..|++++..=.+. . .+++| +.. ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 45555566788999999954444443333458899999999988666432222 1 44554 222 111111
Q ss_pred ---------------------EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EEEEc----CC-CC
Q 003236 678 ---------------------VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RLKLQ----GH-KN 725 (837)
Q Consensus 678 ---------------------~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~------~~~l~----~h-~~ 725 (837)
.+.....+.+++..|-.+.|++|+. +.+.+|.+..... ...|. .| .+
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 1112345678888887777777764 6777887654432 11111 11 11
Q ss_pred -CEEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003236 726 -QVHSVCWNTSGEYLASVSDELVRVWSIG 753 (837)
Q Consensus 726 -~V~sl~~spdg~~LasgsDg~I~IwDl~ 753 (837)
.+..+++. +.|+|..++..++|+.+.
T Consensus 188 ~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 23445553 678888888888888653
No 440
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.23 E-value=3.3 Score=47.81 Aligned_cols=268 Identities=13% Similarity=0.016 Sum_probs=133.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
..+|..+.+.-.|. |.+|+.|| +..||..+++.+..-.... ..|..+.-+-.+ .|.+|+.+| |++.+.+.....-
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 34588888888884 55577666 6778888877776554433 566666655554 477777776 7777766522211
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEEecC---CCeeEEEEecCCCEEEEEEcCCeEEEE
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFKCQ---SGATQMRFQPRLGRILAAAIENYISIL 709 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~~~---~~i~sl~~sp~g~~llags~dg~I~iw 709 (837)
....-....|..+.-+..|. +..|+.+|..+ +....... +...+.+ +.|.++-...+ +.+-+++.++.+++-
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~ 315 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGE--LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYL 315 (671)
T ss_pred cCCCCcchheeeeecccCCC--EEEeeccccee-EecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEe
Confidence 11112234455555444443 33455555333 23332222 1122211 23344444444 446666666666554
Q ss_pred ECCCCeEEEEEcCCCCCE-EEEEEcC--CC-CEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 710 DVETQVCRLKLQGHKNQV-HSVCWNT--SG-EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 710 Dl~s~~~~~~l~~h~~~V-~sl~~sp--dg-~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
+.. ......+...++.+ -.++..| .+ ......+-+.+.+-+-.++.....+ +.-.+..|+.+++..++. +-.
T Consensus 316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv--~q~Rg~nit~~~~d~~g~-lWl 391 (671)
T COG3292 316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSV--HQLRGMNITTTLEDSRGR-LWL 391 (671)
T ss_pred cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEe--eeccccccchhhhccCCc-EEE
Confidence 432 11111121111111 1111111 01 1111111223333333333211122 222235566777777554 777
Q ss_pred EEcCCeEEEEECCC-CcEEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 786 IGCYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 786 gs~dg~I~IwDl~s-~~~~~l~--~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
++..+-+..|+..+ +..+... ...++|..|.=.|+++ |..|+.+|.+++
T Consensus 392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 77776677777766 3333222 2356788888888888 677888887653
No 441
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.23 E-value=0.12 Score=39.61 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...|.+++|+|...+||.|+.||.|.||.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456999999999999999999999999998
No 442
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.22 E-value=1.6 Score=51.96 Aligned_cols=125 Identities=11% Similarity=0.117 Sum_probs=81.9
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEc--CCCCEEEEEeCCCe
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRT 620 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~I~~l~fs--pdg~~Latgs~Dg~ 620 (837)
.+.....+...-..++-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |++..+++.+..+.
T Consensus 18 ~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 18 EWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 334445555555566667667666665555556689999999877554332 357889999996 58899999999999
Q ss_pred EEEEEcC-----CCC---ceeEE--eeccc-cceEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 003236 621 VRVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671 (837)
Q Consensus 621 I~IWDl~-----~~~---~~~~~--~~~h~-~~V~sl~fspdg~~llasgs~Dg~I~vwDl~ 671 (837)
|.+|.-. ... ..++. +..|+ .+|.+..|.++|. +++++ ++.+.|+|-.
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 9998532 111 11221 23343 5799999999875 33233 4578888653
No 443
>PRK10350 hypothetical protein; Provisional
Probab=94.20 E-value=0.17 Score=46.11 Aligned_cols=29 Identities=34% Similarity=0.316 Sum_probs=14.8
Q ss_pred cccccchhhhh-hHHHHHHHHHHHHHHHHH
Q 003236 68 NEKHSESAASY-IESQVIKAREQQQQQQQQ 96 (837)
Q Consensus 68 ~~~~s~~~~~y-~q~qq~q~~~qqqqqqq~ 96 (837)
+...++...-| +.+++..+.+.|.+|+++
T Consensus 21 N~~NNPnqpGY~ipSQQRmQtqMQ~QQ~qQ 50 (145)
T PRK10350 21 NTLNNPNQPGYQIPSQQRMQTQMQTQQIQQ 50 (145)
T ss_pred hccCCCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 33444555667 666655544444444333
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=94.15 E-value=1.4 Score=51.64 Aligned_cols=141 Identities=7% Similarity=-0.009 Sum_probs=66.8
Q ss_pred CCCEEEEEECCC-----cEEEEeCCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCCcee-EE
Q 003236 566 DGKLLATGGHDK-----KAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSL-RT 635 (837)
Q Consensus 566 dg~~Lasgs~Dg-----~I~VWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D--g~I~IWDl~~~~~~~-~~ 635 (837)
++.++++||.++ .+..||..+.+.... +.........+. -++...+.|+.+ ..+..||..++.... ..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455667776543 467788776543322 111111122222 356777777754 357888876654311 11
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCC---cEEEEECCCCeeeeEEecCCCee-EEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg---~I~vwDl~t~~~i~~~~~~~~i~-sl~~sp~g~~llags~dg~I~iwDl 711 (837)
+.........+.+ ++.+.+.|+.++ .+..||.++..-...-....+.. .....-++ .|++.+ |.+.+||.
T Consensus 349 l~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~-~IYv~G--G~~e~ydp 422 (480)
T PHA02790 349 LLKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR-RLFLVG--RNAEFYCE 422 (480)
T ss_pred CCCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECC-EEEEEC--CceEEecC
Confidence 1111111112222 245666776543 46788887665433221111111 11122333 444433 45778888
Q ss_pred CCC
Q 003236 712 ETQ 714 (837)
Q Consensus 712 ~s~ 714 (837)
++.
T Consensus 423 ~~~ 425 (480)
T PHA02790 423 SSN 425 (480)
T ss_pred CCC
Confidence 765
No 445
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=94.15 E-value=10 Score=45.31 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=68.6
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC-CCCCEEEEEEcC------CCCEEEEEe--CC-
Q 003236 678 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG-HKNQVHSVCWNT------SGEYLASVS--DE- 745 (837)
Q Consensus 678 ~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~--~~~~l~~-h~~~V~sl~~sp------dg~~Lasgs--Dg- 745 (837)
.+.....+..+.|..++..+++....|.|.+||...+. .+..+.. +...+.--+|-+ ...++++.+ ++
T Consensus 125 ~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 125 ELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred EEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC
Confidence 44557889999999999999999999999999993322 1112221 222221113322 123444333 22
Q ss_pred --eEEEEEcCCCCCceeEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 746 --LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 746 --~I~IwDl~s~~~~~~i~~~~---~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+++++.+.... ..+.++. .+......+.|.-....|+.- .++.|.+|++...+..
T Consensus 205 k~~ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 205 KLSYKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred cEEEEEEEeccCC--cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 78888882211 2222222 222333333343333334444 7779999999887655
No 446
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.08 E-value=6.9 Score=43.04 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=48.5
Q ss_pred CeEEEEEeCC-----CcEEEEECCCCeee---eEEe-cCCCe--eEEEEecCCCEEEEEEc-----CCeEEEEECCCCe-
Q 003236 653 EDLLCSCDNN-----SEIRYWSINNGSCA---GVFK-CQSGA--TQMRFQPRLGRILAAAI-----ENYISILDVETQV- 715 (837)
Q Consensus 653 ~~llasgs~D-----g~I~vwDl~t~~~i---~~~~-~~~~i--~sl~~sp~g~~llags~-----dg~I~iwDl~s~~- 715 (837)
+.+++.|+.+ ..+..||+.+.+.. ..+. ..... .+++. -++..++.|+. ...+..||+.+.+
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 4566666644 35777787765531 1111 11111 12222 24455555553 2468889987653
Q ss_pred -EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEEcCCC
Q 003236 716 -CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG 755 (837)
Q Consensus 716 -~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg----~I~IwDl~s~ 755 (837)
.+..+... ......+..-++++++.|+ ++ .+.+||..+.
T Consensus 152 ~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 152 FELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 22222211 1112222233566666665 43 3568888764
No 447
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=94.03 E-value=21 Score=44.33 Aligned_cols=158 Identities=18% Similarity=0.193 Sum_probs=95.6
Q ss_pred CCCCCeEEEEEc---C----CCCEEEEEECCCcEEEEeCC------C---------CeEEEEecc---CCCCeEEEEEcC
Q 003236 553 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCTE------S---------FTVKSTLEE---HTQWITDVRFSP 607 (837)
Q Consensus 553 ~H~~~V~sl~fS---p----dg~~Lasgs~Dg~I~VWd~~------t---------~~~~~~l~~---h~~~I~~l~fsp 607 (837)
.-..+|..|+|. . ..++|++=. ...+.|+... . ..++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 345678889988 2 224666544 4567777611 1 123334431 234678999999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCC----ceeEEeeccc----------cceEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 003236 608 -SLSRLATSSADRTVRVWDTENPD----YSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672 (837)
Q Consensus 608 -dg~~Latgs~Dg~I~IWDl~~~~----~~~~~~~~h~----------~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t 672 (837)
+...||+....|...||++.... ..+.....+. .....|.|.++.+.+| .++ ...+.++|+++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lL-v~~-r~~l~~~d~~~ 233 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLL-VCN-RSKLMLIDFES 233 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEE-EEc-CCceEEEECCC
Confidence 46689999999999999992111 1111111112 2234778887766666 444 56799999998
Q ss_pred Ceeee---EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 673 GSCAG---VFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 673 ~~~i~---~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
..... .......|..+.-++.....+..-....|..+|+..
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 76533 222345688888887633333333447788888876
No 448
>PLN02153 epithiospecifier protein
Probab=93.92 E-value=6.7 Score=43.51 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=33.9
Q ss_pred CCCEEEEEECC-------CcEEEEeCCCCeEEEEecc---CCC---CeEEEEEcCCCCEEEEEeCC-----CeEEEEEcC
Q 003236 566 DGKLLATGGHD-------KKAVLWCTESFTVKSTLEE---HTQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDTE 627 (837)
Q Consensus 566 dg~~Lasgs~D-------g~I~VWd~~t~~~~~~l~~---h~~---~I~~l~fspdg~~Latgs~D-----g~I~IWDl~ 627 (837)
++++++.|+.+ ..+.+||+.+.+-...-.. ... ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45566666653 3578888877543321110 010 1222222 45667777653 357888888
Q ss_pred CCCc
Q 003236 628 NPDY 631 (837)
Q Consensus 628 ~~~~ 631 (837)
+...
T Consensus 110 t~~W 113 (341)
T PLN02153 110 KNEW 113 (341)
T ss_pred CCEE
Confidence 6543
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.85 E-value=0.74 Score=51.98 Aligned_cols=141 Identities=12% Similarity=0.135 Sum_probs=92.9
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC-------EEEEEEcCCeEEEEECCCCe-E--EEEE
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-------RILAAAIENYISILDVETQV-C--RLKL 720 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~-------~llags~dg~I~iwDl~s~~-~--~~~l 720 (837)
+...++..++....++-.|++.|+.+..+..+..+ -+.|.|..+ .-++|-++..|.-.|.+-.. . +...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 44445555666678888999999999999987777 778888532 24566677777777776432 1 1222
Q ss_pred cC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 721 QG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 721 ~~--h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
+. ......|..-. ..-|+++++ .|.|++||--.. .....+.+.+..|..+..+.+|++|++.|. ..|.+.|+
T Consensus 557 KdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 557 KDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred hhccccccccccccc-cCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 21 12223333322 345777777 889999996443 233445667788999999999998776654 46777776
No 450
>PHA02790 Kelch-like protein; Provisional
Probab=93.75 E-value=3.2 Score=48.56 Aligned_cols=144 Identities=8% Similarity=-0.016 Sum_probs=68.4
Q ss_pred CeEEEEEeCC--CcEEEEECCCCeeeeEEecCCCee-EEEEecCCCEEEEEEcC---CeEEEEECCCCeEEEE--EcCCC
Q 003236 653 EDLLCSCDNN--SEIRYWSINNGSCAGVFKCQSGAT-QMRFQPRLGRILAAAIE---NYISILDVETQVCRLK--LQGHK 724 (837)
Q Consensus 653 ~~llasgs~D--g~I~vwDl~t~~~i~~~~~~~~i~-sl~~sp~g~~llags~d---g~I~iwDl~s~~~~~~--l~~h~ 724 (837)
+.+++.|+.+ ..+..||..+++-...-....... .....-++..+++|+.+ ..+..||.++..-... .....
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 4566677653 457888877654332222222211 12223345555666654 3577888876532221 11111
Q ss_pred CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCC
Q 003236 725 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE 799 (837)
Q Consensus 725 ~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s 799 (837)
... +++ .-++++.+.| |.+.+||..+.. ...+.......... .++ .-+++..++||.+ ..|..||..+
T Consensus 399 ~~~-~~~-~~~~~IYv~G--G~~e~ydp~~~~-W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 399 YKS-CAL-VFGRRLFLVG--RNAEFYCESSNT-WTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ccc-eEE-EECCEEEEEC--CceEEecCCCCc-EeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence 111 222 2345555555 356778886642 12222222111122 222 2355556666543 3677888777
Q ss_pred CcEE
Q 003236 800 NKTL 803 (837)
Q Consensus 800 ~~~~ 803 (837)
++..
T Consensus 472 ~~W~ 475 (480)
T PHA02790 472 YSWN 475 (480)
T ss_pred CeEE
Confidence 6653
No 451
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=93.73 E-value=22 Score=44.81 Aligned_cols=169 Identities=14% Similarity=0.106 Sum_probs=92.4
Q ss_pred CcEEEEECCCCeeeeEEec--CCCeeEEEEec---------CCCEEEEEEc---------CCeEEEEECCC-----Ce--
Q 003236 663 SEIRYWSINNGSCAGVFKC--QSGATQMRFQP---------RLGRILAAAI---------ENYISILDVET-----QV-- 715 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp---------~g~~llags~---------dg~I~iwDl~s-----~~-- 715 (837)
..|.+.+..+++.+..+.. ...+.++++.. ...++++|.. -|.+.|||+-. ++
T Consensus 1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence 3455555555555544433 23344444321 1345666653 37899998632 21
Q ss_pred ---EEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 716 ---CRLKL--QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 716 ---~~~~l--~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
.++.+ +.-++.|..+|=. +| +|+++..-.|.||++........+..+ .-.+......--.++|++|.-..
T Consensus 1084 t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~GqKI~v~~l~r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQGQKIIVRKLDRDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMK 1158 (1366)
T ss_pred ccceeeeeehhhcccceEEEEEe-cc-EEEEccCcEEEEEEeccCCcceeeEEe---ccceeEEehhhhhhheehhhhhh
Confidence 11211 2345677666532 34 455666678999999544221222221 22233333333455677777777
Q ss_pred eEEEEECCCCc-EEEec---cCCCCeeEEEEeCCCC--EEEEEECCCcEEEe
Q 003236 791 TLELWNMTENK-TLTLS---AHDKLVSSLAASTVNG--MVASASHDKCVKIW 836 (837)
Q Consensus 791 ~I~IwDl~s~~-~~~l~---~h~~~V~sla~spdg~--~LaSgs~DG~I~IW 836 (837)
.|.+.-..... .+.+. ...-.+.++.|--||. +++++..|++|++|
T Consensus 1159 sisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1159 SISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVY 1210 (1366)
T ss_pred ceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEE
Confidence 77766554332 22222 2234577888877775 67788899999886
No 452
>PLN02193 nitrile-specifier protein
Probab=93.64 E-value=9.5 Score=44.47 Aligned_cols=192 Identities=6% Similarity=-0.031 Sum_probs=90.2
Q ss_pred CCCEEEEEeCC-------CeEEEEEcCCCCceeEEeec-ccc--c-eEEEEEcCCCCeEEEEEeCC-----CcEEEEECC
Q 003236 608 SLSRLATSSAD-------RTVRVWDTENPDYSLRTFTG-HST--T-VMSLDFHPSKEDLLCSCDNN-----SEIRYWSIN 671 (837)
Q Consensus 608 dg~~Latgs~D-------g~I~IWDl~~~~~~~~~~~~-h~~--~-V~sl~fspdg~~llasgs~D-----g~I~vwDl~ 671 (837)
++.+++.|+.+ ..+.+||+.+.........+ ... . -.+++.. ++.+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34556666643 24778888775543211111 000 0 1112222 34566677654 368889998
Q ss_pred CCeeeeEEec---CCC--eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEEEc-----CCCCCEEEEEEcCCC
Q 003236 672 NGSCAGVFKC---QSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSG 736 (837)
Q Consensus 672 t~~~i~~~~~---~~~--i~sl~~sp~g~~llags~d-----g~I~iwDl~s~~~~~~l~-----~h~~~V~sl~~spdg 736 (837)
+.+-...... ..+ -.+++ .-++..++.|+.+ ..+..||+.+.+-...-. ..... .+++. -++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~g 329 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQG 329 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECC
Confidence 7654432221 111 12222 2344555566543 357788887654321110 01111 12222 256
Q ss_pred CEEEEEe-C----CeEEEEEcCCCCCceeEEEee-cCCCceEEEEEeCCCCEEEEEEcC--------------CeEEEEE
Q 003236 737 EYLASVS-D----ELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVIGCY--------------ETLELWN 796 (837)
Q Consensus 737 ~~Lasgs-D----g~I~IwDl~s~~~~~~i~~~~-~~~~~I~sv~fspdg~~L~sgs~d--------------g~I~IwD 796 (837)
++++.++ + ..|.+||+.+.. ...+.... .........+..-+++.+++|+.. ..+.+||
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 6666555 4 468999988752 11221110 011111112223345566666642 2588999
Q ss_pred CCCCcEEEe
Q 003236 797 MTENKTLTL 805 (837)
Q Consensus 797 l~s~~~~~l 805 (837)
+.+.+...+
T Consensus 409 ~~t~~W~~~ 417 (470)
T PLN02193 409 TETLQWERL 417 (470)
T ss_pred cCcCEEEEc
Confidence 988876643
No 453
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=93.59 E-value=19 Score=42.33 Aligned_cols=246 Identities=12% Similarity=0.091 Sum_probs=121.1
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCe---EEEEeccC-CCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEeec
Q 003236 564 SPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h-~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
..++..++.+..+|.++...+.... .+..+ +. .....++++..++ .+|+.||.-|.=.++.+......+.....
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 4467788889999999888765433 12222 22 4556777777654 47888877554444444433332322233
Q ss_pred cccceEEEEEcCC---CC-------eEEEEEe--CCCcEEEEECCCC---eeeeEEecCCCeeEEEEecC----CCEEEE
Q 003236 639 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNG---SCAGVFKCQSGATQMRFQPR----LGRILA 699 (837)
Q Consensus 639 h~~~V~sl~fspd---g~-------~llasgs--~Dg~I~vwDl~t~---~~i~~~~~~~~i~sl~~sp~----g~~lla 699 (837)
.-++|.++++.+. +. .++++++ .+|.+++..-.-+ .........+ +..+-..+. +.+++.
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEE
Confidence 4578888888532 12 4555544 4677877633211 1222222222 444333332 345555
Q ss_pred EEcCCeEEEEECC---CCeEEEEEc--CC---CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeec-CCCc
Q 003236 700 AAIENYISILDVE---TQVCRLKLQ--GH---KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNK 770 (837)
Q Consensus 700 gs~dg~I~iwDl~---s~~~~~~l~--~h---~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~-~~~~ 770 (837)
+.. ..-.++.+. ....+..+. +. ...+.+-.+. +..++=.....|++.+.... ........ .+..
T Consensus 377 S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 377 SFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSI 450 (504)
T ss_dssp EES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS--
T ss_pred EcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCe
Confidence 554 444455442 233332221 11 2233333333 55566566667899987665 33333322 3444
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eec-----cCCCCeeEEEEeC
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST 819 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~-----~h~~~V~sla~sp 819 (837)
|..++.. +..++++..++.+.++.+...... ... .....|.|+...|
T Consensus 451 I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 451 IVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp -SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 4444444 356888888888999988777664 211 2567888888776
No 454
>PLN02193 nitrile-specifier protein
Probab=93.52 E-value=19 Score=42.03 Aligned_cols=174 Identities=7% Similarity=-0.033 Sum_probs=81.0
Q ss_pred CeEEEEEeCC-------CcEEEEECCCCeeeeEEe---cCC--CeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCe
Q 003236 653 EDLLCSCDNN-------SEIRYWSINNGSCAGVFK---CQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQV 715 (837)
Q Consensus 653 ~~llasgs~D-------g~I~vwDl~t~~~i~~~~---~~~--~i~sl~~sp~g~~llags~d-----g~I~iwDl~s~~ 715 (837)
+.+++.|+.+ ..+.+||+.+.+-...-. .+. ........-++..++.|+.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566666642 247788888755332111 011 11111222344555555543 468899988754
Q ss_pred EEE--EEc--CCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEe---ecCCCceEEEEEeCCCCE
Q 003236 716 CRL--KLQ--GHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 716 ~~~--~l~--~h~~~V~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~---~~~~~~I~sv~fspdg~~ 782 (837)
-.. ... .....-.+++. -++++++.|+ ++ .+.+||+.+.. ...+... ...... ..++. -+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~-~~~~~-~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGG-AGLEV-VQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCC-cEEEE-ECCcE
Confidence 322 111 01111122222 2455555554 32 46778876642 1111100 000111 12222 25566
Q ss_pred EEEEEcC----CeEEEEECCCCcEEEeccC----CCCeeEEEEeCCCCEEEEEECC
Q 003236 783 LLVIGCY----ETLELWNMTENKTLTLSAH----DKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 783 L~sgs~d----g~I~IwDl~s~~~~~l~~h----~~~V~sla~spdg~~LaSgs~D 830 (837)
+++++.+ ..|.+||+.+.+...+... .......+..-++++++.|+.+
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 6666655 4689999998877654322 1111112223356777777753
No 455
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=93.50 E-value=26 Score=43.64 Aligned_cols=261 Identities=11% Similarity=0.065 Sum_probs=135.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeE---------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--- 628 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~--- 628 (837)
-.+.++...+++-+.+|.|+-.+..+... ...++. .+.+..+........|+..+.+|.+...+...
T Consensus 490 edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~ 568 (800)
T TIGR01063 490 EDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPE 568 (800)
T ss_pred hhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcC
Confidence 34456667788888999988876544321 112222 34455555555666677777788776665432
Q ss_pred CC-----cee---EEeeccccceEEEEEcC-CCCeEEEEEeCCCcEEEEECCCCee-------eeEEecCCCeeEEEEec
Q 003236 629 PD-----YSL---RTFTGHSTTVMSLDFHP-SKEDLLCSCDNNSEIRYWSINNGSC-------AGVFKCQSGATQMRFQP 692 (837)
Q Consensus 629 ~~-----~~~---~~~~~h~~~V~sl~fsp-dg~~llasgs~Dg~I~vwDl~t~~~-------i~~~~~~~~i~sl~~sp 692 (837)
.. ..+ ..+.....-|.++.+.. +...+++..+.+|.++-.++..... ...+.....+..+....
T Consensus 569 ~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~~ 648 (800)
T TIGR01063 569 ASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLTS 648 (800)
T ss_pred CCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEeC
Confidence 11 011 11222223344455332 1223566777899999887654221 11222234455555555
Q ss_pred CCCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------
Q 003236 693 RLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------ 756 (837)
Q Consensus 693 ~g~~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------ 756 (837)
....++..+..|.+..+.+.. |.....+. ....|.++....++.+++..+ .|.++...+..-.
T Consensus 649 ~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~ 727 (800)
T TIGR01063 649 GDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG 727 (800)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC
Confidence 556788888888777665432 22222232 223455554444444455555 8877777654211
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEE
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVAS 826 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaS 826 (837)
.......+......+..+....+...++..+.+|.+..++...-... ..-...|..+.... +..++.
T Consensus 728 kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~~--gR~a~GVk~i~L~~-~D~vv~ 794 (800)
T TIGR01063 728 KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSEQ--GRNTQGVRLIRLDE-DDKLVS 794 (800)
T ss_pred cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCcc--ccCCCCeeeeeeCC-CCEEEE
Confidence 11222223333344555444445556888888888777776542221 12233466666643 334443
No 456
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=93.39 E-value=24 Score=42.79 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=82.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCc----EEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC------CCe
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKK----AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------DRT 620 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~----I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~------Dg~ 620 (837)
...+...+..+.|+|||..++..+.++. +++.+.. + .+..+...|....|++++..++.... |+.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~ 129 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGG 129 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCCc
Confidence 3456677889999999999988874332 3333433 2 33445667888899998888777211 222
Q ss_pred -------EEEEEcCCC-Cc----------eeEEeeccccceEEEEEcCCCCeEEEEEeCC---C---cEEEEECCCCeee
Q 003236 621 -------VRVWDTENP-DY----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S---EIRYWSINNGSCA 676 (837)
Q Consensus 621 -------I~IWDl~~~-~~----------~~~~~~~h~~~V~sl~fspdg~~llasgs~D---g---~I~vwDl~t~~~i 676 (837)
+.+|....+ .. ...........+....+++++..++.+...+ . ...++...++...
T Consensus 130 ~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (620)
T COG1506 130 DHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELE 209 (620)
T ss_pred eeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceE
Confidence 333433322 11 1112223344566666666555444332222 1 2233333455555
Q ss_pred eEEecCCCeeEEEEecCCCEEEEEEc
Q 003236 677 GVFKCQSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 677 ~~~~~~~~i~sl~~sp~g~~llags~ 702 (837)
........+..+.+.++++.++..+.
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEecc
Confidence 55555566888889998886555443
No 457
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.37 E-value=9 Score=43.20 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=9.7
Q ss_pred cEEEEECCCCeeee
Q 003236 664 EIRYWSINNGSCAG 677 (837)
Q Consensus 664 ~I~vwDl~t~~~i~ 677 (837)
.|.+||..+.+-..
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889987765443
No 458
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=8.7 Score=45.84 Aligned_cols=181 Identities=12% Similarity=0.045 Sum_probs=87.5
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee--EEeeccccceEEEEEcCCCCe
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~--~~~~~h~~~V~sl~fspdg~~ 654 (837)
-.|+||++. |..+..+.-....+..+.|+.+. .|++...||+++||++....... ..+......|..+.|..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 458888854 45554443333478899999765 46666799999999987533211 1112222334444444443
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEec-C-CCe--eEEEEecCCC---EEEEEEcCCeEEEEECCCC-eEEEEEcCCCCC
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKC-Q-SGA--TQMRFQPRLG---RILAAAIENYISILDVETQ-VCRLKLQGHKNQ 726 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~-~-~~i--~sl~~sp~g~---~llags~dg~I~iwDl~s~-~~~~~l~~h~~~ 726 (837)
+++-. .+|.|.+.+-.....++.... + ... .|-...+++. .++.....-...++-.+.. .....+......
T Consensus 140 Vavlt-~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLT-VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEe-cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCce
Confidence 23222 244444332221211222211 1 111 2222222211 1111110000111111111 111122222356
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003236 727 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 765 (837)
+..+..||+..+|+.-. +|.|.+-+++.. .++.++.
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~---~~lce~~ 255 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLS---QILCEFN 255 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchh---hhhhccC
Confidence 77889999999999877 888888887665 4444444
No 459
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.12 E-value=19 Score=41.05 Aligned_cols=267 Identities=11% Similarity=0.107 Sum_probs=131.2
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEc---C--CCCEEEEEECCCcEE
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS---P--DGKLLATGGHDKKAV 580 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fS---p--dg~~Lasgs~Dg~I~ 580 (837)
...+..||..+.++++........... +-.-..-..+|..|..- + +...||+ -.-.++.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~---------------lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~ 100 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPED---------------LLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLS 100 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCcc---------------EEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEE
Confidence 357788999999999977443211100 11111223456666543 2 2224444 4567788
Q ss_pred EEeCCC--Ce-------EEEEeccCC--CCeEEEEEcC----C-CCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceE
Q 003236 581 LWCTES--FT-------VKSTLEEHT--QWITDVRFSP----S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM 644 (837)
Q Consensus 581 VWd~~t--~~-------~~~~l~~h~--~~I~~l~fsp----d-g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~ 644 (837)
||.+.. +. .+..+..|. .....+++-| . ..+|++-+.||.+.+|+-+.-. ...+...---.-
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llPg 178 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLPG 178 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCCc
Confidence 887621 11 112222232 2223333332 2 3678999999999999987522 222222223334
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCC--------------------C---eeeeEEecCCCeeEEEEec---CCCEEE
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN--------------------G---SCAGVFKCQSGATQMRFQP---RLGRIL 698 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t--------------------~---~~i~~~~~~~~i~sl~~sp---~g~~ll 698 (837)
.++|.+..+ .|++++.+..|..|.... + ...+.+.....+..+.... ....|+
T Consensus 179 Pl~Y~~~tD-sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~Iv 257 (418)
T PF14727_consen 179 PLCYCPRTD-SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIV 257 (418)
T ss_pred CeEEeecCC-EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEE
Confidence 567777655 445777677888775421 1 1223344445555544433 333344
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEE-E----cCCCC----EEEEEeCCeEEEEEcCCCCCceeEEEeecCCC
Q 003236 699 AAAIENYISILDVETQVCRLKLQGHKNQVHSVC-W----NTSGE----YLASVSDELVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~-~----spdg~----~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
+-+ +..+.+++.. |......+ .+....|++ | ..++. +++++.++.+.||.=. ..+........
T Consensus 258 vLg-er~Lf~l~~~-G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~-----~L~WsA~l~~~ 329 (418)
T PF14727_consen 258 VLG-ERSLFCLKDN-GSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT-----TLVWSAQLPHV 329 (418)
T ss_pred EEe-cceEEEEcCC-CeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC-----eEEEecCCCCC
Confidence 443 3555555553 44333333 222222222 2 11222 4444448899988532 22222222122
Q ss_pred c--eEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 770 K--FHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 770 ~--I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
+ +..+.|..-...|++-+.+|.|.+-=+-+
T Consensus 330 PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 330 PVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred CEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 2 22233333445677777788777654433
No 460
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=3.3 Score=42.05 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=100.0
Q ss_pred CCCEEEEEeC--CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCe
Q 003236 608 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA 685 (837)
Q Consensus 608 dg~~Latgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i 685 (837)
++.++.+.+. ...|++||+.+++........ ...+..=-...-++.+..-.-.+|.-..+|.++.+++..+...+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4555655554 347999999987753332222 1122211112223445555667888999999999999988877766
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE----EEcC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCce
Q 003236 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRL----KLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE 759 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~----~l~~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~ 759 (837)
..++. ++..++.+.....+..-|.++-.... ++.+ .-..++.+.|- +|.+.+-.- +..|...|..+++...
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 66554 45567777777788887876543322 2222 11223344443 555555444 5555555665552211
Q ss_pred eE---------EEeecCCCceEEEEEeCCCCEEEEEE
Q 003236 760 CI---------HELSCTGNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 760 ~i---------~~~~~~~~~I~sv~fspdg~~L~sgs 787 (837)
.+ .....+.+..+.+++.|++..|+..+
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11 11122345678889999886555544
No 461
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.09 E-value=2.7 Score=39.70 Aligned_cols=118 Identities=12% Similarity=0.055 Sum_probs=76.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCce------eEEeeccccceEEEEEcC----CCCeEEEEEeCCCcEEEEECC
Q 003236 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYS------LRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSIN 671 (837)
Q Consensus 602 ~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~------~~~~~~h~~~V~sl~fsp----dg~~llasgs~Dg~I~vwDl~ 671 (837)
.-+|......|+.++.-|.|.|++....... -..+......|++|+-.+ ++..+|+.|+ ...|..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3456666667888888999999987643211 112233456777776443 2345666666 5679999999
Q ss_pred CCeeeeEEecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 672 NGSCAGVFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 672 t~~~i~~~~~~~~i~sl~~sp~---g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
...-+.......++.++.+-.- ..-++..+.+..|.-||.+-.+...+.
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 8887777777788888877432 234566666677777777655555443
No 462
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=93.06 E-value=0.027 Score=59.83 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=0.0
Q ss_pred HHhhhcccccCCCC
Q 003236 121 QQQQRRDSTQHLND 134 (837)
Q Consensus 121 qq~q~~~~~~~~~~ 134 (837)
||+++..+.+++||
T Consensus 371 QQ~qQ~qQq~qmng 384 (468)
T PF11498_consen 371 QQQQQQQQQHQMNG 384 (468)
T ss_dssp --------------
T ss_pred HHHHhhhhhhhccc
Confidence 34444455556776
No 463
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.99 E-value=0.055 Score=64.21 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=55.6
Q ss_pred CCcEEEEeCCCCeE-EEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC--CC----ceeEEeeccccceEEEE
Q 003236 576 DKKAVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN--PD----YSLRTFTGHSTTVMSLD 647 (837)
Q Consensus 576 Dg~I~VWd~~t~~~-~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~--~~----~~~~~~~~h~~~V~sl~ 647 (837)
.+.|++-+..+.-. -..+++..+.|..+.|-. +...++ -.-|.+.|||++- ++ ..++........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 45677776554321 133567788888888854 222222 2346788998763 22 22344444445555566
Q ss_pred EcCC--CCeEEEEEeCCCcEEEEECCCC
Q 003236 648 FHPS--KEDLLCSCDNNSEIRYWSINNG 673 (837)
Q Consensus 648 fspd--g~~llasgs~Dg~I~vwDl~t~ 673 (837)
|.|- ....++.+..+++|++..+.+.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra 215 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRA 215 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechH
Confidence 6652 2346667777888888776643
No 464
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=92.93 E-value=17 Score=39.78 Aligned_cols=234 Identities=14% Similarity=0.016 Sum_probs=113.3
Q ss_pred CCCEEEEEECCCcEEEEeCCC--CeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCc-----------
Q 003236 566 DGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY----------- 631 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~----------- 631 (837)
++++|+.|+++|...+ ++.. .+....+ +...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~-~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVL-NISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEE-EcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 3468999999885544 4554 3344444 456899999998777666654 334599999842111
Q ss_pred ---eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeeEE---e--cCCCeeEEEEecC--CCEE
Q 003236 632 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVF---K--CQSGATQMRFQPR--LGRI 697 (837)
Q Consensus 632 ---~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~---~--~~~~i~sl~~sp~--g~~l 697 (837)
.......|......+........+++++....+|.++..... ...+.+ . .+..+..+..++. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122344333333333222223334444566666544321 112111 1 1222333333332 3466
Q ss_pred EEEEcCCeEEEEECCC--CeE-----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 698 LAAAIENYISILDVET--QVC-----RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 698 lags~dg~I~iwDl~s--~~~-----~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
.+|+..+...++++.. ... -...........++..-+++.+|+ +-|....+.|...... .....+. -...
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~-~r~~~l~-w~~~ 245 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRR-SRNPILH-WEFM 245 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECcEEEEEeCCCCcc-ccceEEE-cCCc
Confidence 6776653344444422 100 000111110233333344555554 4455555556543111 1111111 2344
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccC
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH 808 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h 808 (837)
..++++.. ++|++... ..|.|+++.+++.+....+
T Consensus 246 p~~~~~~~--pyll~~~~-~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 246 PESFAYHS--PYLLAFHD-NGIEIRSIKTGELLQELAD 280 (302)
T ss_pred ccEEEEEC--CEEEEEcC-CcEEEEECCCCceEEEEec
Confidence 56677763 56776654 4599999999987754443
No 465
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=92.88 E-value=24 Score=41.47 Aligned_cols=225 Identities=13% Similarity=0.128 Sum_probs=111.4
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeecc-ccceEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCeeeeEEec
Q 003236 606 SPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGH-STTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKC 681 (837)
Q Consensus 606 spdg~~Latgs~Dg~I~IWDl~~~~~-~~~~~~~h-~~~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~~i~~~~~ 681 (837)
..++..++.+..+|.++...+..... ......+. .....++++..++..+++.|+. |+.+..|....-+.+..+..
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 34677899999999999988775431 12222223 5566778887766335555554 55666666555666677777
Q ss_pred CCCeeEEEEecC----CC------EEEEEEc---CCeEEEEECCCCeE--EEEEcCCCCCEEEE---EEcC-CCCEEEEE
Q 003236 682 QSGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGHKNQVHSV---CWNT-SGEYLASV 742 (837)
Q Consensus 682 ~~~i~sl~~sp~----g~------~llags~---dg~I~iwDl~s~~~--~~~l~~h~~~V~sl---~~sp-dg~~Lasg 742 (837)
-+++..+++.+. .. .+++++. +|.++++.-.-+-. ........+ +..+ .... ++.+|+.+
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEE
Confidence 788988888642 22 6676664 57888874322211 222222222 4443 3222 25677777
Q ss_pred eCCeEEEEEcCCCCCceeEEE-----eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-e-ccCCCCeeEE
Q 003236 743 SDELVRVWSIGSGSKGECIHE-----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-SAHDKLVSSL 815 (837)
Q Consensus 743 sDg~I~IwDl~s~~~~~~i~~-----~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l-~~h~~~V~sl 815 (837)
....-+|+.+........+.. +......+.+..+. +..++=.... .|++.+...++... + ......|.+.
T Consensus 378 ~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a 454 (504)
T PF10433_consen 378 FPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAA 454 (504)
T ss_dssp ESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEE
T ss_pred cCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEE
Confidence 766667777742111122211 11112222222222 3334433333 58888887777662 2 2344456555
Q ss_pred EEeCCCCEEEEEECCCcEEEe
Q 003236 816 AASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 816 a~spdg~~LaSgs~DG~I~IW 836 (837)
++. +.+++.+-.++.+.++
T Consensus 455 ~~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 455 SIN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp EES--SSEEEEEE-TTEEEEE
T ss_pred EEC--CCEEEEEEeCCcEEEE
Confidence 554 3556666566666554
No 466
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.78 E-value=4.2 Score=48.53 Aligned_cols=111 Identities=11% Similarity=0.149 Sum_probs=68.4
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEc--CCCCEEEEEe-CCeEEEEEcC-----C-
Q 003236 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWN--TSGEYLASVS-DELVRVWSIG-----S- 754 (837)
Q Consensus 685 i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~s--pdg~~Lasgs-Dg~I~IwDl~-----s- 754 (837)
+..+.-+.-++..++-.....+.|||.+.+....... ...+.|.++.|. |++..+++.+ ...|.+|.-. .
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344444444444444444689999999886544332 357789999995 5777776666 8889988532 1
Q ss_pred CCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 755 GSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 755 ~~~~~~i~~~---~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
+.....+..+ .....+|.+..|.++|..++ |+ ++.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~s-GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GS-GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEE-Ee-CCEEEEECC
Confidence 1111233332 22346799999999996333 33 446888874
No 467
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.69 E-value=22 Score=43.56 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=54.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 677 (837)
-.|..|.++++|++|+..+..| |.|-.+.........+.+....|.|=.+.-+ ..++ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~------------------ 143 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TS------------------ 143 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cC------------------
Confidence 3588889999999999888766 4444443211001112222223333222211 1122 11
Q ss_pred EEecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCC
Q 003236 678 VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVETQ 714 (837)
Q Consensus 678 ~~~~~~~i~sl~~sp~---g~~llags~dg~I~iwDl~s~ 714 (837)
.....|..+.|+|. +..|++-+.|+.|++||+...
T Consensus 144 --~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 --NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 11245777888885 578888899999999998653
No 468
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.69 E-value=13 Score=41.31 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=22.7
Q ss_pred eEEEEECCCCcEEEeccCCCCe-eEEEEeCCCCEEEEEECC
Q 003236 791 TLELWNMTENKTLTLSAHDKLV-SSLAASTVNGMVASASHD 830 (837)
Q Consensus 791 ~I~IwDl~s~~~~~l~~h~~~V-~sla~spdg~~LaSgs~D 830 (837)
.+.+||..+.+.........+. .+.+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccC
Confidence 4678888776654332222211 222344578888888765
No 469
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=92.66 E-value=27 Score=41.53 Aligned_cols=200 Identities=13% Similarity=0.065 Sum_probs=109.8
Q ss_pred CeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC----cEEEEE
Q 003236 599 WITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWS 669 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~-----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~vwD 669 (837)
.+-.++.+||.+++|-+-. .-++++-|+.++......+. +...+++|.+|+..++++...++ .|....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence 3556778888888876533 34789999998775333333 35678899999998988877654 233333
Q ss_pred CCC--CeeeeEEecCC--CeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEE
Q 003236 670 INN--GSCAGVFKCQS--GATQMRFQPRLGRILAAAIE---NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 670 l~t--~~~i~~~~~~~--~i~sl~~sp~g~~llags~d---g~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~La 740 (837)
+.+ ..-...+.... -..++.-+....+|+....+ +.+++++...... ........+--..+. ..+.+++
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~e--h~~d~f~ 284 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVE--HGGDRFY 284 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeee--ecCcEEE
Confidence 333 22222222222 23344445556676666543 5688888775422 222211111111221 1233333
Q ss_pred E-Ee-CC-eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEE
Q 003236 741 S-VS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL 803 (837)
Q Consensus 741 s-gs-Dg-~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~ 803 (837)
. .. +| ..+|+..........-..+..|...+.--.|+--..+|+....++ .|++++..++...
T Consensus 285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~ 353 (682)
T COG1770 285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER 353 (682)
T ss_pred EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence 3 33 55 556665443111122334455666666556666667777776655 7888888776654
No 470
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.59 E-value=19 Score=39.70 Aligned_cols=143 Identities=12% Similarity=0.166 Sum_probs=82.6
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCc------EEEEECCC--C--eee---eEE--ecC-C--------CeeEEEEecCCCE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSE------IRYWSINN--G--SCA---GVF--KCQ-S--------GATQMRFQPRLGR 696 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~------I~vwDl~t--~--~~i---~~~--~~~-~--------~i~sl~~sp~g~~ 696 (837)
+.+..|.+.+++..++ +.+.+|. ++.+++.. + ..+ ... ... + ...++++.+++.+
T Consensus 20 GGlSgl~~~~~~~~~~-avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFY-AVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEE-EEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 5577888886555444 4444665 55555543 1 111 111 111 1 3447888667666
Q ss_pred EEEEEcC------CeEEEEECCCCeEEEEEc---------------CCCCCEEEEEEcCCCCEEEEEe------CC--e-
Q 003236 697 ILAAAIE------NYISILDVETQVCRLKLQ---------------GHKNQVHSVCWNTSGEYLASVS------DE--L- 746 (837)
Q Consensus 697 llags~d------g~I~iwDl~s~~~~~~l~---------------~h~~~V~sl~~spdg~~Lasgs------Dg--~- 746 (837)
+++.-.+ ..|..++.. +.....+. .....+.+|+++|+|..|+++. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 6666666 789999877 54443331 1344688999999999665543 22 2
Q ss_pred ------EEEEEcCCCC----CceeEEEeec-----CCCceEEEEEeCCCCEEEE
Q 003236 747 ------VRVWSIGSGS----KGECIHELSC-----TGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 747 ------I~IwDl~s~~----~~~~i~~~~~-----~~~~I~sv~fspdg~~L~s 785 (837)
++|+.+.... .......+.. ....+..+.+.+++++|+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 5565554322 1122333332 4678899999999986654
No 471
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.56 E-value=0.072 Score=63.28 Aligned_cols=116 Identities=10% Similarity=0.137 Sum_probs=68.3
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCC--CCeEE-----EEeccCCCCeEEEEEcC---CCCEEEEEeCC
Q 003236 550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVK-----STLEEHTQWITDVRFSP---SLSRLATSSAD 618 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~--t~~~~-----~~l~~h~~~I~~l~fsp---dg~~Latgs~D 618 (837)
.+++-.+.|-.+.|-. +...++ -.-|.+.||+++ .|+.. .........+.-|.|+| +..++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3456667777777754 222222 223678899875 33332 22222333445555655 56778888888
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEE-----------EcCCCCeEEEEEeCCCcEEEEEC
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD-----------FHPSKEDLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~-----------fspdg~~llasgs~Dg~I~vwDl 670 (837)
++|++.+++... ...+.+|...+..++ .+|||. +|+....||.+++|.+
T Consensus 205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQI 264 (1283)
T ss_pred CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeee
Confidence 999998877543 244555776665554 467765 4455566777777654
No 472
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.47 E-value=11 Score=41.44 Aligned_cols=107 Identities=8% Similarity=0.088 Sum_probs=52.7
Q ss_pred CCCEEEEEECC-----CcEEEEeCCCCeE---EEEeccCCCCe--EEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCC
Q 003236 566 DGKLLATGGHD-----KKAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD 630 (837)
Q Consensus 566 dg~~Lasgs~D-----g~I~VWd~~t~~~---~~~l~~h~~~I--~~l~fspdg~~Latgs~-----Dg~I~IWDl~~~~ 630 (837)
++.+++.|+.+ ..+..||+.+.+. ...+..-.... .+++. -++++.+.|+. ...+.+||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56677777754 3566777766543 12221111111 12222 24566666664 2468888988765
Q ss_pred ceeEE-eeccccceEEEEEcCCCCeEEEEEeCCC----cEEEEECCCCee
Q 003236 631 YSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSC 675 (837)
Q Consensus 631 ~~~~~-~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~vwDl~t~~~ 675 (837)
..... +.... .....+...+ +.+++.|+.++ .+.+||+.+.+-
T Consensus 151 W~~~~~~p~~~-r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGEP-RVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCCC-CCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCee
Confidence 42221 11111 1111211222 45666776553 356888887653
No 473
>PRK05560 DNA gyrase subunit A; Validated
Probab=92.45 E-value=36 Score=42.47 Aligned_cols=255 Identities=11% Similarity=0.045 Sum_probs=132.8
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeE---------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---CC
Q 003236 562 HFSPDGKLLATGGHDKKAVLWCTESFTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NP 629 (837)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---~~ 629 (837)
.+-++...+++-+.+|.|+--++..... ...++. .+.+..+........|+..+..|.+....+. ..
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4455677888888999888876543221 112222 2345555555556667777778877666543 21
Q ss_pred C-----cee---EEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEEEECCCC-------eeeeEEecCCCeeEEEEecC
Q 003236 630 D-----YSL---RTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPR 693 (837)
Q Consensus 630 ~-----~~~---~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~-------~~i~~~~~~~~i~sl~~sp~ 693 (837)
. ..+ ..+.....-|.++.+... ....++..+.+|.++-.++..- .....+.....+..+.....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 1 111 112222333445555421 2335667788998887766432 22223333444555555555
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEE-EEEcCCCCEEEEEe-CCeEEEEEcCCC---C---
Q 003236 694 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-DELVRVWSIGSG---S--- 756 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~s-l~~spdg~~Lasgs-Dg~I~IwDl~s~---~--- 756 (837)
...++..+..|.+..+.+.. |.....+.. ...|.+ +.+.+++.+++..+ .|.++...+..- .
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 67788888888777766532 222223322 233444 34444433555555 888887765321 1
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCC
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 820 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spd 820 (837)
.......+......+..+........+++.+.+|.+..++...-.. .......|..+.+..+
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI~~--~gR~a~GVk~I~L~~~ 792 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEISI--TGRNTQGVRLIRLDEG 792 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHCCc--cccCCCCeeeEecCCC
Confidence 1122223333234444444334445577778888777777654222 1223345666666443
No 474
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.26 E-value=5.7 Score=40.35 Aligned_cols=171 Identities=9% Similarity=0.060 Sum_probs=90.5
Q ss_pred CCCEEEEEEC--CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEeeccccc
Q 003236 566 DGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTT 642 (837)
Q Consensus 566 dg~~Lasgs~--Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~~h~~~ 642 (837)
+|.++.+.+. ...|++||+.+++.+....-....+..=-...-+.++. ..-.||...++|.++-+. +..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~-lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE-LGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh-hcccc-cCCc
Confidence 4556666553 34799999999888765432211111111111122332 233578888999887443 22222 2334
Q ss_pred eEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CC---CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QS---GATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 643 V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~---~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
=+.++. |+..++ .++...+++.-|.++.....++.. .. .++.+.|. +|..++-.-.+..|...|..+++.
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 455554 345455 343345677777766544443332 11 22333443 233333344456677777777776
Q ss_pred EEEEc------------CCCCCEEEEEEcCCCC-EEEEE
Q 003236 717 RLKLQ------------GHKNQVHSVCWNTSGE-YLASV 742 (837)
Q Consensus 717 ~~~l~------------~h~~~V~sl~~spdg~-~Lasg 742 (837)
+..+. .|.+-.+.|++.|++. ++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 65443 2445677899999874 44444
No 475
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.11 E-value=4.5 Score=48.76 Aligned_cols=101 Identities=9% Similarity=0.145 Sum_probs=66.6
Q ss_pred CCeEEEEEeCCCcEEEEECCC-------C-------------eeeeEEecCCCeeEEEEe--cCCCEEEEEEcCCeEEEE
Q 003236 652 KEDLLCSCDNNSEIRYWSINN-------G-------------SCAGVFKCQSGATQMRFQ--PRLGRILAAAIENYISIL 709 (837)
Q Consensus 652 g~~llasgs~Dg~I~vwDl~t-------~-------------~~i~~~~~~~~i~sl~~s--p~g~~llags~dg~I~iw 709 (837)
+..+|+.|.+||.|.+|.+++ . ++...+..+..+..++++ ...+.|++++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 456888999999999996521 1 122334446678888988 666777777777777777
Q ss_pred ECCCC--e-EEEEEcCCCCCEEEEEEcCCC-----C-EEEEEe-CCeEEEEEc
Q 003236 710 DVETQ--V-CRLKLQGHKNQVHSVCWNTSG-----E-YLASVS-DELVRVWSI 752 (837)
Q Consensus 710 Dl~s~--~-~~~~l~~h~~~V~sl~~spdg-----~-~Lasgs-Dg~I~IwDl 752 (837)
-.... + ....-..|...|-+|+|.++. . .|++++ .|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 54431 1 111111266789999997643 2 666777 998888887
No 476
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.98 E-value=0.46 Score=36.48 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
...|.+++|+|...+||.++.||.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999994
No 477
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.94 E-value=2.7 Score=47.73 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=88.4
Q ss_pred CCCEEEE-EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC--------CEEEEEeCCeEEEEEcCCCCCceeEEE
Q 003236 693 RLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG--------EYLASVSDELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 693 ~g~~lla-gs~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg--------~~LasgsDg~I~IwDl~s~~~~~~i~~ 763 (837)
+...|+. ++....++-.|++.|+.+..+..|... -+.|.|+. ..|+..++..|.-.|.+-......+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 3344443 344568888899999999999877665 46777743 356666777776667664432111111
Q ss_pred ee--cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 764 LS--CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 764 ~~--~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
.+ ...+.+.+..- ....+|++++..|.|++||.-..+.. .+.+....|..|..+.+|++|++.|..
T Consensus 556 sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 556 SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 11 11233333333 34458999999999999996554433 566778899999999999987776653
No 478
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=91.90 E-value=29 Score=41.98 Aligned_cols=146 Identities=12% Similarity=0.149 Sum_probs=78.9
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCe--EEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEE-----eCCCc-
Q 003236 593 LEEHTQWITDVRFSPSLSRLATSSADRT--VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC-----DNNSE- 664 (837)
Q Consensus 593 l~~h~~~I~~l~fspdg~~Latgs~Dg~--I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasg-----s~Dg~- 664 (837)
...+...+..+.|+|++..++..+.++. ..+|-+.... .+..+...|....|++++..+++.. ..++.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~ 130 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGD 130 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEEEecccccccCCce
Confidence 3456778899999999999998874332 3444443221 3344556677888888887666511 11222
Q ss_pred ------EEEEECCCC-eeee------------EEecCCCeeEEEEecCCCEEEEEEcCC-------eEEEEECCCCeEEE
Q 003236 665 ------IRYWSINNG-SCAG------------VFKCQSGATQMRFQPRLGRILAAAIEN-------YISILDVETQVCRL 718 (837)
Q Consensus 665 ------I~vwDl~t~-~~i~------------~~~~~~~i~sl~~sp~g~~llags~dg-------~I~iwDl~s~~~~~ 718 (837)
+.+|....+ +... .......+....+.+++..++....+. ...++...+ ..+.
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 209 (620)
T COG1506 131 HLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGN-GELE 209 (620)
T ss_pred eeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCC-CceE
Confidence 333333222 1111 111123345555555556555544432 123333323 3344
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 719 KLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 719 ~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
.+......+..+.|.++++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~gk~~~~~~ 234 (620)
T COG1506 210 SLTPGEGSISKLAFDADGKSIALLG 234 (620)
T ss_pred EEcCCCceeeeeeeCCCCCeeEEec
Confidence 4444556688899999998555543
No 479
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.71 E-value=25 Score=38.97 Aligned_cols=24 Identities=8% Similarity=0.084 Sum_probs=15.7
Q ss_pred CCCEEEEEeCC-----------CeEEEEEcCCCCc
Q 003236 608 SLSRLATSSAD-----------RTVRVWDTENPDY 631 (837)
Q Consensus 608 dg~~Latgs~D-----------g~I~IWDl~~~~~ 631 (837)
++++.+.|+.+ ..+..||..+...
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W 97 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSW 97 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEE
Confidence 56677777653 2477788876554
No 480
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.67 E-value=0.056 Score=60.48 Aligned_cols=148 Identities=12% Similarity=0.128 Sum_probs=104.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV 678 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~ 678 (837)
......|.+.+.-++.++.+-.|..||-.... ......++....++|+.+++.+++.+...+.+.+||+.+...-..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~---~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQV---ILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcce---ecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 34456678877778888889889999876432 122223456778899998888888888899999999986432211
Q ss_pred -EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003236 679 -FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV 749 (837)
Q Consensus 679 -~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~I 749 (837)
+.....-.-+.|++....++.+...+.+.||+..+.+.+.....|...+++++|.+.+..+..+.|..+.+
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v 184 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSV 184 (615)
T ss_pred hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHH
Confidence 11111222267888888888998899999999888766655555889999999998877665544554433
No 481
>PRK05560 DNA gyrase subunit A; Validated
Probab=91.63 E-value=44 Score=41.75 Aligned_cols=226 Identities=9% Similarity=0.037 Sum_probs=108.2
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCc--------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC---CC--
Q 003236 606 SPSLSRLATSSADRTVRVWDTENPDY--------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN-- 672 (837)
Q Consensus 606 spdg~~Latgs~Dg~I~IWDl~~~~~--------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t-- 672 (837)
-++...+++.+.+|.|+--++.+-.. ....+.. ...+..+........+++..+ .|.+....+ ..
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs-~Grv~~l~v~~iP~~~ 572 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTN-RGRVYRLKVYEIPEAS 572 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEec-CCeEEEEEhhhCcCCC
Confidence 34566777888888888776543110 0111111 233333333344454554443 566655533 22
Q ss_pred ----Ceeee---EEecCCCee-EEEEe--cCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEE-cC
Q 003236 673 ----GSCAG---VFKCQSGAT-QMRFQ--PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCW-NT 734 (837)
Q Consensus 673 ----~~~i~---~~~~~~~i~-sl~~s--p~g~~llags~dg~I~iwDl~s-------~~~~~~l~~h~~~V~sl~~-sp 734 (837)
|..+. .+.....|. ++.+. ++...++..+.+|.|+-.++.. +.....+... +.+..+.. +.
T Consensus 573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~-D~lv~v~~~~~ 651 (805)
T PRK05560 573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEG-DELIGVRLTDG 651 (805)
T ss_pred cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCC-CEEEEEEEeCC
Confidence 22221 112223333 34443 2567899999999988776543 2233344433 33433333 33
Q ss_pred CCCEEEEEeCCeEEEEEcCCC---C---CceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEECCCC-------
Q 003236 735 SGEYLASVSDELVRVWSIGSG---S---KGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMTEN------- 800 (837)
Q Consensus 735 dg~~LasgsDg~I~IwDl~s~---~---~~~~i~~~~~~~~~I~sv-~fspdg~~L~sgs~dg~I~IwDl~s~------- 800 (837)
+..+++.++.|.+..+.+..- . .+.....+.. +..|..+ .+.++..+++..+..|.++...+..-
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 344555555776555554321 0 1122222322 3334444 44444447888898898877764321
Q ss_pred c-EE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 801 K-TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 801 ~-~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
+ .. .+....+.+..+........++..+.+|.+..
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lr 768 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIR 768 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEE
Confidence 1 11 22232334444333333344555666776544
No 482
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.58 E-value=12 Score=42.08 Aligned_cols=151 Identities=15% Similarity=0.123 Sum_probs=86.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce---e
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS---L 633 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~---~ 633 (837)
.+-|...++.|++ ...|.+.=|-++.. -++.......++|.+|.|++|.+.||+--.|++|.+++....+.. .
T Consensus 27 gvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 3445543444333 33455556654322 122222345679999999999999999999999999998432221 1
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--eeeeEEecCCCeeEEEEecCCCEEEEEEc--CCeEEEE
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKCQSGATQMRFQPRLGRILAAAI--ENYISIL 709 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~--~~i~~~~~~~~i~sl~~sp~g~~llags~--dg~I~iw 709 (837)
.+....+..|..++|....+ +.+.. +..+-+|-+... ....+-.+.-.|.-..|.++.+.++.++. .+.+.-+
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e-~A~i~--~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTE-IAFIT--DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHhccCcceeEEEEEecCee-EEEEe--cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 22333445688999987633 33333 233555554322 22222223456777888888776555443 3455545
Q ss_pred ECCCC
Q 003236 710 DVETQ 714 (837)
Q Consensus 710 Dl~s~ 714 (837)
-++++
T Consensus 183 ~~~~~ 187 (657)
T KOG2377|consen 183 HFRAG 187 (657)
T ss_pred EEeec
Confidence 55544
No 483
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=4.8 Score=51.08 Aligned_cols=228 Identities=12% Similarity=0.098 Sum_probs=109.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
....++|+|.-.++|.|+.+|.|.+|-...-+.......-. ..+..+.|......+.....+..+.+|.......
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~---- 112 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG---- 112 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce----
Confidence 45678999999999999999999999765433332221111 1222222222222334444555666666553221
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEE-EEecCCCEEEEEEcCCeEEEEECC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQM-RFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl-~~sp~g~~llags~dg~I~iwDl~ 712 (837)
..+...+++....+--. ++.+ ..+.+++||..-......... ....... .+.+..-.+..--.+-.-.++-+.
T Consensus 113 -~~~~~~~~~~~~~~~~~--~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 188 (993)
T KOG1983|consen 113 -VFLKQEITSFVTDPPPD--WLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLP 188 (993)
T ss_pred -eecCCcceeccCCCCcc--hhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeecc
Confidence 11223333333322211 2344 677888887753221111100 0000000 000000000000000000111111
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003236 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 713 s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I 792 (837)
... ..+..+..++.+..+......+.....+.+-+|+..... ....+.... ..+..++..++++-.|+.+
T Consensus 189 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 189 DAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY---VQSAYLPNG-----QLESRDGSHFVSYHTDGSY 258 (993)
T ss_pred ccc--ccccccccccceeeeecCCCcceeeeeeeeeehhccccc---chhhccccc-----ccCccCCceEEEEEecCCE
Confidence 001 222235566666666666666666666777777655431 111111111 1227888999999999999
Q ss_pred EEEECCCCcE
Q 003236 793 ELWNMTENKT 802 (837)
Q Consensus 793 ~IwDl~s~~~ 802 (837)
.+||...++.
T Consensus 259 ~fWd~s~g~~ 268 (993)
T KOG1983|consen 259 AFWDVSSGKL 268 (993)
T ss_pred EeeecCCCce
Confidence 9999988754
No 484
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.47 E-value=23 Score=38.24 Aligned_cols=194 Identities=9% Similarity=0.077 Sum_probs=108.6
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECC------CC-eeeeEEec------CCCeeEEEEecCCC------------E
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN------NG-SCAGVFKC------QSGATQMRFQPRLG------------R 696 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~------t~-~~i~~~~~------~~~i~sl~~sp~g~------------~ 696 (837)
.-+.|+++|.+. +.++....+...+||.. .. ..+..+.. ....+.+.|+.... .
T Consensus 24 N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999875 55566667889999987 12 22233321 23466677764322 3
Q ss_pred EEEEEcCCeEEEEECCCCeE-----EEEEcC-CCCCE-EEEEEcC--CCCEEEEEe--CCeEEEEEcCCCCCceeEEEe-
Q 003236 697 ILAAAIENYISILDVETQVC-----RLKLQG-HKNQV-HSVCWNT--SGEYLASVS--DELVRVWSIGSGSKGECIHEL- 764 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~-----~~~l~~-h~~~V-~sl~~sp--dg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~- 764 (837)
++.+++||+|.-|...-... ...+.. ....| ..+++.. .+.+|+.+. .++|.|||-.-.... .-..+
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~-~~g~F~ 181 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP-LPGSFI 181 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc-CCCCcc
Confidence 68888999999998543211 122221 12333 3555543 467888777 889999985432100 00000
Q ss_pred ----ecCCC-----------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEe--ccCCCCeeEEEEeC------CC
Q 003236 765 ----SCTGN-----------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL--SAHDKLVSSLAAST------VN 821 (837)
Q Consensus 765 ----~~~~~-----------~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l--~~h~~~V~sla~sp------dg 821 (837)
...-. .|+-..-.++...=+.+..-|.|-+||....-+.++ .+.-...+.|+..| .+
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 00000 011111122333333444556899999866554444 23445667787765 35
Q ss_pred CEEEEEECCCcEEEeC
Q 003236 822 GMVASASHDKCVKIWK 837 (837)
Q Consensus 822 ~~LaSgs~DG~I~IWd 837 (837)
.+|+----||+|..||
T Consensus 262 ~lLVGNFGDG~InaFD 277 (336)
T TIGR03118 262 ALLVGNFGDGTINAYD 277 (336)
T ss_pred CeEEeecCCceeEEec
Confidence 5666656799999887
No 485
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.22 E-value=17 Score=41.06 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=20.4
Q ss_pred EEEEECCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECC
Q 003236 792 LELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 792 I~IwDl~s~~~~~l~~h~-~~V~sla~spdg~~LaSgs~D 830 (837)
+.+||..+.+...+..-. ..-...+..-+++++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 567888877654222111 111122344557788888753
No 486
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.14 E-value=5.5 Score=37.71 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=70.2
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCCCe--------EEEEEcCCCCCEEEEEEcC-----CCCEEEEEeCCeEEEEEcCC
Q 003236 688 MRFQPRLGRILAAAIENYISILDVETQV--------CRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 688 l~~sp~g~~llags~dg~I~iwDl~s~~--------~~~~l~~h~~~V~sl~~sp-----dg~~LasgsDg~I~IwDl~s 754 (837)
-.|......|++++..+.|.|++..... .+..+. -...|++|+--+ +...|+.|+...|.+||+..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 3455555568888888999999876432 233333 456777775543 45689999999999999987
Q ss_pred CCCceeEEEeecCCCceEEEEEe---CCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 755 GSKGECIHELSCTGNKFHSCVFH---PTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fs---pdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
... ...+ .-...+.++.+- ....-++..+.+-.|.-||....+.+
T Consensus 83 N~d-~Fyk---e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSD-LFYK---EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred Cch-hhhh---hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 632 1111 223455555552 22334666666778888887766654
No 487
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.93 E-value=29 Score=38.32 Aligned_cols=143 Identities=14% Similarity=0.182 Sum_probs=85.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCe------EEEEEcCCCC---cee-----EEeeccc--------cceEEEEEcCCCCeE
Q 003236 598 QWITDVRFSPSLSRLATSSADRT------VRVWDTENPD---YSL-----RTFTGHS--------TTVMSLDFHPSKEDL 655 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~------I~IWDl~~~~---~~~-----~~~~~h~--------~~V~sl~fspdg~~l 655 (837)
+.+..|.+.+++..+++.+.+|. +..+++.... ..+ ..+.... ....+|++.+++. +
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~-~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS-F 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-E
Confidence 56778888866666677777777 6655554310 001 1111111 1445788855554 5
Q ss_pred EEEEeCC------CcEEEEECCCCeeeeEEe----------------cCCCeeEEEEecCCCEEEEEEcC-----C----
Q 003236 656 LCSCDNN------SEIRYWSINNGSCAGVFK----------------CQSGATQMRFQPRLGRILAAAIE-----N---- 704 (837)
Q Consensus 656 lasgs~D------g~I~vwDl~t~~~i~~~~----------------~~~~i~sl~~sp~g~~llags~d-----g---- 704 (837)
+++.-.+ ..|+.++.. |+.+..+. .+.+...++++|++..|+++... +
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 6566556 678888876 65544432 23457899999999977776542 2
Q ss_pred -------eEEEEECCC-Ce----EEEEEcC-----CCCCEEEEEEcCCCCEEEEE
Q 003236 705 -------YISILDVET-QV----CRLKLQG-----HKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 705 -------~I~iwDl~s-~~----~~~~l~~-----h~~~V~sl~~spdg~~Lasg 742 (837)
.|..||..+ +. ..+.+.. ....|..+.+.+++++|+.-
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 244556554 21 2223322 35678899999999987754
No 488
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.89 E-value=17 Score=37.34 Aligned_cols=102 Identities=7% Similarity=0.146 Sum_probs=67.4
Q ss_pred CeEEEEEeCCCcEEEEECC--CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC------eEEEE-ECCC----CeEEE-
Q 003236 653 EDLLCSCDNNSEIRYWSIN--NGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN------YISIL-DVET----QVCRL- 718 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~--t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg------~I~iw-Dl~s----~~~~~- 718 (837)
+.+|++ ...+.|.+|++. .......|..-+.|..+.++..|+++++--.+. .+++| +.+. ..++.
T Consensus 29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 345444 447789999998 445667777778999999999999999987642 45665 2221 11111
Q ss_pred EEcCC---------------------CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 719 KLQGH---------------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 719 ~l~~h---------------------~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
.+-|| ...+.+++..|-.--|++|+++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 22222 23567787777555566678888999987643
No 489
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.82 E-value=6.7 Score=46.77 Aligned_cols=170 Identities=11% Similarity=0.152 Sum_probs=82.0
Q ss_pred CcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE---EcCCCCCEEEEEEcCCCCE
Q 003236 663 SEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK---LQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~---l~~h~~~V~sl~~spdg~~ 738 (837)
-.|+||++. |..+..+. .+..+..+.|+.+ ..|++...+|.+.+|++-....... +......|..+.|..+|-.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 457777776 44443333 2457888999876 6688889999999999864322110 1112334555555556655
Q ss_pred EEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEE-EeCCCC--EEEEEEcCCeEEEEECC--CCcEEEeccCCCCee
Q 003236 739 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV-FHPTFP--SLLVIGCYETLELWNMT--ENKTLTLSAHDKLVS 813 (837)
Q Consensus 739 LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~-fspdg~--~L~sgs~dg~I~IwDl~--s~~~~~l~~h~~~V~ 813 (837)
+.+.++..+.+-++..... .....++.......+-. +.|... .++-....-...++-.. ......+......+.
T Consensus 142 vlt~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ 220 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVV 220 (829)
T ss_pred EEecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEE
Confidence 5555454555554443210 01111111111111111 112111 11111100001111111 122223333345677
Q ss_pred EEEEeCCCCEEEEEECCCcEEE
Q 003236 814 SLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 814 sla~spdg~~LaSgs~DG~I~I 835 (837)
.+.+||+.++|+--..+|.|.+
T Consensus 221 ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 221 KISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred EEEEcCCcceEEEEecCCcEEE
Confidence 7888888888888888887754
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.71 E-value=6.6 Score=46.87 Aligned_cols=96 Identities=14% Similarity=0.257 Sum_probs=57.3
Q ss_pred eEEEEecCCCEEEEEEcCC-----eEEEEECCC---CeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC
Q 003236 686 TQMRFQPRLGRILAAAIEN-----YISILDVET---QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 757 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg-----~I~iwDl~s---~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~ 757 (837)
..+.|-|.|..+++...|| .|.++..+. |..-.. .+....+..++|+-....++.+..+.|++|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 3488999999999887654 355554321 211111 12344567788887777777777889999987553
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 758 GECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 758 ~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
.........-..+.-+.|+|....-+.
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCcEEE
Confidence 222222333345566778886544333
No 491
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.40 E-value=0.031 Score=62.43 Aligned_cols=141 Identities=16% Similarity=0.296 Sum_probs=98.8
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEE
Q 003236 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH 762 (837)
Q Consensus 685 i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~ 762 (837)
.....|.+.+..+++++.+..+..||-...... .+. .++....++|+.++..++... .+.+++||+.+... .
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-q--- 110 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-Q--- 110 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-H---
Confidence 345667788888999999999999986543222 222 345566788988887666544 78999999987532 1
Q ss_pred EeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc-CCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 763 ELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 763 ~~~~~~-~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~-h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
.++... ..-.-+.|++.+..++.+...+.+.||+..+.+.....+ |...+++++|.+.+ +.+.++.|..
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 111111 111226899999999999999999999998887775555 99999999999876 4455555543
No 492
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.38 E-value=42 Score=39.25 Aligned_cols=143 Identities=12% Similarity=0.056 Sum_probs=75.0
Q ss_pred CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccc---cceEEEEEcCC
Q 003236 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPS 651 (837)
Q Consensus 575 ~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~---~~V~sl~fspd 651 (837)
..+.+.++|. +|.....+.........+.+.++|.+++... ..++.+|+... .+..+.-.. ..-..+.+.|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~--v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK--VIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC--EEEeeecCCcccccccccEECCC
Confidence 4556677774 3455554433222222266778888877665 78888888743 233332222 11345777788
Q ss_pred CCeEEEEEe-------C-----CCcEEEEECCCCeeeeEEec--------C--------------------CCeeEEEEe
Q 003236 652 KEDLLCSCD-------N-----NSEIRYWSINNGSCAGVFKC--------Q--------------------SGATQMRFQ 691 (837)
Q Consensus 652 g~~llasgs-------~-----Dg~I~vwDl~t~~~i~~~~~--------~--------------------~~i~sl~~s 691 (837)
|+.++++.. . .-.|..+| .+|+.+..+.. . -.+.++.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 876665541 0 12355566 66766665442 0 136889999
Q ss_pred cCCCEEEEEEcC-CeEEEEECCCCeEEEEEcCC
Q 003236 692 PRLGRILAAAIE-NYISILDVETQVCRLKLQGH 723 (837)
Q Consensus 692 p~g~~llags~d-g~I~iwDl~s~~~~~~l~~h 723 (837)
+..+.|++.+.. ..|..+|.++++....+..+
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 977777777775 58999999999888887655
No 493
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.30 E-value=36 Score=38.32 Aligned_cols=181 Identities=13% Similarity=0.191 Sum_probs=103.8
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEec----CCCE--EEEEEc-C---CeEEEEECC--CCeEEEEE
Q 003236 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP----RLGR--ILAAAI-E---NYISILDVE--TQVCRLKL 720 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp----~g~~--llags~-d---g~I~iwDl~--s~~~~~~l 720 (837)
..+++....++-+.+||+. |+.+..+.. +.++.+.+-. .++. |++++. + +.|++|.+. ++. +..+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 3466677788899999998 555555543 4444443321 3333 344443 2 468888664 343 3332
Q ss_pred cC-------CCCCEEEEEEc--C-CCCEEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 721 QG-------HKNQVHSVCWN--T-SGEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 721 ~~-------h~~~V~sl~~s--p-dg~~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
.. ....+..+|+- + +|.+.+... +|.+.-|.+..... .+.++.|.. ...+..|+.......|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 21 12346777773 3 466555444 88888888753222 245666664 45899999999999999
Q ss_pred EEEcCCeEEEEECCCC-----cEEEe-c--cCCCCeeEEEEeC--CC-CEEEEEE-CCCcEEEeC
Q 003236 785 VIGCYETLELWNMTEN-----KTLTL-S--AHDKLVSSLAAST--VN-GMVASAS-HDKCVKIWK 837 (837)
Q Consensus 785 sgs~dg~I~IwDl~s~-----~~~~l-~--~h~~~V~sla~sp--dg-~~LaSgs-~DG~I~IWd 837 (837)
++-.+.-|.-|+.+-. ..+.. . .....|-.|++-. ++ .||+.++ .+++..|||
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 9999999999987522 22222 1 2345677887753 33 3555544 566777774
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.75 E-value=5.8 Score=41.79 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=74.2
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCC-CceeEE--EeecCCCceEEEEEeC
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGS-KGECIH--ELSCTGNKFHSCVFHP 778 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~~-~~~~i~--~~~~~~~~I~sv~fsp 778 (837)
-.+||+.+++....-........+-.+.+||++|.+|+ +| .+++++..... ...... ..-......-++..-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 45788888754332222222333446778999999988 44 68888865411 001111 1112344556677788
Q ss_pred CCCEEEEEEcCC-eEEEEECCC--CcEEEe--cc------CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 779 TFPSLLVIGCYE-TLELWNMTE--NKTLTL--SA------HDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 779 dg~~L~sgs~dg-~I~IwDl~s--~~~~~l--~~------h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
||+.|++|+... +..+|.-.. .....+ .. ....--.+...|+|++++.+..+..|.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 999999998876 566666432 122211 11 111122456679999999998776554
No 495
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.74 E-value=6.8 Score=47.25 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=76.0
Q ss_pred CeEEEEEcC--CCCEEEEEECCCcEEEEeCCC-------C----e---------EEEEeccCCCCeEEEEEc--CCCCEE
Q 003236 557 KVESCHFSP--DGKLLATGGHDKKAVLWCTES-------F----T---------VKSTLEEHTQWITDVRFS--PSLSRL 612 (837)
Q Consensus 557 ~V~sl~fSp--dg~~Lasgs~Dg~I~VWd~~t-------~----~---------~~~~l~~h~~~I~~l~fs--pdg~~L 612 (837)
.|+-|.... +...|+.+.+||.|.+|.+++ . + +...+. ....++.++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355554443 556899999999999996521 1 0 112222 34578999998 778889
Q ss_pred EEEeCCCeEEEEEcCCC--CceeEEeeccccceEEEEEcCCC--C---eEEEEEeCCCcEEEEEC
Q 003236 613 ATSSADRTVRVWDTENP--DYSLRTFTGHSTTVMSLDFHPSK--E---DLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 613 atgs~Dg~I~IWDl~~~--~~~~~~~~~h~~~V~sl~fspdg--~---~llasgs~Dg~I~vwDl 670 (837)
|+++....|.||-+... +.....-..|...|-+|+|.++. . ..+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 99988888888866542 21111122366778999998754 1 36778888999999887
No 496
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.59 E-value=55 Score=39.41 Aligned_cols=158 Identities=11% Similarity=0.122 Sum_probs=90.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee--EEeecccc------ceEEEEEcCCCCeEEEEEe-CC--Cc
Q 003236 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHST------TVMSLDFHPSKEDLLCSCD-NN--SE 664 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~--~~~~~h~~------~V~sl~fspdg~~llasgs-~D--g~ 664 (837)
-.+.|..|.|..+++.+++...+|.|.+||...+.... ..-..+.. .|.........+.+++.+. .+ -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 36789999999999999999999999999993322111 11111222 2222221112234444444 12 35
Q ss_pred EEEEEC--CCCeeeeEE---ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-----C-CCEEEEEEc
Q 003236 665 IRYWSI--NNGSCAGVF---KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----K-NQVHSVCWN 733 (837)
Q Consensus 665 I~vwDl--~t~~~i~~~---~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h-----~-~~V~sl~~s 733 (837)
++++.+ ....+...- ..........|....+.++.- .++.|.+|++..-+...++.-. . ..+.++. .
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-P 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee-c
Confidence 677777 333333321 112233444444445555555 7789999999877655554321 1 2343443 3
Q ss_pred CCCCEEEEEeCCeEEEEEcCCC
Q 003236 734 TSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 734 pdg~~LasgsDg~I~IwDl~s~ 755 (837)
|..+.++.+.++.|++.|+.-.
T Consensus 286 ~s~nRvLLs~~nkIyLld~~~~ 307 (670)
T PF10395_consen 286 PSPNRVLLSVNNKIYLLDLKFE 307 (670)
T ss_pred CCCCeEEEEcCCEEEEEeehhh
Confidence 4556677777889999998754
No 497
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.34 E-value=2.2 Score=44.38 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=52.7
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCCeEEEEE-------c-------CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 690 FQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 690 ~sp~g~~llags~dg~I~iwDl~s~~~~~~l-------~-------~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4456789999999999999999998765432 1 2446788899999999888888888999987654
No 498
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=89.31 E-value=37 Score=37.03 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=66.5
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
++|+.+++.+..-- .-..+..|. +|++.++-+ .|.|..+|..++.. +.+..+ .+....++|. |++++++
T Consensus 189 vidv~s~evl~~GL---smPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~-e~Va~v---pG~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 189 VIDIPSGEVVASGL---SMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKF-QPVAFL---PGFTRGLAFA--GDFAFVG 258 (335)
T ss_pred EEEeCCCCEEEcCc---cCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcE-EEEEEC---CCCCccccee--CCEEEEE
Confidence 35666665443211 122334454 566666666 88999999887643 333333 3456777887 7777766
Q ss_pred EcC--------------------CeEEEEECCCCcEE---EeccCCCCeeEEEEeCCCC
Q 003236 787 GCY--------------------ETLELWNMTENKTL---TLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 787 s~d--------------------g~I~IwDl~s~~~~---~l~~h~~~V~sla~spdg~ 822 (837)
-+. .-|.+.|+.+|..+ .+.+.-..|.++++-|.-+
T Consensus 259 mSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg~r 317 (335)
T TIGR03032 259 LSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPGVR 317 (335)
T ss_pred eccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecCCC
Confidence 431 24788899999977 5556667788888888644
No 499
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=89.26 E-value=48 Score=38.33 Aligned_cols=280 Identities=10% Similarity=0.062 Sum_probs=0.0
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-------ccCCCCeEEEEEcCCC------CEEE
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSL------SRLA 613 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------~~h~~~I~~l~fspdg------~~La 613 (837)
.+.++...-..-+.|+|.|||++|++--..|.|++++..++...... ....+....|+|+|+- .+|+
T Consensus 21 ~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred EEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Q ss_pred EEe----------CCCeEEEEEcCCC----CceeEEeeccccc----eEEEEEcCCCCeEEEEEeC--------------
Q 003236 614 TSS----------ADRTVRVWDTENP----DYSLRTFTGHSTT----VMSLDFHPSKEDLLCSCDN-------------- 661 (837)
Q Consensus 614 tgs----------~Dg~I~IWDl~~~----~~~~~~~~~h~~~----V~sl~fspdg~~llasgs~-------------- 661 (837)
+.. ....|.-|.+... ......+...... -..|.|.||+..++.+|+.
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~a 180 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQA 180 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcchh
Q ss_pred -----------------CCcEEEEECCCC-----------eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 662 -----------------NSEIRYWSINNG-----------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 662 -----------------Dg~I~vwDl~t~-----------~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
.|+|.-.|.... ..............++|.| .+.|+++..... .
T Consensus 181 Q~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp~-------~ 252 (454)
T TIGR03606 181 QHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGPN-------S 252 (454)
T ss_pred ccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCCC-------C
Q ss_pred CeEEEEEcC--CCCCEEEEEEcCCCCEEEEEe-CCe---------------EEEEEcCCCCCceeEEEee----------
Q 003236 714 QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DEL---------------VRVWSIGSGSKGECIHELS---------- 765 (837)
Q Consensus 714 ~~~~~~l~~--h~~~V~sl~~spdg~~Lasgs-Dg~---------------I~IwDl~s~~~~~~i~~~~---------- 765 (837)
...+..+.. +-++-.+--+..+..+..... ... +.+-+..+.........+.
T Consensus 253 ~DEiN~I~~G~NYGWP~~~G~~~~~~~~~~~ys~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~P~~~~~~~~~~~~ 332 (454)
T TIGR03606 253 DDELNIIVKGGNYGWPNVAGYKDDSGYVYANYSAAANKSIKTLAQNGIPAGVPVTKESEWTAKNFVPPLKTLYTVQDTYN 332 (454)
T ss_pred CcEEEEeccCCcCCCCceeecCccccccccccccccccccccccccccCcCccccccccccCccccCCceeccccccccc
Q ss_pred -------------cCCCceEEEEEeC---------CCCEEEEEEcCCeEEEEECCCC------cEEEeccCCCCeeEEEE
Q 003236 766 -------------CTGNKFHSCVFHP---------TFPSLLVIGCYETLELWNMTEN------KTLTLSAHDKLVSSLAA 817 (837)
Q Consensus 766 -------------~~~~~I~sv~fsp---------dg~~L~sgs~dg~I~IwDl~s~------~~~~l~~h~~~V~sla~ 817 (837)
...-...+++|-. ++..|+.+-..+.|....++.. +...+....+.|.+|..
T Consensus 333 ~~~~~~~~~~~~~~psiapsg~~~y~~~g~~~p~w~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~~~RiRdv~~ 412 (454)
T TIGR03606 333 YNDATCGEMTYICWPTIAPSSAYYYKGGEKGITGWENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKTNNRYRDVIA 412 (454)
T ss_pred cccccccccccccCCCcCCceeEEEecCcccCcccCCCEEEEEcCCCeEEEEEecCCcceecceeEEeecCCCeeEEEEE
Q ss_pred eCCC-CEEEEEECCCcEE
Q 003236 818 STVN-GMVASASHDKCVK 834 (837)
Q Consensus 818 spdg-~~LaSgs~DG~I~ 834 (837)
.||| .+.+..+.+|.+.
T Consensus 413 ~pDg~~iy~~td~~g~~~ 430 (454)
T TIGR03606 413 SPDGNVLYVATDNFGNVQ 430 (454)
T ss_pred CCCCCEEEEEEcCCCccc
No 500
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.78 E-value=29 Score=43.18 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred cEEEEeCCCCeEEEEeccCCC----CeEEEEEcCCCCE-EEEEeC------------CCeEEEEEcCCCCceeEEeeccc
Q 003236 578 KAVLWCTESFTVKSTLEEHTQ----WITDVRFSPSLSR-LATSSA------------DRTVRVWDTENPDYSLRTFTGHS 640 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~~----~I~~l~fspdg~~-Latgs~------------Dg~I~IWDl~~~~~~~~~~~~h~ 640 (837)
.|+++|..+++.+..+....+ .|..+.|+..... ++.++. +|.++.|++-.....+..+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~ 719 (837)
-+-.-.+.+|..+.++ ++....+++||+...+.++...... +..-....-.+.++++|.
T Consensus 934 ~~~~v~Ai~~f~~~~L--agvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD------------------ 993 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVL--AGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGD------------------ 993 (1205)
T ss_pred CCccceEEeccCCEEE--EecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEee------------------
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 720 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 720 l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
....|.-+.|.++++.|+.-.|+.+.-| ..+.+.-|...++.+..-|.+.+..+..
T Consensus 994 ---~qeSV~~~~y~~~~n~l~~fadD~~pR~---------------------Vt~~~~lD~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 994 ---IQESVHFVRYRREDNQLIVFADDPVPRH---------------------VTALELLDYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred ---ccceEEEEEEecCCCeEEEEeCCCccce---------------------eeEEEEecCCceeeccccCcEEEEECCC
Q ss_pred CcEEEeccCCCCeeEEEE
Q 003236 800 NKTLTLSAHDKLVSSLAA 817 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~ 817 (837)
....... |+.....++|
T Consensus 1050 d~~e~~~-edpt~~k~~~ 1066 (1205)
T KOG1898|consen 1050 DVSEEAS-EDPTELKIAW 1066 (1205)
T ss_pred cchhhhc-cCCcccccee
Done!