Query 003236
Match_columns 837
No_of_seqs 1241 out of 2953
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 1.6E-41 5.4E-46 373.7 46.6 289 544-837 44-340 (340)
2 1vyh_C Platelet-activating fac 100.0 4.7E-42 1.6E-46 388.3 42.3 284 549-837 102-408 (410)
3 3ow8_A WD repeat-containing pr 100.0 6.8E-41 2.3E-45 366.3 43.8 285 548-837 25-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 4.8E-40 1.6E-44 364.5 46.3 289 545-837 54-354 (354)
5 3iz6_a 40S ribosomal protein R 100.0 4.2E-41 1.4E-45 376.3 34.7 291 544-837 55-372 (380)
6 2ynn_A Coatomer subunit beta'; 100.0 3.7E-39 1.3E-43 349.0 42.6 284 546-834 4-297 (304)
7 3frx_A Guanine nucleotide-bind 100.0 7.3E-39 2.5E-43 349.4 44.6 289 542-837 4-314 (319)
8 1nr0_A Actin interacting prote 100.0 3.6E-39 1.2E-43 383.7 44.6 333 498-837 63-564 (611)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.9E-39 2E-43 354.1 43.1 292 545-837 5-332 (345)
10 1erj_A Transcriptional repress 100.0 8.3E-39 2.8E-43 359.3 43.6 282 553-837 62-386 (393)
11 1nr0_A Actin interacting prote 100.0 3.6E-39 1.2E-43 383.7 42.5 306 508-837 162-608 (611)
12 4ery_A WD repeat-containing pr 100.0 5.3E-38 1.8E-42 339.6 46.0 288 545-837 13-309 (312)
13 2xzm_R RACK1; ribosome, transl 100.0 4E-38 1.4E-42 346.6 43.6 287 544-837 10-337 (343)
14 2ymu_A WD-40 repeat protein; u 100.0 2.1E-37 7.1E-42 363.1 48.2 306 502-837 270-577 (577)
15 4gqb_B Methylosome protein 50; 100.0 2.7E-38 9.1E-43 349.7 36.8 279 553-837 28-328 (344)
16 2hes_X YDR267CP; beta-propelle 100.0 1.2E-37 4.2E-42 341.3 41.6 289 545-837 4-325 (330)
17 4g56_B MGC81050 protein; prote 100.0 1.9E-38 6.5E-43 352.2 33.7 281 552-837 39-340 (357)
18 3zwl_B Eukaryotic translation 100.0 6.4E-37 2.2E-41 335.3 44.1 284 547-837 24-343 (369)
19 3ow8_A WD repeat-containing pr 100.0 8E-37 2.7E-41 334.1 42.6 271 506-798 48-320 (321)
20 2ymu_A WD-40 repeat protein; u 100.0 2.6E-36 8.9E-41 353.8 49.1 306 502-837 229-536 (577)
21 1gxr_A ESG1, transducin-like e 100.0 1.7E-36 5.9E-41 328.0 43.1 280 551-837 47-334 (337)
22 1vyh_C Platelet-activating fac 100.0 3.7E-37 1.3E-41 348.2 39.1 268 507-798 121-410 (410)
23 4aow_A Guanine nucleotide-bind 100.0 4.2E-36 1.4E-40 326.3 45.9 287 544-837 27-334 (340)
24 1r5m_A SIR4-interacting protei 100.0 7.8E-37 2.7E-41 341.3 40.1 311 506-837 57-422 (425)
25 2pm9_A Protein WEB1, protein t 100.0 4.9E-38 1.7E-42 351.9 29.6 311 507-837 26-411 (416)
26 1sq9_A Antiviral protein SKI8; 100.0 1E-36 3.6E-41 339.2 38.2 287 545-837 6-392 (397)
27 2ynn_A Coatomer subunit beta'; 100.0 8.5E-36 2.9E-40 322.6 42.2 275 503-799 22-302 (304)
28 4gqb_B Methylosome protein 50; 100.0 1.7E-36 5.8E-41 335.3 35.4 244 553-802 80-334 (344)
29 1k8k_C P40, ARP2/3 complex 41 100.0 3.2E-36 1.1E-40 331.4 36.2 282 551-837 4-358 (372)
30 3dm0_A Maltose-binding peripla 100.0 1.7E-35 5.8E-40 357.0 43.8 285 546-837 373-690 (694)
31 3vl1_A 26S proteasome regulato 100.0 6E-36 2E-40 336.1 37.0 312 501-837 63-416 (420)
32 3odt_A Protein DOA1; ubiquitin 100.0 7.7E-35 2.6E-39 312.1 42.2 280 544-837 7-293 (313)
33 3frx_A Guanine nucleotide-bind 100.0 9.6E-35 3.3E-39 316.8 42.3 275 506-800 30-318 (319)
34 1got_B GT-beta; complex (GTP-b 100.0 6.9E-35 2.4E-39 320.6 41.0 266 506-796 67-340 (340)
35 3k26_A Polycomb protein EED; W 100.0 4.8E-36 1.6E-40 328.4 31.2 286 549-837 12-363 (366)
36 3ei3_B DNA damage-binding prot 100.0 2.5E-35 8.7E-40 327.8 37.2 285 545-837 63-379 (383)
37 3i2n_A WD repeat-containing pr 100.0 2.4E-35 8.4E-40 322.1 35.4 287 549-837 12-350 (357)
38 1r5m_A SIR4-interacting protei 100.0 5.1E-35 1.7E-39 326.6 37.6 278 552-837 42-358 (425)
39 3dwl_C Actin-related protein 2 100.0 2.7E-36 9.3E-41 334.2 22.7 285 550-837 6-376 (377)
40 2xzm_R RACK1; ribosome, transl 100.0 3.6E-34 1.2E-38 315.0 39.5 279 505-800 38-341 (343)
41 4g56_B MGC81050 protein; prote 100.0 2.9E-35 9.9E-40 326.6 30.6 244 551-800 90-344 (357)
42 3gre_A Serine/threonine-protei 100.0 4.9E-35 1.7E-39 331.4 32.9 285 546-837 53-437 (437)
43 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-33 3.9E-38 311.7 42.3 282 505-803 27-339 (345)
44 2pbi_B Guanine nucleotide-bind 100.0 5.7E-34 2E-38 315.6 39.8 267 507-796 77-354 (354)
45 3v7d_B Cell division control p 100.0 4.5E-33 1.5E-37 317.8 46.7 300 506-836 132-459 (464)
46 2pm9_A Protein WEB1, protein t 100.0 1.8E-35 6E-40 331.1 26.3 279 556-837 13-334 (416)
47 2j04_B YDR362CP, TAU91; beta p 100.0 1.8E-35 6.1E-40 345.1 27.1 315 505-837 172-514 (524)
48 4ery_A WD repeat-containing pr 100.0 1.6E-33 5.4E-38 304.5 39.9 270 505-798 34-311 (312)
49 1gxr_A ESG1, transducin-like e 100.0 4.8E-34 1.7E-38 308.8 35.9 278 554-837 8-293 (337)
50 2oaj_A Protein SNI1; WD40 repe 100.0 1.4E-33 4.9E-38 349.9 45.1 191 505-718 28-247 (902)
51 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.6E-33 1.2E-37 317.7 44.5 296 506-837 129-439 (445)
52 1erj_A Transcriptional repress 100.0 2.1E-33 7.3E-38 315.2 41.2 293 501-800 71-390 (393)
53 3mkq_A Coatomer beta'-subunit; 100.0 2.3E-33 7.8E-38 342.6 44.9 310 505-837 24-383 (814)
54 3sfz_A APAF-1, apoptotic pepti 100.0 5.7E-34 2E-38 364.8 41.1 313 504-837 625-1031(1249)
55 3v7d_B Cell division control p 100.0 3.2E-33 1.1E-37 319.1 42.5 280 546-837 112-418 (464)
56 1pgu_A Actin interacting prote 100.0 2.3E-33 8E-38 330.0 41.4 302 508-837 175-611 (615)
57 4h5i_A Guanine nucleotide-exch 100.0 3.9E-34 1.3E-38 318.6 32.6 279 556-837 15-340 (365)
58 4aow_A Guanine nucleotide-bind 100.0 1.2E-32 4.2E-37 298.9 43.5 278 506-801 51-339 (340)
59 1pgu_A Actin interacting prote 100.0 3.3E-33 1.1E-37 328.7 41.8 307 503-837 27-363 (615)
60 2hes_X YDR267CP; beta-propelle 100.0 2.7E-33 9.1E-38 306.8 38.2 273 508-799 26-328 (330)
61 3mmy_A MRNA export factor; mRN 100.0 1.1E-33 3.9E-38 309.3 35.1 288 544-836 28-342 (368)
62 1yfq_A Cell cycle arrest prote 100.0 8E-34 2.7E-38 308.9 33.7 277 548-832 4-315 (342)
63 4e54_B DNA damage-binding prot 100.0 7.2E-35 2.5E-39 331.5 26.4 282 549-837 113-427 (435)
64 3iz6_a 40S ribosomal protein R 100.0 2.2E-34 7.5E-39 321.8 29.4 273 506-801 78-377 (380)
65 2pm7_B Protein transport prote 100.0 1.9E-33 6.6E-38 303.1 35.4 250 549-798 3-284 (297)
66 3dw8_B Serine/threonine-protei 100.0 8.2E-34 2.8E-38 321.0 33.8 278 553-836 26-442 (447)
67 3f3f_A Nucleoporin SEH1; struc 100.0 9.8E-34 3.3E-38 305.9 32.5 285 549-837 5-334 (351)
68 4aez_A CDC20, WD repeat-contai 100.0 5.9E-33 2E-37 311.9 39.7 280 550-837 86-377 (401)
69 4a11_B DNA excision repair pro 100.0 6.1E-33 2.1E-37 308.4 37.1 289 547-837 35-362 (408)
70 3vl1_A 26S proteasome regulato 100.0 4.8E-34 1.7E-38 320.5 27.8 274 557-837 58-362 (420)
71 4gga_A P55CDC, cell division c 100.0 2.3E-32 7.8E-37 309.3 41.4 270 558-837 108-392 (420)
72 3mkq_A Coatomer beta'-subunit; 100.0 5.7E-33 1.9E-37 339.1 39.2 286 546-837 4-299 (814)
73 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-32 4.3E-37 352.4 43.0 285 549-837 609-910 (1249)
74 3dm0_A Maltose-binding peripla 100.0 2.4E-32 8.3E-37 329.4 42.3 274 506-798 395-692 (694)
75 4ggc_A P55CDC, cell division c 100.0 4.6E-32 1.6E-36 291.5 39.6 270 558-837 28-312 (318)
76 1sq9_A Antiviral protein SKI8; 100.0 8.1E-33 2.8E-37 307.8 34.6 276 507-801 27-397 (397)
77 1p22_A F-BOX/WD-repeat protein 100.0 1.8E-32 6.2E-37 311.3 36.6 271 548-837 126-411 (435)
78 3zwl_B Eukaryotic translation 100.0 2.9E-31 9.9E-36 290.3 44.0 272 505-801 43-348 (369)
79 3i2n_A WD repeat-containing pr 100.0 1.5E-32 5.1E-37 300.0 32.8 277 507-802 32-356 (357)
80 1k8k_C P40, ARP2/3 complex 41 100.0 6E-32 2.1E-36 297.3 36.6 279 505-801 19-363 (372)
81 2oaj_A Protein SNI1; WD40 repe 100.0 2.2E-32 7.6E-37 339.2 37.1 329 499-837 103-658 (902)
82 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.1E-31 7E-36 303.1 41.7 272 547-837 110-388 (445)
83 4aez_A CDC20, WD repeat-contai 100.0 1.2E-31 4.2E-36 301.1 39.2 273 507-803 104-384 (401)
84 3bg1_A Protein SEC13 homolog; 100.0 1.2E-32 4E-37 299.8 29.7 249 550-798 8-292 (316)
85 2pm7_B Protein transport prote 100.0 4.7E-32 1.6E-36 292.2 33.8 247 591-837 3-282 (297)
86 3k26_A Polycomb protein EED; W 100.0 4.9E-32 1.7E-36 296.5 32.9 288 480-798 19-365 (366)
87 4gga_A P55CDC, cell division c 100.0 6.3E-31 2.2E-35 297.4 41.5 272 507-803 117-399 (420)
88 3jrp_A Fusion protein of prote 100.0 1.2E-31 4.2E-36 294.8 33.5 251 548-799 4-287 (379)
89 3odt_A Protein DOA1; ubiquitin 100.0 4.2E-31 1.4E-35 283.0 35.4 268 505-804 28-301 (313)
90 3ei3_B DNA damage-binding prot 100.0 1.7E-31 5.7E-36 296.9 33.1 267 507-799 87-382 (383)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 7.8E-32 2.7E-36 302.4 30.6 278 557-837 36-339 (402)
92 3bg1_A Protein SEC13 homolog; 100.0 2.9E-32 1E-36 296.7 24.1 246 592-837 8-290 (316)
93 3bws_A Protein LP49; two-domai 100.0 1.5E-30 5.1E-35 293.6 38.5 285 546-837 114-429 (433)
94 3dwl_C Actin-related protein 2 100.0 3.6E-32 1.2E-36 301.0 24.6 279 501-797 18-377 (377)
95 4a11_B DNA excision repair pro 100.0 2.7E-30 9.1E-35 287.1 38.0 314 506-837 56-402 (408)
96 4e54_B DNA damage-binding prot 100.0 2.5E-31 8.6E-36 302.3 29.7 274 506-802 132-433 (435)
97 3jrp_A Fusion protein of prote 100.0 1E-30 3.5E-35 287.5 32.0 250 588-837 2-284 (379)
98 4ggc_A P55CDC, cell division c 100.0 2.4E-29 8.1E-34 270.3 39.6 270 507-801 37-317 (318)
99 1p22_A F-BOX/WD-repeat protein 100.0 5.9E-30 2E-34 290.6 34.3 281 506-818 143-433 (435)
100 3vu4_A KMHSV2; beta-propeller 100.0 8E-30 2.7E-34 282.4 34.2 274 548-837 12-333 (355)
101 3gre_A Serine/threonine-protei 100.0 5.3E-31 1.8E-35 298.2 24.7 264 562-837 34-356 (437)
102 3dw8_B Serine/threonine-protei 100.0 6.4E-30 2.2E-34 289.0 32.4 278 506-798 40-445 (447)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.8E-29 9.7E-34 286.5 37.9 272 556-836 5-387 (450)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 3.9E-30 1.3E-34 288.5 28.5 277 507-803 48-346 (402)
105 2xyi_A Probable histone-bindin 100.0 2.1E-29 7E-34 286.2 33.0 245 591-837 122-407 (430)
106 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-30 4.9E-35 286.1 22.1 265 562-836 43-329 (343)
107 4h5i_A Guanine nucleotide-exch 100.0 3.4E-29 1.2E-33 278.7 32.9 277 506-800 26-344 (365)
108 1l0q_A Surface layer protein; 100.0 8.4E-28 2.9E-32 267.3 42.8 275 507-809 3-286 (391)
109 1l0q_A Surface layer protein; 100.0 3.6E-28 1.2E-32 270.2 39.1 262 568-837 3-272 (391)
110 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-30 4.2E-35 304.3 19.9 256 564-824 170-458 (524)
111 1yfq_A Cell cycle arrest prote 100.0 7.1E-29 2.4E-33 269.7 31.9 263 506-796 23-321 (342)
112 2j04_A TAU60, YPL007P, hypothe 100.0 6E-30 2.1E-34 294.1 24.0 262 553-837 13-294 (588)
113 2xyi_A Probable histone-bindin 100.0 4.5E-29 1.5E-33 283.4 30.4 252 549-800 122-411 (430)
114 3jro_A Fusion protein of prote 100.0 2.9E-29 9.9E-34 305.8 27.8 251 548-799 2-285 (753)
115 3f3f_A Nucleoporin SEH1; struc 100.0 5.1E-28 1.7E-32 261.0 34.0 280 506-803 23-341 (351)
116 3mmy_A MRNA export factor; mRN 100.0 1.4E-27 4.7E-32 261.0 35.4 286 480-803 40-353 (368)
117 2j04_A TAU60, YPL007P, hypothe 100.0 3.1E-29 1.1E-33 288.2 23.3 245 553-829 83-350 (588)
118 4gq1_A NUP37; propeller, trans 100.0 1.4E-28 4.9E-33 276.2 25.5 261 552-833 86-383 (393)
119 3jro_A Fusion protein of prote 100.0 2.4E-28 8.1E-33 297.7 26.0 248 590-837 2-282 (753)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3E-26 1E-30 261.5 37.3 245 551-798 98-390 (450)
121 1nir_A Nitrite reductase; hemo 100.0 7.3E-26 2.5E-30 265.4 40.0 310 505-837 148-511 (543)
122 3vu4_A KMHSV2; beta-propeller 100.0 8.5E-27 2.9E-31 258.0 29.4 245 581-837 3-268 (355)
123 3bws_A Protein LP49; two-domai 100.0 2.5E-25 8.7E-30 250.7 38.3 277 502-799 130-432 (433)
124 3lrv_A PRE-mRNA-splicing facto 99.9 3.7E-26 1.3E-30 250.9 26.0 263 503-799 45-333 (343)
125 2w18_A PALB2, fancn, partner a 99.9 7E-25 2.4E-29 238.0 32.8 285 543-837 23-354 (356)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.4E-25 1.5E-29 249.9 31.8 265 549-822 111-410 (415)
127 4gq1_A NUP37; propeller, trans 99.9 1.3E-25 4.3E-30 252.2 21.2 236 503-753 98-388 (393)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 8.4E-25 2.9E-29 247.7 26.9 273 556-837 63-384 (415)
129 3vgz_A Uncharacterized protein 99.9 6.8E-23 2.3E-27 223.5 38.1 268 556-830 41-334 (353)
130 3u4y_A Uncharacterized protein 99.9 4.4E-23 1.5E-27 223.6 35.8 274 561-837 3-301 (331)
131 2w18_A PALB2, fancn, partner a 99.9 1.7E-23 5.7E-28 227.2 30.0 252 538-797 69-355 (356)
132 1ri6_A Putative isomerase YBHE 99.9 5.9E-23 2E-27 222.4 33.8 266 569-837 7-305 (343)
133 1nir_A Nitrite reductase; hemo 99.9 4E-23 1.4E-27 242.1 32.4 268 562-837 144-455 (543)
134 2ecf_A Dipeptidyl peptidase IV 99.9 3E-23 1E-27 251.1 30.3 275 555-837 36-410 (741)
135 2ojh_A Uncharacterized protein 99.9 7.8E-23 2.7E-27 215.5 27.6 252 573-831 18-293 (297)
136 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-22 4.1E-27 245.8 32.3 272 557-836 110-455 (741)
137 1ri6_A Putative isomerase YBHE 99.9 8E-22 2.7E-26 213.5 34.9 295 508-822 7-335 (343)
138 1pby_B Quinohemoprotein amine 99.9 3.1E-22 1.1E-26 216.2 31.0 262 568-837 2-307 (337)
139 3u4y_A Uncharacterized protein 99.9 1.2E-21 4E-26 212.4 34.6 292 506-821 10-326 (331)
140 2ojh_A Uncharacterized protein 99.9 1.3E-22 4.6E-27 213.7 26.3 238 550-790 36-293 (297)
141 3o4h_A Acylamino-acid-releasin 99.9 4.7E-22 1.6E-26 234.3 29.0 268 555-837 21-312 (582)
142 1xfd_A DIP, dipeptidyl aminope 99.9 9.7E-23 3.3E-27 245.7 22.7 275 557-837 18-390 (723)
143 2z3z_A Dipeptidyl aminopeptida 99.9 2E-21 7E-26 233.8 32.4 274 555-837 81-432 (706)
144 1k32_A Tricorn protease; prote 99.9 1.3E-21 4.6E-26 246.6 30.0 278 548-837 196-499 (1045)
145 1xfd_A DIP, dipeptidyl aminope 99.9 1.9E-21 6.5E-26 234.4 28.3 299 507-828 29-428 (723)
146 1k32_A Tricorn protease; prote 99.9 4.6E-21 1.6E-25 241.7 32.4 280 548-837 45-406 (1045)
147 3hfq_A Uncharacterized protein 99.9 3.4E-20 1.2E-24 202.8 34.9 260 576-836 15-313 (347)
148 1pby_B Quinohemoprotein amine 99.9 8.1E-21 2.8E-25 205.1 28.2 268 507-803 2-314 (337)
149 1jmx_B Amine dehydrogenase; ox 99.9 1.2E-20 4E-25 205.1 29.3 270 560-837 4-322 (349)
150 3pe7_A Oligogalacturonate lyas 99.9 9E-21 3.1E-25 210.2 28.1 287 547-836 22-378 (388)
151 3scy_A Hypothetical bacterial 99.9 2.1E-19 7.3E-24 197.8 37.8 262 554-818 48-360 (361)
152 3hfq_A Uncharacterized protein 99.9 9.9E-20 3.4E-24 199.2 34.2 249 553-803 37-323 (347)
153 3vgz_A Uncharacterized protein 99.9 2.9E-19 9.8E-24 194.7 33.4 235 597-837 40-300 (353)
154 2z3z_A Dipeptidyl aminopeptida 99.9 5.9E-20 2E-24 221.1 29.8 245 550-801 115-437 (706)
155 3scy_A Hypothetical bacterial 99.9 5.1E-19 1.7E-23 194.8 33.6 267 566-836 12-333 (361)
156 2oit_A Nucleoporin 214KDA; NH2 99.8 1.2E-19 4.2E-24 206.5 27.9 240 555-797 36-331 (434)
157 1z68_A Fibroblast activation p 99.8 2.2E-20 7.7E-25 225.3 18.7 271 560-837 20-388 (719)
158 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.9E-18 6.4E-23 191.5 32.4 267 569-837 4-338 (365)
159 3c5m_A Oligogalacturonate lyas 99.8 2.2E-19 7.7E-24 198.8 21.9 272 558-836 38-378 (396)
160 1jmx_B Amine dehydrogenase; ox 99.8 2.6E-18 8.8E-23 186.6 29.4 272 503-803 8-329 (349)
161 1z68_A Fibroblast activation p 99.8 2.6E-19 8.9E-24 216.0 22.4 274 557-837 61-440 (719)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.8E-17 6.1E-22 183.6 33.4 246 554-801 38-343 (365)
163 3o4h_A Acylamino-acid-releasin 99.8 1.3E-18 4.5E-23 204.8 22.8 229 597-837 21-273 (582)
164 4a5s_A Dipeptidyl peptidase 4 99.8 7.9E-18 2.7E-22 204.4 26.9 266 556-829 17-382 (740)
165 2oit_A Nucleoporin 214KDA; NH2 99.8 1E-17 3.5E-22 190.7 24.1 212 577-800 23-279 (434)
166 3azo_A Aminopeptidase; POP fam 99.8 2.8E-17 9.4E-22 196.2 27.5 281 550-836 18-363 (662)
167 2oiz_A Aromatic amine dehydrog 99.8 1.8E-16 6.1E-21 175.9 29.9 262 550-822 46-360 (361)
168 4a5s_A Dipeptidyl peptidase 4 99.8 1.1E-16 3.6E-21 194.5 30.5 295 507-829 29-435 (740)
169 2oiz_A Aromatic amine dehydrog 99.8 1.6E-16 5.4E-21 176.3 29.1 263 566-837 14-331 (361)
170 2gop_A Trilobed protease; beta 99.8 3.6E-16 1.2E-20 170.4 29.8 252 557-836 16-327 (347)
171 3fvz_A Peptidyl-glycine alpha- 99.7 7.2E-16 2.5E-20 168.3 30.2 240 555-799 23-322 (329)
172 2dg1_A DRP35, lactonase; beta 99.7 7.3E-16 2.5E-20 167.3 28.8 267 556-830 6-300 (333)
173 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-14 4.8E-19 169.9 41.0 308 507-837 168-535 (567)
174 1q7f_A NHL, brain tumor CG1071 99.7 4.7E-15 1.6E-19 157.4 32.5 237 553-800 27-281 (286)
175 3pe7_A Oligogalacturonate lyas 99.7 6.9E-16 2.4E-20 170.7 26.0 244 550-799 75-384 (388)
176 1q7f_A NHL, brain tumor CG1071 99.7 8.2E-15 2.8E-19 155.6 33.0 234 595-837 27-277 (286)
177 2z2n_A Virginiamycin B lyase; 99.7 9.8E-14 3.3E-18 147.0 39.9 274 551-834 10-290 (299)
178 3azo_A Aminopeptidase; POP fam 99.7 7.5E-16 2.6E-20 183.7 25.7 239 560-805 81-375 (662)
179 3fvz_A Peptidyl-glycine alpha- 99.7 5.4E-15 1.9E-19 161.3 28.7 234 597-837 23-319 (329)
180 2dg1_A DRP35, lactonase; beta 99.7 5.1E-14 1.7E-18 152.7 35.5 244 548-798 37-315 (333)
181 3e5z_A Putative gluconolactona 99.7 1.7E-14 6E-19 154.1 29.6 243 549-803 21-290 (296)
182 2xdw_A Prolyl endopeptidase; a 99.7 6.3E-15 2.1E-19 178.0 28.9 244 554-801 123-416 (710)
183 3dsm_A Uncharacterized protein 99.7 2.9E-14 1E-18 155.7 31.2 251 575-837 15-299 (328)
184 2gop_A Trilobed protease; beta 99.7 1.8E-14 6.1E-19 157.0 28.2 232 556-811 59-342 (347)
185 1qks_A Cytochrome CD1 nitrite 99.7 2.9E-13 1E-17 158.7 38.4 265 565-837 165-474 (567)
186 3e5z_A Putative gluconolactona 99.6 6.9E-14 2.4E-18 149.4 29.7 239 588-835 18-282 (296)
187 2qc5_A Streptogramin B lactona 99.6 1.1E-12 3.7E-17 139.0 38.3 275 551-836 15-296 (300)
188 3dsm_A Uncharacterized protein 99.6 1.1E-13 3.7E-18 151.2 29.8 253 557-817 45-319 (328)
189 2bkl_A Prolyl endopeptidase; m 99.6 6.1E-15 2.1E-19 177.6 21.9 247 553-806 118-404 (695)
190 3c5m_A Oligogalacturonate lyas 99.6 6.4E-15 2.2E-19 162.8 20.2 248 580-837 13-326 (396)
191 3sjl_D Methylamine dehydrogena 99.6 1.3E-13 4.5E-18 152.9 28.3 271 561-837 38-360 (386)
192 1rwi_B Serine/threonine-protei 99.6 1.2E-13 4.1E-18 144.7 26.5 238 557-801 25-266 (270)
193 2mad_H Methylamine dehydrogena 99.6 2.2E-12 7.6E-17 143.6 37.0 266 563-837 28-347 (373)
194 2xdw_A Prolyl endopeptidase; a 99.6 2.2E-13 7.6E-18 164.4 30.7 268 565-837 81-411 (710)
195 1rwi_B Serine/threonine-protei 99.6 2E-13 6.8E-18 143.0 25.5 233 599-837 25-261 (270)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.1E-12 7.2E-17 138.2 31.8 240 552-799 14-299 (314)
197 3no2_A Uncharacterized protein 99.6 1.1E-12 3.9E-17 139.7 28.9 241 566-816 4-272 (276)
198 2bkl_A Prolyl endopeptidase; m 99.5 2.3E-13 7.9E-18 163.9 24.4 268 564-837 76-394 (695)
199 2z2n_A Virginiamycin B lyase; 99.5 2.6E-11 8.9E-16 128.2 37.3 240 553-801 54-297 (299)
200 1yr2_A Prolyl oligopeptidase; 99.5 4.4E-13 1.5E-17 162.7 26.4 245 554-805 161-447 (741)
201 2mad_H Methylamine dehydrogena 99.5 4E-11 1.4E-15 133.4 39.4 244 549-805 61-356 (373)
202 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 5.7E-12 1.9E-16 134.8 29.7 238 596-837 16-296 (314)
203 3c75_H MADH, methylamine dehyd 99.5 2.2E-12 7.4E-17 145.5 26.6 266 565-837 82-399 (426)
204 1yr2_A Prolyl oligopeptidase; 99.5 3.5E-12 1.2E-16 154.7 27.2 268 564-837 115-438 (741)
205 3sjl_D Methylamine dehydrogena 99.5 5.7E-12 1.9E-16 139.8 25.6 262 548-820 72-384 (386)
206 3no2_A Uncharacterized protein 99.5 2.5E-11 8.4E-16 129.3 29.5 214 506-745 5-233 (276)
207 2qc5_A Streptogramin B lactona 99.5 2.2E-10 7.5E-15 121.0 36.1 235 553-798 59-299 (300)
208 3iuj_A Prolyl endopeptidase; h 99.4 4.8E-12 1.6E-16 152.4 24.5 245 553-806 126-412 (693)
209 3g4e_A Regucalcin; six bladed 99.4 1.5E-10 5.3E-15 123.9 33.7 230 592-829 7-261 (297)
210 3hrp_A Uncharacterized protein 99.4 4.5E-11 1.5E-15 134.7 30.7 230 598-836 131-406 (409)
211 3g4e_A Regucalcin; six bladed 99.4 1.5E-10 5.1E-15 124.0 33.2 231 551-789 8-262 (297)
212 3hrp_A Uncharacterized protein 99.4 1.1E-10 3.9E-15 131.4 31.8 232 556-797 131-408 (409)
213 2qe8_A Uncharacterized protein 99.4 5.4E-12 1.9E-16 138.4 20.4 259 556-831 17-312 (343)
214 2ghs_A AGR_C_1268P; regucalcin 99.4 4.5E-10 1.5E-14 122.2 34.7 221 558-790 51-293 (326)
215 3c75_H MADH, methylamine dehyd 99.4 4.8E-11 1.6E-15 134.5 25.7 247 548-805 112-408 (426)
216 3dr2_A Exported gluconolactona 99.4 1.1E-10 3.7E-15 125.6 26.8 234 549-796 38-303 (305)
217 3dr2_A Exported gluconolactona 99.4 9.6E-11 3.3E-15 126.0 26.1 234 591-835 38-302 (305)
218 2ghs_A AGR_C_1268P; regucalcin 99.4 7.4E-10 2.5E-14 120.5 32.7 221 599-829 50-291 (326)
219 1xip_A Nucleoporin NUP159; bet 99.3 1.6E-11 5.6E-16 136.5 18.0 172 557-743 39-232 (388)
220 1mda_H Methylamine dehydrogena 99.3 2.1E-11 7.2E-16 135.1 17.4 254 548-819 59-366 (368)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.3 2.3E-09 7.8E-14 118.4 33.7 255 566-837 102-375 (376)
222 2hz6_A Endoplasmic reticulum t 99.3 8.6E-14 2.9E-18 154.7 -6.2 223 566-801 8-238 (369)
223 1yiq_A Quinohemoprotein alcoho 99.3 6.4E-10 2.2E-14 133.7 26.6 266 567-837 70-502 (689)
224 1kb0_A Quinohemoprotein alcoho 99.2 8.6E-10 2.9E-14 132.3 27.2 263 567-837 77-504 (677)
225 3hxj_A Pyrrolo-quinoline quino 99.2 3.2E-10 1.1E-14 122.0 21.0 258 557-836 61-320 (330)
226 1mda_H Methylamine dehydrogena 99.2 1.8E-10 6.2E-15 127.6 19.1 246 578-837 47-343 (368)
227 3q7m_A Lipoprotein YFGL, BAMB; 99.2 4.7E-09 1.6E-13 115.8 29.9 255 567-837 53-334 (376)
228 3iuj_A Prolyl endopeptidase; h 99.2 6.5E-10 2.2E-14 133.8 24.5 236 595-837 126-402 (693)
229 1yiq_A Quinohemoprotein alcoho 99.2 4.1E-09 1.4E-13 126.6 30.6 256 567-828 121-537 (689)
230 1kb0_A Quinohemoprotein alcoho 99.2 2.6E-09 8.9E-14 128.1 28.7 254 566-826 127-536 (677)
231 1npe_A Nidogen, entactin; glyc 99.2 3.6E-08 1.2E-12 103.4 33.4 247 568-822 2-263 (267)
232 2ece_A 462AA long hypothetical 99.2 3.4E-08 1.2E-12 110.5 32.5 223 562-787 88-399 (462)
233 1xip_A Nucleoporin NUP159; bet 99.1 6.1E-10 2.1E-14 123.8 17.9 169 642-827 39-231 (388)
234 1fwx_A Nitrous oxide reductase 99.1 3.5E-09 1.2E-13 122.2 21.4 257 570-829 18-407 (595)
235 3hxj_A Pyrrolo-quinoline quino 99.1 7.8E-10 2.7E-14 118.9 15.2 256 561-837 25-281 (330)
236 2ece_A 462AA long hypothetical 99.1 6.2E-08 2.1E-12 108.3 29.7 222 604-828 88-399 (462)
237 2qe8_A Uncharacterized protein 99.1 3.4E-09 1.2E-13 116.0 19.3 220 598-837 17-275 (343)
238 1kv9_A Type II quinohemoprotei 99.0 3.7E-08 1.2E-12 117.9 28.0 264 567-837 66-485 (668)
239 1fwx_A Nitrous oxide reductase 99.0 9.6E-09 3.3E-13 118.6 21.8 234 566-803 100-435 (595)
240 1npe_A Nidogen, entactin; glyc 99.0 4.2E-07 1.4E-11 95.2 31.6 222 610-837 2-235 (267)
241 2iwa_A Glutamine cyclotransfer 99.0 1.6E-07 5.4E-12 98.9 26.2 205 588-800 10-238 (266)
242 2hz6_A Endoplasmic reticulum t 99.0 2.9E-10 9.7E-15 126.2 5.5 201 608-822 8-216 (369)
243 2ad6_A Methanol dehydrogenase 98.9 1.2E-07 4E-12 111.4 27.1 263 567-837 62-491 (571)
244 4a2l_A BT_4663, two-component 98.9 2.5E-06 8.5E-11 104.0 39.0 268 555-836 262-567 (795)
245 4a2l_A BT_4663, two-component 98.9 2.1E-06 7.3E-11 104.6 37.5 266 555-836 214-522 (795)
246 2fp8_A Strictosidine synthase; 98.9 9E-07 3.1E-11 95.5 29.7 234 556-800 19-314 (322)
247 1w6s_A Methanol dehydrogenase 98.9 3.3E-07 1.1E-11 107.8 28.0 265 567-837 62-500 (599)
248 2p4o_A Hypothetical protein; p 98.9 2.1E-06 7.1E-11 92.1 30.6 233 587-830 22-278 (306)
249 2fp8_A Strictosidine synthase; 98.8 1.3E-06 4.6E-11 94.1 28.7 232 598-837 19-310 (322)
250 3v9f_A Two-component system se 98.8 5.5E-06 1.9E-10 100.7 36.5 274 555-837 257-565 (781)
251 2iwa_A Glutamine cyclotransfer 98.8 8.7E-07 3E-11 93.2 24.8 186 642-835 22-232 (266)
252 1kv9_A Type II quinohemoprotei 98.8 7.3E-07 2.5E-11 106.6 26.9 255 567-828 117-520 (668)
253 3nol_A Glutamine cyclotransfer 98.8 7.8E-07 2.7E-11 92.7 23.1 192 588-789 32-245 (262)
254 2p4o_A Hypothetical protein; p 98.8 1.2E-05 3.9E-10 86.2 32.2 237 545-790 22-279 (306)
255 1ijq_A LDL receptor, low-densi 98.7 3.6E-05 1.2E-09 83.0 36.2 229 569-802 3-241 (316)
256 1k3i_A Galactose oxidase precu 98.7 1.7E-07 5.9E-12 111.9 19.3 266 560-829 190-530 (656)
257 2ad6_A Methanol dehydrogenase 98.7 1.8E-06 6.1E-11 101.3 27.1 255 567-827 115-524 (571)
258 3v64_C Agrin; beta propeller, 98.7 1.9E-05 6.3E-10 86.6 33.7 238 555-801 33-277 (349)
259 3nol_A Glutamine cyclotransfer 98.7 1.6E-06 5.4E-11 90.4 23.3 179 641-829 43-244 (262)
260 1flg_A Protein (quinoprotein e 98.7 6.2E-06 2.1E-10 96.9 31.1 263 568-837 69-513 (582)
261 3v9f_A Two-component system se 98.7 1.5E-05 5.1E-10 96.9 34.6 269 556-837 211-521 (781)
262 3nok_A Glutaminyl cyclase; bet 98.7 2.5E-06 8.6E-11 88.9 23.4 191 588-789 44-255 (268)
263 3v65_B Low-density lipoprotein 98.6 2.1E-05 7.3E-10 87.4 31.2 237 558-803 79-322 (386)
264 3mbr_X Glutamine cyclotransfer 98.6 7.5E-06 2.6E-10 84.6 25.3 191 588-789 10-224 (243)
265 3mbr_X Glutamine cyclotransfer 98.6 9.6E-06 3.3E-10 83.8 25.9 182 638-829 16-223 (243)
266 1w6s_A Methanol dehydrogenase 98.6 1.2E-05 4.1E-10 94.6 30.0 251 570-827 124-534 (599)
267 3nok_A Glutaminyl cyclase; bet 98.6 3.1E-06 1.1E-10 88.2 21.4 177 641-828 55-253 (268)
268 3tc9_A Hypothetical hydrolase; 98.6 9.3E-06 3.2E-10 91.7 26.6 233 599-836 138-426 (430)
269 1flg_A Protein (quinoprotein e 98.6 1.5E-05 5.3E-10 93.5 29.4 256 567-827 117-547 (582)
270 2xbg_A YCF48-like protein; pho 98.6 8.7E-05 3E-09 80.4 33.1 276 542-837 24-319 (327)
271 3sov_A LRP-6, low-density lipo 98.5 4.2E-05 1.4E-09 82.7 29.2 227 569-802 6-241 (318)
272 3v64_C Agrin; beta propeller, 98.5 9.3E-05 3.2E-09 81.0 32.1 228 600-835 36-270 (349)
273 1ijq_A LDL receptor, low-densi 98.5 0.00016 5.4E-09 77.9 33.4 219 611-836 3-234 (316)
274 3p5b_L Low density lipoprotein 98.5 0.00021 7.2E-09 79.8 35.2 230 569-803 85-324 (400)
275 2xe4_A Oligopeptidase B; hydro 98.5 1.1E-05 3.6E-10 97.9 25.6 238 557-803 175-462 (751)
276 3qqz_A Putative uncharacterize 98.5 3.9E-05 1.3E-09 80.1 26.0 199 635-836 21-249 (255)
277 3v65_B Low-density lipoprotein 98.5 8E-05 2.7E-09 82.7 30.1 228 601-836 80-314 (386)
278 3tc9_A Hypothetical hydrolase; 98.4 8.2E-05 2.8E-09 83.9 28.8 235 557-798 138-429 (430)
279 3amr_A 3-phytase; beta-propell 98.4 7.4E-05 2.5E-09 81.0 26.6 185 566-753 39-262 (355)
280 4hw6_A Hypothetical protein, I 98.4 6.7E-05 2.3E-09 84.7 27.4 233 599-836 140-429 (433)
281 2xe4_A Oligopeptidase B; hydro 98.4 3.6E-05 1.2E-09 93.3 26.4 192 599-797 175-398 (751)
282 3p5b_L Low density lipoprotein 98.4 0.00038 1.3E-08 77.6 32.7 219 611-836 85-316 (400)
283 3sov_A LRP-6, low-density lipo 98.4 0.00027 9.4E-09 76.2 30.5 215 618-836 12-234 (318)
284 3qqz_A Putative uncharacterize 98.4 0.00089 3E-08 69.7 32.7 201 549-751 20-250 (255)
285 3m0c_C LDL receptor, low-densi 98.4 0.00037 1.3E-08 84.4 34.1 239 559-803 388-636 (791)
286 4hw6_A Hypothetical protein, I 98.3 0.00022 7.6E-09 80.4 27.8 235 556-798 139-432 (433)
287 3kya_A Putative phosphatase; s 98.2 0.00035 1.2E-08 79.6 27.4 233 599-836 140-471 (496)
288 1k3i_A Galactose oxidase precu 98.2 5.9E-05 2E-09 89.9 21.6 229 601-830 189-476 (656)
289 3m0c_C LDL receptor, low-densi 98.1 0.0018 6.1E-08 78.4 33.0 216 611-834 397-626 (791)
290 4a0p_A LRP6, LRP-6, low-densit 98.1 0.0023 7.8E-08 75.6 32.4 219 611-835 8-232 (628)
291 3kya_A Putative phosphatase; s 98.1 0.00081 2.8E-08 76.6 27.1 241 557-803 140-479 (496)
292 2ism_A Putative oxidoreductase 98.1 0.00071 2.4E-08 74.0 25.8 226 555-786 30-332 (352)
293 3s94_A LRP-6, low-density lipo 98.0 0.0011 3.8E-08 78.2 28.3 223 575-802 16-246 (619)
294 4a0p_A LRP6, LRP-6, low-densit 98.0 0.006 2.1E-07 72.0 33.9 224 569-801 8-239 (628)
295 3s94_A LRP-6, low-density lipo 98.0 0.005 1.7E-07 72.6 33.1 277 555-835 83-418 (619)
296 3a9g_A Putative uncharacterize 98.0 0.0039 1.3E-07 68.2 29.9 230 555-786 28-329 (354)
297 1n7d_A LDL receptor, low-densi 98.0 1.4E-05 4.7E-10 96.0 10.2 226 576-805 385-620 (699)
298 2xbg_A YCF48-like protein; pho 98.0 0.0016 5.5E-08 70.3 25.6 232 555-797 79-320 (327)
299 2p9w_A MAL S 1 allergenic prot 97.9 0.0022 7.5E-08 68.9 25.3 197 556-754 13-265 (334)
300 2xzh_A Clathrin heavy chain 1; 97.9 0.018 6E-07 61.5 31.1 234 560-803 71-336 (365)
301 3ott_A Two-component system se 97.9 0.02 6.9E-07 68.9 36.3 263 555-833 62-346 (758)
302 3amr_A 3-phytase; beta-propell 97.9 0.0028 9.6E-08 68.7 25.1 180 654-837 41-260 (355)
303 3ei3_A DNA damage-binding prot 97.9 0.052 1.8E-06 68.4 40.5 272 556-836 652-995 (1158)
304 2xzh_A Clathrin heavy chain 1; 97.9 0.034 1.2E-06 59.3 32.1 247 576-833 48-325 (365)
305 3sre_A PON1, serum paraoxonase 97.8 0.0028 9.5E-08 69.3 24.8 195 599-797 51-296 (355)
306 2p9w_A MAL S 1 allergenic prot 97.8 0.0063 2.2E-07 65.3 26.5 209 593-803 8-269 (334)
307 2ism_A Putative oxidoreductase 97.8 0.0044 1.5E-07 67.6 26.1 224 598-828 31-333 (352)
308 3ott_A Two-component system se 97.8 0.05 1.7E-06 65.4 37.9 267 556-836 146-444 (758)
309 2vpj_A Kelch-like protein 12; 97.8 0.0023 7.8E-08 67.6 22.8 228 566-804 14-283 (301)
310 3a9g_A Putative uncharacterize 97.8 0.0098 3.3E-07 65.0 28.0 226 597-828 28-330 (354)
311 2g8s_A Glucose/sorbosone dehyd 97.8 0.0059 2E-07 66.7 25.8 232 598-833 18-347 (353)
312 1bpo_A Protein (clathrin); cla 97.7 0.034 1.1E-06 61.5 30.3 234 560-803 70-335 (494)
313 2g8s_A Glucose/sorbosone dehyd 97.7 0.007 2.4E-07 66.1 25.3 226 557-785 19-339 (353)
314 1bpo_A Protein (clathrin); cla 97.7 0.11 3.6E-06 57.6 36.6 248 576-833 47-324 (494)
315 3das_A Putative oxidoreductase 97.7 0.029 9.9E-07 61.0 29.3 232 593-828 27-326 (347)
316 3ei3_A DNA damage-binding prot 97.6 0.047 1.6E-06 68.8 34.8 272 555-837 553-910 (1158)
317 3ii7_A Kelch-like protein 7; p 97.6 0.011 3.9E-07 62.4 24.7 227 568-803 13-276 (306)
318 1n7d_A LDL receptor, low-densi 97.6 0.0001 3.5E-09 88.4 9.5 214 617-836 384-610 (699)
319 2xn4_A Kelch-like protein 2; s 97.5 0.0081 2.8E-07 63.4 22.1 229 567-805 16-282 (302)
320 3das_A Putative oxidoreductase 97.5 0.055 1.9E-06 58.7 28.3 237 548-786 24-325 (347)
321 3sre_A PON1, serum paraoxonase 97.5 0.13 4.6E-06 55.9 31.0 201 549-753 43-297 (355)
322 3sbq_A Nitrous-oxide reductase 97.3 0.022 7.6E-07 64.7 23.2 257 570-828 73-453 (638)
323 2vpj_A Kelch-like protein 12; 97.3 0.01 3.5E-07 62.5 19.5 215 608-831 14-264 (301)
324 1zgk_A Kelch-like ECH-associat 97.3 0.011 3.7E-07 62.8 19.6 230 565-805 23-293 (308)
325 4asc_A Kelch repeat and BTB do 97.3 0.029 1E-06 59.5 23.0 228 569-805 7-283 (315)
326 2xn4_A Kelch-like protein 2; s 97.2 0.019 6.4E-07 60.5 20.6 213 610-831 17-262 (302)
327 3ii7_A Kelch-like protein 7; p 97.2 0.024 8.3E-07 59.8 21.5 210 610-830 13-257 (306)
328 4b8c_D Glucose-repressible alc 97.2 0.00013 4.4E-09 88.0 3.1 14 806-819 706-719 (727)
329 1cru_A Protein (soluble quinop 97.1 0.14 4.8E-06 57.8 27.5 155 598-753 27-258 (454)
330 3s25_A Hypothetical 7-bladed b 97.1 0.11 3.8E-06 55.2 25.3 234 564-828 22-280 (302)
331 4b8c_D Glucose-repressible alc 97.1 0.00015 5E-09 87.5 2.3 9 576-584 487-495 (727)
332 2woz_A Kelch repeat and BTB do 97.0 0.091 3.1E-06 55.7 23.6 227 569-805 18-293 (318)
333 2uvk_A YJHT; unknown function, 97.0 0.018 6.1E-07 62.3 17.9 231 566-804 19-347 (357)
334 3s25_A Hypothetical 7-bladed b 97.0 0.034 1.2E-06 59.3 19.6 195 607-827 23-240 (302)
335 1cru_A Protein (soluble quinop 96.9 0.36 1.2E-05 54.3 28.0 106 555-660 26-163 (454)
336 3pbp_A Nucleoporin NUP82; beta 96.9 0.062 2.1E-06 59.4 20.3 141 693-834 31-206 (452)
337 4asc_A Kelch repeat and BTB do 96.9 0.11 3.7E-06 55.0 22.3 210 611-830 7-253 (315)
338 2be1_A Serine/threonine-protei 96.8 0.012 4.2E-07 63.6 13.9 192 610-804 11-236 (339)
339 2be1_A Serine/threonine-protei 96.8 0.0088 3E-07 64.8 12.7 185 568-755 11-232 (339)
340 2woz_A Kelch repeat and BTB do 96.6 0.16 5.6E-06 53.7 21.5 210 611-830 18-263 (318)
341 1zgk_A Kelch-like ECH-associat 96.6 0.086 3E-06 55.7 18.7 215 608-831 24-273 (308)
342 3iot_A Maltose-binding protein 96.5 0.0022 7.4E-08 72.5 6.2 25 53-77 337-362 (449)
343 1xi4_A Clathrin heavy chain; a 96.4 0.079 2.7E-06 66.6 19.3 235 561-803 71-335 (1630)
344 2uvk_A YJHT; unknown function, 96.4 0.22 7.4E-06 53.6 20.9 185 566-756 65-344 (357)
345 1xi4_A Clathrin heavy chain; a 96.3 0.2 6.7E-06 63.1 21.7 218 576-803 47-293 (1630)
346 3pbp_A Nucleoporin NUP82; beta 96.2 0.28 9.7E-06 54.2 20.2 142 650-795 30-208 (452)
347 3b7f_A Glycosyl hydrolase, BNR 96.1 1.2 4.1E-05 48.6 25.7 255 555-818 54-391 (394)
348 1tl2_A L10, protein (tachylect 96.1 0.39 1.3E-05 48.4 18.8 174 653-834 4-204 (236)
349 2zwa_A Leucine carboxyl methyl 96.0 0.15 5.3E-06 60.7 18.8 222 608-829 397-674 (695)
350 1tl2_A L10, protein (tachylect 96.0 0.24 8.1E-06 50.0 16.9 177 608-793 3-204 (236)
351 2wg3_C Hedgehog-interacting pr 95.5 4.1 0.00014 45.7 29.7 231 557-787 15-354 (463)
352 4hvt_A Ritya.17583.B, post-pro 95.3 1.5 5.3E-05 52.1 23.6 235 563-803 137-433 (711)
353 3b7f_A Glycosyl hydrolase, BNR 95.3 4.2 0.00014 44.1 29.3 257 568-835 23-367 (394)
354 3uc1_A DNA gyrase subunit A; D 95.2 3.3 0.00011 44.3 23.6 261 568-831 4-321 (327)
355 2wg3_C Hedgehog-interacting pr 95.1 5.5 0.00019 44.7 29.1 229 598-828 14-354 (463)
356 3iot_A Maltose-binding protein 94.5 0.011 3.7E-07 66.6 1.8 8 57-64 337-344 (449)
357 2zwa_A Leucine carboxyl methyl 94.3 0.44 1.5E-05 56.7 15.5 151 566-717 451-639 (695)
358 3q6k_A 43.2 kDa salivary prote 94.1 8 0.00027 42.1 24.1 165 664-828 124-342 (381)
359 3qhy_B Beta-lactamase inhibito 93.9 1.8 6.2E-05 45.1 17.6 217 598-836 24-242 (282)
360 1suu_A DNA gyrase subunit A; t 93.9 7.7 0.00026 41.0 27.2 230 564-797 5-281 (312)
361 1wp5_A Topoisomerase IV; broke 93.9 5.9 0.0002 42.2 21.7 233 565-799 3-277 (323)
362 3kci_A Probable E3 ubiquitin-p 93.8 9.1 0.00031 41.6 28.9 229 599-836 54-341 (389)
363 3qhy_B Beta-lactamase inhibito 93.5 1.6 5.3E-05 45.7 16.1 240 557-821 25-265 (282)
364 4hvt_A Ritya.17583.B, post-pro 92.6 7.6 0.00026 46.1 22.0 222 602-828 133-415 (711)
365 1zi0_A DNA gyrase subunit A; b 92.6 12 0.0004 39.4 25.6 232 565-799 1-277 (307)
366 3l6v_A GYRA, DNA gyrase subuni 92.5 14 0.00048 40.1 25.8 233 563-798 3-315 (370)
367 3no0_A DNA gyrase subunit A; D 92.5 11 0.00036 39.2 20.6 197 598-799 24-246 (276)
368 3sbq_A Nitrous-oxide reductase 92.5 0.82 2.8E-05 52.1 12.4 126 640-767 322-490 (638)
369 1sqj_A OXG-RCBH, oligoxylogluc 92.1 16 0.00056 43.7 24.5 147 555-703 14-190 (789)
370 3l6v_A GYRA, DNA gyrase subuni 91.0 20 0.00069 38.8 23.5 225 605-833 3-309 (370)
371 3uc1_A DNA gyrase subunit A; D 90.7 19 0.00066 38.2 22.8 194 557-753 43-278 (327)
372 1zi0_A DNA gyrase subunit A; b 90.3 20 0.00068 37.7 24.0 223 608-834 2-271 (307)
373 3mvd_K Regulator of chromosome 90.3 24 0.00081 38.6 35.8 226 599-836 76-370 (423)
374 1suu_A DNA gyrase subunit A; t 90.1 21 0.00071 37.6 24.5 189 607-799 6-231 (312)
375 1sqj_A OXG-RCBH, oligoxylogluc 89.6 41 0.0014 40.2 25.4 144 597-743 14-188 (789)
376 3kci_A Probable E3 ubiquitin-p 87.7 34 0.0012 37.0 31.4 234 558-799 55-345 (389)
377 3no0_A DNA gyrase subunit A; D 87.5 28 0.00097 35.9 21.9 194 556-753 24-245 (276)
378 1wp5_A Topoisomerase IV; broke 85.1 42 0.0014 35.5 24.5 225 607-834 3-271 (323)
379 2cn3_A Xyloglucanase, beta-1,4 84.0 75 0.0026 37.5 25.5 103 557-660 24-151 (737)
380 4d9s_A UVB-resistance protein 83.6 54 0.0018 35.6 35.4 267 556-836 16-353 (406)
381 1uuj_A Platelet-activating fac 83.0 0.52 1.8E-05 39.9 2.1 32 10-41 11-42 (88)
382 2xtc_A F-box-like/WD repeat-co 82.6 0.95 3.2E-05 38.5 3.5 32 11-42 7-38 (90)
383 4gq2_M Nucleoporin NUP120; bet 76.8 1.4E+02 0.005 36.3 23.8 38 684-721 237-274 (950)
384 3q6k_A 43.2 kDa salivary prote 76.5 89 0.0031 33.8 24.2 165 578-743 124-342 (381)
385 2cn3_A Xyloglucanase, beta-1,4 75.9 1.3E+02 0.0045 35.4 24.5 103 598-702 23-152 (737)
386 4gq2_M Nucleoporin NUP120; bet 69.2 81 0.0028 38.6 17.2 38 556-593 236-273 (950)
387 1a12_A RCC1, regulator of chro 60.7 1.8E+02 0.0063 31.2 33.4 226 598-836 59-361 (413)
388 4d9s_A UVB-resistance protein 59.6 1.9E+02 0.0065 31.0 35.2 231 556-798 68-356 (406)
389 3zwu_A Alkaline phosphatase PH 51.8 1E+02 0.0035 35.5 12.7 58 685-742 478-548 (592)
390 4a9v_A PHOX; hydrolase, beta-p 50.8 1.7E+02 0.0057 33.5 14.0 59 685-743 478-549 (592)
391 3mez_B Mannose-specific lectin 50.6 1E+02 0.0036 26.7 10.1 59 695-754 25-84 (113)
392 2zux_A YESW protein; beta-prop 50.0 3.3E+02 0.011 31.0 27.3 228 554-801 177-481 (591)
393 3a0f_A Xyloglucanase; beta-pro 45.2 4.4E+02 0.015 31.0 25.5 147 596-745 19-203 (763)
394 1zvt_A Topoisomerase IV subuni 44.7 2.6E+02 0.0088 28.1 14.1 142 569-713 4-163 (256)
395 4h3o_A Lectin; cadmium, plant 42.3 1.5E+02 0.005 25.4 9.5 25 729-754 54-78 (105)
396 4a9v_A PHOX; hydrolase, beta-p 42.1 3.2E+02 0.011 31.3 14.5 61 642-702 477-550 (592)
397 3of7_A Regulator of chromosome 41.5 3.9E+02 0.013 29.3 29.8 191 598-798 148-404 (473)
398 4fhn_B Nucleoporin NUP120; pro 40.3 5E+02 0.017 32.2 17.6 37 685-721 240-276 (1139)
399 3zwu_A Alkaline phosphatase PH 36.6 75 0.0026 36.6 8.5 58 558-615 478-548 (592)
400 3a0f_A Xyloglucanase; beta-pro 35.0 6.1E+02 0.021 29.7 31.1 149 554-704 19-203 (763)
401 3hx6_A Type 4 fimbrial biogene 33.7 5.7E+02 0.02 29.0 18.7 147 567-714 85-285 (570)
402 1zvt_A Topoisomerase IV subuni 31.1 4.2E+02 0.014 26.5 17.0 141 611-754 4-163 (256)
403 3mvd_K Regulator of chromosome 30.5 5.2E+02 0.018 27.5 37.1 190 556-754 127-374 (423)
404 4fhn_B Nucleoporin NUP120; pro 28.4 42 0.0014 42.0 4.9 39 556-594 238-276 (1139)
405 3f7f_A Nucleoporin NUP120; nuc 26.0 84 0.0029 37.0 6.5 38 556-595 222-259 (729)
406 3mez_A Mannose-specific lectin 24.0 1.1E+02 0.0038 26.5 5.6 25 728-752 52-76 (111)
407 2zux_A YESW protein; beta-prop 23.8 8.4E+02 0.029 27.7 19.9 153 639-803 177-404 (591)
408 3of7_A Regulator of chromosome 23.7 7.3E+02 0.025 26.9 29.2 147 641-797 148-339 (473)
409 3f7f_A Nucleoporin NUP120; nuc 22.6 9.7E+02 0.033 28.0 15.3 37 642-681 223-259 (729)
410 3ct5_A Morphogenesis protein 1 22.1 56 0.0019 30.7 3.3 32 11-42 16-52 (159)
411 3dzw_A Agglutinin; lectin, man 21.2 3.8E+02 0.013 22.7 10.5 25 728-753 52-76 (109)
412 2d68_A FOP, FGFR1OP; alpha hel 21.0 87 0.003 26.0 3.8 32 10-41 19-50 (82)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.6e-41 Score=373.66 Aligned_cols=289 Identities=19% Similarity=0.366 Sum_probs=264.3
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
.+.....+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC---ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEE
Q 003236 624 WDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILA 699 (837)
Q Consensus 624 WDl~~~~---~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~lla 699 (837)
||+.+.. .....+.+|...|.++.|++++. +++++.|+.|++||+++++++..+.. ...|.+++|+|++.++++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9998754 24567789999999999998753 66889999999999999999888874 567999999999999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEE
Q 003236 700 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVF 776 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~sv~f 776 (837)
++.|+.|++||++++.++..+.+|...|++++|+|++.+|++++ |+.|+|||++++ ..+..+.. +...|.+++|
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEE
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEE
Confidence 99999999999999999999999999999999999999999999 999999999887 45554442 2347999999
Q ss_pred eCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 777 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 777 spdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus 279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999988877 7789999999999999999999999999999997
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-42 Score=388.34 Aligned_cols=284 Identities=26% Similarity=0.486 Sum_probs=266.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
..+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++....+.+|.+.|.+++|+|++++|++|+.|++|+|||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
.. ++..+.+|...|.+++|+|++. ++++|+.|++|++||++++.++..+.. ...+.++.+++++..+++++.|+.|+
T Consensus 182 ~~-~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FE-CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp SC-EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred Cc-eeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 55 5788899999999999999976 566999999999999999999988875 45699999999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCEEEEEEcCC--------------------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003236 708 ILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 708 iwDl~s~~~~~~l~~h~~~V~sl~~spd--------------------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
+||++++.+...+.+|...|.+++|+|+ +.+|++++ |+.|++||++++ .++..+.+
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~ 336 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVG 336 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEEC
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEEC
Confidence 9999999999999999999999999996 67899998 999999999987 78889999
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 767 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 767 ~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++.+|++|+.||+|+|||
T Consensus 337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 9999999999999999999999999999999988866 7789999999999999999999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-41 Score=366.34 Aligned_cols=285 Identities=18% Similarity=0.328 Sum_probs=261.3
Q ss_pred EEEecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEeCCCCeE--EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 548 FQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~--~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
+..+.+|.+.|++|+|+++ +.+||+|+.|++|+||++.+.+. ...+.+|...|.+++|++++.++++++.|++|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 4667899999999999984 67999999999999999887654 45688999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEE
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llag 700 (837)
++||+.+++ .+..+..|...+.+++|+|++. +|++++.|+.|++||+++++....+.. ...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~-~~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGK-QIKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTE-EEEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCC-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 999999865 4777888899999999999977 666899999999999999988877765 4569999999999999999
Q ss_pred EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003236 701 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd 779 (837)
+.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|+|||++++ ..+..+..|...|.+++|+|+
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp~ 259 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCPD 259 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTT
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECCC
Confidence 9999999999999999999999999999999999999999999 999999999887 677888999999999999999
Q ss_pred CCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 780 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.+|++++.|+.|+|||+.+++++ .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 260 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 260 DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 999999999999999999999887 6779999999999999999999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.8e-40 Score=364.46 Aligned_cols=289 Identities=17% Similarity=0.280 Sum_probs=261.5
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
......+.+|.+.|+|++|+|++++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCC-----ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEec--CCCE
Q 003236 625 DTENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQP--RLGR 696 (837)
Q Consensus 625 Dl~~~~-----~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp--~g~~ 696 (837)
++.... .....+.+|...|.+++|+|++. .+++++.|++|++||+++++++..+.. ...+.++.|+| ++..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 986432 23566778999999999999976 566899999999999999999988874 56789999987 4689
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--CCceEE
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--GNKFHS 773 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~s 773 (837)
|++++.|+.|++||+++++++..+.+|...|++++|+|++.+|++++ |+.|++||++.. ..+..+..+ ...+.+
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~ 289 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGASS 289 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCcccceeE
Confidence 99999999999999999999999999999999999999999999999 999999999886 444444432 357899
Q ss_pred EEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 774 CVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|++++|+|++++|++|+.||+|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999999888876 6789999999999999999999999999999997
No 5
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.2e-41 Score=376.32 Aligned_cols=291 Identities=17% Similarity=0.337 Sum_probs=260.8
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
.....+++.+|.+.|++++|+|++++||+|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|+|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe------cCCCeeEEEEe
Q 003236 624 WDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------CQSGATQMRFQ 691 (837)
Q Consensus 624 WDl~~~~------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~------~~~~i~sl~~s 691 (837)
||+.+.. .....+.+|...|.++.|.|++...|++|+.|++|++||+.+++++..+. +...+.++.|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9987532 13456789999999999999877778899999999999999999887763 34568999998
Q ss_pred c-CCCEEEEEEcCCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003236 692 P-RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 768 (837)
Q Consensus 692 p-~g~~llags~dg~I~iwDl~-s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 768 (837)
+ ++..+++++.|+.|++||++ ....+..+.+|...|++++|+|++.+|++++ |+.|+|||++++ .++..+..+.
T Consensus 215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~ 291 (380)
T 3iz6_a 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREP 291 (380)
T ss_dssp SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCC
T ss_pred cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccc
Confidence 7 78899999999999999998 4577888999999999999999999999999 999999999987 5555554332
Q ss_pred -------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Ee----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 769 -------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 769 -------~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l----~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
..+.+++|+|++.+|++++.|+.|++||+..++.+ .+ .+|.+.|++++|+|++.+|++|+.||+|+||
T Consensus 292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 24889999999999999999999999999988876 33 5799999999999999999999999999999
Q ss_pred C
Q 003236 837 K 837 (837)
Q Consensus 837 d 837 (837)
+
T Consensus 372 ~ 372 (380)
T 3iz6_a 372 A 372 (380)
T ss_dssp E
T ss_pred e
Confidence 6
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.7e-39 Score=349.02 Aligned_cols=284 Identities=18% Similarity=0.310 Sum_probs=254.0
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
....++.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++++|++|+.|++|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 34667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEEEEec-CCCEEEEEEc
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQP-RLGRILAAAI 702 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~sl~~sp-~g~~llags~ 702 (837)
+.+++ .+..+.+|...|.+++|+|++. ++++|+.|++|++||++++. +...+. +...|.+++|+| ++..|++++.
T Consensus 84 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGE-KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCc-EEEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 99876 4788899999999999999976 66799999999999998874 444454 456799999999 5789999999
Q ss_pred CCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 703 ENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
|+.|++||++.......+. +|...|..++|+| ++.+|++++ |+.|+|||++++ .++..+.+|...|.+++|+|
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECC
Confidence 9999999998876655554 5668899999987 778999999 999999999987 78999999999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCC--EEEEEECCCcEE
Q 003236 779 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK 834 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~--~LaSgs~DG~I~ 834 (837)
++.+|++++.|+.|++||+.+++.+ .+..|...+++++|+|++. +|++|++||.+.
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 9999999999999999999999887 6778899999999999885 688888777543
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.3e-39 Score=349.40 Aligned_cols=289 Identities=19% Similarity=0.334 Sum_probs=251.8
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCC-----CeEEEEeccCCCCeEEEEEcCCCCEEEEE
Q 003236 542 GFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (837)
Q Consensus 542 g~~~~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~I~~l~fspdg~~Latg 615 (837)
...+....++.+|.+.|++++|+|++ ++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|++|
T Consensus 4 ~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 34566778899999999999999965 8999999999999999763 34567889999999999999999999999
Q ss_pred eCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecC--
Q 003236 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR-- 693 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~-- 693 (837)
+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. ++++++.|+.|++||++.........+...+.++.|.|.
T Consensus 84 s~D~~v~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 84 SWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEK 161 (319)
T ss_dssp ETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC--
T ss_pred eCCCEEEEEECCCCC-eeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCC
Confidence 999999999999866 4788899999999999999976 667999999999999985544444445677999999985
Q ss_pred ----CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC
Q 003236 694 ----LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 768 (837)
Q Consensus 694 ----g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~ 768 (837)
+..+++++.|+.|++||+++.+....+.+|...|.+++|+|++.+|++++ |+.|+|||+.++ .++..+.. .
T Consensus 162 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-~ 237 (319)
T 3frx_A 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-Q 237 (319)
T ss_dssp ----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-C
T ss_pred CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-C
Confidence 44899999999999999999999999999999999999999999999999 999999999987 66666664 4
Q ss_pred CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-e--------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 769 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 769 ~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l--------~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..|.+++|+|++.+|++++. +.|++|++.....+. + ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus 238 ~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence 68999999999998877765 469999998876652 2 23567899999999999999999999999996
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.6e-39 Score=383.70 Aligned_cols=333 Identities=17% Similarity=0.276 Sum_probs=270.8
Q ss_pred CCCccccCCCeEEcccCCCceEEeecCCCCCCC------------------------------CccccccccCCCeeeeE
Q 003236 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPR------------------------------DRVGRSAEVGKGFTFTE 547 (837)
Q Consensus 498 ~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~------------------------------~~~~~~~~~~~g~~~~~ 547 (837)
....+.+...++++|+.|++|++|......... +..+.++.++.+. .
T Consensus 63 ~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~---~ 139 (611)
T 1nr0_A 63 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---S 139 (611)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---B
T ss_pred EEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCC---C
Confidence 344455667899999999999999764321100 0001122222221 2
Q ss_pred EEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
...+.+|.+.|++++|+|++. +|++|+.|++|++||..++++..++.+|...|.+++|+|++++|++++.|++|+|||+
T Consensus 140 ~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 140 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence 345789999999999999987 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEee-------ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-------------------
Q 003236 627 ENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------- 680 (837)
Q Consensus 627 ~~~~~~~~~~~-------~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~------------------- 680 (837)
.+++. +..+. +|...|.+++|+|++. +|++++.|++|++||+.+++++..+.
T Consensus 220 ~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 220 VDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp TTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred CCCcE-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 88664 45552 7999999999999976 66799999999999999887665432
Q ss_pred -------------------------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE-c-------------
Q 003236 681 -------------------------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-Q------------- 721 (837)
Q Consensus 681 -------------------------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l-~------------- 721 (837)
+...|.+++|+|++.+|++++.|+.|++||+.++.+...+ .
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 377 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECC
Confidence 2456899999999999999999999999999876443221 0
Q ss_pred --------------------------------------------------------------------CCCCCEEEEEEc
Q 003236 722 --------------------------------------------------------------------GHKNQVHSVCWN 733 (837)
Q Consensus 722 --------------------------------------------------------------------~h~~~V~sl~~s 733 (837)
.|...+.+++|+
T Consensus 378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s 457 (611)
T 1nr0_A 378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 457 (611)
T ss_dssp TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe
Confidence 123457889999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC-CcEEE---eccC
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTLT---LSAH 808 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s-~~~~~---l~~h 808 (837)
||+++|++++ |+.|+|||+.++.. ..+.. ..|...|.+++|+|++++|++++.|++|++||+.+ +++.. +..|
T Consensus 458 pdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H 535 (611)
T 1nr0_A 458 NDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 535 (611)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC
T ss_pred CCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec
Confidence 9999999999 99999999987521 22333 67889999999999999999999999999999987 55542 2349
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 809 DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 809 ~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
...|++++|+||+++||+|+.|++|+|||
T Consensus 536 ~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 536 TAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 99999999999999999999999999996
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=354.08 Aligned_cols=292 Identities=25% Similarity=0.432 Sum_probs=250.3
Q ss_pred eeEEEEecCCCC-CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE---EeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 545 FTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 545 ~~~~~~l~~H~~-~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~---~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
+..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++++.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 456788999998 99999999999999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEEcCCCCc-eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eeEEe-cCCCeeEEEEecCCC
Q 003236 621 VRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK-CQSGATQMRFQPRLG 695 (837)
Q Consensus 621 I~IWDl~~~~~-~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~---i~~~~-~~~~i~sl~~sp~g~ 695 (837)
|+|||+..... .+..+.+|...|.+++|+|++. +|++|+.|+.|++||+.++.. +..+. +...|.+++|+|++.
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 99999987653 4678889999999999999976 677999999999999987643 33443 356799999999999
Q ss_pred EEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------cee
Q 003236 696 RILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 760 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~--~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~------------~~~ 760 (837)
+|++++.|+.|++||++++. +...+.+|...|.+++|+|++.+|++++ |+.|+|||...... ..+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 99999999999999998874 5578889999999999999999999999 99999999743221 133
Q ss_pred EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------EE--EeccCCCCeeEEEEeCCC-CEEEEEE
Q 003236 761 IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TL--TLSAHDKLVSSLAASTVN-GMVASAS 828 (837)
Q Consensus 761 i~~~~~-~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--------~~--~l~~h~~~V~sla~spdg-~~LaSgs 828 (837)
+..+.. |...|.+++|+|++..|++++.|+.|++|+...+. .. ...+|...|++++|+|++ .+||+|+
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 444544 77899999999999999999999999999987543 11 235899999999999998 5999999
Q ss_pred CCCcEEEeC
Q 003236 829 HDKCVKIWK 837 (837)
Q Consensus 829 ~DG~I~IWd 837 (837)
.||+|+|||
T Consensus 324 ~Dg~v~~W~ 332 (345)
T 3fm0_A 324 DDGEVAFWK 332 (345)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEE
Confidence 999999996
No 10
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=8.3e-39 Score=359.31 Aligned_cols=282 Identities=28% Similarity=0.455 Sum_probs=251.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCC------------------CeEEEEEcCCCCEEEE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT 614 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~------------------~I~~l~fspdg~~Lat 614 (837)
+|.+.|+|++|+|||++||+|+ +++++||++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 68999999999998888765542 4999999999999999
Q ss_pred EeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEec-C
Q 003236 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP-R 693 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp-~ 693 (837)
|+.|++|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||++++++...+.....+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence 9999999999999765 4778899999999999999977 56699999999999999999999998888999999999 8
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEE-------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------
Q 003236 694 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------- 757 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~~~~~~l-------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-------- 757 (837)
+.+|++++.|+.|++||++++..+..+ .+|...|.+++|+|++.+|++++ |+.|++||+++...
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 899999999999999999999887776 57899999999999999999999 99999999976421
Q ss_pred -ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeC------CCCEEEEEEC
Q 003236 758 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH 829 (837)
Q Consensus 758 -~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~sp------dg~~LaSgs~ 829 (837)
..+...+.+|...|.+++|++++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++ ++.+||+|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence 2456677889999999999999999999999999999999999877 6789999999999986 6889999999
Q ss_pred CCcEEEeC
Q 003236 830 DKCVKIWK 837 (837)
Q Consensus 830 DG~I~IWd 837 (837)
||+|+|||
T Consensus 379 Dg~i~iW~ 386 (393)
T 1erj_A 379 DCKARIWK 386 (393)
T ss_dssp TSEEEEEE
T ss_pred CCcEEECc
Confidence 99999996
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.6e-39 Score=383.67 Aligned_cols=306 Identities=22% Similarity=0.341 Sum_probs=259.9
Q ss_pred eEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC
Q 003236 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (837)
Q Consensus 508 ~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~ 587 (837)
.+++|+.|++|++|.... ......+.+|.+.|++++|+|||++||+|+.|++|+|||+.++
T Consensus 162 ~l~s~s~D~~v~lwd~~~-------------------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPP-------------------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp EEEEEETTSCEEEEETTT-------------------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCeEEEEECCC-------------------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 589999999999995321 2345678899999999999999999999999999999999999
Q ss_pred eEEEEec-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce----------------------------
Q 003236 588 TVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS---------------------------- 632 (837)
Q Consensus 588 ~~~~~l~-------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~---------------------------- 632 (837)
+.+..+. +|.+.|.+++|+|++++|++++.|++|+|||+.+++..
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 9988884 79999999999999999999999999999999865421
Q ss_pred --------------eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-------------------
Q 003236 633 --------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------------------- 679 (837)
Q Consensus 633 --------------~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~------------------- 679 (837)
...+.+|...|.+++|+|++. +|++++.|+.|++||+.++.+...+
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 234457999999999999977 5669999999999999876543221
Q ss_pred ----------------------------------------------------------------ecCCCeeEEEEecCCC
Q 003236 680 ----------------------------------------------------------------KCQSGATQMRFQPRLG 695 (837)
Q Consensus 680 ----------------------------------------------------------------~~~~~i~sl~~sp~g~ 695 (837)
.+...+.+++|+|++.
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 0113467899999999
Q ss_pred EEEEEEcCCeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE--eecCCCc
Q 003236 696 RILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE--LSCTGNK 770 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~--~~~~~~~ 770 (837)
+|++++.|+.|++||+..+.. +.. .+|...|++++|+|++++|++++ |+.|++||+.+.. ..+.. +..|...
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~ 538 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAK 538 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSC
T ss_pred EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccc
Confidence 999999999999999987643 333 57999999999999999999999 9999999998732 33332 3348899
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--E-EEeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENK--T-LTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--~-~~l~~h-~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|.+++|+|++++|++++.|++|+|||+.++. . ..+.+| ...|++++|+|++. |++++.||+|+|||
T Consensus 539 V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~ 608 (611)
T 1nr0_A 539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN 608 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred eeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence 9999999999999999999999999998765 2 355688 89999999999998 99999999999996
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.3e-38 Score=339.60 Aligned_cols=288 Identities=24% Similarity=0.459 Sum_probs=258.7
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
+....++.+|.+.|++++|+|++++||+|+.||.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d 703 (837)
|+.+++ .+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++++..+.. ...+.+++|+|++..+++++.|
T Consensus 93 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
T 4ery_A 93 DVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170 (312)
T ss_dssp ETTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCc-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 999866 4788899999999999999976 667999999999999999998888764 5679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCce---EEEEEeC
Q 003236 704 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF---HSCVFHP 778 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I---~sv~fsp 778 (837)
+.|++||+++++.+..+. .+...+.+++|+|++.+|++++ |+.|++||++++ .++..+..|...+ ......+
T Consensus 171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence 999999999998877764 4667899999999999999999 999999999887 6777777766543 2233346
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 003236 779 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs--~DG~I~IWd 837 (837)
++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++ .|+.|+||+
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 7889999999999999999999887 7789999999999999999999997 699999996
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4e-38 Score=346.64 Aligned_cols=287 Identities=18% Similarity=0.355 Sum_probs=243.6
Q ss_pred eeeEEEEecCCCCCeEEEEE-----cC-CCCEEEEEECCCcEEEEeCCC-------CeEEEEeccCCCCeEEEEEcCCCC
Q 003236 544 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS 610 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~f-----Sp-dg~~Lasgs~Dg~I~VWd~~t-------~~~~~~l~~h~~~I~~l~fspdg~ 610 (837)
.+.....+.+|.+.|++++| ++ |+++||+|+.|++|+|||+.+ +.....+.+|...|.+++|+|++.
T Consensus 10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~ 89 (343)
T 2xzm_R 10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC 89 (343)
T ss_dssp EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence 34567789999999999999 77 999999999999999999874 356678899999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE---ecCCCeeE
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KCQSGATQ 687 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~---~~~~~i~s 687 (837)
+|++++.|++|+|||+.++. .+..+.+|...|.+++|+|++. ++++++.|+.|++||+......... .+...+.+
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEEETTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 99999999999999999866 4788899999999999999977 5668999999999999844332222 23556999
Q ss_pred EEEecCC----------CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003236 688 MRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 688 l~~sp~g----------~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
++|+|++ .++++++.|+.|++|| ........+.+|...|.+++|+|++++|++++ |+.|+|||+....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 9999986 6899999999999999 45677788889999999999999999999999 9999999995542
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---Eec-----------cCCCCeeEEEEeCCCC
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNG 822 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~l~-----------~h~~~V~sla~spdg~ 822 (837)
.....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++.. .+. +|...|.+++|+|+++
T Consensus 247 --~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 247 --YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp --SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred --ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 222233 2456799999999998665 566888999999876533 222 6788999999999999
Q ss_pred EEEEEECCCcEEEeC
Q 003236 823 MVASASHDKCVKIWK 837 (837)
Q Consensus 823 ~LaSgs~DG~I~IWd 837 (837)
+|++|+.||.|+|||
T Consensus 323 ~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFS 337 (343)
T ss_dssp CEEEEETTSEEEEEE
T ss_pred eEEEecCCceEEEEE
Confidence 999999999999996
No 14
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.1e-37 Score=363.13 Aligned_cols=306 Identities=27% Similarity=0.445 Sum_probs=269.5
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+...++++++.|+.+++|.... ..+..+.+|...|++++|+|++++|++++.|+.|++
T Consensus 270 ~~~d~~~l~~~~~d~~i~~w~~~~--------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 270 FRPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTS--------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EcCCCCEEEEEeCCCEEEEEeCCC--------------------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 344567889999999999995321 134567899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
||... ..+..+..|...|.+++|+|++++|++++.|+.|++||... ..+..+.+|...|.+++|+|++. +|++++.
T Consensus 330 w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~-~l~~~~~ 405 (577)
T 2ymu_A 330 WNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQ-TIASASD 405 (577)
T ss_dssp EETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--CEEEEEECCSSCEEEEEECTTSS-CEEEEET
T ss_pred EeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--CEEEEecCCCCCeEEEEECCCCC-EEEEEeC
Confidence 99765 45667889999999999999999999999999999999653 34788889999999999999987 5568889
Q ss_pred CCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 003236 662 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~La 740 (837)
|+.|++||.. ++.+..+. +...|.+++|+|++.++++++.|+.|++||. +++.+..+.+|...|++++|+|++++|+
T Consensus 406 d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 406 DKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp TSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred CCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 9999999965 55555554 4678999999999999999999999999996 4677888899999999999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeC
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST 819 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~sp 819 (837)
+++ |+.|+|||.. + .++..+..|...|++++|+|++++|++++.|+.|+|||.....+..+.+|.+.|++++|+|
T Consensus 484 s~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~ 559 (577)
T 2ymu_A 484 SASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 559 (577)
T ss_dssp EEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT
T ss_pred EEeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcC
Confidence 998 9999999953 3 6788899999999999999999999999999999999975544448889999999999999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 003236 820 VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 820 dg~~LaSgs~DG~I~IWd 837 (837)
|+++|+|++.||+|+|||
T Consensus 560 dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 560 DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEeCCCEEEEeC
Confidence 999999999999999998
No 15
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=349.74 Aligned_cols=279 Identities=15% Similarity=0.210 Sum_probs=235.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-----------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
.|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4667799999999999999887 77888886321 01111122356789999999984 78899999999
Q ss_pred EEEEcCCCCcee---EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCC-E
Q 003236 622 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 696 (837)
Q Consensus 622 ~IWDl~~~~~~~---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~-~ 696 (837)
+|||+.+++... ....+|...|.+++|+|++. +|++|+.|++|++||+++++++..+.. ...|.+++|++++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999876432 23558999999999999976 667999999999999999999998874 67799999999875 6
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
+++++.|+.|++||++++++...+. .|...+.+++|+|+ +.+|++++ |+.|+|||++++ +++..+..|...|+
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~ 261 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT 261 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence 7889999999999999998877764 35668999999985 56888888 999999999987 67888999999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 003236 773 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWd 837 (837)
+++|+|++ .+|++++.|++|+|||+.+++++.+.+|.+.|++++|+|++. +|++|+.||+|++|+
T Consensus 262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 99999998 578899999999999999999999999999999999999986 678999999999995
No 16
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=341.31 Aligned_cols=289 Identities=21% Similarity=0.331 Sum_probs=237.6
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC--eEEEEe-cc-CCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l-~~-h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
+..+..+.+|.+.|++++|+++ +||+|+.|++|+|||+.++ ..+..+ .. |...|.+++|+|++++|++++.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3457788999999999999988 9999999999999999874 455666 44 9999999999999999999999999
Q ss_pred EEEEEcCCC------CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeeEEe-cCCCeeEEE
Q 003236 621 VRVWDTENP------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGATQMR 689 (837)
Q Consensus 621 I~IWDl~~~------~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~~-~~~~i~sl~ 689 (837)
|+|||+... ...+..+.+|...|.+++|+|++. +|++|+.|+.|++||++.. +++..+. +...|.+++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999998642 124567889999999999999976 6779999999999999532 4555554 456799999
Q ss_pred EecCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCc-----e
Q 003236 690 FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKG-----E 759 (837)
Q Consensus 690 ~sp~g~~llags~dg~I~iwDl~s~--~~~~~l~~h~~~V~sl~~spd--g~~Lasgs-Dg~I~IwDl~s~~~~-----~ 759 (837)
|+|++.+|++++.|+.|++||..++ +++..+.+|...|.+++|+|+ +.+|++++ |++|+|||+..+... .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678889999999999999998 67899988 999999999754211 2
Q ss_pred eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE--E-E-eccCCC-CeeEEEEeC--CCCEEEEEECCC
Q 003236 760 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--L-T-LSAHDK-LVSSLAAST--VNGMVASASHDK 831 (837)
Q Consensus 760 ~i~~~~~-~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~--~-~-l~~h~~-~V~sla~sp--dg~~LaSgs~DG 831 (837)
+...+.. |...|.+++|++++ .|++++.|+.|+|||..+++. . . ...|.. .|.+++|+| ++.+||+|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 3444444 78899999999765 799999999999999988742 3 2 357877 899999999 688999999999
Q ss_pred cEEEeC
Q 003236 832 CVKIWK 837 (837)
Q Consensus 832 ~I~IWd 837 (837)
+|+|||
T Consensus 320 ~v~~W~ 325 (330)
T 2hes_X 320 IVNFWS 325 (330)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-38 Score=352.19 Aligned_cols=281 Identities=13% Similarity=0.165 Sum_probs=236.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEEC------CCcEEEEeCCCCeEE----EEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 552 PASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~------Dg~I~VWd~~t~~~~----~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
..|...|++|+|||||++||+|+. |+.|++|+..++... .....|...|++++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 479999999999999999999997 778999998776543 23346889999999999975 5677899999
Q ss_pred EEEEcCCCCcee---EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCC-E
Q 003236 622 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLG-R 696 (837)
Q Consensus 622 ~IWDl~~~~~~~---~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~-~ 696 (837)
+|||+.+++... ....+|...|.+++|+|++. +|++++.|+.|++||+++++++..+.. ...|.+++|++++. .
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence 999998765322 34457999999999999976 566999999999999999999988875 56799999999875 6
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEE--cCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 697 ILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l--~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
+++++.|+.|++||+++++++..+ ..|...|++++|+|++ .+|++++ |+.|++||++++ .++..+..|...|.
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v~ 273 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNIT 273 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCEE
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeEE
Confidence 888999999999999998766554 3467789999999974 6788887 999999999987 67788889999999
Q ss_pred EEEEeCCC-CEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003236 773 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fspdg-~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~sp-dg~~LaSgs~DG~I~IWd 837 (837)
+++|+|++ .+|++++.|++|+|||+.+++++...+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus 274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 99999987 578899999999999999999998889999999999998 789999999999999996
No 18
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-37 Score=335.33 Aligned_cols=284 Identities=17% Similarity=0.246 Sum_probs=254.3
Q ss_pred EEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
....+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeee-----------eEEe-cCC--CeeE
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCA-----------GVFK-CQS--GATQ 687 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i-----------~~~~-~~~--~i~s 687 (837)
.+++. +..+. +...|.+++|+|++.. +++++.+ +.|++||+...... ..+. +.. .+.+
T Consensus 104 ~~~~~-~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 104 SNGQC-VATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTCCE-EEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCcE-EEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 98764 55555 8899999999999875 4566667 99999999765422 1222 122 7999
Q ss_pred EEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee
Q 003236 688 MRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 688 l~~sp~g~~llags~dg~I~iwDl~s-~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~ 765 (837)
++|+|++..+++++.|+.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+.
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~ 257 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKYE 257 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeeec
Confidence 99999999999999999999999999 788999999999999999999999999998 999999999987 5555555
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~dg--------------~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
+...+..++|+|++.++++++.++ .|++||+.+++.+ .+.+|...|++++|+|++++|++++.|
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 678899999999999999999988 8999999999887 677899999999999999999999999
Q ss_pred CcEEEeC
Q 003236 831 KCVKIWK 837 (837)
Q Consensus 831 G~I~IWd 837 (837)
|.|+|||
T Consensus 337 g~v~iw~ 343 (369)
T 3zwl_B 337 GFIRLHH 343 (369)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 19
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8e-37 Score=334.07 Aligned_cols=271 Identities=20% Similarity=0.291 Sum_probs=248.5
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|++|++|..... .......+.+|...|.+++|++++.++++++.|++|+|||+.
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~-----------------~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~ 110 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDE-----------------RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCCEEEEECCCC-----------------CeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 468999999999999965322 123345688999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
+++.+..+..|...+.+++|+|++++|++++.|+.|++||+.++.. ...+..|...|.+++|+|++. +|++++.|+.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i 188 (321)
T 3ow8_A 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDGII 188 (321)
T ss_dssp TTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCCeE
Confidence 9999999999999999999999999999999999999999998764 667788899999999999977 66689999999
Q ss_pred EEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||++++..+..+.+|...|.+++|+|++.+|++++
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 9999999999888874 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
|+.|+|||+.++ .++..+..|...|.+++|+|++.+|++++.|+.|+|||+.
T Consensus 269 D~~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 269 DKSVKVWDVGTR---TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEeCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999987 8889999999999999999999999999999999999963
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.6e-36 Score=353.79 Aligned_cols=306 Identities=26% Similarity=0.445 Sum_probs=270.4
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+...++++++.|+.+++|.... ..+..+.+|...|++++|+|++++|++++.|+.|++
T Consensus 229 ~s~dg~~l~~~~~d~~i~~w~~~~--------------------~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~ 288 (577)
T 2ymu_A 229 FSPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKL 288 (577)
T ss_dssp ECTTSSCEEEEETTSCEEEECTTS--------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCC--------------------CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 344556788899999999994311 245677899999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
||. +++....+.+|...|.+++|+|++.+|++++.|++|++||+... .+..+.+|...|.+++|+|++. ++++++.
T Consensus 289 w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~ 364 (577)
T 2ymu_A 289 WNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASASD 364 (577)
T ss_dssp EET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred EeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEEeC
Confidence 996 46778889999999999999999999999999999999998753 3677889999999999999977 5668999
Q ss_pred CCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 003236 662 NSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~La 740 (837)
|+.|++||.. ++.+..+. +...|.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|+
T Consensus 365 dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 365 DKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp TSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 9999999965 55666555 4677999999999999999999999999995 5677888899999999999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeC
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST 819 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~sp 819 (837)
+++ |+.|++||+.. ..+..+..|...|.+++|+|++++|++++.|+.|++||........+.+|...|++++|+|
T Consensus 443 ~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~ 518 (577)
T 2ymu_A 443 SASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 518 (577)
T ss_dssp EEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECT
T ss_pred EEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcC
Confidence 999 99999999643 5778888999999999999999999999999999999975544458889999999999999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 003236 820 VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 820 dg~~LaSgs~DG~I~IWd 837 (837)
++++||+++.||.|+|||
T Consensus 519 dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 519 DGQTIASASDDKTVKLWN 536 (577)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECcCEEEEEe
Confidence 999999999999999997
No 21
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.7e-36 Score=328.02 Aligned_cols=280 Identities=18% Similarity=0.246 Sum_probs=251.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE---EEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~---~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
..+|.+.|++++|+|++++|++++ ||.|++||+.++... ..+ ..|...|.+++|+|++++|++++.|+.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 348999999999999999999998 999999999875432 333 27999999999999999999999999999999
Q ss_pred cCCCCc-eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC
Q 003236 626 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 626 l~~~~~-~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d 703 (837)
+.+++. ....+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++..+++++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 998653 3566788999999999999876 566888999999999999998888874 6679999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+.|++||+++++.+..+. +...+.+++|+|++.+|++++ |+.|++||+++.. ...+..|...+.+++|+|++++
T Consensus 205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----EEEECCCSSCEEEEEECTTSSE
T ss_pred CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----eEEEcCCccceeEEEECCCCCE
Confidence 999999999998888775 788999999999999999998 9999999998863 3456778899999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++.|+.|++||+.+++.+....|...|.+++|+|++++|++++.||.|+|||
T Consensus 280 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 9999999999999999999887778999999999999999999999999999996
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-37 Score=348.19 Aligned_cols=268 Identities=24% Similarity=0.455 Sum_probs=245.5
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
.++++|+.|++|++|..... .....+.+|.+.|++++|+|++++|++|+.|++|+|||+.+
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~~-------------------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYETG-------------------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp SEEEEEESSSCEEEEETTTC-------------------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred CEEEEEeCCCeEEEEECCCC-------------------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 68999999999999976433 12456789999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
++++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++. ++..+.+|...|.++.|++++. ++++|+.|+.|+
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~ 259 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVR 259 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999866 4788899999999999999976 677999999999
Q ss_pred EEECCCCeeeeEEec-CCCeeEEEEecC--------------------CCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 003236 667 YWSINNGSCAGVFKC-QSGATQMRFQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKN 725 (837)
Q Consensus 667 vwDl~t~~~i~~~~~-~~~i~sl~~sp~--------------------g~~llags~dg~I~iwDl~s~~~~~~l~~h~~ 725 (837)
+||+.++++...+.. ...|.+++|+|+ +.++++++.|+.|++||++++.++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 999999998887754 567999999996 66899999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 726 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 726 ~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
.|++++|+|++.+|++++ |+.|+|||+.++ .++..+..|...|++++|+|++.+|++++.|+.|+||+++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999 999999999877 6778888999999999999999999999999999999863
No 23
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.2e-36 Score=326.26 Aligned_cols=287 Identities=19% Similarity=0.341 Sum_probs=246.9
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCC-----eEEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003236 544 TFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~-----~~~~~l~~h~~~I~~l~fspdg~~Latgs~ 617 (837)
.+....+|++|.+.|++|+|+|+ +++||||+.|++|+|||+.+. .+...+.+|...|.+++|+|++++|++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 44556689999999999999997 689999999999999998753 356788999999999999999999999999
Q ss_pred CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCC-
Q 003236 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRL- 694 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g- 694 (837)
|+.|++|+..... .......+...+..+.+++++. ++++++.|+.+++||+.......... +...+.+++|++++
T Consensus 107 d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 184 (340)
T 4aow_A 107 DGTLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS 184 (340)
T ss_dssp TSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred cccceEEeecccc-eeeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence 9999999999755 3666677888899999999876 55689999999999998765443322 35678899998764
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 695 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 695 -~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
..+++++.|+.|++||+++++.+..+.+|...|++++|+|++++|++++ |+.|++||+++. ..+..+.. ...+.
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 260 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIIN 260 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEE
Confidence 5678889999999999999999999999999999999999999999999 999999999987 66666654 46799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE----------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~----------~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+++|+|++. +++++.|+.|++||++++..+ ....|...|++++|+|++++||+|+.||.|+|||
T Consensus 261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 999999876 667778999999999987655 2346889999999999999999999999999997
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-37 Score=341.35 Aligned_cols=311 Identities=13% Similarity=0.177 Sum_probs=266.7
Q ss_pred CC-eEEcccCCCceEEeec----CCCCCCCCccccccccCCCeeeeEEEE----------ecCCCCCeEEEEEcCCCCEE
Q 003236 506 DR-FVDDGSLDDNVESFLS----PDDADPRDRVGRSAEVGKGFTFTEFQL----------IPASTSKVESCHFSPDGKLL 570 (837)
Q Consensus 506 ~~-~v~~Gs~D~~v~~w~s----~~~~~~~~~~~~~~~~~~g~~~~~~~~----------l~~H~~~V~sl~fSpdg~~L 570 (837)
.. ++++|+.|+.|++|.. ...... ..+..... ..+|.+.|++++|+|++++|
T Consensus 57 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 57 DESILAYGEKNSVARLARIVETDQEGKKY-------------WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp CTTEEEEEETBTEEEEEEEEEC------C-------------EEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred CCcEEEEecCCceEEEEEEecccCCcccc-------------ccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 35 8999999999999976 332100 01111122 22378899999999999999
Q ss_pred EEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccc--------
Q 003236 571 ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-------- 642 (837)
Q Consensus 571 asgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~-------- 642 (837)
++|+.||.|+||| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++. .+..+..+...
T Consensus 124 ~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-VMQHFELKETGGSSINAEN 201 (425)
T ss_dssp EEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-EEEEECCC-----------
T ss_pred EEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EEEEeeccccCccceeecc
Confidence 9999999999999 6778888999999999999999999999999999999999998765 46666666666
Q ss_pred -------eEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC
Q 003236 643 -------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQ 714 (837)
Q Consensus 643 -------V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~ 714 (837)
+.+++|++++ .+++++.++.|++||+.+++.+..+. +...+.+++|+|++.+|++++.|+.|++||++++
T Consensus 202 ~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 202 HSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp ----CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred ccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 9999999874 46688889999999999988887775 4567999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 715 VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 715 ~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
+.+..+..|...|.+++|+|++ +|++++ |+.|++||++++ ..+..+..|...+.+++|+|++.+|++++.|+.|+
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence 9899999999999999999999 888887 999999999887 78888888999999999999999999999999999
Q ss_pred EEECCCCc--------------------EE-EeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 794 LWNMTENK--------------------TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 794 IwDl~s~~--------------------~~-~l~~h~~--~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+||+.+++ .+ .+..|.. .|++++|+|++++|++++.||.|+|||
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence 99998877 55 6778866 999999999999999999999999996
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-38 Score=351.86 Aligned_cols=311 Identities=16% Similarity=0.227 Sum_probs=267.5
Q ss_pred CeEEcc----------cCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003236 507 RFVDDG----------SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (837)
Q Consensus 507 ~~v~~G----------s~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~D 576 (837)
.++++| +.|+.|++|........ ..+.. ..|...|++++|+|++++|++|+.|
T Consensus 26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------------KPIAS-LQVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------------SCSCC-CCCSSCEEEEEECSSSSCEEEEESS
T ss_pred CEEEEEecCcccccccCCCCeEEEEEccCCCCC----------------cEEEE-EecCCceEEEEECCCCCeEEEEccC
Confidence 377777 88889999966443110 11112 2588899999999999999999999
Q ss_pred CcEEEEeCCC----CeEEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCC------ce--eEEeeccccce
Q 003236 577 KKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD------YS--LRTFTGHSTTV 643 (837)
Q Consensus 577 g~I~VWd~~t----~~~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~------~~--~~~~~~h~~~V 643 (837)
|.|+|||+.+ .+.+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+.. .. ...+..|...|
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 9999999987 4588889999999999999998 8999999999999999999865 22 22346799999
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-------CCCeeEEEEecCC-CEEEEEEcCC---eEEEEECC
Q 003236 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRL-GRILAAAIEN---YISILDVE 712 (837)
Q Consensus 644 ~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~~~i~sl~~sp~g-~~llags~dg---~I~iwDl~ 712 (837)
.+++|+|++..++++++.|+.|++||+++++.+..+.. ...+.+++|+|++ ..+++++.++ .|++||++
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 99999999777888999999999999999999888876 4679999999997 5888888888 99999999
Q ss_pred CC-eEEEEEc-CCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEE
Q 003236 713 TQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIG 787 (837)
Q Consensus 713 s~-~~~~~l~-~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs 787 (837)
++ .++..+. +|...|.+++|+| ++.+|++++ |+.|++||++++ ..+..+..|...|.+++|+|++ .+|++++
T Consensus 249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~ 325 (416)
T 2pm9_A 249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACAS 325 (416)
T ss_dssp STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence 86 6677777 8999999999999 899999998 999999999987 7788888999999999999999 8999999
Q ss_pred cCCeEEEEECCCCcEE-Ee-----------------------------------ccCCCCeeEEEEeCCCCEEEEEECCC
Q 003236 788 CYETLELWNMTENKTL-TL-----------------------------------SAHDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 788 ~dg~I~IwDl~s~~~~-~l-----------------------------------~~h~~~V~sla~spdg~~LaSgs~DG 831 (837)
.|+.|++||+.+.... .. ..|...+.+++|+|+|++|++++.||
T Consensus 326 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~ 405 (416)
T 2pm9_A 326 FDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK 405 (416)
T ss_dssp SSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred cCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC
Confidence 9999999999876532 10 01667888999999999999999999
Q ss_pred cEEEeC
Q 003236 832 CVKIWK 837 (837)
Q Consensus 832 ~I~IWd 837 (837)
.|+|||
T Consensus 406 ~v~~w~ 411 (416)
T 2pm9_A 406 GVSITN 411 (416)
T ss_dssp CBCCBC
T ss_pred eEEEEE
Confidence 999997
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1e-36 Score=339.22 Aligned_cols=287 Identities=14% Similarity=0.152 Sum_probs=255.4
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe------EEEEeccCCCCeEEEEEcCC----C---CE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SR 611 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~------~~~~l~~h~~~I~~l~fspd----g---~~ 611 (837)
......+.+|.+.|++|+|+| ++|++|+.||.|+|||+.+++ .+..+..|...|++++|+|+ + .+
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 345677889999999999998 799999999999999999887 67888899999999999999 9 99
Q ss_pred EEEEeCCCeEEEEEcCCCCc----eeEEeecc-----ccceEEEEEc----CCCCeEEEEEeCCCcEEEEECCC------
Q 003236 612 LATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------ 672 (837)
Q Consensus 612 Latgs~Dg~I~IWDl~~~~~----~~~~~~~h-----~~~V~sl~fs----pdg~~llasgs~Dg~I~vwDl~t------ 672 (837)
|++++.|+.|++||+.++.. .+..+..| ...|.+++|+ |++..+|++++.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999987653 15677778 5899999999 98875377899999999999998
Q ss_pred Ceeee-----EEe--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---C---CCCEEEEEEc
Q 003236 673 GSCAG-----VFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWN 733 (837)
Q Consensus 673 ~~~i~-----~~~--------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~---h---~~~V~sl~~s 733 (837)
++.+. .+. +...+.+++|+|++ .+++++.|+.|++||+++++.+..+.. | ...|.+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 66665 554 36779999999999 999999999999999999999999998 9 9999999999
Q ss_pred CCCCEEEEEe-C---CeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 734 TSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 734 pdg~~Lasgs-D---g~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
|++.+|++++ | +.|++||++++ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999998 8 89999999987 67777877 899999999999999999999999999999
Q ss_pred CCCCcEE-Eec------cC---------------CCCeeEEEEeCCC----------CEEEEEECCCcEEEeC
Q 003236 797 MTENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK 837 (837)
Q Consensus 797 l~s~~~~-~l~------~h---------------~~~V~sla~spdg----------~~LaSgs~DG~I~IWd 837 (837)
+.+++.+ .+. .| ...|++++|+|++ .+|++++.||.|+|||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9999877 555 67 9999999999998 7999999999999996
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.5e-36 Score=322.61 Aligned_cols=275 Identities=19% Similarity=0.299 Sum_probs=242.8
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
.+...++++|+.|+.|++|..... ..+..+..|...|.+++|+|++++|++|+.|++|+||
T Consensus 22 sp~~~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 22 HPTEPWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEcCCCcEEEEECCCC-------------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 334478999999999999965432 2456788999999999999999999999999999999
Q ss_pred eCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 583 d~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
|+.+++.+..+.+|.+.|.+++|+|++.+|++|+.|++|++||+.++......+.+|...|.+++|+|.+..+|++|+.|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999987666778899999999999999766788899999
Q ss_pred CcEEEEECCCCeeeeEEec--CCCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 663 SEIRYWSINNGSCAGVFKC--QSGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp--~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
+.|++||++.+.....+.. ...+..+.|+| ++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 9999999988776666543 35688899987 6779999999999999999999999999999999999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCC
Q 003236 739 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTE 799 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~-L~sgs~dg~I~IwDl~s 799 (837)
|++++ |+.|+|||+.++ +++..+..+...+.+++|+|++.. +++++.++.+.+|++.+
T Consensus 243 l~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp EEEEETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred EEEEcCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 99999 999999999987 788888888999999999998853 34555566688888765
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=335.26 Aligned_cols=244 Identities=17% Similarity=0.283 Sum_probs=211.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~----~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
.|...|.+++|+||+ .|++|+.||+|+|||+.+++.+. .+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 466789999999986 78899999999999999876543 3458999999999999999999999999999999998
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCC-CEEEEEEcCC
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAIEN 704 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g-~~llags~dg 704 (837)
++ .+..+.+|...|.+++|++++..+|++|+.|+.|++||++++++...+.. ...+.+++|+|++ .++++++.|+
T Consensus 159 ~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QV-VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TE-EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred Cc-EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 65 58889999999999999999988999999999999999999998877653 3458899999954 5678889999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
.|++||+++++++..+.+|...|++++|+|++ .+|++++ |+.|+|||+.++ + +..+.+|...|.+++|+|++..
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNHS 313 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSSTT
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCCe
Confidence 99999999999999999999999999999998 5788888 999999999876 3 3456789999999999999875
Q ss_pred -EEEEEcCCeEEEEECCCCcE
Q 003236 783 -LLVIGCYETLELWNMTENKT 802 (837)
Q Consensus 783 -L~sgs~dg~I~IwDl~s~~~ 802 (837)
|++++.|++|++|++.+...
T Consensus 314 llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEEETTSCEEEEECCC---
T ss_pred EEEEEcCCCeEEEEECCCCCC
Confidence 56888999999999987543
No 29
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.2e-36 Score=331.44 Aligned_cols=282 Identities=15% Similarity=0.191 Sum_probs=247.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
+..|.++|++++|+|++++||+|+.|+.|+|||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45699999999999999999999999999999999987 8888999999999999999999999999999999999987
Q ss_pred CCce-eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eeEEe--cCCCeeEEEEecCCCEEEEEEc
Q 003236 629 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK--CQSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 629 ~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~---i~~~~--~~~~i~sl~~sp~g~~llags~ 702 (837)
++.. ...+..|...|.+++|+|++. ++++++.|+.|++||++.+.. ...+. +...+.+++|+|++.++++++.
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 6532 334467899999999999976 666888999999999988763 22322 3567999999999999999999
Q ss_pred CCeEEEEEC------------------CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003236 703 ENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 703 dg~I~iwDl------------------~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 763 (837)
|+.|++||+ ..+..+..+..|...|.+++|+|++.+|++++ |+.|++||++++ .++..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~ 239 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT 239 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence 999999995 46788889989999999999999999999999 999999999987 67888
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC--CcE---------------------------------------
Q 003236 764 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT--------------------------------------- 802 (837)
Q Consensus 764 ~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s--~~~--------------------------------------- 802 (837)
+..+...|.+++|+|++.+|+++ .|+.|++||+.+ ++.
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 318 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence 88899999999999999877766 999999999987 431
Q ss_pred EEe-ccCCCCeeEEEEe-CCC---CEEEEEECCCcEEEeC
Q 003236 803 LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK 837 (837)
Q Consensus 803 ~~l-~~h~~~V~sla~s-pdg---~~LaSgs~DG~I~IWd 837 (837)
..+ .+|...|++++|+ +++ .+|++|+.||.|+|||
T Consensus 319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 222 3899999999976 666 8999999999999996
No 30
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-35 Score=357.02 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=244.6
Q ss_pred eEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCC-----CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC
Q 003236 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg 619 (837)
.....+++|.+.|+||+|++++ ++|++|+.|++|+|||+.+ +.....+.+|...|.+++|+|++++|++|+.|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 3456789999999999999864 7999999999999999875 345678899999999999999999999999999
Q ss_pred eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe----cCCCeeEEEEecCC-
Q 003236 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQMRFQPRL- 694 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----~~~~i~sl~~sp~g- 694 (837)
+|+|||+.++. .+..+.+|...|.+++|+|++. +|++|+.|++|++||+.......... +...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 530 (694)
T 3dm0_A 453 ELRLWDLAAGV-STRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL 530 (694)
T ss_dssp EEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred cEEEEECCCCc-ceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence 99999999865 4788899999999999999977 55699999999999987554333322 34569999999986
Q ss_pred -CEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 695 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 695 -~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
..+++++.|+.|++||++++++...+.+|...|++++|+|++.+|++++ |+.|+|||++++ .++..+.. ...+.
T Consensus 531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVIH 606 (694)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCEE
T ss_pred cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcEE
Confidence 5799999999999999999999999999999999999999999999999 999999999987 56666554 56799
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-eccC-------------------CCCeeEEEEeCCCCEEEEEECCCc
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l~~h-------------------~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
+++|+|++.+|+++ .++.|+|||+.+++.+. +..+ ...+++++|+|++++|++|+.||.
T Consensus 607 ~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 607 ALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 99999998866655 56679999999988762 2211 123789999999999999999999
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|+|||
T Consensus 686 i~iW~ 690 (694)
T 3dm0_A 686 IRVWG 690 (694)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6e-36 Score=336.08 Aligned_cols=312 Identities=15% Similarity=0.230 Sum_probs=259.4
Q ss_pred ccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003236 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (837)
Q Consensus 501 ~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (837)
.+.+...++++|+.|+.+++|........ ..+..| ..+....|++++++||+|+.||.|+
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-------------------~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDGS-------------------KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIK 122 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEETT-------------------TTSCSC-CEEEEEEECSSSCEEEEEETTSCEE
T ss_pred eeeecCCeEEEEEcCCcEEEEEeccccee-------------------eEEecC-CceEEEEEecCCCEEEEEECCCCEE
Confidence 34555678899999999999965433111 112234 3355557899999999999999999
Q ss_pred EEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 581 VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
|||+.+++....+..|...|++++|+|++++|++++.|+.|++||+.+++. +..+.+|...|.+++|+|++. +|++++
T Consensus 123 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~~ 200 (420)
T 3vl1_A 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGR-NVLSAS 200 (420)
T ss_dssp EECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTT-EEEEEE
T ss_pred EEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCC-EEEEEc
Confidence 999999999999899999999999999999999999999999999998764 678889999999999999976 566999
Q ss_pred CCCcEEEEECCCCeeeeEEec----CCCee---------------------EEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 661 NNSEIRYWSINNGSCAGVFKC----QSGAT---------------------QMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~~----~~~i~---------------------sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
.|+.|++||+++++++..+.. ...+. +++|+|++.++++++.|+.|++||+++++
T Consensus 201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999999999999888863 23344 44557888999999999999999999988
Q ss_pred EEEEEc-CCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcCCe
Q 003236 716 CRLKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYET 791 (837)
Q Consensus 716 ~~~~l~-~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~dg~ 791 (837)
.+..+. .|...|.+++|+|++. +|++++ |+.|++||++++. ..+..+.. +...+.++.+ +++.+|++++.|+.
T Consensus 281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYF-AAGALFVSSGFDTS 357 (420)
T ss_dssp EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEE
T ss_pred eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEEEe-CCCCEEEEecCCcc
Confidence 777765 4888999999999998 999988 9999999999874 23455555 5667777755 57789999999999
Q ss_pred EEEEECCCC----------cEEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 003236 792 LELWNMTEN----------KTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 837 (837)
Q Consensus 792 I~IwDl~s~----------~~~~l~~h~~~V~sla~spdg~---~LaSgs~DG~I~IWd 837 (837)
|++||+... ....+..|...|.+++|+|++. .|++++.+|.+.+|+
T Consensus 358 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 358 IKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred EEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 999998763 2335678899999999999999 788888999999995
No 32
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-35 Score=312.06 Aligned_cols=280 Identities=15% Similarity=0.232 Sum_probs=249.0
Q ss_pred eeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
.+.....+.+|.+.|++++| +++++|++|+.||.|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 34567889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC--ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEec-CCCEEEE
Q 003236 624 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQP-RLGRILA 699 (837)
Q Consensus 624 WDl~~~~--~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp-~g~~lla 699 (837)
|++.... ..+..+.+|...|.+++|. + .++++++.|+.|++|| .++.+..+. +...+.++.|.+ ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 9987653 3467788899999999994 3 3777999999999999 566666665 467799999988 8999999
Q ss_pred EEcCCeEEEEECCCCeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEe
Q 003236 700 AAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH 777 (837)
Q Consensus 700 gs~dg~I~iwDl~s~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fs 777 (837)
++.|+.|++|| .......+.. |...|.+++|+|++. +++++ |+.|++||++++ ..+..+..|...|.+++|+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence 99999999999 4566777777 899999999999999 66666 999999999987 6788888999999999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 778 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 778 pdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. +++++.||.|+|||
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 5999999999999999999877 6778999999999999998 56789999999996
No 33
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=9.6e-35 Score=316.75 Aligned_cols=275 Identities=17% Similarity=0.270 Sum_probs=240.5
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|++|++|...... ......+..+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus 30 ~~~l~s~s~D~~v~~W~~~~~~--------------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~ 95 (319)
T 3frx_A 30 PNLLLSASRDKTLISWKLTGDD--------------QKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA 95 (319)
T ss_dssp TTEEEEEETTSEEEEEEEEEET--------------TEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccEEEEecCCccEEEecCCCCC--------------ccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 3789999999999999653221 11224567889999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCC-----CeEEEEEe
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCD 660 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg-----~~llasgs 660 (837)
+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.. ..+..+.+|...|.++.|.|.. ..++++++
T Consensus 96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~ 173 (319)
T 3frx_A 96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173 (319)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence 9999999999999999999999999999999999999999974 3577888999999999999863 34788999
Q ss_pred CCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEE
Q 003236 661 NNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 739 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~L 739 (837)
.|+.|++||+++.+....+. +...|.+++|+|++.+|++++.|+.|++||+++++++..+.. ...|.+++|+|++.+|
T Consensus 174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l 252 (319)
T 3frx_A 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWL 252 (319)
T ss_dssp TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEE
T ss_pred CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEE
Confidence 99999999999998887765 456799999999999999999999999999999999988875 4689999999999999
Q ss_pred EEEeCCeEEEEEcCCCCCceeEEEee--------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 740 ASVSDELVRVWSIGSGSKGECIHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 740 asgsDg~I~IwDl~s~~~~~~i~~~~--------~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
+++.++.|++|++... ..+..+. .+...+.+++|+|+|++|++++.|+.|+|||+.++
T Consensus 253 a~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 253 AAATATGIKVFSLDPQ---YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTEEEEEEETTE---EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEcCCCcEEEEeCcC---eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999888999999875 4444432 24567899999999999999999999999998654
No 34
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.9e-35 Score=320.63 Aligned_cols=266 Identities=23% Similarity=0.367 Sum_probs=237.6
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|+.|++|..... ..+..+..|...|.+++|+|++++|++|+.|+.|++|++.
T Consensus 67 ~~~l~s~s~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~ 127 (340)
T 1got_B 67 SRLLLSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp SSEEEEEETTTEEEEEETTTC-------------------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEECCCC-------------------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence 368999999999999965432 2356678899999999999999999999999999999998
Q ss_pred CC----eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 586 SF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 586 t~----~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
+. .....+.+|.+.|.++.|++++. |++++.|++|++||+.++. .+..+.+|...|.+++|+|++. ++++|+.
T Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~ 204 (340)
T 1got_B 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTR-LFVSGAC 204 (340)
T ss_dssp TCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred cCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCCC-EEEEEeC
Confidence 64 46677889999999999998764 8999999999999999865 4788899999999999999876 6779999
Q ss_pred CCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEcCCCCE
Q 003236 662 NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEY 738 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~--h~~~V~sl~~spdg~~ 738 (837)
|+.|++||++++.++..+.. ...|.+++|+|++.+|++++.|+.|++||++++..+..+.. +...|++++|+|++.+
T Consensus 205 d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE
Confidence 99999999999998888864 56799999999999999999999999999999988777753 3357999999999999
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 739 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
|++++ |+.|+|||+.++ ..+..+.+|...|.+++|+|++.+|++++.|+.|+|||
T Consensus 285 l~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999 999999999887 67788899999999999999999999999999999997
No 35
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.8e-36 Score=328.42 Aligned_cols=286 Identities=15% Similarity=0.280 Sum_probs=245.8
Q ss_pred EEecCCCCCeEEEEEcCC----CCEEEEEECCCcEEEEeCCCCeEEEEecc-----CCCCeEEEEEcCC----CCEEEEE
Q 003236 549 QLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATS 615 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-----h~~~I~~l~fspd----g~~Latg 615 (837)
....+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+|+ +.+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 344589999999999984 44666666778999999998777666543 5678999999998 6799999
Q ss_pred eCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE----ecCCCeeEEEEe
Q 003236 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KCQSGATQMRFQ 691 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~----~~~~~i~sl~~s 691 (837)
+.||.|++||+.+++ .+..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+ .+...|.+++|+
T Consensus 92 ~~dg~i~v~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPITMQ-CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTTTCC-EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEchhce-EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 999999999999866 477888999999999999944557889999999999999999998887 356789999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCCCeEEEEE----------------------------cCCCCCEEEEEEcCCCCEEEEEe
Q 003236 692 PRLGRILAAAIENYISILDVETQVCRLKL----------------------------QGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 692 p~g~~llags~dg~I~iwDl~s~~~~~~l----------------------------~~h~~~V~sl~~spdg~~Lasgs 743 (837)
|++.+|++++.|+.|++||+++++....+ ..|...|.+++|+ +.+|++++
T Consensus 171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 248 (366)
T 3k26_A 171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS 248 (366)
T ss_dssp TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence 99999999999999999999976543322 3399999999998 77899888
Q ss_pred -CCeEEEEEcCCCCC-----------ceeEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEECCCCcE-----EE
Q 003236 744 -DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LT 804 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~-----------~~~i~~~~~~~~~I~sv~fspd--g~~L~sgs~dg~I~IwDl~s~~~-----~~ 804 (837)
|+.|++||+.+... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+++. ..
T Consensus 249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987532 1347778888999999999999 99999999999999999998752 25
Q ss_pred eccC--CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 805 LSAH--DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 805 l~~h--~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..| ...|++++|+|++++|++++.||.|+|||
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 6666 79999999999999999999999999997
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.5e-35 Score=327.75 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=237.4
Q ss_pred eeEEEEecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEec--cCCCCeEEEEEcC-CCCEEEEEeCCCe
Q 003236 545 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADRT 620 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~--~h~~~I~~l~fsp-dg~~Latgs~Dg~ 620 (837)
+..+..+.+|.+.|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++.+|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45567889999999999999999 999999999999999999887776665 6999999999999 7899999999999
Q ss_pred EEEEEcCCCCceeEEeec---cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCC-
Q 003236 621 VRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLG- 695 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~---h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~- 695 (837)
|++||+.+. .+..+.. |...|.+++|+|++. +|++++.|+.|++||++ ++.+..+. +...|.+++|+|++.
T Consensus 143 i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 143 TTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp EEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred EEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCC
Confidence 999999963 3445544 448899999999977 66799999999999995 56666665 567899999999998
Q ss_pred EEEEEEcCCeEEEEECCC----CeEEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCceeEEEee----
Q 003236 696 RILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS---- 765 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s----~~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~---- 765 (837)
.+++++.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++ |+.|+|||++++.....+....
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 899999999999999997 6677666 5999999999999 999999999 9999999999875433322111
Q ss_pred cCC----------CceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eecc--CCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 766 CTG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 766 ~~~----------~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~--h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
.+. ..+..++|+|++.+ +++.|+.|+|||+.+++.+ .+.. |...+.+++|+|++++|++|+ ||.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 111 33445666666665 6678999999999999887 5544 567888889999999999997 999
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|+|||
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=322.07 Aligned_cols=287 Identities=15% Similarity=0.199 Sum_probs=241.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEE-EEEEC---CCcEEEEeCCCCeEEEEe-ccCCCCeEEEEEcCC---CCEEEEEeCCCe
Q 003236 549 QLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADRT 620 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~L-asgs~---Dg~I~VWd~~t~~~~~~l-~~h~~~I~~l~fspd---g~~Latgs~Dg~ 620 (837)
..+.+|.+.|++++|+|++..| ++|+. |+.|+|||+.+++..... ..|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4557899999999999999655 56665 899999999988776443 379999999999998 699999999999
Q ss_pred EEEEEcCCCCceeEEeeccccceEEEEE------cCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEec-----CCCeeEE
Q 003236 621 VRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKC-----QSGATQM 688 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~h~~~V~sl~f------spdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~~-----~~~i~sl 688 (837)
|++||+.++...+..+.+|...|.+++| +|++. +|++++.|+.|++||+++++ .+..+.. ...+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999877568888999999999965 56665 66799999999999999887 5666653 2268888
Q ss_pred E----EecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcC---CCCEEEEEe-CCeEEEEEcCCCCCcee
Q 003236 689 R----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGEC 760 (837)
Q Consensus 689 ~----~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp---dg~~Lasgs-Dg~I~IwDl~s~~~~~~ 760 (837)
. |++++..+++++.|+.|++||+++++.... ..|...|.+++|+| ++.+|++++ |+.|++||++++.....
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 8 678999999999999999999999987555 45889999999999 899999998 99999999987643222
Q ss_pred E--EEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc--------------------EEEeccCCCCeeEEEE
Q 003236 761 I--HELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENK--------------------TLTLSAHDKLVSSLAA 817 (837)
Q Consensus 761 i--~~~~~~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s~~--------------------~~~l~~h~~~V~sla~ 817 (837)
+ ..+..|...|.+++|+|++. +|++++.|+.|++||+..+. ...+..|...|++++|
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~ 329 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDW 329 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEE
Confidence 2 24458899999999999998 89999999999999987532 2267789999999999
Q ss_pred eCCCCEEE-EEECCCcEEEeC
Q 003236 818 STVNGMVA-SASHDKCVKIWK 837 (837)
Q Consensus 818 spdg~~La-Sgs~DG~I~IWd 837 (837)
+|++++|+ +++.||.|+|||
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEE
T ss_pred cCCCCeEEEEecCCCcEEEEE
Confidence 99999888 899999999996
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-35 Score=326.64 Aligned_cols=278 Identities=17% Similarity=0.251 Sum_probs=245.7
Q ss_pred cCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeC----CCCe------EEEEecc----------CCCCeEEEEEcCCCC
Q 003236 552 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE----------HTQWITDVRFSPSLS 610 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~----~t~~------~~~~l~~----------h~~~I~~l~fspdg~ 610 (837)
..|.+.|++++|+|+++ +||+|+.||.|+|||+ .+++ ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45678999999999999 9999999999999999 8877 4555544 688999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC------
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG------ 684 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~------ 684 (837)
+|++++.||.|++||.. + ..+..+..|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+.....
T Consensus 122 ~l~~~~~dg~i~i~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 122 SIVTGVENGELRLWNKT-G-ALLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp EEEEEETTSCEEEEETT-S-CEEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred EEEEEeCCCeEEEEeCC-C-CeeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 99999999999999933 3 35788889999999999999977 566888899999999999998888775433
Q ss_pred ----------eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003236 685 ----------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG 753 (837)
Q Consensus 685 ----------i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~ 753 (837)
+.++.|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp -------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 889999987 6689999999999999999998889999999999999999999999999 9999999998
Q ss_pred CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 754 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 754 s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
++ ..+..+..|...|.+++|+|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.||.
T Consensus 278 ~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 278 NG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp SB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred CC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 87 5667777889999999999999 9999999999999999999877 66789999999999999999999999999
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|+|||
T Consensus 354 i~i~~ 358 (425)
T 1r5m_A 354 VNVYD 358 (425)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 39
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-36 Score=334.16 Aligned_cols=285 Identities=15% Similarity=0.193 Sum_probs=230.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
.+..|.++|++++|+|++++||+|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++++|++++.|++|+|||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557789999999999999999999999999999988 7788899999999999999999999999999999999999
Q ss_pred CCC--ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---eeeEEe--cCCCeeEEEEecCCCEEEEE
Q 003236 628 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK--CQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 628 ~~~--~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---~i~~~~--~~~~i~sl~~sp~g~~llag 700 (837)
++. .....+.+|...|.+++|+|++. +|++++.|+.|++||+++++ +...+. +...|.+++|+|++.+|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 865 23567778999999999999876 56688899999999999877 355555 46789999999999999999
Q ss_pred EcCCeEEEEECC------------------CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-ee
Q 003236 701 AIENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-EC 760 (837)
Q Consensus 701 s~dg~I~iwDl~------------------s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~-~~ 760 (837)
+.|+.|++||++ .++++..+ +|...|.+++|+|++++|++++ |+.|+|||+.++... ..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566667 8999999999999999999998 999999999987431 12
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc---------------------------------------
Q 003236 761 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------------------------------------- 801 (837)
Q Consensus 761 i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--------------------------------------- 801 (837)
+..+..|...|.+++|+|++.+|++++.++.+ +|+.....
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS 322 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence 67788899999999999999988777655555 77664211
Q ss_pred EE--------------EeccCCCCeeEEEEeCCC-C---EEEEEECCCcEEEeC
Q 003236 802 TL--------------TLSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK 837 (837)
Q Consensus 802 ~~--------------~l~~h~~~V~sla~spdg-~---~LaSgs~DG~I~IWd 837 (837)
.+ ....|...|+++++.+.. . .|+||+.||.|+|||
T Consensus 323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 00 001299999999976543 3 699999999999997
No 40
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.6e-34 Score=315.04 Aligned_cols=279 Identities=15% Similarity=0.231 Sum_probs=231.3
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|++|++|........ +........+.+|...|++++|+|++.+|++|+.|++|+|||+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~------------~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQN------------GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCS------------SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcc------------cccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 4578999999999999976543211 1122346678999999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe---eccccceEEEEEcCCCC--------
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE-------- 653 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~---~~h~~~V~sl~fspdg~-------- 653 (837)
.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+... . .... .+|...|.+++|+|++.
T Consensus 106 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (343)
T 2xzm_R 106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183 (343)
T ss_dssp TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSS
T ss_pred CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-c-eeeeecccCCCceeeeeeeccccccccccCCC
Confidence 999999999999999999999999999999999999999999842 2 2222 37889999999999863
Q ss_pred -eEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEE
Q 003236 654 -DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSV 730 (837)
Q Consensus 654 -~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s-~~~~~~l~~h~~~V~sl 730 (837)
.++++++.|+.|++||.. ......+. +...|.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.++
T Consensus 184 ~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v 261 (343)
T 2xzm_R 184 APYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQI 261 (343)
T ss_dssp CCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEE
T ss_pred CCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEE
Confidence 478899999999999954 55555554 467899999999999999999999999999954 33444443 55679999
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 731 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 731 ~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-----------~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
+|+|++.+++++.|+.|++||+.+..... +..+. +|...+.+++|+|++.+|++++.|+.|++|++.+
T Consensus 262 ~~sp~~~~la~~~d~~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 262 AFNPKLQWVAVGTDQGVKIFNLMTQSKAP-VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp EECSSSCEEEEEESSCEEEEESSSCCSCS-EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCCCc-eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 99999999988889999999998764322 22222 5677899999999999999999999999999865
Q ss_pred C
Q 003236 800 N 800 (837)
Q Consensus 800 ~ 800 (837)
+
T Consensus 341 g 341 (343)
T 2xzm_R 341 S 341 (343)
T ss_dssp E
T ss_pred c
Confidence 4
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.9e-35 Score=326.57 Aligned_cols=244 Identities=14% Similarity=0.260 Sum_probs=207.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE----EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~----~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
..+|...|++++|+|++. +++++.||+|+|||+.+++... ...+|...|++++|+|++++|++++.|++|+|||+
T Consensus 90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 447889999999999985 4567889999999998876543 34579999999999999999999999999999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCC-CEEEEEEc
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRL-GRILAAAI 702 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g-~~llags~ 702 (837)
.++. .+..+.+|...|.+++|++++..++++++.|+.|++||+++++++..+.. ...+.+++|+|++ .+|++++.
T Consensus 169 ~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 169 SQKA-VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp TTTE-EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred CCCc-EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence 9865 57888999999999999999888888999999999999999887766543 4568999999975 56778899
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-C
Q 003236 703 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-T 779 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp-d 779 (837)
|+.|++||+++++++..+.+|...|++++|+|++ .+|++++ |+.|+|||++++ +++.. ..|...|++++|+| +
T Consensus 248 d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP~d 323 (357)
T 4g56_B 248 TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSPLD 323 (357)
T ss_dssp SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECSSS
T ss_pred ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeCCC
Confidence 9999999999999999999999999999999987 5788888 999999999887 55544 47899999999998 7
Q ss_pred CCEEEEEEcCCeEEEEECCCC
Q 003236 780 FPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 780 g~~L~sgs~dg~I~IwDl~s~ 800 (837)
+.+|++++.|++|++||+.+.
T Consensus 324 ~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 324 HSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TTEEEEEETTSCEEEEECC--
T ss_pred CCEEEEEcCCCeEEEEECCCC
Confidence 899999999999999998654
No 42
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-35 Score=331.38 Aligned_cols=285 Identities=14% Similarity=0.240 Sum_probs=237.1
Q ss_pred eEEEEe-cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCC---Ce---EEEEeccCCCCeEEEEEcCCCCEEEEEeC
Q 003236 546 TEFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 546 ~~~~~l-~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t---~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~ 617 (837)
..+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +. ....+ .|...|++++|+|++.+|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 345667 89999999999999 999999999999999999876 33 23333 59999999999999999999999
Q ss_pred CCeEEEEEcC---CCCceeEEeec------------cccceEEEE--EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe
Q 003236 618 DRTVRVWDTE---NPDYSLRTFTG------------HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (837)
Q Consensus 618 Dg~I~IWDl~---~~~~~~~~~~~------------h~~~V~sl~--fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~ 680 (837)
||+|++||+. ++. ....+.. +...+.++. +++++ .++++++.|+.|++||+++++++..+.
T Consensus 132 dg~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 132 DGQIIVLKVNHYQQES-EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp TSEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEEeccccCCc-eeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 9999999995 333 2222222 445566666 44564 477799999999999999999998887
Q ss_pred c---CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcC----CCCEEEEEe-CCeEEEEE
Q 003236 681 C---QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWS 751 (837)
Q Consensus 681 ~---~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~sp----dg~~Lasgs-Dg~I~IwD 751 (837)
. ...|.+++|+|++.+|++++.|+.|++||+++++++..+. .|...|.+++|+| ++.+|++++ |+.|+|||
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 4 5789999999999999999999999999999999999886 7888999996664 677999998 99999999
Q ss_pred cCCCCCceeEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E
Q 003236 752 IGSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T 804 (837)
Q Consensus 752 l~s~~~~~~i~~~~~--------------------------~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~ 804 (837)
++++ .++..+.. |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .
T Consensus 290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 290 FVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp TTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred cCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 9987 55555443 44568889999 7789999999999999999887754 2
Q ss_pred ecc-------------------------------------CCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 003236 805 LSA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK 837 (837)
Q Consensus 805 l~~-------------------------------------h~~~V~sla~spd--g~~LaSgs~DG~I~IWd 837 (837)
+.+ |...|++++|+++ +.+|++|+.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 322 8999999999998 77999999999999996
No 43
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=311.70 Aligned_cols=282 Identities=21% Similarity=0.346 Sum_probs=231.6
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.|++|..... ..........+|...|++++|+|++++||+|+.|++|+|||+
T Consensus 27 ~g~~las~~~D~~i~iw~~~~~----------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 27 AGTLLASCGGDRRIRIWGTEGD----------------SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp TSSCEEEEETTSCEEEEEEETT----------------EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEEcCCC----------------cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 3478999999999999954322 111122334789999999999999999999999999999998
Q ss_pred CCC--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 585 ESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 585 ~t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
... +++..+.+|...|.+++|+|++++|++|+.|++|++||+.+... .+..+.+|...|.+++|+|++. +|++++
T Consensus 91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s 169 (345)
T 3fm0_A 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASAS 169 (345)
T ss_dssp CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEE
T ss_pred cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEe
Confidence 766 46788999999999999999999999999999999999987542 3567889999999999999976 666999
Q ss_pred CCCcEEEEECCCCeee--eEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC---------------CeEEEEEcC
Q 003236 661 NNSEIRYWSINNGSCA--GVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG 722 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i--~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s---------------~~~~~~l~~ 722 (837)
.|+.|++||++++... ..+. +...|.+++|+|++.+|++++.|+.|++||... ..++..+.+
T Consensus 170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T 3fm0_A 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS
T ss_pred CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC
Confidence 9999999999887643 3443 456799999999999999999999999999632 244556665
Q ss_pred -CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc------eeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEE
Q 003236 723 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLE 793 (837)
Q Consensus 723 -h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~------~~i~~~~~~~~~I~sv~fspdg~-~L~sgs~dg~I~ 793 (837)
|...|.+++|++++.+|++++ |+.|++|+....... ...+....|...|.+++|+|++. +|++++.|+.|+
T Consensus 250 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~ 329 (345)
T 3fm0_A 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA 329 (345)
T ss_dssp SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEE
Confidence 889999999999999999998 999999998764321 11223457889999999999984 899999999999
Q ss_pred EEECCCCcEE
Q 003236 794 LWNMTENKTL 803 (837)
Q Consensus 794 IwDl~s~~~~ 803 (837)
+|++.+++..
T Consensus 330 ~W~~~~~~~~ 339 (345)
T 3fm0_A 330 FWKYQRPEGL 339 (345)
T ss_dssp EEEECC----
T ss_pred EEEecCCCCc
Confidence 9999887754
No 44
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.7e-34 Score=315.60 Aligned_cols=267 Identities=22% Similarity=0.353 Sum_probs=236.7
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
.++++|+.|++|++|..... .....+..|...|.+++|+|+|.+||+|+.|+.|++|++..
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTT-------------------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp SEEEEEETTSEEEEEETTTC-------------------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCC-------------------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence 68999999999999965322 23455678889999999999999999999999999999864
Q ss_pred C------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCC-CeEEEEE
Q 003236 587 F------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSC 659 (837)
Q Consensus 587 ~------~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg-~~llasg 659 (837)
. .....+..|...|.+++|+|++..|++++.|++|++||+.+++ .+..+.+|...|.+++|+|+. ..+|++|
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sg 216 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETGNTFVSG 216 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence 3 2345667899999999999999999999999999999999876 478889999999999999863 3578899
Q ss_pred eCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC--CCCEEEEEEcCCC
Q 003236 660 DNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSG 736 (837)
Q Consensus 660 s~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h--~~~V~sl~~spdg 736 (837)
+.||.|++||+++++++..+.. ...|.+++|+|++..|++++.|+.|++||++....+..+..+ ...+.+++|+|++
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g 296 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC
Confidence 9999999999999999888864 567999999999999999999999999999998887777643 3578999999999
Q ss_pred CEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 737 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 737 ~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
.+|++++ |+.|+|||+.++ ..+..+..|...|.+++|+|++.+|++++.|+.|+||+
T Consensus 297 ~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 297 RLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999 999999999887 67788889999999999999999999999999999996
No 45
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.5e-33 Score=317.81 Aligned_cols=300 Identities=17% Similarity=0.263 Sum_probs=259.2
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
+.++++|+.|+.|++|..... ..+..+.+|.+.|++++|++++ +|++|+.||+|++||+.
T Consensus 132 ~~~l~sgs~dg~i~vwd~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 132 DNYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp TTEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCC-------------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 368999999999999965432 3466788999999999999988 99999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEEcCCCCce----------------------eEEeecccc
Q 003236 586 SFTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHST 641 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fs--pdg~~Latgs~Dg~I~IWDl~~~~~~----------------------~~~~~~h~~ 641 (837)
+++.+..+.+|...|.+++|+ +++.+|++++.|++|++||+.+.... +..+.+|..
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 999999999999999999998 57889999999999999999875432 456778989
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
.|.++..+ +. ++++++.|+.|++||+++++++..+.. ...+.+++|+|++..+++++.|+.|++||+++++++..+
T Consensus 272 ~v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 272 SVRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp CEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEEEEcCC--CC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 99888644 34 677999999999999999999988874 567999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
.+|...|.+++|+ +.+|++++ |+.|++||+.+.. ..... .+...+..++|++++.+|++++ |+.|++||+.+
T Consensus 349 ~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 349 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp CCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC---EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred eCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc---eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 9999999999997 57888888 9999999999863 33333 3566788889999999888888 89999999999
Q ss_pred CcEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 800 NKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 800 ~~~~~--l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
++.+. +..|...|.+++|+ +..++++++.||.+.+|
T Consensus 422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 99884 56889999999998 44566666778876655
No 46
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=331.07 Aligned_cols=279 Identities=20% Similarity=0.307 Sum_probs=245.1
Q ss_pred CCeEEEEEcCCCC-EEEEE----------ECCCcEEEEeCCCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 003236 556 SKVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (837)
Q Consensus 556 ~~V~sl~fSpdg~-~Lasg----------s~Dg~I~VWd~~t~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I 621 (837)
..|.+++|+|+++ +||+| +.|+.|+|||+.++. .+..+ .|...|.+++|+|++.+|++++.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 3588999999987 99999 889999999998875 33444 588999999999999999999999999
Q ss_pred EEEEcCC---CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe------eeeEE----ecCCCeeEE
Q 003236 622 RVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVF----KCQSGATQM 688 (837)
Q Consensus 622 ~IWDl~~---~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~------~i~~~----~~~~~i~sl 688 (837)
++||+.+ +...+..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++ ....+ .+...+.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999987 3346788889999999999999966678899999999999999876 33322 345789999
Q ss_pred EEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcCC------CCCEEEEEEcCCC-CEEEEEe-CC---eEEEEEcCCCC
Q 003236 689 RFQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGS 756 (837)
Q Consensus 689 ~~sp~-g~~llags~dg~I~iwDl~s~~~~~~l~~h------~~~V~sl~~spdg-~~Lasgs-Dg---~I~IwDl~s~~ 756 (837)
+|+|+ +..+++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++ |+ .|++||++++.
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99999 788999999999999999999999988876 7899999999997 6888888 77 99999999863
Q ss_pred CceeEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCc
Q 003236 757 KGECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKC 832 (837)
Q Consensus 757 ~~~~i~~~~-~~~~~I~sv~fsp-dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg-~~LaSgs~DG~ 832 (837)
..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.
T Consensus 252 --~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 --TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp --SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred --CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 3455566 7889999999999 9999999999999999999999877 677999999999999999 89999999999
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|+|||
T Consensus 330 i~iw~ 334 (416)
T 2pm9_A 330 IEVQT 334 (416)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=345.09 Aligned_cols=315 Identities=9% Similarity=0.036 Sum_probs=233.8
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC------CCEEEEEECCCc
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKK 578 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd------g~~Lasgs~Dg~ 578 (837)
...++++++.|++|++|....... ......++.+|.+.|.+|+|+|+ +.+||+|+.||+
T Consensus 172 ~~~~laS~s~D~tI~iWd~~~~~~---------------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt 236 (524)
T 2j04_B 172 HLEMFDKEKHSSCIQIFKMNTSTL---------------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT 236 (524)
T ss_dssp ----------CEEEEEEEEETTTC---------------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSC
T ss_pred hhhhhccCCCCceEEEEEccCCCC---------------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCe
Confidence 345678899999999996533210 11123456788999999999997 579999999999
Q ss_pred EEEEeCCCCeE-----------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEE-
Q 003236 579 AVLWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL- 646 (837)
Q Consensus 579 I~VWd~~t~~~-----------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl- 646 (837)
|+|||+.++.. ...+.+|...|++++|+++ ..|++|+.||+|++||+.++..+...+.+|...|.+|
T Consensus 237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS 315 (524)
T ss_dssp EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence 99999976532 2467889999999999986 4899999999999999997766667788999999999
Q ss_pred -EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC---CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC
Q 003236 647 -DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 647 -~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~---~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~ 722 (837)
+|++++..+|++|+.|++|++||+++++++..+..+ ..+.+++|+|++..+++++.|+.|++||++++.++..+.+
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec
Confidence 567776468899999999999999988877666532 2478999999999999999999999999999988888889
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 723 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 723 h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~--~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
|.+.|++|+|+|++.+|++|+ |++|+|||+..... ...... ..+...+.+++|+|++..+. ...+..+..|+...
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~~~~~~~~~~g 473 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL-HGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSSYEVYPLTVND 473 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT-TCC------CCCCEEEECBCCSSSCEEE-ECCCCCCCC-----
T ss_pred CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc-cccccCccceeeeEEEEeccCCCCCeEE-ccCCceecccccCC
Confidence 999999999999999999999 99999999865311 110000 01122577899999998442 22222232233233
Q ss_pred CcEEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 003236 800 NKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~spdg~---~LaSgs~DG~I~IWd 837 (837)
.....+.+|...|.+|+|+|++. .||+|+.||.|+||+
T Consensus 474 ~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 474 VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp --------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 34447889999999999999964 999999999999995
No 48
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-33 Score=304.46 Aligned_cols=270 Identities=24% Similarity=0.410 Sum_probs=239.1
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.+++|...+. .....+.+|...|.+++|+|++++|++|+.|+.|+|||+
T Consensus 34 ~~~~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 34 NGEWLASSSADKLIKIWGAYDG-------------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEeeCCCeEEEEeCCCc-------------------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 3468999999999999965432 234567899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.+++ .+..+..|...|.+++|+|++. ++++++.|+.
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~ 172 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGL 172 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCc
Confidence 9999999999999999999999999999999999999999999866 4778889999999999999976 6678999999
Q ss_pred EEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEE---EEEcCCCCEE
Q 003236 665 IRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS---VCWNTSGEYL 739 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~s---l~~spdg~~L 739 (837)
|++||+++++.+..+.. ...+.+++|+|++.++++++.|+.|++||+++++++..+.+|...+.+ ....+++.+|
T Consensus 173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence 99999999988877643 456899999999999999999999999999999999999988765433 2334678899
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEECC
Q 003236 740 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT 798 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs--~dg~I~IwDl~ 798 (837)
++++ |+.|++||+.++ ..+..+..|...|.+++|+|++..|++++ .|+.|++|+.+
T Consensus 253 ~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EECCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9988 999999999887 67888999999999999999999999987 58999999864
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.8e-34 Score=308.77 Aligned_cols=278 Identities=17% Similarity=0.245 Sum_probs=243.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-- 631 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-- 631 (837)
|.++|.+++|+|||++++++..++.+.+|+............|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456799999999999999998888887877665555555557999999999999999999998 99999999987543
Q ss_pred eeEEee--ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 632 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 632 ~~~~~~--~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~--~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
.+..+. .|...|.+++|+|++. ++++++.|+.|++||+.+++ ....+. +...+.+++|+|++..+++++.|+.|
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 223333 7899999999999976 56688889999999999887 344444 35679999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++ ..+..+. +...+.+++|+|++.+|++
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeec-CCCceEEEEECCCCCEEEE
Confidence 9999999999999999999999999999999999998 999999999887 5555543 6778999999999999999
Q ss_pred EEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 786 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 786 gs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus 242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 9999999999999999889999999999999999999999999999999996
No 50
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=349.89 Aligned_cols=191 Identities=13% Similarity=0.138 Sum_probs=162.6
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.|++|..... ... ....|...|.+++|+| |++|++++.|++|+|||+
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~~-------------------~~~-~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~ 86 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQV-------------------EVV-IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSL 86 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTTC-------------------EEE-EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEeCCCc-------------------EEE-EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEEC
Confidence 3478999999999999954211 111 2235788999999999 889999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee----------EEeeccccceEEEEEcCCCCe
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~----------~~~~~h~~~V~sl~fspdg~~ 654 (837)
.+++++..+. |.+.|++++|+|++++|++|+.||+|++||+.+..... ..+.+|...|.+++|+|++..
T Consensus 87 ~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 87 YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence 9999988885 77899999999999999999999999999999765321 234678899999999998767
Q ss_pred EEEEEeCCCcEEEEECCCCeeeeEEecC-------------------CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 655 LLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t~~~i~~~~~~-------------------~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
++++|+.|+.| +||+++++++..+..+ ..|.+++|+|++.+|++++.|+.|++||+++++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 88899999999 9999999988887654 569999999999999999999999999998766
Q ss_pred EEE
Q 003236 716 CRL 718 (837)
Q Consensus 716 ~~~ 718 (837)
++.
T Consensus 245 ~~~ 247 (902)
T 2oaj_A 245 MIM 247 (902)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 51
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.6e-33 Score=317.66 Aligned_cols=296 Identities=20% Similarity=0.362 Sum_probs=262.1
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
+.++++|+.|+.|++|..... ..+..+.+|.+.|++++|+ +.+|++|+.||+|++||+.
T Consensus 129 g~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEECCCcEEEEECCCC-------------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 468899999999999965432 2456778999999999998 5699999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
+++.+..+.+|...|.+++|+ +.+|++++.||+|++||+.+++ .+..+.+|...|.+++| ++. ++++++.||.|
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i 261 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMV 261 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSS-CEEEEETTSCE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEE
Confidence 999999999999999999995 5689999999999999999866 47788899999999999 334 67789999999
Q ss_pred EEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 666 RYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
++||+++++++..+.. ...+.++.| ++.++++++.|+.|++||+++++++..+.+|...+.++.++ +.+|++++
T Consensus 262 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 337 (445)
T 2ovr_B 262 KVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA 337 (445)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred EEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC
Confidence 9999999999888874 567888888 78899999999999999999999999999999999998875 66888888
Q ss_pred CCeEEEEEcCCCCCceeEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Ee-----ccCCCCeeE
Q 003236 744 DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSS 814 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~---~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l-----~~h~~~V~s 814 (837)
|+.|++||++++ .++..+.. |...|.+++|+ +.+|++++.|+.|++||+.+++.+ .+ ..|.+.|++
T Consensus 338 dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 338 DSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412 (445)
T ss_dssp TSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred CCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence 999999999887 56666665 78889999996 579999999999999999999887 33 378899999
Q ss_pred EEEeCCCCEEEEEECCCc----EEEeC
Q 003236 815 LAASTVNGMVASASHDKC----VKIWK 837 (837)
Q Consensus 815 la~spdg~~LaSgs~DG~----I~IWd 837 (837)
++|+|++.+|++|+.||+ |.|||
T Consensus 413 ~~~s~~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 413 IRASNTKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp EEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred EEecCCEEEEEEcccCCCCccEEEEEE
Confidence 999999999999999998 99996
No 52
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-33 Score=315.22 Aligned_cols=293 Identities=21% Similarity=0.339 Sum_probs=232.6
Q ss_pred ccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003236 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (837)
Q Consensus 501 ~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (837)
.+.+...++++|+ ++.+++|...++................ ..........+...|++++|+|||++||+|+.|++|+
T Consensus 71 ~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~ 148 (393)
T 1erj_A 71 KFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP-ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 148 (393)
T ss_dssp EECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEETTSCEE
T ss_pred EECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccc-ccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEE
Confidence 3344557888887 6889999765432110000000000000 0000111223445699999999999999999999999
Q ss_pred EEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 581 VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++.. ...+. +...|.+++|+|....++++|+
T Consensus 149 iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~~~s 226 (393)
T 1erj_A 149 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIAAGS 226 (393)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEEEEE
T ss_pred EEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCCEEEEEc
Confidence 999999999999999999999999999999999999999999999998653 33443 6678999999995456788999
Q ss_pred CCCcEEEEECCCCeeeeEEe--------cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------------eEEEEE
Q 003236 661 NNSEIRYWSINNGSCAGVFK--------CQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCRLKL 720 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~--------~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~------------~~~~~l 720 (837)
.|+.|++||++++..+..+. +...|.+++|+|++.+|++++.|+.|++||+++. .+...+
T Consensus 227 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 306 (393)
T 1erj_A 227 LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306 (393)
T ss_dssp TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE
Confidence 99999999999998877662 3567999999999999999999999999999753 456677
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC------CCCEEEEEEcCCeEE
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP------TFPSLLVIGCYETLE 793 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp------dg~~L~sgs~dg~I~ 793 (837)
.+|...|.+++|++++.+|++++ |+.|++||+.++ .++..+.+|...|.+++|++ ++.+|++++.|++|+
T Consensus 307 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~ 383 (393)
T 1erj_A 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383 (393)
T ss_dssp ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEE
Confidence 88999999999999999999999 999999999987 67888899999999999986 678999999999999
Q ss_pred EEECCCC
Q 003236 794 LWNMTEN 800 (837)
Q Consensus 794 IwDl~s~ 800 (837)
||++...
T Consensus 384 iW~~~~~ 390 (393)
T 1erj_A 384 IWKYKKI 390 (393)
T ss_dssp EEEEEEC
T ss_pred ECccccc
Confidence 9997543
No 53
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.3e-33 Score=342.59 Aligned_cols=310 Identities=20% Similarity=0.295 Sum_probs=271.4
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.|++|..... ..+..+.+|.+.|++++|+|++++|++|+.||.|+|||+
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEECCCC-------------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 3478899999999999965332 245677899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
.+++.+..+.+|.+.|++++|+|++.+|++++.||.|++||+.++......+.+|...|.+++|+|++..++++++.||.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 164 (814)
T 3mkq_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (814)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence 99999999999999999999999999999999999999999998766778889999999999999954567889999999
Q ss_pred EEEEECCCCeeeeEEecC--CCeeEEEEec--CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 003236 665 IRYWSINNGSCAGVFKCQ--SGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~--~~i~sl~~sp--~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~La 740 (837)
|++||+.++.....+... ..+.+++|+| ++..+++++.|+.|++||++++..+..+.+|...|.+++|+|++.+|+
T Consensus 165 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 999999988877776643 6799999999 999999999999999999999999999999999999999999999999
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEECCCCc----------EE-----
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK----------TL----- 803 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~-L~sgs~dg~I~IwDl~s~~----------~~----- 803 (837)
+++ ||.|++||+.++ ..+..+..+...+.+++|+|++.. +++++.++.+.+|++.... .+
T Consensus 245 ~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 321 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGK 321 (814)
T ss_dssp EEETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCT
T ss_pred EEeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcc
Confidence 999 999999999887 678888888999999999999874 3666667788889875432 11
Q ss_pred -----------------------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 804 -----------------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 804 -----------------------------~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+..+...+.+++|+|+|++|++++ ||.+.||+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 322 NAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp TSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred cccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence 1123445688999999999999988 88999985
No 54
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.7e-34 Score=364.83 Aligned_cols=313 Identities=21% Similarity=0.374 Sum_probs=272.2
Q ss_pred cCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 003236 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 504 ~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd 583 (837)
+...++++|+.|+.|++|..... ..+..+.+|.+.|++++|+|++++||+|+.|+.|+|||
T Consensus 625 ~~~~~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 625 QDGQRIASCGADKTLQVFKAETG-------------------EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCC-------------------CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 34478999999999999966433 24667889999999999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 584 TESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 584 ~~t~~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.++. .+..+.+|...|.+++|+|++. ++++++.
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~ 763 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDE-LLASCSA 763 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTT-EEEEEES
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCC-EEEEEEC
Confidence 999999999999999999999999 56689999999999999999876 4778889999999999999977 6668999
Q ss_pred CCcEEEEECCCCeeeeEEe--------------------------------------------------------cCCCe
Q 003236 662 NSEIRYWSINNGSCAGVFK--------------------------------------------------------CQSGA 685 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~--------------------------------------------------------~~~~i 685 (837)
||.|++||+.++.....+. +...+
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v 843 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence 9999999998776544332 23457
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc------
Q 003236 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------ 758 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~------ 758 (837)
.+++|+|++..+++++.++.|++||+.++..+..+.+|...|++++|+|++.+|++++ |+.|++||+.+....
T Consensus 844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence 8899999999999999999999999999999999999999999999999999999999 999999997531100
Q ss_pred --------------------eeEE--------EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCC
Q 003236 759 --------------------ECIH--------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD 809 (837)
Q Consensus 759 --------------------~~i~--------~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~ 809 (837)
..+. ........+.+++|+|++.++++++.+|.|++||+.+++.+ .+.+|.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence 0000 01123467899999999999999999999999999998877 667899
Q ss_pred CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 810 KLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 810 ~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..|++++|+|++++|++++.||.|++||
T Consensus 1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp SCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 9999999999999999999999999996
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.2e-33 Score=319.05 Aligned_cols=280 Identities=18% Similarity=0.302 Sum_probs=246.4
Q ss_pred eEEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 003236 546 TEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (837)
Q Consensus 546 ~~~~~l~~H~~~V-~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IW 624 (837)
.....+.+|.+.| .|+.| ++++|++|+.||+|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++|
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 3456788999885 66666 56799999999999999999999999999999999999999987 99999999999999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEEEECCCCeeee-----------------------EEe
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCAG-----------------------VFK 680 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~~~i~-----------------------~~~ 680 (837)
|+.++. .+..+.+|...|.+++|++. +..++++++.|+.|++||+.++.... .+.
T Consensus 189 d~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ETTTTE-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECCCCc-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 999865 57888899999999999952 34678899999999999998876432 121
Q ss_pred -cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003236 681 -CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 681 -~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
+...+.+ +++++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++++
T Consensus 268 ~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--- 342 (464)
T 3v7d_B 268 GHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG--- 342 (464)
T ss_dssp CCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---
T ss_pred CccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Confidence 1233444 477889999999999999999999999999999999999999999999999999 999999999987
Q ss_pred eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 759 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 759 ~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.++..+..|...|.+++|+ +.+|++++.|+.|++||+.++.......|...+..++|++++.+|++++ ||.|+|||
T Consensus 343 ~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd 418 (464)
T 3v7d_B 343 ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN 418 (464)
T ss_dssp EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence 7888999999999999998 4789999999999999999988776667888899999999999999998 89999996
No 56
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.3e-33 Score=329.96 Aligned_cols=302 Identities=18% Similarity=0.234 Sum_probs=251.5
Q ss_pred eEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCC---CeEEEEEcCC-CCEEEEEECCCcEEEEe
Q 003236 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPD-GKLLATGGHDKKAVLWC 583 (837)
Q Consensus 508 ~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~---~V~sl~fSpd-g~~Lasgs~Dg~I~VWd 583 (837)
++++|+.|+.+++|.... ...+..+.+|.. .|++++|+|+ +++|++++.|+.|++||
T Consensus 175 ~l~~~~~d~~v~vwd~~~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPP-------------------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp EEEEEETTTEEEEEETTT-------------------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred EEEEEeCCCcEEEEeCCC-------------------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 788999999999996322 234667889999 9999999999 99999999999999999
Q ss_pred CCCCeEEEEe-c---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce---------------------------
Q 003236 584 TESFTVKSTL-E---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--------------------------- 632 (837)
Q Consensus 584 ~~t~~~~~~l-~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~--------------------------- 632 (837)
+.+++.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+.+++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 314 (615)
T 1pgu_A 236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 314 (615)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEE
Confidence 9999999998 6 899999999999 9999999999999999999864321
Q ss_pred -----------------eEEeeccccceEEEEEcCC---------------------------------CCeEEEEEeCC
Q 003236 633 -----------------LRTFTGHSTTVMSLDFHPS---------------------------------KEDLLCSCDNN 662 (837)
Q Consensus 633 -----------------~~~~~~h~~~V~sl~fspd---------------------------------g~~llasgs~D 662 (837)
+..+.+|...|.+++| |+ +. .+++++.|
T Consensus 315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d 392 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWD 392 (615)
T ss_dssp EETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETT
T ss_pred EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc-EEEEEeCC
Confidence 1222234444444444 32 23 34455566
Q ss_pred CcEEEEECC----------------------------------CCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEE
Q 003236 663 SEIRYWSIN----------------------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYIS 707 (837)
Q Consensus 663 g~I~vwDl~----------------------------------t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~ 707 (837)
+.|++||+. +++.+..+.+...+.+++|+ +.++++++. |+.|+
T Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i~ 470 (615)
T 1pgu_A 393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTIQ 470 (615)
T ss_dssp TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCEE
T ss_pred CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeEE
Confidence 666666554 34445555556778888888 789999999 99999
Q ss_pred EEECCCCeEE-EEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeC------
Q 003236 708 ILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHP------ 778 (837)
Q Consensus 708 iwDl~s~~~~-~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~fsp------ 778 (837)
+||+.++... ..+..|...|++++|+|++++|++++ |+.|++||+.++ +.+..+.. |...|.+++|+|
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~~ 547 (615)
T 1pgu_A 471 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGAN 547 (615)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC----
T ss_pred EEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCcccccc
Confidence 9999988665 66778999999999999999999998 999999999987 77777777 999999999999
Q ss_pred ----CCCEEEEEEcCCeEEEEECCCC-cEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 779 ----TFPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 779 ----dg~~L~sgs~dg~I~IwDl~s~-~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.+|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+|||
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence 9999999999999999999987 444 6779999999999999999 99999999999996
No 57
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.9e-34 Score=318.58 Aligned_cols=279 Identities=13% Similarity=0.100 Sum_probs=227.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCC-------cEEEEeCCCCe----------EEEEeccCCCCeEEEEEcCCCCEEEEE---
Q 003236 556 SKVESCHFSPDGKLLATGGHDK-------KAVLWCTESFT----------VKSTLEEHTQWITDVRFSPSLSRLATS--- 615 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg-------~I~VWd~~t~~----------~~~~l~~h~~~I~~l~fspdg~~Latg--- 615 (837)
-+|+|++|+||+++||+|+.|. +|+||++.... ....+..|...|.+++++ +..++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4799999999999999997643 59999986532 123567888999998875 4466665
Q ss_pred --------eCCCeEEEEEcCCCCceeEEe--------eccccceEEEEEcCCCCeEE-EEEeCCCcEEEEECCCCeeeeE
Q 003236 616 --------SADRTVRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV 678 (837)
Q Consensus 616 --------s~Dg~I~IWDl~~~~~~~~~~--------~~h~~~V~sl~fspdg~~ll-asgs~Dg~I~vwDl~t~~~i~~ 678 (837)
+.|+.|++|++......+... ..+...+.+++|+|||..++ ++++.|++|++||+.+++++..
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~ 172 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE 172 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence 457889999987655433222 23445689999999998764 4566799999999999999999
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-CC----eEEEEE
Q 003236 679 FKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS 751 (837)
Q Consensus 679 ~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-Dg----~I~IwD 751 (837)
+.+...|.+++|+|++.++++++ ++.+.+|+..++..+.. ...|...|.+++|+|++.++++++ |+ .+++|+
T Consensus 173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS 251 (365)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence 99989999999999999888877 55677777777665543 446888999999999999999988 65 688899
Q ss_pred cCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-E-eccCCCCeeEEEEeCCCCEEEEEE
Q 003236 752 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 752 l~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~-l~~h~~~V~sla~spdg~~LaSgs 828 (837)
+..... ......+..|...|++++|+|++++|++|+.|+.|+|||+.+++++ . +.+|...|++|+|+|||++||||+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S 331 (365)
T 4h5i_A 252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS 331 (365)
T ss_dssp EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence 876532 1234567788899999999999999999999999999999999987 4 368999999999999999999999
Q ss_pred CCCcEEEeC
Q 003236 829 HDKCVKIWK 837 (837)
Q Consensus 829 ~DG~I~IWd 837 (837)
.|++|+|||
T Consensus 332 ~D~tvrvw~ 340 (365)
T 4h5i_A 332 AANTIHIIK 340 (365)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999999996
No 58
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.2e-32 Score=298.90 Aligned_cols=278 Identities=15% Similarity=0.249 Sum_probs=242.5
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|++|++|...... .........+.+|...|++++|+|++++|++|+.|+.|++|+..
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~--------------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDE--------------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSS--------------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEECCCCC--------------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 3689999999999999765432 11223467789999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC-eEEEEEeCCCc
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSE 664 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~-~llasgs~Dg~ 664 (837)
..........+...+..+.+++++.+|++++.|+.+++||+...........+|...|.+++|++++. .++++++.|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~ 196 (340)
T 4aow_A 117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196 (340)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence 99999888889999999999999999999999999999999876665666788999999999998754 46778999999
Q ss_pred EEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 665 IRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
|++||+++++++..+.. ...|.+++|+|++.+|++++.|+.|++||+++.+.+..+.. ...|.+++|+|++.+++++.
T Consensus 197 i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~ 275 (340)
T 4aow_A 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT 275 (340)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEE
T ss_pred EEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccC
Confidence 99999999998888764 56799999999999999999999999999999999988874 46899999999999888878
Q ss_pred CCeEEEEEcCCCCCceeEEE---------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 744 DELVRVWSIGSGSKGECIHE---------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~---------~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
|+.|+|||+++. ..+.. ...|...|++++|+|++++|++++.|+.|+|||+.+|+
T Consensus 276 d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 276 GPSIKIWDLEGK---IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTEEEEEETTTT---EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCEEEEEECCCC---eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999999999876 33333 34577899999999999999999999999999998875
No 59
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.3e-33 Score=328.68 Aligned_cols=307 Identities=17% Similarity=0.281 Sum_probs=264.6
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCC-eEEEEEcC--CCCEEEEEECCCcE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKA 579 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~-V~sl~fSp--dg~~Lasgs~Dg~I 579 (837)
.+...++++++ ++.+.+|...+.. ........+.+|.+. |++++|+| ++++||+|+.||.|
T Consensus 27 spdg~~l~~~~-~~~v~v~~~~~~~---------------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v 90 (615)
T 1pgu_A 27 DPTTNAIAYPC-GKSAFVRCLDDGD---------------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV 90 (615)
T ss_dssp ETTTTEEEEEE-TTEEEEEECCSSC---------------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred CCCCCEEEEec-CCeEEEEECCCCC---------------CccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE
Confidence 33446777777 7889999654321 011346778899999 99999999 99999999999999
Q ss_pred EEEeCCCC--------eEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCCceeEEeeccccceEEEE
Q 003236 580 VLWCTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLD 647 (837)
Q Consensus 580 ~VWd~~t~--------~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~~~~~~~~~~~~h~~~V~sl~ 647 (837)
+|||+.++ +....+..|...|.+++|+|++++|++++.+ +.|++||.. + .+..+.+|...|.+++
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~--~-~~~~~~~~~~~v~~~~ 167 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--N-SLGEVSGHSQRINACH 167 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--C-EEEECCSCSSCEEEEE
T ss_pred EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC--C-cceeeecCCccEEEEE
Confidence 99999754 6778888899999999999999999999988 789999832 3 5788889999999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CC---CeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEE-c
Q 003236 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QS---GATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q 721 (837)
Q Consensus 648 fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~---~i~sl~~sp~-g~~llags~dg~I~iwDl~s~~~~~~l-~ 721 (837)
|+|++..++++++.|+.|++||+.+++++..+.. .. .|.+++|+|+ +.++++++.|+.|++||+++++.+..+ .
T Consensus 168 ~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 247 (615)
T 1pgu_A 168 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED 247 (615)
T ss_dssp ECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB
T ss_pred ECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc
Confidence 9999887888999999999999999999988875 44 6999999999 999999999999999999999999998 6
Q ss_pred ---CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 722 ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 722 ---~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~----~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
.|...|.+++|+ ++.+|++++ |+.|++||++++ ..+..+..+ ...+.++.|. ++.++++++.++.|+
T Consensus 248 ~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~ 322 (615)
T 1pgu_A 248 DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLN 322 (615)
T ss_dssp TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEE
T ss_pred cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEE
Confidence 899999999999 999999999 999999999987 667776665 3567888886 889999999999999
Q ss_pred EEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 794 LWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 794 IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+||+.+++.+ .+..|...|++++| |+ |++++.||.|++||
T Consensus 323 ~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 323 FYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWS 363 (615)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETT
T ss_pred EEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEE
Confidence 9999987776 67788888999988 77 77777888888875
No 60
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=306.82 Aligned_cols=273 Identities=23% Similarity=0.414 Sum_probs=216.8
Q ss_pred eEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEe-cC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 508 ~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l-~~-H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
++++|+.|+.|++|...... +..+..+ .+ |.+.|++++|+|++++||+|+.|++|+|||+.
T Consensus 26 ~las~~~D~~i~lw~~~~~~-----------------~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~ 88 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDD-----------------FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE 88 (330)
T ss_dssp EEEEEESSSCEEEEECSSSC-----------------CEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCC-----------------eEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence 89999999999999654321 1223344 34 99999999999999999999999999999984
Q ss_pred -------CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---ceeEEeeccccceEEEEEcCCCCeE
Q 003236 586 -------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 586 -------t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~---~~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
..+.+..+.+|...|.+++|+|++++|++|+.|++|+|||+.... ..+..+.+|...|.+++|+|++. +
T Consensus 89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~ 167 (330)
T 2hes_X 89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-L 167 (330)
T ss_dssp ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-E
T ss_pred cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-E
Confidence 345678889999999999999999999999999999999995322 34677889999999999999976 6
Q ss_pred EEEEeCCCcEEEEECCCC--eeeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--------eEEEEEcC
Q 003236 656 LCSCDNNSEIRYWSINNG--SCAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG 722 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t~--~~i~~~~-~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~--------~~~~~l~~ 722 (837)
|++++.|++|++||+.++ +++..+. +...|.+++|+|+ +..+++++.|+.|++||++.+ .+...+..
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 247 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD 247 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence 779999999999999876 5666665 4567999999998 678999999999999998754 44555555
Q ss_pred -CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC-ceEEEEEeC--CCCEEEEEEcCCeEEEEEC
Q 003236 723 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 723 -h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~-~I~sv~fsp--dg~~L~sgs~dg~I~IwDl 797 (837)
|...|.+++|++++ +|++++ |+.|+|||..++...........|.. .|.+++|+| ++.+|++++.|+.|+|||+
T Consensus 248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 89999999999766 666666 99999999876521112223356766 899999999 6889999999999999998
Q ss_pred CC
Q 003236 798 TE 799 (837)
Q Consensus 798 ~s 799 (837)
.+
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 64
No 61
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=309.33 Aligned_cols=288 Identities=17% Similarity=0.264 Sum_probs=243.6
Q ss_pred eeeEEEEecCCCCCeEEEEEcCC---CCEEEEEECCCcEEEEeCCC-CeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 003236 544 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD 618 (837)
Q Consensus 544 ~~~~~~~l~~H~~~V~sl~fSpd---g~~Lasgs~Dg~I~VWd~~t-~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~D 618 (837)
.+..+..+.+|.+.|+|++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 44567788999999999999999 69999999999999999986 5554 7888999999999999999999999999
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEE--cCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~f--spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
|.|++||+.++. ...+..|...|.+++| ++++. +|++++.|+.|++||+++++.+..+..+..+.++.+.+ ..
T Consensus 108 g~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 182 (368)
T 3mmy_A 108 KTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PM 182 (368)
T ss_dssp SEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TE
T ss_pred CcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--Ce
Confidence 999999999765 3446779999999999 77754 67799999999999999999999999888777777775 58
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCE----EEEEe-CCeEEEEEcCCCCCceeEEEeecCCC
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spdg~~----Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
+++++.++.+.+||++......... .+...+.++++.++... +++++ |+.|++||++.......+..+..|..
T Consensus 183 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 262 (368)
T 3mmy_A 183 AVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRS 262 (368)
T ss_dssp EEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEE
T ss_pred eEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeec
Confidence 8999999999999999865443332 24456677777665543 77777 99999999988754345556666654
Q ss_pred ------------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 770 ------------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 770 ------------~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..|...|++++|+|++.+|++|+.|+..+.|
T Consensus 263 ~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 263 NGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH 342 (368)
T ss_dssp C----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred ccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence 6999999999999999999999999999999887 677899999999999999999999998755443
No 62
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8e-34 Score=308.90 Aligned_cols=277 Identities=14% Similarity=0.143 Sum_probs=241.6
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe---EEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 623 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~I 623 (837)
+....+|.+.|++++|+|++++|++++.|+.|+|||+.++. ....+..|...|.+++|+|+++ +|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 44566899999999999999999999999999999998776 3445558999999999999999 9999999999999
Q ss_pred EEc-CCCCceeEEeec--cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC---------CeeeeEEecCCCeeEEEEe
Q 003236 624 WDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQ 691 (837)
Q Consensus 624 WDl-~~~~~~~~~~~~--h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---------~~~i~~~~~~~~i~sl~~s 691 (837)
||+ .++. ...+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++..+.+...+.+++|+
T Consensus 84 wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 84 VDLIGSPS--FQALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp ECSSSSSS--EEECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEeccCCc--eEeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence 999 7754 477788 999999999999 54 677999999999999988 7777777778889999999
Q ss_pred cCCCEEEEEEcCCeEEEEECCC-Ce--EEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCC---CceeEEE
Q 003236 692 PRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIHE 763 (837)
Q Consensus 692 p~g~~llags~dg~I~iwDl~s-~~--~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I~IwDl~s~~---~~~~i~~ 763 (837)
+++ +++++.++.|++||+++ +. .......|...|.+++|+| ++.+|++++ |+.|+||+++... ....+..
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred CCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence 886 99999999999999998 43 3445556889999999999 999999999 9999999998751 0134455
Q ss_pred eecCCC---------ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEECCCc
Q 003236 764 LSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 764 ~~~~~~---------~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h-~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
+..|.. .|.+++|+|++.+|++++.|+.|++||+.+++.+ .+..| ...|++++ |++.+|++|+.||.
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 666644 9999999999999999999999999999999877 66777 99999999 99999999999998
No 63
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.2e-35 Score=331.52 Aligned_cols=282 Identities=19% Similarity=0.278 Sum_probs=224.1
Q ss_pred EEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 003236 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW 624 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IW 624 (837)
....+|...|+||+|+| ++.+||+|+.||.|+|||+.+++ ....+.+|.+.|++|+|+| ++.+|++|+.||+|+||
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34567899999999999 56799999999999999998665 3455678999999999998 68999999999999999
Q ss_pred EcCCCCceeEEee---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC-EEEEE
Q 003236 625 DTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG-RILAA 700 (837)
Q Consensus 625 Dl~~~~~~~~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~-~llag 700 (837)
|+++.. ...+. .+...+.+++|+|++. +|++|+.||.|++||++.........+...|.+++|+|++. .++++
T Consensus 193 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 193 DFKGNI--LRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp ETTSCE--EEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred eccCCc--eeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEe
Confidence 998643 23322 2345678999999976 67799999999999997544333333467899999999876 57788
Q ss_pred EcCCeEEEEECCCCeEEE---EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC------c
Q 003236 701 AIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------K 770 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~---~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~------~ 770 (837)
+.|+.|++||+++.+... ...+|...|++++|+|++.+|++++ |+.|+|||+.++ .+...+..|.. .
T Consensus 270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~ 346 (435)
T 4e54_B 270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHLT 346 (435)
T ss_dssp ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSSC
T ss_pred cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEecccccccccce
Confidence 899999999998765332 3356999999999999999999999 999999999987 34444333321 2
Q ss_pred eEEEEEeCCCCEEEEEEc------------CCeEEEEECCCCcEE-Ee-ccCCCCeeEE-EEeCCCCEEEEEECCCcEEE
Q 003236 771 FHSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~------------dg~I~IwDl~s~~~~-~l-~~h~~~V~sl-a~spdg~~LaSgs~DG~I~I 835 (837)
+..+.|+|++..++++.. ++.|++||..+++.+ .+ .+|...|.++ +|+|+|.+|++|+ |+.|+|
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i 425 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI 425 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence 345567777777666643 247999999999887 33 4788889887 6999999999876 789999
Q ss_pred eC
Q 003236 836 WK 837 (837)
Q Consensus 836 Wd 837 (837)
||
T Consensus 426 W~ 427 (435)
T 4e54_B 426 WS 427 (435)
T ss_dssp CC
T ss_pred EE
Confidence 97
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.2e-34 Score=321.78 Aligned_cols=273 Identities=19% Similarity=0.349 Sum_probs=234.8
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|++|++|..... .....+..|...|.+++|+|+|++||+|+.|+.|+|||+.
T Consensus 78 ~~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~ 138 (380)
T 3iz6_a 78 KNWIVSASQDGRLIVWNALTS-------------------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138 (380)
T ss_dssp SSCEEEEETTSEEEEEETTTT-------------------EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred CCEEEEEeCCCeEEEEECCCC-------------------ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence 368899999999999965332 2456778999999999999999999999999999999986
Q ss_pred CCe-------EEEEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeEEe-----eccccceEEEEEcCCC
Q 003236 586 SFT-------VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSK 652 (837)
Q Consensus 586 t~~-------~~~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~~~~~~-----~~h~~~V~sl~fspdg 652 (837)
+.. ....+.+|.+.|.++.|.|+ +..|++|+.|++|++||+.++.. +..+ .+|...|.+++|++.+
T Consensus 139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSS
T ss_pred CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCC
Confidence 532 34567899999999999996 56799999999999999998764 4444 6799999999999866
Q ss_pred CeEEEEEeCCCcEEEEECC-CCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC-----
Q 003236 653 EDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN----- 725 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~-t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~----- 725 (837)
..+|++|+.|+.|++||++ .+.++..+. +...|.+++|+|++.+|++++.|+.|++||++++..+..+..+..
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 6788899999999999998 456666665 456799999999999999999999999999999998888765432
Q ss_pred --CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 726 --QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 726 --~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~----~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
.|++++|+|++.+|++++ |+.|+|||+..+ +.+..+ ..|...|.+++|+|++.+|++++.|+.|+||++.
T Consensus 298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SCSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred cCceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 489999999999999999 999999999877 455444 5788999999999999999999999999999987
Q ss_pred CCc
Q 003236 799 ENK 801 (837)
Q Consensus 799 s~~ 801 (837)
..+
T Consensus 375 ~~~ 377 (380)
T 3iz6_a 375 GHR 377 (380)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.9e-33 Score=303.08 Aligned_cols=250 Identities=19% Similarity=0.293 Sum_probs=212.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--CeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW 624 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t--~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IW 624 (837)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.+.|++++|+++ +.+|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 46789999999999999999999999999999999974 4677899999999999999863 8999999999999999
Q ss_pred EcCCCC-ceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCee--eeEE-ecCCCeeEEEEecC------
Q 003236 625 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVF-KCQSGATQMRFQPR------ 693 (837)
Q Consensus 625 Dl~~~~-~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~--i~~~-~~~~~i~sl~~sp~------ 693 (837)
|+.++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++.. ...+ .+...+.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998764 2456678899999999999972 34777999999999999987632 2223 34567999999997
Q ss_pred -------CCEEEEEEcCCeEEEEECCCCe----EEEEEcCCCCCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCc
Q 003236 694 -------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 694 -------g~~llags~dg~I~iwDl~s~~----~~~~l~~h~~~V~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
+..|++++.|+.|++||++++. ....+.+|...|.+++|+|++ .+|++++ |++|+|||+++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 4689999999999999998764 667888999999999999985 7899998 999999999875321
Q ss_pred eeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 759 ECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 759 ~~i~~~--~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
.....+ ..+...|.+++|+|++.+|++++.|+.|+||+..
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 222233 4567889999999999999999999999999976
No 66
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.2e-34 Score=321.02 Aligned_cols=278 Identities=18% Similarity=0.332 Sum_probs=231.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----------EEEEeccCC------------CCeEEEEEcCCC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL 609 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~~~~l~~h~------------~~I~~l~fspdg 609 (837)
.|.+.|++|+|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998876 577888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEEcCCCCce--------------------------------------e-EEeeccccceEEEEE
Q 003236 610 --SRLATSSADRTVRVWDTENPDYS--------------------------------------L-RTFTGHSTTVMSLDF 648 (837)
Q Consensus 610 --~~Latgs~Dg~I~IWDl~~~~~~--------------------------------------~-~~~~~h~~~V~sl~f 648 (837)
.+|++++.|++|++||+.+.... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998753321 1 123679999999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCC-CeeeeEE--------ecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCCCeE--
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF--------KCQSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-- 716 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t-~~~i~~~--------~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~~~-- 716 (837)
+|++. +|++| .|+.|++||+++ +.++..+ .+...|.+++|+|++ ..|++++.|+.|++||++++..
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99977 55577 699999999994 4454433 245679999999998 8999999999999999999876
Q ss_pred --EEEEcCCCC------------CEEEEEEcCCCCEEEEEeCCeEEEEEcCC-CCCceeEEEeecCCCc-----------
Q 003236 717 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK----------- 770 (837)
Q Consensus 717 --~~~l~~h~~------------~V~sl~~spdg~~LasgsDg~I~IwDl~s-~~~~~~i~~~~~~~~~----------- 770 (837)
+..+..|.. .|.+++|+|++.+|++++++.|+|||+++ + .++..+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ 340 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND 340 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence 778888876 89999999999999999899999999987 4 455555555421
Q ss_pred ----eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccC---------------------------------CCCee
Q 003236 771 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS 813 (837)
Q Consensus 771 ----I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h---------------------------------~~~V~ 813 (837)
+..++|+|++.+|++++.|+.|++||+.+++.+.+..| ...|.
T Consensus 341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 420 (447)
T 3dw8_B 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL 420 (447)
T ss_dssp GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence 33489999999999999999999999999988765443 35688
Q ss_pred EEEEeCCCCEEEEEECCCcEEEe
Q 003236 814 SLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 814 sla~spdg~~LaSgs~DG~I~IW 836 (837)
+++|+|++.+||+++.|+ ++||
T Consensus 421 ~~~~~p~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 421 HTAWHPKENIIAVATTNN-LYIF 442 (447)
T ss_dssp EEEECSSSSEEEEECSSC-EEEE
T ss_pred EEEECCCCCEEEEEecce-eeee
Confidence 999999999999998876 6666
No 67
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.8e-34 Score=305.89 Aligned_cols=285 Identities=18% Similarity=0.217 Sum_probs=218.8
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----eEEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVR 622 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~ 622 (837)
..+.+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|++++|+| ++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 346799999999999999999999999999999999876 56778889999999999999 699999999999999
Q ss_pred EEEcCCCC--------ceeEEeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeeEEe------------
Q 003236 623 VWDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK------------ 680 (837)
Q Consensus 623 IWDl~~~~--------~~~~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~~~~------------ 680 (837)
+||+.++. ..+..+..|...|.+++|+|+ +. ++++++.|+.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99998764 346778889999999999998 65 66688999999999999877554432
Q ss_pred --cCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCC----CEEEEEe-CCeEE
Q 003236 681 --CQSGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVR 748 (837)
Q Consensus 681 --~~~~i~sl~~sp~---g~~llags~dg~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg----~~Lasgs-Dg~I~ 748 (837)
+...+.++.|+|+ +..+++++.++.+.+|+...+.. +..+.+|...|++++|+|++ .+|++++ |+.|+
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 3456899999997 89999999999998888887754 77788899999999999998 7899988 99999
Q ss_pred EEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCE
Q 003236 749 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 823 (837)
Q Consensus 749 IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~----dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~ 823 (837)
+||++.+. ...........+....+.+....+..+.. ...+.+|+....+.+ .+.+|...|++++|+|++++
T Consensus 244 iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 244 IFKITEKL---SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred EEeCCCCc---CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 99998763 22222222233333344444433333332 335556655555555 67789999999999999999
Q ss_pred EEEEECCCcEEEeC
Q 003236 824 VASASHDKCVKIWK 837 (837)
Q Consensus 824 LaSgs~DG~I~IWd 837 (837)
|++|+.||.|+|||
T Consensus 321 l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 321 LSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEETTSCEEEEE
T ss_pred EEEecCCCcEEEEe
Confidence 99999999999996
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-33 Score=311.87 Aligned_cols=280 Identities=18% Similarity=0.335 Sum_probs=240.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
...+|...+.+.++++++..+++++.|+.|+|||+.+++....+.. |...|++++|+|++.+|++|+.||.|++||+.+
T Consensus 86 ~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp ECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 3446766654433333345678888999999999999998877765 889999999999999999999999999999998
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
++ .+..+.+|...|.+++|++ .++++++.||.|++||++ ....+..+. +...|.+++|+|++..|++++.|+.|
T Consensus 166 ~~-~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 166 QT-KLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp CC-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred Ce-EEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 66 4778889999999999953 478899999999999998 455555554 46789999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCC-CEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg-~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
++||++++..+..+..|...|.+++|+|++ .++++++ |+.|++||+.++ .++..+. +...+.+++|+|++.+
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~ 317 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPHSKE 317 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSSE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCCCCe
Confidence 999999999999999999999999999976 5666654 899999999987 5565554 5678999999999999
Q ss_pred EEEEE--cCCeEEEEECCCCcEE---EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs--~dg~I~IwDl~s~~~~---~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++ .|+.|++||+.+++.. .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus 318 l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 318 IMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred EEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99965 7999999999987655 4678999999999999999999999999999996
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.1e-33 Score=308.44 Aligned_cols=289 Identities=19% Similarity=0.360 Sum_probs=237.6
Q ss_pred EEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEe-------------ccCCCCeEEEEEcC-CCCE
Q 003236 547 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWITDVRFSP-SLSR 611 (837)
Q Consensus 547 ~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------------~~h~~~I~~l~fsp-dg~~ 611 (837)
....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.++.....+ .+|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3567789999999999999 9999999999999999999876554333 25999999999999 7889
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCC--eEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEE
Q 003236 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQM 688 (837)
Q Consensus 612 Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~--~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl 688 (837)
|++++.||.|++||+.++.. ...+. +...+.++.|++.+. .++++++.|+.|++||+++++.+..+. +...|.++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp EEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 99999999999999998653 44443 778899999998643 378899999999999999998888877 46679999
Q ss_pred EEecCCC-EEEEEEcCCeEEEEECCCCe-EEEEE---------------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEE
Q 003236 689 RFQPRLG-RILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVW 750 (837)
Q Consensus 689 ~~sp~g~-~llags~dg~I~iwDl~s~~-~~~~l---------------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~Iw 750 (837)
+|+|++. .+++++.|+.|++||++++. ++..+ ..|...|.+++|+|++.+|++++ |+.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 9999998 48899999999999998764 44444 46888999999999999999998 9999999
Q ss_pred EcCCCCCceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003236 751 SIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 751 Dl~s~~~~~~i~~~--~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg 827 (837)
|+.++......... ......+........+..+++++.++.|++||+.+++.+ .+.+|...|++++|+|++.+|+++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence 99987432111110 111122222233344566888889999999999999888 677899999999999999999999
Q ss_pred ECCCcEEEeC
Q 003236 828 SHDKCVKIWK 837 (837)
Q Consensus 828 s~DG~I~IWd 837 (837)
+.||.|+|||
T Consensus 353 ~~dg~i~iw~ 362 (408)
T 4a11_B 353 SRDCNILAWV 362 (408)
T ss_dssp ETTSCEEEEE
T ss_pred CCCCeEEEEe
Confidence 9999999996
No 70
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.8e-34 Score=320.51 Aligned_cols=274 Identities=16% Similarity=0.213 Sum_probs=234.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.+++++|+|++++|++|+.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|+|||+.++. ....+
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 135 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID 135 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence 3558999999999999999999999999987777666666 455666789999999999999999999998754 46677
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
.+|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+. +...|.+++|+|++..|++++.|+.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 89999999999999976 67799999999999999999888887 46779999999999999999999999999999999
Q ss_pred EEEEEcC---CCCCEEEEE---------------------EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCC
Q 003236 716 CRLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGN 769 (837)
Q Consensus 716 ~~~~l~~---h~~~V~sl~---------------------~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~ 769 (837)
.+..+.. |...|.+++ |+|++.+|++++ |+.|++||++++ ..+..+ ..|..
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~ 291 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC 291 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence 9988875 444555554 578899999998 999999999987 344443 45788
Q ss_pred ceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCcE-E-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 770 KFHSCVFHPTFP-SLLVIGCYETLELWNMTENKT-L-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 770 ~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s~~~-~-~l~~-h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|.+++|+|++. +|++++.|+.|++||+.+++. + .+.. |...|.++.| +++++|++++.||.|+|||
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 999999999999 999999999999999998754 2 5554 7778888865 5788999999999999996
No 71
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.3e-32 Score=309.26 Aligned_cols=270 Identities=22% Similarity=0.404 Sum_probs=233.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
++.|+||+++ +||+|. |++|+|||+.++++...+ .+|...|++|+|+|+|++|++|+.||+|+|||+.+++ .+..
T Consensus 108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~ 184 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 184 (420)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred ceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence 5679999764 888775 899999999999887665 4678899999999999999999999999999999865 4788
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
+.+|...|.++++++ .++++|+.|+.+++||..... .+..+. +...+..+.+++++..+++++.|+.|++||..+
T Consensus 185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~ 261 (420)
T 4gga_A 185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261 (420)
T ss_dssp ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence 999999999999874 478899999999999998644 344444 456799999999999999999999999999987
Q ss_pred Ce----EEEEEcCCCCCEEEEEEcCCCC-EEEEE--e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 714 QV----CRLKLQGHKNQVHSVCWNTSGE-YLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 714 ~~----~~~~l~~h~~~V~sl~~spdg~-~Lasg--s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
++ .+.....|...|.+++|+|++. +++++ + |+.|+|||+.++ .++..+.. ...+.++.|++++..+++
T Consensus 262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~ 337 (420)
T 4gga_A 262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS 337 (420)
T ss_dssp CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence 64 4566778999999999999754 55554 3 899999999988 66666654 467899999999999988
Q ss_pred EE--cCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 786 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 786 gs--~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|||.+||||+.||+|+|||
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 5889999999999888 7889999999999999999999999999999997
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.7e-33 Score=339.10 Aligned_cols=286 Identities=17% Similarity=0.308 Sum_probs=255.5
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
...+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+..|...|.+++|+|++++|++++.||.|+|||
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeeEEe-cCCCeeEEEEec-CCCEEEEEEc
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK-CQSGATQMRFQP-RLGRILAAAI 702 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~-~~~~i~sl~~sp-~g~~llags~ 702 (837)
+.+++ .+..+.+|...|.+++|+|++. ++++++.||.|++||+.++ .....+. +...+.+++|+| ++..+++++.
T Consensus 84 ~~~~~-~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGE-KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCc-EEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 99876 4778889999999999999987 5668999999999999987 5555555 456799999999 7889999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCC-CCEEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC
Q 003236 703 ENYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 778 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~h~-~~V~sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp 778 (837)
|+.|++||++++.....+..+. ..|.+++|+| ++.+|++++ |+.|++||+.++ .++..+..|...|.+++|+|
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcC
Confidence 9999999999887776666554 8999999999 999999999 999999999887 77888888999999999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCC--EEEEEECCCcEEEeC
Q 003236 779 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK 837 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~--~LaSgs~DG~I~IWd 837 (837)
++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. ++++++ |+.+.+|+
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 9999999999999999999998877 6778889999999999987 455555 55566663
No 73
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-32 Score=352.37 Aligned_cols=285 Identities=21% Similarity=0.356 Sum_probs=260.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
..+.+|.+.|++++|+|||++||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|++|+|||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I 706 (837)
++ .+..+.+|...|.+++|+|++ ..++++++.|+.|++||+.+++++..+.. ...|.+++|+|++..+++++.||.|
T Consensus 689 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 689 GK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp CC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred Cc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 76 478889999999999999963 45788999999999999999998887764 5679999999999999999999999
Q ss_pred EEEECCCCeEEEEEcC-------------CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceE
Q 003236 707 SILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFH 772 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~-------------h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~ 772 (837)
++||++++.....+.. +...|.+++|+|++.++++++++.|.+||+.++ ..+..+ ..|...+.
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCCC
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCceE
Confidence 9999999887766542 233788999999999999999999999999987 444444 37889999
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+++|+|++.++++++.++.|++||+.++..+ .+.+|...|++++|+|++.+|++++.||.|++||
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999999999999999877 7789999999999999999999999999999996
No 74
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.4e-32 Score=329.42 Aligned_cols=274 Identities=16% Similarity=0.270 Sum_probs=234.7
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..++++|+.|++|++|........ .......+.+|...|++++|+|++++|++|+.|++|+|||+.
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKA--------------YGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTC--------------SCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEEccCCCcc--------------cccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 368999999999999976543211 112346688999999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE---eeccccceEEEEEcCCCC-eEEEEEeC
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDN 661 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~---~~~h~~~V~sl~fspdg~-~llasgs~ 661 (837)
++..+..+.+|...|.+++|+|++++|++|+.|++|+|||+..... ... ..+|...|.+++|+|++. .++++++.
T Consensus 461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 9999999999999999999999999999999999999999875322 222 246889999999999863 47889999
Q ss_pred CCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEE
Q 003236 662 NSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 740 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~La 740 (837)
|+.|++||++++++...+.. ...|.+++|+|++.+|++++.|+.|++||+++++++..+. +...|.+++|+|++.+|+
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEE
Confidence 99999999999998887764 5679999999999999999999999999999999888776 456899999999999999
Q ss_pred EEeCCeEEEEEcCCCCCceeEEEeecC-------------------CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 741 SVSDELVRVWSIGSGSKGECIHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 741 sgsDg~I~IwDl~s~~~~~~i~~~~~~-------------------~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
++.++.|+|||++++ ..+..+..+ ...+++++|+|++.+|++++.||.|+|||+.
T Consensus 619 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 619 AATEHGIKIWDLESK---SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEETTEEEEEETTTT---EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcCCCEEEEECCCC---CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 988989999999987 444444321 1237889999999999999999999999985
No 75
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.6e-32 Score=291.49 Aligned_cols=270 Identities=21% Similarity=0.391 Sum_probs=229.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+.+|+||+++ +||+|. |++|+|||+.+++++..+ .+|...|++++|+|++++|++|+.||+|+|||+.+++ .+..
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN 104 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEE
Confidence 5789999986 777765 899999999999988766 4678899999999999999999999999999999866 4788
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
+.+|...+.++.+.+ .++++++.++.+++|+...... +..+. +...+..+.+.+++.++++++.|+.|++||+++
T Consensus 105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence 899999998888764 3788999999999999987543 33333 466799999999999999999999999999987
Q ss_pred Ce----EEEEEcCCCCCEEEEEEcCCCCEE-E--EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 714 QV----CRLKLQGHKNQVHSVCWNTSGEYL-A--SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 714 ~~----~~~~l~~h~~~V~sl~~spdg~~L-a--sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
++ .......|...|.++++++++..+ . +++ ++.|++||.... ... ....+...+..+.|++++..+++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence 64 345566788899999999976533 3 333 789999999876 333 33446778999999999999888
Q ss_pred EE--cCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 786 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 786 gs--~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++ .|+.|+|||+.+++.+ .+.+|.+.|++++|+|++++||||+.||+|+|||
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 76 6889999999999888 7889999999999999999999999999999997
No 76
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.1e-33 Score=307.76 Aligned_cols=276 Identities=17% Similarity=0.145 Sum_probs=241.5
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC----C---CEEEEEECCCcE
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKA 579 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd----g---~~Lasgs~Dg~I 579 (837)
.++++|+.|+.|++|........ ..+..+..+.+|...|++++|+|+ + ++|++++.|+.|
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNE-------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTC-------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred CeEEEEcCCCEEEEEECCCcccc-------------cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 68899999999999976544211 112345667799999999999999 9 999999999999
Q ss_pred EEEeCCCCeE-----EEEeccC-----CCCeEEEEEc----CCCCE-EEEEeCCCeEEEEEcCC------CCceeE----
Q 003236 580 VLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR---- 634 (837)
Q Consensus 580 ~VWd~~t~~~-----~~~l~~h-----~~~I~~l~fs----pdg~~-Latgs~Dg~I~IWDl~~------~~~~~~---- 634 (837)
++||+.+++. +..+..| ...|.+++|+ |++.+ |++++.||.|++||+.+ ... +.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 172 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPT 172 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCc
Confidence 9999988776 7888888 5999999999 99999 99999999999999987 443 33
Q ss_pred -Ee-------eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-------CCCeeEEEEecCCCEEEE
Q 003236 635 -TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-------QSGATQMRFQPRLGRILA 699 (837)
Q Consensus 635 -~~-------~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-------~~~i~sl~~sp~g~~lla 699 (837)
.+ ..|...|.+++|+|++ ++++++.|+.|++||+++++.+..+.. ...+.+++|+|++.+|++
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 45 4488999999999997 777999999999999999999998886 778999999999999999
Q ss_pred EEcC---CeEEEEECCCCeEEEEEcC-------------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEE
Q 003236 700 AAIE---NYISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH 762 (837)
Q Consensus 700 gs~d---g~I~iwDl~s~~~~~~l~~-------------h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~ 762 (837)
++.| +.|++||+++++.+..+.. |...|.+++|+|++.+|++++ |+.|+|||++++ .++.
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~ 327 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERIT 327 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeE
Confidence 9999 9999999999999999998 999999999999999999999 999999999887 7777
Q ss_pred Eee------cC---------------CCceEEEEEeCCC----------CEEEEEEcCCeEEEEECCCCc
Q 003236 763 ELS------CT---------------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 763 ~~~------~~---------------~~~I~sv~fspdg----------~~L~sgs~dg~I~IwDl~s~~ 801 (837)
.+. .| ...|.+++|+|++ .+|++++.|+.|++||+.+++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 787 77 8999999999998 799999999999999998764
No 77
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.8e-32 Score=311.31 Aligned_cols=271 Identities=22% Similarity=0.402 Sum_probs=241.7
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
+....+|...|+|+.| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||+|++||+.
T Consensus 126 ~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 4445578888999887 7899999999999999999999999999999999999999 78899999999999999999
Q ss_pred CCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee---EEe-cCCCeeEEEEecCCCEEEEEEcC
Q 003236 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---VFK-CQSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 628 ~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~---~~~-~~~~i~sl~~sp~g~~llags~d 703 (837)
+++ .+..+.+|...|.+++|+++ ++++|+.||.|++||+.++.... .+. +...|.++.| +++++++++.|
T Consensus 202 ~~~-~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~d 275 (435)
T 1p22_A 202 TGE-MLNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 275 (435)
T ss_dssp SCC-EEEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETT
T ss_pred CCc-EEEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCC
Confidence 876 47888899999999999743 78899999999999999877652 232 3567888888 67899999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCE
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
+.|++||+++++.+..+.+|...|.++.|+ +.+|++++ |+.|++||++++ .++..+..|...|.+++| ++.+
T Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 276 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSSE
T ss_pred CeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCCE
Confidence 999999999999999999999999999994 67888888 999999999987 788889999999999999 7789
Q ss_pred EEEEEcCCeEEEEECCCCc---------EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 783 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~~---------~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|++++.||.|++||+.++. .+ .+.+|.+.|.+++| ++.+|++|+.||.|+|||
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence 9999999999999986654 44 77899999999999 688999999999999997
No 78
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-31 Score=290.32 Aligned_cols=272 Identities=14% Similarity=0.163 Sum_probs=241.3
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.|++|..... ..+..+.+|.+.|++++|+|++++|++++.||.|++||+
T Consensus 43 ~~~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVWYSLNG-------------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp TSCEEEEEESSSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred CCCEEEEEeCCCEEEEEeCCCc-------------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 3468899999999999965432 245677899999999999999999999999999999999
Q ss_pred CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCc----------eeEEeecccc--ceEEEE
Q 003236 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLD 647 (837)
Q Consensus 585 ~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~~----------~~~~~~~h~~--~V~sl~ 647 (837)
.+++.+..+. |...|.+++|+|++.+|++++.+ +.|++||+..... .+..+..|.. .+.+++
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 9999998887 88999999999999999999999 9999999986542 2345556666 899999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 003236 648 FHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 725 (837)
Q Consensus 648 fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~ 725 (837)
|+|++. ++++++.||.|++||+++ ...+..+.. ...|.+++|+|++.+|++++.|+.|++||+++++.+..+. +..
T Consensus 183 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~ 260 (369)
T 3zwl_B 183 WSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC 260 (369)
T ss_dssp ECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred EcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence 999977 566888999999999998 677777764 6779999999999999999999999999999999888887 788
Q ss_pred CEEEEEEcCCCCEEEEEe-CC--------------eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003236 726 QVHSVCWNTSGEYLASVS-DE--------------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 726 ~V~sl~~spdg~~Lasgs-Dg--------------~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg 790 (837)
.+.+++|+|++.++++++ ++ .|++||+.++ ..+..+..|...|.+++|+|++.+|++++.|+
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 337 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDG 337 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence 999999999999999988 66 8999999888 67888889999999999999999999999999
Q ss_pred eEEEEECCCCc
Q 003236 791 TLELWNMTENK 801 (837)
Q Consensus 791 ~I~IwDl~s~~ 801 (837)
.|++|++..+.
T Consensus 338 ~v~iw~~~~~~ 348 (369)
T 3zwl_B 338 FIRLHHFEKSY 348 (369)
T ss_dssp EEEEEEECHHH
T ss_pred eEEEEECcccc
Confidence 99999997654
No 79
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=299.96 Aligned_cols=277 Identities=15% Similarity=0.271 Sum_probs=232.0
Q ss_pred CeEEcccC---CCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC---CCEEEEEECCCcEE
Q 003236 507 RFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAV 580 (837)
Q Consensus 507 ~~v~~Gs~---D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd---g~~Lasgs~Dg~I~ 580 (837)
.++++|+. |+.|++|...... .. .....+|...|++++|+|+ +.+|++|+.||.|+
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGD-----------------LK-LLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSS-----------------EE-EEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred eEEEecCccCCCcEEEEEeCCCCc-----------------cc-ceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 57788887 8999999664321 11 1122378999999999998 69999999999999
Q ss_pred EEeCCCCe-EEEEeccCCCCeEEEEE------cCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecccc----ceEEEE--
Q 003236 581 LWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----TVMSLD-- 647 (837)
Q Consensus 581 VWd~~t~~-~~~~l~~h~~~I~~l~f------spdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~----~V~sl~-- 647 (837)
+||+.+++ .+..+.+|...|.+++| +|++++|++++.||.|++||+.++...+..+..|.. .|.+++
T Consensus 94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEE
Confidence 99999888 88899999999999955 678999999999999999999987755677766554 899998
Q ss_pred --EcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEE---
Q 003236 648 --FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLK--- 719 (837)
Q Consensus 648 --fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp---~g~~llags~dg~I~iwDl~s~~~~~~--- 719 (837)
|+|++. ++++++.|+.|++||+++++......+...+.+++|+| ++..+++++.|+.|++||++++..+..
T Consensus 174 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 174 NAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp CCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred eccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence 677765 66788999999999999999988888889999999999 899999999999999999987654433
Q ss_pred --EcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCc----------------eeEEEeecCCCceEEEEEeCC
Q 003236 720 --LQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKG----------------ECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 720 --l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~----------------~~i~~~~~~~~~I~sv~fspd 779 (837)
+.+|...|++++|+|++. +|++++ |+.|++||++..... ..+..+..|...|.+++|+|+
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 332 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD 332 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence 348999999999999998 788888 999999999875432 467788899999999999999
Q ss_pred CCEEE-EEEcCCeEEEEECCCCcE
Q 003236 780 FPSLL-VIGCYETLELWNMTENKT 802 (837)
Q Consensus 780 g~~L~-sgs~dg~I~IwDl~s~~~ 802 (837)
+.+|+ +++.|+.|+|||+.+.+.
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp STTEEEEEETTSEEEEEEECC---
T ss_pred CCeEEEEecCCCcEEEEECCCccc
Confidence 99998 799999999999987654
No 80
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=6e-32 Score=297.28 Aligned_cols=279 Identities=17% Similarity=0.226 Sum_probs=235.7
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++|+.|+.|++|..... .+..+..+.+|...|++++|+|++++|++++.|+.|++||+
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGN-----------------KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETT-----------------EEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCC-----------------cEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 3478899999999999955322 23467778899999999999999999999999999999999
Q ss_pred CCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---eeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 585 ESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 585 ~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~---~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
.+++.... +..|...|.+++|+|++++|++++.|+.|++||+..... .......|...|.+++|+|++. +++++
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~ 160 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAG 160 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEE
Confidence 88875544 467999999999999999999999999999999998663 2344467899999999999876 66688
Q ss_pred eCCCcEEEEECC------------------CCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE
Q 003236 660 DNNSEIRYWSIN------------------NGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 720 (837)
Q Consensus 660 s~Dg~I~vwDl~------------------t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l 720 (837)
+.|+.|++||++ .++++..+. +...+.+++|+|++.+|++++.|+.|++||+++++++..+
T Consensus 161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 999999999954 567777774 4567999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC--CC-----------------------------CceeE------EE
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS--GS-----------------------------KGECI------HE 763 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s--~~-----------------------------~~~~i------~~ 763 (837)
..|...|.+++|+|++.+|+++.|+.|++|++.+ +. ..... ..
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 320 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred ccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence 9999999999999999999988899999999987 31 00110 22
Q ss_pred e-ecCCCceEEEEEe-CCC---CEEEEEEcCCeEEEEECCCCc
Q 003236 764 L-SCTGNKFHSCVFH-PTF---PSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 764 ~-~~~~~~I~sv~fs-pdg---~~L~sgs~dg~I~IwDl~s~~ 801 (837)
+ .+|...|.+++|. +++ .+|++++.|+.|++||+.+++
T Consensus 321 ~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 2 3788999999866 666 899999999999999987644
No 81
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=339.17 Aligned_cols=329 Identities=11% Similarity=0.041 Sum_probs=244.9
Q ss_pred CCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCC-CCEEEEEECCC
Q 003236 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDK 577 (837)
Q Consensus 499 ~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg 577 (837)
...+.+...++++|+.|+.|++|...........+...+.. ...+.+|.+.|++++|+|+ +.+|++|+.|+
T Consensus 103 ~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~--------~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg 174 (902)
T 2oaj_A 103 SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS--------SFFPAARLSPIVSIQWNPRDIGTVLISYEYV 174 (902)
T ss_dssp EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH--------HTCSSSCCCCCCEEEEETTEEEEEEEECSSC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc--------ccccccCCCCeEEEEEccCCCCEEEEEeCCC
Confidence 34455667899999999999999765431000000000000 0234789999999999996 57899999999
Q ss_pred cEEEEeCCCCeEEEEeccC------------------CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE-Ee--
Q 003236 578 KAVLWCTESFTVKSTLEEH------------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TF-- 636 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h------------------~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~-~~-- 636 (837)
.| |||+.+++.+..+..| ...|++++|+|++.+|++++.||+|++||+.+++.... .+
T Consensus 175 ~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~ 253 (902)
T 2oaj_A 175 TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFE 253 (902)
T ss_dssp EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSC
T ss_pred cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecc
Confidence 99 9999999999888765 57899999999999999999999999999988654221 12
Q ss_pred -ec-------------cccceEEEEEc----CCCCeEEEEEeCC-----CcEEEEE------------------------
Q 003236 637 -TG-------------HSTTVMSLDFH----PSKEDLLCSCDNN-----SEIRYWS------------------------ 669 (837)
Q Consensus 637 -~~-------------h~~~V~sl~fs----pdg~~llasgs~D-----g~I~vwD------------------------ 669 (837)
.. |...|.+++|+ |++..++++|+.| ..|++|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 333 (902)
T 2oaj_A 254 TEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQ 333 (902)
T ss_dssp SCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSE
T ss_pred cccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccc
Confidence 11 34578999995 4433566666433 1444444
Q ss_pred -----------------------------------------------CCCCeeeeE-------Ee-cCCCee--------
Q 003236 670 -----------------------------------------------INNGSCAGV-------FK-CQSGAT-------- 686 (837)
Q Consensus 670 -----------------------------------------------l~t~~~i~~-------~~-~~~~i~-------- 686 (837)
+.++..... +. ++..|+
T Consensus 334 ~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~ 413 (902)
T 2oaj_A 334 MKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVP 413 (902)
T ss_dssp EEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEE
T ss_pred eEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcC
Confidence 333321110 00 011223
Q ss_pred --------------------------EEEEecCCCEEEEEEcCCeEEEEECCCCeE----EEE--Ec-----CCCCCEEE
Q 003236 687 --------------------------QMRFQPRLGRILAAAIENYISILDVETQVC----RLK--LQ-----GHKNQVHS 729 (837)
Q Consensus 687 --------------------------sl~~sp~g~~llags~dg~I~iwDl~s~~~----~~~--l~-----~h~~~V~s 729 (837)
+++|+|+++.|++++.|++|++||+.++.. ... +. +|...|.+
T Consensus 414 ~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~s 493 (902)
T 2oaj_A 414 NKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDK 493 (902)
T ss_dssp HHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEE
T ss_pred HHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeE
Confidence 344568888999999999999999987632 111 12 78999999
Q ss_pred EEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------------------------------------ceeEEEeec
Q 003236 730 VCWNTSGEYLASVS-DELVRVWSIGSGSK------------------------------------------GECIHELSC 766 (837)
Q Consensus 730 l~~spdg~~Lasgs-Dg~I~IwDl~s~~~------------------------------------------~~~i~~~~~ 766 (837)
|+|+||+++||+++ |++|+|||+.++.. ..++..+..
T Consensus 494 vafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 573 (902)
T 2oaj_A 494 ISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA 573 (902)
T ss_dssp EEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC
T ss_pred EEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEc
Confidence 99999999999999 99999999986521 134677888
Q ss_pred CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE------e-ccCCCCeeEEEEe-----CCC---CEEEEEECCC
Q 003236 767 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT------L-SAHDKLVSSLAAS-----TVN---GMVASASHDK 831 (837)
Q Consensus 767 ~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~------l-~~h~~~V~sla~s-----pdg---~~LaSgs~DG 831 (837)
|...|++++|+|+| +|++|+.|++|+|||+.+..++. + .+|...|++|+|+ ||| .+|++|+.||
T Consensus 574 h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 574 NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 99999999999999 99999999999999998887652 2 2789999999999 885 8999999999
Q ss_pred cEEEeC
Q 003236 832 CVKIWK 837 (837)
Q Consensus 832 ~I~IWd 837 (837)
+|++||
T Consensus 653 tv~~wd 658 (902)
T 2oaj_A 653 EVITYK 658 (902)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 999996
No 82
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.1e-31 Score=303.12 Aligned_cols=272 Identities=25% Similarity=0.470 Sum_probs=242.4
Q ss_pred EEEEecCCCCCe-EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 547 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 547 ~~~~l~~H~~~V-~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
....+.+|.+.| +| ++++|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +.+|++++.||+|++||
T Consensus 110 ~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 110 SPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred eeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence 356788999875 55 45568999999999999999999999999999999999999997 56999999999999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCC
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIEN 704 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg 704 (837)
+.+++ .+..+.+|...|.+++|++ ..+++|+.||.|++||+.+++++..+.. ...+.++.+ ++..+++++.|+
T Consensus 186 ~~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 186 AETGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp TTTTE-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred CCcCc-EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 99865 4788889999999999973 3677999999999999999998888764 567888888 678999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
.|++||+++++++..+.+|...|.+++| ++.+|++++ |+.|++||++++ .++..+..|...+.++.++ +.+|
T Consensus 260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l 332 (445)
T 2ovr_B 260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNIL 332 (445)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEE
T ss_pred EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEE
Confidence 9999999999999999999999999999 788999988 999999999987 6788888888888888875 5689
Q ss_pred EEEEcCCeEEEEECCCCcEE-Eecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 784 LVIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 784 ~sgs~dg~I~IwDl~s~~~~-~l~~---h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++++.|+.|++||+.+++.+ .+.. |...|++++|+ +.+|++|+.||.|+|||
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD 388 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence 99999999999999998877 4444 88999999995 68999999999999996
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-31 Score=301.11 Aligned_cols=273 Identities=18% Similarity=0.253 Sum_probs=233.3
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
..+++++.|+.|++|...... ....+. .|...|++++|+|++++|++|+.||.|+|||+.
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~-------------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGS-------------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCC-------------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCEEEEECCCeEEEeeCCCCc-------------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 456778899999999664331 122222 389999999999999999999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
+++.+..+..|...|.+++| ++.+|++++.||.|++||+......+..+.+|...|.+++|+|++. +|++++.|+.|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v 241 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVV 241 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeE
Confidence 99999999999999999999 4679999999999999999976777888999999999999999866 66789999999
Q ss_pred EEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEE---cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEE
Q 003236 666 RYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 741 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags---~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Las 741 (837)
++||+++++.+..+. +...|.+++|+|++..+++.+ .|+.|++||+++++++..+. +...|.+++|+|++.+|++
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence 999999998887775 467799999999876665544 59999999999999988886 6778999999999999998
Q ss_pred E--e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 742 V--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 742 g--s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+ . |+.|+|||+.++.. .....+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus 321 ~~g~~dg~i~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGL-TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTTCEEEEEEEETTEE-EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred EeecCCCcEEEEecCCccc-eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 4 3 99999999987532 344456788999999999999999999999999999999998876
No 84
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.2e-32 Score=299.83 Aligned_cols=249 Identities=20% Similarity=0.271 Sum_probs=205.8
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWD 625 (837)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|++++|++ ++.+|++|+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456999999999999999999999999999999998765 4678899999999999986 489999999999999999
Q ss_pred cCCCC-ceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeee---eEE-ecCCCeeEEEEecC------
Q 003236 626 TENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVF-KCQSGATQMRFQPR------ 693 (837)
Q Consensus 626 l~~~~-~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t~~~i---~~~-~~~~~i~sl~~sp~------ 693 (837)
+.++. .....+.+|...|.+++|+|++ ..+|++++.|+.|++||++.+... ..+ .+...+.++.|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98764 3456778899999999999983 457789999999999999876322 222 13456889999987
Q ss_pred -----------CCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEEEEEEcCCC----CEEEEEe-CCeEEEEEcCC
Q 003236 694 -----------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGS 754 (837)
Q Consensus 694 -----------g~~llags~dg~I~iwDl~s~---~~~~~l~~h~~~V~sl~~spdg----~~Lasgs-Dg~I~IwDl~s 754 (837)
+.+|++++.|+.|++||++.. .++..+.+|...|.+++|+|++ .+|++++ |++|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 368999999999999999754 5677888999999999999986 7899998 99999999986
Q ss_pred CCCc-eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 755 GSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 755 ~~~~-~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
.... .....+..|...|.+++|+|++.+|++++.|+.|+||+..
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 3211 1222345678899999999999999999999999999975
No 85
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.7e-32 Score=292.19 Aligned_cols=247 Identities=19% Similarity=0.359 Sum_probs=210.5
Q ss_pred EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-CceeEEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEEE
Q 003236 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW 668 (837)
Q Consensus 591 ~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~-~~~~~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vw 668 (837)
..+.+|.+.|++++|+|++++|++|+.|++|+|||+... ...+..+.+|...|.+++|+++ ...+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 457789999999999999999999999999999999753 2356888999999999999864 24578899999999999
Q ss_pred ECCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe--EEEEEcCCCCCEEEEEEcCC------
Q 003236 669 SINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------ 735 (837)
Q Consensus 669 Dl~t~~--~i~~~~-~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~~--~~~~l~~h~~~V~sl~~spd------ 735 (837)
|+++++ .+..+. +...|.+++|+|+ +..|++++.|+.|++||+++.. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 999874 334443 4567999999997 7899999999999999998753 24567789999999999997
Q ss_pred -------CCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCc--
Q 003236 736 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK-- 801 (837)
Q Consensus 736 -------g~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg---~~L~sgs~dg~I~IwDl~s~~-- 801 (837)
+.+|++++ |+.|+|||++++.. ......+.+|...|.+++|+|++ .+|++++.|++|+|||+.+..
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 56899998 99999999987642 22566788999999999999985 789999999999999997743
Q ss_pred --EEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 802 --TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 802 --~~~l--~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
...+ ..|...|.+++|+|++++||+++.||.|+||+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence 1223 46888999999999999999999999999995
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.9e-32 Score=296.50 Aligned_cols=288 Identities=17% Similarity=0.234 Sum_probs=236.9
Q ss_pred CCceEEEEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEe--cCCCCC
Q 003236 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PASTSK 557 (837)
Q Consensus 480 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l--~~H~~~ 557 (837)
.....+.|+++. .+.+..+.+++.++.|++|..... .....+..+ ..|...
T Consensus 19 ~~v~~i~~~p~~-----------~~~~~~~~~~~~~~~v~vw~~~~~----------------~~~~~~~~~~~~~~~~~ 71 (366)
T 3k26_A 19 QPLFGVQFNWHS-----------KEGDPLVFATVGSNRVTLYECHSQ----------------GEIRLLQSYVDADADEN 71 (366)
T ss_dssp SCEEEEEECTTC-----------CTTSCEEEEEEETTEEEEEEECGG----------------GCEEEEEEEECSCTTCC
T ss_pred CceEEEEEeccc-----------CCCCceEEEECCCCEEEEEEcCCC----------------cEEEeeeeccccCCCCc
Confidence 355666666642 122345555666679999966432 112222222 248899
Q ss_pred eEEEEEcCC----CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCce
Q 003236 558 VESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS 632 (837)
Q Consensus 558 V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~ 632 (837)
|++++|+|+ +.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++.
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~- 150 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL- 150 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-
Confidence 999999999 67999999999999999999999999999999999999999 899999999999999999998653
Q ss_pred eEEe---eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-----------------------------
Q 003236 633 LRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------------------------- 680 (837)
Q Consensus 633 ~~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----------------------------- 680 (837)
+..+ .+|...|.+++|+|++. ++++++.||.|++||+++++....+.
T Consensus 151 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 151 VAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp EEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred EEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 5555 68999999999999876 56688899999999999876554332
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--------------eEEEEEcCCCCCEEEEEEcCC--CCEEEEEe-
Q 003236 681 CQSGATQMRFQPRLGRILAAAIENYISILDVETQ--------------VCRLKLQGHKNQVHSVCWNTS--GEYLASVS- 743 (837)
Q Consensus 681 ~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~--------------~~~~~l~~h~~~V~sl~~spd--g~~Lasgs- 743 (837)
+...|.+++|+ +.++++++.|+.|++||+++. ..+..+..|...|++++|+|+ +.+|++++
T Consensus 230 ~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 230 HRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred CcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence 56779999999 679999999999999999876 347888899999999999999 99999999
Q ss_pred CCeEEEEEcCCCCCce-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 744 DELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~-~i~~~~~~--~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
|+.|++||+.++.... .+..+..| ...|.+++|+|++.+|++++.|+.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999875432 45566666 7899999999999999999999999999985
No 87
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6.3e-31 Score=297.39 Aligned_cols=272 Identities=19% Similarity=0.308 Sum_probs=233.0
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
+++++| +|++|++|....+ ....+..+.+|...|+||+|+|||++||+|+.||+|+|||+.+
T Consensus 117 n~lAvg-ld~tV~lWd~~tg-----------------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 117 NVLAVA-LDNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp SEEEEE-ETTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC-----------------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence 577776 5899999965433 1122334568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
++.+..+.+|...|.++.|+ +.+|++|+.|+.+++||.......+..+.+|...+.++.|+|++. ++++++.|+.|+
T Consensus 179 ~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~ 255 (420)
T 4gga_A 179 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 255 (420)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccce
Confidence 99999999999999998885 679999999999999999988878889999999999999999976 666899999999
Q ss_pred EEECCCCeee----e-EEecCCCeeEEEEecCCCEEE-EEE--cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 667 YWSINNGSCA----G-VFKCQSGATQMRFQPRLGRIL-AAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 667 vwDl~t~~~i----~-~~~~~~~i~sl~~sp~g~~ll-ags--~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
+||+.+++.. . ...+...|.+++|+|.+..++ +++ .|+.|++||+.++.+...+..| ..+.++.|++++..
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~ 334 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKE 334 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTE
T ss_pred EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCe
Confidence 9999876532 2 223467799999999766554 333 5899999999999999888754 67899999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 739 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 739 Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+++++ |+.|+|||+.++ .++..+.+|...|.+++|+|++.+|++++.|++|+|||+.+....
T Consensus 335 lv~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 335 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 88764 889999999987 788899999999999999999999999999999999999776544
No 88
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=294.84 Aligned_cols=251 Identities=21% Similarity=0.308 Sum_probs=217.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 623 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 623 (837)
+..+.+|.+.|++++|+|++++||+|+.||.|+|||+. +.+.+..+.+|...|++++|+++ +.+|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 45678999999999999999999999999999999998 66777889999999999999987 999999999999999
Q ss_pred EEcCCCCc-eeEEeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeee---EEecCCCeeEEEEec-----
Q 003236 624 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAG---VFKCQSGATQMRFQP----- 692 (837)
Q Consensus 624 WDl~~~~~-~~~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~---~~~~~~~i~sl~~sp----- 692 (837)
||+.++.. .+..+..|...|.+++|+|+ +. ++++++.|+.|++||++++.... ...+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 99998652 46777889999999999998 55 67789999999999999874332 223467899999999
Q ss_pred --------CCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCC
Q 003236 693 --------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 693 --------~g~~llags~dg~I~iwDl~s~----~~~~~l~~h~~~V~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
++..+++++.|+.|++||++++ .....+.+|...|.+++|+|+ +.+|++++ |+.|+|||++++.
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 6899999999999999999865 356678889999999999999 89999999 9999999999864
Q ss_pred CceeEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 757 KGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 757 ~~~~i~~~--~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
.......+ ..+...|.+++|+|++.+|++++.|+.|++||+..
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 32233333 33778899999999999999999999999999873
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-31 Score=282.95 Aligned_cols=268 Identities=16% Similarity=0.204 Sum_probs=231.0
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
.+.++++|+.|+.|++|..... .....+..|...|.+++|+|++++|++|+.|+.|++|++
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKDDQ-------------------WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp ETTEEEEEETTSEEEEEEESSS-------------------EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred CCCEEEEEEcCCcEEEEECCCC-------------------EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 3467899999999999965322 235667789999999999999999999999999999998
Q ss_pred CCC---eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC
Q 003236 585 ESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661 (837)
Q Consensus 585 ~t~---~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~ 661 (837)
... +.+..+..|...|.+++| ++.+|++++.|+.|++|| .......+..|...|.+++|.|....++++++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 89 FATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp TCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred eecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 653 567788899999999999 577999999999999999 234577888899999999999844557779999
Q ss_pred CCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEE
Q 003236 662 NSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 739 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~L 739 (837)
|+.|++||. .+....+. +...+.+++|+|++. +++++.|+.|++||+++++.+..+..|...|++++|+|++. |
T Consensus 164 d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l 239 (313)
T 3odt_A 164 DKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-I 239 (313)
T ss_dssp TSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-E
T ss_pred CCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-E
Confidence 999999994 45555554 567899999999977 99999999999999999999999999999999999999995 5
Q ss_pred EEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 003236 740 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 804 (837)
Q Consensus 740 asgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~ 804 (837)
++++ |+.|++||+.++ ..+..+..+...|.+++|+|++. +++++.|+.|++||+.+++...
T Consensus 240 ~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 240 VSCGEDRTVRIWSKENG---SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEEETTSEEEEECTTTC---CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred EEEecCCEEEEEECCCC---ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 5555 999999999988 67888888999999999999998 7789999999999999887653
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.7e-31 Score=296.93 Aligned_cols=267 Identities=15% Similarity=0.166 Sum_probs=221.5
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~ 585 (837)
.++++|+.|+.|++|...... ......+.+|.+.|.+++|+| ++.+|++++.|+.|++||+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQN-----------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTT-----------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred CEEEEEcCCCeEEEEeCCCcc-----------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence 689999999999999765331 111222347999999999999 78999999999999999998
Q ss_pred CCeEEEEecc---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 586 SFTVKSTLEE---HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 586 t~~~~~~l~~---h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
+ ..+..+.. |...|.+++|+|++.+|++++.|+.|++||+. ...+..+.+|...|.+++|+|++..++++++.|
T Consensus 150 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 150 G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred C-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 6 44545543 45889999999999999999999999999995 335788889999999999999988788899999
Q ss_pred CcEEEEECCC----CeeeeEEecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-------------
Q 003236 663 SEIRYWSINN----GSCAGVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK------------- 724 (837)
Q Consensus 663 g~I~vwDl~t----~~~i~~~~~~~~i~sl~~sp-~g~~llags~dg~I~iwDl~s~~~~~~l~~h~------------- 724 (837)
+.|++||+++ +.++..+.+...+.+++|+| ++.+|++++.|+.|++||++++.....+..|.
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT 306 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred CEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence 9999999998 67788888888999999999 99999999999999999999876655555432
Q ss_pred ----CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 725 ----NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 725 ----~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
..+..++|+|++++ +++ |+.|+|||+.++ .++..+.. +...+..++|+|++.+|++++ |+.|+|||+
T Consensus 307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 23444666666666 444 999999999987 66777776 456777889999999999996 999999998
Q ss_pred CC
Q 003236 798 TE 799 (837)
Q Consensus 798 ~s 799 (837)
++
T Consensus 381 ~~ 382 (383)
T 3ei3_B 381 ED 382 (383)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.8e-32 Score=302.39 Aligned_cols=278 Identities=14% Similarity=0.226 Sum_probs=235.3
Q ss_pred CeEEEEEcCCCCEE-EEEECCCcEEEEeCCCCe----EEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC
Q 003236 557 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 557 ~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~t~~----~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
....++++|+...+ ++++.||.|+||++.... .+..+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34568899876544 457889999999986543 2345778999999999999 89999999999999999999863
Q ss_pred ------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEE
Q 003236 631 ------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAA 701 (837)
Q Consensus 631 ------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~llags 701 (837)
..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++++..+. +...|.+++|+|++..|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 34778889999999999999987788899999999999999999998883 467899999999999999999
Q ss_pred cCCeEEEEECCCCeEEEEE-cCCCCC-EEEEEEcCCCCEEEEE---e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 702 IENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 702 ~dg~I~iwDl~s~~~~~~l-~~h~~~-V~sl~~spdg~~Lasg---s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
.|+.|++||+++++.+..+ ..|... +.+++|+|++.+|+++ + |+.|++||+++......... ..+...+.+++
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~ 274 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPF 274 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEE
Confidence 9999999999999999988 788776 8999999999999998 5 89999999988653222222 24567799999
Q ss_pred EeCCCCEEEEEE-cCCeEEEEECCCCc--EEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 776 FHPTFPSLLVIG-CYETLELWNMTENK--TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 776 fspdg~~L~sgs-~dg~I~IwDl~s~~--~~~l--~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
|+|++.+|++++ .|+.|++||+.+++ ...+ ..|...|.+++|+|++.++++ .|+.+++|+
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 999999997665 69999999999887 3333 346799999999999988775 567899995
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.9e-32 Score=296.67 Aligned_cols=246 Identities=19% Similarity=0.325 Sum_probs=204.9
Q ss_pred EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEEEE
Q 003236 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS 669 (837)
Q Consensus 592 ~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-~~~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwD 669 (837)
.+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.. .+..+.+|...|.+++|+++ ...+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 4568999999999999999999999999999999987643 46778899999999999863 244777999999999999
Q ss_pred CCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCCe---EEEEEcCCCCCEEEEEEcCC------
Q 003236 670 INNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------ 735 (837)
Q Consensus 670 l~t~~--~i~~~~-~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~~---~~~~l~~h~~~V~sl~~spd------ 735 (837)
++++. .+..+. +...|.+++|+|+ +.+|++++.|+.|++||++... ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 99874 344443 4567999999998 7789999999999999998753 23455679999999999997
Q ss_pred -----------CCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEECCC
Q 003236 736 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 736 -----------g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg----~~L~sgs~dg~I~IwDl~s 799 (837)
+.+|++++ |+.|+|||++......++..+..|...|.+++|+|++ .+|++++.|++|+|||+.+
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 46888888 9999999997654335677888999999999999987 7899999999999999876
Q ss_pred C---c--EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 800 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~---~--~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
. . ...+..|...|.+++|+|++.+||+++.||.|+||+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 3 1 124567899999999999999999999999999996
No 93
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.5e-30 Score=293.56 Aligned_cols=285 Identities=9% Similarity=0.043 Sum_probs=244.8
Q ss_pred eEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-----EeccCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 546 ~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-----~l~~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++... .+.+|...|.+++|++++.++++++.|+.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 4455555554 46699999988888888889999999999998887 44578899999999999999999999999
Q ss_pred EEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEE
Q 003236 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llag 700 (837)
|++||+.+++ .+..+..|...+.+++|+|++..++++++.|+.|++||+++++.+..+.....+.+++|+|+++.++++
T Consensus 193 v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLA-YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCC-EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCce-EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEE
Confidence 9999998765 467777889999999999999988888888999999999999998888887889999999999999998
Q ss_pred E--------cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 701 A--------IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 701 s--------~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasg-s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
+ .|+.|++||+++++.+..+. |...+.+++|+|+++.++++ + |+.|++||+.++ +.+..+. +...
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~ 346 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VFDK 346 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSS
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CCCC
Confidence 8 47899999999998777663 56689999999999866554 5 999999999876 5555554 5678
Q ss_pred eEEEEEeCCCCEEEEEEc---------------CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcEE
Q 003236 771 FHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCVK 834 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~---------------dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~-DG~I~ 834 (837)
+.+++|+|++++|++++. ||.|++||+.+++.+....+...+.+++|+|++++|++++. |+.|+
T Consensus 347 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 347 PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEE
Confidence 999999999999998887 46999999999998865555678999999999999998875 99999
Q ss_pred EeC
Q 003236 835 IWK 837 (837)
Q Consensus 835 IWd 837 (837)
||+
T Consensus 427 v~~ 429 (433)
T 3bws_A 427 VYR 429 (433)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-32 Score=300.98 Aligned_cols=279 Identities=14% Similarity=0.168 Sum_probs=219.5
Q ss_pred ccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEE
Q 003236 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (837)
Q Consensus 501 ~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~ 580 (837)
.+.+...++++|+.|+.|++|..... .+..+..+.+|.+.|++++|+|++++|++|+.|++|+
T Consensus 18 ~~s~~g~~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 18 AFNSQRTEFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY 80 (377)
T ss_dssp EECSSSSEEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEE
T ss_pred EECCCCCEEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEE
Confidence 34445579999999999999965422 1234566789999999999999999999999999999
Q ss_pred EEeCCCCe---EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEeec-cccceEEEEEcCCCCe
Q 003236 581 LWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSKED 654 (837)
Q Consensus 581 VWd~~t~~---~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--~~~~~~~-h~~~V~sl~fspdg~~ 654 (837)
|||+.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+.+... ....+.. |...|.+++|+|++.
T Consensus 81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~- 159 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV- 159 (377)
T ss_dssp EC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-
T ss_pred EEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-
Confidence 99999876 6777888999999999999999999999999999999997653 3566666 999999999999876
Q ss_pred EEEEEeCCCcEEEEECC------------------CCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 655 LLCSCDNNSEIRYWSIN------------------NGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~------------------t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
+|++++.|+.|++||+. .++++..+.+...|.+++|+|++.+|++++.|+.|++||++++..
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 67789999999999985 244555555567799999999999999999999999999998876
Q ss_pred ----EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC---------------------------ceeE----
Q 003236 717 ----RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK---------------------------GECI---- 761 (837)
Q Consensus 717 ----~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~---------------------------~~~i---- 761 (837)
+..+.+|...|.+++|+|++.+|++++++.+.+|+...... ...+
T Consensus 240 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (377)
T 3dwl_C 240 PPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTA 319 (377)
T ss_dssp CEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------
T ss_pred cceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccccccccccccccccccc
Confidence 77888999999999999999999999977677887752210 0000
Q ss_pred --EEe----------------ecCCCceEEEEEeCCCC----EEEEEEcCCeEEEEEC
Q 003236 762 --HEL----------------SCTGNKFHSCVFHPTFP----SLLVIGCYETLELWNM 797 (837)
Q Consensus 762 --~~~----------------~~~~~~I~sv~fspdg~----~L~sgs~dg~I~IwDl 797 (837)
..+ ..|...|+++++.+... .|++++.||.|+|||+
T Consensus 320 ~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 320 LRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 011 12888999999766543 5999999999999985
No 95
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.7e-30 Score=287.09 Aligned_cols=314 Identities=15% Similarity=0.256 Sum_probs=226.8
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEE-----EecCCCCCeEEEEEcC-CCCEEEEEECCCcE
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ-----LIPASTSKVESCHFSP-DGKLLATGGHDKKA 579 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~-----~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I 579 (837)
..++++|+.|+.|++|........... ...... ...+|...|++++|+| ++.+|++++.||.|
T Consensus 56 ~~~l~~~~~dg~i~iw~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 124 (408)
T 4a11_B 56 GRYMLSGGSDGVIVLYDLENSSRQSYY-----------TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124 (408)
T ss_dssp CCEEEEEETTSCEEEEECCCCSSSSCE-----------EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceE-----------eccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence 478999999999999977654322111 111111 1246999999999999 78899999999999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEE
Q 003236 580 VLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~I~~l~fspd---g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ll 656 (837)
++||+.+++....+. +...+.++.|++. +.+|++++.|+.|++||+.++.. +..+..|...|.+++|+|++..++
T Consensus 125 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll 202 (408)
T 4a11_B 125 KVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYIL 202 (408)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTTEE
T ss_pred EEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCcEE
Confidence 999999999888886 7788999999984 45999999999999999998654 778888999999999999998888
Q ss_pred EEEeCCCcEEEEECCCCe-eeeEE----------------ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003236 657 CSCDNNSEIRYWSINNGS-CAGVF----------------KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~-~i~~~----------------~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~ 719 (837)
++++.||.|++||++++. ++..+ .+...|.+++|+|++.+|++++.|+.|++||+++++....
T Consensus 203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 282 (408)
T 4a11_B 203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV 282 (408)
T ss_dssp EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCC
T ss_pred EEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcccee
Confidence 899999999999998765 33333 2356799999999999999999999999999998876544
Q ss_pred EcCCC------CCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 720 LQGHK------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 720 l~~h~------~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
+..+. .....+.......+++++.|+.|++||+.++ ..+..+..|...|.+++|+|++.+|++++.|+.|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 359 (408)
T 4a11_B 283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359 (408)
T ss_dssp CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence 43221 1222233334455666666999999999987 78888999999999999999999999999999999
Q ss_pred EEECCCCcEEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003236 794 LWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 794 IwDl~s~~~~~l~~h~~~V~sla~sp-dg~~LaSgs~DG~I~IWd 837 (837)
+||+.+++.+......... ..+.+ ....+.+++.|+.+++|+
T Consensus 360 iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 360 AWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp EEEECC---------------------------------------
T ss_pred EEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence 9999998876332222222 22233 334566777899999995
No 96
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.5e-31 Score=302.28 Aligned_cols=274 Identities=15% Similarity=0.200 Sum_probs=219.8
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~ 584 (837)
+.++++|+.|++|++|...... ...+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||+
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 3689999999999999654321 112344678999999999998 7899999999999999999
Q ss_pred CCCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC
Q 003236 585 ESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 585 ~t~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D 662 (837)
++........ .+...+.+++|+|++.+|++|+.||.|++||++.. .+..+.+|...|.+++|+|++..++++++.|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 195 KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 8765544443 34456889999999999999999999999999753 3677889999999999999999899999999
Q ss_pred CcEEEEECCCCeeeeEE----ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCC------CEEEEEE
Q 003236 663 SEIRYWSINNGSCAGVF----KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN------QVHSVCW 732 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~----~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~------~V~sl~~ 732 (837)
+.|++||+++.+....+ .+...|.+++|+|++.+|++++.|+.|++||++++.+...+..|.. .+..+.|
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 99999999887654433 3467899999999999999999999999999999887777766543 2334577
Q ss_pred cCCCCEEEEEe-------------CCeEEEEEcCCCCCceeEEEe-ecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEEC
Q 003236 733 NTSGEYLASVS-------------DELVRVWSIGSGSKGECIHEL-SCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 733 spdg~~Lasgs-------------Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv-~fspdg~~L~sgs~dg~I~IwDl 797 (837)
+|++.+++++. ++.|++||+.++ ..+..+ ..|...|.++ +|+|++.+|++++ |+.|+|||+
T Consensus 353 ~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 353 HPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp CSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred cCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 77777776653 247999999887 555554 4567778777 6999999887765 889999999
Q ss_pred CCCcE
Q 003236 798 TENKT 802 (837)
Q Consensus 798 ~s~~~ 802 (837)
++++.
T Consensus 429 ~~gk~ 433 (435)
T 4e54_B 429 QEART 433 (435)
T ss_dssp C----
T ss_pred CcCee
Confidence 98864
No 97
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1e-30 Score=287.49 Aligned_cols=250 Identities=20% Similarity=0.363 Sum_probs=214.4
Q ss_pred eEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcE
Q 003236 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEI 665 (837)
Q Consensus 588 ~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I 665 (837)
+.+..+.+|.+.|++++|+|++++|++++.||.|+|||+.... ..+..+.+|...|.+++|+++. ..+|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4566788999999999999999999999999999999998432 3456788999999999998762 3477799999999
Q ss_pred EEEECCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcC----
Q 003236 666 RYWSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT---- 734 (837)
Q Consensus 666 ~vwDl~t~~--~i~~~~-~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~--~~~~~l~~h~~~V~sl~~sp---- 734 (837)
++||+.+++ .+..+. +...|.+++|+|+ +..+++++.|+.|++||++.. .....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 444444 4678999999999 899999999999999999887 34556778999999999999
Q ss_pred ---------CCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCC
Q 003236 735 ---------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 735 ---------dg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~~I~sv~fspd---g~~L~sgs~dg~I~IwDl~s~ 800 (837)
++.+|++++ |+.|++||++++... ..+..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 699999998 999999999876432 355678889999999999999 899999999999999999887
Q ss_pred c----EE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 801 K----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 801 ~----~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
. .. ....|...|++++|+|++++|++++.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 4 22 2334889999999999999999999999999996
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.98 E-value=2.4e-29 Score=270.27 Aligned_cols=270 Identities=19% Similarity=0.292 Sum_probs=227.6
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t 586 (837)
+++++| .|++|++|....+ .. .....+.+|...|++++|+|++++||+|+.||+|+|||+.+
T Consensus 37 ~~lAvg-~D~tV~iWd~~tg----------------~~-~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 37 NVLAVA-LDNSVYLWSASSG----------------DI-LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp SEEEEE-ETTEEEEEETTTC----------------CE-EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEE-eCCEEEEEECCCC----------------CE-EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence 466766 5899999965432 11 12234568899999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
++.+..+.+|...+.++.+ ++..|++++.++.+++|+.......+..+.+|...+.++.|.+++. ++++++.|+.|+
T Consensus 99 ~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~ 175 (318)
T 4ggc_A 99 QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN 175 (318)
T ss_dssp TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred ceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCccee
Confidence 9999999999999887766 4679999999999999999988888889999999999999999976 566999999999
Q ss_pred EEECCCCeeee-----EEecCCCeeEEEEecCCCEEE---EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 667 YWSINNGSCAG-----VFKCQSGATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 667 vwDl~t~~~i~-----~~~~~~~i~sl~~sp~g~~ll---ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
+||+++++... .......+.++.+++.+..++ +++.++.|++||.+......... +...+..++|++++..
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 254 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKE 254 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTE
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccc
Confidence 99998765322 222356789999999776544 33457899999999887776655 6778999999999998
Q ss_pred EEEEe---CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc
Q 003236 739 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 801 (837)
Q Consensus 739 Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~ 801 (837)
+++++ |+.|+|||++++ +++..+.+|...|++++|+|++.+|++++.|++|+|||+.+..
T Consensus 255 ~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 255 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 87654 889999999988 7888999999999999999999999999999999999987653
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=5.9e-30 Score=290.59 Aligned_cols=281 Identities=18% Similarity=0.365 Sum_probs=227.7
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~ 585 (837)
+.++++|+.|+.|++|..... ..+..+.+|.+.|++++| ++++|++|+.||+|++||+.
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTL-------------------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSC-------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCEEEEEeCCCeEEEEeCCCC-------------------eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 478899999999999965322 245678899999999999 78899999999999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce--eEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~--~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+.++... ...+.+|...|.+++|. + .++++++.||
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg 276 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D-KYIVSASGDR 276 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T-TEEEEEETTS
T ss_pred CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--C-CEEEEEeCCC
Confidence 9999999999999999999974 59999999999999999876542 26778899999999994 3 4777999999
Q ss_pred cEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEE
Q 003236 664 EIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasg 742 (837)
.|++||+++++++..+.. ...+.++.+. +..+++++.|+.|++||+++++++..+.+|...|.+++| ++.+|+++
T Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred eEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 999999999999988874 5678888884 679999999999999999999999999999999999999 78899999
Q ss_pred e-CCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEE
Q 003236 743 S-DELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL 815 (837)
Q Consensus 743 s-Dg~I~IwDl~s~~~------~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sl 815 (837)
+ ||.|+|||+.++.. ..++..+..|...|.+++| ++.+|++++.|+.|++||+.+...........++.++
T Consensus 353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~ 430 (435)
T 1p22_A 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTY 430 (435)
T ss_dssp ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------------------
T ss_pred eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccce
Confidence 8 99999999976531 1278888899999999999 6788999999999999999887766444444555555
Q ss_pred EEe
Q 003236 816 AAS 818 (837)
Q Consensus 816 a~s 818 (837)
.|.
T Consensus 431 ~~~ 433 (435)
T 1p22_A 431 TYI 433 (435)
T ss_dssp ---
T ss_pred eee
Confidence 554
No 100
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=8e-30 Score=282.38 Aligned_cols=274 Identities=14% Similarity=0.155 Sum_probs=216.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEc
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDT 626 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl 626 (837)
+..+..|.+.|+|++|+|||++||+|+.|+ ++|||+.+++....... ..+..++|.++++.+ ++++.|++|+|||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 445678999999999999999999998765 78999998877655432 258888999988877 56778899999999
Q ss_pred CCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEE--EEcC
Q 003236 627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILA--AAIE 703 (837)
Q Consensus 627 ~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~sl~~sp~g~~lla--gs~d 703 (837)
.+++. +..+. |...|.+++|+++. ++ ++. |+.|++||+.++ +.+..+.. ....+++++ ..+++ ++.+
T Consensus 89 ~~~~~-~~~~~-~~~~v~~v~~~~~~--~~-~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~~ 158 (355)
T 3vu4_A 89 VKKQD-VSRIK-VDAPVKDLFLSREF--IV-VSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFNL 158 (355)
T ss_dssp TTTEE-EEEEE-CSSCEEEEEECSSE--EE-EEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSCT
T ss_pred CCCcE-EEEEE-CCCceEEEEEcCCE--EE-EEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCcC
Confidence 98664 55554 67799999999762 33 333 789999999988 76666655 444566666 56666 4678
Q ss_pred CeEEEEECCCCe----------------EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCe-EEEEEcCCCCCceeEEEee
Q 003236 704 NYISILDVETQV----------------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 704 g~I~iwDl~s~~----------------~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~-I~IwDl~s~~~~~~i~~~~ 765 (837)
|.|++||++++. ++..+.+|...|++++|+|++.+|++++ |++ |+|||++++ .++..+.
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~ 235 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFR 235 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEE
Confidence 999999999865 2678889999999999999999999999 998 999999988 6778887
Q ss_pred -c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE---Ee--------------------c-cCCCCeeEEEEeC
Q 003236 766 -C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TL--------------------S-AHDKLVSSLAAST 819 (837)
Q Consensus 766 -~-~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~---~l--------------------~-~h~~~V~sla~sp 819 (837)
+ |...|.+++|+|++.+|++++.|+.|+|||+...... .+ . .+......++|++
T Consensus 236 ~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 315 (355)
T 3vu4_A 236 RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWIS 315 (355)
T ss_dssp CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESS
T ss_pred cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeC
Confidence 4 8999999999999999999999999999999765321 10 0 1122347799999
Q ss_pred CCCEEEEEECCCcEEEeC
Q 003236 820 VNGMVASASHDKCVKIWK 837 (837)
Q Consensus 820 dg~~LaSgs~DG~I~IWd 837 (837)
++++|++++.||.+++|+
T Consensus 316 d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 316 ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 999999999999999985
No 101
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.3e-31 Score=298.22 Aligned_cols=264 Identities=15% Similarity=0.208 Sum_probs=218.7
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-ccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC---CCce-eEE
Q 003236 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDYS-LRT 635 (837)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~---~~~~-~~~ 635 (837)
.|+|++..+++++ +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +... ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3677787777664 487 556788888 89999999999999 999999999999999999876 3311 122
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC---CCeeeeEEe-------------cCCCeeEEE--EecCCCEE
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK-------------CQSGATQMR--FQPRLGRI 697 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~---t~~~i~~~~-------------~~~~i~sl~--~sp~g~~l 697 (837)
...|...|.+++|+|++. +|++++.||.|++||+. +++.+..+. ....+.++. +++++..+
T Consensus 107 ~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TYDCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EEECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred eccCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 225999999999999866 66799999999999995 554444332 234466666 55788999
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcC--CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-cCCCceEE
Q 003236 698 LAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHS 773 (837)
Q Consensus 698 lags~dg~I~iwDl~s~~~~~~l~~--h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~~~~~I~s 773 (837)
++++.|+.|++||+++++++..+.. |...|++++|+|++.+|++++ |+.|++||++++ .++..+. .+...|.+
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITH 262 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEE
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEE
Confidence 9999999999999999999999988 899999999999999999999 999999999986 7777765 67778999
Q ss_pred EEEeC----CCCEEEEEEcCCeEEEEECCCCcEE-Eecc--------------------------CCCCeeEEEEeCCCC
Q 003236 774 CVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVNG 822 (837)
Q Consensus 774 v~fsp----dg~~L~sgs~dg~I~IwDl~s~~~~-~l~~--------------------------h~~~V~sla~spdg~ 822 (837)
++|+| ++.+|++++.|+.|++||+.+++.+ .+.+ |...|++++|+ +++
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 96654 5779999999999999999988866 3322 66679999999 789
Q ss_pred EEEEEECCCcEEEeC
Q 003236 823 MVASASHDKCVKIWK 837 (837)
Q Consensus 823 ~LaSgs~DG~I~IWd 837 (837)
+|++|+.||.|++||
T Consensus 342 ~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 342 ILLTDEATSSIVMFS 356 (437)
T ss_dssp EEEEEGGGTEEEEEE
T ss_pred EEEecCCCCeEEEEE
Confidence 999999999999997
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=6.4e-30 Score=289.04 Aligned_cols=278 Identities=14% Similarity=0.262 Sum_probs=223.0
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCC------------CCeEEEEEcCCC--CEEE
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST------------SKVESCHFSPDG--KLLA 571 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~------------~~V~sl~fSpdg--~~La 571 (837)
..++++|+.|+.|++|......... ......+..+..+.+|. +.|++++|+|++ .+|+
T Consensus 40 g~~la~g~~dg~v~iw~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~ 111 (447)
T 3dw8_B 40 GELLATGDKGGRVVIFQQEQENKIQ--------SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFL 111 (447)
T ss_dssp SSEEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEE
T ss_pred CCEEEEEcCCCeEEEEEecCCCCCC--------cccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEE
Confidence 3789999999999999766542110 11123445677888998 899999999998 7999
Q ss_pred EEECCCcEEEEeCCCCeEE---------------------------------------EE-eccCCCCeEEEEEcCCCCE
Q 003236 572 TGGHDKKAVLWCTESFTVK---------------------------------------ST-LEEHTQWITDVRFSPSLSR 611 (837)
Q Consensus 572 sgs~Dg~I~VWd~~t~~~~---------------------------------------~~-l~~h~~~I~~l~fspdg~~ 611 (837)
+++.|++|+|||+.++... .. ..+|...|++++|+|++++
T Consensus 112 s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 191 (447)
T 3dw8_B 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYET 191 (447)
T ss_dssp EEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSE
T ss_pred EeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCE
Confidence 9999999999998764432 12 3689999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCceeE-------EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eeEEe
Q 003236 612 LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFK 680 (837)
Q Consensus 612 Latgs~Dg~I~IWDl~~~~~~~~-------~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~----i~~~~ 680 (837)
|++| .|+.|+|||+.+....+. .+.+|...|.+++|+|++..+|++++.||.|++||+++++. +..+.
T Consensus 192 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 270 (447)
T 3dw8_B 192 YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE 270 (447)
T ss_dssp EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC
T ss_pred EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec
Confidence 9998 899999999985444344 35689999999999999856888999999999999999886 56666
Q ss_pred cCC-------------CeeEEEEecCCCEEEEEEcCCeEEEEECCC-CeEEEEEcCCCCC---------------EEEEE
Q 003236 681 CQS-------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQ---------------VHSVC 731 (837)
Q Consensus 681 ~~~-------------~i~sl~~sp~g~~llags~dg~I~iwDl~s-~~~~~~l~~h~~~---------------V~sl~ 731 (837)
.+. .|.+++|+|++.+|++++. +.|++||+++ ++++..+.+|... +..++
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~ 349 (447)
T 3dw8_B 271 EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECC 349 (447)
T ss_dssp CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEE
T ss_pred cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEE
Confidence 543 7999999999999999998 9999999997 7888888877532 33499
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee---------------------------------cCCCceEEEEEe
Q 003236 732 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS---------------------------------CTGNKFHSCVFH 777 (837)
Q Consensus 732 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~---------------------------------~~~~~I~sv~fs 777 (837)
|+|++.+|++++ |+.|+|||+.++. .+. +. .....|..++|+
T Consensus 350 ~s~~~~~l~s~s~dg~v~iwd~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 425 (447)
T 3dw8_B 350 WNGSDSVVMTGSYNNFFRMFDRNTKR---DIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWH 425 (447)
T ss_dssp ECTTSSEEEEECSTTEEEEEETTTCC---EEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEEC
T ss_pred ECCCCCEEEEeccCCEEEEEEcCCCc---cee-eeecccccccccccCCccccccCCcccccccccccccCCceeEEEEC
Confidence 999999999999 9999999998873 221 11 223568899999
Q ss_pred CCCCEEEEEEcCCeEEEEECC
Q 003236 778 PTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 778 pdg~~L~sgs~dg~I~IwDl~ 798 (837)
|++..|++++.++ +++|..+
T Consensus 426 p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 426 PKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SSSSEEEEECSSC-EEEEECC
T ss_pred CCCCEEEEEecce-eeeeccc
Confidence 9999988887775 7788643
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-29 Score=286.46 Aligned_cols=272 Identities=16% Similarity=0.180 Sum_probs=221.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe---EEEEecc-------------------------------------
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE------------------------------------- 595 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~---~~~~l~~------------------------------------- 595 (837)
.+|.|++|++||++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468999999999977766 47899999999888 5555442
Q ss_pred -----------------CCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcC--CCCceeEEee--ccccceEEEEEcCCCC
Q 003236 596 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE 653 (837)
Q Consensus 596 -----------------h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~--~~~~~~~~~~--~h~~~V~sl~fspdg~ 653 (837)
|.+.|++++|+|++++| ++++.||.|+|||+. ++.. +..+. .|...|.+++|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCC
Confidence 33479999999999996 899999999999998 6543 55554 5678999999999976
Q ss_pred eEEEEEeCCCcEEEEECCCCeeee----EE-ecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCCCeEEEE-EcCCC
Q 003236 654 DLLCSCDNNSEIRYWSINNGSCAG----VF-KCQSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK 724 (837)
Q Consensus 654 ~llasgs~Dg~I~vwDl~t~~~i~----~~-~~~~~i~sl~~sp~---g~~llags~dg~I~iwDl~s~~~~~~-l~~h~ 724 (837)
+|++++.+|.|++|++.++.... .+ .+...|.+++|+|+ +.+|++++.|+.|++||++++..+.. +.+|.
T Consensus 163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 56688889999999998877553 33 34678999999999 88999999999999999999887777 55899
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------------------------cCCCceEEEEEeC
Q 003236 725 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP 778 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------------------------~~~~~I~sv~fsp 778 (837)
..|.+++|+ ++.+|++++ |+.|+|||+.++ .++..+. .....|..++|+|
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 999999999 999999999 999999999987 4454443 2345789999999
Q ss_pred CCCEEEEEE-cCCeEEEEEC--CCC---cEE-EeccCCCCeeEEEEeCCCCEEEEEEC-------CCcEEEe
Q 003236 779 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW 836 (837)
Q Consensus 779 dg~~L~sgs-~dg~I~IwDl--~s~---~~~-~l~~h~~~V~sla~spdg~~LaSgs~-------DG~I~IW 836 (837)
++++|++++ .++.|+|||+ ..+ +.+ .+..| ..|.+++|+|++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence 999999999 8999999999 554 344 45566 889999999954 4444432 4457777
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=3.9e-30 Score=288.52 Aligned_cols=277 Identities=16% Similarity=0.197 Sum_probs=225.9
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~ 585 (837)
.++++|+.|+.|.+|...... .....+..+.+|.+.|++++|+| ++.+||+|+.||+|+|||+.
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~---------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTG---------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP 112 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCE---------------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred EEEEEEcCCCEEEEEECccCC---------------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence 355678899999999663321 11122445779999999999999 99999999999999999999
Q ss_pred CC-------eEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEe--eccccceEEEEEcCCCCeE
Q 003236 586 SF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 586 t~-------~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~--~~h~~~V~sl~fspdg~~l 655 (837)
++ +.+..+.+|...|.+++|+|++ .+|++++.|+.|+|||+.+++ .+..+ ..|...|.+++|+|++. +
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGA-L 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSS-C
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCC-E
Confidence 87 5678888999999999999997 699999999999999999865 46666 78999999999999876 5
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEE-ecCC--CeeEEEEecCCCEEEEE---EcCCeEEEEECCCCeE-EEEE-cCCCCCE
Q 003236 656 LCSCDNNSEIRYWSINNGSCAGVF-KCQS--GATQMRFQPRLGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQV 727 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t~~~i~~~-~~~~--~i~sl~~sp~g~~llag---s~dg~I~iwDl~s~~~-~~~l-~~h~~~V 727 (837)
|++++.|+.|++||+++++.+..+ ..+. .+.++.|+|++.+++++ +.|+.|++||+++... +... ..|...|
T Consensus 191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 568889999999999999998887 3333 37999999998888888 5899999999998643 2222 2477889
Q ss_pred EEEEEcCCCCEEEE-Ee-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 728 HSVCWNTSGEYLAS-VS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 728 ~sl~~spdg~~Las-gs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
.+++|+|++.+|++ ++ |+.|++||+.++.. ...+..+. +...+.+++|+|++.++++ .++.+++|++.++.+.
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 99999999999865 54 99999999998753 22333333 5688999999999987654 5669999999887654
No 105
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.1e-29 Score=286.22 Aligned_cols=245 Identities=18% Similarity=0.320 Sum_probs=210.4
Q ss_pred EEeccCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCC---------CceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 591 STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 591 ~~l~~h~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~---------~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
.....|.+.|++++|+|+ +.+|++++.||.|+|||+.+. ...+..+.+|...|.+++|+|++..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 344579999999999997 789999999999999999862 3346788899999999999999887888999
Q ss_pred CCCcEEEEECCCCee-------eeEE-ecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCC---eEEEEEcCCCCCEE
Q 003236 661 NNSEIRYWSINNGSC-------AGVF-KCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH 728 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~-------i~~~-~~~~~i~sl~~sp-~g~~llags~dg~I~iwDl~s~---~~~~~l~~h~~~V~ 728 (837)
.||.|++||+..+.. ...+ .+...|.+++|+| ++..|++++.|+.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 2233 3456799999999 6778889999999999999987 57777888999999
Q ss_pred EEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCC------
Q 003236 729 SVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE------ 799 (837)
Q Consensus 729 sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s------ 799 (837)
+++|+|++. +|++++ |+.|+|||+++.. ..+..+..|...|.+++|+|++. .|++++.|+.|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 999999987 677888 9999999999743 46777888999999999999995 588899999999999977
Q ss_pred --------CcEE-EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 003236 800 --------NKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK 837 (837)
Q Consensus 800 --------~~~~-~l~~h~~~V~sla~spdg~-~LaSgs~DG~I~IWd 837 (837)
...+ ...+|...|++++|+|++. +|++++.||.|+||+
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 2333 6678999999999999999 999999999999996
No 106
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-30 Score=286.13 Aligned_cols=265 Identities=9% Similarity=0.026 Sum_probs=212.5
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---------CCCce
Q 003236 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS 632 (837)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---------~~~~~ 632 (837)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999998888776 567888999988 9999999999999766 33322
Q ss_pred eEEeeccccceEEEEEcC--CCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 633 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
.....+|...|.+++|+| ++. ++++++.||.|++||+++++++..... ...+.+++|+|++.++++|+.|+.|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 233346778999999999 765 677999999999999999998766533 446999999999999999999999999
Q ss_pred EECCCCeEE-EEEcC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCce--EEEEEeCCCCEEE
Q 003236 709 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL 784 (837)
Q Consensus 709 wDl~s~~~~-~~l~~-h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I--~sv~fspdg~~L~ 784 (837)
||+++++.+ ..+.. |...|++++|+|++.+|++++|+.|+|||+++......+..+..+...+ .+++|+|++.+|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 999999877 77887 9999999999999999999997799999999875433333322233333 4699999999999
Q ss_pred EEEc-CCeEEEEECCCCcEE-EeccCCCCeeEEEEeC---CCCEEEEEECCCcEEEe
Q 003236 785 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW 836 (837)
Q Consensus 785 sgs~-dg~I~IwDl~s~~~~-~l~~h~~~V~sla~sp---dg~~LaSgs~DG~I~IW 836 (837)
+++. |+.|+||++...... .. .++..++|.+ +...|++++.||.+.++
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 9998 999999998665432 22 5677788887 77888888888888775
No 107
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=3.4e-29 Score=278.66 Aligned_cols=277 Identities=12% Similarity=0.128 Sum_probs=210.4
Q ss_pred CCeEEcccCCC-------ceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEE----
Q 003236 506 DRFVDDGSLDD-------NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG---- 574 (837)
Q Consensus 506 ~~~v~~Gs~D~-------~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs---- 574 (837)
..++++|+.|. .|++|......... .. .........+.+|...|.+++++ +..+++|.
T Consensus 26 g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~--~~-------~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~ 94 (365)
T 4h5i_A 26 DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE--KE-------QFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENS 94 (365)
T ss_dssp TEEEEEEECCSSSSSCCEEEEEEEECTTSSSH--HH-------HEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCH
T ss_pred CcEEEEECCCccccCCCCEEEEEEEcCCCcce--ee-------eeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCc
Confidence 36788876543 48888665432110 00 01112234578899999998775 55777664
Q ss_pred -------CCCcEEEEeCCCCeE----EEEe-----ccCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCCceeEEe
Q 003236 575 -------HDKKAVLWCTESFTV----KSTL-----EEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 575 -------~Dg~I~VWd~~t~~~----~~~l-----~~h~~~I~~l~fspdg~~Latgs--~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.|+.|++|++.+... .... ..+...+.+++|+|||++|++++ .|++|+|||+.+... +..+
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-~~~~ 173 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-KFEI 173 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-EEEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-EEEe
Confidence 467899998765321 1111 23456799999999999987554 689999999998664 4444
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEcCC----eEEEE
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN----YISIL 709 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~llags~dg----~I~iw 709 (837)
.|...|.+++|+|++. ++++++ ++.+++|+..++..+.... +...+.+++|+|++..+++++.++ .+.+|
T Consensus 174 -~~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 174 -ETRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp -ECSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred -CCCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 4778899999999987 555776 5567788887777665433 244589999999999999999887 68889
Q ss_pred ECCCCeE----EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEE
Q 003236 710 DVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 710 Dl~s~~~----~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~fspdg~~L 783 (837)
|+..... ...+.+|...|++++|+|||++|++|+ |+.|+|||+.++ +++..+ .+|...|++++|+||+++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~~l 327 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDSTYV 327 (365)
T ss_dssp EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCCEE
Confidence 9876643 456778999999999999999999999 999999999987 777764 6899999999999999999
Q ss_pred EEEEcCCeEEEEECCCC
Q 003236 784 LVIGCYETLELWNMTEN 800 (837)
Q Consensus 784 ~sgs~dg~I~IwDl~s~ 800 (837)
++++.|++|+|||+...
T Consensus 328 aS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 328 ASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSEEEEEECCTT
T ss_pred EEEeCCCeEEEEEcCCC
Confidence 99999999999999653
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=8.4e-28 Score=267.26 Aligned_cols=275 Identities=14% Similarity=0.153 Sum_probs=226.6
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEeCC
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~ 585 (837)
.++++++.|+.|++|..... ..+..+..|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 46788899999999965332 2344555665 48999999999976 667789999999999
Q ss_pred CCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc
Q 003236 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664 (837)
Q Consensus 586 t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~ 664 (837)
+++.+..+..+. .|.+++|+|++++|++++ .|+.|++||+.+++. +..+.. ...+.+++|+|++..++++++.++.
T Consensus 63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~ 139 (391)
T 1l0q_A 63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVKT-GKSPLGLALSPDGKKLYVTNNGDKT 139 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEEC-SSSEEEEEECTTSSEEEEEETTTTE
T ss_pred CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEeC-CCCcceEEECCCCCEEEEEeCCCCE
Confidence 999998887655 899999999999886554 679999999998653 445543 4578999999999888789999999
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEE-EEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ll-ags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
|++||+.+++.+..+..+..+.+++|+|+++.++ +++.++.|++||+++++.+..+. +...+.+++|+|++++|++++
T Consensus 140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 218 (391)
T 1l0q_A 140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTN 218 (391)
T ss_dssp EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEe
Confidence 9999999999999998888899999999999885 55567999999999998887776 566899999999999888775
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEECCCCcEE-EeccCC
Q 003236 744 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL-TLSAHD 809 (837)
Q Consensus 744 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~-sgs~dg~I~IwDl~s~~~~-~l~~h~ 809 (837)
++.|++||+.++ ..+..+..+ ..+.+++|+|++++|+ +++.|+.|++||+.+++.+ .+..|.
T Consensus 219 ~~~~~~~v~~~d~~~~---~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTN---KITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp ECSSCCEEEEEETTTT---EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred cCcCCCcEEEEECCCC---eEEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 689999999887 566666654 4578999999999885 5567889999999999877 444443
No 109
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=3.6e-28 Score=270.19 Aligned_cols=262 Identities=11% Similarity=0.122 Sum_probs=223.1
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~L-atgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence 467888999999999999999999988775 58999999999977 6677899999999988664 55555444 89999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE-EEEEcCCeEEEEECCCCeEEEEEcCCCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI-LAAAIENYISILDVETQVCRLKLQGHKN 725 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~l-lags~dg~I~iwDl~s~~~~~~l~~h~~ 725 (837)
+|+|++..++++++.++.|++||+.+++.+..+..+..+.+++|+|+++.+ ++++.++.|++||+++++.+..+..+ .
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999988888888899999999999999999888899999999999988 45666899999999999988888765 5
Q ss_pred CEEEEEEcCCCCEEE-EEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE---cCCeEEEEECCCC
Q 003236 726 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN 800 (837)
Q Consensus 726 ~V~sl~~spdg~~La-sgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs---~dg~I~IwDl~s~ 800 (837)
.+.+++|+|++++|+ ++. ++.|++||++++ .++..+. +...+.+++|+|++.+|++++ .++.|++||+.++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 679999999999885 455 889999999887 5555554 456789999999999999998 5889999999999
Q ss_pred cEEEeccCCCCeeEEEEeCCCCEE-EEEECCCcEEEeC
Q 003236 801 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK 837 (837)
Q Consensus 801 ~~~~l~~h~~~V~sla~spdg~~L-aSgs~DG~I~IWd 837 (837)
+.+........+.+++|+|++++| ++++.|+.|++||
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence 887444444568999999999877 6778899999996
No 110
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-30 Score=304.26 Aligned_cols=256 Identities=9% Similarity=0.051 Sum_probs=199.0
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeE----EEEeccCCCCeEEEEEcCC------CCEEEEEeCCCeEEEEEcCCCCc--
Q 003236 564 SPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY-- 631 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~----~~~l~~h~~~I~~l~fspd------g~~Latgs~Dg~I~IWDl~~~~~-- 631 (837)
+|++++|++++.|++|+|||+.+++. ..++..|.+.|.+|+|+|+ +.+||+++.||+|+|||+.++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 34444555567889999999977653 2446678899999999996 57999999999999999986542
Q ss_pred --------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeeEEe-cCCCeeEE--EEecCC-CEEE
Q 003236 632 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK-CQSGATQM--RFQPRL-GRIL 698 (837)
Q Consensus 632 --------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-~i~~~~-~~~~i~sl--~~sp~g-~~ll 698 (837)
+...+.+|...|++++|++++ .|++|+.||+|++||++++. +...+. +...|.++ .|++++ ..|+
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 134678899999999999863 68899999999999999764 334444 46779998 567777 7899
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcCCCC--CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 699 AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
+++.|++|+|||+++++++..+.+|.. .|.+++|+|++..|++++ |++|++||++++ .++..+.+|...|.+++
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIG 404 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEE
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEE
Confidence 999999999999998876666666653 588999999999999888 889999999987 56667788999999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEEEec-----cCCCCeeEEEEeCCCCEE
Q 003236 776 FHPTFPSLLVIGCYETLELWNMTENKTLTLS-----AHDKLVSSLAASTVNGMV 824 (837)
Q Consensus 776 fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~-----~h~~~V~sla~spdg~~L 824 (837)
|+|++++|++|+.|++|++||+..+...... .+...|++++|+|+++.+
T Consensus 405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999999999999999999998664221111 112257899999999855
No 111
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=7.1e-29 Score=269.74 Aligned_cols=263 Identities=13% Similarity=0.122 Sum_probs=222.6
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT 584 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~ 584 (837)
..++++|+.|+.|++|..... ........+.+|...|++++|+|+++ +|++|+.||.|++||+
T Consensus 23 ~~~l~~~~~d~~v~iw~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 23 KSLLLITSWDGSLTVYKFDIQ----------------AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp GTEEEEEETTSEEEEEEEETT----------------TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred CCEEEEEcCCCeEEEEEeCCC----------------CccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 368899999999999965432 11122344558999999999999999 9999999999999999
Q ss_pred -CCCeEEEEecc--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------CCceeEEeeccccceEEEEEcCCC
Q 003236 585 -ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 585 -~t~~~~~~l~~--h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~---------~~~~~~~~~~h~~~V~sl~fspdg 652 (837)
.+++. ..+.. |...|.+++|+| +.+|++++.|+.|++||+.+ .. ++..+. |...|.+++|++++
T Consensus 87 ~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 87 IGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCCCEEEEEECSSE
T ss_pred ccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCCceEEEEecCCc
Confidence 87765 67778 999999999999 99999999999999999986 43 244444 88999999999875
Q ss_pred CeEEEEEeCCCcEEEEECCC-Ceee---eEEecCCCeeEEEEec-CCCEEEEEEcCCeEEEEECCCC------eEEEEEc
Q 003236 653 EDLLCSCDNNSEIRYWSINN-GSCA---GVFKCQSGATQMRFQP-RLGRILAAAIENYISILDVETQ------VCRLKLQ 721 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t-~~~i---~~~~~~~~i~sl~~sp-~g~~llags~dg~I~iwDl~s~------~~~~~l~ 721 (837)
+++++.|+.|++||+++ +... ....+...+.+++|+| ++..+++++.|+.|++||++.. .....+.
T Consensus 163 ---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 163 ---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp ---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred ---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 67888999999999998 5432 2223466899999999 9999999999999999999876 7777788
Q ss_pred CCCC---------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEcCC
Q 003236 722 GHKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 722 ~h~~---------~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~dg 790 (837)
.|.. .|.+++|+|++.+|++++ ||.|++||+.++ ..+..+..| ...|.+++ |++.+|++++.|+
T Consensus 240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 7765 999999999999999998 999999999987 778888888 99999999 9999999999999
Q ss_pred e-EEEEE
Q 003236 791 T-LELWN 796 (837)
Q Consensus 791 ~-I~IwD 796 (837)
. .+.|.
T Consensus 315 ~~~~~~~ 321 (342)
T 1yfq_A 315 TFKTNAA 321 (342)
T ss_dssp HHHHCSS
T ss_pred ccccccc
Confidence 8 44444
No 112
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6e-30 Score=294.11 Aligned_cols=262 Identities=9% Similarity=0.078 Sum_probs=212.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~ 632 (837)
.-...|.+|+|+|||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.....
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-- 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-- 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence 4456799999999999999999999999 755554 447999999999999998 45555555543211
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-----CeeEEEEecCCCEEEEEEcCCeEE
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-----GATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-----~i~sl~~sp~g~~llags~dg~I~ 707 (837)
.. -..|...|.+++|+|+|. .+++++.||.|++||... ++..+.++. .+.+++|+|+|.+|++|+.||.|+
T Consensus 79 ~~-~~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 79 LL-NSQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SS-TTSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred Ee-ecCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 11 225688999999999987 566889999999999654 555555322 499999999999999999999999
Q ss_pred EEECCCCe-------EEEEE----cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-ecCCCceEEEE
Q 003236 708 ILDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCV 775 (837)
Q Consensus 708 iwDl~s~~-------~~~~l----~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~ 775 (837)
+||+.++. .+.++ .+|..+|.+++|+||| +++++.|+.|++||+..+.......++ ..|...|.+++
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 99999874 36666 6688899999999999 544444999999999887432234555 36778999999
Q ss_pred EeCCCCEEEEEEcCCeEEEEECCCCcEEE-eccCCCCeeEEEE--eCCCCEEEEEECCCcEEEeC
Q 003236 776 FHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 776 fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l~~h~~~V~sla~--spdg~~LaSgs~DG~I~IWd 837 (837)
|+ +..|++++ ++.|++||+.+++... ..+|...|..++| +|++..|++++.||+ ++|.
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 99 57788776 6999999999998854 4489999999999 999999999999999 9984
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=4.5e-29 Score=283.43 Aligned_cols=252 Identities=19% Similarity=0.367 Sum_probs=218.8
Q ss_pred EEecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCC----------CeEEEEeccCCCCeEEEEEcCCCC-EEEEEe
Q 003236 549 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATSS 616 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t----------~~~~~~l~~h~~~I~~l~fspdg~-~Latgs 616 (837)
.....|.+.|++++|+|+ +.+||+++.||.|+|||+.+ ...+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445689999999999997 77999999999999999986 677788899999999999999988 999999
Q ss_pred CCCeEEEEEcCCCCc------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---eeeeEEe-cCCCee
Q 003236 617 ADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK-CQSGAT 686 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~~------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---~~i~~~~-~~~~i~ 686 (837)
.||.|++||+.+... ....+.+|...|.+++|+|++..+|++++.|+.|++||++++ +.+..+. +...|.
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987432 135667899999999999977789999999999999999987 4555553 467899
Q ss_pred EEEEecCCC-EEEEEEcCCeEEEEECCC-CeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCC-----
Q 003236 687 QMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----- 757 (837)
Q Consensus 687 sl~~sp~g~-~llags~dg~I~iwDl~s-~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~----- 757 (837)
+++|+|++. .+++++.|+.|++||+++ ..++..+..|...|.+++|+|++. +|++++ |+.|+|||+.....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 588999999999999998 567888889999999999999985 677777 99999999987321
Q ss_pred ------ceeEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCC
Q 003236 758 ------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 758 ------~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s~ 800 (837)
...+..+..|...|.+++|+|+++ .|++++.|+.|+||++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 256777888899999999999999 8999999999999998654
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.9e-29 Score=305.79 Aligned_cols=251 Identities=20% Similarity=0.312 Sum_probs=214.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC--CCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV 623 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~I 623 (837)
+.++.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|.+.|++++|+++ +.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999998 56778889999999999999988 999999999999999
Q ss_pred EEcCCCCc-eeEEeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeee---eEEecCCCeeEEEEec-----
Q 003236 624 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCA---GVFKCQSGATQMRFQP----- 692 (837)
Q Consensus 624 WDl~~~~~-~~~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i---~~~~~~~~i~sl~~sp----- 692 (837)
||+.++.. .+..+.+|...|.+++|+|+ +. ++++|+.||.|++||++++... ....+...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99998652 46777889999999999998 55 6779999999999999887332 2233467899999999
Q ss_pred --------CCCEEEEEEcCCeEEEEECCCC----eEEEEEcCCCCCEEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCC
Q 003236 693 --------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGS 756 (837)
Q Consensus 693 --------~g~~llags~dg~I~iwDl~s~----~~~~~l~~h~~~V~sl~~spd---g~~Lasgs-Dg~I~IwDl~s~~ 756 (837)
++..+++++.||.|++||++++ .....+.+|...|++++|+|+ +.+|++++ ||.|++||++++.
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 5889999999999999999876 667788899999999999999 89999999 9999999998863
Q ss_pred Cc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 757 KG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 757 ~~--~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
.. ..+.....+...|.+++|+|++.+|++++.||.|++||+..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 21 12333445778899999999999999999999999999874
No 115
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=5.1e-28 Score=260.98 Aligned_cols=280 Identities=19% Similarity=0.220 Sum_probs=205.7
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--CCCEEEEEECCCcEEEEe
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC 583 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp--dg~~Lasgs~Dg~I~VWd 583 (837)
..++++|+.|+.|++|...... ..+.....+.+|...|++++|+| |+.+|++|+.||.|+|||
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 23 GRHVATCSSDQHIKVFKLDKDT---------------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp SSEEEEEETTSEEEEEEECSSS---------------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred CCEEEEeeCCCeEEEEECCCCC---------------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 3688999999999999665321 12345677889999999999999 699999999999999999
Q ss_pred CCCC---------eEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCceeE------------Eeeccc
Q 003236 584 TESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLR------------TFTGHS 640 (837)
Q Consensus 584 ~~t~---------~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~~~~~------------~~~~h~ 640 (837)
+.++ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+.+...... ....|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence 9876 668888899999999999999 99999999999999999987653111 112678
Q ss_pred cceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCee--eeEEe-cCCCeeEEEEecCC----CEEEEEEcCCeEEEEEC
Q 003236 641 TTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVFK-CQSGATQMRFQPRL----GRILAAAIENYISILDV 711 (837)
Q Consensus 641 ~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~--i~~~~-~~~~i~sl~~sp~g----~~llags~dg~I~iwDl 711 (837)
..+.+++|+|+ ...++++++.++.+.+|+...++. +..+. +...|.+++|+|++ .+|++++.|+.|++||+
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence 89999999997 345777888999998888887765 33333 35679999999998 78999999999999999
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+.+........+...+....+.+....++.+. ...+.+|+... ...+..+..|...|++++|+|++.+|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ---VELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EECC---------------------------------------CCSEE---EEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred CCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc---ccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 98765555544444555555555555555544 22344444333 36788888999999999999999999999
Q ss_pred EcCCeEEEEECCCCcEE
Q 003236 787 GCYETLELWNMTENKTL 803 (837)
Q Consensus 787 s~dg~I~IwDl~s~~~~ 803 (837)
+.|+.|+|||+.+++.+
T Consensus 325 ~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 325 GDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ETTSCEEEEEECTTSCE
T ss_pred cCCCcEEEEecCcCcch
Confidence 99999999999887544
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=260.99 Aligned_cols=286 Identities=16% Similarity=0.229 Sum_probs=229.7
Q ss_pred CCceEEEEecCCCCCcccCCCccccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeE
Q 003236 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (837)
Q Consensus 480 ~~~s~~~~~~~~~~~~~~~~~~l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~ 559 (837)
.....+.|+++.. ...++++|+.|+.|++|...... ......+.+|.+.|+
T Consensus 40 ~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~h~~~v~ 90 (368)
T 3mmy_A 40 DSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEVQDSG-----------------QTIPKAQQMHTGPVL 90 (368)
T ss_dssp SCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEECTTS-----------------CEEEEEEEECSSCEE
T ss_pred CceEEEEEcCCCC------------CceEEEEECCCCcEEEEEcCCCC-----------------ceeEEEeccccCCEE
Confidence 4566777766531 13688999999999999765421 112356778999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEE--cCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~f--spdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
+++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++| ++++.+|++++.||.|++||+.+++. +..+.
T Consensus 91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~ 168 (368)
T 3mmy_A 91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQ 168 (368)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEE
T ss_pred EEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEe
Confidence 99999999999999999999999999988776 4569999999999 89999999999999999999998664 56666
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCE----EEEEEcCCeEEEEE
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGR----ILAAAIENYISILD 710 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~----llags~dg~I~iwD 710 (837)
.+. .+.++.+.++ .+++++.++.+++|+++......... ....+.++.+.++... +++++.|+.|++||
T Consensus 169 ~~~-~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 169 LPE-RCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp CSS-CEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred cCC-CceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 554 6777777743 55677779999999998765443322 2345667777665544 99999999999999
Q ss_pred CCCC---eEEEEEcCCCC------------CEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE
Q 003236 711 VETQ---VCRLKLQGHKN------------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC 774 (837)
Q Consensus 711 l~s~---~~~~~l~~h~~------------~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv 774 (837)
++.. ..+..+..|.. .|++++|+|++.+|++++ |+.|+|||+.++ .++..+..|...|.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKTSEQLDQPISAC 321 (368)
T ss_dssp SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSCEEEE
T ss_pred cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEEecCCCCCceEE
Confidence 9987 55667777765 799999999999999998 999999999987 7888899999999999
Q ss_pred EEeCCCCEEEEEEcCCeEE---EEECCCCcEE
Q 003236 775 VFHPTFPSLLVIGCYETLE---LWNMTENKTL 803 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~---IwDl~s~~~~ 803 (837)
+|+|++.+|++++.|+..+ +|+.+....+
T Consensus 322 ~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 322 CFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp EECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred EECCCCCeEEEEecccccccccccCCCcccee
Confidence 9999999999999988444 4444444444
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-29 Score=288.17 Aligned_cols=245 Identities=10% Similarity=0.109 Sum_probs=205.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~-----~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
.|...|.+|+|||||.+||+++.||.|+|||.+. ++..+. |.. .|.+++|+|||++||+|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5688899999999999999999999999999654 666677 665 49999999999999999999999999999
Q ss_pred CCCc------eeEEe----eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---eEEe--cCCCeeEEEEec
Q 003236 628 NPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK--CQSGATQMRFQP 692 (837)
Q Consensus 628 ~~~~------~~~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i---~~~~--~~~~i~sl~~sp 692 (837)
++.. .+..+ .+|...|.+++|+|++ +++++.|+.|++||+..+... ..+. +...|.+++|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 8653 35665 6778899999999997 557778999999999887742 3453 34679999999
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEE--cCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCC
Q 003236 693 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 693 ~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~--spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
+..+++++ ++.|++||+.++.......+|...|..++| +|++..|+++. ||+ ++|...
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence 57787776 699999999998875444479999999999 99999999999 889 999875
Q ss_pred ceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 770 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
.+.++|++..+++. |+++++|+...+... ...+...|.+++|+|||+++|+++.
T Consensus 297 ---~~~~spd~~l~a~~--d~~v~lW~~~g~~l~-~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---ELHVTADNIIAPYL--EKKFKKWSTIWNEFN-NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---SEEEECCCSSHHHH--HHHHHHTTTTTTSSS-SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred ---cEEECCCceEEEEc--CCEEEEEECCCCcee-eeccceEEEEEEECCCCCEEEEEEe
Confidence 15699999866664 899999998666533 3344677999999999999999874
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.4e-28 Score=276.21 Aligned_cols=261 Identities=15% Similarity=0.140 Sum_probs=177.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE-----EEeccCCCCeEEEEEcC--------CCCEEEEEeCC
Q 003236 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-----STLEEHTQWITDVRFSP--------SLSRLATSSAD 618 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~-----~~l~~h~~~I~~l~fsp--------dg~~Latgs~D 618 (837)
..|...+....+++++.+||+|+.|++|+|||+.++... ..+.+|.+.|++|+|+| |+++||+|+.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 345555666666778889999999999999999887654 34678999999999998 78999999999
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecCCCEE
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPRLGRI 697 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~g~~l 697 (837)
++|+|||+.+.. .+..+..|...|.+++|+|++..+|++++.|++|++||+++++......... ......+
T Consensus 166 ~tv~~Wd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~------- 237 (393)
T 4gq1_A 166 CTLIIWRLTDEG-PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLL------- 237 (393)
T ss_dssp SEEEEEEEETTE-EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSE-------
T ss_pred CeEEEEECCCCc-eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEE-------
Confidence 999999998765 4666777889999999999988889999999999999999887655443211 1110000
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEc-CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceE---
Q 003236 698 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH--- 772 (837)
Q Consensus 698 lags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~s-pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~--- 772 (837)
. ++...........+|...|.++.|+ +++..|++++ |+.+++||+..+.. ...+..+...+.
T Consensus 238 -s---------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~---~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 238 -T---------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND---YNEISDSTMKLGPKN 304 (393)
T ss_dssp -E---------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------C
T ss_pred -e---------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC---CceEeeecCccccEE
Confidence 1 1111111122334688899999987 7999999999 99999999987632 222222222222
Q ss_pred ---------------EEEEeC-CC-CEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 773 ---------------SCVFHP-TF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 773 ---------------sv~fsp-dg-~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
.+.|++ .+ .++++++.|+.|+|||+.+++.. ....|...|.+++|+|||++||++++||.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 223333 23 34566677999999999988766 667899999999999999999999988853
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-28 Score=297.72 Aligned_cols=248 Identities=21% Similarity=0.367 Sum_probs=211.1
Q ss_pred EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEeeccccceEEEEEcCCC-CeEEEEEeCCCcEEE
Q 003236 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRY 667 (837)
Q Consensus 590 ~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fspdg-~~llasgs~Dg~I~v 667 (837)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+..+. ..+..+.+|...|.+++|+++. ..++++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 34678999999999999999999999999999999998432 3467788999999999999872 347779999999999
Q ss_pred EECCCCe--eeeEEe-cCCCeeEEEEecC--CCEEEEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcC------
Q 003236 668 WSINNGS--CAGVFK-CQSGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT------ 734 (837)
Q Consensus 668 wDl~t~~--~i~~~~-~~~~i~sl~~sp~--g~~llags~dg~I~iwDl~s~--~~~~~l~~h~~~V~sl~~sp------ 734 (837)
||+.+++ .+..+. +...|.+++|+|+ +..+++++.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999986 444443 4678999999999 999999999999999999887 34556678999999999999
Q ss_pred -------CCCEEEEEe-CCeEEEEEcCCCCCc-eeEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEECCCCc-
Q 003236 735 -------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK- 801 (837)
Q Consensus 735 -------dg~~Lasgs-Dg~I~IwDl~s~~~~-~~i~~~~~~~~~I~sv~fspd---g~~L~sgs~dg~I~IwDl~s~~- 801 (837)
++.+|++++ ||.|++||++++... .++..+..|...|.+++|+|+ +.+|++++.|+.|++||+.++.
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 588899988 999999999876432 456678889999999999999 8999999999999999998873
Q ss_pred -----EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 802 -----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 802 -----~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
......|...|++++|+|++.+|++|+.||.|+|||
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 224456889999999999999999999999999996
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-26 Score=261.45 Aligned_cols=245 Identities=10% Similarity=0.047 Sum_probs=204.0
Q ss_pred ecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEeCC--CCeEEEEec--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 551 IPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~--t~~~~~~l~--~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
..+|.+.|++++|+|++++| ++|+.||.|+|||+. +++.+..+. .|...|++++|+|++++|++++.||.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 45788899999999999996 899999999999999 888887775 5778999999999999999999999999999
Q ss_pred cCCCCc---eeEEeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEE
Q 003236 626 TENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRIL 698 (837)
Q Consensus 626 l~~~~~---~~~~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g~~ll 698 (837)
+.+... ....+.+|...|.+++|+|+ +..+|++++.|+.|++||+.+++++..+. +...|.+++|+ ++.+|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 987653 23367889999999999998 23477799999999999999998887643 56789999999 999999
Q ss_pred EEEcCCeEEEEECCCCeEEEEEcC-------------------------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEE
Q 003236 699 AAAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVWS 751 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l~~-------------------------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwD 751 (837)
+++.|+.|++||+++++++..+.. ....|.+++|+|++.+|++++ |+.|+||+
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999999999999999988887763 345799999999999999887 88999999
Q ss_pred c--CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEECC
Q 003236 752 I--GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT 798 (837)
Q Consensus 752 l--~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-------dg~I~IwDl~ 798 (837)
+ ..+.....+..+..+ ..+.+++|+|++ .+++.+. +..|.+|.+.
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred eccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence 9 554444667777776 889999999964 4444433 3457777653
No 121
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=7.3e-26 Score=265.35 Aligned_cols=310 Identities=10% Similarity=0.061 Sum_probs=249.7
Q ss_pred CCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 505 ~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
...++++++.|++|.+|..... ..+.++..+.. +.+++|+|||++|++++.|++|.+||+
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~-------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred CCEEEEEEcCCCeEEEEECCCc-------------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEEC
Confidence 3467788888999999954322 23445553333 899999999999999999999999999
Q ss_pred --CCCeEEEEeccCCCCeEEEEEcC----CCCEEEEEeC-CCeEEEEEcCCCCceeEEeec----------cc-cceEEE
Q 003236 585 --ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSL 646 (837)
Q Consensus 585 --~t~~~~~~l~~h~~~I~~l~fsp----dg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~----------h~-~~V~sl 646 (837)
.+++++.++. +...+..++|+| |+++|++++. +++|.|||..+.+. +..+.. |. ..+.++
T Consensus 208 ~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i 285 (543)
T 1nir_A 208 WAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAI 285 (543)
T ss_dssp TSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEE
T ss_pred cCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEE
Confidence 8899988887 455689999999 9999999885 89999999988664 454443 22 378999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeee--EEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC-
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG- 722 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~--~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~- 722 (837)
.++|++..++++...++.|.+||+.+.+.+. .+.....+..+.|+|+++++++++. ++.|.+||+.+++++..+..
T Consensus 286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g 365 (543)
T 1nir_A 286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 365 (543)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccC
Confidence 9999999999999999999999998876554 4555566889999999998887765 78999999999999888874
Q ss_pred ---CCCCEEEEEEcCC-CCEEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEE-----
Q 003236 723 ---HKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIG----- 787 (837)
Q Consensus 723 ---h~~~V~sl~~spd-g~~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspdg~~L~sgs----- 787 (837)
|.+....+ ++|+ +.+++++. |++|.|||+.+... .+++.++..+...+..++++|++++|++++
T Consensus 366 ~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~ 444 (543)
T 1nir_A 366 KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD 444 (543)
T ss_dssp SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSS
T ss_pred CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCC
Confidence 55444443 4676 66677765 78999999987321 478999999988889999999999999987
Q ss_pred --cCCeEEEEECCCCcEE-Ee---------ccCCCCeeEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 003236 788 --CYETLELWNMTENKTL-TL---------SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK 837 (837)
Q Consensus 788 --~dg~I~IwDl~s~~~~-~l---------~~h~~~V~sla~spdg~~LaSgs-----~DG~I~IWd 837 (837)
.+++|.|||+.+++.. .. ..+...+..++|+|+|+.|+++. .|+.|.|||
T Consensus 445 ~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 445 ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred cccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 3679999999988765 32 35678899999999999888763 479999997
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=8.5e-27 Score=258.02 Aligned_cols=245 Identities=9% Similarity=0.029 Sum_probs=188.2
Q ss_pred EEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 581 VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
||++.+...+..+..|...|++++|+||+++|++|+.|+ ++|||+.+... ... .+...+..+++.++++.++++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMS--QEMRHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEE--EECSCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eee--eecCCeEEEEEcCCCCEEEEEEC
Confidence 566777777777889999999999999999999998775 78999986543 222 22235888899988887877888
Q ss_pred CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-eEEEEEcCCCCCEEEEEEcCCCCEE
Q 003236 661 NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL 739 (837)
Q Consensus 661 ~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-~~~~~l~~h~~~V~sl~~spdg~~L 739 (837)
.|+.|++||+.+++++..+.+...|.++.++++ .++ .+.++.|++||+.+. +.+..+.. ....+++++ .++
T Consensus 79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~-~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIV-VSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEE-EEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEE-EEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 899999999999999999998899999999876 333 346899999999987 55544443 444566777 666
Q ss_pred EEE--e-CCeEEEEEcCCCCCc------------e-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCe-EEEEECCCCcE
Q 003236 740 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT 802 (837)
Q Consensus 740 asg--s-Dg~I~IwDl~s~~~~------------~-~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~-I~IwDl~s~~~ 802 (837)
+++ + ||.|++||+.++... . ++..+..|...|.+++|+|++.+|++++.|++ |+|||+.+++.
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 664 4 999999999875310 1 26778899999999999999999999999998 99999999988
Q ss_pred E-Eec-c-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 803 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 803 ~-~l~-~-h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+ .+. + |...|++++|+|++++|++++.|++|+|||
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence 7 454 4 999999999999999999999999999996
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.5e-25 Score=250.72 Aligned_cols=277 Identities=10% Similarity=0.111 Sum_probs=226.2
Q ss_pred cccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 003236 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (837)
Q Consensus 502 l~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~V 581 (837)
+.+...++++++.|+.|.+|........ .......+.+|.+.|.+++|++++.++++++.|+.|++
T Consensus 130 ~s~~~~~~~~~~~~~~i~~~d~~~g~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~ 195 (433)
T 3bws_A 130 FIDNTRLAIPLLEDEGMDVLDINSGQTV--------------RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV 195 (433)
T ss_dssp ESSSSEEEEEBTTSSSEEEEETTTCCEE--------------EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE
T ss_pred EeCCCeEEEEeCCCCeEEEEECCCCeEe--------------eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE
Confidence 3445567888888889999965432100 00011134689999999999999999999999999999
Q ss_pred EeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 582 Wd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
||+.+++.+..+..|...+.+++|+|+++++++++ .|+.|++||+.+++. +..+.. ...+.+++|+|++..+++++.
T Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 196 FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp EETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEEEE
T ss_pred EECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEEEC
Confidence 99999999999989999999999999999886554 799999999987653 455544 456999999999886665543
Q ss_pred -------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEE-EcCCeEEEEECCCCeEEEEEcCCCCCEEEEEE
Q 003236 661 -------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSVCW 732 (837)
Q Consensus 661 -------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llag-s~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~ 732 (837)
.|+.|++||+.+++.+..+.+...+.+++|+|+++.++++ +.++.|++||+.+++.+..+. +...+.+++|
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~ 352 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL 352 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred CCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence 5789999999999988888777789999999999876555 678999999999998888776 7788999999
Q ss_pred cCCCCEEEEEe-C---------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEE
Q 003236 733 NTSGEYLASVS-D---------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELW 795 (837)
Q Consensus 733 spdg~~Lasgs-D---------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~Iw 795 (837)
+|++++|++++ + |.|++||+.++ +.+..+.. ...+.+++|+|++++|++++. |+.|++|
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~ 428 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVY 428 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEE
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEE
Confidence 99999888876 2 49999999887 56666655 567899999999999998886 9999999
Q ss_pred ECCC
Q 003236 796 NMTE 799 (837)
Q Consensus 796 Dl~s 799 (837)
++..
T Consensus 429 ~~~~ 432 (433)
T 3bws_A 429 RRDG 432 (433)
T ss_dssp EETT
T ss_pred EecC
Confidence 9864
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.7e-26 Score=250.92 Aligned_cols=263 Identities=11% Similarity=0.089 Sum_probs=201.1
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VW 582 (837)
...+.++++|+.|+.|++|...... .. ..+. ...|.++.|+|+ +++++.|++|++|
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~----------------~~---~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSK----------------TI---TTIT--TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSS----------------CE---EEEE--EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred cCCCCEEEEECCCCcEEEEECCCCc----------------EE---EEEe--cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 3456789999999999999764431 11 1111 355778888888 9999999999999
Q ss_pred eCC---------CCeEEEEec-cCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCCceeEEe-eccccceEEEEEc
Q 003236 583 CTE---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFH 649 (837)
Q Consensus 583 d~~---------t~~~~~~l~-~h~~~I~~l~fsp--dg~~Latgs~Dg~I~IWDl~~~~~~~~~~-~~h~~~V~sl~fs 649 (837)
+.. +++.+..+. .|.+.|.+++|+| ++++|++++.||+|++||+.+++. +... ..|...|.+++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~ 179 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLH 179 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEEC
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEEC
Confidence 665 445444443 6778999999999 999999999999999999998765 4444 4556689999999
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeee-eEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcC---C
Q 003236 650 PSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H 723 (837)
Q Consensus 650 pdg~~llasgs~Dg~I~vwDl~t~~~i-~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~---h 723 (837)
|++. ++++|+.||.|++||+++++.+ ..+.. ...|.+++|+|++.+|++++ ++.|++||+++.+.+..+.. |
T Consensus 180 pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 3lrv_A 180 KDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP 257 (343)
T ss_dssp TTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-
T ss_pred CCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc
Confidence 9976 7779999999999999999877 55654 67899999999999999999 55999999998866544432 3
Q ss_pred CCCEE--EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC---CCCEEEEEEcCCeEEEEE
Q 003236 724 KNQVH--SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWN 796 (837)
Q Consensus 724 ~~~V~--sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp---dg~~L~sgs~dg~I~IwD 796 (837)
...+. +++|+|++++|++++ |+.|+||++...... ... ..+..++|.+ +...+++++.|+.+.++-
T Consensus 258 ~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 258 EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--WTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp ----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS--EEE-----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc--eEe-----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 33443 699999999999966 889999999765321 111 4567788888 888999999999888875
Q ss_pred CCC
Q 003236 797 MTE 799 (837)
Q Consensus 797 l~s 799 (837)
...
T Consensus 331 ~~~ 333 (343)
T 3lrv_A 331 KTN 333 (343)
T ss_dssp ECS
T ss_pred ecC
Confidence 433
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=7e-25 Score=238.02 Aligned_cols=285 Identities=13% Similarity=0.116 Sum_probs=198.6
Q ss_pred eeeeEEEEecCCCCC----eEEEEEcCCCC---EEEEEECCCcEEEEeCCCC---eEEEEeccCCCCeEEEEEcCCCCEE
Q 003236 543 FTFTEFQLIPASTSK----VESCHFSPDGK---LLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRL 612 (837)
Q Consensus 543 ~~~~~~~~l~~H~~~----V~sl~fSpdg~---~Lasgs~Dg~I~VWd~~t~---~~~~~l~~h~~~I~~l~fspdg~~L 612 (837)
..+..+..|+.-.+. |.++-|-.-|- .+++++ ...|++|+..++ ++++++..|..+|..|.|.||..-|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 101 (356)
T 2w18_A 23 GNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL 101 (356)
T ss_dssp -CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC
T ss_pred ceeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce
Confidence 344556666655443 45555644332 566666 468999999988 8999999999999999999964332
Q ss_pred -EEEeCC---CeEEEEEcCCC--C-ceeEEeeccccceEEEEEcCCCCeEEEEEe--CCCcEEEEECC-CCeeeeEEec-
Q 003236 613 -ATSSAD---RTVRVWDTENP--D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSIN-NGSCAGVFKC- 681 (837)
Q Consensus 613 -atgs~D---g~I~IWDl~~~--~-~~~~~~~~h~~~V~sl~fspdg~~llasgs--~Dg~I~vwDl~-t~~~i~~~~~- 681 (837)
.++-.. +.|+..-+... . .......+|...|.++ ++ ..++.+++ .|+.|++|++. +++.+..+..
T Consensus 102 ~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 102 VCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 222211 11211111111 0 1122224455555554 34 55665643 59999999994 4776665554
Q ss_pred CCCeeEEEEec---CCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC---CCEEEEEEcCCCCEE------------EEEe
Q 003236 682 QSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYL------------ASVS 743 (837)
Q Consensus 682 ~~~i~sl~~sp---~g~~llags~dg~I~iwDl~s~~~~~~l~~h~---~~V~sl~~spdg~~L------------asgs 743 (837)
...+..++|++ ++..|++++.|++|+|||+++++++.++.+|. ..+.+++|+|+|.++ ++|+
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 55688889998 77999999999999999999999999998754 367788999999987 4466
Q ss_pred -CCeEEEEEcCCCCCceeEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCee-EE
Q 003236 744 -DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SL 815 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~~i~~~-----~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~-sl 815 (837)
|++|++||..++ .++..+ .+|...+.+..++ +..+++++.|++|+|||+.+++++ ++.+|...+. .+
T Consensus 258 ~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v 332 (356)
T 2w18_A 258 PVFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV 332 (356)
T ss_dssp CCEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEE
T ss_pred CCcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE
Confidence 889999999887 555443 2444445444444 778999999999999999999988 6677877655 68
Q ss_pred EEeCCCCEEEEEECCCcEEEeC
Q 003236 816 AASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 816 a~spdg~~LaSgs~DG~I~IWd 837 (837)
+|+|||++|++|+.|++|+|||
T Consensus 333 afSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEec
Confidence 9999999999999999999997
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=4.4e-25 Score=249.94 Aligned_cols=265 Identities=13% Similarity=0.078 Sum_probs=217.0
Q ss_pred EEecCCCCCeEEEEEcC--------------CCCEEEEEECC------CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC
Q 003236 549 QLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSp--------------dg~~Lasgs~D------g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd 608 (837)
..+.+|...|.++++++ .+..+++++.+ +.|++||++. .....+..|...|.+++|+||
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence 44678888888887775 15566666554 7999999975 446677789999999999999
Q ss_pred CCEEEEEeCCC---eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc--EEEEECCCCeeeeEEecCC
Q 003236 609 LSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFKCQS 683 (837)
Q Consensus 609 g~~Latgs~Dg---~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~--I~vwDl~t~~~i~~~~~~~ 683 (837)
|++|++++.|+ .|++||+.+++. ..+..|...+.+++|+|++..++++++.++. |++||+.++++.....+..
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~ 267 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS 267 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence 99999999885 999999998763 4567788899999999999988878876654 9999999988765555567
Q ss_pred CeeEEEEecCCCEEEEEEcC-C--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCC
Q 003236 684 GATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGS 756 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~d-g--~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D---g~I~IwDl~s~~ 756 (837)
.+.+++|+|+++.|++++.+ + .|++||+.+++. ..+..+...+.+++|+|+|++|++++ + ..|++||+.++.
T Consensus 268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 79999999999999988864 4 788889988764 34555777899999999999999887 4 489999998873
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECCCCcEEEeccCCCCeeEEEEeCCCC
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~ 822 (837)
. ..+..+. .+.+++|+|+|++|++++.++ .|++||+..+....+..|.+.|.+++|+|...
T Consensus 347 ---~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 347 ---V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ---E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred ---E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 3 3344443 889999999999999998877 89999999888888999999999999999654
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1.3e-25 Score=252.16 Aligned_cols=236 Identities=11% Similarity=0.110 Sum_probs=178.1
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcC--------CCCEEEEEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATGG 574 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSp--------dg~~Lasgs 574 (837)
.....++++|+.|++|++|...... ......+..+.+|.+.|++|+|+| |+++||+|+
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~--------------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNET--------------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTE--------------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCc--------------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 3445689999999999999654321 112234456789999999999998 889999999
Q ss_pred CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCcee--------------------
Q 003236 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL-------------------- 633 (837)
Q Consensus 575 ~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~-------------------- 633 (837)
.|++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||+.++....
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 99999999999888888888899999999999986 489999999999999998754311
Q ss_pred ----EEeeccccceEEEEEc-CCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-------------------CCeeEEE
Q 003236 634 ----RTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQMR 689 (837)
Q Consensus 634 ----~~~~~h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-------------------~~i~sl~ 689 (837)
....+|...|.++.|+ +++. .+++++.|+.|++||+..+.....+... .......
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred ceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence 1224677889999997 5655 6679999999999999877655443221 1122233
Q ss_pred Eec-CCCE-EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003236 690 FQP-RLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG 753 (837)
Q Consensus 690 ~sp-~g~~-llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~ 753 (837)
+++ .++. +++++.|+.|++||+.++.++..+..|...|.+++|+|||++||+++++.+.+|.+.
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 444 3444 455667999999999999888888889999999999999999999998878888764
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=8.4e-25 Score=247.66 Aligned_cols=273 Identities=15% Similarity=0.168 Sum_probs=219.8
Q ss_pred CCeEEEEEcCCCC-EEEEEE----CCC----cEEEEeC--CCCeEE--EEeccCCCCeEEEEEcC--------------C
Q 003236 556 SKVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP--------------S 608 (837)
Q Consensus 556 ~~V~sl~fSpdg~-~Lasgs----~Dg----~I~VWd~--~t~~~~--~~l~~h~~~I~~l~fsp--------------d 608 (837)
..|....|++.|. ++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4677888888775 666776 467 8999999 888877 55888888888887764 1
Q ss_pred CCEEEEEeCC------CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC---CcEEEEECCCCeeeeEE
Q 003236 609 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVF 679 (837)
Q Consensus 609 g~~Latgs~D------g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D---g~I~vwDl~t~~~i~~~ 679 (837)
+..|+.++.+ +.|++||++... ...+.+|...|.+++|+|++..++ +++.+ ..|++||+.++++....
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~ 219 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVA 219 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS--CEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC--CEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEee
Confidence 5667666654 799999998533 577788999999999999988655 55555 49999999999887666
Q ss_pred ecCCCeeEEEEecCCCEEEE-EEcCC--eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEc
Q 003236 680 KCQSGATQMRFQPRLGRILA-AAIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSI 752 (837)
Q Consensus 680 ~~~~~i~sl~~sp~g~~lla-gs~dg--~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl 752 (837)
.+...+.+++|+|+++.|++ ++.++ .|++||+++++. ..+..|...+.+++|+|||++|++++ ++ .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 66778999999999998884 44444 599999998876 56677888999999999999988877 34 6888898
Q ss_pred CCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 753 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 753 ~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d---g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
.++. ...+..+...+.+++|+|+|++|++++.+ ..|++||+.+++...+..|. .+.+++|+|+|++|++++.
T Consensus 299 ~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 299 NGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp TSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred CCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 8763 23344566788999999999999988875 48999999999887777665 8999999999999999887
Q ss_pred CC---cEEEeC
Q 003236 830 DK---CVKIWK 837 (837)
Q Consensus 830 DG---~I~IWd 837 (837)
|+ .|++||
T Consensus 374 ~~~~~~l~~~d 384 (415)
T 2hqs_A 374 QGMGSVLNLVS 384 (415)
T ss_dssp ETTEEEEEEEE
T ss_pred CCCccEEEEEE
Confidence 77 788885
No 129
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=6.8e-23 Score=223.48 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=217.4
Q ss_pred CCeEEEEEcCCCCEEEEEEC-------CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcC
Q 003236 556 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE 627 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~-------Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~ 627 (837)
..+..++|+|+|++|++++. ++.|.+||..+++.+..+.. ...+.+++|+|++++++++ ..++.|.+||+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 45889999999999888874 56899999999998888764 3457899999999966555 557999999999
Q ss_pred CCCceeEEeecccc---------ceEEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCE
Q 003236 628 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGR 696 (837)
Q Consensus 628 ~~~~~~~~~~~h~~---------~V~sl~fspdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~ 696 (837)
+++. +..+..+.. .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+. ....+.+++|+|++++
T Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 8764 444444332 278899999998777666 457899999999999998887 4556889999999999
Q ss_pred EEEEEcCCeEEEEECCCCeEEEEEcC----CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 697 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 697 llags~dg~I~iwDl~s~~~~~~l~~----h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
+++++.++.|.+||+.+++.+..+.. +...+.+++|+|++++|+++. ++.|.+||+.++ +.+..+....
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~-- 273 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE-- 273 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence 99999999999999999988877764 556788999999999887776 589999999887 4455544333
Q ss_pred eEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 771 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
...++|+|+++++++++ .++.|.+||+.+++.+........+.+++|+|++++|+++..+
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 25689999999887777 5789999999999988555555678999999999977766654
No 130
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=4.4e-23 Score=223.64 Aligned_cols=274 Identities=7% Similarity=0.133 Sum_probs=206.9
Q ss_pred EEEcCCCCE-EEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeec
Q 003236 561 CHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 561 l~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
..|.+++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|++++|++++. ++.|++||+.+++.....+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665554 6777889999999999999988887777777 9999999997777666 899999999987753556666
Q ss_pred cccceEEEEEcCCCCeEEEEEeCC-C--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCe-EEEEECCC
Q 003236 639 HSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY-ISILDVET 713 (837)
Q Consensus 639 h~~~V~sl~fspdg~~llasgs~D-g--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~-I~iwDl~s 713 (837)
+...+.+++|+|++..++ ++..+ + .|++||+.+++.+..+.......+++|+|+++++++++. ++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999988766 44444 3 899999999999998888888899999999987766654 477 99999875
Q ss_pred CeEE----EEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003236 714 QVCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 714 ~~~~----~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs 787 (837)
...+ .........+.+++|+|+|++|+++. ++.|++||+.++.....+..+.. ...+..++|+|++++|++++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEE
Confidence 3222 12223456689999999999766655 78999999988743222555553 46678899999999887776
Q ss_pred c-CCeEEEEECCCCcEE---EeccC----CC---CeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 003236 788 C-YETLELWNMTENKTL---TLSAH----DK---LVSSLAASTVNGMVASASH-DKCVKIWK 837 (837)
Q Consensus 788 ~-dg~I~IwDl~s~~~~---~l~~h----~~---~V~sla~spdg~~LaSgs~-DG~I~IWd 837 (837)
. ++.|.+||+.+++.. .+..+ .. .+..++|+||+++|++++. ++.|.|||
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 4 668999999998873 11111 22 2356899999998876654 56999996
No 131
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=1.7e-23 Score=227.24 Aligned_cols=252 Identities=10% Similarity=0.056 Sum_probs=179.2
Q ss_pred ccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC-C---CcEEEEeCCCC----eEEEEeccCCCCeEEEEEcCCC
Q 003236 538 EVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-D---KKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSL 609 (837)
Q Consensus 538 ~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~-D---g~I~VWd~~t~----~~~~~l~~h~~~I~~l~fspdg 609 (837)
...++..++.++++..|..+|..|.|.||-.-|++..- . +.|+..-+... .....-.+|...|..+ +++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g 145 (356)
T 2w18_A 69 KALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKR 145 (356)
T ss_dssp EESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTT
T ss_pred ccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCC
Confidence 33445566778888888888888888886543322211 1 11111111111 1111123344445444 456
Q ss_pred CEEEEEe--CCCeEEEEEcCCCCceeEEeeccccceEEEEEcC--CCCeEEEEEeCCCcEEEEECCCCeeeeEEecC---
Q 003236 610 SRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--- 682 (837)
Q Consensus 610 ~~Latgs--~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--- 682 (837)
+++.+++ .|+.|++|++......+..+.+|...+..++|++ ....+|++++.|++|+|||+++++++.++..+
T Consensus 146 ~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~ 225 (356)
T 2w18_A 146 RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY 225 (356)
T ss_dssp EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--
T ss_pred cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc
Confidence 6555543 5999999999654445777888999999999998 22457889999999999999999999999742
Q ss_pred -CCeeEEEEecCCCEE------------EEEEcCCeEEEEECCCCeEEEEE-----cCCCCCEEEEEEcCCCCEEEEEe-
Q 003236 683 -SGATQMRFQPRLGRI------------LAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS- 743 (837)
Q Consensus 683 -~~i~sl~~sp~g~~l------------lags~dg~I~iwDl~s~~~~~~l-----~~h~~~V~sl~~spdg~~Lasgs- 743 (837)
..+.+++|+|++..+ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++++
T Consensus 226 v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~ 303 (356)
T 2w18_A 226 QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILT 303 (356)
T ss_dssp -CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEET
T ss_pred eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcC
Confidence 357788999998876 45677899999999999887765 3676666555554 88899998
Q ss_pred CCeEEEEEcCCCCCceeEEEeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 744 DELVRVWSIGSGSKGECIHELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 744 Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~-sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
|++|+|||+.++ +++.++.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus 304 DgTIkIWDl~tG---k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SGTIAIWDLLLG---QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TSCEEEEETTTC---SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEECCCC---cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999998 78889988876655 5899999999999999999999995
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=5.9e-23 Score=222.45 Aligned_cols=266 Identities=9% Similarity=0.129 Sum_probs=197.5
Q ss_pred EEEEEECCCcEEEEeCC-CC--eEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-CeEEEEEcC--CCCce-eEEeecccc
Q 003236 569 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDYS-LRTFTGHST 641 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~-t~--~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g~I~IWDl~--~~~~~-~~~~~~h~~ 641 (837)
++++++.|+.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. ++... +..+..+ .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-G 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-S
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-C
Confidence 34444789999999985 33 333333 477789999999999999998887 999999998 44432 2334433 3
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEEC---CCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC-CeE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVET-QVC 716 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t~~~i~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s-~~~ 716 (837)
.+.+++|+|++..+++++..++.|.+||+ ...+.+..+.....+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 78999999999888777777899999999 4445555666667789999999999998888 789999999987 544
Q ss_pred EE----EEcC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CceeEEEee---cC---CCceEEEEEeCCCCE
Q 003236 717 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELS---CT---GNKFHSCVFHPTFPS 782 (837)
Q Consensus 717 ~~----~l~~-h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~-~~~~i~~~~---~~---~~~I~sv~fspdg~~ 782 (837)
.. .+.. ....+.+++|+|++++|++++ ++.|++||+.... ....+..+. .. ...+..++|+|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 244 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 244 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence 32 2232 345788999999999776654 8899999996421 112222222 11 235678999999998
Q ss_pred EEEEE-cCCeEEEEECC--CCc--EE-EeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003236 783 LLVIG-CYETLELWNMT--ENK--TL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 837 (837)
Q Consensus 783 L~sgs-~dg~I~IwDl~--s~~--~~-~l~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWd 837 (837)
|++++ .++.|.+||+. ++. .+ .+..+. .+.+++|+|++++|++++ .|+.|.||+
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 88666 67899999998 333 33 333343 489999999999888887 689999994
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=4e-23 Score=242.10 Aligned_cols=268 Identities=9% Similarity=0.063 Sum_probs=214.9
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--CCCCceeEEeecc
Q 003236 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGH 639 (837)
Q Consensus 562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl--~~~~~~~~~~~~h 639 (837)
+|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+||+++|++++.|++|++||+ .+.+ .+..+. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-~~~~i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-EEEEEe-c
Confidence 3788999999999999999999999999999874433 899999999999999999999999999 6644 355555 4
Q ss_pred ccceEEEEEcC----CCCeEEEEEeCCCcEEEEECCCCeeeeEEecC------------CCeeEEEEecCCCEEEEEE-c
Q 003236 640 STTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAA-I 702 (837)
Q Consensus 640 ~~~V~sl~fsp----dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~------------~~i~sl~~sp~g~~llags-~ 702 (837)
...+..++|+| +++.+++++..++.|.+||..+++++..+... ..+..+.+++++..+++.. .
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 56689999999 99877766667999999999999998887642 2578999999887766554 5
Q ss_pred CCeEEEEECCCCeEEE--EEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec----CCCceEEE
Q 003236 703 ENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC 774 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~--~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~sv 774 (837)
++.|.+||+.+.+.+. .+. +...+.+++|+|++++|++++ +++|.+||+.++ +++..+.. |......+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence 7899999998764332 443 567788999999999877665 889999999988 56666553 43333333
Q ss_pred EEeCCCCEEEEEE--cCCeEEEEECCC-------CcEE-EeccCCCCeeEEEEeCCCCEEEEEE-------CCCcEEEeC
Q 003236 775 VFHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK 837 (837)
Q Consensus 775 ~fspdg~~L~sgs--~dg~I~IwDl~s-------~~~~-~l~~h~~~V~sla~spdg~~LaSgs-------~DG~I~IWd 837 (837)
++|++..+++.+ .+++|.+||+.+ ++++ ++..|...+..++|+|++++|++++ .+++|.|||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d 455 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 455 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence 578754454444 478999999988 7776 7778888899999999999999987 277999997
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=3e-23 Score=251.06 Aligned_cols=275 Identities=14% Similarity=0.091 Sum_probs=213.6
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CC-----cEEEEeCCCCeEEEEeccCCC------------------------CeEEEE
Q 003236 555 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR 604 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~-Dg-----~I~VWd~~t~~~~~~l~~h~~------------------------~I~~l~ 604 (837)
...|.+++|||||++|++++. |+ .|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456999999999999999998 88 899999999988777765443 388999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCC-ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC
Q 003236 605 FSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS 683 (837)
Q Consensus 605 fspdg~~Latgs~Dg~I~IWDl~~~~-~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~ 683 (837)
|+|||++|++++. +.|++||+.++. .....+..|...+.+++|+|||+.+++ ++ ++.|++||+.+++.........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCCC
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCCc
Confidence 9999999999986 999999999762 014556778888999999999986654 44 5689999999887765544322
Q ss_pred C-----------------eeEEEEecCCCEEEEEEcCC---------------------------------eEEEEECCC
Q 003236 684 G-----------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVET 713 (837)
Q Consensus 684 ~-----------------i~sl~~sp~g~~llags~dg---------------------------------~I~iwDl~s 713 (837)
. +..+.|+|++++|++++.|+ .|.+||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 2 47899999999999988765 789999988
Q ss_pred -CeEEEEEc--CCCCCEEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCceeEEEeecCCC----ceEEEEEeCCC
Q 003236 714 -QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPTF 780 (837)
Q Consensus 714 -~~~~~~l~--~h~~~V~sl~~spdg~~Lasgs------Dg~I~IwDl~s~~~~~~i~~~~~~~~----~I~sv~fspdg 780 (837)
++...... .|...+.+++| |||++|+++. +..|++||+.++. +...+..+.. .+..++|+|||
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---QRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---EEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---eEEEEEcCCCCcCCcCCceEECCCC
Confidence 76554433 37778999999 9999988764 3479999999873 3333333332 34678999999
Q ss_pred CEEEEEEcCCeEEEEEC--CCCcEEEeccCCCCeeEE-EEeCCCCEEEE-EECCC--cEEEeC
Q 003236 781 PSLLVIGCYETLELWNM--TENKTLTLSAHDKLVSSL-AASTVNGMVAS-ASHDK--CVKIWK 837 (837)
Q Consensus 781 ~~L~sgs~dg~I~IwDl--~s~~~~~l~~h~~~V~sl-a~spdg~~LaS-gs~DG--~I~IWd 837 (837)
+++++++.++.+.||.+ ..+ ...+..|...|..+ +|+|+++.|+. ++.|+ .++||+
T Consensus 349 ~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 349 SILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp CEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred eEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 98888888886666654 444 55777888888887 59999987754 44555 888984
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=7.8e-23 Score=215.49 Aligned_cols=252 Identities=11% Similarity=0.097 Sum_probs=196.2
Q ss_pred EECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCceeEEeecc-ccceEEEEEcC
Q 003236 573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFHP 650 (837)
Q Consensus 573 gs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~-~~~~~~~~~~h-~~~V~sl~fsp 650 (837)
++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ ++. ......+ ...|.+++|+|
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEECT
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEECC
Confidence 4578999999999988764 446889999999999999999986 78999999998 654 4444444 47889999999
Q ss_pred CCCeEEEEEe-C--CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEE-EEEcCCeEEEEEC--CCCeEEEEEcCCC
Q 003236 651 SKEDLLCSCD-N--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRIL-AAAIENYISILDV--ETQVCRLKLQGHK 724 (837)
Q Consensus 651 dg~~llasgs-~--Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ll-ags~dg~I~iwDl--~s~~~~~~l~~h~ 724 (837)
++..+++++. . ...|++|++.++. ...+.....+..++|+|+++.++ ++..++.+.+|++ .++. ...+..+.
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 172 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGE 172 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSS
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCC
Confidence 9886665442 2 2455555666555 34444455688999999999887 6778898888885 3343 45566688
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------Ce
Q 003236 725 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------ET 791 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----------g~ 791 (837)
..+.+++|+|++++|++++ ++.++||++.... ..+..+..+...+..++|+|++++|++++.+ ..
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 8999999999999887665 7889999986322 3455666677788999999999999988876 46
Q ss_pred EEEEECCCCcEE---EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003236 792 LELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 792 I~IwDl~s~~~~---~l~~h~~~V~sla~spdg~~LaSgs~DG 831 (837)
|++||+.+++.. .+..|...|.+++|+|++++|++++.|.
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999988754 3447888999999999999998887664
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.2e-22 Score=245.83 Aligned_cols=272 Identities=11% Similarity=0.065 Sum_probs=205.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
.|.+++|||||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence 4889999999999999986 999999998873 3445667888999999999999999987 46899999987553 33
Q ss_pred Eeeccccc----------------eEEEEEcCCCCeEEEEEeCCC--------------------------------cEE
Q 003236 635 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR 666 (837)
Q Consensus 635 ~~~~h~~~----------------V~sl~fspdg~~llasgs~Dg--------------------------------~I~ 666 (837)
....+... +.+++|+|||+.++++...++ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 33333322 478999999987775544221 789
Q ss_pred EEECCC-CeeeeEEe---cCCCeeEEEEecCCCEEEEEEc-----CCeEEEEECCCCeEEEEEcCCCC----CEEEEEEc
Q 003236 667 YWSINN-GSCAGVFK---CQSGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN 733 (837)
Q Consensus 667 vwDl~t-~~~i~~~~---~~~~i~sl~~sp~g~~llags~-----dg~I~iwDl~s~~~~~~l~~h~~----~V~sl~~s 733 (837)
+||+.+ ++...... +...+..++| |+++.|++++. +..|++||+.++++...+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999998 77655432 3345889999 99999998775 46899999999987777665543 45689999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEE-EEeCCCCEEEEEEcCC---eEEEEECCC-CcEE-Eec
Q 003236 734 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NKTL-TLS 806 (837)
Q Consensus 734 pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv-~fspdg~~L~sgs~dg---~I~IwDl~s-~~~~-~l~ 806 (837)
|||+++++++ |+.++||.+.... . ...+..+...+..+ .|+|+++.|++.+.++ .++||++.. +... .+.
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 9999888877 8888888776322 3 56666777778887 5999999887666544 788998753 4433 443
Q ss_pred cCCCCeeEEEEeCCCCEEEEEECC----CcEEEe
Q 003236 807 AHDKLVSSLAASTVNGMVASASHD----KCVKIW 836 (837)
Q Consensus 807 ~h~~~V~sla~spdg~~LaSgs~D----G~I~IW 836 (837)
. ...+..++|+||+++|+....+ ..+.+|
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~ 455 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF 455 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence 3 6778999999999988766543 345555
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=8e-22 Score=213.52 Aligned_cols=295 Identities=11% Similarity=0.080 Sum_probs=207.0
Q ss_pred eEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEeCC-
Q 003236 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE- 585 (837)
Q Consensus 508 ~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~D-g~I~VWd~~- 585 (837)
++++++.|+.|.+|...... ....+..+ .|...+.+++|+|+|++|++++.+ +.|.+|++.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~----------------~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG----------------ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS----------------CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEeCCCCCeEEEEEECCCC----------------cEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC
Confidence 34444678889999653210 11122222 466789999999999999988886 999999987
Q ss_pred -CCe--EEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCC--ceeEEeeccccceEEEEEcCCCCeEEEEE
Q 003236 586 -SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659 (837)
Q Consensus 586 -t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~--~~~~~~~~h~~~V~sl~fspdg~~llasg 659 (837)
+++ .+..+..+. .+.+++|+|++++|++++. ++.|.+||+.++. ..+..+. ....+.+++|+|++..+++++
T Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~ 147 (343)
T 1ri6_A 70 DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPA 147 (343)
T ss_dssp TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEE
T ss_pred CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEec
Confidence 444 344554444 7899999999998877765 8899999995222 1233333 334689999999998777666
Q ss_pred eCCCcEEEEECCC-CeeeeE----Ee--cCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEcC---C-
Q 003236 660 DNNSEIRYWSINN-GSCAGV----FK--CQSGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQG---H- 723 (837)
Q Consensus 660 s~Dg~I~vwDl~t-~~~i~~----~~--~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s--~~~--~~~l~~---h- 723 (837)
..++.|++||+.+ ++.... +. ....+..++|+|+++++++++ .++.|.+||+.. ++. ...+.. .
T Consensus 148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 5899999999987 654322 22 234688899999999887776 689999999953 322 223321 1
Q ss_pred --CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--
Q 003236 724 --KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW-- 795 (837)
Q Consensus 724 --~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~Iw-- 795 (837)
...+.+++|+|++++|+++. ++.|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+|
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence 24677899999999887554 889999999842 12245555554444 88999999999999888 57899999
Q ss_pred ECCCCcEE--EeccCCCCeeEEEEeCCCC
Q 003236 796 NMTENKTL--TLSAHDKLVSSLAASTVNG 822 (837)
Q Consensus 796 Dl~s~~~~--~l~~h~~~V~sla~spdg~ 822 (837)
|..+++.. ..........+++|.++.+
T Consensus 307 d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 307 VGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp ETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred cCCCceeeEccccccCCCCeeEEEEcccC
Confidence 45566543 2222335677888887654
No 138
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=3.1e-22 Score=216.16 Aligned_cols=262 Identities=11% Similarity=0.067 Sum_probs=207.4
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCC--CeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEee-cc----
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH---- 639 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~--~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~-~h---- 639 (837)
++|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ +++.++.|.+||+.+++. +..+. ++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence 4789999999999999999999887753322 588999999998765 555678999999988764 33333 22
Q ss_pred ccceEEEEEcCCCCeEEEEEe-----------CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 640 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 640 ~~~V~sl~fspdg~~llasgs-----------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
...+.+++|+|+++.++++.. .++.|.+||+.+++.+..+.....+.+++|+|++++++++ ++.|.+
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence 236788999999887665531 4799999999999988888877778899999999988887 789999
Q ss_pred EECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC-----------------------eEEEEEcCCCCCceeEEE
Q 003236 709 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 709 wDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg-----------------------~I~IwDl~s~~~~~~i~~ 763 (837)
||+.+++.+..+..+.. ...+.|+|++.+|+... ++ .|.+||+.++... ...
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~ 235 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE 235 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence 99999988877765431 11237899988766554 22 4689999887432 334
Q ss_pred eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 764 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 764 ~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+..+...+..++|+|++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus 236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 45566778899999999998888 6899999999998875555556789999999999999999999999996
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.2e-21 Score=212.40 Aligned_cols=292 Identities=11% Similarity=0.085 Sum_probs=211.6
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT 584 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~ 584 (837)
..++++++.++.|.+|..... .....+..+...+ +++|+|||++|++++. ++.|++||+
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTL-------------------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred CEEEEEecCCCeEEEEeCccc-------------------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 355677778888999855332 1123334455566 9999999997776665 889999999
Q ss_pred CCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe
Q 003236 585 ESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 585 ~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg---~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs 660 (837)
.+++. ...+..+...+.+++|+|++++|+++..++ .|.+||+.+++. +..+.. ...+.+++|+|+++.+++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEE
T ss_pred CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEec
Confidence 99887 777777777666699999999999655553 999999987653 444443 445789999999988888877
Q ss_pred CCCc-EEEEECCCCeee-----eEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE---EEEEcCCCCCEEEE
Q 003236 661 NNSE-IRYWSINNGSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC---RLKLQGHKNQVHSV 730 (837)
Q Consensus 661 ~Dg~-I~vwDl~t~~~i-----~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~---~~~l~~h~~~V~sl 730 (837)
.++. |.+|++.....+ ..+.....+..++|+|+++++++++ .++.|.+||+.+++. +..+.. ...+.++
T Consensus 148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~ 226 (331)
T 3u4y_A 148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTI 226 (331)
T ss_dssp TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCE
T ss_pred CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceE
Confidence 7788 999999764332 2233356688999999999877776 478999999998876 767764 4667899
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecC----CC---ceEEEEEeCCCCEEEEEEcC-CeEEEEECCCC
Q 003236 731 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT----GN---KFHSCVFHPTFPSLLVIGCY-ETLELWNMTEN 800 (837)
Q Consensus 731 ~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~----~~---~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~ 800 (837)
+|+|+|++|+++. ++.|.+||+.++.. ..+..+... .. ....++|+|++++|++++.+ +.|.+||+.+.
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 9999999887765 67899999988632 123333322 11 22458999999999877765 59999999887
Q ss_pred cEEEeccCCCCeeEEEEeCCC
Q 003236 801 KTLTLSAHDKLVSSLAASTVN 821 (837)
Q Consensus 801 ~~~~l~~h~~~V~sla~spdg 821 (837)
..-.+......-....++|+.
T Consensus 306 ~~~~~~~~~~~g~~~~~~~~~ 326 (331)
T 3u4y_A 306 VVGYVAGIEANGGIAICHPDK 326 (331)
T ss_dssp EEEECTTCCCBSCEEECCCC-
T ss_pred cccceecccccCCeEEECCcc
Confidence 665554444333334444543
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.3e-22 Score=213.67 Aligned_cols=238 Identities=14% Similarity=0.111 Sum_probs=186.8
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEeccC-CCCeEEEEEcCCCCEEEEEe--CCCeEEEEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVRFSPSLSRLATSS--ADRTVRVWD 625 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h-~~~I~~l~fspdg~~Latgs--~Dg~I~IWD 625 (837)
.+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..| ...|.+++|+|++++|++++ .++.+.||.
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 4456788999999999999999987 78999999998 8777766665 47889999999999999998 334555555
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC--CCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAI- 702 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl--~t~~~i~~~~~~~~i~sl~~sp~g~~llags~- 702 (837)
++........+..+. .+.+++|+|++..++++++.++.+++|++ .++...........+.++.|+|++..+++++.
T Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 193 (297)
T 2ojh_A 115 LPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR 193 (297)
T ss_dssp EETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred EECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence 432222244444443 48999999999988888888998899885 44555444445677999999999998887774
Q ss_pred CCeEEEEECC-CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C-----------CeEEEEEcCCCCCceeEEEeecCCC
Q 003236 703 ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------ELVRVWSIGSGSKGECIHELSCTGN 769 (837)
Q Consensus 703 dg~I~iwDl~-s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D-----------g~I~IwDl~s~~~~~~i~~~~~~~~ 769 (837)
++.+.+|++. .+..+..+..|...+.+++|+|++++|++++ + +.|++||+.++.. ..+..+..+..
T Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~ 272 (297)
T 2ojh_A 194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQG 272 (297)
T ss_dssp TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTT
T ss_pred CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCc
Confidence 8888999876 4556667777888899999999999998877 4 4699999987643 44555557788
Q ss_pred ceEEEEEeCCCCEEEEEEcCC
Q 003236 770 KFHSCVFHPTFPSLLVIGCYE 790 (837)
Q Consensus 770 ~I~sv~fspdg~~L~sgs~dg 790 (837)
.+..++|+|++++|++++.+.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 899999999999999888764
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=4.7e-22 Score=234.27 Aligned_cols=268 Identities=9% Similarity=0.041 Sum_probs=205.9
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCC--
Q 003236 555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN-- 628 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~~-- 628 (837)
..+|++++|+|||++||+++. ||++.||++++++.......+...|.+++|+|| +++++++. +....||.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 457999999999999999887 999999999777665444434368999999999 77777765 45556665543
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC----C
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE----N 704 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d----g 704 (837)
..... .+..+ ..+...+|+|+++.++++.+.++.+.+||+.++++........ .+++|+|+|+.|++++.+ .
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence 22222 23222 2344678888887766666556667799999998777666544 889999999999988876 7
Q ss_pred eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC--eEEEEEcCCCCCceeEEEeecCCCceEEEE------
Q 003236 705 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV------ 775 (837)
Q Consensus 705 ~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~------ 775 (837)
.|++||+.+++.. .+..|...+.+++|+|||++|+++. ++ .|++||+.++ ... .+..+...+..++
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccc
Confidence 8999999988755 5677888999999999999999766 77 8999999887 333 5556666666666
Q ss_pred --EeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCc---EEEeC
Q 003236 776 --FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK 837 (837)
Q Consensus 776 --fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~---I~IWd 837 (837)
|+|||..+++++.++.+++|++ ++... .+.+.|.+++|+ +++++++++.+.. |++||
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 9999988888899999999999 66553 345678999999 9999999887743 66654
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=9.7e-23 Score=245.74 Aligned_cols=275 Identities=13% Similarity=0.151 Sum_probs=206.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCC---CeEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW 624 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~I~~l~fspdg~~Latgs~D---------g~I~IW 624 (837)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999998776 7899999999999988888877765 49999999999999999874 788999
Q ss_pred EcCCCCce-eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCC------------------
Q 003236 625 DTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG------------------ 684 (837)
Q Consensus 625 Dl~~~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~------------------ 684 (837)
|+.+++.. +....+|...+.+++|+|||+.++++. ++.|++||+.+++....... ...
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 99987641 122234455689999999998766444 47999999998887665543 222
Q ss_pred eeEEEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEEEEEcCC------C
Q 003236 685 ATQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH------K 724 (837)
Q Consensus 685 i~sl~~sp~g~~llags~dg----------------------------------~I~iwDl~s~~~~~~l~~h------~ 724 (837)
+.++.|+|+++.|++++.++ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 27899999999999887653 7999999988765566544 5
Q ss_pred CCEEEEEEcCCCCEEEEEe-C----CeEEEEEcCCCCCceeEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC--
Q 003236 725 NQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE-- 790 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs-D----g~I~IwDl~s~~~~~~i~~~~~-~~~~I----~sv~fspdg~~L~sg--s~dg-- 790 (837)
..+.+++|+|||++|++.. . ..|++||+.++. +...+.. +...+ ..++|+|||+.|++. ..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 6789999999999887764 2 479999998873 3333322 22333 378999999987764 3455
Q ss_pred ----eEEEEE-CCCCc---EEEeccCCCCeeE-EEEeCCCCEEEEEECC---CcEEEeC
Q 003236 791 ----TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK 837 (837)
Q Consensus 791 ----~I~IwD-l~s~~---~~~l~~h~~~V~s-la~spdg~~LaSgs~D---G~I~IWd 837 (837)
.|++|| ..++. ...+..+...+.. ++|+|||+.|+..+.+ +.++||+
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 577888 45555 4445444445554 6999999999876655 7888884
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2e-21 Score=233.83 Aligned_cols=274 Identities=12% Similarity=0.096 Sum_probs=207.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----C
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----P 629 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~-----~ 629 (837)
...|.+++|||| +.++.+. ++.|++||+.+++..... .+...+.+++|+|||++|+++ .|+.|++||+.+ +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 467999999999 6666654 599999999988765544 467789999999999999995 689999999987 6
Q ss_pred CceeEEeeccccc--------------eEEEEEcCCCCeEEEEEe--------------------------------CCC
Q 003236 630 DYSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNS 663 (837)
Q Consensus 630 ~~~~~~~~~h~~~--------------V~sl~fspdg~~llasgs--------------------------------~Dg 663 (837)
+. ......+... +.+++|+|||+.+++++. .+.
T Consensus 157 ~~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 157 RA-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CC-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred Cc-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 53 3323333332 589999999987765541 346
Q ss_pred cEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEcCC-----eEEEEECCCC-eEEEEEcC-CCC---CEEEE
Q 003236 664 EIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHSV 730 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~llags~dg-----~I~iwDl~s~-~~~~~l~~-h~~---~V~sl 730 (837)
.|++||+.+++...... ....+.+++|+|+++.|++++.++ .|.+||+.++ ........ +.. .+.++
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 79999999988665442 234588999999999999988775 8999999998 44333322 222 24678
Q ss_pred EEcC--CCCEEEEEe-CCeEEEEEcC-CCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----eEEEEECCCC
Q 003236 731 CWNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTEN 800 (837)
Q Consensus 731 ~~sp--dg~~Lasgs-Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~s-v~fspdg~~L~sgs~dg-----~I~IwDl~s~ 800 (837)
+|+| ||++|+++. |+.++||++. ++ ..+..+..+...+.. ++|+|+++.|++++.++ .|+.||+.++
T Consensus 316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp EECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred eeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 9999 999998887 8889999886 33 456666666777776 79999999888777653 6778888887
Q ss_pred cEEEeccCCCCeeEEEEeCCCCEEEEEECC----CcEEEeC
Q 003236 801 KTLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK 837 (837)
Q Consensus 801 ~~~~l~~h~~~V~sla~spdg~~LaSgs~D----G~I~IWd 837 (837)
+...+ .|...+.+++|+|||++|+.++.+ +.|++||
T Consensus 393 ~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 393 KTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp CCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred Cceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 64444 477789999999999988876544 4599985
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.89 E-value=1.3e-21 Score=246.57 Aligned_cols=278 Identities=8% Similarity=-0.002 Sum_probs=226.7
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
...+.+|...|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+.+++|+|||++|+++ .++.|++||+
T Consensus 196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~ 272 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP 272 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence 4455899999999999998 6777888889999997653 34445565565 46778999999999888 4899999999
Q ss_pred CCCCceeEEeec-----------cccceEEEEEc-CCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-CeeEEEEecC
Q 003236 627 ENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-GATQMRFQPR 693 (837)
Q Consensus 627 ~~~~~~~~~~~~-----------h~~~V~sl~fs-pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~sp~ 693 (837)
.... +..+.. |...+.+++|+ |+|..+++++ ++.|++|++..+.......+.. .+..++|+ +
T Consensus 273 ~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 273 DTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp TTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred CceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence 5432 334443 34579999999 9988666544 7899999999887655444445 68899999 9
Q ss_pred CCEEEEEEcCCeEE-EEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCce
Q 003236 694 LGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF 771 (837)
Q Consensus 694 g~~llags~dg~I~-iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I 771 (837)
++.+++++.++.|. +||+..+.... +.+|...+.+++|+|||++|++++ ++.|++||+.++ ........+...+
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---~~~~~~~~~~~~v 423 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMI 423 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCC
T ss_pred CCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---ceEEeccCCCCCc
Confidence 99999998888898 99998876554 347888999999999999999988 889999999887 4555555788889
Q ss_pred EEEEEeCCCCEEEEEEcCC----------eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 772 HSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 772 ~sv~fspdg~~L~sgs~dg----------~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..++|+|||++|++++.++ .|++||+.+++...+..|...+.+++|+|||++|++++.++...+|+
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence 9999999999999887754 89999999998778888999999999999999999999988777774
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1.9e-21 Score=234.42 Aligned_cols=299 Identities=12% Similarity=0.080 Sum_probs=207.6
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCC---CeEEEEEcCCCCEEEEEECC-------
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD------- 576 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~---~V~sl~fSpdg~~Lasgs~D------- 576 (837)
.++++ +.|+++.+|..... .....+..|.. .|.+++|||||++||+++.+
T Consensus 29 ~~~~~-~~dg~i~~~d~~~g-------------------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~ 88 (723)
T 1xfd_A 29 EFIYR-EQKGTVRLWNVETN-------------------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS 88 (723)
T ss_dssp CBCCC-CSSSCEEEBCGGGC-------------------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred cEEEE-eCCCCEEEEECCCC-------------------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence 45554 56778888854322 11234455554 49999999999999999874
Q ss_pred --CcEEEEeCCCCeEEEEe---ccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccc---------
Q 003236 577 --KKAVLWCTESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT--------- 642 (837)
Q Consensus 577 --g~I~VWd~~t~~~~~~l---~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~--------- 642 (837)
+.|++||+.+++. ..+ ..|...+.+++|+|||++|++++. +.|++||+.+++. ......+...
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCH
T ss_pred ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccce
Confidence 7788999998876 333 345556899999999999999986 7999999998664 3333333332
Q ss_pred ---------eEEEEEcCCCCeEEEEEeCC---------------------------------CcEEEEECCCCeeeeEEe
Q 003236 643 ---------VMSLDFHPSKEDLLCSCDNN---------------------------------SEIRYWSINNGSCAGVFK 680 (837)
Q Consensus 643 ---------V~sl~fspdg~~llasgs~D---------------------------------g~I~vwDl~t~~~i~~~~ 680 (837)
+.+++|+|||+.++++...+ ..|++||+.++++...+.
T Consensus 166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~ 245 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM 245 (723)
T ss_dssp HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence 37899999998776554322 279999999887655554
Q ss_pred c-------CCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCeEEEEEcC-CCCCE----EEEEEcCCCCEEEEE-e
Q 003236 681 C-------QSGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQG-HKNQV----HSVCWNTSGEYLASV-S 743 (837)
Q Consensus 681 ~-------~~~i~sl~~sp~g~~llags~d----g~I~iwDl~s~~~~~~l~~-h~~~V----~sl~~spdg~~Lasg-s 743 (837)
. ...+..+.|+|+++.+++.... ..|++||+.++++...+.. +...+ .+++|+|||+.|+.. +
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence 3 2457889999999988766543 5799999999887666543 33444 378999999977754 3
Q ss_pred --CC------eEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcC---CeEEEEECCCC---cEEEecc-
Q 003236 744 --DE------LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA- 807 (837)
Q Consensus 744 --Dg------~I~IwDl~s~~~~~~i~~~~~~~~~I~s-v~fspdg~~L~sgs~d---g~I~IwDl~s~---~~~~l~~- 807 (837)
++ .|++||+..+....+...+......+.. ++|+|+++.|++.+.+ +.++||++... +...+..
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 405 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD 405 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc
Confidence 66 4666663232210012333333344544 6999999999877766 68889987643 2223333
Q ss_pred --CCCCeeEEEEeCCCCEEEEEE
Q 003236 808 --HDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 808 --h~~~V~sla~spdg~~LaSgs 828 (837)
|...+..++|+|||++|+...
T Consensus 406 ~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 406 LVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp SSSSCCCCEEEECTTSSEEEEEC
T ss_pred ccCCCCeEEEEECCCCCEEEEEc
Confidence 677799999999999887654
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=4.6e-21 Score=241.66 Aligned_cols=280 Identities=11% Similarity=0.062 Sum_probs=222.7
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECC------CcEEEEeCCCCeEEEEeccCCCCe-------EEEEEcCCCCEEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWI-------TDVRFSPSLSRLAT 614 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~D------g~I~VWd~~t~~~~~~l~~h~~~I-------~~l~fspdg~~Lat 614 (837)
...+.+|...|.+++|||||++||+++.+ ..|++|++.+++ ...+..|...+ .+++|+|||+++++
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~ 123 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 123 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence 35567899999999999999999988643 379999998876 56778888888 99999999997777
Q ss_pred EeCC------CeEEEEEcCCCCce------------------------------------------------eEEeeccc
Q 003236 615 SSAD------RTVRVWDTENPDYS------------------------------------------------LRTFTGHS 640 (837)
Q Consensus 615 gs~D------g~I~IWDl~~~~~~------------------------------------------------~~~~~~h~ 640 (837)
++.+ ..|++||+.++... ...+.+|.
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~ 203 (1045)
T 1k32_A 124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS 203 (1045)
T ss_dssp ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence 7754 35788887543211 11234567
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~ 719 (837)
..+.++.|+++ .++++++.++.+.+|.+.. +.....+.....+...+|+|++..++++ .++.|++||+...... .
T Consensus 204 ~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~ 279 (1045)
T 1k32_A 204 THVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-K 279 (1045)
T ss_dssp SCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-E
T ss_pred CcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-e
Confidence 78888899876 5777888889889997653 3344455445567788999999988887 5899999999554433 5
Q ss_pred EcC-----------CCCCEEEEEEc-CCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCC-ceEEEEEeCCCCEEEEE
Q 003236 720 LQG-----------HKNQVHSVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 720 l~~-----------h~~~V~sl~~s-pdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~-~I~sv~fspdg~~L~sg 786 (837)
+.. |...+.+++|+ |||++|++++++.|++|++..+ . ...+..+.. .+..++|+ +++.|+++
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~---~-~~~~~~~~~~~~~~~~~s-dg~~l~~~ 354 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT---Y-VLKVPEPLRIRYVRRGGD-TKVAFIHG 354 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS---B-EEECSCCSCEEEEEECSS-SEEEEEEE
T ss_pred eccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC---c-eEEccCCCcceEEeeeEc-CCCeEEEE
Confidence 544 23468999999 9999999988999999999875 2 233555666 88999999 99999999
Q ss_pred EcCCeEE-EEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 787 GCYETLE-LWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 787 s~dg~I~-IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+.+..|. +||+.+++...+..|...+.+++|+|||++|++++.|+.|++||
T Consensus 355 s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d 406 (1045)
T 1k32_A 355 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 406 (1045)
T ss_dssp ETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEE
Confidence 9888999 99999988777778888999999999999999999999999996
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=3.4e-20 Score=202.84 Aligned_cols=260 Identities=11% Similarity=0.100 Sum_probs=183.2
Q ss_pred CCcEEEEeC--CCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCc-eeEEeeccccceEEEEE
Q 003236 576 DKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFTGHSTTVMSLDF 648 (837)
Q Consensus 576 Dg~I~VWd~--~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~---Dg~I~IWDl~~~~~-~~~~~~~h~~~V~sl~f 648 (837)
++.|.+|++ ++++... ....+...+..++|+|+++ |++++. ++.|++||+.++.. .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 456777655 4565543 3334567788999999999 665554 68999999976543 23344557778999999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCC-Ce--eeeEEecC----------CCeeEEEEecCCCEEEEEEcCCeEEEEECC-CC
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKCQ----------SGATQMRFQPRLGRILAAAIENYISILDVE-TQ 714 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t-~~--~i~~~~~~----------~~i~sl~~sp~g~~llags~dg~I~iwDl~-s~ 714 (837)
+|+++.+++++..++.|.+|++.. +. .+..+... ..+.+++|+|+++.+++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 999987776666789999999963 33 23333221 137789999999944444457899999998 45
Q ss_pred eEE--EEEcC-CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCceeEEEeecCC------CceEEEEEeCCCCE
Q 003236 715 VCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTG------NKFHSCVFHPTFPS 782 (837)
Q Consensus 715 ~~~--~~l~~-h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~-~~~~~i~~~~~~~------~~I~sv~fspdg~~ 782 (837)
+.. ..+.. ....+..++|+|||++|+++. ++.|.+|++... .....+..+.... ..+..++|+|+|++
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ 253 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHF 253 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCE
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCE
Confidence 432 22232 234688999999999777765 789999998752 1112233333222 45888999999998
Q ss_pred EEEEE-cCCeEEEEECCCC---cEE-EeccCCCCeeEEEEeCCCCEEEEEECC-CcEEEe
Q 003236 783 LLVIG-CYETLELWNMTEN---KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW 836 (837)
Q Consensus 783 L~sgs-~dg~I~IwDl~s~---~~~-~l~~h~~~V~sla~spdg~~LaSgs~D-G~I~IW 836 (837)
|++++ .++.|.+|++... +.+ .+..+...+.+++|+|||++|++++.+ +.|.+|
T Consensus 254 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 254 LYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp EEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 86655 5789999999732 223 445566778999999999988888765 899999
No 148
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=8.1e-21 Score=205.05 Aligned_cols=268 Identities=12% Similarity=0.087 Sum_probs=202.9
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEec-CCCC-CeEEEEEcCCCCEEE-EEECCCcEEEEe
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWC 583 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~-~H~~-~V~sl~fSpdg~~La-sgs~Dg~I~VWd 583 (837)
.++++++.++.|.+|..... ..+..+. ++.. .+.+++|+|||++++ ++..++.|.+||
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 62 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC-------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence 46788888999999965322 1122232 2222 478899999998765 555678999999
Q ss_pred CCCCeEEEEecc-C----CCCeEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 584 TESFTVKSTLEE-H----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 584 ~~t~~~~~~l~~-h----~~~I~~l~fspdg~~Latgs------------~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
+.+++.+..+.. + ...+.+++|+|++++|++++ .++.|.+||+.+++. +..+.. ...+.++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITML 140 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCE
T ss_pred CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCccee
Confidence 999988876653 2 22678999999999999886 579999999987653 444443 4568889
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC----------------------
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN---------------------- 704 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg---------------------- 704 (837)
+|+|++..++++ ++.|++||+.+++.+..+........+.|+|++..+++.+..+
T Consensus 141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 999998876655 6889999999999887776544223447888888765554332
Q ss_pred --eEEEEECCCCeEE-EEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 705 --YISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 705 --~I~iwDl~s~~~~-~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
.|.+||+.+++.. ..+..+...+.+++|+|++++|+++ ++.|++||+.++ +.+..+.. ...+.+++|+|+++
T Consensus 218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~ 292 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGS 292 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSC
T ss_pred ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCC
Confidence 4789999988664 3344566788999999999999888 799999999887 55555543 35678999999999
Q ss_pred EEEEEEcCCeEEEEECCCCcEE
Q 003236 782 SLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+|++++.++.|++||+.+++.+
T Consensus 293 ~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 293 TVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEESBSSEEEEEETTTCCEE
T ss_pred EEEEEcCCCcEEEEECcCCcEE
Confidence 9999988999999999999877
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=1.2e-20 Score=205.14 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=195.0
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCC-CCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEee
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
.+++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++. +..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence 45678889999999999999999999999888876443 2578999999998665 445689999999988654 33333
Q ss_pred -cc-----ccceEEEEEcCCCCeEEEEEeC-----------CCcEEEEECCCCe---eeeEEecCCCeeEEEEecCCCEE
Q 003236 638 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGS---CAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 638 -~h-----~~~V~sl~fspdg~~llasgs~-----------Dg~I~vwDl~t~~---~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
.+ ...+.+++|+|+++.++++... ++.|.+||+.+++ .+..+.....+.+++|+|+++ +
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence 22 2347899999999877655533 4899999998844 344555566788999999999 6
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEcCCCC------------------------CEEEEEEcCCCCEEEEEe--CCeEEEEE
Q 003236 698 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS 751 (837)
Q Consensus 698 lags~dg~I~iwDl~s~~~~~~l~~h~~------------------------~V~sl~~spdg~~Lasgs--Dg~I~IwD 751 (837)
+++ ++.|.+||+.+++.+..+..+.. ...++++++++....... ...+..+|
T Consensus 162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 664 34599999999988877754320 344566766543221111 11222345
Q ss_pred cCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 752 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 752 l~s~~~~~~i~~~~~~~~~I~sv~fsp-dg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
..++. ..+..+......+..++|+| ++++++++ ++.|++||+.+++.+........+.+++|+|++++|++++.+
T Consensus 240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence 54442 12222333566788999999 99998888 889999999999887554455668899999999988888889
Q ss_pred CcEEEeC
Q 003236 831 KCVKIWK 837 (837)
Q Consensus 831 G~I~IWd 837 (837)
+.|++||
T Consensus 316 ~~v~v~d 322 (349)
T 1jmx_B 316 NDLAVFN 322 (349)
T ss_dssp SEEEEEE
T ss_pred CeEEEEe
Confidence 9999996
No 150
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=9e-21 Score=210.16 Aligned_cols=287 Identities=11% Similarity=0.072 Sum_probs=208.9
Q ss_pred EEEEecCCCCCeEE-----EEEcCCCCEEEEEEC-CC--cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC
Q 003236 547 EFQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (837)
Q Consensus 547 ~~~~l~~H~~~V~s-----l~fSpdg~~Lasgs~-Dg--~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D 618 (837)
++..+..|...+.. .+|||||++|++++. ++ .|.+||+.+++.......+...+..++|+||++.|++++.+
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~ 101 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG 101 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence 34556667666665 889999999999887 66 48889999998887777777777678899999999999999
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEE--EcCCCCeEEEEE---------------------eCCCcEEEEECCCCee
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSC 675 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~--fspdg~~llasg---------------------s~Dg~I~vwDl~t~~~ 675 (837)
+.|++||+.+++. ...+..+...+.... +++++..+++.. ..+..|++||+.+++.
T Consensus 102 ~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 102 RNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 9999999998764 444454555554444 488887655321 2346899999999987
Q ss_pred eeEEecCCCeeEEEEec-CCCEEEEEEcC------CeEEEEECCCCeEEEEEcCCC--CCEEEEEEcCCCCEEEEEe--C
Q 003236 676 AGVFKCQSGATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--D 744 (837)
Q Consensus 676 i~~~~~~~~i~sl~~sp-~g~~llags~d------g~I~iwDl~s~~~~~~l~~h~--~~V~sl~~spdg~~Lasgs--D 744 (837)
.........+..+.|+| +++.|+.+..+ ..|.++|+..+... .+..+. ..+..++|+|||+.|+..+ +
T Consensus 181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 77777777799999999 99988887763 37888888765443 333343 3578899999999776554 3
Q ss_pred C----eEEEEEcCCCCCceeEEEeecCCCc---eEEEEEeCCCCEEEEE---------EcCCeEEEEECCCCcEEEeccC
Q 003236 745 E----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVI---------GCYETLELWNMTENKTLTLSAH 808 (837)
Q Consensus 745 g----~I~IwDl~s~~~~~~i~~~~~~~~~---I~sv~fspdg~~L~sg---------s~dg~I~IwDl~s~~~~~l~~h 808 (837)
+ .|++||+.++.. ..+..+..+... ...++|+|||+.|++. ..+..|++||+.+++...+..|
T Consensus 260 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 260 GSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp TCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred CCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence 3 399999988743 233333221000 1113799999988865 3455899999999988777767
Q ss_pred CC-----------CeeEEEEeCCCCEEEEEE-CCCcEEEe
Q 003236 809 DK-----------LVSSLAASTVNGMVASAS-HDKCVKIW 836 (837)
Q Consensus 809 ~~-----------~V~sla~spdg~~LaSgs-~DG~I~IW 836 (837)
.. .+.+++|+|||+.|+.++ .+|...||
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY 378 (388)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence 66 688899999999887666 57777777
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.1e-19 Score=197.85 Aligned_cols=262 Identities=12% Similarity=0.087 Sum_probs=190.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC----CcEEEEeCCC--CeE--EEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEE
Q 003236 554 STSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW 624 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~D----g~I~VWd~~t--~~~--~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IW 624 (837)
|...+..++|+|||++|++++.+ +.|.+|++.. ++. +..+..+...+..+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66778889999999999999876 7999998765 443 3444445667788888 788877776 57899999
Q ss_pred EcCCCCcee--EE---eec--------cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee--------------ee
Q 003236 625 DTENPDYSL--RT---FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--------------AG 677 (837)
Q Consensus 625 Dl~~~~~~~--~~---~~~--------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~--------------i~ 677 (837)
++....... .. ..+ +...+.+++|+|+++.+++++..++.|++|++..... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997543211 11 111 1234588999999998887777789999999875431 11
Q ss_pred EEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE--EEEEc---CCCCCEEEEEEcCCCCEEEEEe-C--CeEE
Q 003236 678 VFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQVHSVCWNTSGEYLASVS-D--ELVR 748 (837)
Q Consensus 678 ~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~--~~~l~---~h~~~V~sl~~spdg~~Lasgs-D--g~I~ 748 (837)
.......+..++|+|+++++++++ .++.|.+||+.++.. +..+. .+...+.+++|+|||++|+++. + +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 223355688999999999988888 589999999987754 33332 2345678999999999987766 5 6899
Q ss_pred EEEcCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--ECCCCcEEEec--cCCCCeeEEEEe
Q 003236 749 VWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTLTLS--AHDKLVSSLAAS 818 (837)
Q Consensus 749 IwDl~s-~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~Iw--Dl~s~~~~~l~--~h~~~V~sla~s 818 (837)
||++.. ......+..+.. ...+..++|+|++++|++++ .++.|.+| |..++++..+. .+...+.||+|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 999962 222234555554 56788999999999999988 46788885 55677766443 345678899886
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=9.9e-20 Score=199.18 Aligned_cols=249 Identities=14% Similarity=0.161 Sum_probs=183.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEc
Q 003236 553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT 626 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~---Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl 626 (837)
.+...+..++|+|||+ |++++. ++.|++|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3446678899999999 555443 6899999997765 3445456778899999999999998888 6899999999
Q ss_pred CCCCc-e-eEEeec---------cccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeeE--Ee--cCCCeeEEEE
Q 003236 627 ENPDY-S-LRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FK--CQSGATQMRF 690 (837)
Q Consensus 627 ~~~~~-~-~~~~~~---------h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~~--~~--~~~~i~sl~~ 690 (837)
..... . +..+.. +...+.+++|+|++. ++++...++.|++||+. +++.... +. ....+..++|
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence 64322 1 222211 123488999999998 78787778999999998 5544322 22 2346788999
Q ss_pred ecCCCEEEEEE-cCCeEEEEECCC--CeE--EEEEcCCC------CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC
Q 003236 691 QPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK 757 (837)
Q Consensus 691 sp~g~~llags-~dg~I~iwDl~s--~~~--~~~l~~h~------~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~ 757 (837)
+|+++++++++ .++.|.+|++.. ++. +..+.... ..+..++|+|||++|+++. ++.|.+|++.....
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~ 274 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH 274 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence 99999777765 468999999874 443 33333332 4588999999999885544 78999999974323
Q ss_pred ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--ECCCCcEE
Q 003236 758 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTL 803 (837)
Q Consensus 758 ~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~Iw--Dl~s~~~~ 803 (837)
...+..+..+...+..++|+|++++|++++.+ +.|.+| |..++++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 35666666666778899999999999998875 799999 55667765
No 153
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.9e-19 Score=194.68 Aligned_cols=235 Identities=9% Similarity=0.086 Sum_probs=191.1
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-------CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003236 597 TQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~-------Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD 669 (837)
...+..++|+|++++|++++. ++.|.+||..+++. +..+.. ...+.+++|+|+++.+++++..++.|.+||
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 456889999999999888874 56899999998764 444442 345788999999998888888889999999
Q ss_pred CCCCeeeeEEecCC----------CeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCC
Q 003236 670 INNGSCAGVFKCQS----------GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 737 (837)
Q Consensus 670 l~t~~~i~~~~~~~----------~i~sl~~sp~g~~llags~--dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~ 737 (837)
+.+++.+..+.... .+.+++|+|+++++++++. ++.|.+||+++++.+..+..+...+.+++|+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 99999888887633 1688999999998888873 68899999999999988876666788999999999
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeec----CCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEeccCCCC
Q 003236 738 YLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKL 811 (837)
Q Consensus 738 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~----~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~~h~~~ 811 (837)
+|+++. ++.|.+||+.++ +.+..+.. +...+..++|+|+++++++++.+ +.|.+||+.+++.+.......
T Consensus 198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~- 273 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE- 273 (353)
T ss_dssp EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence 999888 899999999887 55555443 45568889999999988888765 799999999998874332222
Q ss_pred eeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003236 812 VSSLAASTVNGMVASAS-HDKCVKIWK 837 (837)
Q Consensus 812 V~sla~spdg~~LaSgs-~DG~I~IWd 837 (837)
..+++|+|+++++++++ .++.|.+||
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEE
Confidence 36799999999666555 689999996
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=5.9e-20 Score=221.06 Aligned_cols=245 Identities=14% Similarity=0.132 Sum_probs=184.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-----CeEEEEeccCCCC--------------eEEEEEcCCCC
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW--------------ITDVRFSPSLS 610 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----~~~~~~l~~h~~~--------------I~~l~fspdg~ 610 (837)
.+..|...|.+++|||||++||++ .|+.|++||+.+ ++.......+... +.+++|+|||+
T Consensus 115 ~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~ 193 (706)
T 2z3z_A 115 YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS 193 (706)
T ss_dssp EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS
T ss_pred EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC
Confidence 344567779999999999999985 689999999998 7766555444443 48999999999
Q ss_pred EEEEEe---------------------------------CCCeEEEEEcCCCCceeEEe-eccccceEEEEEcCCCCeEE
Q 003236 611 RLATSS---------------------------------ADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 611 ~Latgs---------------------------------~Dg~I~IWDl~~~~~~~~~~-~~h~~~V~sl~fspdg~~ll 656 (837)
+|++++ .+..|++||+.+++...... ..|...+.+++|+|+++.++
T Consensus 194 ~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 273 (706)
T 2z3z_A 194 CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILY 273 (706)
T ss_dssp EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEE
Confidence 999998 44789999998765322211 25677899999999998666
Q ss_pred EEEeCCC-----cEEEEECCCC-eeeeEEec--CC---CeeEEEEec--CCCEEEEEEcCCeEEEEECC-CCeEEEEEcC
Q 003236 657 CSCDNNS-----EIRYWSINNG-SCAGVFKC--QS---GATQMRFQP--RLGRILAAAIENYISILDVE-TQVCRLKLQG 722 (837)
Q Consensus 657 asgs~Dg-----~I~vwDl~t~-~~i~~~~~--~~---~i~sl~~sp--~g~~llags~dg~I~iwDl~-s~~~~~~l~~ 722 (837)
+++ .++ .|++||+.++ ........ .. .+.++.|+| ++++++++..++.+.||++. ++..+..+..
T Consensus 274 ~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~ 352 (706)
T 2z3z_A 274 VAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK 352 (706)
T ss_dssp EEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC
T ss_pred EEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC
Confidence 544 343 8999999998 44333322 11 246789999 99888888888888888876 5677777887
Q ss_pred CCCCEEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----Ce
Q 003236 723 HKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ET 791 (837)
Q Consensus 723 h~~~V~s-l~~spdg~~Lasgs--Dg----~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d----g~ 791 (837)
|...+.+ ++|+|+++.|+.++ ++ .|..||+.++. ...+. +...+.+++|+|++++|++.+.+ +.
T Consensus 353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~ 427 (706)
T 2z3z_A 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRK 427 (706)
T ss_dssp SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCE
T ss_pred CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcE
Confidence 8888877 79999999887665 44 66677776652 22222 45678999999999998877654 36
Q ss_pred EEEEECCCCc
Q 003236 792 LELWNMTENK 801 (837)
Q Consensus 792 I~IwDl~s~~ 801 (837)
|++||+.+++
T Consensus 428 i~l~d~~~~~ 437 (706)
T 2z3z_A 428 VTVTNIGKGS 437 (706)
T ss_dssp EEEEESSSCE
T ss_pred EEEEECCCCe
Confidence 9999998887
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=5.1e-19 Score=194.80 Aligned_cols=267 Identities=9% Similarity=0.079 Sum_probs=188.8
Q ss_pred CCCEEEEEE----CCCcEEEEeC--CCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCCC--Cc-e
Q 003236 566 DGKLLATGG----HDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-S 632 (837)
Q Consensus 566 dg~~Lasgs----~Dg~I~VWd~--~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~~~--~~-~ 632 (837)
...++++|+ .++.|++|++ ++++.......+...+..++|+|++++|++++.+ +.|.+|++... .. .
T Consensus 12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~ 91 (361)
T 3scy_A 12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL 91 (361)
T ss_dssp GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence 344566664 3568888865 4555443222267788899999999999999886 79999998764 21 2
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee----EEec-----------CCCeeEEEEecCCCEE
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG----VFKC-----------QSGATQMRFQPRLGRI 697 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~----~~~~-----------~~~i~sl~~sp~g~~l 697 (837)
+.....+...+..+++ ++..++++...++.|.+|++.....+. .+.. ...+.+++|+|+++++
T Consensus 92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence 2333335566778888 777777676678999999997543322 1111 1234789999999988
Q ss_pred EEEEc-CCeEEEEECCCCe-------E------EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeE
Q 003236 698 LAAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 698 lags~-dg~I~iwDl~s~~-------~------~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i 761 (837)
++++. ++.|.+|++.... . ......+...+.+++|+|||++|+++. ++.|.+||+.++.. ..+
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~ 248 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEI 248 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEe
Confidence 77775 7899999887533 1 122233556788999999999887766 78999999986521 223
Q ss_pred EEee---cCCCceEEEEEeCCCCEEEEEEcC--CeEEEEECC--CCcEE---EeccCCCCeeEEEEeCCCCEEEEEE-CC
Q 003236 762 HELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HD 830 (837)
Q Consensus 762 ~~~~---~~~~~I~sv~fspdg~~L~sgs~d--g~I~IwDl~--s~~~~---~l~~h~~~V~sla~spdg~~LaSgs-~D 830 (837)
..+. .+......++|+|+|++|+++..+ +.|.+|++. +++.. .+.. ...+.+++|+|||++|++++ .+
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 3322 233557899999999999887765 799999985 45532 2333 56788999999999888887 67
Q ss_pred CcEEEe
Q 003236 831 KCVKIW 836 (837)
Q Consensus 831 G~I~IW 836 (837)
+.|.+|
T Consensus 328 ~~v~v~ 333 (361)
T 3scy_A 328 NVIQIF 333 (361)
T ss_dssp TEEEEE
T ss_pred CCEEEE
Confidence 899996
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1.2e-19 Score=206.55 Aligned_cols=240 Identities=10% Similarity=0.090 Sum_probs=177.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-----------eEE-----EEeccCCCCeEEEEEcCCCCEEE----E
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T 614 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-----------~~~-----~~l~~h~~~I~~l~fspdg~~La----t 614 (837)
...+.++++++++.+|++++.|+ |+||+.... ... ..+ .+...|++++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34588999999999999999887 888864311 111 112 3567899999999999999 7
Q ss_pred EeCCCeEEEEEcCCC-----Cc-----eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCC
Q 003236 615 SSADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQS 683 (837)
Q Consensus 615 gs~Dg~I~IWDl~~~-----~~-----~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~ 683 (837)
++.|+.|+|||+.+. .. .+..+.+|...|.+++|+|++..+|++++.||+|++||++++..+.... +..
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~ 193 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV 193 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence 888999999998753 11 2456677999999999999866788899999999999999986654443 456
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC-------CCCEEEEEEcCCCCEEEEEe--CC------eEE
Q 003236 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-------KNQVHSVCWNTSGEYLASVS--DE------LVR 748 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h-------~~~V~sl~~spdg~~Lasgs--Dg------~I~ 748 (837)
.+.+++|+|++.+|++++.|+.|++||++ +.....+..| ...|.+++|++++.++++.+ || .++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~ 272 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV 272 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence 89999999999999999999999999998 5555555443 23799999999988887654 53 399
Q ss_pred EEEcCCCCC--ceeEEEee-------cCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEC
Q 003236 749 VWSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 797 (837)
Q Consensus 749 IwDl~s~~~--~~~i~~~~-------~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl 797 (837)
+|+++.... ......+. ........+.+.++.+.+++++... .|.|+..
T Consensus 273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 999986532 12222221 1222333444557778777776643 4555543
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=225.34 Aligned_cols=271 Identities=11% Similarity=0.061 Sum_probs=199.4
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCC---CeEEEEEcCCCCEEEEEeC---------CCeEEEEEcC
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE 627 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~---~I~~l~fspdg~~Latgs~---------Dg~I~IWDl~ 627 (837)
+++|+|||+++++ +.|+.|++||+.+++....+..|.. .|.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6899999965554 4699999999999998877766644 4899999999999999876 7899999998
Q ss_pred CCCcee-EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-------------------CCeeE
Q 003236 628 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-------------------SGATQ 687 (837)
Q Consensus 628 ~~~~~~-~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-------------------~~i~s 687 (837)
+++... ..+ ...+.+++|+|||+.++++ . ++.|++||+.++++....... ....+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 765310 222 2568899999999876654 3 789999999988765433211 11248
Q ss_pred EEEecCCCEEEEEEcCC----------------------------------eEEEEECCCCeEE---E-----EEcCCCC
Q 003236 688 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR---L-----KLQGHKN 725 (837)
Q Consensus 688 l~~sp~g~~llags~dg----------------------------------~I~iwDl~s~~~~---~-----~l~~h~~ 725 (837)
+.|+|||+.|++++.|. .|++||+.+++.. . .+.+|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999988652 7889999987642 1 1335788
Q ss_pred CEEEEEEcCCCCEEEEEe-C----CeEEEEE----cCCCCCceeEE-EeecCCCceE-----EEEEeCCCCEEEEE--Ec
Q 003236 726 QVHSVCWNTSGEYLASVS-D----ELVRVWS----IGSGSKGECIH-ELSCTGNKFH-----SCVFHPTFPSLLVI--GC 788 (837)
Q Consensus 726 ~V~sl~~spdg~~Lasgs-D----g~I~IwD----l~s~~~~~~i~-~~~~~~~~I~-----sv~fspdg~~L~sg--s~ 788 (837)
.+.+++|+||++++++.. . ..|.+|| +.++.....+. ....+...+. .++|+|||+.|+.. ..
T Consensus 254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence 899999999988777754 2 2588899 76653211111 0134555555 78999999976653 33
Q ss_pred CC--eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC-----CcEEEeC
Q 003236 789 YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK 837 (837)
Q Consensus 789 dg--~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~D-----G~I~IWd 837 (837)
++ .|++||+.+++...+..+...|..+.++ +++.|+..+.+ +.++||+
T Consensus 334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44 7888899888876777777778888888 88877776655 7788884
No 158
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=1.9e-18 Score=191.48 Aligned_cols=267 Identities=10% Similarity=0.052 Sum_probs=187.1
Q ss_pred EEEEEECC--CcEEEEeC--CCCeEEEE--ec-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCceeEEeec-c
Q 003236 569 LLATGGHD--KKAVLWCT--ESFTVKST--LE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H 639 (837)
Q Consensus 569 ~Lasgs~D--g~I~VWd~--~t~~~~~~--l~-~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~-~~~~~~~~~~~-h 639 (837)
+|++|+.. +.|.+|++ ++++.... .. .....+..++|+|++++|++++.+ .|.+|++. +++. ...... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence 45666653 46877764 45654322 21 234568899999999999999888 99999997 5543 222211 1
Q ss_pred ccceEEEEEcCCCCe-EEEEEe-------------CCCcEEEEECC-CCeeeeEEe-----cCCCeeEEEEecCCCEEEE
Q 003236 640 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-----CQSGATQMRFQPRLGRILA 699 (837)
Q Consensus 640 ~~~V~sl~fspdg~~-llasgs-------------~Dg~I~vwDl~-t~~~i~~~~-----~~~~i~sl~~sp~g~~lla 699 (837)
.+.+.+++|+|+++. ++++++ .++.+.+|++. .++....+. ....+.+++|+|+++++++
T Consensus 82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 123667899999885 344543 68999999997 466554443 3457899999999999888
Q ss_pred EEc-CCeEEEEECC-CCeEE--EEEc--CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC--CCCce---eEEEeec
Q 003236 700 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGE---CIHELSC 766 (837)
Q Consensus 700 gs~-dg~I~iwDl~-s~~~~--~~l~--~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s--~~~~~---~i~~~~~ 766 (837)
+.. ++.|.+||+. +++.. ..+. .|...+..++|+|||++|+++. ++.|.+|++.. +.... .+..+..
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 775 6799999998 66543 3343 2456799999999999988876 67999998763 32110 1112211
Q ss_pred C----CC------ceEEEE-EeCCCCEEEEEEcCC------eEEEEECC-CCcEEE----eccCCCCeeEEEEeC---CC
Q 003236 767 T----GN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN 821 (837)
Q Consensus 767 ~----~~------~I~sv~-fspdg~~L~sgs~dg------~I~IwDl~-s~~~~~----l~~h~~~V~sla~sp---dg 821 (837)
. .. .+..++ |+|||++|++++.+. .|.+|++. +++... ...+...+..++|+| ||
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 1 11 478899 999999988876533 89999996 566543 223556678899999 89
Q ss_pred CEEEEEECC-CcEEEeC
Q 003236 822 GMVASASHD-KCVKIWK 837 (837)
Q Consensus 822 ~~LaSgs~D-G~I~IWd 837 (837)
++|++++.+ +.|.||+
T Consensus 322 ~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TEEEEECSSSCEEEEEE
T ss_pred CEEEEEEcCCCeEEEEE
Confidence 999999864 8999995
No 159
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.82 E-value=2.2e-19 Score=198.79 Aligned_cols=272 Identities=12% Similarity=0.026 Sum_probs=192.3
Q ss_pred eEEEEEcCCCCEEEEEECC---CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 558 VESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
+.+++|+|||++|+.+..+ ..|++||+.+++.......+...+..+.|+||+++|+.++.++.|++||+.+++. ..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~ 116 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV 116 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence 7788999999998877543 3688899998876654443333334488999999999999999999999987653 33
Q ss_pred EeeccccceEE-------------------EEEcCCCCeEEEEE----eCCCcEEEEECCCCeeeeEEecCCCeeEEEEe
Q 003236 635 TFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQ 691 (837)
Q Consensus 635 ~~~~h~~~V~s-------------------l~fspdg~~llasg----s~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~s 691 (837)
....+...... +.|+|++..+++.. ..+..|++||+.+++..........+..+.|+
T Consensus 117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s 196 (396)
T 3c5m_A 117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR 196 (396)
T ss_dssp EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence 33333332222 34677776554332 45678999999998887777767788999999
Q ss_pred c-CCCEEEEEEcC------CeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCC
Q 003236 692 P-RLGRILAAAIE------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSK 757 (837)
Q Consensus 692 p-~g~~llags~d------g~I~iwDl~s~~~~~~l~~h-~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~ 757 (837)
| +++.|+.++.+ ..|.+||+..+......... ...+..++|+|||++|+.++ + +.|++||+.++..
T Consensus 197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN 276 (396)
T ss_dssp TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence 9 77777776653 36889998766533322211 23578899999999877665 3 3499999987632
Q ss_pred ceeEEEeecCCCceEEEEEeC-CCCEEEEEE----------------cCCeEEEEECCCCcEEEeccCCC----------
Q 003236 758 GECIHELSCTGNKFHSCVFHP-TFPSLLVIG----------------CYETLELWNMTENKTLTLSAHDK---------- 810 (837)
Q Consensus 758 ~~~i~~~~~~~~~I~sv~fsp-dg~~L~sgs----------------~dg~I~IwDl~s~~~~~l~~h~~---------- 810 (837)
..+..+. ... +.|+| +++.|++++ .+..|++||+.+++...+..+..
T Consensus 277 -~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 350 (396)
T 3c5m_A 277 -EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ 350 (396)
T ss_dssp -EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred -EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence 2222221 233 89999 999887755 23689999999887666665554
Q ss_pred -CeeEEEEeCCCCEEEEEEC-CCcEEEe
Q 003236 811 -LVSSLAASTVNGMVASASH-DKCVKIW 836 (837)
Q Consensus 811 -~V~sla~spdg~~LaSgs~-DG~I~IW 836 (837)
.+..++|+|||+.|+.++. ++...||
T Consensus 351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 351 ITHPHPSFTPNDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred CCCCCceEccCCCeEEEEecCCCCceEE
Confidence 2667899999998887764 5666665
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2.6e-18 Score=186.55 Aligned_cols=272 Identities=10% Similarity=0.069 Sum_probs=188.6
Q ss_pred ccCCCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEE-EEECCCcEE
Q 003236 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKAV 580 (837)
Q Consensus 503 ~~~~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~-~~V~sl~fSpdg~~La-sgs~Dg~I~ 580 (837)
.....++++++.++.|.+|..... ..+..+..+. ..+.+++|+|||++++ ++..++.|.
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~ 68 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 68 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred cCCCEEEEEeCCCCeEEEEECCCC-------------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEE
Confidence 445677888888999999965332 1122333222 2577899999998665 455689999
Q ss_pred EEeCCCCeEEEEeccCC------CCeEEEEEcCCCCEEEEEeCC------------CeEEEEEcCCCCc--eeEEeeccc
Q 003236 581 LWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGHS 640 (837)
Q Consensus 581 VWd~~t~~~~~~l~~h~------~~I~~l~fspdg~~Latgs~D------------g~I~IWDl~~~~~--~~~~~~~h~ 640 (837)
+||+.+++.+..+..+. ..+.+++|+|++++|++++.+ +.|.+||+.+++. .+..+. +.
T Consensus 69 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~ 147 (349)
T 1jmx_B 69 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MP 147 (349)
T ss_dssp EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CC
T ss_pred EEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CC
Confidence 99999998887775332 347899999999999999865 8999999987432 123333 34
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-------------------------CeeEEEEecCCC
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------------------------GATQMRFQPRLG 695 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-------------------------~i~sl~~sp~g~ 695 (837)
..+.+++|+|++. +++ ++ +.|++||+.+++.+..+.... ....+.+++++.
T Consensus 148 ~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 148 RQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp SSCCCEEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred CcccceeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 4689999999988 654 43 349999999998887765432 233455554432
Q ss_pred EEEEEE-cCCeEEEEECCCCeE-EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceE
Q 003236 696 RILAAA-IENYISILDVETQVC-RLKLQGHKNQVHSVCWNT-SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH 772 (837)
Q Consensus 696 ~llags-~dg~I~iwDl~s~~~-~~~l~~h~~~V~sl~~sp-dg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~ 772 (837)
...... ....+..+|..+++. ...+..+...+.+++|+| ++++|+++ ++.|++||+.++ +.+..+.. ...+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~ 298 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTYY 298 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCC
T ss_pred CCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCcc
Confidence 111100 111222355555432 222333666889999999 99999988 889999999887 55555543 34577
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
+++|+|++++|++++.++.|++||+.+++.+
T Consensus 299 ~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 299 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred ceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 8999999999999888899999999998877
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=2.6e-19 Score=216.02 Aligned_cols=274 Identities=11% Similarity=0.020 Sum_probs=189.2
Q ss_pred CeEEEEEcCCCCEEEEEEC---------CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 557 KVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~---------Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
.|.+++|||||++||+++. ++.|++||+.+++.+... .....+.+++|+|||+.|+++. |+.|++||+.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4899999999999999876 789999999998773111 1135689999999999999986 7899999998
Q ss_pred CCCceeEEeeccccce-----------------EEEEEcCCCCeEEEEEeCCC---------------------------
Q 003236 628 NPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNS--------------------------- 663 (837)
Q Consensus 628 ~~~~~~~~~~~h~~~V-----------------~sl~fspdg~~llasgs~Dg--------------------------- 663 (837)
++........++...| .+++|+|||+.++++...++
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 7664322223333322 48999999987765543321
Q ss_pred ------cEEEEECCCCeee--eEE-------ecCCCeeEEEEecCCCEEEEEEcC----CeEEEEE----CCCCeEEEEE
Q 003236 664 ------EIRYWSINNGSCA--GVF-------KCQSGATQMRFQPRLGRILAAAIE----NYISILD----VETQVCRLKL 720 (837)
Q Consensus 664 ------~I~vwDl~t~~~i--~~~-------~~~~~i~sl~~sp~g~~llags~d----g~I~iwD----l~s~~~~~~l 720 (837)
.|++||+.+++.. ..+ .+...+..++|+|++..+++.... ..|.+|| +.++++...+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7889999987753 111 123357899999996655554332 2488999 8777665444
Q ss_pred ----cCCCCCEE-----EEEEcCCCCEEEE--Ee-CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 721 ----QGHKNQVH-----SVCWNTSGEYLAS--VS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 721 ----~~h~~~V~-----sl~~spdg~~Las--gs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
..|...+. ++.|+|||+.|+. .. ++ .|.+||+.++. ...+..+...+..+.++ +++.|++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~----~~~lt~~~~~v~~~~~~-d~~~i~~~ 373 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN----AIQITSGKWEAINIFRV-TQDSLFYS 373 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT----CEECSCSSSCEEEEEEE-CSSEEEEE
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc----eEecccCceEEEEEEEE-eCCEEEEE
Confidence 35777776 8899999996554 33 55 57777776652 33444455667788877 88888888
Q ss_pred EcC-----CeEEEEECC--CC--cEEEec----cCCCCeeEEEEeCCCCEEEE-EECC--CcEEEeC
Q 003236 787 GCY-----ETLELWNMT--EN--KTLTLS----AHDKLVSSLAASTVNGMVAS-ASHD--KCVKIWK 837 (837)
Q Consensus 787 s~d-----g~I~IwDl~--s~--~~~~l~----~h~~~V~sla~spdg~~LaS-gs~D--G~I~IWd 837 (837)
+.+ +.+++|.+. ++ +...+. +|...+..+.|++++++|+. ++.+ ..+.+||
T Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 374 SNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp ESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred EecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 775 677777764 34 223332 26677889999999987664 4333 3466664
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.81 E-value=1.8e-17 Score=183.58 Aligned_cols=246 Identities=12% Similarity=0.076 Sum_probs=175.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-CCeEEEEeccC-CCCeEEEEEcCCCCE--EEEEe-------------
Q 003236 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEH-TQWITDVRFSPSLSR--LATSS------------- 616 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-t~~~~~~l~~h-~~~I~~l~fspdg~~--Latgs------------- 616 (837)
+...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 44568899999999999999888 99999997 77765433211 133667899999994 55553
Q ss_pred CCCeEEEEEcCCCCceeEEee----ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeee--EEe---cCCCee
Q 003236 617 ADRTVRVWDTENPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAG--VFK---CQSGAT 686 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~~~~~~~~----~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-t~~~i~--~~~---~~~~i~ 686 (837)
.++.+.+|++.........+. .+...+.+++|+|+|+.++++...++.|++||+. +++... .+. ....+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974322222222 2456799999999998766555457899999998 676532 333 145689
Q ss_pred EEEEecCCCEEEEEEc-CCeEEEEECC--CCeEE---EEEcC-------CCC------CEEEEE-EcCCCCEEEEEe--C
Q 003236 687 QMRFQPRLGRILAAAI-ENYISILDVE--TQVCR---LKLQG-------HKN------QVHSVC-WNTSGEYLASVS--D 744 (837)
Q Consensus 687 sl~~sp~g~~llags~-dg~I~iwDl~--s~~~~---~~l~~-------h~~------~V~sl~-~spdg~~Lasgs--D 744 (837)
.++|+|+++++++++. ++.|.+|++. +++.. ..+.. |.. .+.+++ |+|||++|+++. +
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999988876 6899999765 45442 12221 122 588999 999999888765 3
Q ss_pred C-----eEEEEEcC-CCCCceeEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CeEEEEECCCCc
Q 003236 745 E-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTENK 801 (837)
Q Consensus 745 g-----~I~IwDl~-s~~~~~~i~-~~~~~~~~I~sv~fsp---dg~~L~sgs~d-g~I~IwDl~s~~ 801 (837)
+ .|.+|++. ++. ...+. ....+......++|+| ++++|++++.+ +.|.+|++....
T Consensus 277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 3 89999996 342 12111 2333445567789999 89999999875 799999987663
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=1.3e-18 Score=204.82 Aligned_cols=229 Identities=10% Similarity=0.062 Sum_probs=177.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeeccc-cceEEEEEcCCCCeEEEEEeC---CCcEEEEECC
Q 003236 597 TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSIN 671 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~h~-~~V~sl~fspdg~~llasgs~---Dg~I~vwDl~ 671 (837)
..+|++++|+|||++||+++. ||++.||++.++. ...+..|. ..+.+++|+|+ .++++++. +....+|.+.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEe
Confidence 557999999999999999887 9999999996543 44455555 68999999998 57766664 4445555443
Q ss_pred C---CeeeeEEecCCCeeEEEEecCCCE-EEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C--
Q 003236 672 N---GSCAGVFKCQSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 744 (837)
Q Consensus 672 t---~~~i~~~~~~~~i~sl~~sp~g~~-llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D-- 744 (837)
. +... .+.....+...+|+|+++. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++ +
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence 2 2222 3333445667799999865 4455556667799999987665554333 7899999999999776 5
Q ss_pred --CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEeccCCCCeeEEE----
Q 003236 745 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA---- 816 (837)
Q Consensus 745 --g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~~l~~h~~~V~sla---- 816 (837)
..|++||+.++. . ..+..+...+..++|+|||+.|+++..++ .|++||+.+++...+..|...+..++
T Consensus 173 ~~~~i~~~d~~~g~---~-~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 173 GRVSLFTSNLSSGG---L-RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI 248 (582)
T ss_dssp TEEEEEEEETTTCC---C-EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEE
T ss_pred CCeEEEEEcCCCCC---c-eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccc
Confidence 689999998873 2 35566778899999999999999888888 89999999998876667777777777
Q ss_pred ----EeCCCCEEEEEECCCcEEEeC
Q 003236 817 ----ASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 817 ----~spdg~~LaSgs~DG~I~IWd 837 (837)
|+|||.++++++.||.++||+
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEE
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEE
Confidence 999999999999999999995
No 164
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=7.9e-18 Score=204.40 Aligned_cols=266 Identities=13% Similarity=0.075 Sum_probs=192.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC-----eEEEEEcCCCCEEEEEeCC---------CeE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV 621 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-----I~~l~fspdg~~Latgs~D---------g~I 621 (837)
....++.|+|||++|+++ |++|++||+.++++...+..|... ..++.|+|||++|++++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999998886 899999999999988888777643 2448899999999999876 566
Q ss_pred EEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-------------------
Q 003236 622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------------- 682 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~------------------- 682 (837)
.+||+.+++ ...+..|...+...+|+|||+.++++ .++.|++||+.+++........
T Consensus 95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence 799999865 44566778889999999999977654 3789999999987755432211
Q ss_pred CCeeEEEEecCCCEEEEEEcCC------------------------------------eEEEEECCC---Ce--EEEEEc
Q 003236 683 SGATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---QV--CRLKLQ 721 (837)
Q Consensus 683 ~~i~sl~~sp~g~~llags~dg------------------------------------~I~iwDl~s---~~--~~~~l~ 721 (837)
.....+.|+|||+.|+.+..|. .|.+||+.+ +. ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 1123489999999998876321 588899988 72 223333
Q ss_pred ------CCCCCEEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCC------ceeEEEeecCCCce-----EEEEEeCC
Q 003236 722 ------GHKNQVHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSK------GECIHELSCTGNKF-----HSCVFHPT 779 (837)
Q Consensus 722 ------~h~~~V~sl~~spdg~~Lasgs--D---g~I~IwDl~s~~~------~~~i~~~~~~~~~I-----~sv~fspd 779 (837)
+|...+..++|+|||++++... + ..|++||+.++.. ...+. ...+...+ ..++|+||
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcCC
Confidence 3777899999999999776654 2 2799999988741 11111 12334333 36789999
Q ss_pred CCEEE-EEEc-CC--eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003236 780 FPSLL-VIGC-YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 780 g~~L~-sgs~-dg--~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~ 829 (837)
|+.|+ ..+. +| .|++||+.+++...+......|..+.+ +|++.|+..+.
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred CCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 99877 5554 33 799999998888777766667776653 44665554443
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.78 E-value=1e-17 Score=190.66 Aligned_cols=212 Identities=14% Similarity=0.152 Sum_probs=160.0
Q ss_pred CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC---------ceeE-----Eeeccccc
Q 003236 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSLR-----TFTGHSTT 642 (837)
Q Consensus 577 g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~---------~~~~-----~~~~h~~~ 642 (837)
+.|++|+.... .+...++.+++++++.+|++++.|+ |+||+..... ..+. ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46888864311 2345689999999999999999888 8898754210 0011 11235677
Q ss_pred eEEEEEcCCCCeEEE---EEeCCCcEEEEECCCC--------eeeeEEe----cCCCeeEEEEecC-CCEEEEEEcCCeE
Q 003236 643 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SCAGVFK----CQSGATQMRFQPR-LGRILAAAIENYI 706 (837)
Q Consensus 643 V~sl~fspdg~~lla---sgs~Dg~I~vwDl~t~--------~~i~~~~----~~~~i~sl~~sp~-g~~llags~dg~I 706 (837)
|.+++|+|++..+++ +++.|+.|++||+.++ +.+..+. +...|.+++|+|+ +..|++++.|+.|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 999999999886665 7888999999998754 2222222 3567999999998 7889999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------CCceEEEEEeC
Q 003236 707 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP 778 (837)
Q Consensus 707 ~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------~~~I~sv~fsp 778 (837)
++||++++..+....+|...|++++|+|+|++|++++ |+.|++||++ + .....+..+ ...+.+++|++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~ 250 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG 250 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence 9999999987777778999999999999999999999 9999999998 3 233333322 23789999999
Q ss_pred CCCEEEEEE-cCC------eEEEEECCCC
Q 003236 779 TFPSLLVIG-CYE------TLELWNMTEN 800 (837)
Q Consensus 779 dg~~L~sgs-~dg------~I~IwDl~s~ 800 (837)
++.++++.+ .+| .+++|++...
T Consensus 251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 251 TYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceEEEEEccCCCccCCCCceEEEEeccC
Confidence 887776544 332 4999999765
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=2.8e-17 Score=196.21 Aligned_cols=281 Identities=10% Similarity=0.051 Sum_probs=197.5
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEE--ECCCcEEEEeCCCCeEEEEeccCCCCeE---------EEEEc--CCCCE-EEEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS 615 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasg--s~Dg~I~VWd~~t~~~~~~l~~h~~~I~---------~l~fs--pdg~~-Latg 615 (837)
.+.+|...|.+++|++++-++++. +.++...||....+.....+..|...+. .+.|+ ||++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 356788999999999887666666 5578899998655555666767766666 66666 99998 7766
Q ss_pred eC-CCeEEEEEcC--C-CCceeEEeec-----cccceEEEEEcCCCCeEEEEEeCC---------CcEEEEECCC-----
Q 003236 616 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINN----- 672 (837)
Q Consensus 616 s~-Dg~I~IWDl~--~-~~~~~~~~~~-----h~~~V~sl~fspdg~~llasgs~D---------g~I~vwDl~t----- 672 (837)
+. +..|++|++. . +. ...+.. |...+.+++|+|||+.++++.... ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 54 5667777765 2 33 344444 667889999999998776555321 5899999988
Q ss_pred -CeeeeEE-ecCCCeeEEEEecCCCEEEEEEcC--------CeEEEEECC-CC---eEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 673 -GSCAGVF-KCQSGATQMRFQPRLGRILAAAIE--------NYISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 673 -~~~i~~~-~~~~~i~sl~~sp~g~~llags~d--------g~I~iwDl~-s~---~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
++..... .....+..++|+|||++|+.++.+ ..|++||+. ++ .......+|...+..++|+|||++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 5554444 344567789999999999988865 379999999 56 444444556788999999999997
Q ss_pred EEEEe-CC--eEEEEEcCCCCCceeEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEe
Q 003236 739 LASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 805 (837)
Q Consensus 739 Lasgs-Dg--~I~IwDl~s~~~~~~i~~~~~~~~~--------I~sv~fspdg~~L~sgs~dg~I~Iw--Dl~s~~~~~l 805 (837)
++++. ++ .|.+||+.++ ........+... +..++|++++..++++.. +.++|| |+.+++...+
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA 331 (662)
T ss_dssp EEEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred EEEECCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence 77776 77 5666666554 222222222111 467899999998888888 877777 7777777677
Q ss_pred ccCCCCeeEE-EEeCCCCEEEEEECCCcEEEe
Q 003236 806 SAHDKLVSSL-AASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 806 ~~h~~~V~sl-a~spdg~~LaSgs~DG~I~IW 836 (837)
..|...+..+ +++.+.-++++++.+....||
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence 7787788877 554433344455566555554
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=1.8e-16 Score=175.86 Aligned_cols=262 Identities=10% Similarity=0.103 Sum_probs=193.0
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEEC----------CCcEEEEeCCCCeEEEEeccC------CCCeEEEEEcCCCCEEE
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLA 613 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~----------Dg~I~VWd~~t~~~~~~l~~h------~~~I~~l~fspdg~~La 613 (837)
.+..+..+ .++|+|||++|+++.. ++.|.+||..+++.+..+... ......++|+|||++|+
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~ 123 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV 123 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence 44455444 8999999999998863 678999999999888877532 34577899999999999
Q ss_pred EEeC--CCeEEEEEcCCCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEE------ecCC
Q 003236 614 TSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF------KCQS 683 (837)
Q Consensus 614 tgs~--Dg~I~IWDl~~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~------~~~~ 683 (837)
++.. +++|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++..... ....
T Consensus 124 v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~ 200 (361)
T 2oiz_A 124 LQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD 200 (361)
T ss_dssp EEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred EECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence 9874 58999999998653 444 33 22 2234667888766777888899999999865 5544222 1222
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC------CC----CCEEEEEEcCCCCEEEEEe--------
Q 003236 684 GATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG------HK----NQVHSVCWNTSGEYLASVS-------- 743 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg~I~iwDl~s~~--~~~~l~~------h~----~~V~sl~~spdg~~Lasgs-------- 743 (837)
....+.+++++..++..+.++.|.++|+.... .+..+.. +. .....++|+|++..++++.
T Consensus 201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~ 280 (361)
T 2oiz_A 201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT 280 (361)
T ss_dssp SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence 22334456777788888889999999987543 2222211 11 1111378999988777653
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC--cEEEe-ccCCCCeeEEE
Q 003236 744 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN--KTLTL-SAHDKLVSSLA 816 (837)
Q Consensus 744 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~--~~~~l-~~h~~~V~sla 816 (837)
.+.|.+||+.+. +.+..+..+. ...++|+|+|++|++++. +.|.+||..++ +.+.. ..+......++
T Consensus 281 ~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~ 354 (361)
T 2oiz_A 281 HKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQ 354 (361)
T ss_dssp TTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred ccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence 237999999987 7788877766 999999999999998886 99999999999 88854 57888899999
Q ss_pred EeCCCC
Q 003236 817 ASTVNG 822 (837)
Q Consensus 817 ~spdg~ 822 (837)
++|+|+
T Consensus 355 ~~p~G~ 360 (361)
T 2oiz_A 355 FHPVGG 360 (361)
T ss_dssp ECCCSC
T ss_pred ecCCCC
Confidence 999985
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.76 E-value=1.1e-16 Score=194.48 Aligned_cols=295 Identities=14% Similarity=0.089 Sum_probs=197.5
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCC-----eEEEEEcCCCCEEEEEECC-----
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD----- 576 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~-----V~sl~fSpdg~~Lasgs~D----- 576 (837)
.+++++ |++|.+|....+. +...+.+|... ...++|||||++|++++.+
T Consensus 29 ~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 29 EYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp EEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred cEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 566665 7888888654331 12334555432 3458899999999998876
Q ss_pred ----CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccce---------
Q 003236 577 ----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--------- 643 (837)
Q Consensus 577 ----g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V--------- 643 (837)
+.+.+||+.+++.. .+..|...+..++|+|||+.||.++ |+.|++||+.++.....+..++...+
T Consensus 88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 56679999998765 4667888999999999999999884 78999999988764333333433323
Q ss_pred --------EEEEEcCCCCeEEEEEeCCC-----------------------------------cEEEEECCC---Ce---
Q 003236 644 --------MSLDFHPSKEDLLCSCDNNS-----------------------------------EIRYWSINN---GS--- 674 (837)
Q Consensus 644 --------~sl~fspdg~~llasgs~Dg-----------------------------------~I~vwDl~t---~~--- 674 (837)
..+.|+|||+.+++....++ .|++||+.+ ++
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 35899999997776543222 588899988 73
Q ss_pred eeeEEe------cCCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe----EEE--EE--cCCCCCEE-----EEE
Q 003236 675 CAGVFK------CQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV----CRL--KL--QGHKNQVH-----SVC 731 (837)
Q Consensus 675 ~i~~~~------~~~~i~sl~~sp~g~~llags~d----g~I~iwDl~s~~----~~~--~l--~~h~~~V~-----sl~ 731 (837)
...... ....+..+.|+|+++.++..... ..|.+||+.+++ +.. .+ ..|...|. .+.
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence 332221 22347889999999866655442 379999998876 221 11 34665554 789
Q ss_pred EcCCCCEEE-EEe--CC--eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-------CeEEEEECCC
Q 003236 732 WNTSGEYLA-SVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-------ETLELWNMTE 799 (837)
Q Consensus 732 ~spdg~~La-sgs--Dg--~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-------g~I~IwDl~s 799 (837)
|+|||+.|+ ..+ +| .|++||+.++. .. .+......+..+.. ++++.|+..+.. ..|+..++.+
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~---~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKD---CT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSS---CE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCc---eE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 999999877 665 44 78889987652 22 33333445555442 447777766654 2566666666
Q ss_pred CcEE-Eecc----CCCCeeEEEEeCCCCEEEEEEC
Q 003236 800 NKTL-TLSA----HDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 800 ~~~~-~l~~----h~~~V~sla~spdg~~LaSgs~ 829 (837)
+... .+.. ....+..+.|+|++++++....
T Consensus 401 ~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS 435 (740)
T ss_dssp EEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred CCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence 5543 3321 2467889999999997765543
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=1.6e-16 Score=176.32 Aligned_cols=263 Identities=8% Similarity=0.051 Sum_probs=189.5
Q ss_pred CCCEEEEEE------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCC
Q 003236 566 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP 629 (837)
Q Consensus 566 dg~~Lasgs------~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~----------Dg~I~IWDl~~~ 629 (837)
+++++++.. .|+.|++||..+++.+..+..+..+ .++|+||+++|++++. ++.|.+||+.+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556665543 3779999999999999888776555 8999999999999873 678999999876
Q ss_pred CceeEEeec------cccceEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeE-EecCCCeeEEEEecCC-CEEEEE
Q 003236 630 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRILAA 700 (837)
Q Consensus 630 ~~~~~~~~~------h~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~-~~~~~~i~sl~~sp~g-~~llag 700 (837)
+. +..+.. +......++|+|++++++++... ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.
T Consensus 92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-TEEEEEECTTSSSEEEEE
T ss_pred cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-CcceeEEcCCCCeeEEEE
Confidence 54 444432 23457789999999977766554 68999999999988877 6543 33335677765 577888
Q ss_pred EcCCeEEEEECCC-CeEEEEE------cCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC----
Q 003236 701 AIENYISILDVET-QVCRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---- 768 (837)
Q Consensus 701 s~dg~I~iwDl~s-~~~~~~l------~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~---- 768 (837)
+.||.+.+|++.. ++..... ..+..++ .+.+++++..++..+ ++.|.++|+..... ..+..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDK 247 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCcccc
Confidence 8999999999865 5444221 1122222 334467777777667 88999999976532 2222221100
Q ss_pred ------CceEEEEEeCCCCEEEEEEc-----------CCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003236 769 ------NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 769 ------~~I~sv~fspdg~~L~sgs~-----------dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~D 830 (837)
.....++|+|++..++++.. .+.|.+||+.+++.+ ++..+. +.+|+|+|||++|++++.
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence 11113689999998888764 348999999999988 455555 999999999999998887
Q ss_pred CcEEEeC
Q 003236 831 KCVKIWK 837 (837)
Q Consensus 831 G~I~IWd 837 (837)
+.|.|||
T Consensus 325 ~~v~v~D 331 (361)
T 2oiz_A 325 GNVNVYD 331 (361)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 9999997
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.75 E-value=3.6e-16 Score=170.40 Aligned_cols=252 Identities=11% Similarity=0.101 Sum_probs=178.6
Q ss_pred CeEEEEEcCCCCEEEEEE---------CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC---C--eEE
Q 003236 557 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVR 622 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs---------~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D---g--~I~ 622 (837)
.|..+++ ||++||... .++.|++||+.+++... + ..+.+++|+|||++|+.++.+ + .|+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 4667777 888887652 25679999999876543 3 568899999999999988754 3 477
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC--------------------------CCcEEEEECCCCeee
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCA 676 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~--------------------------Dg~I~vwDl~t~~~i 676 (837)
+||+.+++. ..+..+.. +.+++|+|++..+++++.. ...|++||+.+++.+
T Consensus 89 ~~~~~~g~~--~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 89 VADLETLSS--KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEETTTTEE--EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEECCCCce--EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888876542 33333334 9999999999877766532 257999999998874
Q ss_pred eEEecCCCeeEEEEecCCCEEEEEEcCC---------eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C--
Q 003236 677 GVFKCQSGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-- 744 (837)
Q Consensus 677 ~~~~~~~~i~sl~~sp~g~~llags~dg---------~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D-- 744 (837)
..+... .+..+.|+|++ .++++..+. .|.++| +++.. .+..+ ..+..+ +|||++|+.++ +
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 444434 88899999998 666665432 455556 55443 33334 455544 99999887766 3
Q ss_pred ------CeEEEEEcCCCCCceeEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeEEEE
Q 003236 745 ------ELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 817 (837)
Q Consensus 745 ------g~I~IwDl~s~~~~~~i~~~~~~~~~I~s-v~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~sla~ 817 (837)
..|.+|| ++ ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|
T Consensus 238 ~~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~ 309 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDV 309 (347)
T ss_dssp SCCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEE
T ss_pred CCccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeee
Confidence 2577777 33 333333445567776 8999 88 88888889999999 877777666677888999999
Q ss_pred eCCCCEEEEEECCCcE-EEe
Q 003236 818 STVNGMVASASHDKCV-KIW 836 (837)
Q Consensus 818 spdg~~LaSgs~DG~I-~IW 836 (837)
++ .++++++.++.. .||
T Consensus 310 s~--~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 310 DE--IVVYLKETATRLRELF 327 (347)
T ss_dssp SS--SEEEEEECSSSCCEEE
T ss_pred eC--cEEEEEcCCCChHHhe
Confidence 99 677777777654 555
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=7.2e-16 Score=168.29 Aligned_cols=240 Identities=15% Similarity=0.114 Sum_probs=181.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECC------------------------CcEEEEeCCCCeEEEEec-cCCCCeEEEEEcCCC
Q 003236 555 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL 609 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~D------------------------g~I~VWd~~t~~~~~~l~-~h~~~I~~l~fspdg 609 (837)
-+.|.+|+++++|+++++...+ ++|.+||..+++.+..+. .+-..+..|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3569999999999999888777 479999999888887664 445678999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEe---------eccccceEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeeeeEE
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF 679 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~---------~~h~~~V~sl~fspdg~~llasgs-~Dg~I~vwDl~t~~~i~~~ 679 (837)
+++++...++.|++||.......+..+ .++-....+++++|++..++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999987543234444 234457899999994455666775 689999999 557776666
Q ss_pred ecC-----------CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEE---
Q 003236 680 KCQ-----------SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV--- 742 (837)
Q Consensus 680 ~~~-----------~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spdg~~Lasg--- 742 (837)
... .....++++|+++.++++. .++.|.+||..+++.+..+. .+...+.+++|+| +..+++.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 431 2378999999955555554 57899999999888888874 4567889999999 3333332
Q ss_pred ----e-CCeEEEEEcCCCCCceeEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 743 ----S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 743 ----s-Dg~I~IwDl~s~~~~~~i~~~---~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
. +..|++||+.++ ..+..+ ..+......++++|+|..+++...++.|++|++..
T Consensus 261 ~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 2 348999999887 555555 35566789999999996666666678999999754
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=7.3e-16 Score=167.31 Aligned_cols=267 Identities=8% Similarity=0.044 Sum_probs=191.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
..|.+++|++++..++..+.++.+++| .++....+..+...+.+++|++++++++++..++.|.+||..++.. ...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence 347888999988887777888999999 3456667777778889999999999888888899999999987653 333
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeeEEe---cCCCeeEEEEecCCCEEEEEEc------
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK---CQSGATQMRFQPRLGRILAAAI------ 702 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~D----g~I~vwDl~t~~~i~~~~---~~~~i~sl~~sp~g~~llags~------ 702 (837)
...+...+.+++|++++. +++++..+ +.|.+||..++.....+. ....+..++++|++..+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~ 160 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP 160 (333)
T ss_dssp EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence 335667899999999976 55555545 689999998877653332 2346889999999876665543
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCC-CCCceeE-----EEeecCCCceEEE
Q 003236 703 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECI-----HELSCTGNKFHSC 774 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s-~~~~~~i-----~~~~~~~~~I~sv 774 (837)
.+.|..||..+++..... .+...+.+++|+|++++|+++. ++.|.+||+.+ +.....+ ..+.. ...+..+
T Consensus 161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i 238 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC 238 (333)
T ss_dssp CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence 356777777665443322 2334688999999998665554 78999999964 2211111 11111 1467889
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCC------CeeEEEEeCCCCEEEEEECC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK------LVSSLAASTVNGMVASASHD 830 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~------~V~sla~spdg~~LaSgs~D 830 (837)
+++++|..+++...++.|.+||.. ++.+ .+..+.. .+.+++|++|++.|+.++.+
T Consensus 239 ~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 239 CIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 999999877776677899999985 4444 4433332 68999999998777666555
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.73 E-value=1.4e-14 Score=169.89 Aligned_cols=308 Identities=10% Similarity=0.020 Sum_probs=220.9
Q ss_pred CeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC-
Q 003236 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE- 585 (837)
Q Consensus 507 ~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~- 585 (837)
.++++...++.|.+++.... ..+..+... ..+.++.|+|||++|++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~-------------------~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC-------------------CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCC-------------------eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 45566666777777754322 122233322 246789999999999999999999999995
Q ss_pred -CCeEEEEeccCCCCeEEEEEc----CCCCEEEEEeC-CCeEEEEEcCCCCceeEEeec----------cc-cceEEEEE
Q 003236 586 -SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSLDF 648 (837)
Q Consensus 586 -t~~~~~~l~~h~~~I~~l~fs----pdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~----------h~-~~V~sl~f 648 (837)
+++.+..+.... ....++|+ |||++++++++ ++.|.|+|..+.+. +..+.. |. ..+..+.+
T Consensus 228 ~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 228 KEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEE
Confidence 888888886543 46799999 69999888776 58999999888664 433321 21 26788999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeee--eEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcC---
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG--- 722 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t~~~i--~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~--- 722 (837)
++++..+++....+|.|.++|....+.. ..+........+.|+|+++++++++. ++.|.++|+.+++.+..+..
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~ 385 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 385 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence 9988888888888899999999876433 33334456778999999999988775 68999999999988776653
Q ss_pred --CCCCEEEEEEcCCC-CEEEEEe--CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEc-----
Q 003236 723 --HKNQVHSVCWNTSG-EYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC----- 788 (837)
Q Consensus 723 --h~~~V~sl~~spdg-~~Lasgs--Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~----- 788 (837)
|.+....+ ++|++ .+++++. ++.|.|+|..+... .+.+.++...+..-..+.++|+++++++...
T Consensus 386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 33222222 57874 4455554 68999999987321 3567777665444455778999999998773
Q ss_pred --CCeEEEEECCCC-----c-E-EEec--------cCCCCeeEEEEeCCCCEEEEEEC-----CCcEEEeC
Q 003236 789 --YETLELWNMTEN-----K-T-LTLS--------AHDKLVSSLAASTVNGMVASASH-----DKCVKIWK 837 (837)
Q Consensus 789 --dg~I~IwDl~s~-----~-~-~~l~--------~h~~~V~sla~spdg~~LaSgs~-----DG~I~IWd 837 (837)
.+.|.+||+.+. . . ..+. .....+..+.|+++|+++..+.. ++.|.|+|
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 359999999876 2 1 1121 12457899999999997776632 68888875
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=4.7e-15 Score=157.39 Aligned_cols=237 Identities=10% Similarity=0.154 Sum_probs=175.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec------cCCCCeEEEEE-cCCCCEEEEEeC-CCeEEEE
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRVW 624 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~------~h~~~I~~l~f-spdg~~Latgs~-Dg~I~IW 624 (837)
+|-..+.+++++++|+++++...++.|.+||.. ++.+..+. .+...+.++++ .+++.++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999977 56666553 24467899999 466766666543 8899999
Q ss_pred EcCCCCceeEEee-ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEEE
Q 003236 625 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 625 Dl~~~~~~~~~~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g~~llag 700 (837)
|.. ++. +..+. .+...+.++++++++. ++++...++.|++||.. ++.+..+.. ...+..+++++++..+++.
T Consensus 106 d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 106 NQY-GQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp CTT-SCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred CCC-CcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 943 443 44443 3446789999999976 66677778899999965 555655542 2458899999998766655
Q ss_pred EcCCeEEEEECCCCeEEEEEcCC--CCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCceeEEEeecCC--CceEEE
Q 003236 701 AIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHSC 774 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l~~h--~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~s~~~~~~i~~~~~~~--~~I~sv 774 (837)
..++.|.+||.. +..+..+..+ ...+.+|+++++|.++++.. ++ .|.+||.. + ..+..+..+. ..+..+
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCcceeE
Confidence 668999999985 4555566433 36789999999999888887 65 99999954 3 3444444433 347899
Q ss_pred EEeCCCCEEEEEEcCCeEEEEECCCC
Q 003236 775 VFHPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 775 ~fspdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
+++|++..+++ +.++.|++|++...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EECCCCcEEEE-CCCCeEEEEEcccc
Confidence 99999975544 77899999997653
No 175
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=6.9e-16 Score=170.74 Aligned_cols=244 Identities=11% Similarity=0.107 Sum_probs=168.6
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEE--EcCCCCEEEEE------------
Q 003236 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATS------------ 615 (837)
Q Consensus 550 ~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~--fspdg~~Latg------------ 615 (837)
...+|...+.+++|+|||+.|++++.++.|++||+.+++....+..+...+.... +++++++++..
T Consensus 75 lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~ 154 (388)
T 3pe7_A 75 LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD 154 (388)
T ss_dssp CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccc
Confidence 3445666666788999999999999999999999999988777766666665444 48899988743
Q ss_pred ----------eCCCeEEEEEcCCCCceeEEeeccccceEEEEEcC-CCCeEEEEEeC-----CCcEEEEECCCCeeeeEE
Q 003236 616 ----------SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGVF 679 (837)
Q Consensus 616 ----------s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fsp-dg~~llasgs~-----Dg~I~vwDl~t~~~i~~~ 679 (837)
..+..|++||+.+++ ...+..+...+..+.|+| ++..++++... ...|+++|+..+......
T Consensus 155 ~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 232 (388)
T 3pe7_A 155 WKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK 232 (388)
T ss_dssp HHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC
T ss_pred cchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee
Confidence 244789999999865 455556677899999999 88766655542 347888998766544433
Q ss_pred ecCC--CeeEEEEecCCCEEEEEEc-CC----eEEEEECCCCeEE--EEEcCCCCC---EEEEEEcCCCCEEEEE-----
Q 003236 680 KCQS--GATQMRFQPRLGRILAAAI-EN----YISILDVETQVCR--LKLQGHKNQ---VHSVCWNTSGEYLASV----- 742 (837)
Q Consensus 680 ~~~~--~i~sl~~sp~g~~llags~-dg----~I~iwDl~s~~~~--~~l~~h~~~---V~sl~~spdg~~Lasg----- 742 (837)
.... .+..+.|+|+++.|+..+. ++ .|++||+.+++.. ..+.++... +..++|+|||+.|+..
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 312 (388)
T 3pe7_A 233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDS 312 (388)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------
T ss_pred eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecc
Confidence 3332 3677899999998766554 22 3999999988643 333321100 1123799999987753
Q ss_pred ----e-CCeEEEEEcCCCCCceeEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-CC--eEEEEECCC
Q 003236 743 ----S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC-YE--TLELWNMTE 799 (837)
Q Consensus 743 ----s-Dg~I~IwDl~s~~~~~~i~~~~~~~~-----------~I~sv~fspdg~~L~sgs~-dg--~I~IwDl~s 799 (837)
. +..|++||+.++. +..+..+.. .+..++|+|||+.|++++. ++ .|+++++..
T Consensus 313 ~~~~~~~~~i~~~d~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 313 GYKIENDPFLYVFNMKNGT----QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp ----CCCCEEEEEETTTTE----EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred ccccCCCCEEEEEeccCCc----eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 2 5589999998862 233444444 4778899999998887775 45 455555543
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=8.2e-15 Score=155.56 Aligned_cols=234 Identities=12% Similarity=0.125 Sum_probs=172.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee------ccccceEEEEEcCCCCeEEEEEeC-CCcEEE
Q 003236 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDN-NSEIRY 667 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~------~h~~~V~sl~fspdg~~llasgs~-Dg~I~v 667 (837)
++-..+.++++++++.++++...++.|.+||... +. +..+. ++...+.++++++.+..++++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~-~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cE-EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4556789999999999888888899999999873 32 34332 244578899995333456655543 789999
Q ss_pred EECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEEe
Q 003236 668 WSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 668 wDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spdg~~Lasgs 743 (837)
|| .+++.+..+.. ...+..+++++++..+++...++.|.+||.. ++.+..+. .+...+.+|+++++++++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 56777666643 2468899999998866666667899999965 45555553 3556789999999999877776
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-eEEEEECCCCcEEEeccCC--CCeeEEEE
Q 003236 744 -DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLAA 817 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~s~~~~~l~~h~--~~V~sla~ 817 (837)
++.|++||... ..+..+... ...+..++++++|..+++...++ .|.+||........+..+. ..+.++++
T Consensus 183 ~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 183 RAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEE
Confidence 88999999743 344455433 25789999999998777776675 9999996544333444333 34789999
Q ss_pred eCCCCEEEEEECCCcEEEeC
Q 003236 818 STVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 818 spdg~~LaSgs~DG~I~IWd 837 (837)
+++|+++++ +.|+.|+||+
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEE
T ss_pred CCCCcEEEE-CCCCeEEEEE
Confidence 999987777 6799999995
No 177
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=9.8e-14 Score=146.98 Aligned_cols=274 Identities=8% Similarity=-0.035 Sum_probs=194.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
+..+...+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++++++.++++...++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44566789999999999987776667899999988 55443 223355789999999999988877778899999986 3
Q ss_pred CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
......+......+.++++++++. ++++...++.|.+||. +++...... ....+..+++.+++..+++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 322222223456789999999875 5656666789999998 555443221 234688999999987666555678999
Q ss_pred EEECCCCeEEEE-EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 708 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 708 iwDl~s~~~~~~-l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
+||. +++.... +..+...+.++++++++.++++.. ++.|.+||. ++.. ...........+..++++++|..+++
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~~~~~~~~~~~~~~i~~~~~g~l~v~ 241 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--TEFKIPTPNARPHAITAGAGIDLWFT 241 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--EEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--EEEECCCCCCCceeEEECCCCCEEEe
Confidence 9999 6654432 333456789999999999777765 789999998 5421 11223334567899999999984444
Q ss_pred EEcCCeEEEEECCCCcEEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 786 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 786 gs~dg~I~IwDl~s~~~~~l--~~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
...++.|.+||. ++....+ ..+...+.++++ +++.++++.+.++.++
T Consensus 242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK 290 (299)
T ss_dssp ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence 446789999998 4554433 345578999999 8888777765444443
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=7.5e-16 Score=183.75 Aligned_cols=239 Identities=10% Similarity=0.072 Sum_probs=165.6
Q ss_pred EEEEc--CCCCE-EEEEEC-CCcEEEEeCC--CCeEEEEecc-----CCCCeEEEEEcCCCCEEEEEeCC----------
Q 003236 560 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--SFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD---------- 618 (837)
Q Consensus 560 sl~fS--pdg~~-Lasgs~-Dg~I~VWd~~--t~~~~~~l~~-----h~~~I~~l~fspdg~~Latgs~D---------- 618 (837)
.+.|+ |||++ |+.++. +..|++|++. .......+.. |...+.+++|+|||+.|++++.|
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 55565 99998 776654 5667777765 2033445555 67789999999999999999877
Q ss_pred CeEEEEEcCC------CCceeEEee-ccccceEEEEEcCCCCeEEEEEeCC-------CcEEEEECC-CC---eeeeEEe
Q 003236 619 RTVRVWDTEN------PDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVFK 680 (837)
Q Consensus 619 g~I~IWDl~~------~~~~~~~~~-~h~~~V~sl~fspdg~~llasgs~D-------g~I~vwDl~-t~---~~i~~~~ 680 (837)
..|++||+.+ +. ...+. .+...+..++|+|||+.+++++... ..|++||+. ++ +......
T Consensus 161 ~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5899999987 33 34555 5667888999999998776555432 479999999 56 4444444
Q ss_pred c-CCCeeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEEcCCCCC--------EEEEEEcCCCCEEEEEeCCeEEE
Q 003236 681 C-QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQ--------VHSVCWNTSGEYLASVSDELVRV 749 (837)
Q Consensus 681 ~-~~~i~sl~~sp~g~~llags~dg--~I~iwDl~s~~~~~~l~~h~~~--------V~sl~~spdg~~LasgsDg~I~I 749 (837)
. ...+..+.|+|+++.++++..++ .|.+||+.+++.......+... +.+++|++++.+++++.++.++|
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVL 318 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEE
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEE
Confidence 3 46789999999999666666677 6777787777655443333222 56789999999988877677788
Q ss_pred E--EcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE--EEEcCC--eEEEEECCCCcEEEe
Q 003236 750 W--SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL--VIGCYE--TLELWNMTENKTLTL 805 (837)
Q Consensus 750 w--Dl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~--sgs~dg--~I~IwDl~s~~~~~l 805 (837)
| |+.++ .+..+..+...+..+. ++++..++ +++.+. .|++||+.+++...+
T Consensus 319 ~~~d~~~~----~~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 319 GILDPESG----ELVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEETTTT----EEEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred EEEECCCC----cEEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 8 54443 3566666666777661 44444433 333333 677778888876654
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=5.4e-15 Score=161.30 Aligned_cols=234 Identities=10% Similarity=0.068 Sum_probs=173.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC------------------------CeEEEEEcCCCCceeEEee-ccccceEEEEEcCC
Q 003236 597 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS 651 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~D------------------------g~I~IWDl~~~~~~~~~~~-~h~~~V~sl~fspd 651 (837)
-+.|.+|+++++|+++++.+.+ ++|.+||..+++. +..+. ++-..+..++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence 3579999999999988888777 4799999987765 33332 44567899999999
Q ss_pred CCeEEEEEeCCCcEEEEECCCCe-eeeEEec----------CCCeeEEEEec-CCCEEEEEE-cCCeEEEEECCCCeEEE
Q 003236 652 KEDLLCSCDNNSEIRYWSINNGS-CAGVFKC----------QSGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL 718 (837)
Q Consensus 652 g~~llasgs~Dg~I~vwDl~t~~-~i~~~~~----------~~~i~sl~~sp-~g~~llags-~dg~I~iwDl~s~~~~~ 718 (837)
+. ++++...++.|++||..... .+..+.. ......++++| ++..+++.+ .++.|++|| .++..+.
T Consensus 102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~ 179 (329)
T 3fvz_A 102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT 179 (329)
T ss_dssp SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence 87 77777778999999986542 4444421 12478999999 556555554 589999999 5566666
Q ss_pred EEcCC----------CCCEEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCceeEEEee--cCCCceEEEEEeCCCCEEE
Q 003236 719 KLQGH----------KNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 719 ~l~~h----------~~~V~sl~~spd-g~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~--~~~~~I~sv~fspdg~~L~ 784 (837)
.+... -..+.+|+++|+ +.++++.. ++.|++||..++ +.+..+. .+...+..++|+| +..++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence 66422 234899999999 56555555 889999999866 4555553 4556788999999 32222
Q ss_pred EE-------EcCCeEEEEECCCCcEEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 785 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 785 sg-------s~dg~I~IwDl~s~~~~~l----~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
+. ..+..|++||+.+++.+.. ..+...+.+|+++++|.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 22 2234899999999998854 35777899999999998888888899999985
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=5.1e-14 Score=152.72 Aligned_cols=244 Identities=13% Similarity=0.117 Sum_probs=176.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC----CeEEE
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRV 623 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D----g~I~I 623 (837)
+..+..+...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++|+++++++++...+ +.|.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 37 WLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred eEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 44566777788999999999988888889999999998887766554567789999999999888877666 68999
Q ss_pred EEcCCCCceeEEee--ccccceEEEEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCC
Q 003236 624 WDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 624 WDl~~~~~~~~~~~--~h~~~V~sl~fspdg~~llasgs~------Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~ 695 (837)
||..+.... ..+. .+...+.+++++|++. ++++... .+.|+.||..+++..........+..++|+|+++
T Consensus 117 ~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 117 ATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEK 194 (333)
T ss_dssp ECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSS
T ss_pred EeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCC
Confidence 999876542 1222 2446789999999986 4444432 3567777776665554444445678999999998
Q ss_pred EEEEEE-cCCeEEEEECCC-CeEEE--------EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe
Q 003236 696 RILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL 764 (837)
Q Consensus 696 ~llags-~dg~I~iwDl~s-~~~~~--------~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~ 764 (837)
.++++. .++.|.+||+.+ +..+. .+.++ ..+..++++++|.++++.. ++.|.+||.. + ..+..+
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~~ 269 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQI 269 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEEE
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEEE
Confidence 776665 478999999963 22111 11222 4678899999999888776 7899999984 3 344444
Q ss_pred ecCCC------ceEEEEEeCCCCEEEEEEcCC------eEEEEECC
Q 003236 765 SCTGN------KFHSCVFHPTFPSLLVIGCYE------TLELWNMT 798 (837)
Q Consensus 765 ~~~~~------~I~sv~fspdg~~L~sgs~dg------~I~IwDl~ 798 (837)
..... .+.+++|++++..|++++.++ .|+.+++.
T Consensus 270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp ECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 43332 588999999988888777764 45555543
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=1.7e-14 Score=154.09 Aligned_cols=243 Identities=9% Similarity=0.058 Sum_probs=179.0
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
..+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34446667788999999998 7888888999999999887 55666677889999999999988777777899999997
Q ss_pred CCCceeEEeec----cccceEEEEEcCCCCeEEEE----Ee-------------CCCcEEEEECCCCeeeeEEecCCCee
Q 003236 628 NPDYSLRTFTG----HSTTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFKCQSGAT 686 (837)
Q Consensus 628 ~~~~~~~~~~~----h~~~V~sl~fspdg~~llas----gs-------------~Dg~I~vwDl~t~~~i~~~~~~~~i~ 686 (837)
+++... .... ....+.+++++|+|. ++++ +. ..+.|+.++.. ++............
T Consensus 99 ~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~ 175 (296)
T 3e5z_A 99 GGEWES-IADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN 175 (296)
T ss_dssp TCCEEE-EECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred CCcEEE-EeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence 766322 1111 123567899999986 5555 22 13466667666 55444444445678
Q ss_pred EEEEecCCCEEEEEEcCCeEEEEECC-CCeE---EEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEE
Q 003236 687 QMRFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH 762 (837)
Q Consensus 687 sl~~sp~g~~llags~dg~I~iwDl~-s~~~---~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~ 762 (837)
.++|+|+++.+++.+.++.|.+||+. ++.. ...+..+...+.+++++++|+++++. ++.|.+||.. + ..+.
T Consensus 176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~ 250 (296)
T 3e5z_A 176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELG 250 (296)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEE
T ss_pred cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEE
Confidence 99999999988555567899999987 4544 33333355667889999999987777 8899999986 3 4566
Q ss_pred EeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 763 ELSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 763 ~~~~~~~~I~sv~f-spdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
.+..+.. +.+++| .++++.|++++.+ .|..++..+.++.
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 6666666 889999 5898988888875 5667777766543
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.68 E-value=6.3e-15 Score=177.95 Aligned_cols=244 Identities=8% Similarity=-0.021 Sum_probs=175.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCC-----cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe--------
Q 003236 554 STSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 620 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~-------- 620 (837)
|...+.+++|||||++||.+..++ .|++||+.+++.......+ ..+.+++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999999876543 8999999999887643222 23678999999999999988766
Q ss_pred --------EEEEEcCCCCce-eEEee--ccccceEEEEEcCCCCeEEEEEeC----CCcEEEEECCC------Ce-eeeE
Q 003236 621 --------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAGV 678 (837)
Q Consensus 621 --------I~IWDl~~~~~~-~~~~~--~h~~~V~sl~fspdg~~llasgs~----Dg~I~vwDl~t------~~-~i~~ 678 (837)
|++|++.++... ...+. .|...+..+.|+|+++.++++... +..|++||+.+ +. ....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 999999876532 22222 345668899999999987766642 56899999986 42 2344
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe--EEEEEcCCCC--CEEEEEEcCCCCEEEEEe-CC--eE
Q 003236 679 FKCQSGATQMRFQPRLGRILAAAIE----NYISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--LV 747 (837)
Q Consensus 679 ~~~~~~i~sl~~sp~g~~llags~d----g~I~iwDl~s~~--~~~~l~~h~~--~V~sl~~spdg~~Lasgs-Dg--~I 747 (837)
+..........|+++++.|+..+.. ..|.+||+.++. ....+..|.. .+..++|++++.++++.. |+ .|
T Consensus 282 l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l 361 (710)
T 2xdw_A 282 LIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361 (710)
T ss_dssp EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred eeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence 4432222233588999988887764 369999998763 1233444443 688899997777777777 77 46
Q ss_pred EEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCc
Q 003236 748 RVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK 801 (837)
Q Consensus 748 ~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d----g~I~IwDl~s~~ 801 (837)
++||+.++ ..+..+..+...+..+.++|++..|++.... +.|++||+.+++
T Consensus 362 ~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 QLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 67777565 4556666667778889999999877655433 489999998877
No 183
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=2.9e-14 Score=155.67 Aligned_cols=251 Identities=10% Similarity=0.019 Sum_probs=188.3
Q ss_pred CCCcEEEEeCCCCeEEEEec------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEE
Q 003236 575 HDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648 (837)
Q Consensus 575 ~Dg~I~VWd~~t~~~~~~l~------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~f 648 (837)
.++.|.+||.++++....+. .......++.+. +++++++...++.|.+||..+.+. +..+. .......+++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF 91 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence 37899999999998876542 122446778874 345555666689999999998764 44454 3467889999
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC------CeeEEEEecCCCEEEEEE--cCCeEEEEECCCCeEEEEE
Q 003236 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS------GATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKL 720 (837)
Q Consensus 649 spdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~------~i~sl~~sp~g~~llags--~dg~I~iwDl~s~~~~~~l 720 (837)
++++ .++++...++.|.+||+.+++....+.... ....+++ +++.++++. .++.|.+||+.+++.+..+
T Consensus 92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i 168 (328)
T 3dsm_A 92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL 168 (328)
T ss_dssp EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence 8887 566666578999999999999888887655 5667777 456777776 3789999999999888877
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEe-C----------CeEEEEEcCCCCCceeEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 003236 721 QGHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 721 ~~h~~~V~sl~~spdg~~Lasgs-D----------g~I~IwDl~s~~~~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~ 788 (837)
... .....++++++|++++++. + +.|.+||..++ +....+... ......++|+|+++.|+++..
T Consensus 169 ~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 169 TIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp ECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 643 3457889999999777766 4 68999999877 444444432 346899999999999988765
Q ss_pred CCeEEEEECCCCcEEE--ec-cCCCCeeEEEEeCC-CCEEEEE----ECCCcEEEeC
Q 003236 789 YETLELWNMTENKTLT--LS-AHDKLVSSLAASTV-NGMVASA----SHDKCVKIWK 837 (837)
Q Consensus 789 dg~I~IwDl~s~~~~~--l~-~h~~~V~sla~spd-g~~LaSg----s~DG~I~IWd 837 (837)
.|.+||..+++... +. .+.....+++++|+ +.++++. ..++.|.+||
T Consensus 245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 89999999887642 11 22467899999994 5555555 5678999986
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.66 E-value=1.8e-14 Score=156.96 Aligned_cols=232 Identities=18% Similarity=0.198 Sum_probs=163.3
Q ss_pred CCeEEEEEcCCCCEEEEEECC---C--cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC------------
Q 003236 556 SKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------ 618 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~D---g--~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D------------ 618 (837)
..+.+++|||||++||+++.+ + .|++|++.+++.......+ . +.+++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 458899999999999987754 2 3888899888776555433 4 9999999999999888743
Q ss_pred ---------------CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC---------cEEEEECCCCe
Q 003236 619 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---------EIRYWSINNGS 674 (837)
Q Consensus 619 ---------------g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg---------~I~vwDl~t~~ 674 (837)
..|++||+.+++. +..+.. . .+..++|+|++ +++++..+. .|+++| +++
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~ 209 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK 209 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE
T ss_pred cceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc
Confidence 5799999987653 233443 3 78899999998 555664432 455555 565
Q ss_pred eeeEEecCCCeeEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEEEEcCCCCCEEE-EEEcCCCCEEEEEe-C
Q 003236 675 CAGVFKCQSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-D 744 (837)
Q Consensus 675 ~i~~~~~~~~i~sl~~sp~g~~llags~d--------g~I~iwDl~s~~~~~~l~~h~~~V~s-l~~spdg~~Lasgs-D 744 (837)
....... ..+.. ++|+|+.|++++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++ +
T Consensus 210 ~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 210 EEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp EEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred eEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 5444443 33433 49999998887754 3688888 55555545556778886 9999 88 777777 8
Q ss_pred CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE-EEEECCCCcEEEeccCCCC
Q 003236 745 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMTENKTLTLSAHDKL 811 (837)
Q Consensus 745 g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I-~IwDl~s~~~~~l~~h~~~ 811 (837)
+.++|| +.++ .. ..+..+...|.+++|+| ..+++++.++.. .||.+. ++...+..|...
T Consensus 283 ~~~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~ 342 (347)
T 2gop_A 283 GSVNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP 342 (347)
T ss_dssp TEEEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred CcEEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence 899999 8743 33 33334467899999999 677777777654 666665 666566666543
No 185
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=2.9e-13 Score=158.67 Aligned_cols=265 Identities=11% Similarity=0.062 Sum_probs=194.8
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC--CCCceeEEeeccccc
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT 642 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~--~~~~~~~~~~~h~~~ 642 (837)
+.+.++++...++.|.+||..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+. +.+. +..+.. ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v~~i~~-G~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKI-GSE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEEC-CSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-eEEEec-CCC
Confidence 34456677778899999999999999888643 457799999999999999999999999995 5443 444443 234
Q ss_pred eEEEEEc----CCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC------------CCeeEEEEecCCCEEEEEEc-CCe
Q 003236 643 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ------------SGATQMRFQPRLGRILAAAI-ENY 705 (837)
Q Consensus 643 V~sl~fs----pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~------------~~i~sl~~sp~g~~llags~-dg~ 705 (837)
...++|+ |+|++++++...++.|.++|..+.+.+..+... ..+..+..++++..+++... +|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 6799999 699999988888899999999999988877642 15677888888776665554 589
Q ss_pred EEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeec-----CCCceEEEEE
Q 003236 706 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF 776 (837)
Q Consensus 706 I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~-----~~~~I~sv~f 776 (837)
|.++|..+.+. +..+ .......++.|+|++++|+++. ++.|.++|+.++ +.+..+.. |.+.-.. .+
T Consensus 322 v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~ 396 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV 396 (567)
T ss_dssp EEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred EEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence 99999987532 2233 2445678899999999988776 789999999987 44444332 2221222 26
Q ss_pred eCCCCEEEEEE--cCCeEEEEECCC-------CcEE-EeccCCCCeeEEEEeCCCCEEEEEEC-------CCcEEEeC
Q 003236 777 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK 837 (837)
Q Consensus 777 spdg~~L~sgs--~dg~I~IwDl~s-------~~~~-~l~~h~~~V~sla~spdg~~LaSgs~-------DG~I~IWd 837 (837)
+|++..+++.+ .++.|.++|... .+.+ .+......-..+..+|++++|.+... ...|.|+|
T Consensus 397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 88866666554 457999999987 4555 34433333345778999999888663 34787775
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=6.9e-14 Score=149.42 Aligned_cols=239 Identities=9% Similarity=0.069 Sum_probs=172.2
Q ss_pred eEEEEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEE
Q 003236 588 TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666 (837)
Q Consensus 588 ~~~~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~ 666 (837)
..+..+..+.....+++|+|+++ +++++..++.|.+||..++ ...+..+...+.++++++++. ++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeEE
Confidence 33445555667789999999998 7788888999999999875 455666778899999999987 555665578999
Q ss_pred EEECCCCeeeeEEec-----CCCeeEEEEecCCCEEEEE----E-------------cCCeEEEEECCCCeEEEEEcCCC
Q 003236 667 YWSINNGSCAGVFKC-----QSGATQMRFQPRLGRILAA----A-------------IENYISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 667 vwDl~t~~~i~~~~~-----~~~i~sl~~sp~g~~llag----s-------------~dg~I~iwDl~s~~~~~~l~~h~ 724 (837)
+||..+++....... ...+..++++++|..+++. + ..+.|..+|.. ++. ..+..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCC
Confidence 999988876544322 2346679999998877763 2 13467777766 443 3344566
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcE
Q 003236 725 NQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT 802 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~ 802 (837)
..+..++|+|++++|++.+ ++.|++|++. ++........+..+...+..++++++|..++ ++ ++.|.+||......
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~-~~~v~~~~~~g~~~ 249 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA-GDGVHVLTPDGDEL 249 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE-TTEEEEECTTSCEE
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec-CCeEEEECCCCCEE
Confidence 7789999999999985555 7899999997 3321011222233445567899999998544 44 78999999874333
Q ss_pred EEeccCCCCeeEEEE-eCCCCEEEEEECCCcEEE
Q 003236 803 LTLSAHDKLVSSLAA-STVNGMVASASHDKCVKI 835 (837)
Q Consensus 803 ~~l~~h~~~V~sla~-spdg~~LaSgs~DG~I~I 835 (837)
..+..+.. +++++| .++++.|++++.++.+++
T Consensus 250 ~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 250 GRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI 282 (296)
T ss_dssp EEEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred EEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence 35666666 999999 588999998888875554
No 187
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=1.1e-12 Score=138.97 Aligned_cols=275 Identities=8% Similarity=-0.025 Sum_probs=193.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
+......+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34456679999999999988877778999999988 55443 233344679999999999877777668899999988 4
Q ss_pred CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEE
Q 003236 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYIS 707 (837)
Q Consensus 630 ~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~-~~~~i~sl~~sp~g~~llags~dg~I~ 707 (837)
+............+.++++.+++. ++++...++.|..||.. ++.... +. ....+..+++.++++.+++...++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 432222232446789999999876 55566557889999988 554432 11 235688999999988555544578999
Q ss_pred EEECCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 708 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 708 iwDl~s~~~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
+||. +++... ....+...+.++++++++.++++.. .+.|.+||. ++. ............+.++++++++..+++
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEe
Confidence 9998 444333 2233456789999999998777766 668999998 332 122223334567889999999984444
Q ss_pred EEcCCeEEEEECCCCcEEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 786 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 786 gs~dg~I~IwDl~s~~~~~l--~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
...++.|.+||. +++...+ ......+.+++++++|.++++.. . .|..+
T Consensus 247 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 247 EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 445689999998 4554433 33456789999999998766654 4 55544
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=1.1e-13 Score=151.17 Aligned_cols=253 Identities=8% Similarity=-0.020 Sum_probs=182.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
....+++. +++++++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||..+.+. ...+
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i 121 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYI 121 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEE
Confidence 35677774 44556666667999999999999988885 446789999998885444444899999999998654 3333
Q ss_pred eccc-----cceEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcC-------
Q 003236 637 TGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIE------- 703 (837)
Q Consensus 637 ~~h~-----~~V~sl~fspdg~~llasgs-~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~d------- 703 (837)
.... .....+++ ++..++++.. .++.|.+||+.+++.+..+........+.++++++.++++..+
T Consensus 122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence 3222 14567777 4566666654 4889999999999999888877778889999998766555544
Q ss_pred ---CeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCC
Q 003236 704 ---NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 779 (837)
Q Consensus 704 ---g~I~iwDl~s~~~~~~l~~h-~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspd 779 (837)
+.|.+||..+++....+... ...+..++|+|++++|+++.. .|.+||..++.... ...+.........++++|+
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCC
Confidence 78999999999887776532 346899999999998887655 89999998764211 1111212466889999996
Q ss_pred CCEEEEEE-----cCCeEEEEECCCCcEEEeccCCCCeeEEEE
Q 003236 780 FPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAA 817 (837)
Q Consensus 780 g~~L~sgs-----~dg~I~IwDl~s~~~~~l~~h~~~V~sla~ 817 (837)
+..|+++. .++.|.+||.. ++.+....-......++|
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 65666665 56799999998 776633333444556665
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=6.1e-15 Score=177.63 Aligned_cols=247 Identities=10% Similarity=-0.004 Sum_probs=171.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEE-----ECCCcEEEEeCCCCeEEEEeccCCCCe--EEEEEcCCCCEEEEEeCCCe-----
Q 003236 553 ASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 620 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasg-----s~Dg~I~VWd~~t~~~~~~l~~h~~~I--~~l~fspdg~~Latgs~Dg~----- 620 (837)
+|...+.+++|||||++||.+ +.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 455568999999999999844 345689999999987641 1122223 68999999999999998876
Q ss_pred --------EEEEEcCCCCc---eeEEeeccccceEEEEEcCCCCeEEEEEeCC-C--cEEEEECCCCeeeeEEecCCCee
Q 003236 621 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKCQSGAT 686 (837)
Q Consensus 621 --------I~IWDl~~~~~---~~~~~~~h~~~V~sl~fspdg~~llasgs~D-g--~I~vwDl~t~~~i~~~~~~~~i~ 686 (837)
|++|++.++.. .+.....|...+.++.|+|+|..++++...+ + .|++||..++...........+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 275 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY 275 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence 99999987653 2223334556789999999998887666543 2 67777776666555555555566
Q ss_pred EEEEecCCCEEEEEEc----CCeEEEEECCCCeE---EEEEcCC-CCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003236 687 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK 757 (837)
Q Consensus 687 sl~~sp~g~~llags~----dg~I~iwDl~s~~~---~~~l~~h-~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~ 757 (837)
...+ ++++ +++.+. ++.|.+||+.++.. ...+..+ ...|..++|+ ++.++++.. |+..+||.+....
T Consensus 276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 351 (695)
T 2bkl_A 276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG- 351 (695)
T ss_dssp EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC-
T ss_pred EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 6666 5666 655554 47899999987642 3333333 4568888998 666777766 8887777665211
Q ss_pred ceeEEEeecC-CCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCcEEEec
Q 003236 758 GECIHELSCT-GNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTLS 806 (837)
Q Consensus 758 ~~~i~~~~~~-~~~I~sv~fspdg~~L~sgs~----dg~I~IwDl~s~~~~~l~ 806 (837)
.....+..+ ...+..++++|++..|++... .+.|++||+.+++...+.
T Consensus 352 -~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 352 -KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA 404 (695)
T ss_dssp -CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred -CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence 344455444 556777889999987775543 358999999988765443
No 190
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.63 E-value=6.4e-15 Score=162.82 Aligned_cols=248 Identities=8% Similarity=0.029 Sum_probs=170.6
Q ss_pred EEEeCCCCeEEEEeccCCCC-----eEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCceeEEeeccccc-eEEEEEcC
Q 003236 580 VLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP 650 (837)
Q Consensus 580 ~VWd~~t~~~~~~l~~h~~~-----I~~l~fspdg~~Latgs~D---g~I~IWDl~~~~~~~~~~~~h~~~-V~sl~fsp 650 (837)
..+|..++..+..+..+... +.+++|+|||++|+.+..+ ..|.+||+.+++ ...+..+... +..+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ--AVQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE--EEECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc--EEEeecCCCCccccceECC
Confidence 34577888877777655443 7889999999998877553 478888988754 2333333333 33488999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCe-eE-------------------EEEecCCCEEEEE-----EcCCe
Q 003236 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA-TQ-------------------MRFQPRLGRILAA-----AIENY 705 (837)
Q Consensus 651 dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i-~s-------------------l~~sp~g~~llag-----s~dg~ 705 (837)
++..++ .++.++.|++||+.+++........... .. +.|+|+++.++++ ..+..
T Consensus 91 dg~~l~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 91 DERAFF-YVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp TSSEEE-EEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred CCCEEE-EEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 988655 5555778999999988876666543331 11 2456666655543 34568
Q ss_pred EEEEECCCCeEEEEEcCCCCCEEEEEEcC-CCCEEEEEe-C------CeEEEEEcCCCCCceeEEEeecC--CCceEEEE
Q 003236 706 ISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-D------ELVRVWSIGSGSKGECIHELSCT--GNKFHSCV 775 (837)
Q Consensus 706 I~iwDl~s~~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~~~~--~~~I~sv~ 775 (837)
|++||+.+++..... .+...+..+.|+| ++..|+.++ + ..|.+||+..+. ...+..+ ...+..++
T Consensus 170 l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----~~~l~~~~~~~~~~~~~ 244 (396)
T 3c5m_A 170 LIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----VRKIKEHAEGESCTHEF 244 (396)
T ss_dssp EEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----CEESSCCCTTEEEEEEE
T ss_pred EEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----eeEeeccCCCccccceE
Confidence 999999988765544 4667899999999 788776665 2 368888886542 1222222 23578899
Q ss_pred EeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCCCCeeEEEEeC-CCCEEEEEE----------------CCCcE
Q 003236 776 FHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASAS----------------HDKCV 833 (837)
Q Consensus 776 fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~~~V~sla~sp-dg~~LaSgs----------------~DG~I 833 (837)
|+|+|++|++++.+ +.|++||+.+++...+..... +. +.|+| ||++|++++ .++.|
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i 322 (396)
T 3c5m_A 245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFL 322 (396)
T ss_dssp ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEE
T ss_pred ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcE
Confidence 99999988877654 349999999887664433222 33 89999 999888765 24678
Q ss_pred EEeC
Q 003236 834 KIWK 837 (837)
Q Consensus 834 ~IWd 837 (837)
++||
T Consensus 323 ~~~d 326 (396)
T 3c5m_A 323 YVLN 326 (396)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8885
No 191
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.61 E-value=1.3e-13 Score=152.93 Aligned_cols=271 Identities=10% Similarity=0.069 Sum_probs=193.7
Q ss_pred EEEcCCCCEEEEEEC-----CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 003236 561 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 625 (837)
Q Consensus 561 l~fSpdg~~Lasgs~-----Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWD 625 (837)
....|+++.+++... ++.|.++|..+++.+.++.....+ . ++++||+++|++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445789998888765 679999999999999998765555 4 99999999998876 367899999
Q ss_pred cCCCCceeEEee-cc------ccceEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEE
Q 003236 626 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 626 l~~~~~~~~~~~-~h------~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
..+.+. +..+. +. ......+.|+|||++++++... ++.|.++|+.+++.+..+...+. ...+......+
T Consensus 116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEE
T ss_pred CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCcee
Confidence 998764 44332 21 1246679999999988877643 78999999999999999876442 22333345677
Q ss_pred EEEEcCCeEEEEECCC-CeEEEEEcCC----CCCEE-EEEEc-CCCCEEEEEeCCeEEEEEcCCCCCceeEEEee---c-
Q 003236 698 LAAAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS---C- 766 (837)
Q Consensus 698 lags~dg~I~iwDl~s-~~~~~~l~~h----~~~V~-sl~~s-pdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~---~- 766 (837)
++.+.||.+.++++.+ ++.......+ ...+. ...|. ++|++++++.++.|+++|+.+... ..+..+. .
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccc
Confidence 8889999999999986 5543322111 12222 24564 688777766689999999976532 2222221 0
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-
Q 003236 767 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 828 (837)
Q Consensus 767 ------~~~~I~sv~fspdg~~L~sgs~----------dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs- 828 (837)
....+..++++++++.+++... .+.|.++|+.+++.+....-...++.|++++|++ +|+++.
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 0122335778999999998764 2479999999999985544445789999999997 666654
Q ss_pred CCCcEEEeC
Q 003236 829 HDKCVKIWK 837 (837)
Q Consensus 829 ~DG~I~IWd 837 (837)
.++.|.|+|
T Consensus 352 ~~~~VsViD 360 (386)
T 3sjl_D 352 GDKTLYIHD 360 (386)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEEEE
Confidence 588999886
No 192
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=1.2e-13 Score=144.75 Aligned_cols=238 Identities=8% Similarity=-0.042 Sum_probs=168.5
Q ss_pred CeEEEEEcCCCCEEE-EEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 557 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 557 ~V~sl~fSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
...+++++++|++++ +.+.++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence 578999999999777 446788999999766544333233445788999999998666555 88999999876443 22
Q ss_pred ee-ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC
Q 003236 636 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIENYISILDVET 713 (837)
Q Consensus 636 ~~-~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s 713 (837)
+. .....+.++++++++. ++++...++.|.+|+..+........ ....+..+++++++..+++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 22 2335789999999876 66666668899999876554332221 124578899999988555555678999999987
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003236 714 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 714 ~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I 792 (837)
.........+...+.+|+++++|.++++.. ++.|.+||..... .......+...+..++++++|..+++...++.|
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~---~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC---CEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc---ceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence 765544333446789999999997777766 7899999986642 222222233568999999999877777778899
Q ss_pred EEEECCCCc
Q 003236 793 ELWNMTENK 801 (837)
Q Consensus 793 ~IwDl~s~~ 801 (837)
++|++...+
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.60 E-value=2.2e-12 Score=143.58 Aligned_cols=266 Identities=9% Similarity=0.001 Sum_probs=185.2
Q ss_pred EcCCCCEEEEEEC--CC---cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEcC
Q 003236 563 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE 627 (837)
Q Consensus 563 fSpdg~~Lasgs~--Dg---~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~ 627 (837)
..|+++++++... .. +|.+||..+++.+..+.....+ .++|+||+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3467777666643 22 8899999999999888755444 999999999999886 36789999998
Q ss_pred CCCceeEEeecc-------ccceEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeE-EecCCCeeEEEEecCC-CEE
Q 003236 628 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKCQSGATQMRFQPRL-GRI 697 (837)
Q Consensus 628 ~~~~~~~~~~~h-------~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~-~~~~~~i~sl~~sp~g-~~l 697 (837)
+.+. +..+.-. ......+.|+|+|++++++... ++.|.++| .+++.+.. +..... +.+.+++ ..+
T Consensus 106 t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF 180 (373)
T ss_pred CCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence 7654 3333211 1235589999999988876644 58899999 99998877 655433 4455655 345
Q ss_pred EEEEcCCeEEEEECCCCeEEEEEc-----CCCCCE-EEEEEcCCCCEEEEE-eCCeEEEEEcCCCCCceeEEEeec----
Q 003236 698 LAAAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYLASV-SDELVRVWSIGSGSKGECIHELSC---- 766 (837)
Q Consensus 698 lags~dg~I~iwDl~s~~~~~~l~-----~h~~~V-~sl~~spdg~~Lasg-sDg~I~IwDl~s~~~~~~i~~~~~---- 766 (837)
++.+.||.+.++|. +++.+.... ....++ ....+.+++..++.. .++.|.+.|+..... ..+..+..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~ 258 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGG 258 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCc
Confidence 66778999999999 776653322 111222 234566665544443 478999999975421 22222211
Q ss_pred ------CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-
Q 003236 767 ------TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS- 828 (837)
Q Consensus 767 ------~~~~I~sv~fspdg~~L~sgs~----------dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs- 828 (837)
.......++++++++.++++.. .+.|.++|+.+++.+..........+++|+|||+ +++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence 1122445789999998888764 3579999999999875444555789999999999 788877
Q ss_pred CCCcEEEeC
Q 003236 829 HDKCVKIWK 837 (837)
Q Consensus 829 ~DG~I~IWd 837 (837)
.++.|.|||
T Consensus 339 ~~~~V~ViD 347 (373)
T 2mad_H 339 GTEVLHIYD 347 (373)
T ss_pred CCCeEEEEE
Confidence 589999986
No 194
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=2.2e-13 Score=164.38 Aligned_cols=268 Identities=8% Similarity=-0.009 Sum_probs=183.0
Q ss_pred CCCCEEEEEECCC-----cEEEEeCCCCeEEEEe------ccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCC
Q 003236 565 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 628 (837)
Q Consensus 565 pdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~Dg-----~I~IWDl~~ 628 (837)
|||++++....++ .|++.+...++....+ .+|...+..++|+|||++|+.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8899877665332 3455555444433222 13445688999999999998876643 899999998
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCc----------------EEEEECCCCeee--eEEec---CCCeeE
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKC---QSGATQ 687 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~----------------I~vwDl~t~~~i--~~~~~---~~~i~s 687 (837)
++.....+. ...+.+++|+||++.++++.. ++. |++|++.++... ..+.. ...+..
T Consensus 161 g~~~~~~~~--~~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLE--RVKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEE--EECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred CCCCccccc--CcccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 764322222 223778999999987776654 433 999999887632 22222 234678
Q ss_pred EEEecCCCEEEEEEc-----CCeEEEEECCC------Ce-EEEEEcCCCCCEEEEEEcCCCCEEEEEe--CC---eEEEE
Q 003236 688 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE---LVRVW 750 (837)
Q Consensus 688 l~~sp~g~~llags~-----dg~I~iwDl~s------~~-~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg---~I~Iw 750 (837)
+.|+|++++|+.++. +..|++||+.+ +. ....+..+...+.. .|+++|..|+..+ ++ .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 999999999988876 56899999986 42 34555666666655 4888998777665 22 69999
Q ss_pred EcCCCCCceeEEEeecCC--CceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEE
Q 003236 751 SIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA 825 (837)
Q Consensus 751 Dl~s~~~~~~i~~~~~~~--~~I~sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~La 825 (837)
|+.++... ....+..+. ..+..++|++++..+++...++ .|++||+.+++.+ .+..+.+.|..++++|++..|+
T Consensus 317 d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~ 395 (710)
T 2xdw_A 317 DFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF 395 (710)
T ss_dssp ETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred eCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence 99876321 123333333 3678899997777777777787 5777888677654 5666777889999999987655
Q ss_pred EE-E---CCCcEEEeC
Q 003236 826 SA-S---HDKCVKIWK 837 (837)
Q Consensus 826 Sg-s---~DG~I~IWd 837 (837)
.. + ..+.|++||
T Consensus 396 ~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 396 YQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEECSSCCCEEEEEE
T ss_pred EEEeCCCCCCEEEEEE
Confidence 33 2 246787775
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=2e-13 Score=143.03 Aligned_cols=233 Identities=7% Similarity=-0.085 Sum_probs=165.2
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee
Q 003236 599 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (837)
Q Consensus 599 ~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 677 (837)
...++++++++++++ +.+.++.|.+||..+... ......+...+.++++++++. ++++.. ++.|.+||........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence 688999999998776 446789999999865442 111123335688999999877 555555 8899999987654332
Q ss_pred EE-ecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 678 VF-KCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 678 ~~-~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
.. .....+..+++.+++..+++...++.|.+||..+.............+.+++++++++++++.. ++.|.+||....
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 21 1125688999999988666656678999998766544332223345678999999999777766 789999998765
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEec-cCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 756 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~-~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
. ...........+..++++++|..+++...++.|.+||.......... .+...+.+++++++|.++++...++.|+
T Consensus 182 ~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~ 258 (270)
T 1rwi_B 182 N---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV 258 (270)
T ss_dssp C---EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred c---eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence 2 22222223367889999999965555555779999999776554433 3346789999999999888888999999
Q ss_pred EeC
Q 003236 835 IWK 837 (837)
Q Consensus 835 IWd 837 (837)
+|+
T Consensus 259 ~~~ 261 (270)
T 1rwi_B 259 KLT 261 (270)
T ss_dssp EEC
T ss_pred EEc
Confidence 985
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.57 E-value=2.1e-12 Score=138.21 Aligned_cols=240 Identities=10% Similarity=0.083 Sum_probs=170.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEE-------EECCCcEEEEeCCCCeEEEEec----cCCCCeEEEEEcCC-CCEEEEEeCCC
Q 003236 552 PASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADR 619 (837)
Q Consensus 552 ~~H~~~V~sl~fSpdg~~Las-------gs~Dg~I~VWd~~t~~~~~~l~----~h~~~I~~l~fspd-g~~Latgs~Dg 619 (837)
...-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++ +.++
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCC
Confidence 344455789999999988887 5778999999988877653322 25567999999999 654444 4455
Q ss_pred eEEEEEcCCCCceeEE-ee----ccccceEEEEEcCCCCeEEEEEeCC---------------CcEEEEECCCCeeeeEE
Q 003236 620 TVRVWDTENPDYSLRT-FT----GHSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGVF 679 (837)
Q Consensus 620 ~I~IWDl~~~~~~~~~-~~----~h~~~V~sl~fspdg~~llasgs~D---------------g~I~vwDl~t~~~i~~~ 679 (837)
.|.+||.. ++. ... .. .....+.++++++++. ++++...+ +.|..||.. ++.....
T Consensus 93 ~l~~~d~~-g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 93 GLLVVQTD-GTF-EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp EEEEEETT-SCE-EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CEEEEeCC-CCE-EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 79999988 543 222 11 1124588999999986 44454433 568888876 6555444
Q ss_pred ecCCCeeEEEEe----cCCCEEEEEE-cCCeEEEEECC-CCe-----EEEEEcCCC-CCEEEEEEcCCCCEEEEEe-CCe
Q 003236 680 KCQSGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DEL 746 (837)
Q Consensus 680 ~~~~~i~sl~~s----p~g~~llags-~dg~I~iwDl~-s~~-----~~~~l~~h~-~~V~sl~~spdg~~Lasgs-Dg~ 746 (837)
........++++ ++++.++++. .++.|.+||+. ++. ....+..+. ..+..++++++|.++++.. ++.
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 444567889999 9987777665 46899999976 443 223333343 5688999999999888876 889
Q ss_pred EEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCC
Q 003236 747 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE 799 (837)
Q Consensus 747 I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s 799 (837)
|.+||..++ ..+..+..+...+.+++|++++..|++++. ++.|..|++..
T Consensus 249 i~~~d~~~g---~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCC---cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999998765 333444555578999999999996766654 56899999864
No 197
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=1.1e-12 Score=139.67 Aligned_cols=241 Identities=10% Similarity=0.052 Sum_probs=178.6
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecc-ccce
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV 643 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h-~~~V 643 (837)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++|+ +.++.|.+||. +++. +..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCccc
Confidence 46789999999999999999999999998766 5789999999999888 45788999999 5554 5556554 3578
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC-------CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE
Q 003236 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS-------GATQMRFQPRLGRILAAAIENYISILDVETQVC 716 (837)
Q Consensus 644 ~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~-------~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~ 716 (837)
.++.+.++|..+++.++.++.|..+|. +++.+..+.... ....+.+.++++++++...++.|.+||.+ ++.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 899999998865544433677888886 688777776422 24456788999999988889999999998 999
Q ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------CceEEEEEeCCCCEEEEEEcC
Q 003236 717 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 717 ~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------~~I~sv~fspdg~~L~sgs~d 789 (837)
+.++... ..+.++.+.+++.+++++. ++.|..+|..++ +.+..+.... ..+..+...++|..+++....
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 9888754 4566788899999998888 668999999887 5666654322 237888889999866665311
Q ss_pred --------CeEEEEEC-CCCcEE-EeccC--CCCeeEEE
Q 003236 790 --------ETLELWNM-TENKTL-TLSAH--DKLVSSLA 816 (837)
Q Consensus 790 --------g~I~IwDl-~s~~~~-~l~~h--~~~V~sla 816 (837)
+..+++++ .+++++ .+..+ -+.|.++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred ccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 23355555 456655 33322 34455544
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.55 E-value=2.3e-13 Score=163.87 Aligned_cols=268 Identities=11% Similarity=-0.011 Sum_probs=173.3
Q ss_pred cCCCCEEEEEECCC-----cEEEEeCCCCeEEEEec------cCCCCeEEEEEcCCCCEEEE-----EeCCCeEEEEEcC
Q 003236 564 SPDGKLLATGGHDK-----KAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLAT-----SSADRTVRVWDTE 627 (837)
Q Consensus 564 Spdg~~Lasgs~Dg-----~I~VWd~~t~~~~~~l~------~h~~~I~~l~fspdg~~Lat-----gs~Dg~I~IWDl~ 627 (837)
+|+|++++....++ .|++.+...+.....+. +|...+.+++|+|||++||. |+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47899888776544 24444554544333332 45557999999999999984 4445789999999
Q ss_pred CCCce-eEEeeccccceEEEEEcCCCCeEEEEEeCCCc-------------EEEEECCCCee--eeEEec---CCCeeEE
Q 003236 628 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSC--AGVFKC---QSGATQM 688 (837)
Q Consensus 628 ~~~~~-~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~-------------I~vwDl~t~~~--i~~~~~---~~~i~sl 688 (837)
+++.. ...+.. .....++|+|||..++++. .|.. |++|++.++.. ...+.. ...+..+
T Consensus 156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~-~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~ 232 (695)
T 2bkl_A 156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYEW-LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS 232 (695)
T ss_dssp TCCBCSSCCBSC--CTTCCCEECTTSSEEEEEE-CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred CCCCcCCcccCc--ccccceEEecCCCEEEEEE-ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence 87642 111111 1126899999998766554 4444 99999998763 223322 2467899
Q ss_pred EEecCCCEEEEEEcCC----eEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcee
Q 003236 689 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC 760 (837)
Q Consensus 689 ~~sp~g~~llags~dg----~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs----Dg~I~IwDl~s~~~~~~ 760 (837)
.|+|+|++|++++.++ .|.++|..++... .+..+...+....| ++|.+++.+. ++.|.+||+.++.....
T Consensus 233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~ 310 (695)
T 2bkl_A 233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW 310 (695)
T ss_dssp EECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred EECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence 9999999998887766 7778877655433 33345556666666 5555444443 36899999977632112
Q ss_pred EEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEeccC-CCCeeEEEEeCCCCEEEEEE----CCCc
Q 003236 761 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC 832 (837)
Q Consensus 761 i~~~~~~-~~~I~sv~fspdg~~L~sgs~dg~I~Iw--Dl~s~~~~~l~~h-~~~V~sla~spdg~~LaSgs----~DG~ 832 (837)
...+..+ ...+..++|+ ++..+++...++..+|| ++..+....+..+ ...|..+++++++..|+... .+++
T Consensus 311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 389 (695)
T 2bkl_A 311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ 389 (695)
T ss_dssp EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence 2223333 4567888888 66677777888866666 4443333344444 66788889999997666332 3467
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|++||
T Consensus 390 v~~~d 394 (695)
T 2bkl_A 390 IYKTS 394 (695)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88875
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.55 E-value=2.6e-11 Score=128.16 Aligned_cols=240 Identities=10% Similarity=0.033 Sum_probs=167.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS 632 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~ 632 (837)
.+...+.+++++++|.++++...++.|..||.........+......+.++++.+++.++++...++.|.+||. ++...
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 34567999999999998887776889999997632222223334567999999999988887777889999998 44432
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-Ee-cCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK-CQSGATQMRFQPRLGRILAAAIENYISILD 710 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~-~~~~i~sl~~sp~g~~llags~dg~I~iwD 710 (837)
......+...+.++++++++. ++++...++.|.+||. +++.... .. ....+..+++.+++..+++...++.|.+||
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence 222333456789999999875 5556666789999999 6665442 11 234578899999987655555578999999
Q ss_pred CCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 711 VETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 711 l~s~~~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
. ++.... .+..+...+.+++++++|.++++.. ++.|.+||. ++. .....+..+...+.++++ +++. |++++.
T Consensus 211 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~--~~~~~~~~~~~~~~~i~~-~~g~-l~v~~~ 284 (299)
T 2z2n_A 211 T-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI--IEEYPIQIKSAEPHGICF-DGET-IWFAME 284 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE--EEEEECSSSSCCEEEEEE-CSSC-EEEEET
T ss_pred C-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc--eEEEeCCCCCCccceEEe-cCCC-EEEEec
Confidence 9 655332 2333557899999999999777765 789999998 331 111223344567899999 7776 455555
Q ss_pred CCeEEEEECCCCc
Q 003236 789 YETLELWNMTENK 801 (837)
Q Consensus 789 dg~I~IwDl~s~~ 801 (837)
.+.|..++..+++
T Consensus 285 ~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 285 CDKIGKLTLIKDN 297 (299)
T ss_dssp TTEEEEEEEC---
T ss_pred CCcEEEEEcCccc
Confidence 6778888876654
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=4.4e-13 Score=162.70 Aligned_cols=245 Identities=12% Similarity=0.039 Sum_probs=167.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe--------
Q 003236 554 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 620 (837)
Q Consensus 554 H~~~V~sl~fSpdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~-------- 620 (837)
|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33458899999999999887654 36999999998876532 12222468899999 99998887654
Q ss_pred ------EEEEEcCCCCce-eEEee--ccccceEEEEEcCCCCeEEEEEeC----CCcEEEEECCCC--eeeeEEe-cCCC
Q 003236 621 ------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFK-CQSG 684 (837)
Q Consensus 621 ------I~IWDl~~~~~~-~~~~~--~h~~~V~sl~fspdg~~llasgs~----Dg~I~vwDl~t~--~~i~~~~-~~~~ 684 (837)
|++|++.++... ...+. .+...+.++.|+|||..+++++.. ...|++||+.++ ++...+. ....
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 899999876531 22222 233458899999999887766653 348999999877 4133333 3333
Q ss_pred eeEEEEecCCCEEEEEEcC----CeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCC
Q 003236 685 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS 756 (837)
Q Consensus 685 i~sl~~sp~g~~llags~d----g~I~iwDl~s~--~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~-s~~ 756 (837)
+... ++++++.|+..+.+ +.|.+||+.++ .....+..+...+.+++|+ ++.++++.. |+..+||.+. ++
T Consensus 319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g- 395 (741)
T 1yr2_A 319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG- 395 (741)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence 4444 45889998888764 45999999874 4444455555567778887 555666666 8876666554 23
Q ss_pred CceeEEEeec-CCCceEEEEEeCCCCEEEEEEc----CCeEEEEECCCCcEEEe
Q 003236 757 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTL 805 (837)
Q Consensus 757 ~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~----dg~I~IwDl~s~~~~~l 805 (837)
.....+.. ....+..+.++|++..|+.... .+.|++||+.+++...+
T Consensus 396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l 447 (741)
T 1yr2_A 396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW 447 (741)
T ss_dssp --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence 34444543 3567888999999876664433 25899999998875444
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=4e-11 Score=133.40 Aligned_cols=244 Identities=11% Similarity=0.058 Sum_probs=172.9
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEEcCCCCE
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSR 611 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~~ 611 (837)
..+.....+ .++|+|||++|+++. .++.|.+||..+++.+..+... ......++|+|||++
T Consensus 61 ~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~ 138 (373)
T 2mad_H 61 GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD 138 (373)
T ss_pred EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE
Confidence 344443344 899999999998886 3678999999998888776432 123568999999999
Q ss_pred EEEEeC--CCeEEEEEcCCCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-----c-C
Q 003236 612 LATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----C-Q 682 (837)
Q Consensus 612 Latgs~--Dg~I~IWDl~~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-----~-~ 682 (837)
|++++. ++.|.++| .+++. +.. +.. . .|+.+.|++...+++.+.||.+.++|. +++.+.... . .
T Consensus 139 l~v~n~~~~~~v~viD-~t~~~-~~~~i~~-~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~ 211 (373)
T 2mad_H 139 LLFFQFAAGPAVGLVV-QGGSS-DDQLLSS-P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA 211 (373)
T ss_pred EEEEecCCCCeEEEEE-CCCCE-EeEEcCC-C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence 999874 57899999 87654 444 321 1 235566777767777888999999999 887664332 1 1
Q ss_pred CC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEcC----------CCCCEEEEEEcCCCCEEEEEe------
Q 003236 683 SG-ATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWNTSGEYLASVS------ 743 (837)
Q Consensus 683 ~~-i~sl~~sp~g~~llags~dg~I~iwDl~s~~--~~~~l~~----------h~~~V~sl~~spdg~~Lasgs------ 743 (837)
.. .....+.++++.++..+.++.|.++|+.... .+..+.. .......+.+++++..++++.
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~ 291 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence 11 1234567777776666678899999997652 2222221 122344578899998877754
Q ss_pred -----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEe
Q 003236 744 -----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 805 (837)
Q Consensus 744 -----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs-~dg~I~IwDl~s~~~~~l 805 (837)
++.|.++|+.+. +.+..+.. ......++|+||++ .++++. .++.|.+||+.+++.+..
T Consensus 292 ~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 292 KLHAAAKEVTSVTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cccCCCCeEEEEECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 247999999887 56666643 44689999999999 677776 478999999999998844
No 202
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.52 E-value=5.7e-12 Score=134.81 Aligned_cols=238 Identities=8% Similarity=-0.018 Sum_probs=163.8
Q ss_pred CCCCeEEEEEcCCCCEEEE-------EeCCCeEEEEEcCCCCceeEEe---eccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 596 HTQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 596 h~~~I~~l~fspdg~~Lat-------gs~Dg~I~IWDl~~~~~~~~~~---~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
.-....+++|++++.++++ +..++.|.+||..+++...... .++...+.++++++++..++++.. +..|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3346789999999988877 5778999999987766422111 124567899999998334554443 4479
Q ss_pred EEEECCCCeeeeE-Eec-----CCCeeEEEEecCCCEEEEEEcC---------------CeEEEEECCCCeEEEEEcCCC
Q 003236 666 RYWSINNGSCAGV-FKC-----QSGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQGHK 724 (837)
Q Consensus 666 ~vwDl~t~~~i~~-~~~-----~~~i~sl~~sp~g~~llags~d---------------g~I~iwDl~s~~~~~~l~~h~ 724 (837)
.+||.. ++.... ... ...+.++++++++..+++...+ +.|..||.. ++..... .+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCC
Confidence 999998 765443 221 1347899999998776666554 578888876 5443322 234
Q ss_pred CCEEEEEEc----CCCCEEEEEe--CCeEEEEEcC-CCCC--ceeEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 725 NQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 725 ~~V~sl~~s----pdg~~Lasgs--Dg~I~IwDl~-s~~~--~~~i~~~~~~~-~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
.....++|+ ++++.|+++. ++.|.+||+. ++.. ...+..+..+. ..+..++++++|..+++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 457889999 9997665554 7899999986 3311 01222333333 56788999999987777777889999
Q ss_pred EECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 003236 795 WNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 837 (837)
Q Consensus 795 wDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSg-s~DG~I~IWd 837 (837)
||..+++.+ .+..+...+.+++|+++++.|+.+ ..++.|..|+
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 999866654 445566789999999999955544 4567787764
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.51 E-value=2.2e-12 Score=145.47 Aligned_cols=266 Identities=8% Similarity=0.045 Sum_probs=188.5
Q ss_pred CCCCEEEEEECC-----CcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEcCCC
Q 003236 565 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP 629 (837)
Q Consensus 565 pdg~~Lasgs~D-----g~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~~~ 629 (837)
++++.+++.... +.|.++|..+++.+.++..-..+ .++++||+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466666655442 69999999999999998765555 899999999998886 3678999999987
Q ss_pred CceeEEee-c------cccceEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeeEEecCCCeeEEEEecCC-CEEEEE
Q 003236 630 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL-GRILAA 700 (837)
Q Consensus 630 ~~~~~~~~-~------h~~~V~sl~fspdg~~llasgs~-Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g-~~llag 700 (837)
+. +..+. + .......+.|+||+++++++... ++.|.++|+.+++.+..+..... ....|++ ..+++.
T Consensus 160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMN 235 (426)
T ss_dssp CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEE
T ss_pred cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEE
Confidence 65 44332 2 12345678999999988766543 68999999999999988886432 3344433 566777
Q ss_pred EcCCeEEEEECCCCeEEEEE----cCCCCCE-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--------
Q 003236 701 AIENYISILDVETQVCRLKL----QGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-------- 766 (837)
Q Consensus 701 s~dg~I~iwDl~s~~~~~~l----~~h~~~V-~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-------- 766 (837)
+.||.+.+.++.+++..... .....++ ..+.|.+++..++..+ .+.|.+.|+..... ..+..+..
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~ 314 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERAD 314 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGG
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccc
Confidence 88899888888666544321 1111121 2356788888777767 88999999875421 11111110
Q ss_pred --CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCc
Q 003236 767 --TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKC 832 (837)
Q Consensus 767 --~~~~I~sv~fspdg~~L~sgs~----------dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs-~DG~ 832 (837)
.......+++++++..+++... .+.|.++|..+.+.+....-.....+++|+||++ +++++. .++.
T Consensus 315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~ 394 (426)
T 3c75_H 315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT 394 (426)
T ss_dssp TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe
Confidence 0111223689999998888753 3479999999999884443344689999999999 888888 5899
Q ss_pred EEEeC
Q 003236 833 VKIWK 837 (837)
Q Consensus 833 I~IWd 837 (837)
|.|+|
T Consensus 395 VsVID 399 (426)
T 3c75_H 395 LHIYD 399 (426)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99986
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=3.5e-12 Score=154.72 Aligned_cols=268 Identities=12% Similarity=0.021 Sum_probs=171.7
Q ss_pred cCCCCEEEEEECCCc---EEEE--eCC---CCeEEEEe------ccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEE
Q 003236 564 SPDGKLLATGGHDKK---AVLW--CTE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVW 624 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~---I~VW--d~~---t~~~~~~l------~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IW 624 (837)
+|||++++....++. ..|| +.. .+.....+ .+|...+..++|+|||++|+.++.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389998887765433 4455 443 33332221 2233468899999999999887654 469999
Q ss_pred EcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC-------------cEEEEECCCCee--eeEEecC---CCee
Q 003236 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFKCQ---SGAT 686 (837)
Q Consensus 625 Dl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg-------------~I~vwDl~t~~~--i~~~~~~---~~i~ 686 (837)
|+.+++. +.. ..+...+..++|+|| +.++++...+. .|++|++.++.. ...+... ..+.
T Consensus 195 dl~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 9998774 222 222223468899999 87776654322 399999987653 2233322 2478
Q ss_pred EEEEecCCCEEEEEEcCC-----eEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C----CeEEEEEcCC
Q 003236 687 QMRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGS 754 (837)
Q Consensus 687 sl~~sp~g~~llags~dg-----~I~iwDl~s~--~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D----g~I~IwDl~s 754 (837)
.+.|+|+|++|+..+.++ .|++||+.++ .+...+..+...+.... +|+|..|+..+ + +.|.+||+.+
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 999999999998887654 8999999877 31445555555555554 48888887776 2 3599999877
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEecc-CCCCeeEEEEeCCCCEEE-EEE--
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS-- 828 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw--Dl~s~~~~~l~~-h~~~V~sla~spdg~~La-Sgs-- 828 (837)
+. ......+..+...+..+.++ ++..+++...++..+|| ++..+....+.. +...|..++++++++.|+ +.+
T Consensus 351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~ 428 (741)
T 1yr2_A 351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF 428 (741)
T ss_dssp SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence 42 12333334444556677887 55566777778765555 554443334443 467789999999987555 322
Q ss_pred -CCCcEEEeC
Q 003236 829 -HDKCVKIWK 837 (837)
Q Consensus 829 -~DG~I~IWd 837 (837)
..++|++||
T Consensus 429 ~~P~~i~~~d 438 (741)
T 1yr2_A 429 TQPATVLALD 438 (741)
T ss_dssp TEEEEEEEEE
T ss_pred CCCCEEEEEE
Confidence 346788775
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=5.7e-12 Score=139.78 Aligned_cols=262 Identities=12% Similarity=0.128 Sum_probs=177.9
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccCC-------CCeEEEEEcCCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLS 610 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h~-------~~I~~l~fspdg~ 610 (837)
+..+.....+ .++++|||++|+++. .++.|.+||..+++.+.++.... .....++|+|||+
T Consensus 72 ~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk 149 (386)
T 3sjl_D 72 IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK 149 (386)
T ss_dssp EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred EEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC
Confidence 3444433444 399999999887765 36789999999999988875321 2466799999999
Q ss_pred EEEEEeC--CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeeEEec-----C
Q 003236 611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFKC-----Q 682 (837)
Q Consensus 611 ~Latgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-~~~i~~~~~-----~ 682 (837)
+|+++.. ++.|.++|+.+.+. +..+.... |..+.|.+...+++.+.||.+.+.++.+ ++....... .
T Consensus 150 ~lyVan~~~~~~VsVID~~t~~v-v~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~ 224 (386)
T 3sjl_D 150 TLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED 224 (386)
T ss_dssp EEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred EEEEEEcCCCCeEEEEECCCCcE-EEEEECCC----cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc
Confidence 9998874 68999999998764 44443211 1223355555555777799999999976 554321111 0
Q ss_pred CCe-eEEEEecCCCEEEEEEcCCeEEEEECCCCe--EEEEEc---------C-CCCCEEEEEEcCCCCEEEEEe-C----
Q 003236 683 SGA-TQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWNTSGEYLASVS-D---- 744 (837)
Q Consensus 683 ~~i-~sl~~sp~g~~llags~dg~I~iwDl~s~~--~~~~l~---------~-h~~~V~sl~~spdg~~Lasgs-D---- 744 (837)
..+ ....|.+.++.++..+.+|.|+++|+.+.. .+..+. + ....+..+++++++..+++.. +
T Consensus 225 ~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 225 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred ccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 111 124565434455557778999999997653 332221 0 122334577899998888764 1
Q ss_pred ------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCeEEEEECCCCcEEEeccCCCCeeEEE
Q 003236 745 ------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTENKTLTLSAHDKLVSSLA 816 (837)
Q Consensus 745 ------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs~-dg~I~IwDl~s~~~~~l~~h~~~V~sla 816 (837)
+.|.++|+.+. +.+..+.. +..+..|++++|++ .|+++.. ++.|.++|..+++.+......+..+.|.
T Consensus 305 ~hk~~~~~V~viD~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~ 380 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI 380 (386)
T ss_dssp CTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred ccCCCCCEEEEEECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeE
Confidence 47999999988 55555543 34688999999996 6777654 7899999999999986655556666677
Q ss_pred EeCC
Q 003236 817 ASTV 820 (837)
Q Consensus 817 ~spd 820 (837)
+++|
T Consensus 381 ~s~d 384 (386)
T 3sjl_D 381 TTAD 384 (386)
T ss_dssp EECC
T ss_pred ECCc
Confidence 7776
No 206
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.47 E-value=2.5e-11 Score=129.33 Aligned_cols=214 Identities=12% Similarity=0.042 Sum_probs=165.6
Q ss_pred CCeEEcccCCCceEEeecCCCCCCCCccccccccCCCeeeeEEEEecCCC-CCeEEEEEcCCCCEEEEEECCCcEEEEeC
Q 003236 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (837)
Q Consensus 506 ~~~v~~Gs~D~~v~~w~s~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~H~-~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~ 584 (837)
++++++++.|+.|.+|...++ . .+..+..+. ..+.++.++|+|++|+ +.++.|..||.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG----------------~---~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~ 63 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK----------------E---IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR 63 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT----------------E---EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT
T ss_pred CcEEEeeCCCCEEEEEECCCC----------------e---EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC
Confidence 578889999999999954332 1 223334444 4688999999999888 45788999998
Q ss_pred CCCeEEEEeccCC-CCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEee------ccccceEEEEEcCCCCeEE
Q 003236 585 ESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLL 656 (837)
Q Consensus 585 ~t~~~~~~l~~h~-~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~------~h~~~V~sl~fspdg~~ll 656 (837)
+++.+..+..+. ..+.++.+.++|++|++.+. ++.|..+|.+ ++. +..+. .+......+++.++++ ++
T Consensus 64 -~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~-~l 139 (276)
T 3no2_A 64 -DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKGN-YL 139 (276)
T ss_dssp -TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTSC-EE
T ss_pred -CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCCC-EE
Confidence 889998887653 57889999999999999887 7888888763 443 33332 1223455667888877 55
Q ss_pred EEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC------CCEEEE
Q 003236 657 CSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHSV 730 (837)
Q Consensus 657 asgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~------~~V~sl 730 (837)
++...++.|.+||.. ++.+..+.....+.++.+.++++.++++..++.|..+|..+++.+.++..+. ..+..+
T Consensus 140 v~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~ 218 (276)
T 3no2_A 140 VPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQL 218 (276)
T ss_dssp EEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEE
T ss_pred EEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccc
Confidence 678889999999998 9999999887778888889999989888888899999999999999886432 237888
Q ss_pred EEcCCCCEEEEEeCC
Q 003236 731 CWNTSGEYLASVSDE 745 (837)
Q Consensus 731 ~~spdg~~LasgsDg 745 (837)
...++|.++++..+|
T Consensus 219 ~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 219 FPLQNGGLYICNWQG 233 (276)
T ss_dssp EECTTSCEEEEEECT
T ss_pred eEcCCCCEEEEeccC
Confidence 899999988887533
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.46 E-value=2.2e-10 Score=121.04 Aligned_cols=235 Identities=9% Similarity=-0.009 Sum_probs=165.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE-EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~-~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
.+...+.+++++++|.++++...++.|.+||.. ++.. ..+......+.++++.+++.++++...++.|..||.. +..
T Consensus 59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence 445678999999999888777667899999987 5543 2333344679999999999888877778899999987 443
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec---CCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC---QSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~---~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
....+......+.++++.+++. ++++...++.|.+||. +++... +.. ...+..+++.+++..+++....+.|.+
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred EEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 2222333456789999999877 6656666788999998 555443 322 345788999998765555555678999
Q ss_pred EECCCCeEEE-EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 709 LDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 709 wDl~s~~~~~-~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
||. ++.... .+..+...+.+++++++|.++++.. ++.|.+||.. +. .....+......+.+++++++|. |+++
T Consensus 214 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~i~~~~~g~-l~v~ 288 (300)
T 2qc5_A 214 ITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT--IQEYQLQTENAEPHGITFGKDGS-VWFA 288 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC--EEEEECCSTTCCCCCEEECTTSC-EEEE
T ss_pred EcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc--EEEEECCccCCccceeEeCCCCC-EEEE
Confidence 998 444332 3334556789999999999777665 6899999983 31 12222333346688899999987 4444
Q ss_pred EcCCeEEEEECC
Q 003236 787 GCYETLELWNMT 798 (837)
Q Consensus 787 s~dg~I~IwDl~ 798 (837)
+.. .|..+|..
T Consensus 289 ~~~-~i~~~~p~ 299 (300)
T 2qc5_A 289 LKC-KIGKLNLN 299 (300)
T ss_dssp CSS-EEEEEEEC
T ss_pred ccC-ceEEeCCC
Confidence 444 77777753
No 208
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.44 E-value=4.8e-12 Score=152.38 Aligned_cols=245 Identities=13% Similarity=0.041 Sum_probs=168.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE-----CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCe-------
Q 003236 553 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT------- 620 (837)
Q Consensus 553 ~H~~~V~sl~fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~------- 620 (837)
+|...|..++|||||++||.+. ....|+|||+.+++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3455688899999999988643 2357999999998865431 111113578899 9999999988743
Q ss_pred ------EEEEEcCCCCc---eeEEeec-cccceEEEEEcCCCCeEEEEEeCC---CcEEEEECCCCe-eeeEEec-CCCe
Q 003236 621 ------VRVWDTENPDY---SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKC-QSGA 685 (837)
Q Consensus 621 ------I~IWDl~~~~~---~~~~~~~-h~~~V~sl~fspdg~~llasgs~D---g~I~vwDl~t~~-~i~~~~~-~~~i 685 (837)
|++|++.++.. .+..... |...+.++.|+||+..++++.+.+ ..|+++|+.++. ....+.. ....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999987643 2222233 445678899999999888776533 589999998763 2333333 3333
Q ss_pred eEEEEecCCCEEEEEEcC----CeEEEEECCCCeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe--CC--eEEEEEcCCC
Q 003236 686 TQMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSG 755 (837)
Q Consensus 686 ~sl~~sp~g~~llags~d----g~I~iwDl~s~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg--~I~IwDl~s~ 755 (837)
... ++++++.|+..+.. +.|.++|+.++.. ...+..|...+. .|++++++|+... ++ .|++||+..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 333 67777877766653 5799999987643 234555666655 8899999888776 55 6889988743
Q ss_pred CCceeEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEECCCCcEEEec
Q 003236 756 SKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS 806 (837)
Q Consensus 756 ~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~d----g~I~IwDl~s~~~~~l~ 806 (837)
....+.. ....+..+.+++++..|+....+ +.|+.||+.+++...+.
T Consensus 361 ----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 ----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp ----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred ----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 2333332 33457777888888877776655 68999999888755443
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1.5e-10 Score=123.93 Aligned_cols=230 Identities=10% Similarity=0.035 Sum_probs=157.4
Q ss_pred EeccCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 003236 592 TLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670 (837)
Q Consensus 592 ~l~~h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl 670 (837)
.+..+.....+..|++++ .++++...++.|+.||..++.. ..+ .....+.++++++++. ++++ . +..|.+||.
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNW 80 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEET
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEEC
Confidence 344455567789999964 4556666789999999987653 222 2456799999999988 4433 3 568999999
Q ss_pred CCCeeeeEEecC-----CCeeEEEEecCCCEEEEEEcC-----------CeEEEEECCCCeEEEEEcCCCCCEEEEEEcC
Q 003236 671 NNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIE-----------NYISILDVETQVCRLKLQGHKNQVHSVCWNT 734 (837)
Q Consensus 671 ~t~~~i~~~~~~-----~~i~sl~~sp~g~~llags~d-----------g~I~iwDl~s~~~~~~l~~h~~~V~sl~~sp 734 (837)
.+++........ ..+..++++++++.+++.... +.|+.+|.. ++... +..+....+.++|+|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSL 158 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECT
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcC
Confidence 988765444321 236789999998865544322 345555543 33322 222344578999999
Q ss_pred CCCEEEEEe--CCeEEEEEcC--CCCCc--eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eecc
Q 003236 735 SGEYLASVS--DELVRVWSIG--SGSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA 807 (837)
Q Consensus 735 dg~~Lasgs--Dg~I~IwDl~--s~~~~--~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~ 807 (837)
+++.|+.+. ++.|.+||+. ++... ..+..+.........++++++|...++....+.|.+||..+++.+ .+..
T Consensus 159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence 999776655 7899999984 44211 122333333456789999999986666666778999999988877 5555
Q ss_pred CCCCeeEEEEe-CCCCEEEEEEC
Q 003236 808 HDKLVSSLAAS-TVNGMVASASH 829 (837)
Q Consensus 808 h~~~V~sla~s-pdg~~LaSgs~ 829 (837)
+...+++++|. |+++.|+.++.
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCceEEEEeCCCCCEEEEEcC
Confidence 66789999998 88876655543
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=4.5e-11 Score=134.69 Aligned_cols=230 Identities=10% Similarity=0.029 Sum_probs=161.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCee
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC 675 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~ 675 (837)
.....|+|+++++++++...++.|++||..++.. ...... ..... ++|++++..++ +++.++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-TTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-EEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-EEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence 4688999999999777777789999999987543 222222 33344 99999988655 444444 899999876655
Q ss_pred eeEE----e-cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE----EcCCCCCE--EEEEEcCCCCEEEEE-e
Q 003236 676 AGVF----K-CQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV--HSVCWNTSGEYLASV-S 743 (837)
Q Consensus 676 i~~~----~-~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~----l~~h~~~V--~sl~~spdg~~Lasg-s 743 (837)
...+ . ....+.+++++|+++.|+++..++.|+.||..++..... ..++...- ..++|+|++..|+++ .
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 2 335678899999777788877788999999987754332 22222222 399999965444444 4
Q ss_pred -CCeEEEEEcCCCCCceeEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEECCCCcEEEec
Q 003236 744 -DELVRVWSIGSGSKGECIHELSCT---------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLS 806 (837)
Q Consensus 744 -Dg~I~IwDl~s~~~~~~i~~~~~~---------------~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~~~~~l~ 806 (837)
++.|+.|+.... +..+.++ -.....++++++|..+++-. .++.|+.||+.++....+.
T Consensus 287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 779999987643 2222222 13478899999999555555 5779999998888877665
Q ss_pred cC---------------CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 807 AH---------------DKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 807 ~h---------------~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
++ -.....|++++++.++++-..++.|+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence 54 2468999999998888877778888765
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1.5e-10 Score=124.04 Aligned_cols=231 Identities=12% Similarity=0.103 Sum_probs=159.3
Q ss_pred ecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 003236 551 IPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP 629 (837)
Q Consensus 551 l~~H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~ 629 (837)
+..+..-..+..|++++ .++++...++.|+.||..++... .+ .....+.+++++++++++++ . ++.|.+||..++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 34444556789999954 46666667899999999887653 33 24567999999999995544 4 567999999876
Q ss_pred CceeEEee-c--cccceEEEEEcCCCCeEEEEEeC----------CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCE
Q 003236 630 DYSLRTFT-G--HSTTVMSLDFHPSKEDLLCSCDN----------NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGR 696 (837)
Q Consensus 630 ~~~~~~~~-~--h~~~V~sl~fspdg~~llasgs~----------Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~ 696 (837)
........ . ....+.+++++|+|..++.+... .+.|+.++.. ++.............++|+|+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCE
Confidence 53211111 1 12457899999998744433221 1344444443 444444444455788999999998
Q ss_pred EEEEEc-CCeEEEEEC--CCCeE-----EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003236 697 ILAAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 697 llags~-dg~I~iwDl--~s~~~-----~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
++++.. ++.|.+||+ .++.. ...+..+...+..++++++|.++++.. ++.|.+||..++ +.+..+...
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i~~p 239 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTVKLP 239 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEEECS
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEEECC
Confidence 876665 689999987 45432 223333446788999999998887776 678999999877 566677766
Q ss_pred CCceEEEEEe-CCCCEEEEEEcC
Q 003236 768 GNKFHSCVFH-PTFPSLLVIGCY 789 (837)
Q Consensus 768 ~~~I~sv~fs-pdg~~L~sgs~d 789 (837)
...+++|+|. |+++.|++++..
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCceEEEEeCCCCCEEEEEcCC
Confidence 6789999998 898888877754
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=1.1e-10 Score=131.40 Aligned_cols=232 Identities=9% Similarity=0.037 Sum_probs=164.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCcee
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL 633 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~~~~~~~ 633 (837)
.....|+|+++++++++...++.|++||.+++......... .... ++|++++..|+++..++ .|.+|+...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 46789999999998887777899999999988777665443 3334 99999999999988866 899999876543 2
Q ss_pred EEe----eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE----EecCCCe--e-EEEEecCCCEEEEEEc
Q 003236 634 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQSGA--T-QMRFQPRLGRILAAAI 702 (837)
Q Consensus 634 ~~~----~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~----~~~~~~i--~-sl~~sp~g~~llags~ 702 (837)
..+ ......+.+++++|++..+++ +..++.|+.||..++..... ....... . .++|+|+++.|+++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 222 224567889999996566665 66688999999987764332 1111222 2 9999997667666654
Q ss_pred -CCeEEEEECCCCeEEEEEcCCC---------------CCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEe
Q 003236 703 -ENYISILDVETQVCRLKLQGHK---------------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL 764 (837)
Q Consensus 703 -dg~I~iwDl~s~~~~~~l~~h~---------------~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~ 764 (837)
.+.|+.||.... +..+.++. .....++++++|.++++-. ++.|++|++.++ . +..+
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV 360 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence 688999998754 22332222 4588999999999777654 569999997665 2 3333
Q ss_pred ecC---------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 765 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 765 ~~~---------------~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
.++ -.....+++++++..+++-..++.|+.+++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 332 245788999999765555556668887765
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.42 E-value=5.4e-12 Score=138.42 Aligned_cols=259 Identities=9% Similarity=-0.000 Sum_probs=170.2
Q ss_pred CCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCeEEEEe-------ccCCCCeEEEEEcCCCCEEEEEeC-----CCeE
Q 003236 556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV 621 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs--~Dg~I~VWd~~t~~~~~~l-------~~h~~~I~~l~fspdg~~Latgs~-----Dg~I 621 (837)
..+..|+++++|+++++.. .++.++||.+.+++.. .+ ..|-..+.+++|+++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988864 2343555554455433 22 234568999999999876665443 5789
Q ss_pred EEEEcCCCCceeEEeec------cccceEEEEEcCCCCeEEEEEe---CCCcEEEEECCCCeeeeEEecCCCee--EEEE
Q 003236 622 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKCQSGAT--QMRF 690 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~------h~~~V~sl~fspdg~~llasgs---~Dg~I~vwDl~t~~~i~~~~~~~~i~--sl~~ 690 (837)
.+||+.+++. +..+.. +...+..+++++++..++++.. .++.|.+||+.+++..+.+..+.... ...+
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9999987663 333322 2245689999987666766665 67899999999888766553211110 1344
Q ss_pred ecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CC-eEEEEEcC---CCCC--ce---e
Q 003236 691 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIG---SGSK--GE---C 760 (837)
Q Consensus 691 sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg-~I~IwDl~---s~~~--~~---~ 760 (837)
.+++..+.+...++.+..|. ..+..|+|+|+++.|+++. ++ .|..++.. .+.. .. .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 45555555566666665442 2467899999999888877 44 55555532 1100 00 0
Q ss_pred EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc--CCCCeeEEEEeCCCCEEEEEECCC
Q 003236 761 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 761 i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~--h~~~V~sla~spdg~~LaSgs~DG 831 (837)
+.. .++......++++++|..+++...++.|.+||..+++...+.. +...+.+|+|.+++.++++.+..+
T Consensus 241 ~~~-~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 241 IER-YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp CEE-EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred eEe-cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 111 1223345678999999877777778899999986666543332 345689999999998888876443
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.41 E-value=4.5e-10 Score=122.20 Aligned_cols=221 Identities=15% Similarity=0.090 Sum_probs=154.5
Q ss_pred eEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 558 VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 558 V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
..+++|++++. ++++...++.|.+||..+++... +. ....|.+++|+++++++++. .+ .|.+||..+++.. .+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~--~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT--LH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE--EE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE--EE
Confidence 56789999754 56666678899999998876543 32 34679999999999877654 44 4999999876632 22
Q ss_pred ecc-----ccceEEEEEcCCCCeEEEEEeC-----CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCe
Q 003236 637 TGH-----STTVMSLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENY 705 (837)
Q Consensus 637 ~~h-----~~~V~sl~fspdg~~llasgs~-----Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~ 705 (837)
... ...+.+++++|+|..++.+.+. .+.|+.++ +++.............++|+++++.++++.. ++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 211 2468899999998744432221 24666666 5655444333345778999999988777654 689
Q ss_pred EEEEECC--CC-e-----EEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEE
Q 003236 706 ISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF 776 (837)
Q Consensus 706 I~iwDl~--s~-~-----~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~f 776 (837)
|.+||+. ++ . ....+......+.+++++++|.++++.. ++.|.+||. ++ ..+..+......+.+++|
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~af 278 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPAF 278 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEEEE
Confidence 9999986 55 2 2333333445678999999999887776 678999998 34 455556666667999999
Q ss_pred e-CCCCEEEEEEcCC
Q 003236 777 H-PTFPSLLVIGCYE 790 (837)
Q Consensus 777 s-pdg~~L~sgs~dg 790 (837)
+ +++..|++++..+
T Consensus 279 ~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 279 IGPDASRLLVTSARE 293 (326)
T ss_dssp ESTTSCEEEEEEBCT
T ss_pred ecCCCCEEEEEecCC
Confidence 8 8888887776544
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.38 E-value=4.8e-11 Score=134.50 Aligned_cols=247 Identities=13% Similarity=0.172 Sum_probs=173.0
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEEcCCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS 610 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~ 610 (837)
+..+..-..+ .++++|||++|+++. .++.|.++|..+++.+..+... ......+.|+||++
T Consensus 112 v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk 189 (426)
T 3c75_H 112 LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK 189 (426)
T ss_dssp EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS
T ss_pred EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 3444433344 799999999888775 4678999999999998877422 23456789999999
Q ss_pred EEEEEeC--CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE----EecCC-
Q 003236 611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKCQS- 683 (837)
Q Consensus 611 ~Latgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~----~~~~~- 683 (837)
+|+++.. ++.|.+.|+.+.+. +..+.-.. +....|++...+++.+.||.+.+.++.+++.... +....
T Consensus 190 ~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~ 264 (426)
T 3c75_H 190 NLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE 264 (426)
T ss_dssp EEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred EEEEEecCCCCeEEEEECCCCeE-EEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence 9999875 57899999998764 44443211 1334455555666777788888888866665532 11111
Q ss_pred C-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEE--EEcC----------CCCCEEEEEEcCCCCEEEEEe-------
Q 003236 684 G-ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNTSGEYLASVS------- 743 (837)
Q Consensus 684 ~-i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~--~l~~----------h~~~V~sl~~spdg~~Lasgs------- 743 (837)
. ...+.|.+++..++.....+.|.++|+....... .+.. .......+++++++..+++..
T Consensus 265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt 344 (426)
T 3c75_H 265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK 344 (426)
T ss_dssp CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence 1 1245678999988888888999999997654321 1110 011122368999988777654
Q ss_pred ----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEECCCCcEEEe
Q 003236 744 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL 805 (837)
Q Consensus 744 ----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~-~L~sgs-~dg~I~IwDl~s~~~~~l 805 (837)
++.|.++|+.+. +.+..+.. +.....++|+||++ .+++.. .++.|.++|+.+++.+..
T Consensus 345 hk~~s~~VsVID~~T~---kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 345 HKAASRFVVVLNAETG---ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred ccCCCCEEEEEECCCC---eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 247999999988 55555543 23578899999999 888888 488999999999998844
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=1.1e-10 Score=125.57 Aligned_cols=234 Identities=11% Similarity=0.114 Sum_probs=161.2
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
..+..+........|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC
Confidence 33444555678899999998 5667777899999997 444 34455566789999999999966665566889999986
Q ss_pred CCCceeEEeecc-----ccceEEEEEcCCCCeEEEE----EeC-------------CCcEEEEECCCCeeeeEEecCCCe
Q 003236 628 NPDYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFKCQSGA 685 (837)
Q Consensus 628 ~~~~~~~~~~~h-----~~~V~sl~fspdg~~llas----gs~-------------Dg~I~vwDl~t~~~i~~~~~~~~i 685 (837)
+.. ..+..+ ...+.+++++++|. ++++ +.. .+.|+.||..+++..... .....
T Consensus 116 -g~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p 190 (305)
T 3dr2_A 116 -GQA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP 190 (305)
T ss_dssp -SCE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred -CCE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence 442 222211 13467899999987 4444 221 256888888777655544 44567
Q ss_pred eEEEEecCCCEEEEEEcC------CeEEEEECCCCeE--EEEE-cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003236 686 TQMRFQPRLGRILAAAIE------NYISILDVETQVC--RLKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 756 (837)
Q Consensus 686 ~sl~~sp~g~~llags~d------g~I~iwDl~s~~~--~~~l-~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~ 756 (837)
..++|+|+++.|+++... +.|.+||+..... ...+ ......+..++++++|+++++. .+.|.+|+.. +
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g- 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G- 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S-
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C-
Confidence 789999999988888775 7899999876531 1111 1123445678999999965554 4459999974 3
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN 796 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwD 796 (837)
..+..+.... .+.+++|.++++.|++++.++ |+.++
T Consensus 268 --~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 268 --QLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp --CEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred --CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 3455554444 588899999999888888764 44444
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=9.6e-11 Score=125.95 Aligned_cols=234 Identities=6% Similarity=0.001 Sum_probs=158.9
Q ss_pred EEeccCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 003236 591 STLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669 (837)
Q Consensus 591 ~~l~~h~~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD 669 (837)
..+...........|+++++ ++++...++.|..|+.. +. ...+..+...+.+++++++|. ++++...++.|.+|+
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD 113 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEEC
Confidence 34444556778999999998 56666678999999984 33 445555667899999999987 554544567899999
Q ss_pred CCCCeeeeEEec-----CCCeeEEEEecCCCEEEE----EEc-------------CCeEEEEECCCCeEEEEEcCCCCCE
Q 003236 670 INNGSCAGVFKC-----QSGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKNQV 727 (837)
Q Consensus 670 l~t~~~i~~~~~-----~~~i~sl~~sp~g~~lla----gs~-------------dg~I~iwDl~s~~~~~~l~~h~~~V 727 (837)
.. ++....... ...+..+++.++|..+++ +.. .+.|+.||..+++..... .....
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 86 554332221 134678999999887765 221 256888888766544333 33567
Q ss_pred EEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 728 HSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 728 ~sl~~spdg~~Lasgs-D------g~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
..++|+||++.|+++. . +.|.+|++.... ......+ .........++++++|. |++++. +.|.+||...
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSDG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECTTS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECCCC
Confidence 8899999999777766 4 689999987642 1111111 11234456789999998 555554 4599999854
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 800 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
.....+..+. .+.+++|+++++.|+.++.++..++
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 4333444443 6899999999998888888765554
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=7.4e-10 Score=120.47 Aligned_cols=221 Identities=9% Similarity=0.019 Sum_probs=150.4
Q ss_pred CeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee
Q 003236 599 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (837)
Q Consensus 599 ~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 677 (837)
...+++|++++ .++++...++.|.+||..++.. ..+. ....+.+++|++++. +++++ +..|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~--~~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS--DDGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE--TTEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE--CCCEEEEECCCCcEEE
Confidence 45678899974 4556666788999999987543 2232 346799999999976 44343 3459999998887654
Q ss_pred EEecC-----CCeeEEEEecCCCEEEEEEc------CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C
Q 003236 678 VFKCQ-----SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D 744 (837)
Q Consensus 678 ~~~~~-----~~i~sl~~sp~g~~llags~------dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D 744 (837)
..... ..+..++++++++.+++... .+.|..+| +++... +..+......++|+|+++.|+.+. +
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~ 200 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKV 200 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCC
Confidence 43321 24788999999886655443 25677777 454433 222334678999999998776655 6
Q ss_pred CeEEEEEcC--CC-CC--ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEe
Q 003236 745 ELVRVWSIG--SG-SK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS 818 (837)
Q Consensus 745 g~I~IwDl~--s~-~~--~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~s 818 (837)
+.|.+||+. ++ .. ...+..+.........++++++|..+++...++.|.+||. +++.+ .+..+...+++++|+
T Consensus 201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence 799999986 44 21 1223333333456788999999986666656789999998 45544 555566679999998
Q ss_pred -CCCCEEEEEEC
Q 003236 819 -TVNGMVASASH 829 (837)
Q Consensus 819 -pdg~~LaSgs~ 829 (837)
++++.|+.++.
T Consensus 280 g~d~~~L~vt~~ 291 (326)
T 2ghs_A 280 GPDASRLLVTSA 291 (326)
T ss_dssp STTSCEEEEEEB
T ss_pred cCCCCEEEEEec
Confidence 88876655543
No 219
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=1.6e-11 Score=136.51 Aligned_cols=172 Identities=14% Similarity=0.122 Sum_probs=137.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-----------EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
.++.+++++...+|++|+.++ ++||+++... ....+ .+.. |+.|+| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 589999999999999999874 6669865332 11222 3566 999999 89999999 889999999
Q ss_pred cCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCe
Q 003236 626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENY 705 (837)
Q Consensus 626 l~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~ 705 (837)
+.+... ......|...|.++.+.+.. ++++..||.|.+||+.++.... ....|.|++|+|+| ++++..||.
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSC
T ss_pred chhhhc-cCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCc
Confidence 987553 45566677788888877542 6678889999999999887654 34689999999998 788999999
Q ss_pred EEEEECCCCeE--EEEE------c---CCCCCEEEEEEcCCCCEEEEEe
Q 003236 706 ISILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 706 I~iwDl~s~~~--~~~l------~---~h~~~V~sl~~spdg~~Lasgs 743 (837)
|++|+...... ..++ . +|...|.+|+|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999988775 5566 3 3778999999999999988743
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.32 E-value=2.1e-11 Score=135.09 Aligned_cols=254 Identities=11% Similarity=0.054 Sum_probs=172.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEEcCCCC
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS 610 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~~~~l~~h-------~~~I~~l~fspdg~ 610 (837)
+..+.....+ .+.|+|||++|+++. .++.|.+||+.+++.+.++..+ ......++|+|||+
T Consensus 59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk 136 (368)
T 1mda_H 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence 4444444445 799999999988886 3689999999999999988643 13467899999999
Q ss_pred EEEEEeC--CCeEEE--EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-----Ceeee----
Q 003236 611 RLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAG---- 677 (837)
Q Consensus 611 ~Latgs~--Dg~I~I--WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-----~~~i~---- 677 (837)
+|+++.. +..|.+ +|+.+ +..+... + |+.+.|++...+++.+.|+.+.+.|+.+ ++.+.
T Consensus 137 ~lyVan~~~~~~v~V~~iD~~t----v~~i~v~-~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~ 208 (368)
T 1mda_H 137 CLLFFLFGSSAAAGLSVPGASD----DQLTKSA-S---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208 (368)
T ss_dssp CEEEEECSSSCEEEEEETTTEE----EEEEECS-S---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred EEEEEccCCCCeEEEEEEchhh----ceEEECC-C---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence 9999875 457888 88876 2333211 1 1223466666677777889998899986 44332
Q ss_pred EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--eEEEEEcCC----------CCCEEEEEEcCCCCEEEEEe--
Q 003236 678 VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQGH----------KNQVHSVCWNTSGEYLASVS-- 743 (837)
Q Consensus 678 ~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~--~~~~~l~~h----------~~~V~sl~~spdg~~Lasgs-- 743 (837)
.+....... . .++++.++..+. +.|.+.|+... +.+..+... ......++|++|++.++++.
T Consensus 209 ~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 209 AQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp TSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 111111112 3 777787777777 99999999754 233222111 01112268999998877643
Q ss_pred C--------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEE-E-cCCeEEEEECCCCcEEEeccCCCCee
Q 003236 744 D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI-G-CYETLELWNMTENKTLTLSAHDKLVS 813 (837)
Q Consensus 744 D--------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sg-s-~dg~I~IwDl~s~~~~~l~~h~~~V~ 813 (837)
. +.+.++|+.+. +.+..+... .....++|+||++.++++ . .++.|.++|+.+++.+....-.....
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVG---QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSC---CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred ccCcccccCCCEEEEECCCC---eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence 2 35779999988 455555432 268899999999865554 4 48999999999999986555555666
Q ss_pred EEEEeC
Q 003236 814 SLAAST 819 (837)
Q Consensus 814 sla~sp 819 (837)
.+++.+
T Consensus 361 ~i~~~~ 366 (368)
T 1mda_H 361 SLSVQN 366 (368)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 777654
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.31 E-value=2.3e-09 Score=118.39 Aligned_cols=255 Identities=13% Similarity=0.077 Sum_probs=166.0
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccce--
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-- 643 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V-- 643 (837)
++..|++++.++.|+.+|.++++.+................ +..+++++.++.|..+|..+++. +..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL 178 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence 35578888899999999999999887665443322222222 45788888999999999998775 33332221110
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-----E---EEEec--CCCEEEEEEcCCeEEEEE
Q 003236 644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-----Q---MRFQP--RLGRILAAAIENYISILD 710 (837)
Q Consensus 644 ---~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-----s---l~~sp--~g~~llags~dg~I~iwD 710 (837)
...... +. .++.+..++.|..+|..+++.+..+....... . +...| .++.+++++.++.|..+|
T Consensus 179 ~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 179 RGESAPTTA--FG-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCCEEE--TT-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred cCCCCcEEE--CC-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence 122222 23 45567778999999999999988776432100 0 00111 357788888899999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003236 711 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 711 l~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-~~~~I~sv~fspdg~~L~sgs~ 788 (837)
.++++.+..... ....++... +..|++++ ++.|..+|..++ +.+..... ....+....+. +..|++++.
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~ 326 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVLY--NGNLVVGDS 326 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEEE--TTEEEEECT
T ss_pred CCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEEE--CCEEEEEeC
Confidence 999988877652 334455443 45555555 889999999988 44444432 12222333332 467999999
Q ss_pred CCeEEEEECCCCcEE-EeccCCCCee-EEEEeCCCCEEEEEECCCcEEEeC
Q 003236 789 YETLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 789 dg~I~IwDl~s~~~~-~l~~h~~~V~-sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.|++||..+++.+ ........+. ..... +..|+.++.||.|+.||
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 999999999999987 3333233332 22332 56788889999999885
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.26 E-value=8.6e-14 Score=154.75 Aligned_cols=223 Identities=14% Similarity=0.054 Sum_probs=121.8
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecccc-ceE
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM 644 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~-~V~ 644 (837)
++..|++++.|+.|+.||..+++.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++. +..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence 577899999999999999999999988865 5566666667788888888999999999987764 333322211 111
Q ss_pred -EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCC
Q 003236 645 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 723 (837)
Q Consensus 645 -sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h 723 (837)
+..+. .+. .+++++.++.|+.||.++|+.+..+.... ...++|+++.+++++.++.|+.||.++++.+..+..+
T Consensus 85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF---ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp TCSCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC---cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 11111 223 45577779999999999999988776543 2345678889999999999999999998766554421
Q ss_pred CCCEEEEEEcCC----CCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEE--EEcCCeEEEEEC
Q 003236 724 KNQVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV--IGCYETLELWNM 797 (837)
Q Consensus 724 ~~~V~sl~~spd----g~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~s--gs~dg~I~IwDl 797 (837)
. ....+++.+ +.+++++.|+.|+.||..++ +.+..+......+...++++++...+. ...++.++.+|.
T Consensus 160 ~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~ 234 (369)
T 2hz6_A 160 D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTF 234 (369)
T ss_dssp E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHH
T ss_pred c--ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeeh
Confidence 1 122333333 44444334999999999988 455555433333333445556542110 111345666666
Q ss_pred CCCc
Q 003236 798 TENK 801 (837)
Q Consensus 798 ~s~~ 801 (837)
.+++
T Consensus 235 ~tG~ 238 (369)
T 2hz6_A 235 MSGE 238 (369)
T ss_dssp HHHH
T ss_pred hcCC
Confidence 5555
No 223
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.25 E-value=6.4e-10 Score=133.66 Aligned_cols=266 Identities=11% Similarity=0.096 Sum_probs=175.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC----------e-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~----------I-~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.++.|+.+|..+++.+..+..+... + ..+.+ ++..|++++.|+.|+.+|..+++..-..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777888899999999999999887543221 0 11222 3567888999999999999998864333
Q ss_pred eec-cccceEEEEEcC--CCCeEEEEEe-----CCCcEEEEECCCCeeeeEEecCC------------------------
Q 003236 636 FTG-HSTTVMSLDFHP--SKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS------------------------ 683 (837)
Q Consensus 636 ~~~-h~~~V~sl~fsp--dg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~------------------------ 683 (837)
... +......+...| .+..+++.++ .++.|+.||.++|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 222 111111111111 1233444332 36899999999999998876310
Q ss_pred --------CeeEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC-------CCE
Q 003236 684 --------GATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQV 727 (837)
Q Consensus 684 --------~i~sl~~sp~g~~llags~dg-------------------~I~iwDl~s~~~~~~l~~--h~-------~~V 727 (837)
....+.++++.+.++++..++ .|..||.++++.+..+.. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 012578899889999888775 399999999999988764 22 122
Q ss_pred EEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-----------------------------------
Q 003236 728 HSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG----------------------------------- 768 (837)
Q Consensus 728 ~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~----------------------------------- 768 (837)
.......+|+ +|+.++ +|.|+++|..+++ .+.......
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE---LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCC---EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 2223333564 677777 9999999999984 332111100
Q ss_pred ----CceEEEEEeCCCCEEEEEEc---------------------------------------------CCeEEEEECCC
Q 003236 769 ----NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNMTE 799 (837)
Q Consensus 769 ----~~I~sv~fspdg~~L~sgs~---------------------------------------------dg~I~IwDl~s 799 (837)
.....++|+|+...+++... ++.|+.||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 01123688998888877632 36799999999
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 800 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.+-...+..++..-.+...+.+|++++.||.|+.||
T Consensus 465 G~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 465 QQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp TEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence 99883333334444446667788999999999999996
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.24 E-value=8.6e-10 Score=132.27 Aligned_cols=263 Identities=13% Similarity=0.100 Sum_probs=180.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC-----------eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~-----------I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.++.|+.+|..+++.+..+...... ...+++ ++..|++++.|+.|+.+|..+++. +..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~-~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKE-VWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE-EEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCE-Eee
Confidence 446777777899999999999999877543210 112333 456888899999999999999875 333
Q ss_pred eecc-c----cceEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeeEEecCCCe-------------------
Q 003236 636 FTGH-S----TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA------------------- 685 (837)
Q Consensus 636 ~~~h-~----~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~~i------------------- 685 (837)
+..+ . ..+.+ ..+. +..+++.++ .++.|+.||.++|+.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 3332 1 11211 1111 344443333 2689999999999999887652211
Q ss_pred --------------eEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC------
Q 003236 686 --------------TQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------ 724 (837)
Q Consensus 686 --------------~sl~~sp~g~~llags~dg-------------------~I~iwDl~s~~~~~~l~~--h~------ 724 (837)
..+.++++++.++++..++ .|..+|.++++.+..+.. |.
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 3578899999998887654 599999999999888764 21
Q ss_pred -CCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-----------CCce-----------------
Q 003236 725 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-----------GNKF----------------- 771 (837)
Q Consensus 725 -~~V~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-----------~~~I----------------- 771 (837)
.....+....+| ..|+.++ +|.|+++|..+++ .+..+... ...+
T Consensus 312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC---EeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122233334467 5777777 9999999999984 43333211 1111
Q ss_pred -------EEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEECCCCc
Q 003236 772 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK 801 (837)
Q Consensus 772 -------~sv~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~s~~ 801 (837)
..++|+|+...+++...+ +.|..||+.+++
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 156889998888876542 689999999999
Q ss_pred EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 802 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 802 ~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+-...+..++....+..++.++++++.||.|++||
T Consensus 469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 884444555566666777888999999999999986
No 225
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.24 E-value=3.2e-10 Score=121.98 Aligned_cols=258 Identities=10% Similarity=0.006 Sum_probs=171.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.+.++.+.++|. |.+++.+ |..||. +++.+..+......+....+. +..|++++.++.|..+|.. ++. ...+
T Consensus 61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~~ 132 (330)
T 3hxj_A 61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWRF 132 (330)
T ss_dssp EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEEE
T ss_pred cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEEE
Confidence 356777777775 4445444 888885 555443333232223333333 5568888889999999988 553 4444
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
..+...+.++...+++. ++.++.++.|..||.. ++.+..+... ..+.++.+.+++. +++++ +.|..|| .+++
T Consensus 133 ~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGT 205 (330)
T ss_dssp ECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSC
T ss_pred cCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCc
Confidence 44555567777777665 3356677999999999 8777766653 3456666666665 44444 8899999 7777
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 716 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 716 ~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
.+..+......+.++..++++.+++++.++.|..+|. ++ ..+..+......+..+.+.+++ .|++++.++.|..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAI 280 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEE
T ss_pred EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEE
Confidence 7777766667788899998888777666888888874 33 3444444444444455666565 48888888899999
Q ss_pred ECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 796 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 796 Dl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
|. +++.+ ........+.++...+++.+ ..++.+|.|++.
T Consensus 281 d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~~G~~~~~ 320 (330)
T 3hxj_A 281 NP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTRNGKFYAL 320 (330)
T ss_dssp CT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECTTSCEEEE
T ss_pred CC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcCCCeEEEE
Confidence 96 56554 44445566778888777764 557889988764
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.24 E-value=1.8e-10 Score=127.57 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=164.8
Q ss_pred cEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEEcCCCCceeEEeecc-------c
Q 003236 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S 640 (837)
Q Consensus 578 ~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs----------~Dg~I~IWDl~~~~~~~~~~~~h-------~ 640 (837)
+|.++|..+++.+.++.....+ .+.|+||+++++++. .++.|.+||+.+.+. +..+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence 8889999999999998766566 799999999999886 378999999999775 5554322 1
Q ss_pred cceEEEEEcCCCCeEEEEEeC-CCcEEE--EECCCCeeeeEEecCCCeeEEEEecCC-CEEEEEEcCCeEEEEECCC---
Q 003236 641 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKCQSGATQMRFQPRL-GRILAAAIENYISILDVET--- 713 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~-Dg~I~v--wDl~t~~~i~~~~~~~~i~sl~~sp~g-~~llags~dg~I~iwDl~s--- 713 (837)
.....+.|+|||++++++... +..|.+ +|+.+ +..+..... +.+.|++ ..+++.+.|+.+.++|+++
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 346789999999988866543 467888 99877 455544322 2233444 3455666788888899887
Q ss_pred --CeEEEE----EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecC-------C---CceEEEEEe
Q 003236 714 --QVCRLK----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-------G---NKFHSCVFH 777 (837)
Q Consensus 714 --~~~~~~----l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~-------~---~~I~sv~fs 777 (837)
++.... +.....+. .+..++.++++.. +.|.+.|+.+... ..+..+... . .....++|+
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEc
Confidence 432211 11112333 3333344455555 8899999865321 222222110 0 111226899
Q ss_pred CCCCEEEEEEc-C--------CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003236 778 PTFPSLLVIGC-Y--------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK 837 (837)
Q Consensus 778 pdg~~L~sgs~-d--------g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~-~LaSgs-~DG~I~IWd 837 (837)
++++.++++.. + +.+.++|+.+.+.+....-.....+|+|++|++ +++++. .++.|.++|
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 99999988754 2 356799999999884443334689999999998 566666 589999986
No 227
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.22 E-value=4.7e-09 Score=115.80 Aligned_cols=255 Identities=8% Similarity=0.038 Sum_probs=164.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccC---------CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEee
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT 637 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h---------~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~ 637 (837)
+..|++++.++.|..||.++++.+..+... ...+.+.. ..++..|++++.++.|..+|..+++. +..+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTV-AWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCE-EEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCE-EEEEe
Confidence 557788888999999999999988666432 12232221 22456788889999999999998875 33333
Q ss_pred ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee------EEEEecCCCEEEEEEcCCeEEEEEC
Q 003236 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT------QMRFQPRLGRILAAAIENYISILDV 711 (837)
Q Consensus 638 ~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~------sl~~sp~g~~llags~dg~I~iwDl 711 (837)
............ + . .++.++.++.|..+|..+++.+..+.....+. ...+. ++.+++++.++.|..+|.
T Consensus 131 ~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 131 VAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp CSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred CCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 222222222222 2 3 45567779999999999999998887644331 22222 467888888999999999
Q ss_pred CCCeEEEEEcCCCCC----EE---EEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 712 ETQVCRLKLQGHKNQ----VH---SVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~----V~---sl~~sp--dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
.+++.+......... +. .+...| .+..+++++ ++.|..+|..++ +.+..... .....+.. ++.
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~~--~~~~~~~~--~~~ 278 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKREL--GSVNDFIV--DGN 278 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEECC--CCEEEEEE--ETT
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeeccC--CCCCCceE--ECC
Confidence 999888776532110 00 010111 244556666 899999999888 44444332 23444444 356
Q ss_pred EEEEEEcCCeEEEEECCCCcEE-Eec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 782 SLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 782 ~L~sgs~dg~I~IwDl~s~~~~-~l~-~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|++++.++.|..+|..+++.+ ... .....+..+... +..|+.++.+|.|.+||
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence 7899999999999999999877 332 222233334433 56788888889888875
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=6.5e-10 Score=133.78 Aligned_cols=236 Identities=13% Similarity=0.105 Sum_probs=158.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-------
Q 003236 595 EHTQWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------- 662 (837)
Q Consensus 595 ~h~~~I~~l~fspdg~~Latgs-----~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D------- 662 (837)
+|...+..++|+|||++||.+. .+..|+|||+.+++.....+.. .....++|+ |++.++++...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 3556788999999999988543 3357999999997743222221 123578899 988777665432
Q ss_pred -----CcEEEEECCCCee--eeEEecC----CCeeEEEEecCCCEEEEEEcC----CeEEEEECCCCe-EEEEEcCCCCC
Q 003236 663 -----SEIRYWSINNGSC--AGVFKCQ----SGATQMRFQPRLGRILAAAIE----NYISILDVETQV-CRLKLQGHKNQ 726 (837)
Q Consensus 663 -----g~I~vwDl~t~~~--i~~~~~~----~~i~sl~~sp~g~~llags~d----g~I~iwDl~s~~-~~~~l~~h~~~ 726 (837)
..|++|++.++.. ...+... .....+.|+|++++|+..... +.|+++|+.++. ....+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 3499999987643 2233322 236789999999998766542 489999998763 34455556666
Q ss_pred EEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEECC
Q 003236 727 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT 798 (837)
Q Consensus 727 V~sl~~spdg~~Lasgs--D---g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg---~I~IwDl~ 798 (837)
.... |++++..|+..+ + +.|.++|+.++... ....+..+...+. .|++++++|++...++ .|++||+.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 6555 666666555544 3 47999999876431 1233444555554 8999999888777655 79999998
Q ss_pred CCcEEEec-cCCCCeeEEEEeCCCCEEEEEECC----CcEEEeC
Q 003236 799 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK 837 (837)
Q Consensus 799 s~~~~~l~-~h~~~V~sla~spdg~~LaSgs~D----G~I~IWd 837 (837)
.+....+. .+.+.+..+.++++++.|+....+ +.|+.||
T Consensus 359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 76655443 345567788888888766655444 6777775
No 229
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=4.1e-09 Score=126.60 Aligned_cols=256 Identities=11% Similarity=0.061 Sum_probs=166.4
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccC--CCCeEEEEEcC---CCCEEEEEe------CCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h--~~~I~~l~fsp---dg~~Latgs------~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.|+.|+.+|.++++.+..+... ......+..+| ++ .+++++ .++.|+.||..+++..-..
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 557888899999999999999998766532 11111111122 44 444443 3789999999998853332
Q ss_pred eec------------------------------cccceEEEEEcCCCCeEEEEEeCCC-------------------cEE
Q 003236 636 FTG------------------------------HSTTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 666 (837)
Q Consensus 636 ~~~------------------------------h~~~V~sl~fspdg~~llasgs~Dg-------------------~I~ 666 (837)
... +......++++|+.+ +++.+..++ .|.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 211 001112578888766 455665554 499
Q ss_pred EEECCCCeeeeEEecCC----------CeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC-CC------
Q 003236 667 YWSINNGSCAGVFKCQS----------GATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQ------ 726 (837)
Q Consensus 667 vwDl~t~~~i~~~~~~~----------~i~sl~~sp~g~---~llags~dg~I~iwDl~s~~~~~~l~~h~-~~------ 726 (837)
.||.++|+.+..+.... .........++. .+++++.+|.|+++|.++++.+....... ..
T Consensus 279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 99999999998887421 122222233444 67888889999999999998875433211 00
Q ss_pred --------------------------------EEEEEEcCCCCEEEEEe-------------------------------
Q 003236 727 --------------------------------VHSVCWNTSGEYLASVS------------------------------- 743 (837)
Q Consensus 727 --------------------------------V~sl~~spdg~~Lasgs------------------------------- 743 (837)
-..++|+|+..++++..
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 11268888888777652
Q ss_pred ---------------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eecc
Q 003236 744 ---------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA 807 (837)
Q Consensus 744 ---------------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~ 807 (837)
++.|+.||+.++ +.+..+..+. .+....+...+..+++++.|+.|+.||.++++.+ .+..
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence 267999999988 5555554433 2333466667888999999999999999999988 4433
Q ss_pred C-CCCeeEEEEeCCCC-EEEEEE
Q 003236 808 H-DKLVSSLAASTVNG-MVASAS 828 (837)
Q Consensus 808 h-~~~V~sla~spdg~-~LaSgs 828 (837)
. .....-+.|..+|+ |+++.+
T Consensus 515 ~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 515 ASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp SSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEEEe
Confidence 3 22234467778887 444443
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=2.6e-09 Score=128.07 Aligned_cols=254 Identities=10% Similarity=0.043 Sum_probs=170.4
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccC-C----CCeEE-EEEcCCCCEEEEEeC------CCeEEEEEcCCCCcee
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL 633 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~~~~~~~ 633 (837)
++..|++++.|+.|+.+|..+++.+..+..+ . ..+.+ ... .+..+++++. ++.|+.||..+++...
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 3568888899999999999999999877654 1 11221 111 2345555543 7999999999987533
Q ss_pred EEeecc-------------------------------ccceEEEEEcCCCCeEEEEEeCCC-------------------
Q 003236 634 RTFTGH-------------------------------STTVMSLDFHPSKEDLLCSCDNNS------------------- 663 (837)
Q Consensus 634 ~~~~~h-------------------------------~~~V~sl~fspdg~~llasgs~Dg------------------- 663 (837)
+..... ......++++++++.++ .+..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeeeE
Confidence 322211 01113578888876554 444342
Q ss_pred cEEEEECCCCeeeeEEecCC----------CeeEEEEecCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCCC-----
Q 003236 664 EIRYWSINNGSCAGVFKCQS----------GATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKN----- 725 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~~----------~i~sl~~sp~g---~~llags~dg~I~iwDl~s~~~~~~l~~h~~----- 725 (837)
.|..+|.++++.+..+.... ....+....+| ..+++++.+|.|+++|.++++.+..+.....
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 59999999999998877421 12233334466 5788888999999999999998877653211
Q ss_pred ------CE------------------------EEEEEcCCCCEEEEEe-C------------------------------
Q 003236 726 ------QV------------------------HSVCWNTSGEYLASVS-D------------------------------ 744 (837)
Q Consensus 726 ------~V------------------------~sl~~spdg~~Lasgs-D------------------------------ 744 (837)
++ ..++|+|+..++++.. +
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 11 1468899888887753 2
Q ss_pred -------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-Eec-cCC
Q 003236 745 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD 809 (837)
Q Consensus 745 -------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~-~h~ 809 (837)
+.|..||+.++ +.+..+.. ...+....+...+..+++++.++.|++||..+++.+ .+. .+.
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 67999999988 55555443 334445567778888999999999999999999988 333 333
Q ss_pred CCeeEEEEeCCCCEEEE
Q 003236 810 KLVSSLAASTVNGMVAS 826 (837)
Q Consensus 810 ~~V~sla~spdg~~LaS 826 (837)
....-+.|..+|+.+++
T Consensus 520 ~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 520 VVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cccCCEEEEeCCEEEEE
Confidence 33344566778874443
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.19 E-value=3.6e-08 Score=103.42 Aligned_cols=247 Identities=9% Similarity=0.003 Sum_probs=161.3
Q ss_pred CEEEEEECCCcEEEEeCCCCeE-----EEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeEEeecccc
Q 003236 568 KLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST 641 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~-----~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~h~~ 641 (837)
.+|+.+.. +.|+.++++.... ...+......+..++|++++..|+.+. .++.|.++++..... .........
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence 45555543 4788888765432 112222234578999999766665554 578999999986542 222322235
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEEEecCCCEEEEEEcC---CeEEEEECCCCeEE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR 717 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~~~~ 717 (837)
....+++++++..++++....+.|.++++............ .....++++|+++.++++... +.|..+++......
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~ 159 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence 67899999987778877777889999999754332222222 467899999988888777754 68888888643322
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 003236 718 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL 794 (837)
Q Consensus 718 ~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~I 794 (837)
............+++++++..|+.+. .+.|.++|+... .....+. .......+++. +..|+++.. .+.|.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 22223335688999999887777666 679999998753 2222222 23334566654 556777665 469999
Q ss_pred EECCCCcEEEe-ccCC-CCeeEEEEeCCCC
Q 003236 795 WNMTENKTLTL-SAHD-KLVSSLAASTVNG 822 (837)
Q Consensus 795 wDl~s~~~~~l-~~h~-~~V~sla~spdg~ 822 (837)
+|..+++.+.. .... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 99999987743 3222 2478888888764
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.16 E-value=3.4e-08 Score=110.47 Aligned_cols=223 Identities=12% Similarity=0.076 Sum_probs=156.0
Q ss_pred EEc--CCCCEEEE-EECCCcEEEEeCCCC----eEEEEec------c-CCCCeEEEEEcCCCCEEEEEeCC------CeE
Q 003236 562 HFS--PDGKLLAT-GGHDKKAVLWCTESF----TVKSTLE------E-HTQWITDVRFSPSLSRLATSSAD------RTV 621 (837)
Q Consensus 562 ~fS--pdg~~Las-gs~Dg~I~VWd~~t~----~~~~~l~------~-h~~~I~~l~fspdg~~Latgs~D------g~I 621 (837)
.++ .++++|++ +..+++|+|+|+.+. +...+++ . ....-..+...|+| +++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 336 78887665 456789999998755 6777773 1 11245667888999 77766655 789
Q ss_pred EEEEcCCCCceeEEeecc--c-cceEEEEEcCCCCeEEEEEe-------------------CCCcEEEEECCCCeeeeEE
Q 003236 622 RVWDTENPDYSLRTFTGH--S-TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVF 679 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h--~-~~V~sl~fspdg~~llasgs-------------------~Dg~I~vwDl~t~~~i~~~ 679 (837)
.++|..+.+. +..+... . ..-+.+.|+|+++.++ +.. .+.+|.+||+.+++.+.++
T Consensus 167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred EEEECCCCeE-EEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999998764 4444422 1 2345688899988555 442 3689999999999888888
Q ss_pred ecC---CCeeEEEE--ecCCCEEEEEEc------CCeEEEEECCCCe--EEEEE--cCC----------------CCCEE
Q 003236 680 KCQ---SGATQMRF--QPRLGRILAAAI------ENYISILDVETQV--CRLKL--QGH----------------KNQVH 728 (837)
Q Consensus 680 ~~~---~~i~sl~~--sp~g~~llags~------dg~I~iwDl~s~~--~~~~l--~~h----------------~~~V~ 728 (837)
... .....+.| +|+++++++++. ++.|.+|..+.+. ....+ ... ...+.
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence 874 23455656 999999888875 4678776655442 11111 110 24567
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 003236 729 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 729 sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~--------------~I~sv~fspdg~~L~sgs 787 (837)
.|.+++||++|+++. .+.|.+||+......+.+..+...+. .-..+.++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 899999999999988 77999999975544455655554321 357899999999999998
No 233
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.15 E-value=6.1e-10 Score=123.85 Aligned_cols=169 Identities=11% Similarity=0.056 Sum_probs=130.0
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-----------eeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEE
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----------CAGVFKCQSGATQMRFQPRLGRILAAAIENYISILD 710 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~-----------~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwD 710 (837)
.+..+++++... ++++|+.+ .+++|++.... ......... |+.++| ++..++++ .++.|++||
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999876 55577766 56779865332 223445556 999999 88888888 889999999
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003236 711 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 711 l~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d 789 (837)
+.+.........|...+.++.+.+.. ++++. ||.|.+||+..+. ... +...|++++|+|+| +++|..|
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---TKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---EEE----EEESEEEEEECSSE--EEEEETT
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---ccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 98766555666677889888877653 55555 9999999998763 222 34579999999999 7889999
Q ss_pred CeEEEEECCCCcE--E-Ee------c---cCCCCeeEEEEeCCCCEEEEE
Q 003236 790 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASA 827 (837)
Q Consensus 790 g~I~IwDl~s~~~--~-~l------~---~h~~~V~sla~spdg~~LaSg 827 (837)
|.|++|+...+.. . .+ . +|...|.+|.|.+++.++++=
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999999888774 2 33 2 378899999999999888763
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=3.5e-09 Score=122.19 Aligned_cols=257 Identities=9% Similarity=0.014 Sum_probs=178.8
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEecc---------------------------------CC------CCeEEEEEcC---
Q 003236 570 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------HT------QWITDVRFSP--- 607 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~~~~l~~---------------------------------h~------~~I~~l~fsp--- 607 (837)
|.+|+..|.|+|+-+.+++.+..+.. +. +....+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 56788889999998888877766520 01 1122344554
Q ss_pred --CCCEEEEEeC-CCeEEEEEcCCCCceeEEee-ccccceEEEEE-c-CCCCeEEEEE-----------------eCCCc
Q 003236 608 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE 664 (837)
Q Consensus 608 --dg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~-~h~~~V~sl~f-s-pdg~~llasg-----------------s~Dg~ 664 (837)
||++|+++.. +..|.+.|+.+.+. ...+. .....+..+++ . |+++++++++ ..++.
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7888877765 55799999998653 34232 22345788888 4 8988887764 33568
Q ss_pred EEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCC--------------------------------------eE
Q 003236 665 IRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIEN--------------------------------------YI 706 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg--------------------------------------~I 706 (837)
|.++|..+.+.+..+........++++|+++++++++.+. .|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 9999999999999998766778899999999999988553 36
Q ss_pred EEEECCC--CeE-EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC--------CceeEEEeecCCCceEE
Q 003236 707 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHS 773 (837)
Q Consensus 707 ~iwDl~s--~~~-~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~--------~~~~i~~~~~~~~~I~s 773 (837)
.+.|.++ ++. +..+.. .....++.++|||++++++. ++.|.++|+.+.. ....+.....-+.....
T Consensus 257 ~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h 335 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH 335 (595)
T ss_dssp EEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred EEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence 7777776 433 333432 23567899999999999988 7899999998541 01122222234566888
Q ss_pred EEEeCCCCEEEEEE-cCCeEEEEECCC----------CcEE-EeccCCCCe-----eEEEEeCCCCEEEEEEC
Q 003236 774 CVFHPTFPSLLVIG-CYETLELWNMTE----------NKTL-TLSAHDKLV-----SSLAASTVNGMVASASH 829 (837)
Q Consensus 774 v~fspdg~~L~sgs-~dg~I~IwDl~s----------~~~~-~l~~h~~~V-----~sla~spdg~~LaSgs~ 829 (837)
++|+++| ++++.. -++.|.+||+.. ...+ ++..|-.+- .++.++|||++|+++..
T Consensus 336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999999 666555 477999999876 4444 444443321 22345799999998864
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=7.8e-10 Score=118.93 Aligned_cols=256 Identities=10% Similarity=0.052 Sum_probs=168.4
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccc
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS 640 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~ 640 (837)
+.+..++ .|.+++.++.|..|| .+++....+..+...+.++...+++. |++++.+ |..||. +++. +..+....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~~ 97 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTKK 97 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC--
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECCC
Confidence 4455566 455667788999999 88888776665555667777777665 5555544 888886 3332 22222222
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCC-eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 719 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~-i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~ 719 (837)
..+....+. + . .++.++.++.|..+|.. ++....+..... +.++...+++. +++++.++.|..||.. ++.+..
T Consensus 98 ~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 98 AIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp ---CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence 222333333 3 3 34467778899999998 777766664333 45566665544 7777888999999999 877777
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 720 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 720 l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
+......+.++.+.+++.+++++ +.|..|| .++ ..+.........+.++++.+++. |++++.++.|..+|...
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g 244 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG 244 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence 76666677788888888866655 8899999 555 44445554556678888888875 77778888899998544
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 800 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.....+......+.++.+.+++ .|..++.+|.|..+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence 4433444444445556665555 455677787777765
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.07 E-value=6.2e-08 Score=108.33 Aligned_cols=222 Identities=9% Similarity=-0.030 Sum_probs=149.9
Q ss_pred EEc--CCCCEEEE-EeCCCeEEEEEcCCCC---ceeEEee------c-cccceEEEEEcCCCCeEEEEEeCC------Cc
Q 003236 604 RFS--PSLSRLAT-SSADRTVRVWDTENPD---YSLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SE 664 (837)
Q Consensus 604 ~fs--pdg~~Lat-gs~Dg~I~IWDl~~~~---~~~~~~~------~-h~~~V~sl~fspdg~~llasgs~D------g~ 664 (837)
.++ .+.++|++ +..+++|+|+|+.+.. ...+++. . .......+.+.|++ +++++..+ +.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCe
Confidence 346 77777665 4557899999997541 1233331 1 11245567888998 55565544 78
Q ss_pred EEEEECCCCeeeeEEecCC----CeeEEEEecCCCEEEEEE-------------------cCCeEEEEECCCCeEEEEEc
Q 003236 665 IRYWSINNGSCAGVFKCQS----GATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQ 721 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~----~i~sl~~sp~g~~llags-------------------~dg~I~iwDl~s~~~~~~l~ 721 (837)
|.++|.++++.+..+.... -...+.|+|+++.+++.. .++.|.+||+.+++.+.++.
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 9999999999999887432 234588899999888875 36899999999998888776
Q ss_pred CCC--CCEEEEEE--cCCCCEEEEEeC-------CeEEEEEcCCCCCceeEEEe--ec----------------CCCceE
Q 003236 722 GHK--NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SC----------------TGNKFH 772 (837)
Q Consensus 722 ~h~--~~V~sl~~--spdg~~LasgsD-------g~I~IwDl~s~~~~~~i~~~--~~----------------~~~~I~ 772 (837)
... .....|.| +|++++++++.. ++|.+|....+. ...+..+ .. ......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa 324 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT 324 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCcee
Confidence 421 23455656 999998776543 478777665431 1222221 11 024567
Q ss_pred EEEEeCCCCEEEEEEc-CCeEEEEECCCC---cEEEeccCC---------------CCeeEEEEeCCCCEEEEEE
Q 003236 773 SCVFHPTFPSLLVIGC-YETLELWNMTEN---KTLTLSAHD---------------KLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 773 sv~fspdg~~L~sgs~-dg~I~IwDl~s~---~~~~l~~h~---------------~~V~sla~spdg~~LaSgs 828 (837)
.+.+++|+++|+++.. .+.|.+||+.+. +.+....-. +....++++|||++|+++.
T Consensus 325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 8999999999999887 459999998633 333211111 1368899999999999887
No 237
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.07 E-value=3.4e-09 Score=116.03 Aligned_cols=220 Identities=9% Similarity=0.034 Sum_probs=150.9
Q ss_pred CCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeEEe-------eccccceEEEEEcCCCCeEEEEEeC-----CC
Q 003236 598 QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDN-----NS 663 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~--Dg~I~IWDl~~~~~~~~~~-------~~h~~~V~sl~fspdg~~llasgs~-----Dg 663 (837)
..+..|+++++|+++++... ++.++||.+.+++ +..+ ..+-..+.++++++++. ++++-.. +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence 67899999999998888642 3435666665332 3322 23456799999999965 4444322 57
Q ss_pred cEEEEECCCCeeeeEEecC-------CCeeEEEEecCCCEEEEEE----cCCeEEEEECCCCeEEEEEcCCCCCEE-EEE
Q 003236 664 EIRYWSINNGSCAGVFKCQ-------SGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC 731 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~-------~~i~sl~~sp~g~~llags----~dg~I~iwDl~s~~~~~~l~~h~~~V~-sl~ 731 (837)
.|.+||+.+++.+..+... ..+..++++++++.++++. .++.|.+||+.+++....+.+|..... ...
T Consensus 94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 8999999999987777643 2458899998777766665 468999999998887776655432111 133
Q ss_pred EcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEECC---CCc-----
Q 003236 732 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK----- 801 (837)
Q Consensus 732 ~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-~I~IwDl~---s~~----- 801 (837)
+..+|..+.+.. ++.++.|. ..+..++|+|+++.|+++...+ .|+.++.. .+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~ 236 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE 236 (343)
T ss_dssp CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence 445666666555 76665552 1356799999999999988776 66666532 111
Q ss_pred ---EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 802 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 802 ---~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+...++......++++++|.++++...++.|.+||
T Consensus 237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d 275 (343)
T 2qe8_A 237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT 275 (343)
T ss_dssp HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence 012223445677899999999999888889999986
No 238
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=3.7e-08 Score=117.94 Aligned_cols=264 Identities=13% Similarity=0.080 Sum_probs=171.4
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCC----------e-EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~----------I-~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.++.|+.+|..+++.+..+...... + ..+.+ .+..|++++.|+.|+.+|..+++..-..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 446777788899999999999999777533211 0 11222 3557888889999999999998864333
Q ss_pred eeccc---cceEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeeEEecCC-----------------------
Q 003236 636 FTGHS---TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQS----------------------- 683 (837)
Q Consensus 636 ~~~h~---~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~----------------------- 683 (837)
..... ..+.+ ..+. +..+++.++ .+|.|+.+|.++|+.+..+....
T Consensus 144 ~~~~~~~~~~~~~~P~v~--~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV--KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEEE--CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 22111 11111 1111 233443332 25899999999999998876410
Q ss_pred ---------CeeEEEEecCCCEEEEEEcCC-------------------eEEEEECCCCeEEEEEcC--CC-------CC
Q 003236 684 ---------GATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQ 726 (837)
Q Consensus 684 ---------~i~sl~~sp~g~~llags~dg-------------------~I~iwDl~s~~~~~~l~~--h~-------~~ 726 (837)
....+++.++.+.++++..++ .|..+|.++++.+..+.. |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 012468888888888887665 499999999999988764 32 23
Q ss_pred EEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC------------Cc--------------------
Q 003236 727 VHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK-------------------- 770 (837)
Q Consensus 727 V~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~------------~~-------------------- 770 (837)
+....+..+|+ +|+.++ +|.++++|..+++ .+....... .+
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~ 378 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF 378 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC---EeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence 33333334665 566676 9999999999984 332111100 00
Q ss_pred ----eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEECCCCcEEEeccCCC
Q 003236 771 ----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTLTLSAHDK 810 (837)
Q Consensus 771 ----I~sv~fspdg~~L~sgs------------------------------------~dg~I~IwDl~s~~~~~l~~h~~ 810 (837)
...++++|+...+++.. .++.|..||+.+++.+-...+..
T Consensus 379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~ 458 (668)
T 1kv9_A 379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT 458 (668)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence 11267888877766532 23789999999999873323333
Q ss_pred CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 811 LVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 811 ~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+....+...+.+|++++.||.|++||
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred CCcCceeEeCCCEEEEECCcccchhhh
Confidence 444445556788999999999999986
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.03 E-value=9.6e-09 Score=118.60 Aligned_cols=234 Identities=12% Similarity=0.124 Sum_probs=168.5
Q ss_pred CCCEEEEEEC-CCcEEEEeCCCCeEEEEeccC-CCCeEEEEE-c-CCCCEEEEEe------------------CCCeEEE
Q 003236 566 DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRF-S-PSLSRLATSS------------------ADRTVRV 623 (837)
Q Consensus 566 dg~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~h-~~~I~~l~f-s-pdg~~Latgs------------------~Dg~I~I 623 (837)
||++|++... ++.|.+.|+++.++...+.-. ...+..+++ + |+++++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888887765 457999999999988855422 245889998 5 8999999885 3468999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-------------------------------------CcEE
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR 666 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-------------------------------------g~I~ 666 (837)
+|.++.+.......+- ....++++|+|+.+++++... +.|.
T Consensus 180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 9999865433333322 456788999998888776432 2488
Q ss_pred EEECCC--Cee-eeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCe------------EEEEEcCCCCCEEEE
Q 003236 667 YWSINN--GSC-AGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV 730 (837)
Q Consensus 667 vwDl~t--~~~-i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~------------~~~~l~~h~~~V~sl 730 (837)
+.|.++ ++. +..+.......++.++|||+++++++. ++.|.++|+.+.+ .+..+. -......+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 888887 555 667777778899999999999888775 6899999999653 333333 34567889
Q ss_pred EEcCCCCEEEEEe--CCeEEEEEcCCC-------CCceeEEEeecCCCceE-----EEEEeCCCCEEEEEEcCC--eE--
Q 003236 731 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFH-----SCVFHPTFPSLLVIGCYE--TL-- 792 (837)
Q Consensus 731 ~~spdg~~Lasgs--Dg~I~IwDl~s~-------~~~~~i~~~~~~~~~I~-----sv~fspdg~~L~sgs~dg--~I-- 792 (837)
+|+++| ++++.. |+.|.+||+... .....+..+..+..+-. .+.++|||++|++...-. .+
T Consensus 337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 999999 666655 999999999761 11356667766654321 124589999999987532 34
Q ss_pred ---------EEEECCCCcEE
Q 003236 793 ---------ELWNMTENKTL 803 (837)
Q Consensus 793 ---------~IwDl~s~~~~ 803 (837)
.++|+.+++..
T Consensus 416 ~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCSSCCEEEEEEECSSSSCE
T ss_pred CCCCCCCcceEEEcCCCcEE
Confidence 88999766533
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.01 E-value=4.2e-07 Score=95.23 Aligned_cols=222 Identities=7% Similarity=0.007 Sum_probs=144.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCce----eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCC
Q 003236 610 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSG 684 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~----~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~ 684 (837)
.+|+.+.. +.|+.++++..... ...+......+.+++|++++..++++...++.|.++++........+.. ...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 35555553 47888998764321 1112222346789999998888888877788999999986654433332 246
Q ss_pred eeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCce
Q 003236 685 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE 759 (837)
Q Consensus 685 i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D---g~I~IwDl~s~~~~~ 759 (837)
...++++++++.++++.. .+.|.++++........+.........++++|++..|+.+. . +.|.++++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 889999998787777765 57999999875433222332235678999999766665554 3 5788888764321 1
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK 837 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs-~DG~I~IWd 837 (837)
.+ ..........+++++++..|+++... +.|.++|+.......+.........+++. +..|+.+. ..+.|.++|
T Consensus 160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEe
Confidence 11 11223467889999998888777764 59999999866544333333445677765 44455444 456776653
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.97 E-value=1.6e-07 Score=98.87 Aligned_cols=205 Identities=11% Similarity=0.011 Sum_probs=144.1
Q ss_pred eEEEEeccCCC--CeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 588 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 588 ~~~~~l~~h~~--~I~~l~fspdg~~Latgs~--Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
+.+.++. |.. ....+.|++++.++++.+. ++.|+++|+.+++.......+.......+++. ++.++++.-.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCC
Confidence 4555663 443 4689999998644444433 58999999999875333222222233455655 566777777889
Q ss_pred cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCCE
Q 003236 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY 738 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~-----~~V~sl~~spdg~~ 738 (837)
.|.++|..+.+.+..+... .-....++++++.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++.+
T Consensus 87 ~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 9999999999999998765 22334566788888888888999999999988877766321 246788888 7755
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003236 739 LASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 800 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~ 800 (837)
++... ++.|.+.|..++ +.+..+... ......++|+|+++.+++++. .+.|++.++...
T Consensus 165 yvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 55554 789999999998 455554421 135689999999987777664 568888887543
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=2.9e-10 Score=126.24 Aligned_cols=201 Identities=9% Similarity=-0.024 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCC--Ce
Q 003236 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQS--GA 685 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~--~i 685 (837)
++..|++++.|+.|+.||..+++. +..+.. ..+.+..+..++. ++++++.|+.|+.||..+++.+..+.... .+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999998875 444443 4455555555544 55567789999999999998876654321 11
Q ss_pred e-EEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003236 686 T-QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 686 ~-sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 763 (837)
. +..+ ..++.+++++.++.|+.||.++++.+..+..+. .+.++|++..|++++ |+.|+.||.+++...-...
T Consensus 84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~- 157 (369)
T 2hz6_A 84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT- 157 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEE-
T ss_pred ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-
Confidence 1 0111 135678888889999999999999888776543 234566777888777 8999999999885322211
Q ss_pred eecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCcEEEeccCCCCeeE-EEEeCCCC
Q 003236 764 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVNG 822 (837)
Q Consensus 764 ~~~~~~~I~sv~fspdg---~~L~sgs~dg~I~IwDl~s~~~~~l~~h~~~V~s-la~spdg~ 822 (837)
... ....++..+. ..+++++.++.|+.||..+++.+-......++.. ..++.++.
T Consensus 158 ~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 158 YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred ccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 111 1222334432 5688899999999999999998733334455543 34445553
No 243
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=1.2e-07 Score=111.35 Aligned_cols=263 Identities=11% Similarity=0.109 Sum_probs=166.3
Q ss_pred CCEEEEEEC-CCcEEEEeC-CCCeEEEEeccCCC-Ce----------EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 003236 567 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-WI----------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL 633 (837)
Q Consensus 567 g~~Lasgs~-Dg~I~VWd~-~t~~~~~~l~~h~~-~I----------~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~ 633 (837)
+..|++++. ++.|+.+|. .+++.+-.+..... .+ ..+++ ++..|++++.|+.|..+|..+++...
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446666666 889999999 89998877643221 00 11222 35678888899999999999987643
Q ss_pred EEee-ccc--cceEE-EEEcCCCCeEEEEEeC-----CCcEEEEECCCCeeeeEEecCCCe-------------------
Q 003236 634 RTFT-GHS--TTVMS-LDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKCQSGA------------------- 685 (837)
Q Consensus 634 ~~~~-~h~--~~V~s-l~fspdg~~llasgs~-----Dg~I~vwDl~t~~~i~~~~~~~~i------------------- 685 (837)
..-. .+. ..+.+ .... +..+++.+.. ++.|+.+|.++++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 3222 111 01211 1111 2444443332 789999999999999887753321
Q ss_pred --------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcC--CC---
Q 003236 686 --------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQG--HK--- 724 (837)
Q Consensus 686 --------------------~sl~~sp~g~~llags~d----------------g~I~iwDl~s~~~~~~l~~--h~--- 724 (837)
..+++.++.+.++++..+ +.|..+|.++++.+..+.. |.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 235677777788777642 3699999999999888763 21
Q ss_pred -----CCEEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-------------Cce-----------
Q 003236 725 -----NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF----------- 771 (837)
Q Consensus 725 -----~~V~sl~~spdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-------------~~I----------- 771 (837)
.++. +....+|+ +++.++ +|.++++|..+++ .+..+.... .++
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 373 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH 373 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCC---EEeeecccCCccccccccccCCceecccccCCCCCC
Confidence 1221 22224674 566666 8899999999884 333322111 111
Q ss_pred ---------------EEEEEeCCCCEEEEEEc-------------------------------------CCeEEEEECCC
Q 003236 772 ---------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMTE 799 (837)
Q Consensus 772 ---------------~sv~fspdg~~L~sgs~-------------------------------------dg~I~IwDl~s 799 (837)
..++++|+...|++... ++.|+.||+.+
T Consensus 374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t 453 (571)
T 2ad6_A 374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT 453 (571)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence 24578888887777642 46899999999
Q ss_pred CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 800 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 800 ~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
++.+-...+...+....+...+.+++.++.||.|++||
T Consensus 454 G~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 454 GKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD 491 (571)
T ss_dssp CCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred CCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence 98873333333333333344567777889999999886
No 244
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.93 E-value=2.5e-06 Score=104.03 Aligned_cols=268 Identities=7% Similarity=0.015 Sum_probs=181.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
...|.++...++|.+.+ |+.+ -|.+||..++........ ....|.++...++|. |..|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 35699999998887554 4555 589999887765543221 235799999998876 5567777779999876
Q ss_pred CCCceeEEee-----ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe---------cCCCeeEEEEecC
Q 003236 628 NPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------CQSGATQMRFQPR 693 (837)
Q Consensus 628 ~~~~~~~~~~-----~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~---------~~~~i~sl~~sp~ 693 (837)
+......... -....|.++...+++. +..|+.++.|.+||..++....... ....|.++...++
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 416 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK 416 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence 5443211110 1235689999888765 3356667779999998776544321 1245888888888
Q ss_pred CCEEEEEEcCCeEEEEECCCCeEEEEEc----CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee----
Q 003236 694 LGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS---- 765 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s~~~~~~l~----~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~---- 765 (837)
+..|.+|+.++.|.+||..+++...... .....|.++..+++|.+.+++. +.|.+||..++ .......
T Consensus 417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~~~~~~~~~~~ 492 (795)
T 4a2l_A 417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---SFTTIEKEKDG 492 (795)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---EEEECCBCTTC
T ss_pred CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---eEEEccccccc
Confidence 7757788888889999998876443322 1345799999999998777665 55889998765 2221111
Q ss_pred --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEec-------cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 766 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 766 --~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~-------~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.....|.++...+++. |.+++. +.|.+||..+++. .+. .....|.++...++|.+.++.. +| |..|
T Consensus 493 ~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~ 567 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCF 567 (795)
T ss_dssp CBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEE
T ss_pred cccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeE
Confidence 1236788999998887 555555 5688999877765 332 2345789999988888666543 34 4444
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.91 E-value=2.1e-06 Score=104.61 Aligned_cols=266 Identities=8% Similarity=0.087 Sum_probs=177.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~-------h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~ 627 (837)
...|.++...++|.+.+ |+.++-|.+||..+++....... ....|.++...++|.+. .|+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCC
Confidence 46799999888886554 55554599999887665543322 23569999998887754 45555 48899987
Q ss_pred CCCceeEEee--------ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-------cCCCeeEEEEec
Q 003236 628 NPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGATQMRFQP 692 (837)
Q Consensus 628 ~~~~~~~~~~--------~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-------~~~~i~sl~~sp 692 (837)
+... ..+. -....|.++...++|. +..|+.++.|.+|+..+........ ....|.++...+
T Consensus 291 ~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~ 366 (795)
T 4a2l_A 291 TDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK 366 (795)
T ss_dssp TTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred CCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence 6542 2221 1235799999998876 3356667779999876554322211 123578888877
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEcC--------CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEE
Q 003236 693 RLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE 763 (837)
Q Consensus 693 ~g~~llags~dg~I~iwDl~s~~~~~~l~~--------h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~ 763 (837)
++. |.+|+.++.|..||..++........ ....|.+++.++++.+|.+|+ ++.|.+||..++. . ..
T Consensus 367 ~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~---~-~~ 441 (795)
T 4a2l_A 367 DKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ---V-EN 441 (795)
T ss_dssp TSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC---E-EE
T ss_pred CCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc---E-EE
Confidence 654 66788888899999887654432211 235799999999999444455 6789999988762 2 22
Q ss_pred ee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc-------CCCCeeEEEEeCCCCEEEEEECCC
Q 003236 764 LS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 764 ~~-----~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~-------h~~~V~sla~spdg~~LaSgs~DG 831 (837)
+. .....|.++...+++. |.+++. +.|.+||..+++...+.. ....|.++...++|.+.+... +|
T Consensus 442 ~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G 518 (795)
T 4a2l_A 442 FNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG 518 (795)
T ss_dssp ECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC
T ss_pred eecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc
Confidence 22 2345788999888887 555555 569999998877654432 236789999998888766554 44
Q ss_pred cEEEe
Q 003236 832 CVKIW 836 (837)
Q Consensus 832 ~I~IW 836 (837)
|.+|
T Consensus 519 -l~~~ 522 (795)
T 4a2l_A 519 -LSVF 522 (795)
T ss_dssp -EEEE
T ss_pred -eEEE
Confidence 5554
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.89 E-value=9e-07 Score=95.48 Aligned_cols=234 Identities=10% Similarity=0.029 Sum_probs=147.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-c------------------CCCCeEEEEEcCCCCEEEEEe
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E------------------HTQWITDVRFSPSLSRLATSS 616 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-~------------------h~~~I~~l~fspdg~~Latgs 616 (837)
....+++|+++|++++++..++.|..|+..++....... . ....+..+++.++...|+++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345678999999878888889999999987654432110 0 113578999997334566665
Q ss_pred CCCeEEEEEcCCCCceeEEeec-----cccceEEEEEcC-CCCeEEEEEeC-----------------CCcEEEEECCCC
Q 003236 617 ADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNG 673 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~~~~~~~~~-----h~~~V~sl~fsp-dg~~llasgs~-----------------Dg~I~vwDl~t~ 673 (837)
..+.|.++|..++.. ..+.. .......+++.+ +|. ++++... ++.|..||..++
T Consensus 99 ~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp TTTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred CCCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 556688888775432 22211 113468899999 876 4444321 367999998877
Q ss_pred eeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCC---eEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-----
Q 003236 674 SCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD----- 744 (837)
Q Consensus 674 ~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~---~~~~~l~~h~~~V~sl~~spdg~~LasgsD----- 744 (837)
+.............++++++++.++++.. .+.|.+|++... ... .+....+ ...++++++|.++++...
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 65544443355678999999997777754 589999998742 211 1111223 788999999987776543
Q ss_pred ------CeEEEEEcCCCCCceeEEEeecCC----CceEEEEEeCCCCEEEEEE-cCCeEEEEECCCC
Q 003236 745 ------ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTEN 800 (837)
Q Consensus 745 ------g~I~IwDl~s~~~~~~i~~~~~~~----~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s~ 800 (837)
+.|.++|.. + +.+..+.... ..+..+++. ++ .|++++ .++.|.++++...
T Consensus 254 ~~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 254 MHGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC---
T ss_pred ccCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEecccc
Confidence 457777753 3 3444444322 345666663 44 455554 5668888887644
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.89 E-value=3.3e-07 Score=107.80 Aligned_cols=265 Identities=9% Similarity=0.036 Sum_probs=166.0
Q ss_pred CCEEEEEEC-CCcEEEEeC-CCCeEEEEeccCCCC-----------eEEEEEcCCCCE----EEEEeCCCeEEEEEcCCC
Q 003236 567 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP 629 (837)
Q Consensus 567 g~~Lasgs~-Dg~I~VWd~-~t~~~~~~l~~h~~~-----------I~~l~fspdg~~----Latgs~Dg~I~IWDl~~~ 629 (837)
+..|++++. ++.|+.+|. .+++.+-.+...... ...+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446666776 889999999 899998776532211 123455443444 888889999999999998
Q ss_pred CceeEEeecc-c--cceEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeeEEecCCCe---------------
Q 003236 630 DYSLRTFTGH-S--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKCQSGA--------------- 685 (837)
Q Consensus 630 ~~~~~~~~~h-~--~~V~s-l~fspdg~~llasgs-----~Dg~I~vwDl~t~~~i~~~~~~~~i--------------- 685 (837)
+...+.-... . ..+.+ ..+. + ..+++.++ .++.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 8643322211 0 01211 1111 2 33443332 3789999999999999888754322
Q ss_pred ------------------------eEEEEecCCCEEEEEEcC----------------CeEEEEECCCCeEEEEEcCCCC
Q 003236 686 ------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHKN 725 (837)
Q Consensus 686 ------------------------~sl~~sp~g~~llags~d----------------g~I~iwDl~s~~~~~~l~~h~~ 725 (837)
..+.+.+..+.++++..+ +.|..+|.++++.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 135677788888888765 3899999999999888764221
Q ss_pred ----------CEEEEEEc-CCC---CEEEEEe-CCeEEEEEcCCCCCceeEEEeecC-------------CCc-------
Q 003236 726 ----------QVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNK------- 770 (837)
Q Consensus 726 ----------~V~sl~~s-pdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~-------------~~~------- 770 (837)
++. +... .+| ..++.++ +|.|+++|..+++ .+...... ..+
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 375 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEYG 375 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCC---EeecccccCCcccccccccCCCceeeccccC
Confidence 121 2222 467 4566666 9999999999884 33332211 111
Q ss_pred -------------------eEEEEEeCCCCEEEEEE---------------------------------------cCCeE
Q 003236 771 -------------------FHSCVFHPTFPSLLVIG---------------------------------------CYETL 792 (837)
Q Consensus 771 -------------------I~sv~fspdg~~L~sgs---------------------------------------~dg~I 792 (837)
-..++++|+...+++.. .++.|
T Consensus 376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l 455 (599)
T 1w6s_A 376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI 455 (599)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence 12456777766655532 23689
Q ss_pred EEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 793 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 793 ~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
..||+.+++.+-...+..++..-.+...+.+|+.++.||.|+.||
T Consensus 456 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 456 KAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp EEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred EEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence 999999998872222222222212233567788889999999876
No 248
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.85 E-value=2.1e-06 Score=92.09 Aligned_cols=233 Identities=9% Similarity=0.016 Sum_probs=145.5
Q ss_pred CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe-CCC-c
Q 003236 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNS-E 664 (837)
Q Consensus 587 ~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs-~Dg-~ 664 (837)
.+.+..+... .....++|+++++++++-..++.|..||..... ...+ .....+.++++.+++. ++++.. .++ .
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~~ 96 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHA-TVEGKVSGLAFTSNGD-LVATGWNADSIP 96 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEE-ECSSEEEEEEECTTSC-EEEEEECTTSCE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEE-eCCCCceeEEEcCCCc-EEEEeccCCcce
Confidence 4455555432 567899999999877776678999999987532 2222 2345688999999987 444433 222 4
Q ss_pred EEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeE-EEEEc---------CCCCCEEEEE
Q 003236 665 IRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSVC 731 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~--~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~-~~~l~---------~h~~~V~sl~ 731 (837)
|..+|..+++........ .....++..+ +..++++. .++.|+++|...+.. +.... ..-.....|
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 777888887765444332 2234445444 34555555 478999999876532 22111 111234556
Q ss_pred EcCCCCEEEEEe--CCeEEEEEcCC-CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE---e
Q 003236 732 WNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---L 805 (837)
Q Consensus 732 ~spdg~~Lasgs--Dg~I~IwDl~s-~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~---l 805 (837)
++++.+|+++. .+.|.+|++.. +.. .....+.. ......++++++|..+++....+.|.+||.. ++... +
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 78888777766 77999999875 221 11111111 1345678999999865555557799999975 55532 2
Q ss_pred ccCCCCeeEEEEe---CCCCEEEEEECC
Q 003236 806 SAHDKLVSSLAAS---TVNGMVASASHD 830 (837)
Q Consensus 806 ~~h~~~V~sla~s---pdg~~LaSgs~D 830 (837)
......+++++|. ++++.|+.++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ccccCCceEEEEecccCCCCEEEEECCC
Confidence 2233568999998 888777766543
No 249
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.84 E-value=1.3e-06 Score=94.11 Aligned_cols=232 Identities=9% Similarity=0.005 Sum_probs=145.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec--------------------cccceEEEEEcCCCCeEEE
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------------------HSTTVMSLDFHPSKEDLLC 657 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~--------------------h~~~V~sl~fspdg~~lla 657 (837)
....+++|++++++++++..++.|..||..+... ..+.. ....+.++++.+++..+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 3467888999998888888999999999876543 22210 1135788999973344554
Q ss_pred EEeCCCcEEEEECCCCeeeeEEec-----CCCeeEEEEec-CCCEEEEEEc-----------------CCeEEEEECCCC
Q 003236 658 SCDNNSEIRYWSINNGSCAGVFKC-----QSGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQ 714 (837)
Q Consensus 658 sgs~Dg~I~vwDl~t~~~i~~~~~-----~~~i~sl~~sp-~g~~llags~-----------------dg~I~iwDl~s~ 714 (837)
+ ...+.|..+|..++........ ......+++.+ ++..+++... ++.|..||..++
T Consensus 97 ~-d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 V-DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp E-ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred E-ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 4 3345588888876543222111 13467899999 7765554322 367999998877
Q ss_pred eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc----
Q 003236 715 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---- 788 (837)
Q Consensus 715 ~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~---- 788 (837)
+....... ......|+|++++++|+++. .+.|.+|++....... ...+..... ...++++++|..+++...
T Consensus 176 ~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 176 ETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence 54332221 23456799999999776664 6799999987532111 111111223 788999999985555444
Q ss_pred ------CCeEEEEECCCCcEE-EeccC----CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 789 ------YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 789 ------dg~I~IwDl~s~~~~-~l~~h----~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.+.|..+|.. ++.+ .+... ...++++++ .++.++++....+.|.+++
T Consensus 253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 4678889875 5554 33322 245777777 3566666655677777653
No 250
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=5.5e-06 Score=100.72 Aligned_cols=274 Identities=8% Similarity=-0.060 Sum_probs=176.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec--------------cCCCCeEEEEEcCCCCEEEEEeCCCe
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT 620 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~--------------~h~~~I~~l~fspdg~~Latgs~Dg~ 620 (837)
...|.++...++|. |..|+..+-|.++|..+........ .....|.++....+|. |..|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45699999988885 5556665678899987655432211 1345799999988876 666777777
Q ss_pred EEEEEcCCCCceeEEe--------eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe----cCCCeeEE
Q 003236 621 VRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----CQSGATQM 688 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~--------~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----~~~~i~sl 688 (837)
|..|+..+........ .-....|.++...+++. + ..|+.++.|.+||..++....... ....|.++
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-L-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-E-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-E-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 8999887654322111 01235689999888765 3 345556679999987654332211 12457778
Q ss_pred EEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-
Q 003236 689 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS- 765 (837)
Q Consensus 689 ~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~--~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~- 765 (837)
...+++. |.+|+.++.|..||..+++...... .....|.++..++++.+.+++. +.|.+||..++.. ..+....
T Consensus 413 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN 489 (781)
T ss_dssp EECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred EECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence 7776654 6667777889999988775443221 1346799999988887666554 6699999876532 1111111
Q ss_pred --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc----CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 766 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 766 --~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~----h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.....|.++...++|. |.+++.++-|..||..+++...+.. ....|.++...++|.+.++. .+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence 1136788999998887 5666665568889988877665432 23568899988888866654 466546654
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.80 E-value=8.7e-07 Score=93.17 Aligned_cols=186 Identities=10% Similarity=0.018 Sum_probs=128.3
Q ss_pred ceEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEE
Q 003236 642 TVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL 718 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~ 718 (837)
....+.|++++ .++++.+. ++.|.++|+.+++.+..+..........+..+++.++.+.. ++.+.++|..+.+.+.
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEE
Confidence 46799999985 56655543 57999999999999998876554443334444667777765 6899999999999988
Q ss_pred EEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--C---CceEEEEEeCCCCEEEEEE-cCCe
Q 003236 719 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVIG-CYET 791 (837)
Q Consensus 719 ~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~---~~I~sv~fspdg~~L~sgs-~dg~ 791 (837)
++...... ...+++|+..|+++. ++.|.++|..+.. .+..+... . ..+..+.|. ++ .+++.. .++.
T Consensus 101 ~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~---v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~ 173 (266)
T 2iwa_A 101 NFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFK---LIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDC 173 (266)
T ss_dssp EEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSE
T ss_pred EEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCc---EEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCe
Confidence 88633111 233556777777666 7899999998873 44443321 1 235677888 66 455555 4679
Q ss_pred EEEEECCCCcEEEeccC--------------CCCeeEEEEeCCCCEEE-EEECCCcEEE
Q 003236 792 LELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVA-SASHDKCVKI 835 (837)
Q Consensus 792 I~IwDl~s~~~~~l~~h--------------~~~V~sla~spdg~~La-Sgs~DG~I~I 835 (837)
|.+.|..+++++....- ....+.|+|+|+++.|+ ++...+.|.+
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 99999999998732211 13568999999987554 5545666654
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=7.3e-07 Score=106.62 Aligned_cols=255 Identities=13% Similarity=0.137 Sum_probs=160.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEeC------CCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.|+.|+.+|.++++.+..+.... ..+.+ ..+. ++ .+++++. +|.|+.||..+++..-..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4578888899999999999999987765321 11111 1111 33 5555543 589999999998753332
Q ss_pred eec--c----------------------------ccceEEEEEcCCCCeEEEEEeCCC-------------------cEE
Q 003236 636 FTG--H----------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR 666 (837)
Q Consensus 636 ~~~--h----------------------------~~~V~sl~fspdg~~llasgs~Dg-------------------~I~ 666 (837)
... . ......++++++.+ +++.+..++ .|.
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 211 0 01112467888766 444555454 499
Q ss_pred EEECCCCeeeeEEecC----------CCeeEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCCC--------
Q 003236 667 YWSINNGSCAGVFKCQ----------SGATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHKN-------- 725 (837)
Q Consensus 667 vwDl~t~~~i~~~~~~----------~~i~sl~~sp~g~---~llags~dg~I~iwDl~s~~~~~~l~~h~~-------- 725 (837)
.+|.++++.+..+... .......+..+++ .+++++.+|.++++|.++++.+..+.....
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 9999999999888752 1222333334554 588888999999999999988754432210
Q ss_pred ----CE------------------------EEEEEcCCCCEEEEE-----------------------------------
Q 003236 726 ----QV------------------------HSVCWNTSGEYLASV----------------------------------- 742 (837)
Q Consensus 726 ----~V------------------------~sl~~spdg~~Lasg----------------------------------- 742 (837)
++ ..++++|+..++++.
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 00 125777776665541
Q ss_pred -e-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCe-eEEEEe
Q 003236 743 -S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV-SSLAAS 818 (837)
Q Consensus 743 -s-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V-~sla~s 818 (837)
. ++.|..||+.++ +.+...... .......+...+..+++++.|+.|++||.++++.+ .+....... .-+.+.
T Consensus 434 ~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~ 509 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE 509 (668)
T ss_dssp GGCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred CCccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEE
Confidence 1 377999999988 555444432 23333445557788999999999999999999988 333322111 233445
Q ss_pred CCCC-EEEEEE
Q 003236 819 TVNG-MVASAS 828 (837)
Q Consensus 819 pdg~-~LaSgs 828 (837)
.+|+ +++.++
T Consensus 510 ~~G~~yva~~~ 520 (668)
T 1kv9_A 510 LAGRQYVAIMA 520 (668)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 5676 454444
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.78 E-value=7.8e-07 Score=92.74 Aligned_cols=192 Identities=12% Similarity=0.130 Sum_probs=134.7
Q ss_pred eEEEEeccCCC--CeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC
Q 003236 588 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663 (837)
Q Consensus 588 ~~~~~l~~h~~--~I~~l~fspdg~~Latgs~Dg--~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg 663 (837)
+.+.++. |.. ....+.|+ ++.++.+.+.+| .|+++|+.+++. +..+.- ..........++++.+++..-.++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIEL-GKRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEEC-CTTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEec-CCccceeEEEEeCCEEEEEEeeCC
Confidence 3455553 443 35788898 666666666665 899999999875 333332 223333223334567777777799
Q ss_pred cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCCE
Q 003236 664 EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEY 738 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~-----~~V~sl~~spdg~~ 738 (837)
.+.+||..+.+.+..+.....- ..++++++.|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|++
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 9999999999999999875433 3444677888888778899999999988877765421 345567776 7766
Q ss_pred EEEEe-CCeEEEEEcCCCCCceeEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 003236 739 LASVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------~~~I~sv~fspdg~~L~sgs~d 789 (837)
++... ++.|.+.|..++ +.+..+... ....+.++|+|+++.|++.+..
T Consensus 185 yan~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 65555 789999999998 455444331 2456899999999888888764
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=1.2e-05 Score=86.21 Aligned_cols=237 Identities=9% Similarity=0.022 Sum_probs=146.2
Q ss_pred eeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-C-eEE
Q 003236 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TVR 622 (837)
Q Consensus 545 ~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-g-~I~ 622 (837)
.+.+..+..+ .....++|+++|+++++-..++.|..||.+.. ....+. ....+..+++.++++++++.... + .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3445555443 45789999999997777667899999997753 333332 33568999999999866555432 2 466
Q ss_pred EEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eeEEe-------c---CCCeeEEEEe
Q 003236 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK-------C---QSGATQMRFQ 691 (837)
Q Consensus 623 IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~-i~~~~-------~---~~~i~sl~~s 691 (837)
.+|..+++...............++..++ ..++++...++.|+++|...++. +.... . -.....+ +
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 77776655321111112223345555444 44555555688999999876532 11110 0 1123444 8
Q ss_pred cCCCEEEEEEc-CCeEEEEECCC-CeE--EEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec
Q 003236 692 PRLGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 766 (837)
Q Consensus 692 p~g~~llags~-dg~I~iwDl~s-~~~--~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~ 766 (837)
++++.++++.. .+.|.+||+.. +.. ...+.. ......++++++|+++++.. .+.|.+||.. +.. ..+..+..
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~-~~~~~~~~ 252 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST-TIIAQAEQ 252 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE-EEEECGGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE-EEEeeccc
Confidence 88888877765 57999999874 321 111111 13456789999998766665 7789999865 311 11223333
Q ss_pred CCCceEEEEEe---CCCCEEEEEEcCC
Q 003236 767 TGNKFHSCVFH---PTFPSLLVIGCYE 790 (837)
Q Consensus 767 ~~~~I~sv~fs---pdg~~L~sgs~dg 790 (837)
.....++++|. +++..|++++..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 34668999998 8988888877654
No 255
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.75 E-value=3.6e-05 Score=83.05 Aligned_cols=229 Identities=8% Similarity=-0.035 Sum_probs=148.2
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCC---CceeEEeeccccceE
Q 003236 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM 644 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~---~~~~~~~~~h~~~V~ 644 (837)
+|+.+. ...|+..|+.+.+....+. ....+..++|++.+..|+.+ ..++.|..+++... ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 444444 3568999988876655554 34567899999876555555 45689999998751 211222222234568
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEEc
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ 721 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~d--g~I~iwDl~s~~~~~~l~ 721 (837)
.+++++.+..++++-...+.|.++|+........+. .......+++.|.++.++.+... +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 899988777777777778899999998554433333 23567899999988888777754 689999886543332233
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECC
Q 003236 722 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT 798 (837)
Q Consensus 722 ~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~ 798 (837)
..-.....|+|++++..|+.+. .+.|..+|+..... ..+............+++.. ..|+++. ..+.|..+|..
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~~--~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETT
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEEC--CEEEEEECCCCeEEEEeCC
Confidence 3345788999999887777766 66999999975322 22222212233456777753 4555555 45689999976
Q ss_pred CCcE
Q 003236 799 ENKT 802 (837)
Q Consensus 799 s~~~ 802 (837)
+++.
T Consensus 238 ~g~~ 241 (316)
T 1ijq_A 238 TGSD 241 (316)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6653
No 256
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.74 E-value=1.7e-07 Score=111.86 Aligned_cols=266 Identities=9% Similarity=0.047 Sum_probs=154.3
Q ss_pred EEEEcC-CCCEEEEEECCC-----------cEEEEeCCCCeEE--EEe-ccCCCCeEEEEEcCCCCEEEEEeC-CCeEEE
Q 003236 560 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSA-DRTVRV 623 (837)
Q Consensus 560 sl~fSp-dg~~Lasgs~Dg-----------~I~VWd~~t~~~~--~~l-~~h~~~I~~l~fspdg~~Latgs~-Dg~I~I 623 (837)
++++.+ ++++++.|+.+. .+.+||..+.+.. ..+ ..+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888999887643 5889998875432 222 223344556788889999999984 568999
Q ss_pred EEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEe-CC-----CcEEEEECCCCeeeeEE-----ecCCCeeEEEEec
Q 003236 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----KCQSGATQMRFQP 692 (837)
Q Consensus 624 WDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs-~D-----g~I~vwDl~t~~~i~~~-----~~~~~i~sl~~sp 692 (837)
||..+.......-......-.++++.+++. +++.|+ .+ ..+.+||..+.+....- .....-....+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 999876532111111112223455666766 555666 34 57999999887644321 0000000011223
Q ss_pred CCCEEEEEEcC---------CeEEEEECCCCeEEEEEcCCC---------CCEEEEEEcC-CCCEEEEEe-CC-------
Q 003236 693 RLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWNT-SGEYLASVS-DE------- 745 (837)
Q Consensus 693 ~g~~llags~d---------g~I~iwDl~s~~~~~~l~~h~---------~~V~sl~~sp-dg~~Lasgs-Dg------- 745 (837)
++..++.++.+ ..+..||..+.........+. ..-.++.|.. +++++++|+ ++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 34444555443 457888988765333222111 1234455543 677777765 32
Q ss_pred ----eEEEEEcCCCCCceeEEEe--ecC-CCceEEEEEeCCCCEEEEEEcC-----------CeEEEEECCCCcEEEecc
Q 003236 746 ----LVRVWSIGSGSKGECIHEL--SCT-GNKFHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTLSA 807 (837)
Q Consensus 746 ----~I~IwDl~s~~~~~~i~~~--~~~-~~~I~sv~fspdg~~L~sgs~d-----------g~I~IwDl~s~~~~~l~~ 807 (837)
.|.+||..+.. ..... ... .....++++.|+++.+++|+.+ ..+.+||..+.+...+..
T Consensus 429 ~~~~~v~~yd~~~~~---W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 505 (656)
T 1k3i_A 429 TNAHIITLGEPGTSP---NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP 505 (656)
T ss_dssp CCEEEEECCSTTSCC---EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred CcceEEEcCCCCCCC---eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCC
Confidence 57778776652 22211 111 2223455777899988888864 468999998877654322
Q ss_pred ---CCCCeeEEEEeCCCCEEEEEEC
Q 003236 808 ---HDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 808 ---h~~~V~sla~spdg~~LaSgs~ 829 (837)
......+..+.+++++++.|+.
T Consensus 506 ~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 506 NSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCccccccHhhcCCCcEEEecCCC
Confidence 1222334556789999999985
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.73 E-value=1.8e-06 Score=101.29 Aligned_cols=255 Identities=9% Similarity=0.017 Sum_probs=155.4
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEeC------CCeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs~------Dg~I~IWDl~~~~~~~~~ 635 (837)
+..|++++.|+.|..+|..+++.+..+.... ..+.+ .... ++ .+++++. ++.|+.+|..+++..-+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888889999999999999887654221 01211 1111 33 5555554 799999999998753332
Q ss_pred eecccc-------------------------------------ceEEEEEcCCCCeEEEEEeC-----------C----C
Q 003236 636 FTGHST-------------------------------------TVMSLDFHPSKEDLLCSCDN-----------N----S 663 (837)
Q Consensus 636 ~~~h~~-------------------------------------~V~sl~fspdg~~llasgs~-----------D----g 663 (837)
...... ....+++.++...+++..+. | +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 221100 00235666665545443321 1 3
Q ss_pred cEEEEECCCCeeeeEEecCC-------Ce---eEEEEecCCC---EEEEEEcCCeEEEEECCCCeEEEEEcCCC------
Q 003236 664 EIRYWSINNGSCAGVFKCQS-------GA---TQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK------ 724 (837)
Q Consensus 664 ~I~vwDl~t~~~i~~~~~~~-------~i---~sl~~sp~g~---~llags~dg~I~iwDl~s~~~~~~l~~h~------ 724 (837)
.|..+|.++++.+..+.... .+ .-+....+++ .+++++.+|.++++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 69999999999998887421 11 1122224563 46677788999999999998887764321
Q ss_pred -------CCE--------------------------EEEEEcCCCCEEEEEe----------------------------
Q 003236 725 -------NQV--------------------------HSVCWNTSGEYLASVS---------------------------- 743 (837)
Q Consensus 725 -------~~V--------------------------~sl~~spdg~~Lasgs---------------------------- 743 (837)
.++ ..++++|+..+|++..
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2357788777766643
Q ss_pred ----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCC-C
Q 003236 744 ----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK-L 811 (837)
Q Consensus 744 ----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~-~ 811 (837)
++.|..||+.++ +.+..+... ..+....+...+..+++++.|+.|+.||.++++.+ .+..... .
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 367888998887 444444322 22222333445667888999999999999999988 3332211 1
Q ss_pred eeEEEEeCCCCEEEEE
Q 003236 812 VSSLAASTVNGMVASA 827 (837)
Q Consensus 812 V~sla~spdg~~LaSg 827 (837)
-.-+.+..+|+.++.+
T Consensus 509 ~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 509 GSPMTYSFKGKQYIGS 524 (571)
T ss_dssp SCCEEEEETTEEEEEE
T ss_pred eeeEEEEECCEEEEEE
Confidence 1223455677654433
No 258
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.73 E-value=1.9e-05 Score=86.64 Aligned_cols=238 Identities=9% Similarity=0.007 Sum_probs=154.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCcee
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSL 633 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~~~~~ 633 (837)
.+..+|.+..+++ +|+.+. ...|+..++........+.. ...+..++|++....|+.+ ...+.|+.+++..... .
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~ 108 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-E 108 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-e
Confidence 3445666666644 454443 35688888877655555543 3458899999866665555 4578899999886543 2
Q ss_pred EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEE
Q 003236 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILD 710 (837)
Q Consensus 634 ~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d--g~I~iwD 710 (837)
............+++.+.+..++++-...+.|.++++........+.. ......+++.|.++.++.+... +.|..++
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~ 188 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 188 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEe
Confidence 222223345678999987777887777788999999875443333322 3457899999988887777653 6899998
Q ss_pred CCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003236 711 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 788 (837)
Q Consensus 711 l~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~ 788 (837)
+........+...-.....|+|++++..|+.+. .+.|..+|+..... ...+.........+++. + ..|+.+..
T Consensus 189 ~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---~~~~~~~~~~P~giav~-~-~~ly~td~ 263 (349)
T 3v64_C 189 MDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---KAVISQGLPHPFAITVF-E-DSLYWTDW 263 (349)
T ss_dssp TTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---EEEECSSCSSEEEEEEE-T-TEEEEEET
T ss_pred CCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce---EEEEeCCCCCceEEEEE-C-CEEEEecC
Confidence 875433322223345678999999877777766 67899999875421 11222234456777773 3 35555554
Q ss_pred -CCeEEEEECCCCc
Q 003236 789 -YETLELWNMTENK 801 (837)
Q Consensus 789 -dg~I~IwDl~s~~ 801 (837)
.+.|..+|..+++
T Consensus 264 ~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 264 HTKSINSANKFTGK 277 (349)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCeEEEEEccCCC
Confidence 5688888865554
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.72 E-value=1.6e-06 Score=90.41 Aligned_cols=179 Identities=8% Similarity=0.026 Sum_probs=126.8
Q ss_pred cceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCR 717 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~ 717 (837)
.....|.|+ + ..++.+++.+| .|+++|+.+++.+..+..........+.++++.|+.... ++.+.+||..+.+.+
T Consensus 43 ~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 43 AFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp CEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred cccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence 345788998 5 46777777766 899999999999999988776655545555677777765 789999999999999
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--C---CceEEEEEeCCCCEEEEEE-cCC
Q 003236 718 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVIG-CYE 790 (837)
Q Consensus 718 ~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~---~~I~sv~fspdg~~L~sgs-~dg 790 (837)
.++..... -..++ +|+..|+.+. ++.|.++|..+.. .+..+... + ..++.+.|. +|. |++.. .++
T Consensus 121 ~ti~~~~e-G~glt--~dg~~L~~SdGs~~i~~iDp~T~~---v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~ 192 (262)
T 3nol_A 121 RSFNYDGE-GWGLT--HNDQYLIMSDGTPVLRFLDPESLT---PVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTN 192 (262)
T ss_dssp EEEECSSC-CCCEE--ECSSCEEECCSSSEEEEECTTTCS---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSS
T ss_pred EEEECCCC-ceEEe--cCCCEEEEECCCCeEEEEcCCCCe---EEEEEEeccCCccccccceeEEE-CCE-EEEEEccCC
Confidence 88874322 12333 5677666655 7789999998874 44443321 2 334556776 664 55555 467
Q ss_pred eEEEEECCCCcEEEeccC-------------CCCeeEEEEeCCCCEEEEEEC
Q 003236 791 TLELWNMTENKTLTLSAH-------------DKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 791 ~I~IwDl~s~~~~~l~~h-------------~~~V~sla~spdg~~LaSgs~ 829 (837)
.|.+.|..+++++....- ....+.|||+|+++.|+..+.
T Consensus 193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999999998732211 235789999999887776664
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.72 E-value=6.2e-06 Score=96.90 Aligned_cols=263 Identities=10% Similarity=0.028 Sum_probs=160.4
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccCCCCe---------EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeec
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I---------~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
..|++++.++.|+.+|..+++.+-.+....... ..+++ .+..|++++.|+.|..+|..+++.....-..
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 355555654459999999999987765332210 11222 3557888889999999999998864332221
Q ss_pred c-c--cceE-E-EEEcC--CCCeEEEEEe------CCCcEEEEECCCCeeeeEEecCCC---------------------
Q 003236 639 H-S--TTVM-S-LDFHP--SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSG--------------------- 684 (837)
Q Consensus 639 h-~--~~V~-s-l~fsp--dg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~~--------------------- 684 (837)
. . ..+. . +.... ++..+++.+. .++.|+.+|.++|+.+........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 1 1 0111 1 11111 1222444543 378999999999998886653210
Q ss_pred ---------------------eeEEEEecCCCEEEEEEc--------------------C----CeEEEEECCCCeEEEE
Q 003236 685 ---------------------ATQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRLK 719 (837)
Q Consensus 685 ---------------------i~sl~~sp~g~~llags~--------------------d----g~I~iwDl~s~~~~~~ 719 (837)
-..+++.++.+.++++.. | +.|..+|.++++.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 013566777788887774 2 5899999999999988
Q ss_pred EcC--CC--------CCEEEEEEc-CCCC---EEEEEe-CCeEEEEEcCCCCCceeEEEeecCC-------------Cc-
Q 003236 720 LQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NK- 770 (837)
Q Consensus 720 l~~--h~--------~~V~sl~~s-pdg~---~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~-------------~~- 770 (837)
+.. |. .++. +... .+|+ +++.++ +|.|+++|..+++ .+..+.... .+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~lw~~~~~~~~~~~~~~~~~~g~p~ 382 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCEE
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC---EecccccccCccccccccccCCCEe
Confidence 753 32 1221 2222 4674 677777 9999999999884 333322211 00
Q ss_pred -------------------------------eEEEEEeCCCCEEEEEE--------------------------------
Q 003236 771 -------------------------------FHSCVFHPTFPSLLVIG-------------------------------- 787 (837)
Q Consensus 771 -------------------------------I~sv~fspdg~~L~sgs-------------------------------- 787 (837)
...++++|+...+++..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~ 462 (582)
T 1flg_A 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence 01346677666665543
Q ss_pred -cCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 788 -CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 788 -~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.++.|..||+.+++.+ ... +..++..-.....+.+++.++.||.|+.||
T Consensus 463 ~~~G~l~A~D~~tG~~~W~~~-~~~~~~~g~~~tagglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 463 DHVGSLRAMDPVSGKVVWEHK-EHLPLWAGVLATAGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEE-ESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred CCcceEEEEECCCCCEEEEec-CCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence 2578999999999987 332 222332222223467888899999999886
No 261
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=1.5e-05 Score=96.89 Aligned_cols=269 Identities=8% Similarity=0.026 Sum_probs=173.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~-------~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~ 628 (837)
..|.++...++|.+.+ |+.+ -|.+||..+.+...... .....|.++...+++. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 5699999998887655 4444 68999987765543221 1245699999888775 55566645688899876
Q ss_pred CCceeEEe-------------eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe----------cCCCe
Q 003236 629 PDYSLRTF-------------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------CQSGA 685 (837)
Q Consensus 629 ~~~~~~~~-------------~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~----------~~~~i 685 (837)
........ .-....|.++....++. +..|..++-|..|+..+........ ....|
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence 54311111 11345789999988875 3456667779999987655433211 12457
Q ss_pred eEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEE
Q 003236 686 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH 762 (837)
Q Consensus 686 ~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l---~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~ 762 (837)
.++...+++ .|.+|+.++.|.+||..++...... ......|.+++.++++.+.+...++.|.+||..++ . +.
T Consensus 366 ~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~---~-~~ 440 (781)
T 3v9f_A 366 SSVCDDGQG-KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLK---K-FQ 440 (781)
T ss_dssp EEEEECTTS-CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSC---E-EE
T ss_pred EEEEEcCCC-CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCC---c-EE
Confidence 888877765 4667777778999998765432211 12346799999988888777554677999988765 2 22
Q ss_pred Eee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEecc-C-----CCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 763 ELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-H-----DKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 763 ~~~---~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~~-h-----~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
.+. .....|.++...+++. |.+++. +.|.+||..+++...+.. . ...|.++...++|.+.+....+| |
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l 517 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V 517 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E
T ss_pred EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E
Confidence 222 2346788888888776 666666 669999988876553322 1 36799999998888766543345 4
Q ss_pred EEeC
Q 003236 834 KIWK 837 (837)
Q Consensus 834 ~IWd 837 (837)
..||
T Consensus 518 ~~~~ 521 (781)
T 3v9f_A 518 GIYT 521 (781)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 4443
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.69 E-value=2.5e-06 Score=88.93 Aligned_cols=191 Identities=9% Similarity=0.046 Sum_probs=134.9
Q ss_pred eEEEEeccCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 588 ~~~~~l~~h~--~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
+.+.++. |. .....+.|+ ++.++++.+.+|.|+++|+.+++..... ......-..+++. ++.+++..-.++.+
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEE
Confidence 3444552 43 345688887 4566677778889999999998864444 3222222335554 56677777789999
Q ss_pred EEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCCEEE
Q 003236 666 RYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYLA 740 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~-----~~V~sl~~spdg~~La 740 (837)
.+||..+.+.+..+.....-..++ ++++.|+++..++.|.++|..+.+.+..+.... ..++.+.|. +|++++
T Consensus 119 ~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 999999999999998755433444 567888888889999999999998887775422 245677877 776665
Q ss_pred EEe-CCeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003236 741 SVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~sv~fspdg~~L~sgs~d 789 (837)
... ++.|.+.|..++ +.+..+.. .....+.|+|+|+++.|++.+..
T Consensus 196 nvw~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 196 NIWHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp EETTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred EECCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 554 789999999998 44444332 12467899999988877777653
No 263
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.64 E-value=2.1e-05 Score=87.42 Aligned_cols=237 Identities=9% Similarity=-0.011 Sum_probs=154.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeEEe
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.+|.+..+++ +|+.+. ...|+.+++........+.. ...+..++|++.+..|+.+ ...+.|+.+++..... ...+
T Consensus 79 ~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~ 154 (386)
T 3v65_B 79 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV 154 (386)
T ss_dssp SCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred CeECCccccc-eeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence 4455555533 554443 46788888877655544443 3458899999865555544 4578899999886542 2222
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECCC
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVET 713 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d--g~I~iwDl~s 713 (837)
.........+++++.+..++++-...+.|.++++........+.. ......+++.|.++.|+.+... +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 323345678899887777887777778899999875443333332 2457899999988888777653 6899999875
Q ss_pred CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCC
Q 003236 714 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE 790 (837)
Q Consensus 714 ~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg 790 (837)
......+...-.....|+|++++..|+.+. .+.|..+|+.... ....+.........+++. .+ .|+.+. ..+
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~~~ 309 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWHTK 309 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETTTT
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCCCC
Confidence 543333333445688999998877777666 6789999986542 122222234456777773 33 455554 456
Q ss_pred eEEEEECCCCcEE
Q 003236 791 TLELWNMTENKTL 803 (837)
Q Consensus 791 ~I~IwDl~s~~~~ 803 (837)
.|..+|..+++..
T Consensus 310 ~V~~~~~~~G~~~ 322 (386)
T 3v65_B 310 SINSANKFTGKNQ 322 (386)
T ss_dssp EEEEEETTTCCSC
T ss_pred eEEEEECCCCcce
Confidence 8998986555543
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.64 E-value=7.5e-06 Score=84.56 Aligned_cols=191 Identities=15% Similarity=0.130 Sum_probs=133.7
Q ss_pred eEEEEeccCC--CCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCCceeEEeecc-ccceEEEEEcCCCCeEEEEEeCC
Q 003236 588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 588 ~~~~~l~~h~--~~I~~l~fspdg~~Latgs~D--g~I~IWDl~~~~~~~~~~~~h-~~~V~sl~fspdg~~llasgs~D 662 (837)
+.+.++ .|. .....+.|+. +.++.+.+.+ ..|+++|+.+++. +....-. ...-..+++. ++.++...-.+
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~ 84 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVPPPYFGAGIVAW--RDRLIQLTWRN 84 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence 445555 344 4566899986 4555555554 4899999999875 3333322 2122334443 56677777789
Q ss_pred CcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC-----CCEEEEEEcCCCC
Q 003236 663 SEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE 737 (837)
Q Consensus 663 g~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~-----~~V~sl~~spdg~ 737 (837)
+.+.+||..+.+.+..+.....-..+ .++++.|+++..++.|.++|..+.+.+..+.... ..++.+.|. +|+
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999999999875543344 4677888888888999999999988887776422 345667776 676
Q ss_pred EEEEEe-CCeEEEEEcCCCCCceeEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003236 738 YLASVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 738 ~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~-------------~~~~I~sv~fspdg~~L~sgs~d 789 (837)
+++... ++.|.+.|..++ +.+..+.. .....+.++++|+++.|++.+..
T Consensus 162 lyanvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp EEEEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 666554 779999999998 45444431 12356899999998888887764
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.64 E-value=9.6e-06 Score=83.76 Aligned_cols=182 Identities=10% Similarity=0.070 Sum_probs=127.0
Q ss_pred ccc--cceEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECC
Q 003236 638 GHS--TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVE 712 (837)
Q Consensus 638 ~h~--~~V~sl~fspdg~~llasgs~Dg--~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~ 712 (837)
.|. .....+.|+. ..++.+.+.+| .|+++|+.+++.+..+..........+...++.|+.... ++.+.+||..
T Consensus 16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT
T ss_pred CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC
Confidence 454 4566899986 45777777654 899999999999999988776655555555677776654 7899999999
Q ss_pred CCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC--C---CceEEEEEeCCCCEEEEE
Q 003236 713 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 713 s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~--~---~~I~sv~fspdg~~L~sg 786 (837)
+.+.+.++..... -..++ +++..|+.+. ++.|.++|..+.. .+..+... + ..++.+.+. +|. |++.
T Consensus 94 tl~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~---~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyan 165 (243)
T 3mbr_X 94 TLTPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQ---QVGSIKVTAGGRPLDNLNELEWV-NGE-LLAN 165 (243)
T ss_dssp TTEEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEE
T ss_pred cCcEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCe---EEEEEEEccCCcccccceeeEEe-CCE-EEEE
Confidence 9999998875332 23444 4566666655 7899999998874 44443321 1 234556665 554 5555
Q ss_pred E-cCCeEEEEECCCCcEEEecc--------------CCCCeeEEEEeCCCCEEEEEEC
Q 003236 787 G-CYETLELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASASH 829 (837)
Q Consensus 787 s-~dg~I~IwDl~s~~~~~l~~--------------h~~~V~sla~spdg~~LaSgs~ 829 (837)
. .++.|.+.|..+++++.... .....+.|+++|+++.|+..+.
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 5 46799999999999872211 1246789999998876666553
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.63 E-value=1.2e-05 Score=94.56 Aligned_cols=251 Identities=9% Similarity=-0.018 Sum_probs=151.0
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEeccCC----CCeEE-EEEcCCCCEEEEEe------CCCeEEEEEcCCCCceeEEeec
Q 003236 570 LATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG 638 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~~~~l~~h~----~~I~~-l~fspdg~~Latgs------~Dg~I~IWDl~~~~~~~~~~~~ 638 (837)
|++++.|+.|+.+|..+++.+....... ..+.+ ..+. ++ .|++++ .++.|+.+|..+++..-+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888899999999999999986654221 01221 1111 34 455554 3899999999998753332221
Q ss_pred ccc------------------------------------ce-EEEEEcCCCCeEEEEEeCC----------------CcE
Q 003236 639 HST------------------------------------TV-MSLDFHPSKEDLLCSCDNN----------------SEI 665 (837)
Q Consensus 639 h~~------------------------------------~V-~sl~fspdg~~llasgs~D----------------g~I 665 (837)
... .+ ..+++.+....++ .+..+ +.|
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy-~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIY-FGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEE-EECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEE-EeCCCCccccCcccCCCccccceE
Confidence 110 01 1345666655444 44333 489
Q ss_pred EEEECCCCeeeeEEecCCC----------eeEEEEe-cCC---CEEEEEEcCCeEEEEECCCCeEEEEEcCCC-------
Q 003236 666 RYWSINNGSCAGVFKCQSG----------ATQMRFQ-PRL---GRILAAAIENYISILDVETQVCRLKLQGHK------- 724 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~~~~----------i~sl~~s-p~g---~~llags~dg~I~iwDl~s~~~~~~l~~h~------- 724 (837)
..+|.++++.+..+..... ..-+... .++ ..++.++.+|.|+++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 9999999999988875321 1112222 456 356667889999999999999887664211
Q ss_pred ------CCE--------------------------EEEEEcCCCCEEEEEe-----------------------------
Q 003236 725 ------NQV--------------------------HSVCWNTSGEYLASVS----------------------------- 743 (837)
Q Consensus 725 ------~~V--------------------------~sl~~spdg~~Lasgs----------------------------- 743 (837)
.++ ..++++|+..++++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 111 1356677666555431
Q ss_pred -----------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCC-
Q 003236 744 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK- 810 (837)
Q Consensus 744 -----------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~- 810 (837)
++.|..||+.++ +.+...... .+...-.+...+..+++++.|+.|+.||.++++.+ .+.....
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~ 516 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence 256777888777 333333221 11211123345667888999999999999999988 3332221
Q ss_pred CeeEEEEeCCCC-EEEEE
Q 003236 811 LVSSLAASTVNG-MVASA 827 (837)
Q Consensus 811 ~V~sla~spdg~-~LaSg 827 (837)
...-+.+..+|+ |+++.
T Consensus 517 ~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 517 IGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CSCCEEEEETTEEEEEEE
T ss_pred EeccEEEEeCCEEEEEEE
Confidence 122345566776 44443
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.61 E-value=3.1e-06 Score=88.22 Aligned_cols=177 Identities=7% Similarity=0.018 Sum_probs=124.9
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEE
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLK 719 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~ 719 (837)
.....|.|+ ++.++.+.+.+|.|+++|+++++.+..+ .........+.++++.|+... .++.+.+||..+.+.+.+
T Consensus 55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 345688887 4678888888999999999999999888 666655543444556666655 478999999999999998
Q ss_pred EcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeec--CC---CceEEEEEeCCCCEEEEEE-cCCeE
Q 003236 720 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETL 792 (837)
Q Consensus 720 l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~--~~---~~I~sv~fspdg~~L~sgs-~dg~I 792 (837)
+.... .-..++ +|+..|+.+. ++.|.++|..+.. .+..+.. .. ..++.+.|. +|. |++.. .++.|
T Consensus 132 i~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~---v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I 203 (268)
T 3nok_A 132 TRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA---LVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDV 203 (268)
T ss_dssp EECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCC---EEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEE
T ss_pred EeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCe---EEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeE
Confidence 87532 223444 5677777776 8899999998874 4443332 22 234667777 664 66555 46799
Q ss_pred EEEECCCCcEEEecc--------------CCCCeeEEEEeCCCCEEEEEE
Q 003236 793 ELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 793 ~IwDl~s~~~~~l~~--------------h~~~V~sla~spdg~~LaSgs 828 (837)
.+.|..+++++.... -....+.|||+|+++.|+..+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999999872211 124679999999876555544
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.59 E-value=9.3e-06 Score=91.72 Aligned_cols=233 Identities=9% Similarity=0.069 Sum_probs=141.2
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCC----cEEEEECCCC
Q 003236 599 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG 673 (837)
Q Consensus 599 ~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg----~I~vwDl~t~ 673 (837)
....|+|+| ++..|+++...+.|+.+|+.... +..+.........|+|+++++.++++...++ .+.+++.. +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 467899998 45667776666889999998644 3344445566889999999886776665333 23434432 3
Q ss_pred eee--eEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEc-CCCCCEEEEEEcCCCCEEEEEe--CCeE
Q 003236 674 SCA--GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV 747 (837)
Q Consensus 674 ~~i--~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l~-~h~~~V~sl~~spdg~~Lasgs--Dg~I 747 (837)
... ..+........++++|+++.|+++. ..+.|..||...+....... ........|+|+|++++|+.+. .+.|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 222 2333345567888999555555555 56899999998776522222 2234578999999999666665 6789
Q ss_pred EEEEcCCCCC-ceeEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEE-cCCeEEEEECCCCc
Q 003236 748 RVWSIGSGSK-GECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIG-CYETLELWNMTENK 801 (837)
Q Consensus 748 ~IwDl~s~~~-~~~i~~~~~~---------------~~~I~-sv~fs--------pdg~~L~sgs-~dg~I~IwDl~s~~ 801 (837)
.+++...... ...+..+... -.... .+++. +++. |+++. ..+.|+.++ .++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence 9988764210 0011111111 01122 45554 2344 55554 456899998 4566
Q ss_pred EEEeccC------------------CCCeeEEEEeCC-CCEEEEEECCCcEEEe
Q 003236 802 TLTLSAH------------------DKLVSSLAASTV-NGMVASASHDKCVKIW 836 (837)
Q Consensus 802 ~~~l~~h------------------~~~V~sla~spd-g~~LaSgs~DG~I~IW 836 (837)
...+.+. -.....|+++++ +.++++-.....|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5544322 125789999995 5555554455667654
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.59 E-value=1.5e-05 Score=93.49 Aligned_cols=256 Identities=10% Similarity=0.036 Sum_probs=154.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEeccCCC----CeE-EEEEcC---CCC-EEEEEe------CCCeEEEEEcCCCCc
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-DVRFSP---SLS-RLATSS------ADRTVRVWDTENPDY 631 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~----~I~-~l~fsp---dg~-~Latgs------~Dg~I~IWDl~~~~~ 631 (837)
+..|++++.|+.|+.+|.++++.+........ .+. ...+.. +++ .|++++ .++.|+.+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45788888999999999999999866543221 111 111111 233 566654 378999999998875
Q ss_pred eeEEeecccc-----------------------------------------ceEEEEEcCCCCeEEEEEe----------
Q 003236 632 SLRTFTGHST-----------------------------------------TVMSLDFHPSKEDLLCSCD---------- 660 (837)
Q Consensus 632 ~~~~~~~h~~-----------------------------------------~V~sl~fspdg~~llasgs---------- 660 (837)
.- ....... .-..++++|+...+++..+
T Consensus 197 ~W-~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 197 IW-MRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EE-EEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred Ee-ecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 33 2221100 0013456666555554432
Q ss_pred --C-------C----CcEEEEECCCCeeeeEEecCC-------CeeE-EEEe---cCCC---EEEEEEcCCeEEEEECCC
Q 003236 661 --N-------N----SEIRYWSINNGSCAGVFKCQS-------GATQ-MRFQ---PRLG---RILAAAIENYISILDVET 713 (837)
Q Consensus 661 --~-------D----g~I~vwDl~t~~~i~~~~~~~-------~i~s-l~~s---p~g~---~llags~dg~I~iwDl~s 713 (837)
. | +.|..+|.++++.+..+.... .+.. +.+. .+++ .++.++.+|.|+++|.++
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t 355 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence 1 2 589999999999999886421 1111 2222 3563 677788899999999999
Q ss_pred CeEEEEEcCCCC--CE-------------------------------------------EEEEEcCCCCEEEEEe-----
Q 003236 714 QVCRLKLQGHKN--QV-------------------------------------------HSVCWNTSGEYLASVS----- 743 (837)
Q Consensus 714 ~~~~~~l~~h~~--~V-------------------------------------------~sl~~spdg~~Lasgs----- 743 (837)
++.+..+..... .. ..++++|+..++++..
T Consensus 356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~ 435 (582)
T 1flg_A 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence 998876654320 00 1245666544444321
Q ss_pred -----------------------------CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003236 744 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 794 (837)
Q Consensus 744 -----------------------------Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I 794 (837)
++.|..||+.++ +.+....... .+..-.+...+..+++++.|+.|+.
T Consensus 436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A 511 (582)
T 1flg_A 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA 511 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence 467888999888 4444433221 2222222334667888999999999
Q ss_pred EECCCCcEE-EeccCCCCe-eEEEEeCCCC-EEEEE
Q 003236 795 WNMTENKTL-TLSAHDKLV-SSLAASTVNG-MVASA 827 (837)
Q Consensus 795 wDl~s~~~~-~l~~h~~~V-~sla~spdg~-~LaSg 827 (837)
||.++++.+ .+......+ .-+.|..+|+ ||++.
T Consensus 512 ~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 512 FDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 999999988 443322221 2256667887 44443
No 270
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.58 E-value=8.7e-05 Score=80.38 Aligned_cols=276 Identities=8% Similarity=-0.015 Sum_probs=155.0
Q ss_pred CeeeeEEEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec----cCCCCeEEEEEcCCCCEEEEEeC
Q 003236 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSA 617 (837)
Q Consensus 542 g~~~~~~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~----~h~~~I~~l~fspdg~~Latgs~ 617 (837)
+.++..+. + .....+.+|.|.+++..+++ +.+|.| +...+.++.-..+. .....+.+|.|.+ +. ++.++.
T Consensus 24 g~~W~~~~-~-~~~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~ 97 (327)
T 2xbg_A 24 YNPWEAIQ-L-PTTATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGE 97 (327)
T ss_dssp SCCEEEEE-C-SCSSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEE
T ss_pred CCCceEee-c-CCCCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEEC
Confidence 44454443 2 23447999999888877775 456765 33334333222221 2344688999976 34 444556
Q ss_pred CCeEEEEEcCCCCceeEEee---ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe--cCCCeeEEEEec
Q 003236 618 DRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--CQSGATQMRFQP 692 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~---~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~--~~~~i~sl~~sp 692 (837)
++.|+. ..+.++ ...... .+...+..|.+.+++ .+++.+ .++.|+. ....++.-.... ....+..+.+.+
T Consensus 98 ~g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~ 172 (327)
T 2xbg_A 98 PPIMLH-TTDGGQ-SWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP 172 (327)
T ss_dssp TTEEEE-ESSTTS-SCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT
T ss_pred CCeEEE-ECCCCC-CceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC
Confidence 675443 222222 122221 233457778877654 355444 3554432 222233222222 234678899998
Q ss_pred CCCEEEEEEcCCeEEEE-EC--CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee----
Q 003236 693 RLGRILAAAIENYISIL-DV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS---- 765 (837)
Q Consensus 693 ~g~~llags~dg~I~iw-Dl--~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~---- 765 (837)
++..++ ++.++.|..- |- .+.+.+. ......+..+.+.+++.+++++.+|.+++.+...+ .....+.
T Consensus 173 ~~~~~~-~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~~ 246 (327)
T 2xbg_A 173 SGEYVA-VSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPLR 246 (327)
T ss_dssp TSCEEE-EETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTTS
T ss_pred CCcEEE-EECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCcc
Confidence 866554 4455555443 42 3334432 23556789999999998887777888877643222 1111111
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE-ec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~-l~---~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.....+..+++.+++. +++++.++.| ++..+.++... +. .+...+.++.|.+++ .+++++.+|.|.-++
T Consensus 247 ~~~~~~~~v~~~~~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 247 RNSVGFLDLAYRTPNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp SCCSCEEEEEESSSSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred cCCcceEEEEecCCCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 1224588899998776 4555567766 45555565443 22 234568889997554 466677889887654
No 271
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.54 E-value=4.2e-05 Score=82.73 Aligned_cols=227 Identities=7% Similarity=0.012 Sum_probs=145.3
Q ss_pred EEEEEECCCcEEEEeCCCCe--EEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCceeEEeeccccceEE
Q 003236 569 LLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMS 645 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~--~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~s 645 (837)
+|+.+. ...|+.++++... ....+. ....+..++|++.+..|+ +-...+.|..+++.........+...-.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 344433 4678889887653 222222 223567899998655554 44557889999988653212222222345678
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcC
Q 003236 646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 646 l~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl~~sp~g~~llags~--dg~I~iwDl~s~~~~~~l~~ 722 (837)
+++.+.+..++++-...+.|.++++........+ ........+++.|.++.++.+.. .+.|..+++........+..
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 9998877778877777889999998754333332 22345789999998888888774 47899998875433323333
Q ss_pred CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEECCC
Q 003236 723 HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTE 799 (837)
Q Consensus 723 h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs-~dg~I~IwDl~s 799 (837)
.-.....|+|++++..|+.+. .+.|..+|+..... ..+ ..........+++.. ..++... ..+.|..+|..+
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~--~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAV--VKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEE--ecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCC
Confidence 345678999999877777766 67999999875422 222 222344556777753 3455554 456899999876
Q ss_pred CcE
Q 003236 800 NKT 802 (837)
Q Consensus 800 ~~~ 802 (837)
++.
T Consensus 239 G~~ 241 (318)
T 3sov_A 239 GEG 241 (318)
T ss_dssp CCS
T ss_pred CCc
Confidence 653
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.54 E-value=9.3e-05 Score=81.00 Aligned_cols=228 Identities=9% Similarity=0.038 Sum_probs=146.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE
Q 003236 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679 (837)
Q Consensus 600 I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~ 679 (837)
.+|.+..++ .+|+.+ ....|+..++..... ..+......+..++|++.+..++++-...+.|+.+++........+
T Consensus 36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSC-CEEEEE-CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccC-ceeEee-cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 344444443 344443 344588888875442 3333334558899999887878877777889999999876544433
Q ss_pred ec-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCC
Q 003236 680 KC-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGS 754 (837)
Q Consensus 680 ~~-~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s 754 (837)
.. ......+++.+.++.|+.+.. .+.|.++++........+...-.....++++|.+.+|+.+. . +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 32 245678999987777776665 57999999886544444444446789999999776666655 4 6788888765
Q ss_pred CCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003236 755 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKC 832 (837)
Q Consensus 755 ~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~-l~~h~~~V~sla~spdg~~LaSgs~DG~ 832 (837)
.. ..............+++++++..|+++... +.|..+|+....... +.........|++. .+.++++-...+.
T Consensus 192 ~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~ 267 (349)
T 3v64_C 192 SG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS 267 (349)
T ss_dssp CS---CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CC---cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence 42 111122234457899999988888887764 589999987654333 33334567788883 3444444434455
Q ss_pred EEE
Q 003236 833 VKI 835 (837)
Q Consensus 833 I~I 835 (837)
|..
T Consensus 268 V~~ 270 (349)
T 3v64_C 268 INS 270 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 273
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.53 E-value=0.00016 Score=77.94 Aligned_cols=219 Identities=9% Similarity=0.018 Sum_probs=140.7
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC----CeeeeEEec-CCCe
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGA 685 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t----~~~i~~~~~-~~~i 685 (837)
+|+.+. ...|+..|+..... ...+ .....+..++|++.+..++++-..++.|..+++.. ......+.. ....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~-~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEEC-CCeEEEEECCCcce-Eehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 344443 35689999987653 2222 33456789999998787887877789999999886 222222221 2456
Q ss_pred eEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeE
Q 003236 686 TQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 761 (837)
Q Consensus 686 ~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i 761 (837)
..+++.+.++.|+.+. ..+.|.++|+........+.........++++|.+..|+.+. . +.|..+++.... ..
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~ 156 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 156 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eE
Confidence 7899998777777665 468999999986544444443445788999999766665555 3 688888876431 11
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 762 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~---~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
......-.....+++++++..|+++... +.|..+|+.......+. ........|++. .+.++++-...+.|..+
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 1112234567899999988888887754 59999999764433332 223456788885 34455554455666554
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.53 E-value=0.00021 Score=79.77 Aligned_cols=230 Identities=8% Similarity=-0.033 Sum_probs=151.5
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCC---ceeEEeeccccceE
Q 003236 569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPD---YSLRTFTGHSTTVM 644 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~---~~~~~~~~h~~~V~ 644 (837)
+|+.+. ...|+..+++.......+. ....+..|+|++.+..|+.+. ..+.|+.+++.... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 555544 4689999988765554443 456788999998666665554 56889999987522 11223333445678
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEc
Q 003236 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ 721 (837)
Q Consensus 645 sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~--dg~I~iwDl~s~~~~~~l~ 721 (837)
.+++.+.+..++++-...+.|.+.++........+. .......+++.|.+++|+.+.. .+.|..+++........+.
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 899998777788787778899999998665444444 2345789999998888887764 3689999987654443444
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003236 722 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 798 (837)
Q Consensus 722 ~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~ 798 (837)
..-.....|++++++..|+.+. .+.|..+|+..... ..+......-.....+++. +..|+.... .+.|..+|..
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 4446789999999888777776 67899999875432 2222221222345566663 345555554 4589999976
Q ss_pred CCcEE
Q 003236 799 ENKTL 803 (837)
Q Consensus 799 s~~~~ 803 (837)
+++.+
T Consensus 320 ~G~~~ 324 (400)
T 3p5b_L 320 TGSDV 324 (400)
T ss_dssp SCCCC
T ss_pred CCCce
Confidence 66543
No 275
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.50 E-value=1.1e-05 Score=97.91 Aligned_cols=238 Identities=10% Similarity=0.046 Sum_probs=135.4
Q ss_pred CeEEEEEc-CCCCEEEEEEC-CC----cEEEEeCCCC-eEEE-EeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q 003236 557 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 623 (837)
Q Consensus 557 ~V~sl~fS-pdg~~Lasgs~-Dg----~I~VWd~~t~-~~~~-~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~I 623 (837)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+ ......++|+||++.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc---cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886643 22 4999999988 6321 11 1124578899999988887765 36888
Q ss_pred EEcCCCCce-eEEee-ccccceEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCe--e--eeEEec-CCCeeEEEEecCC
Q 003236 624 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGS--C--AGVFKC-QSGATQMRFQPRL 694 (837)
Q Consensus 624 WDl~~~~~~-~~~~~-~h~~~V~sl~fspdg~~llasgs~--Dg~I~vwDl~t~~--~--i~~~~~-~~~i~sl~~sp~g 694 (837)
+++.++... ...+. ........+.|+||+..++++... ...|+++|+.++. . ...... ......+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888775421 22322 233456788999999988877643 3468889998752 2 222221 22334444443 5
Q ss_pred CEEEEEEcC-----CeEEEEECCCCeEEEE-EcCCCC--CEEEEEEcCCCCEEEEE-e-CC--eEEEEEc-------CCC
Q 003236 695 GRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLASV-S-DE--LVRVWSI-------GSG 755 (837)
Q Consensus 695 ~~llags~d-----g~I~iwDl~s~~~~~~-l~~h~~--~V~sl~~spdg~~Lasg-s-Dg--~I~IwDl-------~s~ 755 (837)
+.|+..+.. ..|.++|+.+...... +..+.. .+..+.+. +..|+.. . ++ .|.++|+ .++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 666655543 2688888875211112 222333 34555554 4555444 4 77 4666665 222
Q ss_pred CCceeEEEeecCC-CceEEEEE----eCCCCEE-EEEEcC---CeEEEEECCCCcEE
Q 003236 756 SKGECIHELSCTG-NKFHSCVF----HPTFPSL-LVIGCY---ETLELWNMTENKTL 803 (837)
Q Consensus 756 ~~~~~i~~~~~~~-~~I~sv~f----spdg~~L-~sgs~d---g~I~IwDl~s~~~~ 803 (837)
. .+..+.... ..+..+.+ ++++..+ ++.++. ..|+.+|+.+++..
T Consensus 409 ~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 409 T---GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp T---CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred c---cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 1 022222111 12233322 3455444 444443 27888888877654
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.49 E-value=3.9e-05 Score=80.07 Aligned_cols=199 Identities=11% Similarity=0.150 Sum_probs=133.2
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC--CCeeEEEEecCCCEEEEEEcCCeEEEEECC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ--SGATQMRFQPRLGRILAAAIENYISILDVE 712 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~--~~i~sl~~sp~g~~llags~dg~I~iwDl~ 712 (837)
.+.+-...+..++|+|+++.++++...++.|...|+. ++.+..+... .....+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4455557899999999988888888889999999998 8888887653 468889998887655554456789999876
Q ss_pred CCe---EEEEEc------CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-------cCCCceEEEE
Q 003236 713 TQV---CRLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV 775 (837)
Q Consensus 713 s~~---~~~~l~------~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-------~~~~~I~sv~ 775 (837)
... .+.... ........|+|+|++..|+++. .+...||.+........+..+. .....+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 222221 1344568999999997777776 3344455443110001111111 1234678999
Q ss_pred EeCCCCEEEEEEcCC-eEEEEECCCCcEE---Eecc-C------CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 776 FHPTFPSLLVIGCYE-TLELWNMTENKTL---TLSA-H------DKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 776 fspdg~~L~sgs~dg-~I~IwDl~s~~~~---~l~~-h------~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
++|....+++.+... .|.++|.... .+ .+.. . -.....|+|.++|+++++ ++...+++|
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 999887777766654 8889997755 44 2221 1 125689999999985555 676666655
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.48 E-value=8e-05 Score=82.72 Aligned_cols=228 Identities=9% Similarity=0.032 Sum_probs=148.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe
Q 003236 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680 (837)
Q Consensus 601 ~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~ 680 (837)
.|.+..+ ..+|+.+ ....|+.+++..... ..+......+..++|++.+..++++-...+.|+.+++........+.
T Consensus 80 ~C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 80 SCKALGP-EPVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CEEECSS-CCEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred eECCccc-cceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3444444 3344444 345688888876543 23333345688999998878788777778899999998765444433
Q ss_pred c-CCCeeEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCC
Q 003236 681 C-QSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG 755 (837)
Q Consensus 681 ~-~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~ 755 (837)
. ......+++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+.+. . +.|..+++...
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 2 234677899987777776665 57899999876544444444446789999999877766665 4 67888887654
Q ss_pred CCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 756 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 756 ~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~-l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
. ........-.....++|+|++..|+++... +.|..+|+....... +.........|++. .+.++++-...+.|
T Consensus 236 ~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V 311 (386)
T 3v65_B 236 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI 311 (386)
T ss_dssp S---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred C---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence 2 112222234457899999988888887664 589999987654433 33334567788883 34444454455566
Q ss_pred EEe
Q 003236 834 KIW 836 (837)
Q Consensus 834 ~IW 836 (837)
..+
T Consensus 312 ~~~ 314 (386)
T 3v65_B 312 NSA 314 (386)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 278
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=8.2e-05 Score=83.93 Aligned_cols=235 Identities=10% Similarity=0.120 Sum_probs=143.6
Q ss_pred CeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 003236 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD 630 (837)
Q Consensus 557 ~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~ 630 (837)
....|+|+| ++..|+++...+.|+.+|++++....... .......|+|++++++|+++... ..+.+++.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 457899998 45566666655889999998776554443 45668899999999977666542 134444443222
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEc-CCeEE
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI-ENYIS 707 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~-dg~I~ 707 (837)
.....+. .......++++|++..++++-..++.|+.++...+........ ......++|+|++++|+++.. .+.|.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1112222 2344678899995556776766788999999987765333333 234778999999997766664 57899
Q ss_pred EEECCC--CeE--EEEEcCC---------------CCCEE-EEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003236 708 ILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSKG 758 (837)
Q Consensus 708 iwDl~s--~~~--~~~l~~h---------------~~~V~-sl~~s--------pdg~~Lasgs-Dg~I~IwDl~s~~~~ 758 (837)
.++... +.. +..+.+. -.... .++.. +++.++++-. .+.|+.++. .+
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G--- 371 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG--- 371 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS---
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC---
Confidence 987653 221 1112111 11233 45553 3355555444 668888873 33
Q ss_pred eeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003236 759 ECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 798 (837)
Q Consensus 759 ~~i~~~~~~------------------~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~ 798 (837)
. +..+.+. -.....+++++++..|+++.. ++.|+.++++
T Consensus 372 ~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 372 R-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp E-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred c-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2 2222211 124688999996555666654 4578887754
No 279
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.42 E-value=7.4e-05 Score=80.99 Aligned_cols=185 Identities=14% Similarity=0.194 Sum_probs=130.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC----CC---EEEEEe-C--CCeEEEEEcCCCCceeEE
Q 003236 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSS-A--DRTVRVWDTENPDYSLRT 635 (837)
Q Consensus 566 dg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd----g~---~Latgs-~--Dg~I~IWDl~~~~~~~~~ 635 (837)
...+++....++-+.|||+ +++.+..+.. +.++.+...|+ ++ ++++.. . +++|++|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666667788999999 8888888854 56777777763 22 223333 3 579999988532222444
Q ss_pred eec------cc-cceEEEEE--cCC-CCeEEEEEeCCCcEEEEEC-------CCCeeeeEEecCCCeeEEEEecCCCEEE
Q 003236 636 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSI-------NNGSCAGVFKCQSGATQMRFQPRLGRIL 698 (837)
Q Consensus 636 ~~~------h~-~~V~sl~f--spd-g~~llasgs~Dg~I~vwDl-------~t~~~i~~~~~~~~i~sl~~sp~g~~ll 698 (837)
+.. .. ..+..+|+ ++. +..+++....+|.+..|++ .+.+.++.+...+.+..+.+.+..+.|+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 12 56777887 664 4456777788899999998 2346788888889999999999999999
Q ss_pred EEEcCCeEEEEECC-----CCeEEEEEc-C-CCCCEEEEEE--cCCCC-EEEEEe--CCeEEEEEcC
Q 003236 699 AAAIENYISILDVE-----TQVCRLKLQ-G-HKNQVHSVCW--NTSGE-YLASVS--DELVRVWSIG 753 (837)
Q Consensus 699 ags~dg~I~iwDl~-----s~~~~~~l~-~-h~~~V~sl~~--spdg~-~Lasgs--Dg~I~IwDl~ 753 (837)
++-++..|..||.+ +.+.+..+. + ....+..|++ .++++ ||++++ ++.+.|||..
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999888888865 345565542 2 2347888888 45555 666666 7799999996
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.41 E-value=6.7e-05 Score=84.74 Aligned_cols=233 Identities=14% Similarity=0.111 Sum_probs=139.3
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC---C-cEEEEECCC
Q 003236 599 WITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSINN 672 (837)
Q Consensus 599 ~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D---g-~I~vwDl~t 672 (837)
....|+|+|+ ...|+.+...+.|+.+|..++. +..+........+++|++++. ++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4678999984 4556666555899999997654 444444556689999999988 66554321 1 233333322
Q ss_pred Cee-eeEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECCCCeEEEEE-cC-CCCCEEEEEEcCCCCEEEEEe--CCe
Q 003236 673 GSC-AGVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-QG-HKNQVHSVCWNTSGEYLASVS--DEL 746 (837)
Q Consensus 673 ~~~-i~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~s~~~~~~l-~~-h~~~V~sl~~spdg~~Lasgs--Dg~ 746 (837)
+.. ...+........++++++.+.|+++. .++.|+.+|..++.....+ .. .......|+|+|++++|+.+. .+.
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 111 11222234567788999445555554 5678999999877652222 21 223345799999999666665 678
Q ss_pred EEEEEcCC--CCCceeEEEeecC---------------CCceEEEEE---------eCCCCEEEEEEcCCeEEEEECCCC
Q 003236 747 VRVWSIGS--GSKGECIHELSCT---------------GNKFHSCVF---------HPTFPSLLVIGCYETLELWNMTEN 800 (837)
Q Consensus 747 I~IwDl~s--~~~~~~i~~~~~~---------------~~~I~sv~f---------spdg~~L~sgs~dg~I~IwDl~s~ 800 (837)
|+.+++.. +.. .....+.+. -.....+++ .+++..+++-...+.|+.++. ++
T Consensus 297 I~~~~~d~~~~~~-~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 297 IYRVDYNRETGKL-AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEBCTTTCCB-CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEeCCCCCccc-CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 99988763 211 111111111 123566888 566654444445568999985 56
Q ss_pred cEEEeccC------------------CCCeeEEEEe-CCCCEEEEEECCCcEEEe
Q 003236 801 KTLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW 836 (837)
Q Consensus 801 ~~~~l~~h------------------~~~V~sla~s-pdg~~LaSgs~DG~I~IW 836 (837)
....+.+. -.....|+++ +++.++++-...+.|+.+
T Consensus 375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 55544322 1237789999 566555555556677764
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.39 E-value=3.6e-05 Score=93.28 Aligned_cols=192 Identities=10% Similarity=0.030 Sum_probs=115.2
Q ss_pred CeEEEEEc-CCCCEEEEEeC-C----CeEEEEEcCCC-CceeEEeeccccceEEEEEcCCCCeEEEEEeCC----CcEEE
Q 003236 599 WITDVRFS-PSLSRLATSSA-D----RTVRVWDTENP-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRY 667 (837)
Q Consensus 599 ~I~~l~fs-pdg~~Latgs~-D----g~I~IWDl~~~-~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D----g~I~v 667 (837)
.+...+|+ |||++|+.+.. + ..|+++|+.++ +.....+. .....++|+||++.++++...+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998886543 2 25999999987 52111111 1245789999998888776532 36888
Q ss_pred EECCCCee--eeEEec--CCCeeEEEEecCCCEEEEEEcC---CeEEEEECCCC--eE-EEEE-cCCCCCEEEEEEcCCC
Q 003236 668 WSINNGSC--AGVFKC--QSGATQMRFQPRLGRILAAAIE---NYISILDVETQ--VC-RLKL-QGHKNQVHSVCWNTSG 736 (837)
Q Consensus 668 wDl~t~~~--i~~~~~--~~~i~sl~~sp~g~~llags~d---g~I~iwDl~s~--~~-~~~l-~~h~~~V~sl~~spdg 736 (837)
+++.++.. ...+.. ......+.|+|++++|+....+ ..|+++|+.++ .. +..+ ........++.|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 99987642 233322 2345678999999998877743 47889999875 22 1233 3344555666665444
Q ss_pred CEEEEEe-C--C--eEEEEEcCCCCCceeEEEeecCCC--ceEEEEEeCCCCEEEE-EEcCC--eEEEEEC
Q 003236 737 EYLASVS-D--E--LVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLV-IGCYE--TLELWNM 797 (837)
Q Consensus 737 ~~Lasgs-D--g--~I~IwDl~s~~~~~~i~~~~~~~~--~I~sv~fspdg~~L~s-gs~dg--~I~IwDl 797 (837)
.+++.+. + + .|.++|+.+......+ +..+.. .+..+.+. +..|++ ...++ .|+++|+
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~--li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHV--LVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCE--EECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceee--EECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence 4444444 4 2 6777777642111110 122223 34444444 455554 45556 5777786
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.38 E-value=0.00038 Score=77.60 Aligned_cols=219 Identities=9% Similarity=0.013 Sum_probs=143.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeeEEe-cCCCe
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 685 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~~-~~~~i 685 (837)
+|+.+ ....|+..++..... ..+......+..++|++.+..++++-...+.|+.+++... .....+. .....
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEe-ccceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 44444 346889999886543 2333345678899999987878877777889999998752 2222332 23457
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeE
Q 003236 686 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI 761 (837)
Q Consensus 686 ~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i 761 (837)
..+++.+.++.|+.+.. .+.|.+++++.......+...-.....|+++|.+.+|+.+. .+.|...++.... ..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~ 238 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY 238 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence 78999987677776664 57999999987655555554455689999999776666655 3678888886542 11
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 762 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~---~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
..+...-.....+++++++..|+++... +.|..+|+.......+. .......+|++. .+.++++-...+.|..+
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~ 316 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 316 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence 2222233567899999988888888764 58999999765544332 223456677773 33444444445566544
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.38 E-value=0.00027 Score=76.25 Aligned_cols=215 Identities=9% Similarity=0.020 Sum_probs=139.2
Q ss_pred CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-eEEe-cCCCeeEEEEecCCC
Q 003236 618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK-CQSGATQMRFQPRLG 695 (837)
Q Consensus 618 Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i-~~~~-~~~~i~sl~~sp~g~ 695 (837)
...|+.++++...............+..++|++.+..++++-...+.|..+++..+... ..+. .-.....+++.+.++
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 56799999987542222222233457789999977778877777889999999866422 1222 224577899998777
Q ss_pred EEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEeecCCCce
Q 003236 696 RILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKF 771 (837)
Q Consensus 696 ~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~~~~~~I 771 (837)
.|+.+.. .+.|.++++........+.........++++|.+.+|+.+. .+.|..+++..... .. .....-...
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~--~~~~~l~~P 168 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FI--IINSEIYWP 168 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EE--EECSSCSCE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EE--EEECCCCCc
Confidence 7776654 57999999876543333434556788999999766666555 35788888764321 11 122223456
Q ss_pred EEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEe-ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 772 HSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 772 ~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~~l-~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
..+++++++..|+.+.. .+.|..+|+.......+ .........+++.. +.++++-...+.|..+
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC 234 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence 89999998888888776 45899999876544333 23445667788753 3344444344555543
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.37 E-value=0.00089 Score=69.75 Aligned_cols=201 Identities=12% Similarity=0.096 Sum_probs=136.1
Q ss_pred EEecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 003236 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl 626 (837)
+.+.+-.+.+..++|+|++. ++++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 56777777899999999766 55567788899999988 788777632 2256888999988887777667789999998
Q ss_pred CCCCc--eeEEee------ccccceEEEEEcCCCCeEEEEEeCCC-cEEEEEC-CCCeeeeEEe--------cCCCeeEE
Q 003236 627 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVFK--------CQSGATQM 688 (837)
Q Consensus 627 ~~~~~--~~~~~~------~h~~~V~sl~fspdg~~llasgs~Dg-~I~vwDl-~t~~~i~~~~--------~~~~i~sl 688 (837)
..... .+.... ........|+|+|.+..++++...+. .|+.|+- .....+..+. .-..+..+
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 76542 112221 23455689999999888887666554 5555651 1111122221 12357899
Q ss_pred EEecCCCEEEEEEcC-CeEEEEECCCCeEEEEEcCCC---------CCEEEEEEcCCCCEEEEEeCCeEEEEE
Q 003236 689 RFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWS 751 (837)
Q Consensus 689 ~~sp~g~~llags~d-g~I~iwDl~s~~~~~~l~~h~---------~~V~sl~~spdg~~LasgsDg~I~IwD 751 (837)
+++|..+.+++.+.+ ..|.++|.... .+..+.-.. .....|+|+++|++++++..+.+++|.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence 999988887777664 68888997744 444433221 256899999999866664455666664
No 285
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.36 E-value=0.00037 Score=84.38 Aligned_cols=239 Identities=8% Similarity=-0.037 Sum_probs=153.6
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCC---ceeE
Q 003236 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPD---YSLR 634 (837)
Q Consensus 559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~La-tgs~Dg~I~IWDl~~~~---~~~~ 634 (837)
+|.+..+.. +|+.+ ....|+..++........+. ....+..|+|++....|+ +-...+.|+.+++.... ....
T Consensus 388 ~C~~~~~~p-~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~ 464 (791)
T 3m0c_C 388 ACKAVGSIA-YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 464 (791)
T ss_dssp CCEETTSCC-EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred eeeeccccc-ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE
Confidence 344443322 44444 34578888887665544443 445688999998555555 44456789999987531 1122
Q ss_pred EeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEcC--CeEEEEEC
Q 003236 635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAIE--NYISILDV 711 (837)
Q Consensus 635 ~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~d--g~I~iwDl 711 (837)
.+.........|++.+.+..|+++-...+.|.+.++........+. .......|++.|..++|+.+... +.|.+.++
T Consensus 465 vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 465 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 3332445677899998888888888888999999998554443333 23458899999988888887743 68999998
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 789 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d 789 (837)
........+...-.....|++++.+..|+.+. .+.|.++++..... ..+......-.....+++. +.+|+++...
T Consensus 545 dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~ 621 (791)
T 3m0c_C 545 NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDII 621 (791)
T ss_dssp TSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETT
T ss_pred CCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECC
Confidence 76555444544456789999998877777776 66899999865432 2222111112234556654 3467766654
Q ss_pred -CeEEEEECCCCcEE
Q 003236 790 -ETLELWNMTENKTL 803 (837)
Q Consensus 790 -g~I~IwDl~s~~~~ 803 (837)
+.|...|..+++.+
T Consensus 622 ~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 622 NEAIFSANRLTGSDV 636 (791)
T ss_dssp TTEEEEEETTTCCCC
T ss_pred CCEEEEEeCCCCcce
Confidence 58888887666543
No 286
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.28 E-value=0.00022 Score=80.44 Aligned_cols=235 Identities=10% Similarity=0.058 Sum_probs=141.9
Q ss_pred CCeEEEEEcCC--CCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCC
Q 003236 556 SKVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN 628 (837)
Q Consensus 556 ~~V~sl~fSpd--g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg-----~I~IWDl~~ 628 (837)
.....|+|+|+ +..|+++...+.|+.+|..++....... ......+|+|+++++ |+++...+ .+..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34568999985 4455555544899999998877665543 455689999999999 55544321 233344332
Q ss_pred CCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeE-EecC--CCeeEEEEecCCCEEEEEEc-CC
Q 003236 629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FKCQ--SGATQMRFQPRLGRILAAAI-EN 704 (837)
Q Consensus 629 ~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~-~~~~--~~i~sl~~sp~g~~llags~-dg 704 (837)
.......+. .-.....++++|++..++++-..++.|+.+|..++..... +... .....++|+|++++|+++.. .+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 211111222 2344677889995455666666678899999987776332 2221 22346999999997777665 57
Q ss_pred eEEEEECC--CCeE--EEEEcCC---------------CCCEEEEEE---------cCCCCEEEEEe-CCeEEEEEcCCC
Q 003236 705 YISILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSG 755 (837)
Q Consensus 705 ~I~iwDl~--s~~~--~~~l~~h---------------~~~V~sl~~---------spdg~~Lasgs-Dg~I~IwDl~s~ 755 (837)
.|..++.. ++.. ...+.+. -.....+++ .+++.++++-. .+.|++++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998865 2211 1112111 124677999 66777666655 678998874 33
Q ss_pred CCceeEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEECC
Q 003236 756 SKGECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT 798 (837)
Q Consensus 756 ~~~~~i~~~~~~------------------~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~ 798 (837)
.+..+.+. -.....++++|....|+++.. ++.|+.++++
T Consensus 375 ----~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 ----RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ----EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ----CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22222211 123678888844444555544 5578877754
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.00035 Score=79.60 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=138.6
Q ss_pred CeEEEEEcC-CCCEEEEEeC-CCeEEEEEcCCCCceeEEeecc----ccceEEEEE-------cCCCCeEEEEEeCCC--
Q 003236 599 WITDVRFSP-SLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS-- 663 (837)
Q Consensus 599 ~I~~l~fsp-dg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~h----~~~V~sl~f-------spdg~~llasgs~Dg-- 663 (837)
....|+|+| +...|+++.. .+.|++.|+.++. +..+..- ......|+| ++++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 3455555544 4678888888654 3333221 235889999 999887776665542
Q ss_pred ----cEEEEECCC-Ceee-----eEEecCCCeeEEEEecCCCEEEEEE-cCCeEEEEECC-------CCeE---------
Q 003236 664 ----EIRYWSINN-GSCA-----GVFKCQSGATQMRFQPRLGRILAAA-IENYISILDVE-------TQVC--------- 716 (837)
Q Consensus 664 ----~I~vwDl~t-~~~i-----~~~~~~~~i~sl~~sp~g~~llags-~dg~I~iwDl~-------s~~~--------- 716 (837)
.|.+++... +... ..+........++++|+++.|+++. .++.|..||+. ++..
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266776443 2221 2222234566788999767776666 45789999987 4432
Q ss_pred -----EEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcee--EEEeecC---C------------CceE
Q 003236 717 -----RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSCT---G------------NKFH 772 (837)
Q Consensus 717 -----~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~--i~~~~~~---~------------~~I~ 772 (837)
+..+ +.......|+|+|+|++|+.+. ...|+.++...... .. ...+.+. . ....
T Consensus 298 g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 298 NTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred cccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCCe
Confidence 2222 2334568999999999766665 66888876643211 10 0111111 0 1233
Q ss_pred -EEEEe-------CCCCEEEEEEcCCeEEEEECCCCcEEEeccC------------------------CCCeeEEEEeCC
Q 003236 773 -SCVFH-------PTFPSLLVIGCYETLELWNMTENKTLTLSAH------------------------DKLVSSLAASTV 820 (837)
Q Consensus 773 -sv~fs-------pdg~~L~sgs~dg~I~IwDl~s~~~~~l~~h------------------------~~~V~sla~spd 820 (837)
.++.. .++.++++=..+++|+.++ .++.+.++.+. -.....|+++++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 45554 4454444444566999999 56666554322 123678999997
Q ss_pred -CCEEEEEECCCcEEEe
Q 003236 821 -NGMVASASHDKCVKIW 836 (837)
Q Consensus 821 -g~~LaSgs~DG~I~IW 836 (837)
+.++++=.....|+.+
T Consensus 455 ~g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TTEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCEEEEE
Confidence 5555554456677765
No 288
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.19 E-value=5.9e-05 Score=89.86 Aligned_cols=229 Identities=7% Similarity=-0.031 Sum_probs=130.1
Q ss_pred EEEEEcC-CCCEEEEEeCCC-----------eEEEEEcCCCCceeE-Ee-eccccceEEEEEcCCCCeEEEEEe-CCCcE
Q 003236 601 TDVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSLR-TF-TGHSTTVMSLDFHPSKEDLLCSCD-NNSEI 665 (837)
Q Consensus 601 ~~l~fsp-dg~~Latgs~Dg-----------~I~IWDl~~~~~~~~-~~-~~h~~~V~sl~fspdg~~llasgs-~Dg~I 665 (837)
..+++.+ ++++++.|+.+. .+.+||..++..... .. ..+.....++++..++. +++.|+ .+..+
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v 267 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKT 267 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCce
Confidence 3566777 888888887643 688999988764221 22 12333444577777766 555665 55689
Q ss_pred EEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEE-cC-----CeEEEEECCCCeEEEEE----cCCCCCEEEEEEc
Q 003236 666 RYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWN 733 (837)
Q Consensus 666 ~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags-~d-----g~I~iwDl~s~~~~~~l----~~h~~~V~sl~~s 733 (837)
.+||..+.+....-.. ...-.++++.++++.+++|+ .+ ..+.+||..+.+-...- ......-....+.
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~ 347 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 347 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence 9999987764433222 12234566667888888888 34 57999999887543320 0000000001122
Q ss_pred CCCCEEEEEe-C---------CeEEEEEcCCCCCceeEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC------
Q 003236 734 TSGEYLASVS-D---------ELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE------ 790 (837)
Q Consensus 734 pdg~~Lasgs-D---------g~I~IwDl~s~~~~~~i~~~~~------~~~~I~sv~fsp-dg~~L~sgs~dg------ 790 (837)
.++..++.+. + ..+..||..+..-......... ....-.++.|.. +++.+++|+.++
T Consensus 348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~ 427 (656)
T 1k3i_A 348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 427 (656)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence 3344333333 3 4678888877632111111111 011234445544 566666666432
Q ss_pred -----eEEEEECCCCcEEEec---cCCCCe-eEEEEeCCCCEEEEEECC
Q 003236 791 -----TLELWNMTENKTLTLS---AHDKLV-SSLAASTVNGMVASASHD 830 (837)
Q Consensus 791 -----~I~IwDl~s~~~~~l~---~h~~~V-~sla~spdg~~LaSgs~D 830 (837)
.|.+||..+.....+. .+.... .++++.+++++++.|+.+
T Consensus 428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 6888998887766543 222222 344667899999999865
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.13 E-value=0.0018 Score=78.43 Aligned_cols=216 Identities=9% Similarity=0.029 Sum_probs=140.0
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC----eeeeEEe-cCCCe
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK-CQSGA 685 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~----~~i~~~~-~~~~i 685 (837)
+|+.+ ....|+..++..... ..+......+..|+|++.+..++++-...+.|+.+++... .....+. .....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P 473 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 473 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence 34433 345688888876543 3333345668899999977778878777889999998753 2222332 23457
Q ss_pred eEEEEecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeE
Q 003236 686 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI 761 (837)
Q Consensus 686 ~sl~~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i 761 (837)
..|++.+.++.|+.+.. .+.|.++++........+.........|+++|.+.+|+.+. . +.|.+.++... ...
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~ 550 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY 550 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceE
Confidence 78999988877777765 57999999987655444444556789999999866666655 3 67888888654 222
Q ss_pred EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEecc---CCCCeeEEEEeCCCCEEEEEE-CCCcEE
Q 003236 762 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASAS-HDKCVK 834 (837)
Q Consensus 762 ~~~~~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~~---h~~~V~sla~spdg~~LaSgs-~DG~I~ 834 (837)
..+...-.....|++++....|+++... +.|..+++.......+.. .-....+|++. +..|+.+. ..+.|.
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 626 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEE
Confidence 2223334568899999888888888654 489999997665543322 22345566664 33444444 334444
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.10 E-value=0.0023 Score=75.64 Aligned_cols=219 Identities=9% Similarity=0.006 Sum_probs=145.2
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-CCeeEEE
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-SGATQMR 689 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-~~i~sl~ 689 (837)
+|+.+ ....|+..++++...........-..+..|+|++.+..++++-..++.|+.+++........+... .....++
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 44444 567899999987553222222233568899999988888888778899999999865444444332 3577899
Q ss_pred EecCCCEEEEEEc-CCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCceeEEEee
Q 003236 690 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS 765 (837)
Q Consensus 690 ~sp~g~~llags~-dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs---Dg~I~IwDl~s~~~~~~i~~~~ 765 (837)
+.+.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+.+. .+.|...++..... ..+ .
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l---~ 162 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTL---V 162 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEE---E
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEE---E
Confidence 9988787777765 57899999876543333334445678999999665665555 45788888765432 222 2
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~d-g~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
........+++++++..|+.+... +.|..+|+.......+........+|++.. +.++++-...+.|..
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 245667899999998888888764 589999997655443333444566788764 333334334555554
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=0.00081 Score=76.64 Aligned_cols=241 Identities=14% Similarity=0.133 Sum_probs=145.5
Q ss_pred CeEEEEEcC-CCCEE-EEEECCCcEEEEeCCCCeEEEEeccC---CCCeEEEEE-------cCCCCEEEEEeCCC-----
Q 003236 557 KVESCHFSP-DGKLL-ATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR----- 619 (837)
Q Consensus 557 ~V~sl~fSp-dg~~L-asgs~Dg~I~VWd~~t~~~~~~l~~h---~~~I~~l~f-------spdg~~Latgs~Dg----- 619 (837)
....|+|+| ++..| ++-...+.|++.|.+++.....+... ......|+| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 34444 44444467899998887776655432 235899999 99999777776554
Q ss_pred --eEEEEEcCC-CCce----eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC-------CCee----------
Q 003236 620 --TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC---------- 675 (837)
Q Consensus 620 --~I~IWDl~~-~~~~----~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~-------t~~~---------- 675 (837)
.|.+++... +... ...+.. -.....++++|++..|+++...++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366665443 1221 022222 12456788999777788888888899999997 5543
Q ss_pred -e-eEEec--CCCeeEEEEecCCCEEEEEEc-CCeEEEEEC--CCCeE--EEEEcCC---C------------CCEE-EE
Q 003236 676 -A-GVFKC--QSGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVC--RLKLQGH---K------------NQVH-SV 730 (837)
Q Consensus 676 -i-~~~~~--~~~i~sl~~sp~g~~llags~-dg~I~iwDl--~s~~~--~~~l~~h---~------------~~V~-sl 730 (837)
. ..+.. ......++|+|+++.++++.. .+.|+.+|. ..+.. ...+.+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 1 12222 234678999999997666664 578888654 33322 0122111 1 1244 45
Q ss_pred EEc-------CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC------------------------CCceEEEEEeC
Q 003236 731 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHP 778 (837)
Q Consensus 731 ~~s-------pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~------------------------~~~I~sv~fsp 778 (837)
+.. .++.++++-. ...|+.++. ++ .+.++.+. -.....+++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~ 453 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD 453 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence 554 4555555544 778999983 33 23333221 12356788888
Q ss_pred CCCEEEEEEc-CCeEEEEECCCCcEE
Q 003236 779 TFPSLLVIGC-YETLELWNMTENKTL 803 (837)
Q Consensus 779 dg~~L~sgs~-dg~I~IwDl~s~~~~ 803 (837)
+...|+++.. +..|+.+++......
T Consensus 454 ~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 454 VKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCEEEEEeCCCCEEEEEECCCCccc
Confidence 7334555554 458888888765544
No 292
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.08 E-value=0.00071 Score=74.02 Aligned_cols=226 Identities=8% Similarity=0.063 Sum_probs=123.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeE--EEEec---cCCCCeEEEEEcCC---CCEEEEEeC-C-----Ce
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RT 620 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~--~~~l~---~h~~~I~~l~fspd---g~~Latgs~-D-----g~ 620 (837)
-..-..++|.|||++++ +..+|.|++++ +++. +..+. ........|+|+|+ +..|+++.. . ..
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34567999999998555 45679999998 3432 22221 22456899999998 555555543 2 67
Q ss_pred EEEEEcCCCCc-----eeEEee---ccccceEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCC------
Q 003236 621 VRVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------ 673 (837)
Q Consensus 621 I~IWDl~~~~~-----~~~~~~---~h~~~V~sl~fspdg~~llasgs~-------------Dg~I~vwDl~t~------ 673 (837)
|..|+...... .+..+. +.......|+|.|+|. ++++.+. .|.|..++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 88888774321 111122 1112346899999985 4444321 246666665530
Q ss_pred ------eeeeEEe-cCCCeeEEEEecCCCEEEEEEcC-Ce--------EEEEECCC----------------CeEEEEEc
Q 003236 674 ------SCAGVFK-CQSGATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQ 721 (837)
Q Consensus 674 ------~~i~~~~-~~~~i~sl~~sp~g~~llags~d-g~--------I~iwDl~s----------------~~~~~~l~ 721 (837)
.....+. .......++|+|+.+.|+++... +. |.+..... ..++..+.
T Consensus 186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 265 (352)
T 2ism_A 186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP 265 (352)
T ss_dssp TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence 1111222 12336678999954555555443 22 33332211 01222232
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc---eeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 722 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 722 ~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~---~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
+......++| .+|.++++.. .+.|...++...... .....+......+..+++.|||..+++.
T Consensus 266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2234567777 4566555544 667888877644210 1112222234678899999998654444
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.05 E-value=0.0011 Score=78.20 Aligned_cols=223 Identities=7% Similarity=-0.010 Sum_probs=138.9
Q ss_pred CCCcEEEEeCCCCe-EEEEeccCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCC
Q 003236 575 HDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652 (837)
Q Consensus 575 ~Dg~I~VWd~~t~~-~~~~l~~h~~~I~~l~fspdg~~Latgs~-Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg 652 (837)
....|++.++.... ....+...-..+..|+|++.+..|+.+.. .+.|..++++........+...-.....+++++.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 35678888887643 22222233456789999997666666554 67899999876432122333333568899999987
Q ss_pred CeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCCCCCEEE
Q 003236 653 EDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHS 729 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl~~sp~g~~llags~--dg~I~iwDl~s~~~~~~l~~h~~~V~s 729 (837)
..++++-...+.|.+.++........+ ..-.....+++.|.++.|+.+.. .+.|...++............-.....
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 888888778899999999855433333 22345778999998888887774 367888887654333333334557899
Q ss_pred EEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcE
Q 003236 730 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT 802 (837)
Q Consensus 730 l~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~ 802 (837)
|++++++..|+.+. .+.|..+|+........+ .........+++..+ .|+.+.. .+.|...|..+++.
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence 99999877777776 668888888654221111 111222345566555 5666654 45888889877653
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.02 E-value=0.006 Score=72.02 Aligned_cols=224 Identities=8% Similarity=-0.019 Sum_probs=151.1
Q ss_pred EEEEEECCCcEEEEeCCCCeEEEEec-cCCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCceeEEeeccccceEEE
Q 003236 569 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSL 646 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~~l~-~h~~~I~~l~fspdg~~Latg-s~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl 646 (837)
+|+.+ ..+.|+..++++......+. ..-..+..|+|++.+..|+.+ ..++.|+.++++.... ...+.........|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence 55544 45689999998655433332 223468899999976666554 4578999999876442 22233223457789
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEE-ecCCCeeEEEEecCCCEEEEEEc--CCeEEEEECCCCeEEEEEcCC
Q 003236 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KCQSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH 723 (837)
Q Consensus 647 ~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~-~~~~~i~sl~~sp~g~~llags~--dg~I~iwDl~s~~~~~~l~~h 723 (837)
++++.+..++++-...+.|.+.++........+ ..-.....+++.|..+.|+.+.. .+.|...++........+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence 998887888878777889999999754432222 22355789999998888888774 4688888887554333333 4
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCC
Q 003236 724 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN 800 (837)
Q Consensus 724 ~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~ 800 (837)
-.....|++++++..|+.+. .+.|..+|+..... +. +.........+++.. ..|+.+.. .+.|...|..++
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v---~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV---IADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE---EEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE---eeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence 56788999999888777776 67899999976532 22 222334456777765 35666665 568999997666
Q ss_pred c
Q 003236 801 K 801 (837)
Q Consensus 801 ~ 801 (837)
+
T Consensus 239 ~ 239 (628)
T 4a0p_A 239 Q 239 (628)
T ss_dssp C
T ss_pred C
Confidence 4
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.02 E-value=0.005 Score=72.58 Aligned_cols=277 Identities=9% Similarity=-0.014 Sum_probs=161.4
Q ss_pred CCCeEEEEEcCCCCEEE-EEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCc
Q 003236 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDY 631 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~La-sgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~--Dg~I~IWDl~~~~~ 631 (837)
-.....+++.+.+..|+ +-...+.|.+.+++.......+...-.....|++.|.+.+|+.+.. .+.|...+++....
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 35688999999655554 4456789999998764433333344456789999997666666654 35777777764332
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-cCCCeeEEEEecCCCEEEEEEc-CCeEEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-CQSGATQMRFQPRLGRILAAAI-ENYISIL 709 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~~~~i~sl~~sp~g~~llags~-dg~I~iw 709 (837)
.......-.....|++++++..++++-...+.|..+|+.......... .......+++..+ .++.+.. .+.|...
T Consensus 163 -~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~ 239 (619)
T 3s94_A 163 -FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILAC 239 (619)
T ss_dssp -EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEE
T ss_pred -EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEE
Confidence 222222345678999999888788777777889999997544333222 1122345666544 5555553 5788888
Q ss_pred ECCCCeEEEEEcC-----------CC---------------------------CCEEEEEE-----cCCC--------CE
Q 003236 710 DVETQVCRLKLQG-----------HK---------------------------NQVHSVCW-----NTSG--------EY 738 (837)
Q Consensus 710 Dl~s~~~~~~l~~-----------h~---------------------------~~V~sl~~-----spdg--------~~ 738 (837)
|..+++....+.. |. ....|.|- .+|+ .+
T Consensus 240 d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~ 319 (619)
T 3s94_A 240 NKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATEL 319 (619)
T ss_dssp ESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEE
T ss_pred ECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceE
Confidence 8876543222111 10 00111110 0111 24
Q ss_pred EEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEe-ccCCCCeeEEE
Q 003236 739 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL-SAHDKLVSSLA 816 (837)
Q Consensus 739 LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~~l-~~h~~~V~sla 816 (837)
|+.+..+.|+..++...........+. .-..+..++|++.+..|+.+.. .+.|+.+++.......+ ...-..+..++
T Consensus 320 Ll~~~~~~i~~i~l~~~~~~~~~~~~~-~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlA 398 (619)
T 3s94_A 320 LLLARRTDLRRISLDTPDFTDIVLQLE-DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIA 398 (619)
T ss_dssp EEEEESSCEEEEESSSTTCCCEECCCS-CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEcccceEEEecCCCccceeEEecc-ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceE
Confidence 555556677777776553211111111 1245778999997777777765 56899999876544333 23335678899
Q ss_pred EeCCCCEEEEEE-CCCcEEE
Q 003236 817 ASTVNGMVASAS-HDKCVKI 835 (837)
Q Consensus 817 ~spdg~~LaSgs-~DG~I~I 835 (837)
+...++.|+.+. ..+.|.+
T Consensus 399 vD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 399 VDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp EETTTTEEEEEETTTTEEEE
T ss_pred EecccCcEEEEeCCCCcEEE
Confidence 987555444443 3455544
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=98.01 E-value=0.0039 Score=68.20 Aligned_cols=230 Identities=10% Similarity=0.051 Sum_probs=127.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCe-EEEEec---cCCCCeEEEEEcCC---CCEEEEEeC----C----C
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----R 619 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-~~~~l~---~h~~~I~~l~fspd---g~~Latgs~----D----g 619 (837)
-..-..++|.|||++++ +..+|.|++++ .+++ .+..+. ........|+|+|+ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997554 56679999997 3444 222221 22356889999997 555555443 3 6
Q ss_pred eEEEEEcCCCC------cee-EEeec-cccceEEEEEcCCCCeEEEEEeC------------CCcEEEEECCCCe-----
Q 003236 620 TVRVWDTENPD------YSL-RTFTG-HSTTVMSLDFHPSKEDLLCSCDN------------NSEIRYWSINNGS----- 674 (837)
Q Consensus 620 ~I~IWDl~~~~------~~~-~~~~~-h~~~V~sl~fspdg~~llasgs~------------Dg~I~vwDl~t~~----- 674 (837)
.|..|+..... ..+ ..+.. .......|+|.|+|..++..++. .|.|..++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 78888876541 111 11221 11234679999998644433321 2456666654220
Q ss_pred --eeeEEe-cCCCeeEEEEecCCCEEEEEEcCC----eEEEEECCC----------------CeEEEEEcCCCCCEEEEE
Q 003236 675 --CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVET----------------QVCRLKLQGHKNQVHSVC 731 (837)
Q Consensus 675 --~i~~~~-~~~~i~sl~~sp~g~~llags~dg----~I~iwDl~s----------------~~~~~~l~~h~~~V~sl~ 731 (837)
....+. .......++|+|+.+.|+++.... .|.+..... ..++..+......+..++
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 011121 234467899999555566655432 344433211 012233311234577888
Q ss_pred Ec-------CCCCEEEEEe-CCeEEEEEcCCCCCceeEEEe-ecCCCceEEEEEeCCCCEEEEE
Q 003236 732 WN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 732 ~s-------pdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~-~~~~~~I~sv~fspdg~~L~sg 786 (837)
|. .+|.++++.. .+.|...++...........+ ......+..+++.|||..+++.
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 83 4666666555 678888888753211111222 2224578899999999644443
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.98 E-value=1.4e-05 Score=95.96 Aligned_cols=226 Identities=8% Similarity=-0.022 Sum_probs=137.8
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCC---CceeEEeeccccceEEEEEcCC
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS 651 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~---~~~~~~~~~h~~~V~sl~fspd 651 (837)
.+.|++.++.+......+.. ...+..|+|++.+..|+.+. ..+.|+.+++... ......+.........|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 46788888887665544433 34577899998766666654 4578999998751 1111222212234567888876
Q ss_pred CCeEEEEEeCCCcEEEEECCCCeeeeEEec-CCCeeEEEEecCCCEEEEEEcC--CeEEEEECCCCeEEEEEcCCCCCEE
Q 003236 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKC-QSGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQGHKNQVH 728 (837)
Q Consensus 652 g~~llasgs~Dg~I~vwDl~t~~~i~~~~~-~~~i~sl~~sp~g~~llags~d--g~I~iwDl~s~~~~~~l~~h~~~V~ 728 (837)
+..++++-...+.|.++++........+.. ......+++.|.+++|+.+... +.|.++++........+...-...+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 666776766678999999886544433332 2456788999987777766542 6888888764322222222234567
Q ss_pred EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEe
Q 003236 729 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL 805 (837)
Q Consensus 729 sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~~l 805 (837)
.|+|++++..|+.+. .+.|.++++..... ..+............+++..+ .|+++.. .+.|..+|..+++.+..
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEE
Confidence 899999876666555 66899999875321 222111111223345555544 5555544 56899999888876643
No 298
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.97 E-value=0.0016 Score=70.31 Aligned_cols=232 Identities=11% Similarity=0.030 Sum_probs=131.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY 631 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~---~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~ 631 (837)
...+.+|.|++ +..++ ++.++.|+. ..+.++.-..+. .+.+.+..|.+.+++..++++ .++.|.. ..+.++.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 34588899986 44444 455665544 333333322222 234567888887776665555 4564422 1222222
Q ss_pred eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEE-EEC--CCCeeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEE
Q 003236 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSI--NNGSCAGVFKCQSGATQMRFQPRLGRILAAAIENYISI 708 (837)
Q Consensus 632 ~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~v-wDl--~t~~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~i 708 (837)
-......+...+..+++.+++. +++.+. +|.|+. +|- .+.+.+. ......+..+.+.+++. +++++.+|.+++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~ 229 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGR-LWMIVNGGKIAF 229 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSC-EEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCC-EEEEeCCceEEE
Confidence 1222334556789999999865 554444 455544 332 2222221 12245678888888865 556667788777
Q ss_pred EECCCCeEEEEEcC----CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEE
Q 003236 709 LDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL 784 (837)
Q Consensus 709 wDl~s~~~~~~l~~----h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~ 784 (837)
.+...++.-..+.. +...+.++.+.+++.+++++.++.| ++..+.+.....+.........+.++.|.+++ .++
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~ 307 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGF 307 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEE
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceE
Confidence 65333333222221 2235889999998888888888877 45555553322221111123567888887554 477
Q ss_pred EEEcCCeEEEEEC
Q 003236 785 VIGCYETLELWNM 797 (837)
Q Consensus 785 sgs~dg~I~IwDl 797 (837)
+++.+|.|.-++-
T Consensus 308 ~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 308 ILGQKGILLRYVT 320 (327)
T ss_dssp EECSTTEEEEECC
T ss_pred EEcCCceEEEEcC
Confidence 7888888877653
No 299
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.94 E-value=0.0022 Score=68.89 Aligned_cols=197 Identities=10% Similarity=0.115 Sum_probs=122.8
Q ss_pred CCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCCCeEEEE-ecc----CC--CCeEEEEE---cCCCCEEEEEe--------
Q 003236 556 SKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----HT--QWITDVRF---SPSLSRLATSS-------- 616 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~t~~~~~~-l~~----h~--~~I~~l~f---spdg~~Latgs-------- 616 (837)
---.|++|++....|..++ ..++|..||...+..... +.. .. ..+..|.| .++++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 3345799988555655555 789999999875544333 322 11 13689999 68877777543
Q ss_pred -----CCCeEEEEEcC---CCCceeEE-eeccc-----------cceEEEEEcCCCCeEEEEEeCC-CcEEEEECCCCee
Q 003236 617 -----ADRTVRVWDTE---NPDYSLRT-FTGHS-----------TTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINNGSC 675 (837)
Q Consensus 617 -----~Dg~I~IWDl~---~~~~~~~~-~~~h~-----------~~V~sl~fspdg~~llasgs~D-g~I~vwDl~t~~~ 675 (837)
.+..|..||+. +++..... +.... ..+..++..++|+.++ +++.. +.|..++.....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYV-t~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYV-AFALGMPAIARVSADGKT- 170 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEE-EEEESSCEEEEECTTSCC-
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEE-eCCCCCCeEEEEeCCCCE-
Confidence 26789999998 65542222 21111 2478999999987554 67667 778777776442
Q ss_pred eeEEec-------CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE--EEEE-cCC---CCCEEEE-EEcCCCCEEEE
Q 003236 676 AGVFKC-------QSGATQMRFQPRLGRILAAAIENYISILDVETQVC--RLKL-QGH---KNQVHSV-CWNTSGEYLAS 741 (837)
Q Consensus 676 i~~~~~-------~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~--~~~l-~~h---~~~V~sl-~~spdg~~Las 741 (837)
+..+.. ....+.|+++|+++.|++....+.|..+|+.+... +..- .+. -.....| ..-.+|+.|++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 222221 12367999999999999988899999999885432 2111 021 1223443 33347777555
Q ss_pred Ee--CCeEEEEEcCC
Q 003236 742 VS--DELVRVWSIGS 754 (837)
Q Consensus 742 gs--Dg~I~IwDl~s 754 (837)
+. .+.+.+.+...
T Consensus 251 ~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 251 GARAPYAISFRSWDN 265 (334)
T ss_dssp EEETTEEEEEECSST
T ss_pred EcCCCCEEEEECCCC
Confidence 54 55555555444
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.91 E-value=0.018 Score=61.48 Aligned_cols=234 Identities=13% Similarity=0.172 Sum_probs=155.8
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecc
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h 639 (837)
+.-.+|..+.||.-. ..++.|||+++...+..+.- ...|..=+|-.+. .|+..+ +..|+-|+++....+.+.+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 344588888888766 67899999999988888764 4567777887554 454443 4579999998766777777776
Q ss_pred c----cceEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeeEEecCCCeeEE-EEecCC----CEEEE-EEc-
Q 003236 640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQM-RFQPRL----GRILA-AAI- 702 (837)
Q Consensus 640 ~----~~V~sl~fspdg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~~i~sl-~~sp~g----~~lla-gs~- 702 (837)
. ..|.....+++.+.++++|- -.|.+.+|..+.+.. ..+.. ...+. .+-.++ ..+++ +..
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 223 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG--HAASFAQFKMEGNAEESTLFCFAVRG 223 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECC--SEEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceeee--eeeeeEEEecCCCCCCceEEEEEEec
Confidence 4 45777788888888887763 236788888875432 22221 11111 111111 12322 222
Q ss_pred --CCeEEEEECCCC--------e-EEEEEcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003236 703 --ENYISILDVETQ--------V-CRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 703 --dg~I~iwDl~s~--------~-~~~~l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
.+.+.|.++... + .+..+.. ..+-..++..++.-.+++..+ -|.|++||+.++ .++..-+..
T Consensus 224 ~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg---t~i~~nrIS 300 (365)
T 2xzh_A 224 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 300 (365)
T ss_dssp TTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC---cEEEEeccC
Confidence 258889888432 1 1222221 234456778888777777777 999999999999 788887777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 768 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
...|...+.+....-+++....|.|.-..+++..++
T Consensus 301 ~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 301 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 888877777666666777788888777777666544
No 301
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.90 E-value=0.02 Score=68.95 Aligned_cols=263 Identities=11% Similarity=0.072 Sum_probs=155.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~ 634 (837)
...|.++....+| .|.+|+.+| +.+||..+.+...........|.++.. .++ .|..++.+ -|..||..+... .
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~--~ 134 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL--T 134 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE--E
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE--E
Confidence 3568898888776 566666655 889998876543311112345777754 344 56666666 588889876542 2
Q ss_pred Eee-----ccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec------CCCeeEEEEecCCCEEEEEEcC
Q 003236 635 TFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC------QSGATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 635 ~~~-----~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~------~~~i~sl~~sp~g~~llags~d 703 (837)
.+. .....|.++....++...+ +.. +.|..+|..+++....... ...|.++....+++.|.+++.
T Consensus 135 ~~~~~~~~l~~~~i~~i~~d~~g~lWi--gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~- 210 (758)
T 3ott_A 135 SFDTRRNGLPNNTIYSIIRTKDNQIYV--GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE- 210 (758)
T ss_dssp EECHHHHCCSCSCEEEEEECTTCCEEE--EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred EeccCCCCcCCCeEEEEEEcCCCCEEE--EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence 221 1234688888887765333 443 4588899877654322111 123777877777777666764
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEe-----ecCCCceEEEEEeC
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHP 778 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~-----~~~~~~I~sv~fsp 778 (837)
+.|..||..+++...........|.++....+|.+.+.. ++-|.+++..+... ..+... ......|.++....
T Consensus 211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~ 288 (758)
T 3ott_A 211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ 288 (758)
T ss_dssp EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence 568899988765432211123458889888888877755 55688888766421 111100 01234688888888
Q ss_pred CCCEEEEEEcCCeEEEEECCCC-cEEEec-----cCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 779 TFPSLLVIGCYETLELWNMTEN-KTLTLS-----AHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 779 dg~~L~sgs~dg~I~IwDl~s~-~~~~l~-----~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
+|. |.+|+..| |.++..... +..... .....|.++....+|.+.+. +.+|.+
T Consensus 289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~ 346 (758)
T 3ott_A 289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLI 346 (758)
T ss_dssp TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEE
T ss_pred CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcce
Confidence 776 66666666 555443221 111111 12346888888777776554 355533
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.88 E-value=0.0028 Score=68.66 Aligned_cols=180 Identities=10% Similarity=0.159 Sum_probs=119.6
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeeEEecCCCeeEEEEecC----CC---EEEEEEc---CCeEEEEEC--CCCeEEEEEc
Q 003236 654 DLLCSCDNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPR----LG---RILAAAI---ENYISILDV--ETQVCRLKLQ 721 (837)
Q Consensus 654 ~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~----g~---~llags~---dg~I~iwDl--~s~~~~~~l~ 721 (837)
.++++....+.+.+||+ .|+.+..+.. +.++.+.+-|. ++ .+++... ++.|.+|++ .++. +..+.
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECS
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeecc
Confidence 34656677889999999 7888888765 66777777663 22 2334443 478999977 3433 44442
Q ss_pred C------CC-CCEEEEEE--cCC-CC-EEEEEe-CCeEEEEEcCCC----CCceeEEEeecCCCceEEEEEeCCCCEEEE
Q 003236 722 G------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 722 ~------h~-~~V~sl~~--spd-g~-~Lasgs-Dg~I~IwDl~s~----~~~~~i~~~~~~~~~I~sv~fspdg~~L~s 785 (837)
. .. ..+..+|+ ++. +. ++++.. +|.+..|++... ...+.++++.. ...+..|++.+....|++
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 11 56677888 774 54 455555 899999998432 12345666654 567899999999999999
Q ss_pred EEcCCeEEEEECC-----CCcEEEeccC---CCCeeEEEEe--CCCC-EEEEEE-CCCcEEEeC
Q 003236 786 IGCYETLELWNMT-----ENKTLTLSAH---DKLVSSLAAS--TVNG-MVASAS-HDKCVKIWK 837 (837)
Q Consensus 786 gs~dg~I~IwDl~-----s~~~~~l~~h---~~~V~sla~s--pdg~-~LaSgs-~DG~I~IWd 837 (837)
+-.+..|..|+.+ +++.+...+. ...+..|++- ++++ +|++++ .+..+.|||
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 9999888888865 3445543322 2468888884 4555 666665 566777775
No 303
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.88 E-value=0.052 Score=68.39 Aligned_cols=272 Identities=9% Similarity=0.010 Sum_probs=152.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCC-ce
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPD-YS 632 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspd--g~~Latgs~Dg~I~IWDl~~~~-~~ 632 (837)
.+|.=..|...|..-+.+..+....+|... ++....--....--....|+.. ..-++..+ ++.++|..+++-. ..
T Consensus 652 ~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~ 729 (1158)
T 3ei3_A 652 QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLH 729 (1158)
T ss_dssp SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEE
T ss_pred CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCee
Confidence 345444444444433333344555555433 2322221111122234445432 23344443 4568988876432 22
Q ss_pred eEEeeccccceEEEEEcCCCCeEEEEEeC------------------------------------------------CCc
Q 003236 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------------------------NSE 664 (837)
Q Consensus 633 ~~~~~~h~~~V~sl~fspdg~~llasgs~------------------------------------------------Dg~ 664 (837)
++.+. -...+..++++|..+.+++.++. -+.
T Consensus 730 ~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~ 808 (1158)
T 3ei3_A 730 IRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHN 808 (1158)
T ss_dssp EEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEE
T ss_pred EEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEE
Confidence 33332 34567788888776654443321 124
Q ss_pred EEEEECCCCeeeeEEecCC--CeeEEEEec---C-CCEEEEEEc----------CCeEEEEECCCCeEEEEE-cCCCCCE
Q 003236 665 IRYWSINNGSCAGVFKCQS--GATQMRFQP---R-LGRILAAAI----------ENYISILDVETQVCRLKL-QGHKNQV 727 (837)
Q Consensus 665 I~vwDl~t~~~i~~~~~~~--~i~sl~~sp---~-g~~llags~----------dg~I~iwDl~s~~~~~~l-~~h~~~V 727 (837)
|+++|..+.+.+..+.... .+.+++... + ..++++|+. .|.|++|++..++..... ...++.|
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v 888 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV 888 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence 7778888777776666533 345554322 2 467877772 478999998755332222 1246789
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--ECCCCcEEEe
Q 003236 728 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL 805 (837)
Q Consensus 728 ~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw--Dl~s~~~~~l 805 (837)
++++-- +| +|+++-..+|+||++....... ....... .+..+.....+.+|++|.....|.++ +...++...+
T Consensus 889 ~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~ 963 (1158)
T 3ei3_A 889 YSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI 963 (1158)
T ss_dssp EEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred EEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence 888754 34 6666778899999998653222 1111111 13333343457789999988866664 5555655543
Q ss_pred --ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 806 --SAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 806 --~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
..+...++++.+-.+ ..++.+..+|.|.+.
T Consensus 964 a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC 995 (1158)
T ss_dssp EECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred EeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence 345667888888654 467778999998875
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.85 E-value=0.034 Score=59.28 Aligned_cols=247 Identities=9% Similarity=0.153 Sum_probs=151.1
Q ss_pred CCcEEEEeCCCCeEEEE-eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCe
Q 003236 576 DKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~-l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~ 654 (837)
+..|.|.|+.+...+.+ --.-+ +.-.+|..+.||.-. ..++.|||+++.. .++.+.- ...|.-=.|-.+..
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~-klks~~~-~e~VvfWkWis~~~- 119 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKS-KMKAHTM-TDDVTFWKWISLNT- 119 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTE-EEEEEEC-SSCEEEEEECSSSE-
T ss_pred CCEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhh-hhcceec-CCccEEEEecCCCe-
Confidence 34788889887544322 11112 333578877777765 6789999999854 3555543 35676667765533
Q ss_pred EEEEEeCCCcEEEEECCC-CeeeeEEec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEc
Q 003236 655 LLCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQ 721 (837)
Q Consensus 655 llasgs~Dg~I~vwDl~t-~~~i~~~~~-----~~~i~sl~~sp~g~~llags~-------dg~I~iwDl~s~~~~~~l~ 721 (837)
+.+.+ +..|+-|++.. ..+.+.+.. ...|.....+++.++++..+- .|.+.+|..+.+. -..+.
T Consensus 120 L~lVT--~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ie 196 (365)
T 2xzh_A 120 VALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIE 196 (365)
T ss_dssp EEEEE--SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEEC
T ss_pred EEEEc--CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cceee
Confidence 33233 56899999974 456666654 344777788888888776553 3678899988654 34566
Q ss_pred CCCCCEEEEEEcCC---CCEEEEEe----CCeEEEEEcCCCC--C----ceeEEEeec---CCCceEEEEEeCCCCEEEE
Q 003236 722 GHKNQVHSVCWNTS---GEYLASVS----DELVRVWSIGSGS--K----GECIHELSC---TGNKFHSCVFHPTFPSLLV 785 (837)
Q Consensus 722 ~h~~~V~sl~~spd---g~~Lasgs----Dg~I~IwDl~s~~--~----~~~i~~~~~---~~~~I~sv~fspdg~~L~s 785 (837)
+|......+.+..+ ..+++.+. .+.++|.++.... . .+.+..+-. ...-..++..++....++.
T Consensus 197 Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 197 GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEE
Confidence 67544433333211 12344443 2589999985531 1 111111111 1344567888999999999
Q ss_pred EEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 786 IGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 786 gs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
.+..|.|++||+.++.++ .-.-....|..-+-+.+..=++.....|.|
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEE
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEE
Confidence 999999999999999988 333344455544444333333344455544
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.85 E-value=0.0028 Score=69.27 Aligned_cols=195 Identities=8% Similarity=0.052 Sum_probs=112.4
Q ss_pred CeEEEEEcCCCCEEEEE------------eCCCeEEEEEcCCCCceeE--Eeec-----cccceEEEEEcC--CCC-eEE
Q 003236 599 WITDVRFSPSLSRLATS------------SADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKE-DLL 656 (837)
Q Consensus 599 ~I~~l~fspdg~~Latg------------s~Dg~I~IWDl~~~~~~~~--~~~~-----h~~~V~sl~fsp--dg~-~ll 656 (837)
...++...++|..++++ ..+|.|.++|..+...... .+.+ .......|.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566666665444443 2689999999974322122 2222 234667788766 344 344
Q ss_pred EEEeC--CCcEEEEECCCC--eee--eEEec--CCCeeEEEEecCCCEEEEEE-----------------cCCeEEEEEC
Q 003236 657 CSCDN--NSEIRYWSINNG--SCA--GVFKC--QSGATQMRFQPRLGRILAAA-----------------IENYISILDV 711 (837)
Q Consensus 657 asgs~--Dg~I~vwDl~t~--~~i--~~~~~--~~~i~sl~~sp~g~~llags-----------------~dg~I~iwDl 711 (837)
++-.. +..|.+|++... ... ..+.. -...+.+.+.++|..+++.. ..+.|+.||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44333 457777776543 222 22222 23478899999877655543 1245666666
Q ss_pred CCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeC-CCCEEEEEEc
Q 003236 712 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGC 788 (837)
Q Consensus 712 ~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fsp-dg~~L~sgs~ 788 (837)
..-+ . +...-...+.|+|+||++.|+++. .+.|..|++...........+ ........+++.+ +|.+.+++..
T Consensus 211 ~~~~--~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 NDVR--V-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp TCCE--E-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred CeEE--E-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 4222 1 222234578999999999888776 779999999743222223333 2356678899999 5886665553
Q ss_pred CC-eEEEEEC
Q 003236 789 YE-TLELWNM 797 (837)
Q Consensus 789 dg-~I~IwDl 797 (837)
++ .|..||.
T Consensus 287 ~g~~v~~~~P 296 (355)
T 3sre_A 287 NGMRIFFYDA 296 (355)
T ss_dssp CHHHHHSCCT
T ss_pred CceEEEEECC
Confidence 43 4444443
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.83 E-value=0.0063 Score=65.33 Aligned_cols=209 Identities=10% Similarity=0.049 Sum_probs=133.9
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCceeEEeec----c--ccceEEEEE---cCCCCeEEEEEe--
Q 003236 593 LEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----H--STTVMSLDF---HPSKEDLLCSCD-- 660 (837)
Q Consensus 593 l~~h~~~I~~l~fspdg~~Latgs-~Dg~I~IWDl~~~~~~~~~~~~----h--~~~V~sl~f---spdg~~llasgs-- 660 (837)
+....-.-.+++|++....|+.++ ..++|..||...+......+.+ . ...+..|.| .|+ ..++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccc
Confidence 444455667899988666666666 7999999999855432222222 1 114579999 688 44555443
Q ss_pred -----------CCCcEEEEECC---CCeeeeEEecC--------------CCeeEEEEecCCCEEEEEEcC-CeEEEEEC
Q 003236 661 -----------NNSEIRYWSIN---NGSCAGVFKCQ--------------SGATQMRFQPRLGRILAAAIE-NYISILDV 711 (837)
Q Consensus 661 -----------~Dg~I~vwDl~---t~~~i~~~~~~--------------~~i~sl~~sp~g~~llags~d-g~I~iwDl 711 (837)
.+..|..||+. +++.+...... .....++..++|+.+++++.. +.|..++.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 25779999999 88887766631 247789999999999999998 99988888
Q ss_pred CCCeEEEEE-cC----CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEee-c---CCCceEEE-EEeCCC
Q 003236 712 ETQVCRLKL-QG----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-C---TGNKFHSC-VFHPTF 780 (837)
Q Consensus 712 ~s~~~~~~l-~~----h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~-~---~~~~I~sv-~fspdg 780 (837)
........+ .. .....+.|+++|++.+|++.. .+.|..+|+...... .+..-. + .......+ ..-.+|
T Consensus 167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccccccccCC
Confidence 754322222 11 122367999999999888887 889999999843110 122110 1 11223443 444567
Q ss_pred CEEEEEE-cCCeEEEEECCCCcEE
Q 003236 781 PSLLVIG-CYETLELWNMTENKTL 803 (837)
Q Consensus 781 ~~L~sgs-~dg~I~IwDl~s~~~~ 803 (837)
+.++++. ..+.+.+.+.+..+..
T Consensus 246 ~vllV~~~~~~~~~l~S~DgW~sa 269 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDNWKSA 269 (334)
T ss_dssp EEEEEEEETTEEEEEECSSTTSEE
T ss_pred EEEEEEcCCCCEEEEECCCCccee
Confidence 7755554 4556666666655443
No 307
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.82 E-value=0.0044 Score=67.65 Aligned_cols=224 Identities=12% Similarity=0.061 Sum_probs=123.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeEEe---eccccceEEEEEcCC---CCeEEEEEeCC-----CcE
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI 665 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-~~~~~---~~h~~~V~sl~fspd---g~~llasgs~D-----g~I 665 (837)
.....++|.|+|++ +++..+|.|++++ . +.. .+..+ .........|+|+|+ +..++++.... ..|
T Consensus 31 ~~P~~ia~~pdG~l-~V~e~~g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGM-LIAERPGRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCE-EEEETTTEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeE-EEEeCCCeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45679999999985 4455679999998 3 321 11111 112356889999998 55566555433 678
Q ss_pred EEEECCCCee-----e-eEEec----CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC--------
Q 003236 666 RYWSINNGSC-----A-GVFKC----QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-------- 714 (837)
Q Consensus 666 ~vwDl~t~~~-----i-~~~~~----~~~i~sl~~sp~g~~llags~-------------dg~I~iwDl~s~-------- 714 (837)
..|+...+.. + ..+.. ......++|.|++..+++.+. .+.|..+|....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 8888775421 1 11221 113468999999865555432 146666666531
Q ss_pred ------eEEEEEcCCCCCEEEEEEcC-CCCEEEEEe-CCeE------EEEEcCCCCC---------------ceeEEEee
Q 003236 715 ------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHELS 765 (837)
Q Consensus 715 ------~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs-Dg~I------~IwDl~s~~~---------------~~~i~~~~ 765 (837)
..+.. .++ .....++|+| ++.++++-. .+.+ .|.-+..+.. ...+..+
T Consensus 188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 11111 122 2356789999 667666544 2221 2333332220 0122222
Q ss_pred cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc-------EEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 766 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 766 ~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~-------~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
........++| .++..+++.-..+.|...++.... ...+......+..+++.|||.++++..
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 12234566777 355544443345578877775432 122223346789999999998777664
No 308
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.82 E-value=0.05 Score=65.45 Aligned_cols=267 Identities=8% Similarity=0.045 Sum_probs=156.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-cc----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-~~----h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~ 630 (837)
..|.++....+|.+.+ |+.+ -|..|+..+.+..... .. ....|.++....++..|..|+. +-|..+|..+..
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ 222 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe
Confidence 4688888888887655 4544 5888888776543221 11 1234888888877776666664 458888887654
Q ss_pred ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec--------CCCeeEEEEecCCCEEEEEEc
Q 003236 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC--------QSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 631 ~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~--------~~~i~sl~~sp~g~~llags~ 702 (837)
.. .........|.++....++...+ |.. +-|.+++..++........ ...|.++....++. |.+|+.
T Consensus 223 ~~-~~~~l~~~~i~~i~~d~~g~lWi--gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~ 297 (758)
T 3ott_A 223 IK-QTEAFHNNSIKSLALDGNGDLLA--GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTD 297 (758)
T ss_dssp EE-EEEEEEEEEEEEEEECTTCCEEE--EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEES
T ss_pred EE-eccCCCCCeEEEEEEcCCCCEEE--EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeC
Confidence 21 11111234688888887765333 443 4588898876654332211 23477777776655 555666
Q ss_pred CCeEEEEECCCCeEEEEEc-----CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEee-------cCCCc
Q 003236 703 ENYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-------CTGNK 770 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~-----~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~-------~~~~~ 770 (837)
.| +.++............ .....|.++..+.+|.+.+...+ -+..++..++.... +..+. .....
T Consensus 298 ~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 374 (758)
T 3ott_A 298 YG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHD-AIWYRMGDKTYPLSHNR 374 (758)
T ss_dssp SS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCC-CEEECTTCSSSCCSCSC
T ss_pred Cc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccce-eEEeccCCcCCCCCCCc
Confidence 56 5555432211111111 12346899998888887776544 46667655432111 11111 12345
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEEec--c-----CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--A-----HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~l~--~-----h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
|.++.-..++. |.+|+ ++-|..||..+++...+. . ....|.++....++.+.+ |+..+-|.++
T Consensus 375 v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~ 444 (758)
T 3ott_A 375 IRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVV 444 (758)
T ss_dssp EEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred eEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEE
Confidence 88888888876 55566 567999999888765332 1 234588888777776554 5554445554
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.80 E-value=0.0023 Score=67.63 Aligned_cols=228 Identities=9% Similarity=0.055 Sum_probs=117.9
Q ss_pred CCCEEEEEE-CC-----CcEEEEeCCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCC--
Q 003236 566 DGKLLATGG-HD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD-- 630 (837)
Q Consensus 566 dg~~Lasgs-~D-----g~I~VWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~-- 630 (837)
++.+++.|+ .+ ..+.+||..+.+-... +.........+. .++.+++.|+.+ ..+.+||+.+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666666 32 3688999887654432 111111122222 256777777755 468999998766
Q ss_pred -ceeEE-eeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEE
Q 003236 631 -YSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 701 (837)
Q Consensus 631 -~~~~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags 701 (837)
..... +.........+.+ + +.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 32221 1111111222222 3 4566677643 3688999988765443332221 122222 2556666666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCC
Q 003236 702 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 768 (837)
Q Consensus 702 ~d-----g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~ 768 (837)
.+ ..+.+||+.+.+-... +........++.+ ++++++.|+ + ..|.+||+.+.. ...+..+....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCcc
Confidence 54 4689999987643322 1111111222222 566666665 3 368999998752 12221121111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEE
Q 003236 769 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLT 804 (837)
Q Consensus 769 ~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~ 804 (837)
.....+.+ ++..++.|+.+ ..|.+||+.+.+...
T Consensus 245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 11222222 56666666654 368899998876553
No 310
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.78 E-value=0.0098 Score=64.98 Aligned_cols=226 Identities=12% Similarity=0.067 Sum_probs=129.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe---eccccceEEEEEcCC---CCeEEEEEeC---C----C
Q 003236 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----S 663 (837)
Q Consensus 597 ~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~---~~h~~~V~sl~fspd---g~~llasgs~---D----g 663 (837)
-.....++|.|+++ |+++..+|.|+++|.. +...+..+ .........|+|+|+ +..++++... + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999987 5555667999999743 32222221 112356889999997 5556655442 3 5
Q ss_pred cEEEEECCCC--e---e--e-eEEec--CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC------
Q 003236 664 EIRYWSINNG--S---C--A-GVFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ------ 714 (837)
Q Consensus 664 ~I~vwDl~t~--~---~--i-~~~~~--~~~i~sl~~sp~g~~llags~-------------dg~I~iwDl~s~------ 714 (837)
.|..|+.... . . + ..+.. ......+.|.|++..+++.+. .+.|..++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6888887654 1 1 1 11221 123467999999876665432 246666666432
Q ss_pred ---eEEEEEcCCCCCEEEEEEcC-CCCEEEEEe--CC--eEEEEEcCCCCC---------------ceeEEEeecCCCce
Q 003236 715 ---VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKF 771 (837)
Q Consensus 715 ---~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs--Dg--~I~IwDl~s~~~---------------~~~i~~~~~~~~~I 771 (837)
..+.. .++. ....++|+| ++.++++-. +. .|.+.. .+.. ...+..+.......
T Consensus 186 f~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 186 FPNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp STTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 11221 2333 345799999 677666544 22 344432 2210 01222221223456
Q ss_pred EEEEEe-------CCCCEEEEEEcCCeEEEEECCCC-cEE---Eec-cCCCCeeEEEEeCCCCEEEEEE
Q 003236 772 HSCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 772 ~sv~fs-------pdg~~L~sgs~dg~I~IwDl~s~-~~~---~l~-~h~~~V~sla~spdg~~LaSgs 828 (837)
..++|. .++.++++.-..+.|..+++... +.. .+. .....+..|++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 778883 45654444444568888888753 332 222 2245789999999998777664
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.76 E-value=0.0059 Score=66.70 Aligned_cols=232 Identities=9% Similarity=0.065 Sum_probs=127.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-eeE----EeeccccceEEEEEcCC---CCeEEEEEeC-------C
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N 662 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-~~~----~~~~h~~~V~sl~fspd---g~~llasgs~-------D 662 (837)
.....|+|.|+++.|+++...|.|++++...... .+. .+.........|+|+|+ +..++++-.. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 4568999999998455556789999998542110 011 11112345689999996 5555555432 2
Q ss_pred CcEEEEECCCC--e--eee-EEec-------CCCeeEEEEecCCCEEEEEEcC--------------CeEEEEECCCC--
Q 003236 663 SEIRYWSINNG--S--CAG-VFKC-------QSGATQMRFQPRLGRILAAAIE--------------NYISILDVETQ-- 714 (837)
Q Consensus 663 g~I~vwDl~t~--~--~i~-~~~~-------~~~i~sl~~sp~g~~llags~d--------------g~I~iwDl~s~-- 714 (837)
..|..|++... . ... .+.. ......+.|.|++. |+++..+ +.|.-+|....
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35777776543 1 111 1111 11245799999985 4444433 46777776532
Q ss_pred ------------eEEEEEcCCCCCEEEEEEcC-CCCEEEEEe--CCeEEEEEcCCCCC----------------------
Q 003236 715 ------------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK---------------------- 757 (837)
Q Consensus 715 ------------~~~~~l~~h~~~V~sl~~sp-dg~~Lasgs--Dg~I~IwDl~s~~~---------------------- 757 (837)
..+.. .+| .....++|+| ++.++++-. ++.=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 11111 123 3467899999 566555433 22222322222111
Q ss_pred ------ceeEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCeEEEEECCCCcEE---Eec-cCCCCeeEEEEeCC
Q 003236 758 ------GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTV 820 (837)
Q Consensus 758 ------~~~i~~~~~~~~~I~sv~fsp-------dg~~L~sgs~dg~I~IwDl~s~~~~---~l~-~h~~~V~sla~spd 820 (837)
...+..+. +......++|.. ++.++++.-..+.|..+++..++.. .+. .....+..|++.||
T Consensus 255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 01111121 123466777764 3555554445668888888766544 222 23457999999999
Q ss_pred CCEEEEEE-CCCcE
Q 003236 821 NGMVASAS-HDKCV 833 (837)
Q Consensus 821 g~~LaSgs-~DG~I 833 (837)
|.++++.. .+|.|
T Consensus 334 G~lyv~td~~~g~I 347 (353)
T 2g8s_A 334 GYLYVLTDESSGEL 347 (353)
T ss_dssp SCEEEEECSTTEEE
T ss_pred CcEEEEEeCCCCEE
Confidence 98766543 45554
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.72 E-value=0.034 Score=61.53 Aligned_cols=234 Identities=13% Similarity=0.175 Sum_probs=156.1
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecc
Q 003236 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH 639 (837)
Q Consensus 560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h 639 (837)
+.-.+|..+.||.-. ..++.|||+++...+..+.-. ..|..=.|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence 355677777777765 679999999999888887644 45666667644 3455443 5689999998766777777776
Q ss_pred c----cceEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeeEEecCCCeeE-EEEecCC----CEEEEEE-c-
Q 003236 640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQSGATQ-MRFQPRL----GRILAAA-I- 702 (837)
Q Consensus 640 ~----~~V~sl~fspdg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~~i~s-l~~sp~g----~~llags-~- 702 (837)
. ..|.....+++.+.++++|- -.|.+.+|..+.+.. ..+.. ...+ ..+-.+| ..+++-. .
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieG--haa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEG--HAASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECC--SEEEEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhee--eeeeeEEEecCCCCCCceEEEEEEec
Confidence 4 46777788899888887663 246788888875432 22221 1111 1111111 1233322 2
Q ss_pred --CCeEEEEECCCC--------eEEEE-EcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecC
Q 003236 703 --ENYISILDVETQ--------VCRLK-LQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 703 --dg~I~iwDl~s~--------~~~~~-l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
.+.+.|.++... +.... +.. -.+-..++..++.-.+++..+ -|.|++||+.++ .++..-...
T Consensus 223 ~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs 299 (494)
T 1bpo_A 223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRIS 299 (494)
T ss_dssp TTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECC
T ss_pred CCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeeccc
Confidence 278999988542 11111 111 234556788888777777777 999999999999 788887777
Q ss_pred CCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 768 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
...|...+.+....-+++....|.|.-..+++..++
T Consensus 300 ~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 300 GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred CCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 888877777777777888888888877777666544
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.70 E-value=0.007 Score=66.08 Aligned_cols=226 Identities=13% Similarity=0.081 Sum_probs=124.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe-------ccCCCCeEEEEEcCC---CCEEEEEeC--------C
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSSA--------D 618 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l-------~~h~~~I~~l~fspd---g~~Latgs~--------D 618 (837)
.-..|+|.|||+.|+++...|.|++++.. +.....+ .........|+|+|+ +..|+++.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 46799999999834455678999999853 3322111 122345789999996 555555432 2
Q ss_pred CeEEEEEcCCCCce---eE-Eeec------cccceEEEEEcCCCCeEEEEEeC-------------CCcEEEEECCCCe-
Q 003236 619 RTVRVWDTENPDYS---LR-TFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS- 674 (837)
Q Consensus 619 g~I~IWDl~~~~~~---~~-~~~~------h~~~V~sl~fspdg~~llasgs~-------------Dg~I~vwDl~t~~- 674 (837)
..|..|++...... .. .+.. .......|+|.|+|. |+++.+. .|.|.-++....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 35666776543111 11 1111 112245799999985 4444432 2467777765320
Q ss_pred -----------eeeEEe-cCCCeeEEEEecCCCEEEEEEcCC----eEEEEECCC-------------------------
Q 003236 675 -----------CAGVFK-CQSGATQMRFQPRLGRILAAAIEN----YISILDVET------------------------- 713 (837)
Q Consensus 675 -----------~i~~~~-~~~~i~sl~~sp~g~~llags~dg----~I~iwDl~s------------------------- 713 (837)
....+. .......++|.+..+.|+++.... .|.+.....
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 122222 234477899999656676665532 232221100
Q ss_pred ----CeEEEEEcCCCCCEEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCC
Q 003236 714 ----QVCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 781 (837)
Q Consensus 714 ----~~~~~~l~~h~~~V~sl~~sp-------dg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~ 781 (837)
..++..+. +...+..++|.. ++.++++.. .+.|...++..+........+......+..+++.|||.
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 01122222 234567788864 456666554 77888888875421111111223345789999999998
Q ss_pred EEEE
Q 003236 782 SLLV 785 (837)
Q Consensus 782 ~L~s 785 (837)
.+++
T Consensus 336 lyv~ 339 (353)
T 2g8s_A 336 LYVL 339 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.70 E-value=0.11 Score=57.62 Aligned_cols=248 Identities=9% Similarity=0.145 Sum_probs=152.1
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeE
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
+..|.|.|+.+...+.+-.- .--+.-.+|..+.||.-. ..++.|||+++.. .++.+.-. ..|.-=.|-.+.. +
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~-klks~~~~-e~VvfWkWis~~~-l 119 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKS-KMKAHTMT-DDVTFWKWISLNT-V 119 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTE-EEEEEECS-SCCCEEEEEETTE-E
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhh-hhcceecC-CCceEEEecCCCe-E
Confidence 34788899887544322111 112344677777777665 7799999999854 35555533 3455556654432 3
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEEec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 003236 656 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t-~~~i~~~~~-----~~~i~sl~~sp~g~~llags~-------dg~I~iwDl~s~~~~~~l~~ 722 (837)
. ..+ +..|+-|++.. ..+++.|.. ...|.....+++.++++..+- .|.+.+|..+.+. -..+.+
T Consensus 120 ~-lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 196 (494)
T 1bpo_A 120 A-LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (494)
T ss_dssp E-EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred E-EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence 3 332 67899999974 356666654 344777888899998776553 3678899988653 345667
Q ss_pred CCCCEEEEEEcCCC---CEEEEEe----CCeEEEEEcCCCC---C---ceeEEEeec---CCCceEEEEEeCCCCEEEEE
Q 003236 723 HKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGS---K---GECIHELSC---TGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 723 h~~~V~sl~~spdg---~~Lasgs----Dg~I~IwDl~s~~---~---~~~i~~~~~---~~~~I~sv~fspdg~~L~sg 786 (837)
|......+.+..+. .+++.+. .+.++|.++.... . .+.+..+-. ...-..++.+++....++..
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence 76555444433211 2444444 2689999996541 0 111111111 13345678899999999999
Q ss_pred EcCCeEEEEECCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 787 GCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 787 s~dg~I~IwDl~s~~~~~-l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
+..|.|++||+.++.++. -.-....|..-+-+....=++.....|.|
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence 999999999999999883 33344555555544444434444455554
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.68 E-value=0.029 Score=60.95 Aligned_cols=232 Identities=12% Similarity=0.090 Sum_probs=131.1
Q ss_pred eccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eEEe----eccccceEEEEEcCC---CCeEEEEE--eCC
Q 003236 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DNN 662 (837)
Q Consensus 593 l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~-~~~~----~~h~~~V~sl~fspd---g~~llasg--s~D 662 (837)
+...-...+.|+|.|+|.++++--..|.|++++..++... +..+ .........|+|+|+ +..++++- ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3334456789999999987776655899999987654421 1111 223456789999995 34444432 245
Q ss_pred CcEEEEECCCC----------eeee-EEec--CCCeeEEEEecCCCEEEEEEc-------------CCeEEEEECCCC--
Q 003236 663 SEIRYWSINNG----------SCAG-VFKC--QSGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-- 714 (837)
Q Consensus 663 g~I~vwDl~t~----------~~i~-~~~~--~~~i~sl~~sp~g~~llags~-------------dg~I~iwDl~s~-- 714 (837)
+.|.-|.+..+ +.+. .+.. ......+.|.|++..+++.+. .|.|.-++....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 56777766542 1111 1111 223457999999876666542 356666665532
Q ss_pred -------eEEEEEcCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---------------ceeEEEeecCCCc
Q 003236 715 -------VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGNK 770 (837)
Q Consensus 715 -------~~~~~l~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~~~---------------~~~i~~~~~~~~~ 770 (837)
..+.. .+|. ....++|+|+|.++++-. |+.-.|.-+..+.. ...+..+..+...
T Consensus 187 ~~nPf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a 264 (347)
T 3das_A 187 PGNPFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS 264 (347)
T ss_dssp TTCSSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred CCCCCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence 11221 2443 355799999988777654 44333333333211 0112222222234
Q ss_pred eEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcE----E-EeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 771 FHSCVFHPTFPSLLVIGC-YETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~----~-~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
...++|.. +. ++.+.. .+.|..+.+..... . .+.+....+.+|+..|||.++++.+
T Consensus 265 p~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 265 PSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 56677763 43 444444 44676666655432 1 2333456899999999998777654
No 316
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.65 E-value=0.047 Score=68.81 Aligned_cols=272 Identities=12% Similarity=0.080 Sum_probs=147.6
Q ss_pred CCCeEEEEEcCC------CCEEEEEEC-CCcEEEEeCCCCeEEEEecc-CCCCeEEEEEc--CCCCEEEEEeCCCeEEEE
Q 003236 555 TSKVESCHFSPD------GKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVRFS--PSLSRLATSSADRTVRVW 624 (837)
Q Consensus 555 ~~~V~sl~fSpd------g~~Lasgs~-Dg~I~VWd~~t~~~~~~l~~-h~~~I~~l~fs--pdg~~Latgs~Dg~I~IW 624 (837)
...|.|+++.+. +.++|+|.. |++|+|+++.+.+.+....- ......++.+. ....+|..|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 369999997 99999999998776644321 11233444333 234578899999998776
Q ss_pred EcCC--CCcee--EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCee-EEEEecC--CCEE
Q 003236 625 DTEN--PDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGAT-QMRFQPR--LGRI 697 (837)
Q Consensus 625 Dl~~--~~~~~--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i~-sl~~sp~--g~~l 697 (837)
.++. +...- ..+.| ..++.-..|...+..-+++++ +....+|.-. ++....--....+. ...|+.. .+-+
T Consensus 633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEE
T ss_pred EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcE
Confidence 6653 32211 12333 345544444444443443444 3444444433 33221111112232 3334332 1234
Q ss_pred EEEEcCCeEEEEECCCC--eEEEEEcCCCCCEEEEEEcCCCCEEEEEe-C------------------------------
Q 003236 698 LAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D------------------------------ 744 (837)
Q Consensus 698 lags~dg~I~iwDl~s~--~~~~~l~~h~~~V~sl~~spdg~~Lasgs-D------------------------------ 744 (837)
+. ..++.++|..+.+- -.+.++. -...+..++++|+.+.++++. +
T Consensus 710 v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1158)
T 3ei3_A 710 AL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK 787 (1158)
T ss_dssp EE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred EE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence 43 34556888776532 2333333 345677888888766544432 1
Q ss_pred -------------------CeEEEEEcCCCCCceeEEEeecCC-CceEEEE---EeCC-CCEEEEEE----------cCC
Q 003236 745 -------------------ELVRVWSIGSGSKGECIHELSCTG-NKFHSCV---FHPT-FPSLLVIG----------CYE 790 (837)
Q Consensus 745 -------------------g~I~IwDl~s~~~~~~i~~~~~~~-~~I~sv~---fspd-g~~L~sgs----------~dg 790 (837)
..|+++|-.+. +.+..+.-.. ..+.+++ |..+ ..+|++|+ ..|
T Consensus 788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~G 864 (1158)
T 3ei3_A 788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQG 864 (1158)
T ss_dssp CC----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCE
T ss_pred cccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCce
Confidence 13555555444 3333333222 2234443 3322 46788887 246
Q ss_pred eEEEEECCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003236 791 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 837 (837)
Q Consensus 791 ~I~IwDl~s~~~~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IWd 837 (837)
.|++|++.++++. .....+++|++++-- +|++||+. ..+|+||+
T Consensus 865 ri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~ 910 (1158)
T 3ei3_A 865 RIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE 910 (1158)
T ss_dssp EEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred EEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence 8999998765544 333557889998854 35444433 46788875
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.61 E-value=0.011 Score=62.40 Aligned_cols=227 Identities=8% Similarity=0.021 Sum_probs=116.6
Q ss_pred CEEEEEEC--CCcEEEEeCCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCCceeEEeecc
Q 003236 568 KLLATGGH--DKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGH 639 (837)
Q Consensus 568 ~~Lasgs~--Dg~I~VWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D----g~I~IWDl~~~~~~~~~~~~h 639 (837)
.+++.|+. ...+.+||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||+.+.......-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35556654 35789999887654422 1111112222222 56677777755 678899998765422211111
Q ss_pred ccceEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEc---------
Q 003236 640 STTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI--------- 702 (837)
Q Consensus 640 ~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags~--------- 702 (837)
...-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-..... -.+++. .++..++.|+.
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence 1111122222 34566677654 4689999988764443222111 122222 24555555553
Q ss_pred CCeEEEEECCCCeEEEEEcC-CCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEE
Q 003236 703 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCV 775 (837)
Q Consensus 703 dg~I~iwDl~s~~~~~~l~~-h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~ 775 (837)
...+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ + ..|.+||+.+.. ...+..+.........+.
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEE
T ss_pred cceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEE
Confidence 34588999988743322111 11111122222 566666655 2 368999988752 112211211112222233
Q ss_pred EeCCCCEEEEEEcC-----CeEEEEECCCCcEE
Q 003236 776 FHPTFPSLLVIGCY-----ETLELWNMTENKTL 803 (837)
Q Consensus 776 fspdg~~L~sgs~d-----g~I~IwDl~s~~~~ 803 (837)
+ ++..+++|+.+ ..|.+||+.+.+..
T Consensus 246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 276 (306)
T 3ii7_A 246 V--GSIVYVLAGFQGVGRLGHILEYNTETDKWV 276 (306)
T ss_dssp E--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred E--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence 3 56666777644 47899999887755
No 318
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.61 E-value=0.0001 Score=88.37 Aligned_cols=214 Identities=8% Similarity=0.019 Sum_probs=128.5
Q ss_pred CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC----CeeeeEEec-CCCeeEEEEe
Q 003236 617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFKC-QSGATQMRFQ 691 (837)
Q Consensus 617 ~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t----~~~i~~~~~-~~~i~sl~~s 691 (837)
..+.|++.++..... ..+......+..|+|++.+..++++-...+.|+.+++.. ......+.. ......+++.
T Consensus 384 ~~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 345788888876543 222223345778999988777777766678999999875 222222211 1235567888
Q ss_pred cCCCEEEEEE-cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeEEEeecC
Q 003236 692 PRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCT 767 (837)
Q Consensus 692 p~g~~llags-~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i~~~~~~ 767 (837)
+.++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+. . +.|.++++..... .. .+...
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~--l~~~~ 538 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YS--LVTEN 538 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CE--ESCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eE--EEeCC
Confidence 6666666554 457899999886654444433334567889999766555544 3 6788877754321 11 11122
Q ss_pred CCceEEEEEeCCCCEEEEEEc-CCeEEEEECCCCcEEEecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 768 GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs~-dg~I~IwDl~s~~~~~l~~---h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
......++|++++..|+++.. .+.|.++++.......+.. .......|++..+ .++++....+.|..+
T Consensus 539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~ 610 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA 610 (699)
T ss_dssp CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence 344567999998777777765 4589999997654443322 2233456666543 344444455666654
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.53 E-value=0.0081 Score=63.41 Aligned_cols=229 Identities=10% Similarity=0.043 Sum_probs=115.2
Q ss_pred CCEEEEEECC----CcEEEEeCCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCceeEE
Q 003236 567 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT 635 (837)
Q Consensus 567 g~~Lasgs~D----g~I~VWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~D-----g~I~IWDl~~~~~~~~~ 635 (837)
+.+++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+.......
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 4455556543 3588899887654332 1111111122222 56677777754 35888998876532211
Q ss_pred eeccccceEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEEc------
Q 003236 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAAI------ 702 (837)
Q Consensus 636 ~~~h~~~V~sl~fspdg~~llasgs~Dg-----~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags~------ 702 (837)
-......-.+++.. + +.+++.|+.++ .+.+||+.+.+-...-..... -.+++. .++..++.|+.
T Consensus 94 ~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL-N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCSSCCBSCEEEEE-T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTE
T ss_pred CCCccccceEEEEE-C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCc
Confidence 11111111222222 3 45666666543 578899887764443222111 122222 24455555554
Q ss_pred -CCeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 703 -ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 703 -dg~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
...+.+||+.+.+-... +.........+.+ ++++++.|+ + ..+.+||+.+.. ...+......... ..
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~-~~ 246 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA-WRQVADMNMCRRN-AG 246 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE-EEEECCCSSCCBS-CE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC-EeeCCCCCCcccc-Ce
Confidence 24588999987643322 2111111222222 566666665 3 368999987752 1122111111111 12
Q ss_pred EEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEe
Q 003236 774 CVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTL 805 (837)
Q Consensus 774 v~fspdg~~L~sgs~dg-----~I~IwDl~s~~~~~l 805 (837)
++. -++..+++|+.++ .|.+||+.+.+...+
T Consensus 247 ~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 247 VCA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp EEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred EEE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 222 2566666666553 589999998876654
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.49 E-value=0.055 Score=58.74 Aligned_cols=237 Identities=8% Similarity=0.052 Sum_probs=126.5
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE--EEe----ccCCCCeEEEEEcCC---CCEEEEE---
Q 003236 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS--- 615 (837)
Q Consensus 548 ~~~l~~H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l----~~h~~~I~~l~fspd---g~~Latg--- 615 (837)
+.++-..-..-+.|+|.|||++|++--..|.|++++..+++.. ..+ .........|+|+|+ +.+|++.
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3344444556789999999997776654899999986655442 222 123566899999995 4445443
Q ss_pred eCCCeEEEEEcCCCC---------c-eeEEee-ccccceEEEEEcCCCCeEEEEEe------------CCCcEEEEECCC
Q 003236 616 SADRTVRVWDTENPD---------Y-SLRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINN 672 (837)
Q Consensus 616 s~Dg~I~IWDl~~~~---------~-~~~~~~-~h~~~V~sl~fspdg~~llasgs------------~Dg~I~vwDl~t 672 (837)
..++.|.-|.+.... . .+..+. ........|.|.|+|..++.+|+ ..|.|.-++...
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 245567667665411 1 111121 11123467999999864443332 135555555542
Q ss_pred Ce-------eeeEEe-cCCCeeEEEEecCCCEEEEEEc--CC--eEEEEECC--------CC--------eEEEEEcCCC
Q 003236 673 GS-------CAGVFK-CQSGATQMRFQPRLGRILAAAI--EN--YISILDVE--------TQ--------VCRLKLQGHK 724 (837)
Q Consensus 673 ~~-------~i~~~~-~~~~i~sl~~sp~g~~llags~--dg--~I~iwDl~--------s~--------~~~~~l~~h~ 724 (837)
.- ....+. .......++|+|++. |+++.. ++ .|.+.... .+ .++..+..+.
T Consensus 184 ~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~ 262 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE 262 (347)
T ss_dssp SBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred CccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence 20 011222 233467899999754 444443 22 23332110 00 1122332222
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-ceeEEEeecCCCceEEEEEeCCCCEEEEE
Q 003236 725 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~-~~~i~~~~~~~~~I~sv~fspdg~~L~sg 786 (837)
.....++|. ++.+++..- ...|....+..... .+....+......+..++..|||..+++.
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 356677776 455555444 55666666654321 11222333344678899999998644443
No 321
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.46 E-value=0.13 Score=55.90 Aligned_cols=201 Identities=13% Similarity=0.123 Sum_probs=120.5
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEE------------ECCCcEEEEeCCC--CeEE-EEecc-----CCCCeEEEEEcC-
Q 003236 549 QLIPASTSKVESCHFSPDGKLLATG------------GHDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP- 607 (837)
Q Consensus 549 ~~l~~H~~~V~sl~fSpdg~~Lasg------------s~Dg~I~VWd~~t--~~~~-~~l~~-----h~~~I~~l~fsp- 607 (837)
..+++-......+++.++|..++++ ..+|.|.++|.++ .+.. ..+.+ ..-....|.+.+
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d 122 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence 3344423345667788887554444 1689999999873 2322 12222 223567777765
Q ss_pred -CCC-EEEEEeC---CCeEEEEEcCCCCcee---EEeecc-ccceEEEEEcCCCCeEEEEEe-----------------C
Q 003236 608 -SLS-RLATSSA---DRTVRVWDTENPDYSL---RTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------N 661 (837)
Q Consensus 608 -dg~-~Latgs~---Dg~I~IWDl~~~~~~~---~~~~~h-~~~V~sl~fspdg~~llasgs-----------------~ 661 (837)
++. +|+++.. +.+|.+|+++...... ..+.+. -...+.+.+.++|. ++++.. .
T Consensus 123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~ 201 (355)
T 3sre_A 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLA 201 (355)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCC
T ss_pred CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCC
Confidence 354 4555432 5688888887643322 223222 24578999999876 444543 1
Q ss_pred CCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-CCeEEEEECCC-Ce--EEEEEcCCCCCEEEEEEcC-CC
Q 003236 662 NSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-ENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SG 736 (837)
Q Consensus 662 Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-dg~I~iwDl~s-~~--~~~~l~~h~~~V~sl~~sp-dg 736 (837)
.|.|+.+|. +++......-...+.++|+|+++.++++.. .+.|..||+.. +. ....+ ........+++++ +|
T Consensus 202 ~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G 278 (355)
T 3sre_A 202 WSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG 278 (355)
T ss_dssp CEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC
T ss_pred ccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC
Confidence 245655655 343333444456789999999999888875 58999999863 32 22233 2346678899999 59
Q ss_pred CEEEEEe-CC-eEEEEEcC
Q 003236 737 EYLASVS-DE-LVRVWSIG 753 (837)
Q Consensus 737 ~~Lasgs-Dg-~I~IwDl~ 753 (837)
.+.+++. ++ .|..|+..
T Consensus 279 ~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 279 DLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp CEEEEEESCHHHHHSCCTT
T ss_pred cEEEEecCCceEEEEECCC
Confidence 9888775 43 45545443
No 322
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.35 E-value=0.022 Score=64.68 Aligned_cols=257 Identities=12% Similarity=0.095 Sum_probs=150.8
Q ss_pred EEEEECCCcEEEEeCCCCeEEEEeccCC-------------------------CCeE--EEEEcC---CCCEEEEEeC-C
Q 003236 570 LATGGHDKKAVLWCTESFTVKSTLEEHT-------------------------QWIT--DVRFSP---SLSRLATSSA-D 618 (837)
Q Consensus 570 Lasgs~Dg~I~VWd~~t~~~~~~l~~h~-------------------------~~I~--~l~fsp---dg~~Latgs~-D 618 (837)
|.+|+..|.|+|+-+.+++.+..+...+ +... .+.+.. ||++|+.-.. .
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 6788899999999999999888764211 1111 233322 5777777664 5
Q ss_pred CeEEEEEcCCCCceeEEeeccccceEEEEEc--CCCCeEEEEEe------CCCcE------------EEEECCCCeeeeE
Q 003236 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEI------------RYWSINNGSCAGV 678 (837)
Q Consensus 619 g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fs--pdg~~llasgs------~Dg~I------------~vwDl~t~~~i~~ 678 (837)
..|-..+++.-+............+.++.|- |+..++++.+- .||.. ...|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6777777776543222233345678888886 56565554431 22221 1123444444444
Q ss_pred EecCCCeeEEEEecCCCEEEEEEcCC---------------eEEEEECCC-------C--e-----EEEEEcC-------
Q 003236 679 FKCQSGATQMRFQPRLGRILAAAIEN---------------YISILDVET-------Q--V-----CRLKLQG------- 722 (837)
Q Consensus 679 ~~~~~~i~sl~~sp~g~~llags~dg---------------~I~iwDl~s-------~--~-----~~~~l~~------- 722 (837)
+........+...+++++.++.+.+. .+.++++.. + + -+..+.+
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 44445555666677788877776532 355555421 0 0 0111211
Q ss_pred --------CCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcCCC---------CCceeEEEeecCCCceEEEEEeCCCCEE
Q 003236 723 --------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL 783 (837)
Q Consensus 723 --------h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~s~---------~~~~~i~~~~~~~~~I~sv~fspdg~~L 783 (837)
-....+.+.++|||+++++++ +.++.|+|++.. ....++..-...+-.....+|.++| ..
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~a 391 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NA 391 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EE
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ce
Confidence 223456788999999999988 889999999741 1112223222345667788999999 44
Q ss_pred EEEE-cCCeEEEEECCCC----------cEE-EeccCCCCeeEEEE------eCCCCEEEEEE
Q 003236 784 LVIG-CYETLELWNMTEN----------KTL-TLSAHDKLVSSLAA------STVNGMVASAS 828 (837)
Q Consensus 784 ~sgs-~dg~I~IwDl~s~----------~~~-~l~~h~~~V~sla~------spdg~~LaSgs 828 (837)
++.- -|..|..|++... .++ ++.-|-. +-.+.- .+||++|++.+
T Consensus 392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence 4444 6889999998643 233 4444433 223322 47888888875
No 323
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.31 E-value=0.01 Score=62.53 Aligned_cols=215 Identities=13% Similarity=0.088 Sum_probs=106.3
Q ss_pred CCCEEEEEe-CC-----CeEEEEEcCCCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCe-
Q 003236 608 SLSRLATSS-AD-----RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS- 674 (837)
Q Consensus 608 dg~~Latgs-~D-----g~I~IWDl~~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~- 674 (837)
++.+++.|+ .+ ..+.+||+.+....... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence 344555555 22 36888888875532211 1111111122222 24567677654 468999998766
Q ss_pred --eeeEEecCC--CeeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEE--EEEcCCCCCEEEEEEcCCCCEEEEEe
Q 003236 675 --CAGVFKCQS--GATQMRFQPRLGRILAAAIE-----NYISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 675 --~i~~~~~~~--~i~sl~~sp~g~~llags~d-----g~I~iwDl~s~~~~--~~l~~h~~~V~sl~~spdg~~Lasgs 743 (837)
-...-.... .-.+++. .++..++.|+.+ ..+.+||+.+.+-. ..+........++.+ ++++++.|+
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred CeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 332222111 1122222 245556666543 46899998876433 222211112222222 566666665
Q ss_pred -C-----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCC-CC
Q 003236 744 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD-KL 811 (837)
Q Consensus 744 -D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~-~~ 811 (837)
+ ..+.+||+.+.. ...+..+...... .+++. -++..+++|+.+ ..|.+||+.+.+...+.... ..
T Consensus 168 ~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGH-WTNVTPMATKRSG-AGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTE-EEEECCCSSCCBS-CEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCc-EEeCCCCCccccc-ceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence 3 368999987752 1222111111111 12222 255566666654 47999999988776543211 11
Q ss_pred eeEEEEeCCCCEEEEEECCC
Q 003236 812 VSSLAASTVNGMVASASHDK 831 (837)
Q Consensus 812 V~sla~spdg~~LaSgs~DG 831 (837)
....+..-++++++.|+.++
T Consensus 245 ~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp BSCEEEEETTEEEEECCBCS
T ss_pred cceeEEEECCEEEEEcCcCC
Confidence 11112223677777877653
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.29 E-value=0.011 Score=62.75 Aligned_cols=230 Identities=7% Similarity=0.006 Sum_probs=116.2
Q ss_pred CCCCEEEEEECC----CcEEEEeCCCCeEEEEe--ccCCCCeEEEEEcCCCCEEEEEeC----C-----CeEEEEEcCCC
Q 003236 565 PDGKLLATGGHD----KKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTENP 629 (837)
Q Consensus 565 pdg~~Lasgs~D----g~I~VWd~~t~~~~~~l--~~h~~~I~~l~fspdg~~Latgs~----D-----g~I~IWDl~~~ 629 (837)
-++.+++.|+.+ ..+.+||..+.+-...- .........+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356677777632 36889998876544321 111111122222 5667777765 2 46888998875
Q ss_pred CceeEE-eeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeeEEecCCC--eeEEEEecCCCEEEEEE
Q 003236 630 DYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKCQSG--ATQMRFQPRLGRILAAA 701 (837)
Q Consensus 630 ~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~~~~~--i~sl~~sp~g~~llags 701 (837)
...... +.........+.+ + +.+++.|+.+ ..+.+||+.+.+-...-..... -.+++.. ++..++.|+
T Consensus 101 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 101 QWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp EEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred eEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence 532211 1111111222222 3 4566666533 4688999987764433222111 1122222 555566666
Q ss_pred cC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCC
Q 003236 702 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG 768 (837)
Q Consensus 702 ~d-----g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~ 768 (837)
.+ +.+.+||+.+.+-... +........++.+ ++++++.|+ + ..+.+||+.+.. ...+..+....
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHRR 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSCC
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCCc
Confidence 54 4689999987643321 1111111222233 566666665 3 469999988752 11111111111
Q ss_pred CceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEe
Q 003236 769 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL 805 (837)
Q Consensus 769 ~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l 805 (837)
.. .+++.. ++..++.|+.+ ..|.+||+.+.+...+
T Consensus 254 ~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 254 SA-LGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp BS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred cc-eEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 11 222222 55666666643 3688999988776543
No 325
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.29 E-value=0.029 Score=59.55 Aligned_cols=228 Identities=8% Similarity=-0.016 Sum_probs=114.6
Q ss_pred EEEEEECCCcEEEEeCCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeC-----C------CeEEEEEcCCCCceeEEe
Q 003236 569 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA-----D------RTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~-----D------g~I~IWDl~~~~~~~~~~ 636 (837)
+++.|+ ..+.+||..+.+-.. .+..........+...++.+++.|+. . ..+.+||..+.......-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344555 579999998876543 22212223333334457788888874 1 137788888755321110
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCC--------CcEEEEECCCCeeeeEEecCCC-eeEEEEecCCCEEEEEEc-C---
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFKCQSG-ATQMRFQPRLGRILAAAI-E--- 703 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~D--------g~I~vwDl~t~~~i~~~~~~~~-i~sl~~sp~g~~llags~-d--- 703 (837)
......-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-..... ....+...++..++.|+. +
T Consensus 85 ~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 85 LPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRK 162 (315)
T ss_dssp BSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSC
T ss_pred CCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCc
Confidence 1111111122222 34566666632 4689999988754332222111 111222234556666665 2
Q ss_pred --CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 704 --NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 704 --g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-Dg-----~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
+.+.+||+.+.+-... +........++.+ ++++++.|+ ++ .+.+||+.+.. ...+......... .+
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~ 238 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERSS-LS 238 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCBS-CE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCcccc-ee
Confidence 4799999987643221 1111111122222 566666665 43 58889987751 1222111111111 22
Q ss_pred EEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEe
Q 003236 774 CVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 805 (837)
Q Consensus 774 v~fspdg~~L~sgs~d--------------g~I~IwDl~s~~~~~l 805 (837)
++.. ++..+++|+.+ ..|.+||+.+.+...+
T Consensus 239 ~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 239 LVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred EEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 2222 55666666653 2478899988876544
No 326
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.24 E-value=0.019 Score=60.55 Aligned_cols=213 Identities=9% Similarity=0.050 Sum_probs=105.0
Q ss_pred CEEEEEeCC----CeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeeEEe
Q 003236 610 SRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFK 680 (837)
Q Consensus 610 ~~Latgs~D----g~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-----g~I~vwDl~t~~~i~~~~ 680 (837)
.+++.|+.+ ..+.+||+.+..............-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-.
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 344445432 3578888876543211101111111122222 35577677644 368899998876444332
Q ss_pred cCCC--eeEEEEecCCCEEEEEEcCC-----eEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C------
Q 003236 681 CQSG--ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D------ 744 (837)
Q Consensus 681 ~~~~--i~sl~~sp~g~~llags~dg-----~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D------ 744 (837)
.... -.+++. .++..++.|+.++ .+.+||+.+.+-... +....... +++.. ++++++.|+ +
T Consensus 95 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 95 MRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGVV-GGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTTTEE
T ss_pred CCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEEE-CCEEEEEeCCCCCCCcc
Confidence 2111 122222 2556666777553 588899887653322 11111111 22222 556666554 2
Q ss_pred -CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCCCC--eeEEE
Q 003236 745 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSLA 816 (837)
Q Consensus 745 -g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~~~--V~sla 816 (837)
..+.+||+.+.. ...+..+...... .+++.. ++..+++|+.+ ..+.+||+.+.+...+...... -.+++
T Consensus 172 ~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 172 LSTVECYNATTNE-WTYIAEMSTRRSG-AGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248 (302)
T ss_dssp CCCEEEEETTTTE-EEEECCCSSCCBS-CEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccEEEEEeCCCCc-EEECCCCcccccc-ccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence 258899987652 1122112111111 222222 55666666654 3799999998876654322111 11222
Q ss_pred EeCCCCEEEEEECCC
Q 003236 817 ASTVNGMVASASHDK 831 (837)
Q Consensus 817 ~spdg~~LaSgs~DG 831 (837)
..++++++.|+.++
T Consensus 249 -~~~~~i~v~GG~~~ 262 (302)
T 2xn4_A 249 -AVNGLLYVVGGDDG 262 (302)
T ss_dssp -EETTEEEEECCBCS
T ss_pred -EECCEEEEECCcCC
Confidence 23677888887654
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.23 E-value=0.024 Score=59.80 Aligned_cols=210 Identities=10% Similarity=0.043 Sum_probs=106.5
Q ss_pred CEEEEEeC--CCeEEEEEcCCCCceeEE-eeccccceEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeeEEecC
Q 003236 610 SRLATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFKCQ 682 (837)
Q Consensus 610 ~~Latgs~--Dg~I~IWDl~~~~~~~~~-~~~h~~~V~sl~fspdg~~llasgs~D----g~I~vwDl~t~~~i~~~~~~ 682 (837)
.+++.|+. ...+.+||..+....... +.........+.+ ++.+++.|+.+ ..+.+||+.+.+-...-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 34555554 357889998876532211 1111111222222 34577777654 67899999887654433322
Q ss_pred CC--eeEEEEecCCCEEEEEEcC------CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-------
Q 003236 683 SG--ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D------- 744 (837)
Q Consensus 683 ~~--i~sl~~sp~g~~llags~d------g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D------- 744 (837)
.. -.+++ .-++..++.|+.+ ..+.+||+.+.+-... +....... +++. -++++++.|+ +
T Consensus 90 ~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 90 TPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEESCTTTCE
T ss_pred ccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECCEEEEECCCCCCCCccc
Confidence 21 11222 2255666666654 4689999988753322 11111111 2222 2556666654 2
Q ss_pred --CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCC---CCeeE
Q 003236 745 --ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSS 814 (837)
Q Consensus 745 --g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~---~~V~s 814 (837)
..+.+||+.+.. ...+..+..... -.+++.. ++..+++|+.+ ..|.+||+.+.+...+.... ....+
T Consensus 167 ~~~~~~~yd~~~~~-W~~~~~~p~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 167 VLNSCEVYDPATET-WTELCPMIEARK-NHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp ECCCEEEEETTTTE-EEEECCCSSCCB-SCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ccceEEEeCCCCCe-EEECCCccchhh-cceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 348899988752 112211111111 1222222 55566666543 36899999988766443211 11222
Q ss_pred EEEeCCCCEEEEEECC
Q 003236 815 LAASTVNGMVASASHD 830 (837)
Q Consensus 815 la~spdg~~LaSgs~D 830 (837)
+.+ ++++++.|+.+
T Consensus 244 ~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQ 257 (306)
T ss_dssp EEE--TTEEEEEECBC
T ss_pred EEE--CCEEEEEeCcC
Confidence 222 67788888755
No 328
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.17 E-value=0.00013 Score=87.95 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=2.3
Q ss_pred ccCCCCeeEEEEeC
Q 003236 806 SAHDKLVSSLAAST 819 (837)
Q Consensus 806 ~~h~~~V~sla~sp 819 (837)
..|-.-+..+.|.+
T Consensus 706 SDH~pV~a~f~l~~ 719 (727)
T 4b8c_D 706 SDHIPLLARFEFMK 719 (727)
T ss_dssp SSBCC---------
T ss_pred CCceeEEEEEEEec
Confidence 34544455555544
No 329
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.14 E-value=0.14 Score=57.78 Aligned_cols=155 Identities=12% Similarity=0.166 Sum_probs=88.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCce-eEEeec------cccceEEEEEcCC---CCeEEEEEeC------
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN------ 661 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~-~~~~~~------h~~~V~sl~fspd---g~~llasgs~------ 661 (837)
...+.|+|.|+|+++++-...+.|++++..++... +..+.. ....+..|+|+|+ +..++++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999987766544457888876544321 222211 2355779999996 5556555442
Q ss_pred ------CCcEEEEECCCC--ee---eeEE---ec--CCCeeEEEEecCCCEEEEEEcC----------------------
Q 003236 662 ------NSEIRYWSINNG--SC---AGVF---KC--QSGATQMRFQPRLGRILAAAIE---------------------- 703 (837)
Q Consensus 662 ------Dg~I~vwDl~t~--~~---i~~~---~~--~~~i~sl~~sp~g~~llags~d---------------------- 703 (837)
...|..|++..+ .. ...+ .. ......++|.|++..+++.+..
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~ 186 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQE 186 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHH
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccccccccc
Confidence 235666665432 11 1112 11 2346889999999877665431
Q ss_pred ----------CeEEEEECCCCe----------EEEEE-cCCCCCEEEEEEcCCCCEEEEEe--CCeEEEEEcC
Q 003236 704 ----------NYISILDVETQV----------CRLKL-QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIG 753 (837)
Q Consensus 704 ----------g~I~iwDl~s~~----------~~~~l-~~h~~~V~sl~~spdg~~Lasgs--Dg~I~IwDl~ 753 (837)
|.|.-++..... ....+ .+| .....++|+++|.++++-. ++.-.|.-+.
T Consensus 187 ~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 187 LNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp HHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred ccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 345555544320 11111 233 3567899999988777654 4444444443
No 330
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.13 E-value=0.11 Score=55.19 Aligned_cols=234 Identities=5% Similarity=-0.078 Sum_probs=133.9
Q ss_pred cCCCCEEEEEE--CCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCC--------------CeEEEEEcC
Q 003236 564 SPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTE 627 (837)
Q Consensus 564 Spdg~~Lasgs--~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~D--------------g~I~IWDl~ 627 (837)
+.+|.+|+... .++.|+..+.+... ...+.. +. +--+++++.+|+.+... ..|+..+++
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 34677766664 35666666655433 333321 11 33456788888877653 467777777
Q ss_pred CCCceeEEeeccccceEEEEEcCCCCeEEEEE---eCCCcEEEEECCCCeeeeEEecCCCeeEEEEecCCCEEEEEEc-C
Q 003236 628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRLGRILAAAI-E 703 (837)
Q Consensus 628 ~~~~~~~~~~~h~~~V~sl~fspdg~~llasg---s~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g~~llags~-d 703 (837)
.... ..+... .+..|+++++.++++- ..+..|+..++...... .+.... + ..++++++.|+..+. .
T Consensus 97 g~~~--~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~-~--~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGS--TVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHY-L--FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCC--EEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSC-C--CCSEEETTEEEEECTTT
T ss_pred CCcc--eEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCC-c--eEeeEECCEEEEEeCCC
Confidence 6542 222221 1235677788777665 34556777777644433 333222 2 456788888887765 5
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC
Q 003236 704 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 780 (837)
Q Consensus 704 g~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~Lasgs--D-g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg 780 (837)
..|.+.++..+.....+.+ ... ..++|++.+|+-.. + ..|..-++..... ..+. ...+ ..|+|++
T Consensus 167 ~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt--~~~~--~~~~~~g 234 (302)
T 3s25_A 167 GQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLT--EANI--EHYNVYG 234 (302)
T ss_dssp CCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECS--CSCE--EEEEEET
T ss_pred ceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEe--CCCc--ceEEECC
Confidence 7899999887765444432 222 34669999888776 3 2566666665432 1221 2223 3488889
Q ss_pred CEEEEEEc--CCeEEEEECCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003236 781 PSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 781 ~~L~sgs~--dg~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~LaSgs 828 (837)
..|+.+.. .+.|...++.......+... .+..+ ++.+.+|+-..
T Consensus 235 ~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~--~~~~i--~i~~d~Iy~td 280 (302)
T 3s25_A 235 SLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCNI--NVTSQYVYFTD 280 (302)
T ss_dssp TEEEEEECSSSCEEEEEETTSCCCEEEEES--CEEEE--EECSSEEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCccEEeeCC--ccceE--EEeCCEEEEEE
Confidence 88887643 35788888876554433322 23333 34455555444
No 331
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.09 E-value=0.00015 Score=87.51 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.4
Q ss_pred CCcEEEEeC
Q 003236 576 DKKAVLWCT 584 (837)
Q Consensus 576 Dg~I~VWd~ 584 (837)
+|...+|..
T Consensus 487 ~G~AI~y~~ 495 (727)
T 4b8c_D 487 DGCCIFFKR 495 (727)
T ss_dssp CCCEEEC--
T ss_pred ccEEEEEEc
Confidence 444555443
No 332
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.03 E-value=0.091 Score=55.72 Aligned_cols=227 Identities=8% Similarity=0.006 Sum_probs=111.1
Q ss_pred EEEEEECCCcEEEEeCCCCeEEE-EeccCCCCeEEEEEcCCCCEEEEEeC----CC-------eEEEEEcCCCCceeEEe
Q 003236 569 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLRTF 636 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~~~-~l~~h~~~I~~l~fspdg~~Latgs~----Dg-------~I~IWDl~~~~~~~~~~ 636 (837)
+++.|+. .+.+||..+.+-.. .+..............++.+++.|+. ++ .+.+||..+.......-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444443 37889988776543 12211122223333456778888873 12 27788887655321111
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCC-------CcEEEEECCCCeeeeEEecCCCe--eEEEEecCCCEEEEEEc-----
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFKCQSGA--TQMRFQPRLGRILAAAI----- 702 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~D-------g~I~vwDl~t~~~i~~~~~~~~i--~sl~~sp~g~~llags~----- 702 (837)
......-.+++.. + +.+++.|+.+ ..+.+||+.+.+-...-...... .+++. .++..++.|+.
T Consensus 96 ~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 96 LPSARCLFGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp BSSCBCSCEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred CCccccccceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence 1111111222222 3 4566666643 35888999877644432222211 12222 35555566654
Q ss_pred -CCeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCceeEEEeecCCCceEE
Q 003236 703 -ENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHS 773 (837)
Q Consensus 703 -dg~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D-----g~I~IwDl~s~~~~~~i~~~~~~~~~I~s 773 (837)
.+.+.+||+.+.+-... +....... +++.. ++++++.|+ + ..+.+||+.+.. ...+..+...... .+
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~ 248 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMF-GVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQERSS-IS 248 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSCCBS-CE
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccc-eEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCcccc-eE
Confidence 24699999988643322 11111111 22222 556666665 2 257889987752 1222222111111 12
Q ss_pred EEEeCCCCEEEEEEcC--------------CeEEEEECCCCcEEEe
Q 003236 774 CVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL 805 (837)
Q Consensus 774 v~fspdg~~L~sgs~d--------------g~I~IwDl~s~~~~~l 805 (837)
++. -++..+++|+.+ ..|.+||+.+.+...+
T Consensus 249 ~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 249 LVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 222 245566666543 3688999988776644
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.00 E-value=0.018 Score=62.32 Aligned_cols=231 Identities=8% Similarity=-0.073 Sum_probs=113.0
Q ss_pred CCCEEEEEECC-CcEEEEeCCC--CeE--EEEec-cCCCCeEEEEEcCCCCEEEEEeC-C---------CeEEEEEcCCC
Q 003236 566 DGKLLATGGHD-KKAVLWCTES--FTV--KSTLE-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP 629 (837)
Q Consensus 566 dg~~Lasgs~D-g~I~VWd~~t--~~~--~~~l~-~h~~~I~~l~fspdg~~Latgs~-D---------g~I~IWDl~~~ 629 (837)
++++++.|+.+ ..+.+||..+ .+- +..+. .......++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56676777643 5688899863 222 22222 11112222222 5667777765 2 46889999876
Q ss_pred CceeEEeec-cccceEEEEEcCCCCeEEEEEeCC---------------------------------------CcEEEEE
Q 003236 630 DYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYWS 669 (837)
Q Consensus 630 ~~~~~~~~~-h~~~V~sl~fspdg~~llasgs~D---------------------------------------g~I~vwD 669 (837)
......... ....-.+++. .+ +.+++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 542211111 1111112222 23 4577777654 5789999
Q ss_pred CCCCeeeeEEecCC--Ce-eEEEEecCCCEEEEEEc------CCeEEEEEC--CCCeEE--EEEcCCCCCEEEEEEcCCC
Q 003236 670 INNGSCAGVFKCQS--GA-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCR--LKLQGHKNQVHSVCWNTSG 736 (837)
Q Consensus 670 l~t~~~i~~~~~~~--~i-~sl~~sp~g~~llags~------dg~I~iwDl--~s~~~~--~~l~~h~~~V~sl~~spdg 736 (837)
+.+.+-...-.... .. .+++.. ++..++.|+. ...+.+||+ .+.+-. ..+........+.+...++
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 98876554433221 22 233333 4455555543 346778887 433221 1111111111111222355
Q ss_pred CEEEEEe-C----------------------CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC---
Q 003236 737 EYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--- 790 (837)
Q Consensus 737 ~~Lasgs-D----------------------g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg--- 790 (837)
++++.|+ + ..+.+||+.+.. ...+..+....... .++.-++..+++|+.++
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYG--VSLPWNNSLLIIGGETAGGK 330 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSS--EEEEETTEEEEEEEECGGGC
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCcccc--eeEEeCCEEEEEeeeCCCCC
Confidence 6666655 2 257889988653 23333333222222 22334667778888653
Q ss_pred ---eEEEEECCCCcEEE
Q 003236 791 ---TLELWNMTENKTLT 804 (837)
Q Consensus 791 ---~I~IwDl~s~~~~~ 804 (837)
.|.++++++++.+.
T Consensus 331 ~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEEC-CCSCEE
T ss_pred EeeeEEEEEEcCcEeEe
Confidence 57778998888773
No 334
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.99 E-value=0.034 Score=59.27 Aligned_cols=195 Identities=9% Similarity=0.046 Sum_probs=114.2
Q ss_pred CCCCEEEEEe--CCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCC-------------CcEEEEECC
Q 003236 607 PSLSRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------SEIRYWSIN 671 (837)
Q Consensus 607 pdg~~Latgs--~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~D-------------g~I~vwDl~ 671 (837)
.++..|+... .++.|+..+.+... ...+... . +--++++++.+.++...+ ..|+..++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~--~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN--IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS--CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC--CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 4566666654 24566666665433 2333221 1 234567888888776654 467777877
Q ss_pred CCeeeeEEecCCCeeEEEEecCCCEEEEEE----cCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeC--C
Q 003236 672 NGSCAGVFKCQSGATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSD--E 745 (837)
Q Consensus 672 t~~~i~~~~~~~~i~sl~~sp~g~~llags----~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsD--g 745 (837)
..+...... . .+..|+++++.|+... ....|+..++..... ..+..+.. ..|+++++.|+..++ .
T Consensus 97 g~~~~~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 97 GHGSTVLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp SCCCEEEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CCcceEeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 665333222 2 2336788889988877 234677777764433 33333332 456778888887774 5
Q ss_pred eEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEECCCCcEEEeccCCCCeeEEEEeCCCCE
Q 003236 746 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGM 823 (837)
Q Consensus 746 ~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg--~I~IwDl~s~~~~~l~~h~~~V~sla~spdg~~ 823 (837)
.|.+.++..+.. +.+ +. .... ..++|++.+|+.....+ .|..-++.......+... .+ ..|+|++++
T Consensus 168 ~Iy~~~l~g~~~-~~l--~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~~~~~~g~~ 236 (302)
T 3s25_A 168 QLYRYDTASQSE-ALF--YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--EHYNVYGSL 236 (302)
T ss_dssp CEEEEETTTTEE-EEE--EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--EEEEEETTE
T ss_pred eEEEEECCCCCE-EEE--eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--ceEEECCCE
Confidence 788888776521 112 22 2222 34669999998887653 788888877765554322 23 235666666
Q ss_pred EEEE
Q 003236 824 VASA 827 (837)
Q Consensus 824 LaSg 827 (837)
|+.+
T Consensus 237 Iy~~ 240 (302)
T 3s25_A 237 IFYQ 240 (302)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.88 E-value=0.36 Score=54.33 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEE--EEecc------CCCCeEEEEEcCC---CCEEEEEeC------
Q 003236 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------ 617 (837)
Q Consensus 555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~--~~l~~------h~~~I~~l~fspd---g~~Latgs~------ 617 (837)
-..-+.|+|.|||+++++-...+.|++++..++... ..+.. ....+..|+|+|+ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345679999999987776544357988876555433 23321 2456789999995 555555442
Q ss_pred -------CCeEEEEEcCCCCc-------eeEEee-ccccceEEEEEcCCCCeEEEEEe
Q 003236 618 -------DRTVRVWDTENPDY-------SLRTFT-GHSTTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 618 -------Dg~I~IWDl~~~~~-------~~~~~~-~h~~~V~sl~fspdg~~llasgs 660 (837)
...|.-|++..... .+..+. ........|+|.|+|..++.+|+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 23566666543211 111121 11234688999999875554443
No 336
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.85 E-value=0.062 Score=59.41 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=93.4
Q ss_pred CCCEEEEEEcCCeEEEEECCCCeEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC-c--------e
Q 003236 693 RLGRILAAAIENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-G--------E 759 (837)
Q Consensus 693 ~g~~llags~dg~I~iwDl~s~~~~~~l~~h----~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~-~--------~ 759 (837)
++..++++- ++.|+..++......+.+... -..|..+..+|+|.+||..++..|.|..+..+.. . .
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 334443333 366777776633222233221 2257889999999999999999999999984321 0 1
Q ss_pred eEEEeec------CCCceEEEEEeCCC---CEEEEEEcCCeEEEEECCCCc--EE---------EeccCCCCeeEEEEeC
Q 003236 760 CIHELSC------TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TL---------TLSAHDKLVSSLAAST 819 (837)
Q Consensus 760 ~i~~~~~------~~~~I~sv~fspdg---~~L~sgs~dg~I~IwDl~s~~--~~---------~l~~h~~~V~sla~sp 819 (837)
....+.. ....|..+.|||-+ ..|++-..|+.|++||+.... +. ........|.+++|..
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 1122222 24679999999965 689999999999999997622 11 1223346789999999
Q ss_pred CCCEEEEEE--CCCcEE
Q 003236 820 VNGMVASAS--HDKCVK 834 (837)
Q Consensus 820 dg~~LaSgs--~DG~I~ 834 (837)
++-.|+..+ .+|.|+
T Consensus 190 ~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp TSSCEEEEECTTSCEEE
T ss_pred CCcEEEEEecCCCCCEE
Confidence 887666655 778775
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.85 E-value=0.11 Score=55.04 Aligned_cols=210 Identities=10% Similarity=0.021 Sum_probs=104.1
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC-----C------CcEEEEECCCCeeeeEE
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVF 679 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~-----D------g~I~vwDl~t~~~i~~~ 679 (837)
+++.|+ ..+.+||..+.......+..............+ +.+++.|+. . ..+.+||+.+.+-...-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKE-NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTT-CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEEC-CEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 344454 579999999877543222211122222222334 445556652 1 13788999887643322
Q ss_pred ecCCCe--eEEEEecCCCEEEEEEcC--------CeEEEEECCCCeEEE--EEcCCCCCEEEEEEcCCCCEEEEEe--C-
Q 003236 680 KCQSGA--TQMRFQPRLGRILAAAIE--------NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--D- 744 (837)
Q Consensus 680 ~~~~~i--~sl~~sp~g~~llags~d--------g~I~iwDl~s~~~~~--~l~~h~~~V~sl~~spdg~~Lasgs--D- 744 (837)
...... .+++.. ++..++.|+.+ +.+.+||+.+.+-.. .+...... .+++. -++++++.|+ +
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTT
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCC
Confidence 222111 122222 44555566532 468999998764322 11111111 12222 3555666554 2
Q ss_pred ----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEECCCCcEEEeccCCC--Cee
Q 003236 745 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDK--LVS 813 (837)
Q Consensus 745 ----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg-----~I~IwDl~s~~~~~l~~h~~--~V~ 813 (837)
..+.+||+.+.. ...+..+...... .+++.. ++..+++|+.++ .+.+||+.+.+...+..... .-.
T Consensus 161 ~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE-WKELAPMQTARSL-FGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL 237 (315)
T ss_dssp SCBCCCEEEEETTTTE-EEECCCCSSCCBS-CEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC
T ss_pred CcccceEEEEeCCCCe-EEECCCCCCchhc-eEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 368999987752 1111111111111 222222 566677777654 68999999887665432111 111
Q ss_pred EEEEeCCCCEEEEEECC
Q 003236 814 SLAASTVNGMVASASHD 830 (837)
Q Consensus 814 sla~spdg~~LaSgs~D 830 (837)
+++. -++++++.|+.+
T Consensus 238 ~~~~-~~~~l~v~GG~~ 253 (315)
T 4asc_A 238 SLVS-LVGTLYAIGGFA 253 (315)
T ss_dssp EEEE-ETTEEEEEEEEE
T ss_pred eEEE-ECCEEEEECCcc
Confidence 2222 356777777764
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.012 Score=63.63 Aligned_cols=192 Identities=6% Similarity=-0.022 Sum_probs=104.5
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEeecc-ccceEEEEE--cCCCCeEEEEE-eCCCcEEEEECCCCeeeeEEecCCCe
Q 003236 610 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDF--HPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKCQSGA 685 (837)
Q Consensus 610 ~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h-~~~V~sl~f--spdg~~llasg-s~Dg~I~vwDl~t~~~i~~~~~~~~i 685 (837)
.++++++.||.|+-+|..+++. ...+... ..++....- .+.+..+++.. ..||.|+.++..+|.....+.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 4788999999999999998775 3333322 122222110 01123344443 57999999999988666555532211
Q ss_pred e--EEEEe-----------cCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCC--CC-----EEEEEEc-----CCCCEEE
Q 003236 686 T--QMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLA 740 (837)
Q Consensus 686 ~--sl~~s-----------p~g~~llags~dg~I~iwDl~s~~~~~~l~~h~--~~-----V~sl~~s-----pdg~~La 740 (837)
. -+... ..++.+++++.++.+..+|+++|+.+..+.... .. ..|.... ..+..|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1 11111 146789999999999999999999999987431 10 1111111 1234555
Q ss_pred EEe-CCeEEEEEcCCCCCcee-EEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCeEEEEECCCCcEEE
Q 003236 741 SVS-DELVRVWSIGSGSKGEC-IHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT 804 (837)
Q Consensus 741 sgs-Dg~I~IwDl~s~~~~~~-i~~~~~~~~~--I-~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~~ 804 (837)
.+. +..|.+.+ +++..... +......... + ..-.++.++.+ ++++.||.|+.+|..++..+-
T Consensus 170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 555 66676666 33321110 1111110000 0 00001123554 557888888888888777653
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0088 Score=64.81 Aligned_cols=185 Identities=9% Similarity=0.033 Sum_probs=102.7
Q ss_pred CEEEEEECCCcEEEEeCCCCeEEEEeccC-CCCeEEEEEc--C-CCCEEEEE-eCCCeEEEEEcCCCCceeEEeec----
Q 003236 568 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--P-SLSRLATS-SADRTVRVWDTENPDYSLRTFTG---- 638 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-~~~I~~l~fs--p-dg~~Latg-s~Dg~I~IWDl~~~~~~~~~~~~---- 638 (837)
.++++++.||.|+-+|.++|+....+... ..++....-. + ++..++.. +.||.|+.++..++.... .+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccce
Confidence 37888999999999999999999888654 1222221100 1 22333333 589999999988764322 1111
Q ss_pred cccceEE---EEE-cC---CCCeEEEEEeCCCcEEEEECCCCeeeeEEecCCCe--------eEEEEe-----cCCCEEE
Q 003236 639 HSTTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQSGA--------TQMRFQ-----PRLGRIL 698 (837)
Q Consensus 639 h~~~V~s---l~f-sp---dg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~~~i--------~sl~~s-----p~g~~ll 698 (837)
...++.. ... .+ .....+++++.+|.+...|+++|+.+..+...... .|.... ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 1111211 000 00 02346778999999999999999999998764321 122111 1235677
Q ss_pred EEEcCCeEEEEECCCCeEEEEE-----cCCCCC--E-EEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003236 699 AAAIENYISILDVETQVCRLKL-----QGHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSG 755 (837)
Q Consensus 699 ags~dg~I~iwDl~s~~~~~~l-----~~h~~~--V-~sl~~spdg~~LasgsDg~I~IwDl~s~ 755 (837)
.+..+..+.+.+ ++++ +..+ ...... + .+-..+.|+.++++..||.|..+|..++
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G 232 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFR 232 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTC
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCC
Confidence 777777777776 4443 2111 110000 0 0000112466666555888888887776
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.61 E-value=0.16 Score=53.69 Aligned_cols=210 Identities=11% Similarity=0.053 Sum_probs=102.0
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC----CC-------cEEEEECCCCeeeeEE
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVF 679 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~----Dg-------~I~vwDl~t~~~i~~~ 679 (837)
+++.|+. .+.+||..+.+....................+ +.+++.|+. ++ .+.+||..+.+-...-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 3444443 48899998876533222211111122222333 446666662 11 2778898876644332
Q ss_pred ecCCC--eeEEEEecCCCEEEEEEcC-------CeEEEEECCCCeEEEEEcCCCCCE--EEEEEcCCCCEEEEEe--C--
Q 003236 680 KCQSG--ATQMRFQPRLGRILAAAIE-------NYISILDVETQVCRLKLQGHKNQV--HSVCWNTSGEYLASVS--D-- 744 (837)
Q Consensus 680 ~~~~~--i~sl~~sp~g~~llags~d-------g~I~iwDl~s~~~~~~l~~h~~~V--~sl~~spdg~~Lasgs--D-- 744 (837)
..... -.+++.. ++..++.|+.+ ..+.+||+.+.+-... .....+. .+++. .++++++.|+ +
T Consensus 95 ~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 95 PLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVIS-HNGMIYCLGGKTDDK 171 (318)
T ss_dssp CBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEE-ETTEEEEECCEESSS
T ss_pred CCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEE-ECCEEEEEcCCCCCC
Confidence 22111 1222222 55666677653 3588999987643322 1111111 12222 3566666654 2
Q ss_pred ---CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCCCC--eeE
Q 003236 745 ---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSS 814 (837)
Q Consensus 745 ---g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~~~--V~s 814 (837)
..+.+||+.+.. ...+......... .+++.. ++..+++|+.+ ..+.+||+.+.+...+.....+ -.+
T Consensus 172 ~~~~~~~~yd~~~~~-W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 248 (318)
T 2woz_A 172 KCTNRVFIYNPKKGD-WKDLAPMKTPRSM-FGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSIS 248 (318)
T ss_dssp CBCCCEEEEETTTTE-EEEECCCSSCCBS-CEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCE
T ss_pred CccceEEEEcCCCCE-EEECCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceE
Confidence 258999988752 1122111111111 222222 55666666653 3688999998876644322111 112
Q ss_pred EEEeCCCCEEEEEECC
Q 003236 815 LAASTVNGMVASASHD 830 (837)
Q Consensus 815 la~spdg~~LaSgs~D 830 (837)
++ ..++++++.|+.+
T Consensus 249 ~~-~~~~~i~v~GG~~ 263 (318)
T 2woz_A 249 LV-SLAGSLYAIGGFA 263 (318)
T ss_dssp EE-EETTEEEEECCBC
T ss_pred EE-EECCEEEEECCee
Confidence 22 2356777777754
No 341
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.56 E-value=0.086 Score=55.68 Aligned_cols=215 Identities=6% Similarity=-0.052 Sum_probs=104.8
Q ss_pred CCCEEEEEeC----CCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeC----C-----CcEEEEECCCCe
Q 003236 608 SLSRLATSSA----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINNGS 674 (837)
Q Consensus 608 dg~~Latgs~----Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~----D-----g~I~vwDl~t~~ 674 (837)
++.+++.|+. -..+.+||..+..............-.+++.. ++.+++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4455555553 23578888876543211111111111122222 3456666664 2 468899998776
Q ss_pred eeeEEecCCC--eeEEEEecCCCEEEEEEcC-----CeEEEEECCCCeEEEE--EcCCCCCEEEEEEcCCCCEEEEEe-C
Q 003236 675 CAGVFKCQSG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D 744 (837)
Q Consensus 675 ~i~~~~~~~~--i~sl~~sp~g~~llags~d-----g~I~iwDl~s~~~~~~--l~~h~~~V~sl~~spdg~~Lasgs-D 744 (837)
-...-..... -.+++.. ++..++.|+.+ ..+.+||+.+.+-... +........++.+ ++.+++.|+ +
T Consensus 102 W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 178 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD 178 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred EeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence 4333222111 1122222 45555565533 4688999987643322 1111112222222 566666665 3
Q ss_pred -----CeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEECCCCcEEEeccCCCC--e
Q 003236 745 -----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--V 812 (837)
Q Consensus 745 -----g~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d-----g~I~IwDl~s~~~~~l~~h~~~--V 812 (837)
..+.+||+.+.. ...+..+....... +++.. ++..+++|+.+ ..+.+||+.+.+...+.....+ -
T Consensus 179 ~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNE-WRMITAMNTIRSGA-GVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp SSCBCCCEEEEETTTTE-EEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCcCceEEEEeCCCCe-EeeCCCCCCccccc-eEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 368899987652 11111111111112 22222 55666666654 4699999998876644322111 1
Q ss_pred eEEEEeCCCCEEEEEECCC
Q 003236 813 SSLAASTVNGMVASASHDK 831 (837)
Q Consensus 813 ~sla~spdg~~LaSgs~DG 831 (837)
.+++. -++++++.|+.++
T Consensus 256 ~~~~~-~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 256 LGITV-HQGRIYVLGGYDG 273 (308)
T ss_dssp CEEEE-ETTEEEEECCBCS
T ss_pred eEEEE-ECCEEEEEcCcCC
Confidence 12222 3577777877553
No 342
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=96.54 E-value=0.0022 Score=72.47 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHh-hccccccchhhh
Q 003236 53 FEWWSVFWDIFIA-RTNEKHSESAAS 77 (837)
Q Consensus 53 ~eww~~fwd~f~a-~~~~~~s~~~~~ 77 (837)
-+.|.++.+.+.. -.+....+.+..
T Consensus 337 ~~~~~~~~~~~~~~~~G~~~~eeal~ 362 (449)
T 3iot_A 337 SAFWYAVRTAVINAASGRQTVDAALA 362 (449)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4455555554443 233333343333
No 343
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.43 E-value=0.079 Score=66.57 Aligned_cols=235 Identities=12% Similarity=0.168 Sum_probs=141.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeecc-
Q 003236 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH- 639 (837)
Q Consensus 561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h- 639 (837)
.-.+|..+.||.-. ..++.|||+++...+..+.- ...|..=.|-.+. .|+..+ +..|+-|++.....+.+.+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 34567777777654 67899999998877777654 3456666776543 344442 4579999998656666666655
Q ss_pred ---ccceEEEEEcCCCCeEEEEEe------CCCcEEEEECCCCeeeeEEecCC-CeeEEEE--ecCCCEEEEEEc----C
Q 003236 640 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKCQS-GATQMRF--QPRLGRILAAAI----E 703 (837)
Q Consensus 640 ---~~~V~sl~fspdg~~llasgs------~Dg~I~vwDl~t~~~i~~~~~~~-~i~sl~~--sp~g~~llags~----d 703 (837)
...|.....+++.+.++++|= ..|.+.+|.++.+..- .+.++. ....+.. .+....+++-.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ-~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch-hhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 456777788888888887663 3477888887754321 111110 0111111 011112222221 2
Q ss_pred CeEEEEECCCC---eE------EEEEcC---CCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCceeEEEeecCCCc
Q 003236 704 NYISILDVETQ---VC------RLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK 770 (837)
Q Consensus 704 g~I~iwDl~s~---~~------~~~l~~---h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~~~i~~~~~~~~~ 770 (837)
+.+.|.++... .. +..+.. ..+-..++..++.-.++...+ -|.|.+||+.++ .++..-......
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~ 302 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET 302 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence 68888887542 11 111111 122344666677666666666 899999999998 666665555666
Q ss_pred eEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE
Q 003236 771 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL 803 (837)
Q Consensus 771 I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~ 803 (837)
|...+.+....-+++....|.|.-..+....++
T Consensus 303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 665555554445666667777776666666554
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.37 E-value=0.22 Score=53.61 Aligned_cols=185 Identities=10% Similarity=-0.028 Sum_probs=91.2
Q ss_pred CCCEEEEEEC-C---------CcEEEEeCCCCeEEEEeccC-CC--CeEEEEEcCCCCEEEEEeCC--------------
Q 003236 566 DGKLLATGGH-D---------KKAVLWCTESFTVKSTLEEH-TQ--WITDVRFSPSLSRLATSSAD-------------- 618 (837)
Q Consensus 566 dg~~Lasgs~-D---------g~I~VWd~~t~~~~~~l~~h-~~--~I~~l~fspdg~~Latgs~D-------------- 618 (837)
++++++.|+. + ..+.+||..+.+-...-... .. ...++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5677777765 2 46889998876544322111 11 122222 467777888764
Q ss_pred -------------------------CeEEEEEcCCCCceeEEeeccccce-EEEEEcCCCCeEEEEEeC------CCcEE
Q 003236 619 -------------------------RTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDN------NSEIR 666 (837)
Q Consensus 619 -------------------------g~I~IWDl~~~~~~~~~~~~h~~~V-~sl~fspdg~~llasgs~------Dg~I~ 666 (837)
..+.+||+.+.......-....... .+++.. ++.+++.|+. ...+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence 5789999987654322211111111 233333 3456666653 34677
Q ss_pred EEEC--CCCeeeeEEec--CC-CeeEEEEecCCCEEEEEEcC----------------------CeEEEEECCCC--eEE
Q 003236 667 YWSI--NNGSCAGVFKC--QS-GATQMRFQPRLGRILAAAIE----------------------NYISILDVETQ--VCR 717 (837)
Q Consensus 667 vwDl--~t~~~i~~~~~--~~-~i~sl~~sp~g~~llags~d----------------------g~I~iwDl~s~--~~~ 717 (837)
+||+ .+.+-...-.. .. .....+...++..++.|+.+ ..+.+||+.+. ..+
T Consensus 221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 8887 44332222111 11 11222233355666666532 25788998865 344
Q ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEe-CC------eEEEEEcCCCC
Q 003236 718 LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGS 756 (837)
Q Consensus 718 ~~l~~h~~~V~sl~~spdg~~Lasgs-Dg------~I~IwDl~s~~ 756 (837)
..+........++. -++++++.|+ ++ .|.++++++++
T Consensus 301 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 301 GELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 33332222222222 3566666665 32 46666877763
No 345
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.30 E-value=0.2 Score=63.10 Aligned_cols=218 Identities=10% Similarity=0.174 Sum_probs=130.4
Q ss_pred CCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeE
Q 003236 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL 655 (837)
Q Consensus 576 Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~l 655 (837)
...|.|.|+.++..+.+-. -.--+.-.+|..+.||.-. ..++.|||+++... +..+.- ...|.-=.|-.... +
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~~-l 119 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT-V 119 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCCe-e
Confidence 3478899988765442211 1112333567666666654 77999999997543 444443 34566666665433 3
Q ss_pred EEEEeCCCcEEEEECCC-CeeeeEEec-----CCCeeEEEEecCCCEEEEEEc-------CCeEEEEECCCCeEEEEEcC
Q 003236 656 LCSCDNNSEIRYWSINN-GSCAGVFKC-----QSGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG 722 (837)
Q Consensus 656 lasgs~Dg~I~vwDl~t-~~~i~~~~~-----~~~i~sl~~sp~g~~llags~-------dg~I~iwDl~s~~~~~~l~~ 722 (837)
.+.+ +..|+.|++.. ..+++.|.. ...|.....+++.++++..+- .|.+.+|..+.+. ...+.|
T Consensus 120 ~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg 196 (1630)
T 1xi4_A 120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (1630)
T ss_pred EEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH
Confidence 2222 56899999964 234444432 345777778888888776553 4788899887543 234455
Q ss_pred CCCCEEEEEEcC---CCCEEEEEe----CCeEEEEEcCCC---CC--c-eeEEEee---cCCCceEEEEEeCCCCEEEEE
Q 003236 723 HKNQVHSVCWNT---SGEYLASVS----DELVRVWSIGSG---SK--G-ECIHELS---CTGNKFHSCVFHPTFPSLLVI 786 (837)
Q Consensus 723 h~~~V~sl~~sp---dg~~Lasgs----Dg~I~IwDl~s~---~~--~-~~i~~~~---~~~~~I~sv~fspdg~~L~sg 786 (837)
|......+.... ...+++.+. .+.++|.++... .. . +.+..+- ....-..++..++....++..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i 276 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence 655444443321 122333333 268999998653 10 0 1111111 112334567788888899999
Q ss_pred EcCCeEEEEECCCCcEE
Q 003236 787 GCYETLELWNMTENKTL 803 (837)
Q Consensus 787 s~dg~I~IwDl~s~~~~ 803 (837)
+..|.|++||+.++.++
T Consensus 277 tk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 277 TKYGYIHLYDLETGTCI 293 (1630)
T ss_pred ecCceEEEEecccchhh
Confidence 99999999999999876
No 346
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.20 E-value=0.28 Score=54.17 Aligned_cols=142 Identities=11% Similarity=0.110 Sum_probs=92.1
Q ss_pred CCCCeEEEEEeCCCcEEEEECCCCeeeeEEecC-----CCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe---------
Q 003236 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKCQ-----SGATQMRFQPRLGRILAAAIENYISILDVETQV--------- 715 (837)
Q Consensus 650 pdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~~-----~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~--------- 715 (837)
.++..+++.- ++.||.-++.....-+.+... ..+..+..+|+|.+++.. .+..|.|..+..+.
T Consensus 30 ~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccc
Confidence 3445555443 578888888755444455443 268889999998877766 45688888876221
Q ss_pred ---EEEEEcC------CCCCEEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCceeE--------EEeecCCCceEEE
Q 003236 716 ---CRLKLQG------HKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECI--------HELSCTGNKFHSC 774 (837)
Q Consensus 716 ---~~~~l~~------h~~~V~sl~~spdg---~~Lasgs-Dg~I~IwDl~s~~~~~~i--------~~~~~~~~~I~sv 774 (837)
..+.+.- ...+|..+.|+|-+ ..|++-. |+.|++||+..... ++. ..+......|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEEE
Confidence 1222321 25689999999943 4555555 99999999986321 222 1112223678999
Q ss_pred EEeCCCCEEEEEE--cCCeEEEE
Q 003236 775 VFHPTFPSLLVIG--CYETLELW 795 (837)
Q Consensus 775 ~fspdg~~L~sgs--~dg~I~Iw 795 (837)
+|..++-.|++.+ ..|.|+-.
T Consensus 186 ~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 186 EFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EECTTSSCEEEEECTTSCEEEEE
T ss_pred EEcCCCcEEEEEecCCCCCEEEE
Confidence 9999988888866 67777643
No 347
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=96.15 E-value=1.2 Score=48.59 Aligned_cols=255 Identities=7% Similarity=-0.028 Sum_probs=121.3
Q ss_pred CCCeEEEEEcC--CCCEEEEEECCC----cEEEEeCCCCeEEEEecc--------------CCCCeEEEEEcC-C-CCEE
Q 003236 555 TSKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRL 612 (837)
Q Consensus 555 ~~~V~sl~fSp--dg~~Lasgs~Dg----~I~VWd~~t~~~~~~l~~--------------h~~~I~~l~fsp-d-g~~L 612 (837)
...|.+|++.| ++.++| ++..| .|...+ +.++.-..+.. +...|.+|++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 34699999998 555554 44444 344332 22322222211 112578899987 2 4566
Q ss_pred EEEeCCCeEEEEEcCCCCceeEEeec-------------------cccceEEEEEcCCC-CeEEEEEeCCCcEEEEECCC
Q 003236 613 ATSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN 672 (837)
Q Consensus 613 atgs~Dg~I~IWDl~~~~~~~~~~~~-------------------h~~~V~sl~fspdg-~~llasgs~Dg~I~vwDl~t 672 (837)
+.+...+.|...+ ++......+.. ....|.+|.++|.. ..+++... ++.|...+ ..
T Consensus 132 ~~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-~ggl~~s~-Dg 207 (394)
T 3b7f_A 132 YAGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-SGGVFEST-DA 207 (394)
T ss_dssp EEEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-TBEEEEES-ST
T ss_pred EEEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-CCCEEEEC-CC
Confidence 6666666555443 22221222211 12357899999843 34444333 44444332 22
Q ss_pred CeeeeEEec--------------CCCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcC--CC---CCEEEEEE
Q 003236 673 GSCAGVFKC--------------QSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCW 732 (837)
Q Consensus 673 ~~~i~~~~~--------------~~~i~sl~~sp~-g~~llags~dg~I~iwDl~s~~~~~~l~~--h~---~~V~sl~~ 732 (837)
++.-..+.. ...+.++.+.+. .+.++++.. +.|...+-. ++.-..+.. .. ..+.++++
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence 222222111 123788888886 366666654 445554432 222222221 11 34667888
Q ss_pred cCC--CCEEEEEe-----------CCeEEEEEcCCC-CCceeEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCeE
Q 003236 733 NTS--GEYLASVS-----------DELVRVWSIGSG-SKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETL 792 (837)
Q Consensus 733 spd--g~~Lasgs-----------Dg~I~IwDl~s~-~~~~~i~~-~~~~~~----~I~sv~fspdg-~~L~sgs~dg~I 792 (837)
+|. +.+++... ++...||....+ .....+.. +..... ....++++|.. ..|++++.++.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 763 34444331 233456655543 22222211 111000 11357788753 457777666666
Q ss_pred EEEECCCCc-EEEeccCCCCeeEEEEe
Q 003236 793 ELWNMTENK-TLTLSAHDKLVSSLAAS 818 (837)
Q Consensus 793 ~IwDl~s~~-~~~l~~h~~~V~sla~s 818 (837)
+.-+ ..++ ...+..+-..|.+|+|.
T Consensus 366 ~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 5433 3333 22444444567777764
No 348
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.08 E-value=0.39 Score=48.42 Aligned_cols=174 Identities=14% Similarity=0.007 Sum_probs=96.8
Q ss_pred CeEEEEEeCCCcEEEEECCCCe------eeeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeE------EE
Q 003236 653 EDLLCSCDNNSEIRYWSINNGS------CAGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL 718 (837)
Q Consensus 653 ~~llasgs~Dg~I~vwDl~t~~------~i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~------~~ 718 (837)
+.+|++...| +|+.=....+. ....+.. -..+..++|+|++. |+++ .+|.++-.+..+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccccc
Confidence 3455566656 55554443333 1122222 24678999999766 4444 888888887755111 11
Q ss_pred EEc-CCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcee----EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 719 KLQ-GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC----IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 719 ~l~-~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~----i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
.+- .--....++.|+++|.+.++ +||.|+-++-.+.....- ...-...-..+..+.|.|+|... ++. ++.++
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Ly-av~-dg~ly 157 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLY-AVH-GQQFY 157 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEE-EEE-TTEEE
T ss_pred EecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEE-EEe-CCcEE
Confidence 111 01112478999999999888 889888776533221111 11111122568999999999844 444 77765
Q ss_pred EEECCCCcE------EEe-c-cCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 794 LWNMTENKT------LTL-S-AHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 794 IwDl~s~~~------~~l-~-~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
-.....+.. ... . ..-.....+.|.+++.+.++. +|.|+
T Consensus 158 r~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 158 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 443332210 011 1 222344557788888777665 77553
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.02 E-value=0.15 Score=60.69 Aligned_cols=222 Identities=5% Similarity=-0.001 Sum_probs=110.6
Q ss_pred CCCEEEEEeCC----CeEEEEEcCCCCceeEEee------ccccceEEEEEcCCCCeEEEEEeCC------CcEEEEECC
Q 003236 608 SLSRLATSSAD----RTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN 671 (837)
Q Consensus 608 dg~~Latgs~D----g~I~IWDl~~~~~~~~~~~------~h~~~V~sl~fspdg~~llasgs~D------g~I~vwDl~ 671 (837)
++.+++.|+.+ ..+.+||..+......... .....-.+++....++.+++.|+.+ ..+.+||+.
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 34444444432 3577888877654322201 1111122333333124466666643 358899998
Q ss_pred CCeeeeEEec--CCCeeEEEEecCCCEEEEEEcCC--eEEEEECCCCeEEEEE-----cCCCCCEEEEEEcCC-CCEEEE
Q 003236 672 NGSCAGVFKC--QSGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKL-----QGHKNQVHSVCWNTS-GEYLAS 741 (837)
Q Consensus 672 t~~~i~~~~~--~~~i~sl~~sp~g~~llags~dg--~I~iwDl~s~~~~~~l-----~~h~~~V~sl~~spd-g~~Las 741 (837)
+.+-...-.. ...-.+++...++..++.|+.++ .+.+||..+..-...- ........++.+..+ +++++.
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~ 556 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL 556 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence 8654333221 11223333334777788877654 7999999886533221 111222233555555 566666
Q ss_pred Ee---C-----CeEEEEEcCCCCC-----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcC--------CeEEEEECCCC
Q 003236 742 VS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--------ETLELWNMTEN 800 (837)
Q Consensus 742 gs---D-----g~I~IwDl~s~~~-----~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~d--------g~I~IwDl~s~ 800 (837)
|+ + +.+.+||+.+..- ...+.........-.+++...++..+++|+.+ ..|.+||+.+.
T Consensus 557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 65 2 3589999988741 12222211111122233444436666666642 46999999988
Q ss_pred cEEEeccCC--------CCe-eEEEEeCCCCEEEEEEC
Q 003236 801 KTLTLSAHD--------KLV-SSLAASTVNGMVASASH 829 (837)
Q Consensus 801 ~~~~l~~h~--------~~V-~sla~spdg~~LaSgs~ 829 (837)
+........ ..+ .++....++++++.|+.
T Consensus 637 ~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 637 TLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp EEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred eEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence 765321110 000 23333455577777764
No 350
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.01 E-value=0.24 Score=49.97 Aligned_cols=177 Identities=10% Similarity=-0.079 Sum_probs=95.8
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCc-----eeEEeec-cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec
Q 003236 608 SLSRLATSSADRTVRVWDTENPDY-----SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~-----~~~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~ 681 (837)
....|++...| +|++=....... ....+.. -=..+.+++|+|++. +.+. .+|.++-.+..+.....-+..
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence 34567777777 655544443321 1112211 124678999999876 4434 578777777654222111111
Q ss_pred CC--------CeeEEEEecCCCEEEEEEcCCeEEEEECCCCe-------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCe
Q 003236 682 QS--------GATQMRFQPRLGRILAAAIENYISILDVETQV-------CRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 746 (837)
Q Consensus 682 ~~--------~i~sl~~sp~g~~llags~dg~I~iwDl~s~~-------~~~~l~~h~~~V~sl~~spdg~~LasgsDg~ 746 (837)
.. ....+.|.+++...++ .||.|+-++..+.. ....-..--..+..|.|.|+|.+.++. |+.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ 155 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ 155 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence 11 1478889998776666 66999888763311 011111122467999999999999988 887
Q ss_pred EEEEEcCCCCCc---eeEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003236 747 VRVWSIGSGSKG---ECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE 793 (837)
Q Consensus 747 I~IwDl~s~~~~---~~i~~~~-~~~~~I~sv~fspdg~~L~sgs~dg~I~ 793 (837)
++-+...+.... .....+. ..-.....+.|.+++...++. ++.++
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 543322211100 0111111 222344556788888755544 66443
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.55 E-value=4.1 Score=45.73 Aligned_cols=231 Identities=10% Similarity=0.018 Sum_probs=113.9
Q ss_pred CeEEEEEcCCCC-EEEEEECCCcEEEEeCCCC---eEEEEec---------cCCCCeEEEEEcCC----CCEEEEEeC--
Q 003236 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLE---------EHTQWITDVRFSPS----LSRLATSSA-- 617 (837)
Q Consensus 557 ~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~---~~~~~l~---------~h~~~I~~l~fspd----g~~Latgs~-- 617 (837)
.-+.|+|.|||. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 467899999996 4555678899999975422 1222221 11456889999996 333333222
Q ss_pred C----------CeEEEEEcCCC---------CceeEEee--ccccceEEEEEcCCCCeEEEEEeCC--------------
Q 003236 618 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN-------------- 662 (837)
Q Consensus 618 D----------g~I~IWDl~~~---------~~~~~~~~--~h~~~V~sl~fspdg~~llasgs~D-------------- 662 (837)
+ ..|.-|.+... ...+..+. ........|.|.|||..++.+|+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~ 174 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD 174 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence 1 14555665421 11122221 1123467899999987555444321
Q ss_pred --CcEEEEECCCC------e-------------eeeEEe-cCCCeeEEEEecCC-----C-EEEEEEcCC----eEEEEE
Q 003236 663 --SEIRYWSINNG------S-------------CAGVFK-CQSGATQMRFQPRL-----G-RILAAAIEN----YISILD 710 (837)
Q Consensus 663 --g~I~vwDl~t~------~-------------~i~~~~-~~~~i~sl~~sp~g-----~-~llags~dg----~I~iwD 710 (837)
|.|.-.|.... . ....+. .......++|.|.. . .++++...+ .-.|..
T Consensus 175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~ 254 (463)
T 2wg3_C 175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQ 254 (463)
T ss_dssp CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEE
T ss_pred CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEee
Confidence 23444444431 0 001111 12345678999872 3 344332212 122333
Q ss_pred CCCC------eEEEEEcCCC-CCEEEEEEcCC-------CCEEEEEeCCeEEEEEcCCCCCceeEEEe-e--------cC
Q 003236 711 VETQ------VCRLKLQGHK-NQVHSVCWNTS-------GEYLASVSDELVRVWSIGSGSKGECIHEL-S--------CT 767 (837)
Q Consensus 711 l~s~------~~~~~l~~h~-~~V~sl~~spd-------g~~LasgsDg~I~IwDl~s~~~~~~i~~~-~--------~~ 767 (837)
+..+ .++..+..|. ..+..+.|-.. +.+|+..-.+.|....+...........+ . ..
T Consensus 255 i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 334 (463)
T 2wg3_C 255 IIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYF 334 (463)
T ss_dssp EC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCC
T ss_pred eccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccc
Confidence 3222 2334443221 46778877532 34555443666655555433211111111 1 12
Q ss_pred CCceEEEEEeCCCCEEEEEE
Q 003236 768 GNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 768 ~~~I~sv~fspdg~~L~sgs 787 (837)
...+..+.+.|||..+++..
T Consensus 335 ~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 335 SGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CSEEEEEEECTTCCEEEEEE
T ss_pred cCcceEEEECCCCCEEEEec
Confidence 35789999999998666655
No 352
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=95.34 E-value=1.5 Score=52.10 Aligned_cols=235 Identities=9% Similarity=0.006 Sum_probs=122.5
Q ss_pred EcCCCCEEEEEE-----CCCcEEEEeCCCCeEEE-Eec-cCCC------CeEEEEEcCCCCEEEEEe-----------CC
Q 003236 563 FSPDGKLLATGG-----HDKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS-----------AD 618 (837)
Q Consensus 563 fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~~~-~l~-~h~~------~I~~l~fspdg~~Latgs-----------~D 618 (837)
++||+++++.+- .-..|+++|+.+++.+. .+. .-+. ....++|..++ .++.+. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCCcCcCCCC
Confidence 789998877652 22379999999988773 122 0000 11344776443 444432 23
Q ss_pred CeEEEEEcCCCCc-eeEEeeccccce-EEEEEcCCCCe----EEEEEeC---CCcEEEEECCC--CeeeeEEecCCCeeE
Q 003236 619 RTVRVWDTENPDY-SLRTFTGHSTTV-MSLDFHPSKED----LLCSCDN---NSEIRYWSINN--GSCAGVFKCQSGATQ 687 (837)
Q Consensus 619 g~I~IWDl~~~~~-~~~~~~~h~~~V-~sl~fspdg~~----llasgs~---Dg~I~vwDl~t--~~~i~~~~~~~~i~s 687 (837)
..|+.|.+-+... ....+.+....+ .+...++++.. ++++.+. ...+++.|... ++. ..+.......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~- 293 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMPSDAT- 293 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSCTTCE-
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecCCcce-
Confidence 5789998876532 233444433333 34555666653 4555432 24567777653 332 2222222222
Q ss_pred EEEecCCCEEEEE----------EcCCeEEEEECCCCe-------EEEE-Ec-CCCCCEEEEEEcCCCCEEEEEe-CC--
Q 003236 688 MRFQPRLGRILAA----------AIENYISILDVETQV-------CRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DE-- 745 (837)
Q Consensus 688 l~~sp~g~~llag----------s~dg~I~iwDl~s~~-------~~~~-l~-~h~~~V~sl~~spdg~~Lasgs-Dg-- 745 (837)
+..+.++..++.. ...+.|.++|+.+.. .... +. .....+..+.|..+ .++++.. ++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~ 372 (711)
T 4hvt_A 294 LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVA 372 (711)
T ss_dssp EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEE
T ss_pred EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEE
Confidence 2334444443322 235679999987631 1122 32 23346778888876 4455444 66
Q ss_pred eEEEEEcCCCC-CceeEEEeecCCCceEEEEEeCCCCEEEEE-EcC---CeEEEEECCCCcEE
Q 003236 746 LVRVWSIGSGS-KGECIHELSCTGNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL 803 (837)
Q Consensus 746 ~I~IwDl~s~~-~~~~i~~~~~~~~~I~sv~fspdg~~L~sg-s~d---g~I~IwDl~s~~~~ 803 (837)
.|.++|+.++. ....+..+.. ...+..+.+++++..+++. ++. ..++.+|+. ++..
T Consensus 373 ~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~ 433 (711)
T 4hvt_A 373 KVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK 433 (711)
T ss_dssp EEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred EEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence 57777776552 1111111221 2456666667776554443 332 378888887 5443
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=95.27 E-value=4.2 Score=44.15 Aligned_cols=257 Identities=9% Similarity=-0.010 Sum_probs=121.6
Q ss_pred CEEEEEECCCcEEEEeCCC----CeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCC----eEEEEEcCCCCceeEEee-
Q 003236 568 KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADR----TVRVWDTENPDYSLRTFT- 637 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t----~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg----~I~IWDl~~~~~~~~~~~- 637 (837)
..|.+|+..| +.+++... ....... .....|.+|++.| +...|+++...| .|... .++......+.
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~ 98 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATR 98 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSB
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCc
Confidence 3667777766 55555332 2222111 2245699999998 334455555444 34333 22221111111
Q ss_pred -----c--------cccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCCeeeeEEe--------------------cC
Q 003236 638 -----G--------HSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------------CQ 682 (837)
Q Consensus 638 -----~--------h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~~~i~~~~--------------------~~ 682 (837)
. ....|.+|++.|. ...++ .+...+.|...+-. ++.-..+. ..
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~-~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~ 176 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY-AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDG 176 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEE-EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEE-EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCC
Confidence 0 1125778999873 34444 44445555544322 22211111 11
Q ss_pred CCeeEEEEecC-CCEEEEEEcCCeEEEEECCCCeEEEEEcC-----C--------CCCEEEEEEcCC-CCEEEEEeCCeE
Q 003236 683 SGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQG-----H--------KNQVHSVCWNTS-GEYLASVSDELV 747 (837)
Q Consensus 683 ~~i~sl~~sp~-g~~llags~dg~I~iwDl~s~~~~~~l~~-----h--------~~~V~sl~~spd-g~~LasgsDg~I 747 (837)
..+.++.+.|. .+.++++..++.|...+-. ++.-..+.. + ...+.+|.++|+ ...|+++.++.|
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl 255 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGI 255 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeE
Confidence 24678888874 4566777666655544322 211111110 0 124889999986 356666665555
Q ss_pred EEEEcCCCCCceeEEEeec--CC---CceEEEEEeCC-CCEEEEEEc-----------CCeEEEEECCC-CcEE-Eec--
Q 003236 748 RVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIGC-----------YETLELWNMTE-NKTL-TLS-- 806 (837)
Q Consensus 748 ~IwDl~s~~~~~~i~~~~~--~~---~~I~sv~fspd-g~~L~sgs~-----------dg~I~IwDl~s-~~~~-~l~-- 806 (837)
...+-. + .....+.. .. ..+..++++|. ...|+++.. ++...||...+ ++.. .+.
T Consensus 256 ~~s~D~-G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~g 331 (394)
T 3b7f_A 256 YRMDRR-E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRG 331 (394)
T ss_dssp EEEETT-T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBT
T ss_pred EEeCCC-C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCC
Confidence 554422 2 11222211 11 33567788763 344555542 23344554433 3322 221
Q ss_pred -cCCC-----CeeEEEEeCCC-CEEEEEECCCcEEE
Q 003236 807 -AHDK-----LVSSLAASTVN-GMVASASHDKCVKI 835 (837)
Q Consensus 807 -~h~~-----~V~sla~spdg-~~LaSgs~DG~I~I 835 (837)
.... ....++++|.. ..|+.++.++.|.+
T Consensus 332 lp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 332 LPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp SCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 1110 12457887743 44666666665543
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=95.19 E-value=3.3 Score=44.28 Aligned_cols=261 Identities=8% Similarity=0.014 Sum_probs=139.8
Q ss_pred CEEEEEECCCcEEEEeCCCC-------eEE--EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc---CCCC-----
Q 003236 568 KLLATGGHDKKAVLWCTESF-------TVK--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPD----- 630 (837)
Q Consensus 568 ~~Lasgs~Dg~I~VWd~~t~-------~~~--~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl---~~~~----- 630 (837)
..+++.+.+|.|+--.+.+. +-+ ..++ ..+.+..+........|+.-+..|.++-..+ ....
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 46777788888876653321 111 1222 3345665555555667777777887765553 2211
Q ss_pred ceeE---EeeccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCCC-------eeeeEEecCCCeeEEEEecCCCEEE
Q 003236 631 YSLR---TFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFKCQSGATQMRFQPRLGRIL 698 (837)
Q Consensus 631 ~~~~---~~~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t~-------~~i~~~~~~~~i~sl~~sp~g~~ll 698 (837)
.++. .+. ....|.++...++ ...+++..+.+|.|+...+... .....+.....+..+........++
T Consensus 83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEE
Confidence 1111 111 2344555543332 2446668888999999887542 2222333455666666666678899
Q ss_pred EEEcCCeEEEEECC--C---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc----eeEE
Q 003236 699 AAAIENYISILDVE--T---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG----ECIH 762 (837)
Q Consensus 699 ags~dg~I~iwDl~--s---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~~~----~~i~ 762 (837)
..+..|.+..+... . |.....+. ....|.++...+++.+|+..+ .|.++.-.+..-... .-+.
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 99999999888776 2 22222222 345677776666666666666 888888886532110 1122
Q ss_pred --EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-------Ee--ccCCCCeeEEEEeCC-CCEEEEEECC
Q 003236 763 --ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TL--SAHDKLVSSLAASTV-NGMVASASHD 830 (837)
Q Consensus 763 --~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-------~l--~~h~~~V~sla~spd-g~~LaSgs~D 830 (837)
.+......+..+....+...++..+.+|.+..++...-... .. ......|.+++..+. ...+.+.+.+
T Consensus 241 ~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~ 320 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDAN 320 (327)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC------------
T ss_pred EEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecC
Confidence 22222345555555556667888899988877776442221 11 123455666665543 3445555555
Q ss_pred C
Q 003236 831 K 831 (837)
Q Consensus 831 G 831 (837)
|
T Consensus 321 g 321 (327)
T 3uc1_A 321 G 321 (327)
T ss_dssp -
T ss_pred C
Confidence 4
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.14 E-value=5.5 Score=44.72 Aligned_cols=229 Identities=14% Similarity=0.074 Sum_probs=117.6
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCC--ceeEEee---------ccccceEEEEEcCC---CCeEEEEEeC-
Q 003236 598 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTFT---------GHSTTVMSLDFHPS---KEDLLCSCDN- 661 (837)
Q Consensus 598 ~~I~~l~fspdg~-~Latgs~Dg~I~IWDl~~~~--~~~~~~~---------~h~~~V~sl~fspd---g~~llasgs~- 661 (837)
...+.|+|.|++. .|+++...|.|++++..... ..+..+. ........|+|+|+ +..++++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4568999999986 56666789999999754321 1111111 11356789999996 2334444322
Q ss_pred -C----------CcEEEEECCC----------CeeeeEEec---CCCeeEEEEecCCCEEEEEEcCC-------------
Q 003236 662 -N----------SEIRYWSINN----------GSCAGVFKC---QSGATQMRFQPRLGRILAAAIEN------------- 704 (837)
Q Consensus 662 -D----------g~I~vwDl~t----------~~~i~~~~~---~~~i~sl~~sp~g~~llags~dg------------- 704 (837)
+ ..|.-|.+.. .+.+..+.. ......|.|.||+..+++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 1455566542 122333321 23467899999987766655432
Q ss_pred ----eEEEEECCCC---------------------eEEEEEcCCCCCEEEEEEcCC-----CCEEEEEeC--C----eEE
Q 003236 705 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GEYLASVSD--E----LVR 748 (837)
Q Consensus 705 ----~I~iwDl~s~---------------------~~~~~l~~h~~~V~sl~~spd-----g~~LasgsD--g----~I~ 748 (837)
.|.-+|.... ..+.. .+|.+ ...++|+|. |.+.+.++| + .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 3444444431 01111 12332 346899986 443332332 2 233
Q ss_pred EEEcCCCCC---ceeEEEeecC-CCceEEEEEeCCC------CEEEEEEcCCeEEEEECCCCcE----EEec--------
Q 003236 749 VWSIGSGSK---GECIHELSCT-GNKFHSCVFHPTF------PSLLVIGCYETLELWNMTENKT----LTLS-------- 806 (837)
Q Consensus 749 IwDl~s~~~---~~~i~~~~~~-~~~I~sv~fspdg------~~L~sgs~dg~I~IwDl~s~~~----~~l~-------- 806 (837)
|..+..+.. ...+..+..+ ...+..+.|-... ..++++...+.|....++.... ..+.
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 331 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR 331 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence 444433221 1233333322 1456677774332 1255566567777666654321 1221
Q ss_pred -cCCCCeeEEEEeCCCCEEEEEE
Q 003236 807 -AHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 807 -~h~~~V~sla~spdg~~LaSgs 828 (837)
.....+..+.+.|||.++++..
T Consensus 332 ~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 332 GYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp SCCCSEEEEEEECTTCCEEEEEE
T ss_pred ccccCcceEEEECCCCCEEEEec
Confidence 1235789999999999888775
No 356
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=94.47 E-value=0.011 Score=66.63 Aligned_cols=8 Identities=38% Similarity=0.733 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 003236 57 SVFWDIFI 64 (837)
Q Consensus 57 ~~fwd~f~ 64 (837)
.-+|+++.
T Consensus 337 ~~~~~~~~ 344 (449)
T 3iot_A 337 SAFWYAVR 344 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 357
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.34 E-value=0.44 Score=56.70 Aligned_cols=151 Identities=11% Similarity=0.126 Sum_probs=84.9
Q ss_pred CCCEEEEEECC------CcEEEEeCCCCeEEEE--eccCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCceeEE
Q 003236 566 DGKLLATGGHD------KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT 635 (837)
Q Consensus 566 dg~~Lasgs~D------g~I~VWd~~t~~~~~~--l~~h~~~I~~l~fspdg~~Latgs~Dg--~I~IWDl~~~~~~~~~ 635 (837)
++++++.|+.+ ..+.+||..+.+-... +...... .+++...++++++.|+.++ .+.+||+.+.......
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 77788888754 3578899887544322 2111111 2233324788888887755 6899999876543222
Q ss_pred e----eccccceEEEEEcCCCCeEEEEEeC--C-----CcEEEEECCCCe------eeeEEe--cCCC-eeEEEEecCCC
Q 003236 636 F----TGHSTTVMSLDFHPSKEDLLCSCDN--N-----SEIRYWSINNGS------CAGVFK--CQSG-ATQMRFQPRLG 695 (837)
Q Consensus 636 ~----~~h~~~V~sl~fspdg~~llasgs~--D-----g~I~vwDl~t~~------~i~~~~--~~~~-i~sl~~sp~g~ 695 (837)
. ........++.+..+.+.+++.|+. + ..+.+||+.+.. -..... .... -.+++...++.
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~ 609 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK 609 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE
Confidence 1 1111222335555553556767765 2 468999998876 222211 1111 22333333356
Q ss_pred EEEEEEc--------CCeEEEEECCCCeEE
Q 003236 696 RILAAAI--------ENYISILDVETQVCR 717 (837)
Q Consensus 696 ~llags~--------dg~I~iwDl~s~~~~ 717 (837)
.++.|+. ...|.+||+.+.+-.
T Consensus 610 iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 610 LLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp EEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred EEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 6667764 346999999887543
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=94.13 E-value=8 Score=42.13 Aligned_cols=165 Identities=10% Similarity=0.096 Sum_probs=99.2
Q ss_pred cEEEEECCCC--eeeeEEecC-------CCeeEEEEe---cC----CCEEEEEEc-CCeEEEEECCCCeEEEEEcC----
Q 003236 664 EIRYWSINNG--SCAGVFKCQ-------SGATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQG---- 722 (837)
Q Consensus 664 ~I~vwDl~t~--~~i~~~~~~-------~~i~sl~~s---p~----g~~llags~-dg~I~iwDl~s~~~~~~l~~---- 722 (837)
.|.+||++++ +.++.+..+ +.+..+++. +. +.+++.+.. .+.|.|||+.+++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778888888 888877653 236677777 22 345555553 57899999999876655421
Q ss_pred C--------------CCCEEEEEEcCC----CCEEEEEeCCeEEEEEcC-----CCCCceeEEEeecCC--CceEEEEEe
Q 003236 723 H--------------KNQVHSVCWNTS----GEYLASVSDELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVFH 777 (837)
Q Consensus 723 h--------------~~~V~sl~~spd----g~~LasgsDg~I~IwDl~-----s~~~~~~i~~~~~~~--~~I~sv~fs 777 (837)
. ...|..|+++|+ ++.|+...=..-++|.+. .......+..+-..+ ..-...+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 236788999998 778877762223444443 222122233332222 344456776
Q ss_pred -CCCCEEEEEEcCCeEEEEECCC-C----cEEEe--ccCCCCeeEEEEeCCCCEEEEEE
Q 003236 778 -PTFPSLLVIGCYETLELWNMTE-N----KTLTL--SAHDKLVSSLAASTVNGMVASAS 828 (837)
Q Consensus 778 -pdg~~L~sgs~dg~I~IwDl~s-~----~~~~l--~~h~~~V~sla~spdg~~LaSgs 828 (837)
.+|..+++--..+.|..|+..+ . ....+ ...-..+..+.+..++.+.++++
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5565555555667999999876 1 11222 22223577888888887666654
No 359
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.93 E-value=1.8 Score=45.15 Aligned_cols=217 Identities=11% Similarity=0.004 Sum_probs=112.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeee
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~ 677 (837)
..|..|+.... ..+.-. ||.|+.|-...... +-.-......|..|+.... +.++. . ||.|+.|-....-.+.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence 35777776543 223335 99999998664322 1111112346777776543 33333 4 8999999875422111
Q ss_pred -EEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003236 678 -VFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS 756 (837)
Q Consensus 678 -~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~ 756 (837)
.......|..++... .+.++.. +|.|+.|-....-.+-.-......|..|+...+..++ .. ||.|+.|-.....
T Consensus 96 ~P~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~-l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 96 VPAEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA-VK-NGGVIAWGDNYFG 170 (282)
T ss_dssp CCGGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-EE-TTEEEEEECCTTS
T ss_pred CCcccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE-EE-CCEEEEecCCCCC
Confidence 111234566665554 4555556 9999999765421110001123457777654433333 23 8999999765432
Q ss_pred CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003236 757 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI 835 (837)
Q Consensus 757 ~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~~~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~I 835 (837)
... ........|..++.-.. +.++. .++.|+.|-....-.+ .-......|..|+..... .++.. ||.|+.
T Consensus 171 qlg---~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~ 241 (282)
T 3qhy_B 171 QTT---VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIA 241 (282)
T ss_dssp TTS---CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEE
T ss_pred CCC---CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEE
Confidence 111 00011244665555433 33444 6889999975443222 111122457777755433 33333 888888
Q ss_pred e
Q 003236 836 W 836 (837)
Q Consensus 836 W 836 (837)
|
T Consensus 242 w 242 (282)
T 3qhy_B 242 W 242 (282)
T ss_dssp E
T ss_pred e
Confidence 8
No 360
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=93.88 E-value=7.7 Score=41.02 Aligned_cols=230 Identities=10% Similarity=0.050 Sum_probs=128.2
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCeEE---------EEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc---
Q 003236 564 SPDGKLLATGGHDKKAVLWCTESFTVK---------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--- 631 (837)
Q Consensus 564 Spdg~~Lasgs~Dg~I~VWd~~t~~~~---------~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~--- 631 (837)
-++..++++.+.+|.|+-..+...+.. ..+.. .+.+..+........++..+..|.++-+....-..
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 346678889999999998866543211 12232 34455555555566788888999887776542100
Q ss_pred -----e---eEEeeccccceEEEEEcC---CCCeEEEEEeCCCcEEEEECCC-------CeeeeEEecCCCeeEEEEecC
Q 003236 632 -----S---LRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPR 693 (837)
Q Consensus 632 -----~---~~~~~~h~~~V~sl~fsp---dg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~~~~~i~sl~~sp~ 693 (837)
. ...+. ....|.++...+ ++. .++..+..|.++...+.. |.....+.....+..+.....
T Consensus 84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~-~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDA-YLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp ----CBGGGTSCCC-TTCCEEEEEEESCCCTTC-EEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred cCCCcChhhccCCC-CCCEEEEEEEeccCCCCC-EEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 0 01122 223454443332 233 444667799999888743 222323333556666666666
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------C
Q 003236 694 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------K 757 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~ 757 (837)
+..++..+.+|.+..+.... |.....+.. ...|.++....++..|++.+ .|.++..++..-. .
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~k 240 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGAT 240 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCC
Confidence 67899999999999987653 222233332 44566666555555555555 8888888875321 1
Q ss_pred ceeEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 758 GECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 758 ~~~i~~~~-~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
...+..+. .....+..+....+...++..+..|.+.-...
T Consensus 241 Gv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 241 GYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA 281 (312)
T ss_dssp CEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred CEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 11111111 22334444433345556777777775444444
No 361
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=93.87 E-value=5.9 Score=42.20 Aligned_cols=233 Identities=9% Similarity=0.046 Sum_probs=129.0
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCe----EEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---CC-----ce
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD-----YS 632 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~----~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~---~~-----~~ 632 (837)
|+..++++.+.+|.|+--.+...+ ....+.. .+.+..+........|+..+..|.++-+.... .. .+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 566678888999999877544211 1112332 34455555555566788888888877665531 11 11
Q ss_pred eEE-e-eccccceEEEEEcCC--CCeEEEEEeCCCcEEEEECCC--------CeeeeEEecCCCeeEEEEecCCCEEEEE
Q 003236 633 LRT-F-TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINN--------GSCAGVFKCQSGATQMRFQPRLGRILAA 700 (837)
Q Consensus 633 ~~~-~-~~h~~~V~sl~fspd--g~~llasgs~Dg~I~vwDl~t--------~~~i~~~~~~~~i~sl~~sp~g~~llag 700 (837)
+.. + ......|.++...++ ....++.++.+|.++...+.. +.....+.....+..+........++..
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEE
Confidence 111 1 112234555433332 123455778899999988742 2222233334556666666666789999
Q ss_pred EcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCC----ceeEE---
Q 003236 701 AIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----GECIH--- 762 (837)
Q Consensus 701 s~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~spdg~-~Lasgs-Dg~I~IwDl~s~~~----~~~i~--- 762 (837)
+.+|.+..|.... |.....+. ....|.++...+++. .|++.+ .|..+..++..-.. ..-+.
T Consensus 162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~ 240 (323)
T 1wp5_A 162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred eCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence 9999998887643 12222232 234566665544444 455555 88888887754110 11111
Q ss_pred EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 763 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 763 ~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
.+...+..+..+....+...+++.+..|.+..+++..
T Consensus 241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 2222333555444444456688888888777666644
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=93.81 E-value=9.1 Score=41.62 Aligned_cols=229 Identities=10% Similarity=0.101 Sum_probs=115.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC--------c--eeEEeec-cccceEEEEEcCCCCeEEEEEeCCCcEEE
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPD--------Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~--------~--~~~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~v 667 (837)
.|..|+-. ....+.-..||.|+.|-..... . ....+.. ....+..++++.-..+. +.-..||.|+.
T Consensus 54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~-~al~~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHC-LALSSEGEVYS 130 (389)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEE-EEEETTSCEEE
T ss_pred ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeE-EEEcCCCCEEE
Confidence 34455433 3455666788999999643211 0 0111111 12234445555443433 35566999999
Q ss_pred EECCCCe---------e--eeEEecCC--CeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------eEEEEEcC-
Q 003236 668 WSINNGS---------C--AGVFKCQS--GATQMRFQPRLGRILAAAIENYISILDVETQ-----------VCRLKLQG- 722 (837)
Q Consensus 668 wDl~t~~---------~--i~~~~~~~--~i~sl~~sp~g~~llags~dg~I~iwDl~s~-----------~~~~~l~~- 722 (837)
|-....- . ...+.... .|..++ ....+.++...+|.|+.|-.... .....+..
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va--~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~ 208 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA--AGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEAL 208 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE--ECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE--eCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEeccc
Confidence 9654210 1 11111112 344443 34567778888999999965320 11112221
Q ss_pred CCCCEEEEEEcCC-CCEEEEEeCCeEEEEEcCCCC------Cc-eeE-EEee-cCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003236 723 HKNQVHSVCWNTS-GEYLASVSDELVRVWSIGSGS------KG-ECI-HELS-CTGNKFHSCVFHPTFPSLLVIGCYETL 792 (837)
Q Consensus 723 h~~~V~sl~~spd-g~~LasgsDg~I~IwDl~s~~------~~-~~i-~~~~-~~~~~I~sv~fspdg~~L~sgs~dg~I 792 (837)
....|..++.... ...++...|+.|+.|-..... .. ... ..+. .....|..++.- ..+.++...++.|
T Consensus 209 ~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v 286 (389)
T 3kci_A 209 QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAV 286 (389)
T ss_dssp TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCE
T ss_pred CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeE
Confidence 2345777776542 334444459999999754311 00 111 1111 122245555543 3456667888899
Q ss_pred EEEECCCC---------c---EEEecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 793 ELWNMTEN---------K---TLTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 793 ~IwDl~s~---------~---~~~l~~-h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
+.|-.... . +..+.. ....|..|+.. ..+.+....||.|+.|
T Consensus 287 ~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 287 YTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred EEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence 99965321 1 112221 12346666543 3445555788888888
No 363
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.51 E-value=1.6 Score=45.69 Aligned_cols=240 Identities=13% Similarity=0.028 Sum_probs=121.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCceeEEe
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~~~~~~ 636 (837)
.|..|+..... .++. . ||.|+.|-......+..-......|..|+...+.. ++. . ||.|+.|-...... +-.-
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq-lg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ-TTVP 97 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST-TCCC
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC-CCCC
Confidence 36666655432 2333 4 88888886543211111111233577777654432 333 4 89999998664322 1111
Q ss_pred eccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCCe
Q 003236 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQV 715 (837)
Q Consensus 637 ~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~-~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~~ 715 (837)
..-...|..|+.... +.+ .-. ||.|+.|-.... .+-........|..++.-. .+.++.. +|.|+.|-....-
T Consensus 98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~--~~~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEEE-TTEEEEEECCTTS
T ss_pred cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEccc--CEEEEEE-CCEEEEecCCCCC
Confidence 111246777776643 233 334 899999977542 2211111234455555433 3344444 7888888665321
Q ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003236 716 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW 795 (837)
Q Consensus 716 ~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~Iw 795 (837)
.+-.-......|..|+...+.. ++. .||.|+.|-.......- .-......|..++.... +.++.. |+.|+.|
T Consensus 171 qlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~--h~~al~-~g~v~~w 242 (282)
T 3qhy_B 171 QTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEW--YSLALK-NGKVIAW 242 (282)
T ss_dssp TTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSS--CEEEEE-TTEEEEE
T ss_pred CCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCC--EEEEEE-CCEEEEe
Confidence 1100001134577777654433 344 69999999765432110 00011234555554433 334444 8999999
Q ss_pred ECCCCcEEEeccCCCCeeEEEEeCCC
Q 003236 796 NMTENKTLTLSAHDKLVSSLAASTVN 821 (837)
Q Consensus 796 Dl~s~~~~~l~~h~~~V~sla~spdg 821 (837)
-......+.+ ...|..|+.....
T Consensus 243 G~n~~gq~~v---~~~v~~iaaG~~h 265 (282)
T 3qhy_B 243 GSSRTAPSSV---QSGVSSIEAGPNA 265 (282)
T ss_dssp STTCCCCGGG---SSCEEEEEECSSC
T ss_pred cCCCCccccC---CCCcEEEEECcCe
Confidence 7655433322 3457777765443
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.62 E-value=7.6 Score=46.10 Aligned_cols=222 Identities=10% Similarity=0.064 Sum_probs=112.8
Q ss_pred EEE-EcCCCCEEEEE-e----CCCeEEEEEcCCCCceeEEeec-ccc------ceEEEEEcCCCCeEEEEEe--------
Q 003236 602 DVR-FSPSLSRLATS-S----ADRTVRVWDTENPDYSLRTFTG-HST------TVMSLDFHPSKEDLLCSCD-------- 660 (837)
Q Consensus 602 ~l~-fspdg~~Latg-s----~Dg~I~IWDl~~~~~~~~~~~~-h~~------~V~sl~fspdg~~llasgs-------- 660 (837)
.+. ++|++++++.+ | .-..|+++|+.+++..-..+.. -.. ....++|. +++.++++..
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCBCT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCcCc
Confidence 344 78888876654 2 2347999999987642222220 000 11344776 3355555421
Q ss_pred --CCCcEEEEECCCCe--eeeEEec--CCCeeEEEEecCCCE-----EEEEEcC---CeEEEEECCC--CeEEEEEcCCC
Q 003236 661 --NNSEIRYWSINNGS--CAGVFKC--QSGATQMRFQPRLGR-----ILAAAIE---NYISILDVET--QVCRLKLQGHK 724 (837)
Q Consensus 661 --~Dg~I~vwDl~t~~--~i~~~~~--~~~i~sl~~sp~g~~-----llags~d---g~I~iwDl~s--~~~~~~l~~h~ 724 (837)
....|+.|.+-+.. -...+.. ..-......+.++++ ++..+.+ ..+.+.|... ++ ...+....
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~ 290 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPS 290 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCC
Confidence 12468888887642 2233332 222334445566652 3333322 4567777653 33 22332222
Q ss_pred CCEEEEEEcCCCCEEEEE-----------eCCeEEEEEcCCCCCc----eeEEE-e-ecCCCceEEEEEeCCCCEEEEEE
Q 003236 725 NQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLVIG 787 (837)
Q Consensus 725 ~~V~sl~~spdg~~Lasg-----------sDg~I~IwDl~s~~~~----~~i~~-~-~~~~~~I~sv~fspdg~~L~sgs 787 (837)
.. .+..+.++.+++.. ..+.|.+.|+.+.... ..... + ......+..+.+..+ ..+++..
T Consensus 291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 21 12334455555532 1557889998764210 11111 2 223446778888876 4556666
Q ss_pred cCC--eEEEEECCCCc--EEE-ec-cCCCCeeEEEEeCCCC-EEEEEE
Q 003236 788 CYE--TLELWNMTENK--TLT-LS-AHDKLVSSLAASTVNG-MVASAS 828 (837)
Q Consensus 788 ~dg--~I~IwDl~s~~--~~~-l~-~h~~~V~sla~spdg~-~LaSgs 828 (837)
.++ .|+++|+.++. ... +. ...+.|..+.+++++. ++++.+
T Consensus 368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s 415 (711)
T 4hvt_A 368 DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE 415 (711)
T ss_dssp ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence 666 67888877664 222 21 1134566666667665 444443
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=92.57 E-value=12 Score=39.45 Aligned_cols=232 Identities=9% Similarity=0.065 Sum_probs=127.9
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCeEEE---------EeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---CCC--
Q 003236 565 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-- 630 (837)
Q Consensus 565 pdg~~Lasgs~Dg~I~VWd~~t~~~~~---------~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---~~~-- 630 (837)
|+..++++.+.+|.|+--.+.+.+... .+.. .+.+..+........|+..+..|.++-+... ...
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 345678888999999877765543221 1222 2445455555556677777888887666543 111
Q ss_pred ---ceeE---EeeccccceEEEEEcC--CCCeEEEEEeCCCcEEEEECCC-------CeeeeEEecCCCeeEEEEecCCC
Q 003236 631 ---YSLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPRLG 695 (837)
Q Consensus 631 ---~~~~---~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~~~~~i~sl~~sp~g~ 695 (837)
.++. .+. ....|.++...+ +....++..+.+|.++...+.. +.....+.....+..+.......
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 1111 112 234455554321 1233455778899999987642 22222233345666666666667
Q ss_pred EEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------Cce
Q 003236 696 RILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGE 759 (837)
Q Consensus 696 ~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~spdg~~Lasgs-Dg~I~IwDl~s~~------~~~ 759 (837)
.++..+.+|.+..++... |.....+. ....|.++....++..|++.+ .|.++-.++..-. ...
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 899999999988887642 22222232 345666666555555566666 8888888774321 111
Q ss_pred eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 760 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 760 ~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
....+......+..+....+...|+..+.+|.+.-+++..
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 1222333335555555544556677888888776666644
No 366
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=92.49 E-value=14 Score=40.07 Aligned_cols=233 Identities=10% Similarity=0.052 Sum_probs=132.8
Q ss_pred EcCCCCEEEEEECCCcEEEEeCCC---------CeEEEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---C-
Q 003236 563 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---P- 629 (837)
Q Consensus 563 fSpdg~~Lasgs~Dg~I~VWd~~t---------~~~~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~---~- 629 (837)
+-++..++++.+.+|.|+--.+.. +..-..++ ..+.+..+........|+..+..|.++-+.... .
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778999999999998765432 22333444 355666666666667788888888877665431 1
Q ss_pred ----CceeE---EeeccccceEEEEEcC--CCCeEEEEEeCCCcEEEEECCC-------CeeeeEEecCCCeeEEEEecC
Q 003236 630 ----DYSLR---TFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQPR 693 (837)
Q Consensus 630 ----~~~~~---~~~~h~~~V~sl~fsp--dg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~~~~~i~sl~~sp~ 693 (837)
...+. .+. ....|.++.... +....++.++..|.++...+.. +.....+.....+..+.....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Confidence 11111 122 234555554332 1233556788899999887643 222223333455666666666
Q ss_pred CCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcC------------------------------
Q 003236 694 LGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT------------------------------ 734 (837)
Q Consensus 694 g~~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~sp------------------------------ 734 (837)
...++..+..|.+..|+... |.....+. ....|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 67899999999888887542 22222222 234455554443
Q ss_pred -----CCCEEEEEe-CCeEEEEEcCCCCC----ceeEE--EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 735 -----SGEYLASVS-DELVRVWSIGSGSK----GECIH--ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 735 -----dg~~Lasgs-Dg~I~IwDl~s~~~----~~~i~--~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
++..|++.+ .|..+...+..-.. ..-+. .+....+.+..+.+..+...|+..+..|.+.-..+.
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~ 315 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS 315 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence 344666666 88888887753211 11111 222233455555555555677778888866666553
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=92.49 E-value=11 Score=39.21 Aligned_cols=197 Identities=10% Similarity=-0.018 Sum_probs=111.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEE---EcCCCCceeEEeeccccceEEEEEcCC-CCeEEEEEeCCCcEEEEECCCC
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG 673 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IW---Dl~~~~~~~~~~~~h~~~V~sl~fspd-g~~llasgs~Dg~I~vwDl~t~ 673 (837)
+.+..+.......+|+..+.+|.++-- ++......- +......|..+.. .+ .+..++..+.+|.|+...+...
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC--CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc--cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 345444444444556666667765543 332211100 1223445655544 32 2346668888999999887543
Q ss_pred ------eeeeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC---------CeEEEEEcCCCCCEEEEEEcCCCCE
Q 003236 674 ------SCAGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEY 738 (837)
Q Consensus 674 ------~~i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s---------~~~~~~l~~h~~~V~sl~~spdg~~ 738 (837)
.....+.....+..+........++..+..|.+..+.... |.....+.. ...|.++...+++.+
T Consensus 101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY 179 (276)
T ss_dssp TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence 2222333445666666666667899999999988887532 222223332 355666655555556
Q ss_pred EEEEe-CCeEEEEEcCCCCC----ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EECCC
Q 003236 739 LASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE 799 (837)
Q Consensus 739 Lasgs-Dg~I~IwDl~s~~~----~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~I--wDl~s 799 (837)
++..+ .|.++...+..-.. ..-+..+ .....+..+....+...++..+.+|.+.. ++..+
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 66666 88888888753211 1122222 23445555544445557888888887777 77643
No 368
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.46 E-value=0.82 Score=52.08 Aligned_cols=126 Identities=14% Similarity=0.174 Sum_probs=85.8
Q ss_pred ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC------Cee-------eeEEecCCCeeEEEEecCCCEEEEEEcCCeE
Q 003236 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN------GSC-------AGVFKCQSGATQMRFQPRLGRILAAAIENYI 706 (837)
Q Consensus 640 ~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t------~~~-------i~~~~~~~~i~sl~~sp~g~~llags~dg~I 706 (837)
......+.++|||+++++++-.+.+|.++|+++ ++. +......-+....+|.++|..+.+..-|..|
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence 345667899999999999999999999999874 221 2333345678889999998444444579999
Q ss_pred EEEECCCC----------eEEEEEcCCCCCEEEEEE------cCCCCEEEEEe----CC----------eEEEEEcCCCC
Q 003236 707 SILDVETQ----------VCRLKLQGHKNQVHSVCW------NTSGEYLASVS----DE----------LVRVWSIGSGS 756 (837)
Q Consensus 707 ~iwDl~s~----------~~~~~l~~h~~~V~sl~~------spdg~~Lasgs----Dg----------~I~IwDl~s~~ 756 (837)
..|++... ..+..+..|-.+-. +.- .+||++|++.. |. .-.++|+.. .
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH-~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG-d 479 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGH-LHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG-D 479 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-EEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS-S
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcc-cccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC-C
Confidence 99998753 45556665544333 322 57899998875 44 347788854 3
Q ss_pred CceeEEEeecC
Q 003236 757 KGECIHELSCT 767 (837)
Q Consensus 757 ~~~~i~~~~~~ 767 (837)
+.+.++.....
T Consensus 480 kM~lv~D~P~~ 490 (638)
T 3sbq_A 480 EMKLVHDGPTF 490 (638)
T ss_dssp SCEEEEEEEES
T ss_pred ceEEEecCCCC
Confidence 44566555443
No 369
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=92.11 E-value=16 Score=43.75 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEEcCC-CCEEEEEeCCCe----E
Q 003236 555 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V 621 (837)
Q Consensus 555 ~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-------~~~I~~l~fspd-g~~Latgs~Dg~----I 621 (837)
.+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+ ...|.+|+++|. ...++.+..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 457999999995 34666677777776665 334433333322 246999999984 344555443211 3
Q ss_pred EEEEcCCCCceeEEeecc---------ccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-------cCCCe
Q 003236 622 RVWDTENPDYSLRTFTGH---------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-------CQSGA 685 (837)
Q Consensus 622 ~IWDl~~~~~~~~~~~~h---------~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-------~~~~i 685 (837)
.||.-.++.......... ...+..++++|.....++.+...+.|. .....|+.-..+. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 455444433222222110 113567888886555565665344332 2222232222221 12457
Q ss_pred eEEEEecC-CCEEEEEEcC
Q 003236 686 TQMRFQPR-LGRILAAAIE 703 (837)
Q Consensus 686 ~sl~~sp~-g~~llags~d 703 (837)
..+.++|. .+.++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 78888884 4467776655
No 370
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=90.97 E-value=20 Score=38.81 Aligned_cols=225 Identities=9% Similarity=0.010 Sum_probs=118.9
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCC-------C-CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEE---CCC-
Q 003236 605 FSPSLSRLATSSADRTVRVWDTEN-------P-DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS---INN- 672 (837)
Q Consensus 605 fspdg~~Latgs~Dg~I~IWDl~~-------~-~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwD---l~t- 672 (837)
+-++..++++.+.+|.|+--.+.. + ......+. ....+..+........+++ .+..|.++.+. +..
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~-fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLT-FTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEE-EETTSEEEEEEGGGSCBC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEE-EeCCCeEEEEEHHHCcCC
Confidence 346778999999999999865532 1 11112222 3445555555544454554 44467666554 322
Q ss_pred -----Ceeee---EEecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEcC
Q 003236 673 -----GSCAG---VFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT 734 (837)
Q Consensus 673 -----~~~i~---~~~~~~~i~sl~~sp---~g~~llags~dg~I~iwDl~s-------~~~~~~l~~h~~~V~sl~~sp 734 (837)
|..+. .+.....|..+.... .+.+++.++..|.++...+.. +.....+.. ...+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 22221 122345566655442 456899999999999887542 222233433 34455554444
Q ss_pred CCC-EEEEEeCCeEEEEEcCCCC------CceeEEEeecCCCceEEEEEeC-----------------------------
Q 003236 735 SGE-YLASVSDELVRVWSIGSGS------KGECIHELSCTGNKFHSCVFHP----------------------------- 778 (837)
Q Consensus 735 dg~-~LasgsDg~I~IwDl~s~~------~~~~i~~~~~~~~~I~sv~fsp----------------------------- 778 (837)
... +++...+|.+..|+...-. .......+. .+..|.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~ 238 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVI 238 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC---------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccc
Confidence 444 4444448887777754311 011111121 234455444443
Q ss_pred ------CCCEEEEEEcCCeEEEEECCCCcE--------E--EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003236 779 ------TFPSLLVIGCYETLELWNMTENKT--------L--TLSAHDKLVSSLAASTVNGMVASASHDKCV 833 (837)
Q Consensus 779 ------dg~~L~sgs~dg~I~IwDl~s~~~--------~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I 833 (837)
++..|++.+..|..+...+..-.. . .+....+.+..+.+..+...|+..+..|.+
T Consensus 239 ~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 239 DVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTL 309 (370)
T ss_dssp --------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCE
T ss_pred ccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeE
Confidence 456899999999888887643221 1 222333455555444444455555566654
No 371
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=90.71 E-value=19 Score=38.20 Aligned_cols=194 Identities=12% Similarity=0.028 Sum_probs=106.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEe---CC------CCeEEEE---eccCCCCeEEEEEcC---CCCEEEEEeCCCeE
Q 003236 557 KVESCHFSPDGKLLATGGHDKKAVLWC---TE------SFTVKST---LEEHTQWITDVRFSP---SLSRLATSSADRTV 621 (837)
Q Consensus 557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd---~~------t~~~~~~---l~~h~~~I~~l~fsp---dg~~Latgs~Dg~I 621 (837)
.+..+........|+.-+..|.++-.. +. .|..+.. +. ....|.++...+ +..++++++.+|.|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 344444444455666666777766554 32 2333211 22 234555554433 57899999999999
Q ss_pred EEEEcCCCC------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC--C---------CeeeeEEecCCC
Q 003236 622 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN--N---------GSCAGVFKCQSG 684 (837)
Q Consensus 622 ~IWDl~~~~------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~--t---------~~~i~~~~~~~~ 684 (837)
+...+..-. .....+.. ...+..+........++ ..+..|.+..+.+. . |.....+.....
T Consensus 122 Kr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il-l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~ 199 (327)
T 3uc1_A 122 KKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL-LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR 199 (327)
T ss_dssp EEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE-EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC
T ss_pred EEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE-EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE
Confidence 998875411 11112233 34455544444445444 45568888877766 2 111122333456
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCC-------eEEE--EEcCCCCCEEEEEEcC-CCCEEEEEeCCeEEEEEcC
Q 003236 685 ATQMRFQPRLGRILAAAIENYISILDVETQ-------VCRL--KLQGHKNQVHSVCWNT-SGEYLASVSDELVRVWSIG 753 (837)
Q Consensus 685 i~sl~~sp~g~~llags~dg~I~iwDl~s~-------~~~~--~l~~h~~~V~sl~~sp-dg~~LasgsDg~I~IwDl~ 753 (837)
|..+...+.+.+++.++..|.++...+..- +-+. .+..-.+.+..+.... +..+++...+|.+..++..
T Consensus 200 Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 200 LLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 777777667778999999999988875421 1122 2222133455544433 3444454557777777664
No 372
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=90.32 E-value=20 Score=37.69 Aligned_cols=223 Identities=10% Similarity=0.028 Sum_probs=115.5
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCce--------eEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC---CC----
Q 003236 608 SLSRLATSSADRTVRVWDTENPDYS--------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN---- 672 (837)
Q Consensus 608 dg~~Latgs~Dg~I~IWDl~~~~~~--------~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t---- 672 (837)
+..++++.+.+|.|+--.+.+-... ...+..+ +.+..+........++ ..+..|.++-+.. ..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCCC
Confidence 4567888899999987766532110 0112222 3333333333334444 3444676655543 22
Q ss_pred --Ceeee---EEecCCCeeEEEEe---cCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEcC-CC
Q 003236 673 --GSCAG---VFKCQSGATQMRFQ---PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNT-SG 736 (837)
Q Consensus 673 --~~~i~---~~~~~~~i~sl~~s---p~g~~llags~dg~I~iwDl~s-------~~~~~~l~~h~~~V~sl~~sp-dg 736 (837)
|..+. .+.....|..+... .++.+++.++..|.++...+.. +.....+..+ +.+..+.... +.
T Consensus 80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 22211 12334456655443 3456899999999999887642 2222334434 4555554444 44
Q ss_pred CEEEEEeCCeEEEEEcCCCCC------ceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCCc--------E
Q 003236 737 EYLASVSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------T 802 (837)
Q Consensus 737 ~~LasgsDg~I~IwDl~s~~~------~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~~--------~ 802 (837)
.+++..++|.+..++...-.. ......+. .+..|..+....++..|++.+..|.++-.++.... .
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 455555588888887643211 11111222 24556666655566779999999988888763321 1
Q ss_pred E--EeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 803 L--TLSAHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 803 ~--~l~~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
. .+..-.+.+..+....+...|+..+.+|.+.
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i 271 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 271 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence 1 2222334555554444445455556666543
No 373
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=90.31 E-value=24 Score=38.58 Aligned_cols=226 Identities=4% Similarity=-0.008 Sum_probs=117.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc-----------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEE
Q 003236 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDY-----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667 (837)
Q Consensus 599 ~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~-----------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~v 667 (837)
.|..|+.. ..+.+.-..||.|+.|-...... ..-........|..|+... ...+.-..||.|+.
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEEE
Confidence 46666654 44666667899999996543110 0011111234566666653 23334567899999
Q ss_pred EEC--CC-Cee--------eeEEec--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC--------------------
Q 003236 668 WSI--NN-GSC--------AGVFKC--QSGATQMRFQPRLGRILAAAIENYISILDVETQ-------------------- 714 (837)
Q Consensus 668 wDl--~t-~~~--------i~~~~~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-------------------- 714 (837)
|-. .. +.+ ...... ...|..++. ...+.++...+|.|+.|-....
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 985 22 221 111111 223444443 4467778888999999953321
Q ss_pred ---eEEEEEcCCCCCEEEEEEcCCCCEEEE-EeCCeEEEEEcCCCC--------CceeEEEeecCCCceEEEEEeCCCCE
Q 003236 715 ---VCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPS 782 (837)
Q Consensus 715 ---~~~~~l~~h~~~V~sl~~spdg~~Las-gsDg~I~IwDl~s~~--------~~~~i~~~~~~~~~I~sv~fspdg~~ 782 (837)
.+..........|..|+..... .++. ..++.|+.|-..... ..............|..++. ...+
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~~~-~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~h 305 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATNYC-TFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHH 305 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEETTE-EEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSE
T ss_pred cccCCeEEeecCCccEEEEEECCcE-EEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCe
Confidence 1111111223456666554322 2333 248889999754321 01111112222344554443 3446
Q ss_pred EEEEEcCCeEEEEECCCC---------c----EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 783 LLVIGCYETLELWNMTEN---------K----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 783 L~sgs~dg~I~IwDl~s~---------~----~~~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.++...++.|+.|-.... . +..+......|..|+... .+.+.-..||.|+.|
T Consensus 306 t~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 306 TVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSW 370 (423)
T ss_dssp EEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred EEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEE
Confidence 677788889999965321 1 112222333677777653 334444688999888
No 374
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=90.12 E-value=21 Score=37.62 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=106.1
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCc------ee--EEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC---C--
Q 003236 607 PSLSRLATSSADRTVRVWDTENPDY------SL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---G-- 673 (837)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~~~~~------~~--~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---~-- 673 (837)
++..++++.+.+|.|+-..+..-.. -+ ..+.. ...+..+........++ ..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll-~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLF-MISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCC---
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEE-EEECCCeEEEEEHHHCCCCCc
Confidence 4567889999999999887653211 01 11222 23344444333334444 455678777665531 1
Q ss_pred ----ee---eeEEecCCCeeEEEEec---CCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEcCCC
Q 003236 674 ----SC---AGVFKCQSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSG 736 (837)
Q Consensus 674 ----~~---i~~~~~~~~i~sl~~sp---~g~~llags~dg~I~iwDl~s-------~~~~~~l~~h~~~V~sl~~spdg 736 (837)
.. ...+.....+..+...+ +..+++..+..|.++...+.. +.....+.. .+.+..+....++
T Consensus 84 ~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 11 11122334555554443 467899999999999887743 233333443 4556655554444
Q ss_pred C-EEEEEeCCeEEEEEcCCC----C--CceeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 737 E-YLASVSDELVRVWSIGSG----S--KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 737 ~-~LasgsDg~I~IwDl~s~----~--~~~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
. +++++.+|.+..+.+..- . .......+. .+..+..+....++..|++.+..|.++.+++..
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 4 444444998888887541 1 111222222 245566666666667899999999988888754
No 375
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=89.58 E-value=41 Score=40.24 Aligned_cols=144 Identities=11% Similarity=0.150 Sum_probs=72.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeEEeecc-------ccceEEEEEcCCCCeEEEEEeCCCc----
Q 003236 597 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE---- 664 (837)
Q Consensus 597 ~~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h-------~~~V~sl~fspdg~~llasgs~Dg~---- 664 (837)
...|.+|+++|. ...++++...+.|...+=. ......+..+ ...|.+|+++|.....++.+..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg--G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~ 91 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG--TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW 91 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT--TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC--CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence 468999999985 4566777777766554422 2222222221 2469999999864444444432211
Q ss_pred EEEE-ECCCCeeeeEEecC----------CCeeEEEEecCC-CEEEEEEcCCeEEEEECCCC---eEEEEEc---CCCCC
Q 003236 665 IRYW-SINNGSCAGVFKCQ----------SGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQ---GHKNQ 726 (837)
Q Consensus 665 I~vw-Dl~t~~~i~~~~~~----------~~i~sl~~sp~g-~~llags~dg~I~iwDl~s~---~~~~~l~---~h~~~ 726 (837)
-.|| ....|+.-..+... ..+..++++|.. +.++++...+.|.. ....+ +.+..+. .....
T Consensus 92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence 2233 33334333222211 124568888754 45555553443322 22222 2221111 11245
Q ss_pred EEEEEEcCC-CCEEEEEe
Q 003236 727 VHSVCWNTS-GEYLASVS 743 (837)
Q Consensus 727 V~sl~~spd-g~~Lasgs 743 (837)
+..|.++|. ...|+++.
T Consensus 171 ~~~i~~~p~~~~~~~~~~ 188 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASA 188 (789)
T ss_dssp EEEEEECTTSTTCEEEEE
T ss_pred eEEEEECCCCCCEEEEEE
Confidence 888999884 34454444
No 376
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=87.71 E-value=34 Score=36.95 Aligned_cols=234 Identities=10% Similarity=0.057 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCC-----------CeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 003236 558 VESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~IWD 625 (837)
|..|+.. ....+.-..||.|+.|-... ......+.. ....+..++++......+.-..||.|+.|-
T Consensus 55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 4455443 33455556788888885321 111222222 223455566766666777778899999996
Q ss_pred cCCCC---------c-eeEEeec-cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---------eee--eEEec--
Q 003236 626 TENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---------SCA--GVFKC-- 681 (837)
Q Consensus 626 l~~~~---------~-~~~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~---------~~i--~~~~~-- 681 (837)
..... . ....+.. ....|..|+... ...+.-..+|.|+.|-.... ... ..+..
T Consensus 133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 53211 0 0111111 122566666543 23334556899999975431 011 11111
Q ss_pred CCCeeEEEEecCCCEEEEEEcCCeEEEEECCC----------C-eEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCeEEE
Q 003236 682 QSGATQMRFQPRLGRILAAAIENYISILDVET----------Q-VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELVRV 749 (837)
Q Consensus 682 ~~~i~sl~~sp~g~~llags~dg~I~iwDl~s----------~-~~~~~l~~-h~~~V~sl~~spdg~~LasgsDg~I~I 749 (837)
...+..++......+.++...++.|+.|-... . .....+.. ....|..|+... ...++...||.|+.
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~-~hs~alt~~G~v~~ 288 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGS-QFSVALTKSGAVYT 288 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEET-TEEEEEETTSCEEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCC-CEEEEEeCCCeEEE
Confidence 23455555544346777888899999996432 1 11122222 122466665532 22344445899999
Q ss_pred EEcCCCC------Ccee--EEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCC
Q 003236 750 WSIGSGS------KGEC--IHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 799 (837)
Q Consensus 750 wDl~s~~------~~~~--i~~~~-~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s 799 (837)
|-..... .... ...+. .....|..++. ...+.++...++.|+.|-...
T Consensus 289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 9764310 0011 11111 12234555544 344667778899999997643
No 377
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=87.55 E-value=28 Score=35.89 Aligned_cols=194 Identities=11% Similarity=0.020 Sum_probs=106.7
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEE---eCCCCeEEEEeccCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCC-
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD- 630 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VW---d~~t~~~~~~l~~h~~~I~~l~fsp-dg~~Latgs~Dg~I~IWDl~~~~- 630 (837)
+.|.++.......+|+.-+.+|.++-- ++........+. ..+.|..+.... +..++++.+.+|.|+...+.+-.
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 445555544445566666677876643 333222111133 345666664421 46789999999999999876421
Q ss_pred ----ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC---------CeeeeEEecCCCeeEEEEecCCCEE
Q 003236 631 ----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVFKCQSGATQMRFQPRLGRI 697 (837)
Q Consensus 631 ----~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t---------~~~i~~~~~~~~i~sl~~sp~g~~l 697 (837)
.....+. ..+.+..+........++ ..+..|.++.++... |.....+.....+..+....++..+
T Consensus 103 ~~~G~~~i~lk-egD~l~~~~~~~~~~~il-l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 103 KAQGMPIIKLT-EGDEVVSIASSVDETHIL-LFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYL 180 (276)
T ss_dssp CSTTEECSCCC-TTCCEEEEEECCSSCEEE-EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEE
T ss_pred hcCCeEEEecC-CCCEEEEEEEeCCCCEEE-EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEE
Confidence 1111222 234555555554444444 556688888776532 2222223334567766666667789
Q ss_pred EEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEE-cCCCCEEEEEeCCeEEE--EEcC
Q 003236 698 LAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCW-NTSGEYLASVSDELVRV--WSIG 753 (837)
Q Consensus 698 lags~dg~I~iwDl~s-------~~~~~~l~~h~~~V~sl~~-spdg~~LasgsDg~I~I--wDl~ 753 (837)
+..+..|.++...+.. ++-+..+ ...+.+..+.. ..+..+++...+|.+.. ++..
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 9999999988887642 1222222 22344544433 33334444444776666 6654
No 378
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=85.15 E-value=42 Score=35.50 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=116.8
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCC---CceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEEC---CC------Ce
Q 003236 607 PSLSRLATSSADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN------GS 674 (837)
Q Consensus 607 pdg~~Latgs~Dg~I~IWDl~~~---~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl---~t------~~ 674 (837)
|+..++++.+.+|.|+--.+..- ......+... +.+..+........++ ..+..|.++-+.. .. |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll-~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLL-LFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEE-EEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEE-EEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 56678889999999987765411 1101122222 3343433333334455 3444777665544 21 22
Q ss_pred eee---EEecCCCeeEEEEecC---CCEEEEEEcCCeEEEEECCC--------CeEEEEEcCCCCCEEEEEEcCCC-CEE
Q 003236 675 CAG---VFKCQSGATQMRFQPR---LGRILAAAIENYISILDVET--------QVCRLKLQGHKNQVHSVCWNTSG-EYL 739 (837)
Q Consensus 675 ~i~---~~~~~~~i~sl~~sp~---g~~llags~dg~I~iwDl~s--------~~~~~~l~~h~~~V~sl~~spdg-~~L 739 (837)
.+. .+.....|..+...++ +.+++.++..|.++...+.. +.....+... +.+..+...... .++
T Consensus 81 ~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 81 HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 111 1222344665544332 56899999999999987642 2222233333 455555554444 444
Q ss_pred EEEeCCeEEEEEcCCC----CCceeEEEeec-CCCceEEEEEeCCCC-EEEEEEcCCeEEEEECCCCc--------EEE-
Q 003236 740 ASVSDELVRVWSIGSG----SKGECIHELSC-TGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENK--------TLT- 804 (837)
Q Consensus 740 asgsDg~I~IwDl~s~----~~~~~i~~~~~-~~~~I~sv~fspdg~-~L~sgs~dg~I~IwDl~s~~--------~~~- 804 (837)
+.+.+|.+..+....- ....-+..+.- .+..|.++...+++. .|++.+..|..+..++..-. ...
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 4455898888876431 11111222221 234566665544455 79999999988877764421 111
Q ss_pred --eccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003236 805 --LSAHDKLVSSLAASTVNGMVASASHDKCVK 834 (837)
Q Consensus 805 --l~~h~~~V~sla~spdg~~LaSgs~DG~I~ 834 (837)
+......+..+....++..|+..+..|.+.
T Consensus 240 ~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~i 271 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQDSDTIYLQTEKSFIE 271 (323)
T ss_dssp CCCSSSCCCEEEEEEECTTCEEEEEETTSCEE
T ss_pred eecCCCCceEEEEEEeCCCCeEEEEeCCCeEE
Confidence 112222455443333344555666666653
No 379
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=84.03 E-value=75 Score=37.54 Aligned_cols=103 Identities=12% Similarity=0.087 Sum_probs=56.6
Q ss_pred CeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEeccC-------CCCeEEEEEcC-CCCEEEEEeCC-------Ce
Q 003236 557 KVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSP-SLSRLATSSAD-------RT 620 (837)
Q Consensus 557 ~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~h-------~~~I~~l~fsp-dg~~Latgs~D-------g~ 620 (837)
.|..|+++|.. ..|+++...+.|+.++ +.++.-..+..+ ...|.+|+++| +...|+++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999963 4555566667666665 333333333222 24599999998 33444444321 12
Q ss_pred EEEEEcCCCCceeEEee-ccc--------cceEEEEEcCCCCeEEEEEe
Q 003236 621 VRVWDTENPDYSLRTFT-GHS--------TTVMSLDFHPSKEDLLCSCD 660 (837)
Q Consensus 621 I~IWDl~~~~~~~~~~~-~h~--------~~V~sl~fspdg~~llasgs 660 (837)
..||.-.++........ ... ..+.+|+++|.....++.+.
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~ 151 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGT 151 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEEC
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEee
Confidence 45666554432222221 111 12467999987655555555
No 380
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=83.58 E-value=54 Score=35.56 Aligned_cols=267 Identities=9% Similarity=0.064 Sum_probs=132.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-----------CeEEEEecc-CCCCeEEEEEcCCCCEEEEEeCC-CeEE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD-RTVR 622 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~~~~l~~-h~~~I~~l~fspdg~~Latgs~D-g~I~ 622 (837)
..|..|+.-. ...+.-..||.|+.|-... ......+.. ....|..|+...+ +.+....| +.|+
T Consensus 16 ~~v~~ia~G~--~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAGA--SHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEECS--SEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTEEE
T ss_pred cceEEEecCC--CeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCEEE
Confidence 4566666543 3444556788888884322 111222221 2235777776533 33333445 5999
Q ss_pred EEEcCCCC--------cee--EEeec-cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---------ee--eEEe
Q 003236 623 VWDTENPD--------YSL--RTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------CA--GVFK 680 (837)
Q Consensus 623 IWDl~~~~--------~~~--~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~---------~i--~~~~ 680 (837)
.|-..... ... ..+.. ....|..|+... ...+.-..+|.|+.|-....- .. ..+.
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~---~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGD---SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEECh---hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99643210 000 11111 223577776643 233445678999999764311 11 1111
Q ss_pred c--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC----------eE-EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCe
Q 003236 681 C--QSGATQMRFQPRLGRILAAAIENYISILDVETQ----------VC-RLKLQG-HKNQVHSVCWNTSGEYLASVSDEL 746 (837)
Q Consensus 681 ~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~----------~~-~~~l~~-h~~~V~sl~~spdg~~LasgsDg~ 746 (837)
. ...|..++ ....+.++...+|.|+.|-.... .. ...+.. ....|..|+... ...++...+|.
T Consensus 169 ~~~~~~i~~va--~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~-~ht~~l~~~G~ 245 (406)
T 4d9s_A 169 AFEGIRIKMVA--AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW-RHTISVSYSGA 245 (406)
T ss_dssp GGTTCCEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS-SEEEEEETTCC
T ss_pred ccCCCcEEEEe--cCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC-CcEEEEcCCCC
Confidence 1 12344444 34467777888999999964321 11 111111 224566665432 22344445889
Q ss_pred EEEEEcCCCCC------c-eeE-EEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEECCCC-c-----------EEEe
Q 003236 747 VRVWSIGSGSK------G-ECI-HELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-K-----------TLTL 805 (837)
Q Consensus 747 I~IwDl~s~~~------~-~~i-~~~~-~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~s~-~-----------~~~l 805 (837)
|+.|-...... . ... ..+. .....|..++. ...+.++...++.|+.|-.... . +..+
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 99997543211 0 111 1111 11233544443 3446677778889999964321 0 1111
Q ss_pred c-cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 806 S-AHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 806 ~-~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
. .....|..|+.. ..+.+.-..||.|+.|
T Consensus 324 ~~~~~~~v~~va~G--~~hs~alt~~G~v~~w 353 (406)
T 4d9s_A 324 RFPDDQKVVQVSCG--WRHTLAVTERNNVFAW 353 (406)
T ss_dssp CCGGGCCEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred eccCCCcEEEEEeC--CCeEEEEeCCCCEEEe
Confidence 1 123356666543 3344555678888887
No 381
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=83.03 E-value=0.52 Score=39.87 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003236 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (837)
Q Consensus 10 ~~l~~yiydyl~k~~~~~~A~~~~~e~~~~~~ 41 (837)
+=||.-|++||..+|+.+++.+|.+|.+++.+
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 35799999999999999999999999988754
No 382
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=82.56 E-value=0.95 Score=38.50 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhcCCCCCC
Q 003236 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTDP 42 (837)
Q Consensus 11 ~l~~yiydyl~k~~~~~~A~~~~~e~~~~~~~ 42 (837)
-+|-.||-||..+|+..+|-+|-+|.++...+
T Consensus 7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 47899999999999999999999999887543
No 383
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.76 E-value=1.4e+02 Score=36.32 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=33.2
Q ss_pred CeeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 003236 684 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (837)
Q Consensus 684 ~i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~ 721 (837)
.+.+++..++..++++.+.|+++++|++.++.++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 36677888888999999999999999999999988754
No 384
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=76.52 E-value=89 Score=33.79 Aligned_cols=165 Identities=7% Similarity=0.080 Sum_probs=91.2
Q ss_pred cEEEEeCCCC--eEEEEecc------CCCCeEEEEEc---CC----CCEEEEEe-CCCeEEEEEcCCCCceeEEee----
Q 003236 578 KAVLWCTESF--TVKSTLEE------HTQWITDVRFS---PS----LSRLATSS-ADRTVRVWDTENPDYSLRTFT---- 637 (837)
Q Consensus 578 ~I~VWd~~t~--~~~~~l~~------h~~~I~~l~fs---pd----g~~Latgs-~Dg~I~IWDl~~~~~~~~~~~---- 637 (837)
+|.+||+.+. +.++++.- ....+.++++. ++ +.+++.+. ..+-|.|+|+.+++. .+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~s-wRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDS-WNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEE-EEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcE-EEEccCCCc
Confidence 6889999998 88877642 23467888887 22 33444443 467899999987653 22221
Q ss_pred ----------cc----ccceEEEEEcCC----CCeEEEEEeCCCcEEEEE---CCCC---eeeeEEecC---CCeeEEEE
Q 003236 638 ----------GH----STTVMSLDFHPS----KEDLLCSCDNNSEIRYWS---INNG---SCAGVFKCQ---SGATQMRF 690 (837)
Q Consensus 638 ----------~h----~~~V~sl~fspd----g~~llasgs~Dg~I~vwD---l~t~---~~i~~~~~~---~~i~sl~~ 690 (837)
+. ...|..|+++|+ ++.+.+..-....++-.. ++.. ..+..+... +....+++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 11 136778888887 555555544333343332 1221 122222222 22334566
Q ss_pred ecCCCEEEEE-EcCCeEEEEECCC-C----eEEEEEc-CCCCCEEEEEEcCCCCEEEEEe
Q 003236 691 QPRLGRILAA-AIENYISILDVET-Q----VCRLKLQ-GHKNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 691 sp~g~~llag-s~dg~I~iwDl~s-~----~~~~~l~-~h~~~V~sl~~spdg~~Lasgs 743 (837)
.+..+.|+.+ -..+.|..|+..+ . ....... ..-..+..+.+..+|.+.+.++
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5444454444 4568999999876 1 1111111 1233577788777776555543
No 385
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=75.91 E-value=1.3e+02 Score=35.41 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=53.9
Q ss_pred CCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCceeEEeecc-------ccceEEEEEcCCC-CeEEEEEeC-C-----
Q 003236 598 QWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSK-EDLLCSCDN-N----- 662 (837)
Q Consensus 598 ~~I~~l~fspd-g~~Latgs~Dg~I~IWDl~~~~~~~~~~~~h-------~~~V~sl~fspdg-~~llasgs~-D----- 662 (837)
+.|..|+++|. ...|+++...+.|..++-. ......+..+ ...|.+|+++|.+ +.+++.++. .
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~--G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPS--TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETT--TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCC--CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 37999999986 3556666666665555433 2222323221 2458999999854 344444431 0
Q ss_pred CcEEEEEC-CCCeeeeEEecC----------CCeeEEEEecCC-CEEEEEEc
Q 003236 663 SEIRYWSI-NNGSCAGVFKCQ----------SGATQMRFQPRL-GRILAAAI 702 (837)
Q Consensus 663 g~I~vwDl-~t~~~i~~~~~~----------~~i~sl~~sp~g-~~llags~ 702 (837)
+...||.- ..|+.-..+... ..+..++++|.. +.++++..
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 12344433 333322222211 123678888854 55666553
No 386
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.24 E-value=81 Score=38.60 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEe
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 593 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l 593 (837)
..|.+++..++..+|++-+.|++++||++.++.++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45788888888899999999999999999999998765
No 387
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=60.73 E-value=1.8e+02 Score=31.20 Aligned_cols=226 Identities=11% Similarity=0.101 Sum_probs=115.7
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCc------------eeEEeeccccceEEEEEcCCCCeEEEEEeCCCcE
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY------------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~~~~------------~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I 665 (837)
..|..|+... .+.+.-..||.|+.|-...... ....+ .....|..|+... ...+.-..||.|
T Consensus 59 ~~i~~va~G~--~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G~---~hs~alt~~G~v 132 (413)
T 1a12_A 59 EDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAGD---SHTAALTDDGRV 132 (413)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEECS---SEEEEEETTSCE
T ss_pred CCeEEEEeCC--CeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecCC---CeEEEEcCCCcE
Confidence 5577776543 3555566899999996543110 00111 1223566666543 233455668999
Q ss_pred EEEEC--CC-Cee-----------eeEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------------
Q 003236 666 RYWSI--NN-GSC-----------AGVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ----------------- 714 (837)
Q Consensus 666 ~vwDl--~t-~~~-----------i~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~----------------- 714 (837)
+.|-. .. +.+ ...+.....|..++. ...+.++...+|.|+.|-....
T Consensus 133 ~~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 210 (413)
T 1a12_A 133 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210 (413)
T ss_dssp EEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGG
T ss_pred EEeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe--cCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccc
Confidence 99975 21 110 111111234544444 3456777788899999965431
Q ss_pred ------eEE-EEEcC----CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC------cee-E-EEeecC-C--CceE
Q 003236 715 ------VCR-LKLQG----HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------GEC-I-HELSCT-G--NKFH 772 (837)
Q Consensus 715 ------~~~-~~l~~----h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~------~~~-i-~~~~~~-~--~~I~ 772 (837)
.+. ..+.. ....|..|+.... ..++...||.|+.|-...... ... . ..+... . ..|.
T Consensus 211 ~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~-hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 211 GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAY-FTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp GHHHHHSCEECCCBCSSCCSBCCEEEEEEETT-EEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred cccccccCceEeeccccccCCccEEEEEeCCC-EEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 010 01100 1245666665432 234444589999997653210 011 1 111111 1 2355
Q ss_pred EEEEeCCCCEEEEEEcCCeEEEEECCC----------CcE-E-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003236 773 SCVFHPTFPSLLVIGCYETLELWNMTE----------NKT-L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 836 (837)
Q Consensus 773 sv~fspdg~~L~sgs~dg~I~IwDl~s----------~~~-~-~l~~h~~~V~sla~spdg~~LaSgs~DG~I~IW 836 (837)
.++. ...+.++...++.|+.|-... ... . ........|..|+.. ..+.+.-..||.|+.|
T Consensus 290 ~ia~--G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G--~~hs~alt~~G~v~~w 361 (413)
T 1a12_A 290 GFSG--GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACG--ASVGYAVTKDGRVFAW 361 (413)
T ss_dssp EEEE--CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEEC--SSEEEEEETTSCEEEE
T ss_pred EEec--ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEEC--cceEEEEeCCCCEEEe
Confidence 4443 344667777889999996432 111 1 222222367666654 3344555678888888
No 388
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=59.58 E-value=1.9e+02 Score=31.05 Aligned_cols=231 Identities=8% Similarity=0.083 Sum_probs=115.5
Q ss_pred CCeEEEEEcCCCCEEEEEECC-CcEEEEeCCCC-----------eEEEEecc-CCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 003236 556 SKVESCHFSPDGKLLATGGHD-KKAVLWCTESF-----------TVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVR 622 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~D-g~I~VWd~~t~-----------~~~~~l~~-h~~~I~~l~fspdg~~Latgs~Dg~I~ 622 (837)
..|..|+...+ +.+.-..| +.|+.|-.... .....+.. ....|..|+.. ..+.+.-..||.|+
T Consensus 68 ~~i~~va~G~~--ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~ 143 (406)
T 4d9s_A 68 HQIVSVTCGAD--HTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQ 143 (406)
T ss_dssp SCEEEEEECSS--EEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCEEEEEeCcc--eEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEE
Confidence 35777776543 33333344 58999953211 11112221 22357777654 34556667899999
Q ss_pred EEEcCCCCc----------eeEEeec-cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe----------ee-eEEe
Q 003236 623 VWDTENPDY----------SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS----------CA-GVFK 680 (837)
Q Consensus 623 IWDl~~~~~----------~~~~~~~-h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~----------~i-~~~~ 680 (837)
.|-...... ....+.. ....|..++.... ..+.-..+|.|+.|-....- .. ..+.
T Consensus 144 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~---hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~ 220 (406)
T 4d9s_A 144 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAE---HTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVT 220 (406)
T ss_dssp EEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSS---EEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECC
T ss_pred EeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCC---eEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEec
Confidence 997543210 0111111 1225666665432 33445678999999754311 01 1111
Q ss_pred c--CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC-----------eEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCe
Q 003236 681 C--QSGATQMRFQPRLGRILAAAIENYISILDVETQ-----------VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDEL 746 (837)
Q Consensus 681 ~--~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~-----------~~~~~l~~-h~~~V~sl~~spdg~~LasgsDg~ 746 (837)
. ...+..++. ...+.++...+|.|+.|-.... .....+.. ....|..|+.- ....++...||.
T Consensus 221 ~~~~~~i~~va~--G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G-~~hs~alt~~G~ 297 (406)
T 4d9s_A 221 STGGEKMSMVAC--GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG-WRHTMALTSDGK 297 (406)
T ss_dssp CSTTCCEEEEEE--CSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-SSEEEEEETTSC
T ss_pred ccCCceEEEEEE--CCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec-CCEEEEEcCCCe
Confidence 1 123444433 3456777788899999864321 11112221 22346666543 223344445889
Q ss_pred EEEEEcCCCCC------c---eeEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 747 VRVWSIGSGSK------G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 747 I~IwDl~s~~~------~---~~i~~~~~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
|+.|-...... . .+..........|..++. ...+.++...++.|+.|=..
T Consensus 298 v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~--G~~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 298 LYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSC--GWRHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp EEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEE--CSSEEEEEETTSCEEEEECC
T ss_pred EEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEe--CCCeEEEEeCCCCEEEecCC
Confidence 99997543210 0 111111112234554443 34466777788899999653
No 389
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=51.78 E-value=1e+02 Score=35.48 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=42.1
Q ss_pred eeEEEEecCCCEEEEEEcC------------CeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEE
Q 003236 685 ATQMRFQPRLGRILAAAIE------------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASV 742 (837)
Q Consensus 685 i~sl~~sp~g~~llags~d------------g~I~iwDl~s~~~~~~l~~h-~~~V~sl~~spdg~~Lasg 742 (837)
.-.|+|++.|+.+++-..+ +.+.+++..+++....+.++ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4578999998855554432 34667777778776666553 5689999999999988765
No 390
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.79 E-value=1.7e+02 Score=33.55 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=42.9
Q ss_pred eeEEEEecCCCEEEEEEc------------CCeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEe
Q 003236 685 ATQMRFQPRLGRILAAAI------------ENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS 743 (837)
Q Consensus 685 i~sl~~sp~g~~llags~------------dg~I~iwDl~s~~~~~~l~~h-~~~V~sl~~spdg~~Lasgs 743 (837)
...|.|.++|...++... .+.|..++..+++....+... ...++.++|+||++.|+++-
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 457899999877664432 126788888888766666543 45799999999999887754
No 391
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=50.64 E-value=1e+02 Score=26.75 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=29.6
Q ss_pred CEEEEEEcCCeEEEEECCCCeEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003236 695 GRILAAAIENYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 695 ~~llags~dg~I~iwDl~s~~~~~~l~~h-~~~V~sl~~spdg~~LasgsDg~I~IwDl~s 754 (837)
.+.+.-..||.+.+|+...+..+..-... ......+.+..+|.+++...++.+ +|...+
T Consensus 25 ~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 25 DYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp TEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred CEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 34444445555555554323333322211 112245677778887776555544 777544
No 392
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=49.97 E-value=3.3e+02 Score=30.95 Aligned_cols=228 Identities=9% Similarity=0.050 Sum_probs=117.2
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCc----------------------------EEEEeCCCCeEEEEeccC--CCC---
Q 003236 554 STSKVESCHFSPDGK-LLATGGHDKK----------------------------AVLWCTESFTVKSTLEEH--TQW--- 599 (837)
Q Consensus 554 H~~~V~sl~fSpdg~-~Lasgs~Dg~----------------------------I~VWd~~t~~~~~~l~~h--~~~--- 599 (837)
|-..+....|.-||+ -|++.+.+|+ |.|+|-.+++.+.++.-. .+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 566788888888887 4666666665 788888888888765421 111
Q ss_pred ------------eEEEEEcC-CCCEEEEEe---CCCeEEEEEcCCCCcee-EEeeccc-----------cceEEEEEcCC
Q 003236 600 ------------ITDVRFSP-SLSRLATSS---ADRTVRVWDTENPDYSL-RTFTGHS-----------TTVMSLDFHPS 651 (837)
Q Consensus 600 ------------I~~l~fsp-dg~~Latgs---~Dg~I~IWDl~~~~~~~-~~~~~h~-----------~~V~sl~fspd 651 (837)
..++++.. +...++.+- .-..|..||...++... ..+.... ..+...++.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 22344322 112333332 12247788877654321 1221110 23344445555
Q ss_pred CCeEEEEEe----CCCcEEEEECCCCeeeeEEecCCCeeEEEEecCC--CEEEEEEcCC----eEEEEECCCCeEEEEEc
Q 003236 652 KEDLLCSCD----NNSEIRYWSINNGSCAGVFKCQSGATQMRFQPRL--GRILAAAIEN----YISILDVETQVCRLKLQ 721 (837)
Q Consensus 652 g~~llasgs----~Dg~I~vwDl~t~~~i~~~~~~~~i~sl~~sp~g--~~llags~dg----~I~iwDl~s~~~~~~l~ 721 (837)
|..=|+.|+ .||++ +|... +.+...+....|.|+. -.++.+.+++ ...+.|.++++.+....
T Consensus 337 G~dEIv~Gs~~iD~dG~~-L~st~-------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGKG-MYSTG-------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp SSCEEEETTEEECTTSCE-EEECS-------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred CCceEEEeeeEECCCCCE-eeeCC-------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcC
Confidence 554444433 33433 44442 1234456666777763 3566665541 45678999999998876
Q ss_pred CC--CCCEEEEEEcCCCC--EEEEEeCCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE
Q 003236 722 GH--KNQVHSVCWNTSGE--YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWN 796 (837)
Q Consensus 722 ~h--~~~V~sl~~spdg~--~LasgsDg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg-~~L~sgs~dg~I~IwD 796 (837)
.. .+......|.|+.. -+.+ +. .+|+.... .+.... ....-..+-|..+. +.|+- .+.|.-|+
T Consensus 409 ~~~d~Gr~~~~Didp~~pG~E~w~--~~--~l~~~~G~----~i~~~~-p~~~N~~i~WdGDl~relld---~~~i~k~~ 476 (591)
T 2zux_A 409 AGKDVGRGMAADIDPRYPGQEVWA--NG--SLYSAKGV----KIGSGV-PSSTNFGIWWDGDLLREQLD---SNRIDKWD 476 (591)
T ss_dssp CSSCCCCEEEECCCTTSSSCEEEE--TT--EEECTTSC----BCSSCC-CSCCSEEECCSSSSSCEEEE---TTEEEEEE
T ss_pred CCCCCCceeEEecCCCCCceEEEe--cC--ceECCCCC----EecCCC-CCCcceeEEECCCCcHhhhC---CceEEecc
Confidence 43 34444445555522 2222 22 35554432 111110 11112345666665 33333 23688888
Q ss_pred CCCCc
Q 003236 797 MTENK 801 (837)
Q Consensus 797 l~s~~ 801 (837)
...++
T Consensus 477 ~~~~~ 481 (591)
T 2zux_A 477 YQNGV 481 (591)
T ss_dssp TTTTE
T ss_pred cCCCc
Confidence 87775
No 393
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=45.22 E-value=4.4e+02 Score=30.97 Aligned_cols=147 Identities=8% Similarity=0.134 Sum_probs=70.3
Q ss_pred CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCceeEEeec------------cccceEEEEEcCCC-CeEEEEEeC
Q 003236 596 HTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG------------HSTTVMSLDFHPSK-EDLLCSCDN 661 (837)
Q Consensus 596 h~~~I~~l~fspdg-~~Latgs~Dg~I~IWDl~~~~~~~~~~~~------------h~~~V~sl~fspdg-~~llasgs~ 661 (837)
-.+.|.+|+++|.+ ..++++...|.|... .++......+.. ....|.+|+++|.. +.+++.++.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S--~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~ 96 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRW--NAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGD 96 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEE--ETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECS
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEE--CCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecc
Confidence 45689999999964 566677666655443 322222222211 12458999999853 344443331
Q ss_pred ----CCcEEEE-ECCCCeeeeEEecC--------CC-e-eEEEEecCC-CEEEEEEcCCeEEEEECCCCeEEEEEcC---
Q 003236 662 ----NSEIRYW-SINNGSCAGVFKCQ--------SG-A-TQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG--- 722 (837)
Q Consensus 662 ----Dg~I~vw-Dl~t~~~i~~~~~~--------~~-i-~sl~~sp~g-~~llags~dg~I~iwDl~s~~~~~~l~~--- 722 (837)
.....|| ....|+.-..+... .. + ..++++|.. +.+++++..+.|.. ....++.-..+..
T Consensus 97 ~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~~-S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 97 YVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWR-STDRAQTWSRMNQLPD 175 (763)
T ss_dssp CTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEEE-ESSTTSSCEECTTSCC
T ss_pred cccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEEE-ECCCCcCccccccCcc
Confidence 0112333 33334322222211 11 1 367888753 45666554443332 2222221111111
Q ss_pred ---CCCCEEEEEEcCCC--CEEEEEeCC
Q 003236 723 ---HKNQVHSVCWNTSG--EYLASVSDE 745 (837)
Q Consensus 723 ---h~~~V~sl~~spdg--~~LasgsDg 745 (837)
....+..|+++|.. .+++.+.++
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 11347788998753 344444443
No 394
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=44.69 E-value=2.6e+02 Score=28.14 Aligned_cols=142 Identities=8% Similarity=-0.053 Sum_probs=76.9
Q ss_pred EEEEEECCCcEEEEeCCCCeE-EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---CC---cee---EEeec
Q 003236 569 LLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD---YSL---RTFTG 638 (837)
Q Consensus 569 ~Lasgs~Dg~I~VWd~~t~~~-~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~IWDl~~---~~---~~~---~~~~~ 638 (837)
.+++.+.+|.|+--....... ...+... +.+..+........|+..+..|.++-+.+.. .. ..+ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 445566667666554332110 0112322 3444444444445677777888876665432 11 111 0111
Q ss_pred cccceEEEEEcCCCCeEEEEEeCCCcEEEEECCC-------CeeeeEEecCCCeeEEEEe-cCCCEEEEEEcCCeEEEEE
Q 003236 639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGVFKCQSGATQMRFQ-PRLGRILAAAIENYISILD 710 (837)
Q Consensus 639 h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t-------~~~i~~~~~~~~i~sl~~s-p~g~~llags~dg~I~iwD 710 (837)
....|.++....++. .++.++..|.++...+.. +.....+.....+..+... ..+..++..+.+|.+..|+
T Consensus 82 ~~e~Iv~~~~~~~~~-~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQ-KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTC-EEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCC-EEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234566664433334 344678899999987742 3333333334455555555 3456888999999988887
Q ss_pred CCC
Q 003236 711 VET 713 (837)
Q Consensus 711 l~s 713 (837)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 753
No 395
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=42.33 E-value=1.5e+02 Score=25.43 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=15.8
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003236 729 SVCWNTSGEYLASVSDELVRVWSIGS 754 (837)
Q Consensus 729 sl~~spdg~~LasgsDg~I~IwDl~s 754 (837)
.+.+..||.+++...++. .||...+
T Consensus 54 ~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 54 SAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp EEEECTTSCEEEECTTCC-EEEECCC
T ss_pred EEEEeCCccEEEECCCcE-EEEEecC
Confidence 467778888776654543 3676543
No 396
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.05 E-value=3.2e+02 Score=31.26 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=43.0
Q ss_pred ceEEEEEcCCCCeEEEEEeC-----------CCcEEEEECCCCeeeeEEec--CCCeeEEEEecCCCEEEEEEc
Q 003236 642 TVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGSCAGVFKC--QSGATQMRFQPRLGRILAAAI 702 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~-----------Dg~I~vwDl~t~~~i~~~~~--~~~i~sl~~sp~g~~llags~ 702 (837)
....|.|+++|..+|++-.. ...|+.++..+++....+.. ...++.++|+||++.|+++-.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~vQ 550 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGIQ 550 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEEe
Confidence 45679999998754434221 12577778878887766654 356899999999998887753
No 397
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=41.46 E-value=3.9e+02 Score=29.26 Aligned_cols=191 Identities=9% Similarity=0.000 Sum_probs=94.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---C-------CC--c--eeEEeec-cccceEEEEEcCCCCeEEEEEeCC
Q 003236 598 QWITDVRFSPSLSRLATSSADRTVRVWDTE---N-------PD--Y--SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN 662 (837)
Q Consensus 598 ~~I~~l~fspdg~~Latgs~Dg~I~IWDl~---~-------~~--~--~~~~~~~-h~~~V~sl~fspdg~~llasgs~D 662 (837)
..|..|+... ...+.-..||.|+.|-.. . .. . ....+.. ....|..|+... ...+.-..+
T Consensus 148 ~~i~~va~G~--~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~---~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAATD--NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK---DHILFLDEE 222 (473)
T ss_dssp CCEEEEEECS--SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS---SEEEEEETT
T ss_pred CcEEEEEccC--CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC---CeEEEEeCC
Confidence 4566666543 345555678999999751 0 00 0 0011111 122466776653 234455678
Q ss_pred CcEEEEECCCCeee--------------eEEecCCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------------eE
Q 003236 663 SEIRYWSINNGSCA--------------GVFKCQSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VC 716 (837)
Q Consensus 663 g~I~vwDl~t~~~i--------------~~~~~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~------------~~ 716 (837)
|.|+.|-....-.+ ........|..|+. ...+.++...+|.|+.|-.... ..
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~--G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIAS--GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEE--CSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEec--CCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 99999976432110 00000123444433 3456777778888988854320 11
Q ss_pred ---EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc-------------------eeE-EEeecCC-Cce
Q 003236 717 ---RLKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG-------------------ECI-HELSCTG-NKF 771 (837)
Q Consensus 717 ---~~~l~~-h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~~-------------------~~i-~~~~~~~-~~I 771 (837)
...+.. ....|..|+... ...++...||.|+.|-....... ..+ ....... ..|
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~-~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v 379 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGE-HHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKF 379 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECS-SEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCE
T ss_pred eeccccccccCCccEEEEEeCC-CeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCce
Confidence 111111 123566666532 22334444888888875432100 001 0111111 145
Q ss_pred EEEEEeCCCCEEEEEEcCCeEEEEECC
Q 003236 772 HSCVFHPTFPSLLVIGCYETLELWNMT 798 (837)
Q Consensus 772 ~sv~fspdg~~L~sgs~dg~I~IwDl~ 798 (837)
..|+. ...+.++...+|.|+.|-..
T Consensus 380 ~~Ia~--G~~hs~al~~~G~vy~wG~n 404 (473)
T 3of7_A 380 KSVAA--GSHHSVAVAQNGIAYSWGFG 404 (473)
T ss_dssp EEEEE--CSSEEEEEETTSCEEEEECC
T ss_pred EEEEe--CCCeEEEEeCCCcEEEeeCC
Confidence 44443 34466777888999999654
No 398
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.32 E-value=5e+02 Score=32.17 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=31.7
Q ss_pred eeEEEEecCCCEEEEEEcCCeEEEEECCCCeEEEEEc
Q 003236 685 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 721 (837)
Q Consensus 685 i~sl~~sp~g~~llags~dg~I~iwDl~s~~~~~~l~ 721 (837)
+.+++..++..++++.+.|++++||++.++.++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4556677788999999999999999999999988754
No 399
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=36.59 E-value=75 Score=36.56 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=41.7
Q ss_pred eEEEEEcCCCCEEEEEECC------------CcEEEEeCCCCeEEEEeccC-CCCeEEEEEcCCCCEEEEE
Q 003236 558 VESCHFSPDGKLLATGGHD------------KKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATS 615 (837)
Q Consensus 558 V~sl~fSpdg~~Lasgs~D------------g~I~VWd~~t~~~~~~l~~h-~~~I~~l~fspdg~~Latg 615 (837)
.--|+|+++|.++++-..+ ..+.+.+..+++....+..+ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999866654322 23566677777777666554 3579999999999888765
No 400
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=34.99 E-value=6.1e+02 Score=29.69 Aligned_cols=149 Identities=11% Similarity=0.108 Sum_probs=74.9
Q ss_pred CCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCeEEEEecc------------CCCCeEEEEEcC-CCCEEEEEeCC-
Q 003236 554 STSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEE------------HTQWITDVRFSP-SLSRLATSSAD- 618 (837)
Q Consensus 554 H~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~~~~l~~------------h~~~I~~l~fsp-dg~~Latgs~D- 618 (837)
-.+.|.+|+++|.+ ..++++...|.|...+ +.++.-..+.. ....|.+|+++| +...++.+..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 45679999999965 5666666667665554 33433333221 224589999988 33444443321
Q ss_pred ----CeEEEEEcCCCCceeEEeec-c------cc--ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEe-c---
Q 003236 619 ----RTVRVWDTENPDYSLRTFTG-H------ST--TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-C--- 681 (837)
Q Consensus 619 ----g~I~IWDl~~~~~~~~~~~~-h------~~--~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~-~--- 681 (837)
....||.-.++......... . .. ....|+++|.+...++.+...+.|. .....|+.-..+. .
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l~-~S~DgG~TW~~~~~~~~~ 176 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLW-RSTDRAQTWSRMNQLPDS 176 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCEE-EESSTTSSCEECTTSCCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcEE-EECCCCcCccccccCccc
Confidence 12445544433222222211 0 11 1246888886544444555444333 2222232211111 0
Q ss_pred ---CCCeeEEEEecCC-CEEEEEEcCC
Q 003236 682 ---QSGATQMRFQPRL-GRILAAAIEN 704 (837)
Q Consensus 682 ---~~~i~sl~~sp~g-~~llags~dg 704 (837)
...+..+.++|.. ..++++..++
T Consensus 177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 177 STYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp SCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred CCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1346778888753 4566666665
No 401
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=33.74 E-value=5.7e+02 Score=28.99 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=82.0
Q ss_pred CCEEEEEECCCcEEEEeCCCCeEEEEec-------------------cCC----C-C-eEEEEEcCCCCEEEEEeC---C
Q 003236 567 GKLLATGGHDKKAVLWCTESFTVKSTLE-------------------EHT----Q-W-ITDVRFSPSLSRLATSSA---D 618 (837)
Q Consensus 567 g~~Lasgs~Dg~I~VWd~~t~~~~~~l~-------------------~h~----~-~-I~~l~fspdg~~Latgs~---D 618 (837)
...+++|+.||.++.+|.. ++.+..+- .|. + + +..+.+...-+.++.++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3578888999999998876 44432221 021 1 1 223333221233444442 3
Q ss_pred CeEEEEEcCCCCc--eeEEee-------ccccceEEEEEcCCCCeEEEEEeC------CCcEEEEECCCCeeeeEEecCC
Q 003236 619 RTVRVWDTENPDY--SLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFKCQS 683 (837)
Q Consensus 619 g~I~IWDl~~~~~--~~~~~~-------~h~~~V~sl~fspdg~~llasgs~------Dg~I~vwDl~t~~~i~~~~~~~ 683 (837)
..++..|+.+... .+..+. ++.-.--.|....+++.+++.++. ...|+|.|+.++..+..+....
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 3567777765322 122222 111111223333456666665542 3579999999999998887532
Q ss_pred ------CeeEEEEe-cCC----CEEEEEEcCCeEEEEECCCC
Q 003236 684 ------GATQMRFQ-PRL----GRILAAAIENYISILDVETQ 714 (837)
Q Consensus 684 ------~i~sl~~s-p~g----~~llags~dg~I~iwDl~s~ 714 (837)
.+..+... .++ ..++++...|.|.-+|+...
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~ 285 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAG 285 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCS
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCC
Confidence 23344332 232 47899999999999999764
No 402
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=31.09 E-value=4.2e+02 Score=26.55 Aligned_cols=141 Identities=10% Similarity=0.017 Sum_probs=72.8
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECC---C----Ceee---eEEe
Q 003236 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---N----GSCA---GVFK 680 (837)
Q Consensus 611 ~Latgs~Dg~I~IWDl~~~~~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~---t----~~~i---~~~~ 680 (837)
.+++.+.+|.|+--....-......+.... .+..+........++ ..+..|.++-+.+. . |..+ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~D-~l~~~~~~~t~~~ll-~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAGD-SFKAAVKGKSNQPVV-FVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTTC-CEEEEEEEETTSCEE-EEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCCC-EEEEEEEeCCCCEEE-EEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 456667777777655443111111223233 333333332333444 34446766555432 1 2211 1122
Q ss_pred cCCCeeEEEEecCCCEEEEEEcCCeEEEEECCC-------CeEEEEEcCCCCCEEEEEEc-CCCCEEEE-EeCCeEEEEE
Q 003236 681 CQSGATQMRFQPRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWN-TSGEYLAS-VSDELVRVWS 751 (837)
Q Consensus 681 ~~~~i~sl~~sp~g~~llags~dg~I~iwDl~s-------~~~~~~l~~h~~~V~sl~~s-pdg~~Las-gsDg~I~IwD 751 (837)
....|..+....++.+++.++..|.++...+.. +.....+.. .+.+..+... .++..|+. +.+|.+..++
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 244566664444567788999999999887642 334444443 2445555454 23344444 4489888888
Q ss_pred cCC
Q 003236 752 IGS 754 (837)
Q Consensus 752 l~s 754 (837)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 753
No 403
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=30.48 E-value=5.2e+02 Score=27.50 Aligned_cols=190 Identities=9% Similarity=-0.031 Sum_probs=98.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeC--CC-CeE---------EEEeccCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCT--ES-FTV---------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~--~t-~~~---------~~~l~~h~~~I~~l~fspdg~~Latgs~Dg~I~I 623 (837)
..|..|+...+ ..+.-..||.|+.|-. .. +.+ ..........|..|+... .+.+.-..||.|+.
T Consensus 127 ~~i~~va~G~~--hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~--~hs~alt~~G~v~~ 202 (423)
T 3mvd_K 127 GKALCISAGDS--HSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA--DHLVILTTAGKVFT 202 (423)
T ss_dssp SCEEEEEECSS--EEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS--SEEEEEETTSCEEE
T ss_pred CCEEEEEcCcC--eEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC--CeEEEEecCCeEEE
Confidence 35777766543 4444567899999974 21 211 111111234566666543 35556668999999
Q ss_pred EEcCCCC----------------------ceeEEeeccccceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-------
Q 003236 624 WDTENPD----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------- 674 (837)
Q Consensus 624 WDl~~~~----------------------~~~~~~~~h~~~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~------- 674 (837)
|-..... .+..........|..++... ...++.-..++.|+.|-.....
T Consensus 203 wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~--~~~~~~~~~~g~v~~wG~n~~gqlg~~~~ 280 (423)
T 3mvd_K 203 VGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN--YCTFMRESQTQVIWATGLNNFKQLAHETK 280 (423)
T ss_dssp EECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET--TEEEEEETTTCCEEEEEECTTCTTSSCCT
T ss_pred eeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECC--cEEEEEECCCCeEEEEeCCCCCcCCCCCC
Confidence 9643211 11111111223455555442 2233333578899999654311
Q ss_pred ----eeeEEec-CCCeeEEEEecCCCEEEEEEcCCeEEEEECCCC------------eEEEEEcCCCCCEEEEEEcCCCC
Q 003236 675 ----CAGVFKC-QSGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCRLKLQGHKNQVHSVCWNTSGE 737 (837)
Q Consensus 675 ----~i~~~~~-~~~i~sl~~sp~g~~llags~dg~I~iwDl~s~------------~~~~~l~~h~~~V~sl~~spdg~ 737 (837)
....... ...|..++. ...+.++...+|.|+.|-.... .....+......|..|+... ..
T Consensus 281 ~~~~~~~p~~~~~~~v~~ia~--G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~-~h 357 (423)
T 3mvd_K 281 GKEFALTPIKTELKDIRHIAG--GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE-VC 357 (423)
T ss_dssp TCSEEEEEEEECCCSEEEEEE--CSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET-TE
T ss_pred CCceeeeeEEcCCCCeEEEEc--ccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC-Ce
Confidence 1111111 234444433 3456777788899999964321 12222333333677776543 23
Q ss_pred EEEEEeCCeEEEEEcCC
Q 003236 738 YLASVSDELVRVWSIGS 754 (837)
Q Consensus 738 ~LasgsDg~I~IwDl~s 754 (837)
.++...||.|+.|-...
T Consensus 358 s~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 358 SYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEEETTSCEEEEECCT
T ss_pred EEEEcCCCCEEEECCCC
Confidence 34445589999997654
No 404
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.36 E-value=42 Score=42.04 Aligned_cols=39 Identities=18% Similarity=0.066 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEec
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~ 594 (837)
..|.+++..++..+|++-+.|++++||++.++.++.+..
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 356667777888999999999999999999999987753
No 405
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=26.01 E-value=84 Score=36.97 Aligned_cols=38 Identities=18% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCeEEEEecc
Q 003236 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (837)
Q Consensus 556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~~~~l~~ 595 (837)
..|.|+.+ +..+|++-+.|+++++|++.++.++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 34666655 367999999999999999999998877643
No 406
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=24.03 E-value=1.1e+02 Score=26.47 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=14.5
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEc
Q 003236 728 HSVCWNTSGEYLASVSDELVRVWSI 752 (837)
Q Consensus 728 ~sl~~spdg~~LasgsDg~I~IwDl 752 (837)
..+.+..+|++++...++.+.+|..
T Consensus 52 ~~l~l~~dGNLVl~~~~~~~~vW~S 76 (111)
T 3mez_A 52 CTLRLNNRGQLEIHSANSNTPVWVY 76 (111)
T ss_dssp CEEEECTTSCEEEECSSCSSCSEEE
T ss_pred EEEEEcCCCcEEEEeCCCCEEEEEe
Confidence 3456667777766544444446643
No 407
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=23.84 E-value=8.4e+02 Score=27.70 Aligned_cols=153 Identities=12% Similarity=0.147 Sum_probs=78.3
Q ss_pred cccceEEEEEcCCCCeEEEEEeCCCc----------------------------EEEEECCCCeeeeEEecC---CC---
Q 003236 639 HSTTVMSLDFHPSKEDLLCSCDNNSE----------------------------IRYWSINNGSCAGVFKCQ---SG--- 684 (837)
Q Consensus 639 h~~~V~sl~fspdg~~llasgs~Dg~----------------------------I~vwDl~t~~~i~~~~~~---~~--- 684 (837)
|...+...+|.-||..=|+....+|+ |.++|=.+|+.+..+... ..
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 34456666666666554545544443 788888888888776642 11
Q ss_pred ------------eeEEEEec-CCCEEEEEE---cCCeEEEEECCCCeEEE--EEcCCC-----------CCEEEEEEcCC
Q 003236 685 ------------ATQMRFQP-RLGRILAAA---IENYISILDVETQVCRL--KLQGHK-----------NQVHSVCWNTS 735 (837)
Q Consensus 685 ------------i~sl~~sp-~g~~llags---~dg~I~iwDl~s~~~~~--~l~~h~-----------~~V~sl~~spd 735 (837)
..++++.. +...++++- ....|..||.+.++... .+.... ..+.-..++-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 12233211 222344433 12358889988776543 332211 12333344444
Q ss_pred CC-EEEEEe-----CCeEEEEEcCCCCCceeEEEeecCCCceEEEEEeCCC--CEEEEEEcCC----eEEEEECCCCcEE
Q 003236 736 GE-YLASVS-----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYE----TLELWNMTENKTL 803 (837)
Q Consensus 736 g~-~Lasgs-----Dg~I~IwDl~s~~~~~~i~~~~~~~~~I~sv~fspdg--~~L~sgs~dg----~I~IwDl~s~~~~ 803 (837)
|+ -|+.++ ||+ .+|... ..|...+....|.|+. -.++.+..++ -..+.|..+++++
T Consensus 337 G~dEIv~Gs~~iD~dG~-~L~st~-----------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vl 404 (591)
T 2zux_A 337 GKDEIIFGSMAVDHDGK-GMYSTG-----------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKIL 404 (591)
T ss_dssp SSCEEEETTEEECTTSC-EEEECS-----------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEE
T ss_pred CCceEEEeeeEECCCCC-EeeeCC-----------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEE
Confidence 43 222121 332 255442 1466666666777763 3455554431 3455777777776
No 408
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=23.75 E-value=7.3e+02 Score=26.95 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=73.4
Q ss_pred cceEEEEEcCCCCeEEEEEeCCCcEEEEECC---CCee----------ee--EEecCC--CeeEEEEecCCCEEEEEEcC
Q 003236 641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSC----------AG--VFKCQS--GATQMRFQPRLGRILAAAIE 703 (837)
Q Consensus 641 ~~V~sl~fspdg~~llasgs~Dg~I~vwDl~---t~~~----------i~--~~~~~~--~i~sl~~sp~g~~llags~d 703 (837)
..|..|+.... ..+.-..+|.|+.|-.. .+.. .. .+.... .|..|+. ...+.++...+
T Consensus 148 ~~i~~va~G~~---hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~--G~~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAATDN---MSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP--GKDHILFLDEE 222 (473)
T ss_dssp CCEEEEEECSS---EEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE--CSSEEEEEETT
T ss_pred CcEEEEEccCC---EEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe--cCCeEEEEeCC
Confidence 45666666532 33445668999999751 1110 00 111111 2444443 44677788889
Q ss_pred CeEEEEECCCC-e--------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC------c---e
Q 003236 704 NYISILDVETQ-V--------------CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK------G---E 759 (837)
Q Consensus 704 g~I~iwDl~s~-~--------------~~~~l~~h~~~V~sl~~spdg~~LasgsDg~I~IwDl~s~~~------~---~ 759 (837)
|.|+.|-.... . ....+ ....|..|+.. ....++...+|.|+.|-...... . .
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G-~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASG-ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEEC-SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTC
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecC-CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCc
Confidence 99999965421 0 00001 11356666553 22334444588999997543210 0 0
Q ss_pred eEE---Eee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEC
Q 003236 760 CIH---ELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM 797 (837)
Q Consensus 760 ~i~---~~~-~~~~~I~sv~fspdg~~L~sgs~dg~I~IwDl 797 (837)
.+. .+. .....|..++.. ..+.++...+|.|+.|-.
T Consensus 300 ~~~~P~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~ 339 (473)
T 3of7_A 300 LVTKPKRLALPDNVVIRSIAAG--EHHSLILSQDGDLYSCGR 339 (473)
T ss_dssp EEEEEEECCCCTTCCEEEEEEC--SSEEEEEETTSCEEEEEE
T ss_pred eeeccccccccCCccEEEEEeC--CCeEEEEeCCCeEEEEEC
Confidence 111 111 112345544443 345566677888888854
No 409
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=22.58 E-value=9.7e+02 Score=28.00 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeeEEec
Q 003236 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKC 681 (837)
Q Consensus 642 ~V~sl~fspdg~~llasgs~Dg~I~vwDl~t~~~i~~~~~ 681 (837)
.|.++.+. ..++++-+.|.++|+||++++.++.....
T Consensus 223 ~Is~~~~~---~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFH---ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEET---TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccC---CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45555554 34667888899999999999999988876
No 410
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=22.15 E-value=56 Score=30.70 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChHHHHHH-----HHHhcCCCCCC
Q 003236 11 MLDVYIYDYLLKRKLHASAKA-----FQTEGKVSTDP 42 (837)
Q Consensus 11 ~l~~yiydyl~k~~~~~~A~~-----~~~e~~~~~~~ 42 (837)
.=..+||+||++.|+.+.|-| +..|.++.++.
T Consensus 16 ~~a~~i~~~l~~~G~s~~~aAGilGN~~~ESg~nP~~ 52 (159)
T 3ct5_A 16 VNAQYILNYLSSNGWTKQAICGMLGNMQSESTINPGL 52 (159)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 345699999999998887776 66788876653
No 411
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=21.18 E-value=3.8e+02 Score=22.74 Aligned_cols=25 Identities=8% Similarity=0.304 Sum_probs=15.1
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003236 728 HSVCWNTSGEYLASVSDELVRVWSIG 753 (837)
Q Consensus 728 ~sl~~spdg~~LasgsDg~I~IwDl~ 753 (837)
..+.+..+|.+++...++. .+|...
T Consensus 52 ~~l~l~~dGNLvl~~~~~~-~~W~S~ 76 (109)
T 3dzw_A 52 CHLSMQSDGNLVVYSPRNN-PIWASN 76 (109)
T ss_dssp CEEEECTTSCEEEECTTSC-EEEECC
T ss_pred EEEEEeCCCCEEEECCCCC-EEEECC
Confidence 3466777788776544443 477543
No 412
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=21.01 E-value=87 Score=25.97 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003236 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (837)
Q Consensus 10 ~~l~~yiydyl~k~~~~~~A~~~~~e~~~~~~ 41 (837)
.+++.-|-|||.=++|.=|..-|..|++.+..
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~~~ 50 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTLQG 50 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCCCC
Confidence 47899999999999999999999999999853
Done!