Query 003238
Match_columns 837
No_of_seqs 174 out of 308
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 19:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07393 Sec10: Exocyst comple 100.0 1E-114 3E-119 1044.5 61.9 629 148-826 1-708 (710)
2 KOG3745 Exocyst subunit - Sec1 100.0 4E-110 8E-115 946.2 62.8 663 99-830 52-759 (763)
3 PF10191 COG7: Golgi complex c 99.4 1E-06 2.2E-11 107.9 61.8 571 160-803 91-753 (766)
4 PF04100 Vps53_N: Vps53-like, 98.6 5E-05 1.1E-09 85.9 31.0 338 99-474 8-380 (383)
5 KOG0412 Golgi transport comple 98.5 0.0069 1.5E-07 71.0 56.7 261 97-371 22-295 (773)
6 KOG2180 Late Golgi protein sor 97.3 0.68 1.5E-05 55.0 43.2 341 98-476 22-397 (793)
7 PF06046 Sec6: Exocyst complex 97.1 0.28 6E-06 58.8 28.7 135 699-833 397-545 (566)
8 PF04437 RINT1_TIP1: RINT-1 / 97.0 0.51 1.1E-05 55.7 28.8 164 653-817 308-493 (494)
9 KOG4182 Uncharacterized conser 96.2 3.3 7.2E-05 47.1 32.3 117 252-370 171-305 (828)
10 PF04091 Sec15: Exocyst comple 94.0 0.72 1.6E-05 51.0 13.2 126 651-791 144-279 (311)
11 PF10475 DUF2450: Protein of u 92.5 8 0.00017 42.4 18.4 189 79-290 11-202 (291)
12 PF08318 COG4: COG4 transport 91.0 2.1 4.5E-05 47.9 11.9 115 262-382 2-119 (331)
13 PF10392 COG5: Golgi transport 88.8 6.8 0.00015 37.7 11.9 97 104-200 30-126 (132)
14 smart00762 Cog4 COG4 transport 87.4 6.7 0.00014 43.7 12.5 103 262-368 2-107 (324)
15 PF07889 DUF1664: Protein of u 83.9 6.1 0.00013 37.8 8.5 78 103-180 32-109 (126)
16 PF10392 COG5: Golgi transport 82.6 38 0.00082 32.5 13.7 80 102-182 35-115 (132)
17 PHA02562 46 endonuclease subun 74.9 1.3E+02 0.0028 35.9 18.2 84 117-200 191-281 (562)
18 PF14923 CCDC142: Coiled-coil 74.4 57 0.0012 37.9 13.9 104 697-800 271-388 (450)
19 PF06419 COG6: Conserved oligo 69.8 2.7E+02 0.0058 34.0 45.0 282 107-396 13-326 (618)
20 PF01763 Herpes_UL6: Herpesvir 62.0 23 0.00049 42.2 7.6 51 14-64 285-341 (557)
21 KOG4552 Vitamin-D-receptor int 61.4 1E+02 0.0022 31.8 11.0 93 99-201 46-140 (272)
22 PF08700 Vps51: Vps51/Vps67; 61.3 75 0.0016 27.7 9.3 67 99-165 9-77 (87)
23 PF06363 Picorna_P3A: Picornav 60.1 50 0.0011 29.5 7.5 87 655-745 5-94 (100)
24 PF14712 Snapin_Pallidin: Snap 59.9 73 0.0016 28.3 9.1 67 98-164 12-89 (92)
25 PF04740 LXG: LXG domain of WX 56.0 1E+02 0.0023 31.5 10.7 74 99-172 52-132 (204)
26 PF05531 NPV_P10: Nucleopolyhe 52.2 24 0.00052 30.6 4.2 48 118-166 15-62 (75)
27 PF04899 MbeD_MobD: MbeD/MobD 51.6 84 0.0018 27.0 7.4 66 115-180 4-69 (70)
28 PF10241 KxDL: Uncharacterized 49.4 92 0.002 27.8 7.8 61 99-163 21-81 (88)
29 cd07596 BAR_SNX The Bin/Amphip 49.1 3E+02 0.0065 27.9 14.3 39 93-131 4-42 (218)
30 KOG3990 Uncharacterized conser 48.7 67 0.0014 34.0 7.6 62 100-161 225-296 (305)
31 PF04124 Dor1: Dor1-like famil 47.3 4.5E+02 0.0097 29.4 27.1 86 116-201 16-108 (338)
32 COG4942 Membrane-bound metallo 44.9 2.1E+02 0.0045 33.1 11.4 89 94-182 155-246 (420)
33 PF10267 Tmemb_cc2: Predicted 44.1 2.5E+02 0.0054 32.3 12.0 84 104-194 216-308 (395)
34 cd07621 BAR_SNX5_6 The Bin/Amp 42.9 4.3E+02 0.0092 27.9 13.9 35 90-124 21-55 (219)
35 KOG2129 Uncharacterized conser 42.9 1.7E+02 0.0036 33.4 9.9 55 99-153 252-306 (552)
36 PF00261 Tropomyosin: Tropomyo 42.8 2.2E+02 0.0048 30.1 10.9 76 105-180 139-217 (237)
37 PF06148 COG2: COG (conserved 41.7 11 0.00024 36.2 0.7 96 105-200 28-123 (133)
38 PRK10361 DNA recombination pro 41.0 1.6E+02 0.0035 34.5 10.1 54 109-162 69-122 (475)
39 PF10146 zf-C4H2: Zinc finger- 39.9 2.1E+02 0.0045 30.4 9.9 86 108-194 2-87 (230)
40 PF14988 DUF4515: Domain of un 39.8 2.5E+02 0.0054 29.3 10.4 93 102-200 66-158 (206)
41 PF03127 GAT: GAT domain; Int 38.9 56 0.0012 29.7 4.9 53 108-162 42-94 (100)
42 PF14662 CCDC155: Coiled-coil 36.7 2.5E+02 0.0054 28.9 9.3 74 103-176 63-139 (193)
43 PRK04863 mukB cell division pr 36.6 6.4E+02 0.014 34.3 15.7 34 102-135 302-335 (1486)
44 cd07674 F-BAR_FCHO1 The F-BAR 35.0 3.5E+02 0.0077 29.0 11.1 72 112-183 118-198 (261)
45 PF10805 DUF2730: Protein of u 34.9 2.3E+02 0.005 26.2 8.3 45 136-180 46-92 (106)
46 PF00611 FCH: Fes/CIP4, and EF 33.9 2.6E+02 0.0057 24.1 8.4 47 99-153 12-58 (91)
47 PF05816 TelA: Toxic anion res 33.8 3.5E+02 0.0075 30.3 11.1 59 106-164 83-141 (333)
48 PF15463 ECM11: Extracellular 33.8 2.2E+02 0.0048 27.6 8.4 54 99-152 79-132 (139)
49 PF10158 LOH1CR12: Tumour supp 33.5 4.4E+02 0.0095 25.5 10.2 89 99-201 27-118 (131)
50 KOG1029 Endocytic adaptor prot 33.4 9.1E+02 0.02 30.1 14.5 59 142-200 440-499 (1118)
51 KOG2346 Uncharacterized conser 33.1 3.3E+02 0.0071 32.1 10.5 51 723-773 549-599 (636)
52 PF13805 Pil1: Eisosome compon 32.2 6.1E+02 0.013 27.6 12.0 25 174-200 186-211 (271)
53 PF06120 Phage_HK97_TLTM: Tail 31.8 6.4E+02 0.014 27.9 12.3 87 98-184 72-172 (301)
54 PF01442 Apolipoprotein: Apoli 31.5 4.8E+02 0.01 25.6 11.0 77 99-175 26-104 (202)
55 smart00503 SynN Syntaxin N-ter 30.5 3.8E+02 0.0081 24.4 9.2 64 100-163 43-113 (117)
56 cd07650 F-BAR_Syp1p_like The F 30.5 6.6E+02 0.014 26.4 17.8 169 93-301 2-187 (228)
57 PRK11637 AmiB activator; Provi 29.4 3.7E+02 0.0081 31.1 10.9 38 99-136 169-206 (428)
58 PF14523 Syntaxin_2: Syntaxin- 29.3 3E+02 0.0065 24.6 8.1 66 99-164 29-96 (102)
59 PF06103 DUF948: Bacterial pro 29.1 3.7E+02 0.0081 23.7 8.5 16 165-180 73-88 (90)
60 cd07618 BAR_Rich1 The Bin/Amph 27.9 5.4E+02 0.012 27.7 10.7 65 98-162 109-183 (246)
61 PF06248 Zw10: Centromere/kine 27.8 1.2E+03 0.025 28.3 37.9 236 217-479 122-395 (593)
62 cd07959 Anticodon_Ia_Leu_AEc A 27.5 3E+02 0.0066 24.8 8.0 32 756-789 71-102 (117)
63 KOG1962 B-cell receptor-associ 27.1 2.7E+02 0.0059 29.2 8.1 18 100-117 111-128 (216)
64 PF12718 Tropomyosin_1: Tropom 26.9 6E+02 0.013 24.8 11.1 15 166-180 107-121 (143)
65 PF10498 IFT57: Intra-flagella 26.6 3.8E+02 0.0083 30.4 9.8 85 98-182 229-316 (359)
66 PRK10884 SH3 domain-containing 26.5 3.5E+02 0.0077 28.2 8.9 8 99-106 92-99 (206)
67 PRK11637 AmiB activator; Provi 26.3 1E+03 0.023 27.4 15.8 74 108-182 45-118 (428)
68 PF01519 DUF16: Protein of unk 26.1 1.2E+02 0.0026 27.9 4.6 18 162-179 83-100 (102)
69 cd07648 F-BAR_FCHO The F-BAR ( 26.1 3E+02 0.0066 29.4 8.7 15 169-183 184-198 (261)
70 cd07596 BAR_SNX The Bin/Amphip 25.7 3.9E+02 0.0085 27.0 9.3 38 140-180 146-183 (218)
71 KOG1853 LIS1-interacting prote 25.4 3.7E+02 0.008 28.8 8.6 83 100-189 91-176 (333)
72 KOG2148 Exocyst protein Sec3 [ 25.2 1.3E+03 0.027 28.5 13.7 133 98-230 177-319 (867)
73 PF08549 SWI-SNF_Ssr4: Fungal 25.0 2.3E+02 0.0049 34.5 7.9 36 112-147 362-397 (669)
74 PRK02224 chromosome segregatio 24.6 1.5E+03 0.033 28.6 16.9 34 155-188 648-681 (880)
75 PF04156 IncA: IncA protein; 24.5 7.3E+02 0.016 24.9 11.1 24 136-159 127-150 (191)
76 cd00179 SynN Syntaxin N-termin 24.3 5.3E+02 0.012 24.7 9.4 64 100-163 41-112 (151)
77 KOG3614 Ca2+/Mg2+-permeable ca 24.2 2.4E+02 0.0053 36.9 8.3 56 255-311 611-666 (1381)
78 PF04859 DUF641: Plant protein 24.1 1.8E+02 0.0038 28.2 5.6 22 141-162 110-131 (131)
79 KOG3850 Predicted membrane pro 24.0 5.2E+02 0.011 29.4 9.8 59 99-164 259-317 (455)
80 PRK15365 type III secretion sy 23.8 2.8E+02 0.0061 25.3 6.3 23 146-168 73-95 (107)
81 PF09969 DUF2203: Uncharacteri 23.4 4E+02 0.0088 25.3 7.9 70 96-165 6-76 (120)
82 KOG0980 Actin-binding protein 23.2 8.1E+02 0.018 31.0 12.0 148 18-194 253-413 (980)
83 cd07624 BAR_SNX7_30 The Bin/Am 22.5 4.4E+02 0.0096 27.1 8.8 46 92-137 13-58 (200)
84 KOG3390 General control of ami 22.3 3.9E+02 0.0084 24.6 6.9 53 125-177 18-75 (120)
85 cd07595 BAR_RhoGAP_Rich-like T 22.3 7.4E+02 0.016 26.5 10.6 35 99-133 110-144 (244)
86 PRK15048 methyl-accepting chem 22.3 7.9E+02 0.017 29.2 12.2 80 97-176 246-328 (553)
87 PF08317 Spc7: Spc7 kinetochor 22.2 5.2E+02 0.011 28.8 9.8 8 35-42 54-61 (325)
88 PF14942 Muted: Organelle biog 22.0 4.6E+02 0.01 25.8 8.2 30 81-117 13-44 (145)
89 PF12329 TMF_DNA_bd: TATA elem 21.6 4.7E+02 0.01 22.5 7.3 56 119-174 10-68 (74)
90 smart00787 Spc7 Spc7 kinetocho 21.5 4.7E+02 0.01 29.1 9.2 11 33-43 47-57 (312)
91 PF05664 DUF810: Protein of un 21.4 9.4E+02 0.02 29.8 12.4 83 648-739 513-595 (677)
92 cd07648 F-BAR_FCHO The F-BAR ( 21.4 1E+03 0.022 25.4 16.1 42 99-148 8-49 (261)
93 PRK10803 tol-pal system protei 21.3 3.9E+02 0.0084 28.9 8.4 62 103-164 43-104 (263)
94 cd07958 Anticodon_Ia_Leu_BEm A 21.0 4.5E+02 0.0097 23.5 7.8 52 734-789 49-102 (117)
95 cd07600 BAR_Gvp36 The Bin/Amph 21.0 9.9E+02 0.021 25.5 11.2 29 99-127 136-164 (242)
96 smart00188 IL10 Interleukin-10 21.0 5E+02 0.011 25.3 8.0 84 341-433 4-89 (137)
97 cd07669 BAR_SNX33 The Bin/Amph 20.9 9.7E+02 0.021 25.0 14.7 150 99-283 18-174 (207)
98 PF13851 GAS: Growth-arrest sp 20.7 9.3E+02 0.02 24.9 10.7 37 106-142 99-135 (201)
99 PF04048 Sec8_exocyst: Sec8 ex 20.7 2.2E+02 0.0048 27.7 5.8 55 118-172 37-91 (142)
100 KOG2347 Sec5 subunit of exocys 20.7 3.6E+02 0.0078 33.9 8.5 91 698-789 805-898 (934)
101 smart00055 FCH Fes/CIP4 homolo 20.5 4.2E+02 0.009 22.8 7.1 42 99-148 12-53 (87)
102 PF10454 DUF2458: Protein of u 20.5 3.9E+02 0.0084 26.4 7.4 69 100-168 3-74 (150)
103 PF12709 Kinetocho_Slk19: Cent 20.4 6.3E+02 0.014 22.7 8.1 39 112-150 6-45 (87)
104 PF15469 Sec5: Exocyst complex 20.4 8.6E+02 0.019 24.3 11.2 140 153-309 40-179 (182)
105 cd07673 F-BAR_FCHO2 The F-BAR 20.3 4.3E+02 0.0094 28.6 8.5 45 114-158 127-176 (269)
106 PF01843 DIL: DIL domain; Int 20.2 1.3E+02 0.0028 27.4 3.8 88 726-815 5-97 (105)
No 1
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=100.00 E-value=1.5e-114 Score=1044.52 Aligned_cols=629 Identities=33% Similarity=0.545 Sum_probs=551.5
Q ss_pred hhHHHhhHHhhhhhhcccchhhhhhhhhhhhhhhhhhcHHHHHHHHHHHHhhhCCCC--CCcccCCCCCCchhHHHHHHH
Q 003238 148 VDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPG--DLMELSPLFSDDSRVAEAASI 225 (837)
Q Consensus 148 ~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~~~R~ra~ea~~Li~~~~eF~~~~~--~l~~ls~~f~dp~~~~eaA~i 225 (837)
+++++++|++||++||.||++|+||||+|++++++|.||.+|++||+||++|++..+ .+..+++.|++|++..+||+|
T Consensus 1 ~~~~~~~f~~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~i 80 (710)
T PF07393_consen 1 FQEAIDSFQQLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKI 80 (710)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCccchHHHHHH
Confidence 468899999999999999999999999999999999999999999999999997422 344456889999999999999
Q ss_pred HHHHHHhhhhhhcccCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhccCCchhH
Q 003238 226 AEKLRSFAEEDIGRQGIQDMGNANASRGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAM 305 (837)
Q Consensus 226 i~~L~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~Ie~~~e~~E~~LL~eF~~ay~~~d~~~M~~~A~iL~~fngg~~~i 305 (837)
+++|+++|+++. +.+++..++++|++||+.||++||++|+.+|+++|+++|++||+||.+||||.+||
T Consensus 81 l~~L~~ls~~~~------------~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i 148 (710)
T PF07393_consen 81 LRNLLRLSKELS------------DIPGFEEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCI 148 (710)
T ss_pred HHHHHHHHHhcC------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 999999999862 24678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcchhhhccch-------hhhhhhccCCCCCCCcchhhhHHHHHHHHHHHHHhhHHHHhhcCCCchHHHHHHH
Q 003238 306 QHYVATRPMFIDVEVMNA-------DVRLVLGDQGSQASPSNVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILV 378 (837)
Q Consensus 306 ~~fV~k~~~Fid~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~e~~iI~~VFp~p~~Vm~~fv 378 (837)
++||+||+||++.+.+.. +.|..+++ ++..++...+.++++|++|+.+|++|+++|++|||+|.+||.+|+
T Consensus 149 ~~fi~k~~~f~~~~~~~~~~~~~~~~~~~~l~d--~~~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fi 226 (710)
T PF07393_consen 149 DFFINKHEFFIDEDQLDESNGFEDEEIWEKLSD--PDSHPPINEESLDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFI 226 (710)
T ss_pred HHHHHhChhhhhhhhhccccccchhHHHHhccC--cccccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 999999999998776621 23344444 333446678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC---------CCcHHHHHHHHh
Q 003238 379 QRVLEQRVTAILDKLLVKPSLVNLPPMEEGGLLLYLRMLAVAYEKTQELARDLRTVGCG---------DLDIEGVTECLF 449 (837)
Q Consensus 379 qRIf~q~I~~~i~~lL~~a~~~s~~~~~~~~~~~yLr~L~~ly~~t~~lv~~L~~~~~~---------~~~l~~~~~~lF 449 (837)
||||+|+|++||+.+|+.+.. .+.++||++|+.+|.+|.+|+++|+++..+ ...++++++++|
T Consensus 227 ervf~~~I~~~i~~lL~~a~~--------~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~~lF 298 (710)
T PF07393_consen 227 ERVFEQVIQEYIESLLEEASS--------ISTLAYLRTLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSAFLDQLVESLF 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHhhcc--------CCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHH
Confidence 999999999999999998855 356999999999999999999999999432 235999999999
Q ss_pred hhhh--hhhHHHHHHHHHHHHHHHHHHHHHhhhh----------------------c-c----c---------ccCc-cc
Q 003238 450 TSHK--EEYPEHEQASLRQLYQAKIEELRSESQQ----------------------L-S----E---------SSGT-IG 490 (837)
Q Consensus 450 ~~yl--~~Yl~~E~~~L~~~~~~~~~~~~~~~~~----------------------~-s----~---------~~~~-~~ 490 (837)
++|+ +.|++.|+++|++.+.+.+.+|+....+ . . . .... ..
T Consensus 299 ~~~l~~~~Yl~~E~~~l~~~~~~~l~~f~~~~e~~~~~~~~~~~~k~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (710)
T PF07393_consen 299 EPYLEDDEYLEEEKRSLKELLESILSRFNELHEREISTKSLSNKLKNQFLTSFKNVLMSSSSSSSSKLSQISSFMSSKLD 378 (710)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHhhhhhcccC
Confidence 9999 8999999999999999999999922111 0 0 0 0000 00
Q ss_pred CC--C------------Cc----cccCCCccCCHHHHHHHHHHHHHHhhhhhhccCChhhHHHhHHHHHHHHHHHHH-HH
Q 003238 491 RS--K------------GA----SVASSPQQISVTVVTEFVRWNEEALSRCTLFSSQPAALAANVRAVFTCLLDQVS-QY 551 (837)
Q Consensus 491 ~~--~------------~~----~~~~~~~~ls~~va~~~l~~~~eal~R~~~l~~~~~~~~~~~~~if~~Ll~~l~-~~ 551 (837)
++ . .+ .+.+++++||+++|.+||+|+++|++||.+|++ |++++++|.+||.+|++.+| +|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a~~il~~~~es~~R~~~l~~-~~~~~~~~~~if~~Ll~~l~~~~ 457 (710)
T PF07393_consen 379 RSQQQASLENNLDLAAKANIMSSNLEGIDSLLSLEVAENILQWNKESLGRCLELSP-PSDLPKNCQEIFEILLQSLGEEH 457 (710)
T ss_pred cccccccccchhhhhccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 123568899999999999999999999999998 89999999999999999998 59
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhccchhHhHHHHHhhhhhHHHHHHHHHHHhhhhhc
Q 003238 552 ITEGLERARDSLTEAAALRERFVLGTSVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSVAIVQQYFANSISRLL 631 (837)
Q Consensus 552 i~~~le~a~~~l~~~~~~~~~~~~~~~~~r~v~~~~~~a~e~~~~~~e~~l~~F~~~V~~a~~i~~llq~~~~~~i~~~i 631 (837)
|++|||.+...+. +.+....+.+||+. |+++|+.|+.|++||+.||+++|.|++
T Consensus 458 i~~~lea~~~~~~-------------------------~~~~~~~~~~~~l~-fl~~i~~~~~i~~l~~~~~~~~l~pl~ 511 (710)
T PF07393_consen 458 IEPALEAAYYKLS-------------------------SQDIAESKEVPPLV-FLELINQADTILQLLQIFYKEELLPLI 511 (710)
T ss_pred HHHHHHHHHhhhh-------------------------cccccccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999995443221 11111124568987 999999999999999999999988776
Q ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 003238 632 LPVDGAHAASCEEMATAMSSAEAAAYKGLQQCIETVMAEVERLLSAEQKPSDYKSPDDGIAPDHRPTNACTRVVAYLSRV 711 (837)
Q Consensus 632 ~p~~~~~~~~~~~~~~~~~~lE~~v~~gL~~~Id~l~~~v~~iL~t~Qkk~DF~P~~~~~~~~~~~T~aC~~vv~~L~~~ 711 (837)
.........|.+.+++++.++|++++.||++||++||+||+++|+ +|||+||+|++++...+..||+||++||+||+.+
T Consensus 512 ~~~~~~~~~~~~~k~~~~~~le~~v~~gL~~~i~~l~~~v~~iL~-~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~ 590 (710)
T PF07393_consen 512 QSSPDFLNECIQKKKSFESRLEEKVNAGLNKGIDVLMNWVEFILS-EQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERH 590 (710)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCCccccccccCCCHHHHHHHHHHHHH
Confidence 555444557889999999999999999999999999999999999 9999999999887766678999999999999999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhccccCccchhHHHhhHHHHHHHHHhcCCCchHHHHHHHHhhhceeee
Q 003238 712 LEAAFTALEGLNKQAFLTELGNRLHKGLLNHWQKFTFNPSGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGIMANVFIV 791 (837)
Q Consensus 712 ~~~l~~~ldg~Nle~Fl~EIG~rl~~~L~~HlKkf~vS~~Ggi~Li~Dln~Y~~~i~~~~~p~l~~~Fe~LreL~nLfiV 791 (837)
+..++++|||+|+++|++|||+|||++|++|||||+||++|||+|+||||+|+++|++|++|.+.++|++||+|||||+|
T Consensus 591 ~~~~~~~l~~~nl~~f~~elg~~l~~~l~~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~~~~~v~~~F~~L~~l~nl~~v 670 (710)
T PF07393_consen 591 CSLLKGSLDGSNLDVFLQELGERLHRLLLKHLKKFTVSSTGGLQLIKDLNEYQDFIRSWGIPSVDEKFEALKELGNLFIV 670 (710)
T ss_pred HHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHhCccCchhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhc-CC--CCCHHHHHHHHhhhhhhhhhhHH
Q 003238 792 APESLSTLFE-GT--PSIRKDAQRFIQLREDYKSAKLA 826 (837)
Q Consensus 792 ~pe~lk~l~~-g~--~~~~~~i~~fIq~R~D~~~~k~~ 826 (837)
+|++++++|. |. .++++++|+||+||+||++++++
T Consensus 671 ~~~~l~~~~~~~~~~~~~~~~i~~fi~~R~D~~~~~~~ 708 (710)
T PF07393_consen 671 DPENLKELCREGQLGRFSPEEIYEFIQRRSDWKSIKID 708 (710)
T ss_pred cHHHHHHHHhhccccCCCHHHHHHHHHHhhhhhhcccc
Confidence 9999999996 43 67899999999999999999875
No 2
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-110 Score=946.24 Aligned_cols=663 Identities=25% Similarity=0.375 Sum_probs=580.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhh
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQS 178 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~ 178 (837)
++++++|+++++||+.|+++.++|++.+|.+++.++..|.+++..|+..+..+...|..||++++.|+.+++|+||+||+
T Consensus 52 ~~l~~~f~~~~~eL~~L~e~~qnk~~~~e~~~~~~q~s~~kkv~~lr~k~~~a~~l~~~ld~~~~~v~~~vv~lgq~Le~ 131 (763)
T KOG3745|consen 52 KGLIKTFENEIKELTLLDERYQNKIRMLEEQMSTEQNSYKKKVDKLREKNSTALLLFLQLDDNIFPVSYKVVHLGQQLET 131 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccccccccccccHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcHHHHHHHHHHHHhhhCCCCCCcccCCCCCCc-hhHHHHHHHHHHHHHhhhhhhcccCcccCCCCcccccHHHH
Q 003238 179 ADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDD-SRVAEAASIAEKLRSFAEEDIGRQGIQDMGNANASRGLEVA 257 (837)
Q Consensus 179 ~~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp-~~~~eaA~ii~~L~~ia~~~~~~~~~~~~~~~~~~~~~~~~ 257 (837)
++++|+|+.+|.+||+||.+|++. |+....+.+|+++ ++..+||+++++|+.||++.+ .+.+.++
T Consensus 132 v~~~r~r~~~a~~lir~~~eF~s~-~~~~i~s~i~~~~~~k~leaa~~~~kLl~isnel~-------------~~~f~~t 197 (763)
T KOG3745|consen 132 VIKPRSRAVDAQELIRYYNEFLSG-GRQYINSDIFTSAFDKNLEAADRIKKLLLISNELP-------------YGKFSET 197 (763)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcc-CchhHHHHHhcChhhhHHHHHHHHHHHHHHhccCC-------------cchhHHH
Confidence 999999999999999999999963 3333358889999 889999999999999999862 2345679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhccCCchhHHHHHhhcCcchhhhccchhhhhhhccCCCCCC
Q 003238 258 VANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNADVRLVLGDQGSQAS 337 (837)
Q Consensus 258 ~~~Ie~~~e~~E~~LL~eF~~ay~~~d~~~M~~~A~iL~~fngg~~~i~~fV~k~~~Fid~~~~~~~~~~~~~~~~~~~~ 337 (837)
+..|+++++.+|+.+|++|+.+||++|+++|+++|.||.+||| +|+.|+++|++|||..+.+. + .
T Consensus 198 ka~I~k~~~~lE~~lleeF~~~~R~~n~~~m~~~a~iL~~F~G---~v~~y~n~~d~fid~~~~~~-~----------~- 262 (763)
T KOG3745|consen 198 KARIEKKYEVLEQNLLEEFNSAQREENIKKMAEFAKILSEFKG---VVRMYLNCVDDFIDSDEFQP-E----------Q- 262 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhcc---hHHHHHHhHHHHHHHhhccc-h----------h-
Confidence 9999999999999999999999999999999999999999999 89999999999998621110 0 0
Q ss_pred CcchhhhHHHHHHHHHHHHHhhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccCCHHHHHHHH
Q 003238 338 PSNVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVLEQRVTAILDKLLVKPSLVNLPPMEEGGLLLYLRML 417 (837)
Q Consensus 338 ~~~~~~~l~~l~~~i~~~~~~e~~iI~~VFp~p~~Vm~~fvqRIf~q~I~~~i~~lL~~a~~~s~~~~~~~~~~~yLr~L 417 (837)
+-....++++|.++..+|+.++++|++|||+|+.||++|++|||.++|++|++.+|+.... ..+.++|||.|
T Consensus 263 -~fi~~~~~di~~D~~~l~~~~sk~ik~vf~~pe~V~q~~iq~If~~~ik~~~~e~le~~~~-------~~~~l~ylR~L 334 (763)
T KOG3745|consen 263 -PFISNILQDIFNDILKLCESESKFIKRVFPNPETVLQKFIQNIFGQKIKDRVEELLEECKE-------GKDFLAYLRDL 334 (763)
T ss_pred -hHHHHHHHHHHHHHHHHHHhHhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------cccHHHHHHHH
Confidence 1123358899999999999999999999999999999999999999999999999987532 26789999999
Q ss_pred HHHHHHHHHHHHHhhhcC----CC--CCcHHHHHHHHhhhhhhhhHHHHHHHH----------HHHHHHHHHHHHHhhh-
Q 003238 418 AVAYEKTQELARDLRTVG----CG--DLDIEGVTECLFTSHKEEYPEHEQASL----------RQLYQAKIEELRSESQ- 480 (837)
Q Consensus 418 ~~ly~~t~~lv~~L~~~~----~~--~~~l~~~~~~lF~~yl~~Yl~~E~~~L----------~~~~~~~~~~~~~~~~- 480 (837)
|++|.++.+++++|.++. .. ...+.++.+++|..|+..|++.|..++ ...+...+.++....+
T Consensus 335 ~~Lys~~~k~~~~L~~~~e~~~~~~d~~~lst~~~q~f~~~~~~y~e~e~~~~~n~~~~~~~~~~k~s~~l~~~~~sp~~ 414 (763)
T KOG3745|consen 335 YGLYSSTLKLSKDLVDYFEQLFISDDNQFLSTLLEQIFIDYLAKYIEVEDKYLQNTLKNLFLETFKCSTLLPRFYESPKE 414 (763)
T ss_pred HHHHHHHHhhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHHhhHHHHHHHHHhhhchhhHHHHHHHHHhHHHHhcCchh
Confidence 999999999999999872 22 356999999999999999999999999 5555555555554322
Q ss_pred -hccccc--Cc--------ccCCCCc------------cccCCCccCCHHHHHHHHHHHHHHhhhhhhccCChhhHHHhH
Q 003238 481 -QLSESS--GT--------IGRSKGA------------SVASSPQQISVTVVTEFVRWNEEALSRCTLFSSQPAALAANV 537 (837)
Q Consensus 481 -~~s~~~--~~--------~~~~~~~------------~~~~~~~~ls~~va~~~l~~~~eal~R~~~l~~~~~~~~~~~ 537 (837)
+.+..+ +. ..|.+.. +--.+++++|.|+|.+||||+++|+.||..|++ |+++|-++
T Consensus 415 h~k~~~t~~~~~ld~~~~v~~r~N~~~d~~~~~~a~~s~~l~g~Tfis~dl~~~iLqe~kes~~Ra~~l~~-~~dlp~~~ 493 (763)
T KOG3745|consen 415 HQKSNSTELGGKLDAKTLVAARTNTSKDRLAYQAAVISENLGGETFISEDLAIKILQETKESLARAKVLID-PQDLPLNI 493 (763)
T ss_pred hhhhhcccccccchhhHHHHHhhcCchhHHHHHHhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhcC-ccccchHH
Confidence 222111 11 1121111 011358899999999999999999999999998 89999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhccchhHhHHHHHhhhhhHH
Q 003238 538 RAVFTCLLDQVS-QYITEGLERARDSLTEAAALRERFVLGTSVSRRVAAAAASAAEAAAAAGESSFRSFMVAVQRCGSSV 616 (837)
Q Consensus 538 ~~if~~Ll~~l~-~~i~~~le~a~~~l~~~~~~~~~~~~~~~~~r~v~~~~~~a~e~~~~~~e~~l~~F~~~V~~a~~i~ 616 (837)
..||++|+..++ +||++|||+|+..++ .++ ..+.|.++|+++|+.|++|+
T Consensus 494 l~i~~iLl~~L~~~hv~~ale~a~~~is-------------------------~a~----~~vep~l~Fl~~I~~~~~I~ 544 (763)
T KOG3745|consen 494 LEIFKILLKFLGQEHVDYALETALAGIS-------------------------SAD----TRVEPNLYFLEVINKGDIIL 544 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------------------hhh----cCCCcchHHHHHHHHhhHHH
Confidence 999999999988 599999999955432 112 22345568999999999999
Q ss_pred HHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCC
Q 003238 617 AIVQQYFANSISRLLLPVDGAHAASCEEMATAMSSAEAAAYKGLQQCIETVMAEVERLLSAEQKPSDYKSPDDGIAPDHR 696 (837)
Q Consensus 617 ~llq~~~~~~i~~~i~p~~~~~~~~~~~~~~~~~~lE~~v~~gL~~~Id~l~~~v~~iL~t~Qkk~DF~P~~~~~~~~~~ 696 (837)
+||..||..++.|.+--.+...+.+.+.|+++++.||.+++.||+++|++|++|++++|.++|||+||+|++.+. ...
T Consensus 545 ~l~s~~~~~~~iP~i~~t~d~~~~~i~~kk~~i~~iE~~v~~gL~~tIn~li~~~~~il~~~qkk~df~p~s~~s--~~~ 622 (763)
T KOG3745|consen 545 QLMSKFFKSELIPLISVTPDKLSEVIQKKKSFIQSIEEKVAFGLDRTINVLIGHVKFILSTEQKKTDFKPDSINS--LTR 622 (763)
T ss_pred HHHHHHHhcccCccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcccCc--chh
Confidence 999999999877764433334456889999999999999999999999999999999999999999999966543 346
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhccccCccchhHHHhhHHHHHHHHHhcCCCchH
Q 003238 697 PTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLNHWQKFTFNPSGGLRLKRDITEYGEFVRSFNAPSVD 776 (837)
Q Consensus 697 ~T~aC~~vv~~L~~~~~~l~~~ldg~Nle~Fl~EIG~rl~~~L~~HlKkf~vS~~Ggi~Li~Dln~Y~~~i~~~~~p~l~ 776 (837)
.|++|++||++|..|+..+.+++||+||++|++|+|+|||+.|++|+|+|+||++|||.|+||+|+||+||.+|++|.+.
T Consensus 623 ~~~pa~~vVq~L~~~~~~l~~~~dg~nLd~~~~eig~rlf~~l~~hl~~~~~s~~Gal~licDvn~y~~~i~~~~~~~vl 702 (763)
T KOG3745|consen 623 DIEPAIRVVQFLGNHIEQLKGRLDGENLDVFLQEIGTRLFRLLLSHLQQFKVSTAGALLLICDVNEYRTFIHSLGQPSVL 702 (763)
T ss_pred hhHHHHHHHHHHHHHHHHHHcccCCchHHHHHHHHHHHHHHHHHHHHHHheeccccceeeeccHHHHHHHHHHhCcccHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhceeeeCCCchhhhhcCC---CCCHHHHHHHHhhhhhhhhhhHHHHHH
Q 003238 777 EKFELLGIMANVFIVAPESLSTLFEGT---PSIRKDAQRFIQLREDYKSAKLASRLS 830 (837)
Q Consensus 777 ~~Fe~LreL~nLfiV~pe~lk~l~~g~---~~~~~~i~~fIq~R~D~~~~k~~~~~~ 830 (837)
++|++||+|||||+|+|++++++|.|+ .+++++||+|||+|+||+.++..+.+.
T Consensus 703 ~~F~tL~~L~nLliV~pd~l~ev~k~~~la~f~~~~I~efv~lR~D~r~~~~~~~vk 759 (763)
T KOG3745|consen 703 PYFKTLKALANLLIVKPDNLEEVGKGKFLANFDREEIHEFVQLRTDFRIIKNVQKVK 759 (763)
T ss_pred HHHHHHHHHHHHHeeChhhHHHHhchhhhccccHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999999999999999999999876 778999999999999999988777665
No 3
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.37 E-value=1e-06 Score=107.86 Aligned_cols=571 Identities=17% Similarity=0.211 Sum_probs=319.0
Q ss_pred hhhcccchhhhhhhhhhhhhhhhhhcHHHHHHHHHH---HHhhhCCCCCCcccCCCCCCchhHHHHHHHHHHHHHhhhhh
Q 003238 160 SRISSVGQTAAKIGDHLQSADAQRVTASQTIDLIKY---LMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSFAEED 236 (837)
Q Consensus 160 ~~i~~V~~~~v~lGd~Le~~~~~R~ra~ea~~Li~~---~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~~L~~ia~~~ 236 (837)
+++..|-....+--.+|..+++-|.|-..|..-++- |..+... +..+|...+ . +.++.+|..+.+++
T Consensus 91 ~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~------v~~~~~~~d-~---~~~a~~l~~m~~sL 160 (766)
T PF10191_consen 91 EEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAE------VDDLFESGD-I---AKIADRLAEMQRSL 160 (766)
T ss_pred HHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHHhcCC-H---HHHHHHHHHHHHHH
Confidence 333333333334446788899989998888887773 5554321 334444422 3 34445555555443
Q ss_pred hcccCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhccCCchhHHHHHhhcCcch
Q 003238 237 IGRQGIQDMGNANASRGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFI 316 (837)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~Ie~~~e~~E~~LL~eF~~ay~~~d~~~M~~~A~iL~~fngg~~~i~~fV~k~~~Fi 316 (837)
.. +...|.|+..+..++.+.+.+|..+--+.-.+....|.+.-++|..|+....+....-+.|.+.|.--+
T Consensus 161 ~~---------l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l 231 (766)
T PF10191_consen 161 AV---------LQDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPL 231 (766)
T ss_pred HH---------HcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 022466788999999999999999999999999999999999999999999888888888877664211
Q ss_pred hhhccchhhhhhhccCCCCCCCcchhhhHHHHHHHHHHHHHhhHHHHhhcCCCchHHHHHHHHHHHHH---HHHHHHHHH
Q 003238 317 DVEVMNADVRLVLGDQGSQASPSNVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVLEQ---RVTAILDKL 393 (837)
Q Consensus 317 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~e~~iI~~VFp~p~~Vm~~fvqRIf~q---~I~~~i~~l 393 (837)
...|.-....+.. .....-|..||+.+...++.|.+-+..|||++..++..++-..+.- .+..+|+..
T Consensus 232 ------~~~W~~~~~~~~~---~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~a 302 (766)
T PF10191_consen 232 ------QRLWQEYCQSDQS---QSFAEWLPSFYDELLSLLHQELKWCSQVFPDESPVLPKLLAETLSALQPSFPSRLSSA 302 (766)
T ss_pred ------HHHHHHHhhhccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHH
Confidence 1223211111111 1234567899999999999999999999999988655555555532 245556665
Q ss_pred hcCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC---C---CcHHHHHHHHhhhhh---hhhHHHHHHHH
Q 003238 394 LVKPSLVNLPPMEEGGLLLYLRMLAVAYEKTQELARDLRTVGCG---D---LDIEGVTECLFTSHK---EEYPEHEQASL 464 (837)
Q Consensus 394 L~~a~~~s~~~~~~~~~~~yLr~L~~ly~~t~~lv~~L~~~~~~---~---~~l~~~~~~lF~~yl---~~Yl~~E~~~L 464 (837)
+..+ +...-|..|-.+|.-|..|++.|...... + ..+.+++.-+|+||. ..|-+.|.+.|
T Consensus 303 l~~~-----------~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~al~~PF~~~q~~Yg~lE~~~L 371 (766)
T PF10191_consen 303 LKRA-----------GPETKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEELLQALFEPFKPYQQRYGELERRFL 371 (766)
T ss_pred Hhhc-----------CchhhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 22345888999999999999988765321 1 225566777777764 57999999998
Q ss_pred HHHHHHHHHHHHHhhhhcccccCcccCCCCccccCCCccCCHHHHHHHHHHHHHHhhhhhhccCChhhHHHh---HHHHH
Q 003238 465 RQLYQAKIEELRSESQQLSESSGTIGRSKGASVASSPQQISVTVVTEFVRWNEEALSRCTLFSSQPAALAAN---VRAVF 541 (837)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ls~~va~~~l~~~~eal~R~~~l~~~~~~~~~~---~~~if 541 (837)
...+.....+.. .....-..+ .+-..++..++.+|+.||..|+. +-.++.- +..+|
T Consensus 372 ~~~L~~l~~~~~-------------------~~~d~v~~L-~~s~~k~f~lae~Av~RC~~fT~-G~~~~~Ll~Ald~~~ 430 (766)
T PF10191_consen 372 SAQLSALDLESA-------------------ELSDAVRRL-EESIPKLFGLAEEAVDRCIAFTG-GYGVPGLLKALDSIF 430 (766)
T ss_pred HHHHHhcccCCC-------------------cHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 776543211000 000000011 12334567889999999999985 2333332 22222
Q ss_pred HHHHH-------HHHHHH------------H--HHHHHHHHHHHHHHHhhhhh-hcccchhHHHHHHHHHH---------
Q 003238 542 TCLLD-------QVSQYI------------T--EGLERARDSLTEAAALRERF-VLGTSVSRRVAAAAASA--------- 590 (837)
Q Consensus 542 ~~Ll~-------~l~~~i------------~--~~le~a~~~l~~~~~~~~~~-~~~~~~~r~v~~~~~~a--------- 590 (837)
...++ .+.... + ..|..++..|..+..+..+. .+.......+.......
T Consensus 431 ~~y~~~~~~~l~~lr~~~~~~~~~~~~~~~eDWs~fQ~aL~LL~~~g~l~~rl~~fE~~l~~~l~~~~~~l~~~~~~~~~ 510 (766)
T PF10191_consen 431 SQYLSSLTATLRSLRKSCGLDSTATSSASSEDWSLFQNALQLLQTCGELLSRLSQFEQSLRSRLLELASKLLSSSFSSSS 510 (766)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Confidence 21111 111000 0 23455555554444332111 00000000000000000
Q ss_pred --HHHH--HhhccchhH-hHHHHHhhhhh--HHHHHHHHHHHhhhhhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 003238 591 --AEAA--AAAGESSFR-SFMVAVQRCGS--SVAIVQQYFANSISRLLLPVDGAHAASCEEMATAMSSAEAAAYKGLQQC 663 (837)
Q Consensus 591 --~e~~--~~~~e~~l~-~F~~~V~~a~~--i~~llq~~~~~~i~~~i~p~~~~~~~~~~~~~~~~~~lE~~v~~gL~~~ 663 (837)
.+.. ...+..+.. .-...+..... ....+..++... ... .|.....+.....+.++ ....-+..
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~l~~~~-~~~-~~~~~ll~~~~~~~~~l-------~~~~~~~v 581 (766)
T PF10191_consen 511 DTGEAASGDTRSSSPNPWKGYNYLAASRLAELPNKAEDLQSLS-EQA-SPSFSLLPEARAAVSRL-------NQQAQDLV 581 (766)
T ss_pred ccccccccccCcccccchHHHHhhccccHHHHHHHHHHHHHhh-hcc-CCccccchHHHHHHHHH-------HHHHHHHH
Confidence 0000 000000000 00001110000 001111121110 000 11111112223333322 22234456
Q ss_pred HHHHHHHHHHHHhcccCCCCCCC----CCC--C-CCCCCCCCHHHHHHHHHHHHHHHHHHHhccc---------------
Q 003238 664 IETVMAEVERLLSAEQKPSDYKS----PDD--G-IAPDHRPTNACTRVVAYLSRVLEAAFTALEG--------------- 721 (837)
Q Consensus 664 Id~l~~~v~~iL~t~Qkk~DF~P----~~~--~-~~~~~~~T~aC~~vv~~L~~~~~~l~~~ldg--------------- 721 (837)
.++++..|...|..--+-.-..- ... + ..+...|++--+.|-+||=..=.++.-.+..
T Consensus 582 ~d~l~~~i~~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLPq~LEp~~~~~~~al~~Al~~~~~~ 661 (766)
T PF10191_consen 582 FDVLFSPIRQQLKSVPSLPSWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLPQQLEPFAESDNSALAFALHAGKLP 661 (766)
T ss_pred HHHHHHHHHHHHhcCCcCcccccCCccccccCCCCccccChHHHHHHHHHHHHhhHHhhhhhhcCcchHHHHHHHhcCCC
Confidence 77888888888873322111111 110 1 1234568888999999987655544333221
Q ss_pred -------------chHHHHHHHHHHHHHHHHHHhhhcc-ccCccchhHHHhhHHHHHHHHHhcCCCchHHHHHHHHhhhc
Q 003238 722 -------------LNKQAFLTELGNRLHKGLLNHWQKF-TFNPSGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGIMAN 787 (837)
Q Consensus 722 -------------~Nle~Fl~EIG~rl~~~L~~HlKkf-~vS~~Ggi~Li~Dln~Y~~~i~~~~~p~l~~~Fe~LreL~n 787 (837)
.-.+..+..|+.+--..+++-+.+. ..|..|+-+|..|+.+..+++..++++. . ..|..+..
T Consensus 662 ~~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i~~i~~l~~~~~~QL~~Di~Yl~nVl~aLg~~~-~---~~L~~~~~ 737 (766)
T PF10191_consen 662 YPPESDEEAEEADDFADEWLGKVARATCALYLEQILEIPELSESGAKQLATDIDYLSNVLSALGLSP-P---PNLQQLVT 737 (766)
T ss_pred CCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHhCCCC-C---HHHHHHHH
Confidence 2246888999999999999997655 4578899999999999999999999742 1 23455556
Q ss_pred eeeeCCCchhhhhcCC
Q 003238 788 VFIVAPESLSTLFEGT 803 (837)
Q Consensus 788 LfiV~pe~lk~l~~g~ 803 (837)
++=.+|+...++..|-
T Consensus 738 ll~~~~~~~~~~~~~~ 753 (766)
T PF10191_consen 738 LLKAPPDQYAQVAKGL 753 (766)
T ss_pred HHcCCHHHHHHHHhcC
Confidence 6667788888877763
No 4
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.61 E-value=5e-05 Score=85.89 Aligned_cols=338 Identities=16% Similarity=0.259 Sum_probs=214.4
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHhhHHhhhhhhcccchhh
Q 003238 99 DALSSLF--KDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRK-------TLAELEKGVDGLFDSFARLDSRISSVGQTA 169 (837)
Q Consensus 99 ~~li~tF--e~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~-------~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~ 169 (837)
.-+.+.| |+++..|..+-..++.++.++..+..+.-+.+.. .+.+.+..+.+++.++.++.++=..--..+
T Consensus 8 ~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V 87 (383)
T PF04100_consen 8 DYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMV 87 (383)
T ss_pred HHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 8889999999999999999999999988888763 344455555555555555554444444455
Q ss_pred hhhhhhhhhhhhhhhcHHHHHHHHHHHHhhhCCCCCCcccCCCCCCchhHHHHHHHHHHHHHhhhhhhcccCcccCCCCc
Q 003238 170 AKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSFAEEDIGRQGIQDMGNAN 249 (837)
Q Consensus 170 v~lGd~Le~~~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~~L~~ia~~~~~~~~~~~~~~~~ 249 (837)
..|-.-+..+|.-+++=..++-.+++++.+.+....|..+ ... .+-.|||..++....++.- ... + .
T Consensus 88 ~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~---~~~-r~Y~e~a~~L~av~~L~~~-F~~--y------k 154 (383)
T PF04100_consen 88 QEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKEL---AKK-RQYKEIASLLQAVKELLEH-FKP--Y------K 154 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHc-CCHHHHHHHHHHHHHHHHH-HHc--c------c
Confidence 5677778888888999999999999999986532333222 111 1245667776666665532 110 0 1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hc-cHHHHHHHHHHHHhccCCch--hHHHHHhhcCcchhhhc
Q 003238 250 ASRGLEVAVANLQDYCNELENRLLSRFDAASQ------RR-ELSTMSECAKILSQFNRGTS--AMQHYVATRPMFIDVEV 320 (837)
Q Consensus 250 ~~~~~~~~~~~Ie~~~e~~E~~LL~eF~~ay~------~~-d~~~M~~~A~iL~~fngg~~--~i~~fV~k~~~Fid~~~ 320 (837)
..|........+......+-..+...|+..+. .+ ....|+++..|+..+..... .|+-|+++.
T Consensus 155 si~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~q-------- 226 (383)
T PF04100_consen 155 SIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQ-------- 226 (383)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHH--------
Confidence 12344567788888888899999999999872 11 34678888888888755432 467666642
Q ss_pred cchhhhhhhccCCCCCCCcchhhhHHHHHHHHHHHHHhhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 003238 321 MNADVRLVLGDQGSQASPSNVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVLEQRVTAILDKLLVKPSLV 400 (837)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~e~~iI~~VFp~p~~Vm~~fvqRIf~q~I~~~i~~lL~~a~~~ 400 (837)
+......+-.+ .+ ......+++=|.-++..++.=-..-..|||..-.|=..++..++. .-..-+..+|.+...
T Consensus 227 L~eY~~iF~~~--~e---~~~Ld~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~-~Tr~dL~~iL~~~~~- 299 (383)
T PF04100_consen 227 LKEYRRIFREN--DE---AASLDNIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCE-ITRKDLSEILSKRKS- 299 (383)
T ss_pred HHHHHHHHccc--cc---ccchhhHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHH-HHHHHHHHHHhhcCC-
Confidence 22111111111 11 112334555566666666666666789999987777766666554 445666777755321
Q ss_pred CCCCCccCCHHHHHHHHHHHHHHHHHHHHHhh-hcC-C----------CC-----CcHHHHHHHHhhhhhhhhHHHHHHH
Q 003238 401 NLPPMEEGGLLLYLRMLAVAYEKTQELARDLR-TVG-C----------GD-----LDIEGVTECLFTSHKEEYPEHEQAS 463 (837)
Q Consensus 401 s~~~~~~~~~~~yLr~L~~ly~~t~~lv~~L~-~~~-~----------~~-----~~l~~~~~~lF~~yl~~Yl~~E~~~ 463 (837)
..++...|.+|+. |..|=+.|. .|. . .+ ..+...+.+.|+|||.-|++.|-+.
T Consensus 300 ------~~dv~~Ll~aLq~----T~~FE~~L~~rF~~~~~~~~~~~~~~e~~~~~~~f~g~IS~~FepyL~iyv~~qdk~ 369 (383)
T PF04100_consen 300 ------ELDVKLLLKALQK----TLEFEKELAKRFAGSTDESQEIEKKKEMKEIAENFKGIISSCFEPYLSIYVDSQDKN 369 (383)
T ss_pred ------CCcHHHHHHHHHH----HHHHHHHHHHHhcccccccccccccccccccccccccchHHhhHhhHHHHHHHHHHH
Confidence 1345566665554 444444442 221 0 00 1367889999999999999999999
Q ss_pred HHHHHHHHHHH
Q 003238 464 LRQLYQAKIEE 474 (837)
Q Consensus 464 L~~~~~~~~~~ 474 (837)
|.+.+...++.
T Consensus 370 L~~~l~~~~~~ 380 (383)
T PF04100_consen 370 LSEKLDKFISE 380 (383)
T ss_pred HHHHHHHHHhh
Confidence 99888776543
No 5
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.0069 Score=70.99 Aligned_cols=261 Identities=12% Similarity=0.167 Sum_probs=169.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhh
Q 003238 97 EVDALSSLFKDSCRELIDLRKQID-------DRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTA 169 (837)
Q Consensus 97 ~~~~li~tFe~~i~eL~~L~~~~~-------~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~ 169 (837)
.+..+++-+. .|.++..+-+++. ++.+.|-.+-..-|..--..|......+..+-..+++|-..|.+.+..|
T Consensus 22 ~~~eli~d~t-~i~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~~L~~v~~da~el~~~i~nt~~lA 100 (773)
T KOG0412|consen 22 KVGELIRDLT-DISQIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAENLLTVEGDAKELTDAIKNTCVLA 100 (773)
T ss_pred HHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHH
Confidence 3456777666 5555555554444 4444443333333331125677777888999999999999999988889
Q ss_pred hhhhhhhhhhhhhhhcHHHHHHHHHHHHhhhCC-CCCCcccCCCCCCchhHHHHHHHHHHHHHhhhhhhcccCcccCCCC
Q 003238 170 AKIGDHLQSADAQRVTASQTIDLIKYLMEFNSS-PGDLMELSPLFSDDSRVAEAASIAEKLRSFAEEDIGRQGIQDMGNA 248 (837)
Q Consensus 170 v~lGd~Le~~~~~R~ra~ea~~Li~~~~eF~~~-~~~l~~ls~~f~dp~~~~eaA~ii~~L~~ia~~~~~~~~~~~~~~~ 248 (837)
-.+-++.+.+|..|.|..++...++-.-.+-.- .| + -..+.+ ++...||+-|+..+.+.+..+.. +..+..
T Consensus 101 e~Vs~kVr~lDla~~Rv~~clq~v~dvrdlk~C~~g-v--~~Al~s--eDyE~AA~~IhRflslD~~~i~~-~~~~~~-- 172 (773)
T KOG0412|consen 101 ETVSGKVRALDLAQNRVNECLQRVDDVRDLKNCIEG-V--DTALES--EDYEKAATHIHRFLSLDQALIES-RFAKQV-- 172 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHhh--hhHHHHHHHHHHHHhcCHHHHhh-hhhhcc--
Confidence 999999999999999999999988877666320 11 0 012211 12567899999988887654422 111111
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhccCCchhHHHHHhhcCcchhh-----hccch
Q 003238 249 NASRGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFIDV-----EVMNA 323 (837)
Q Consensus 249 ~~~~~~~~~~~~Ie~~~e~~E~~LL~eF~~ay~~~d~~~M~~~A~iL~~fngg~~~i~~fV~k~~~Fid~-----~~~~~ 323 (837)
.|+.......+.|+..++.++.-+=++|..|-+.+|...|-++-++.-...-..--+++|.. |+.. .+.+-
T Consensus 173 ~~ts~i~~~~~~L~~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~----ylc~iIA~kar~~l 248 (773)
T KOG0412|consen 173 VPTSEISDPYETLKEAKERLSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSV----YLCQIIASKARKNL 248 (773)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHH----HHHHHHHHHHHHHH
Confidence 11222345778899999999999999999999999999999999985555444444666643 2211 11111
Q ss_pred hhhhhhccCCCCCCCcchhhhHHHHHHHHHHHHHhhHHHHhhcCCCch
Q 003238 324 DVRLVLGDQGSQASPSNVARGLASLYKEITDTVRKEAATITAVFPSPN 371 (837)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~e~~iI~~VFp~p~ 371 (837)
.+ ...+..++.--....-..|-.+|+.|..+++...+||....+...
T Consensus 249 ~n-~~~~~~~~~r~qv~fad~Lt~lfe~va~IIe~n~piie~~YG~~~ 295 (773)
T KOG0412|consen 249 AN-VKAGMEDDNRRQVFFADTLTMLFEGVARIIEANQPILETYYGLKK 295 (773)
T ss_pred HH-HHhccccCchhHhHHHHHHHHHHHHHHHHHHcccHHHHHHhCchh
Confidence 11 011111110001233566788999999999999999999998654
No 6
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.68 Score=54.99 Aligned_cols=341 Identities=17% Similarity=0.244 Sum_probs=202.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhHHHhhHHhhhhhhcccchh
Q 003238 98 VDALSSLFKD--SCRELIDLRKQIDDRLFNLKKELSVQDS-------KHRKTLAELEKGVDGLFDSFARLDSRISSVGQT 168 (837)
Q Consensus 98 ~~~li~tFe~--~i~eL~~L~~~~~~k~~~Le~~v~~~e~-------~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~ 168 (837)
+.-+...|-. .+..+..|...++.++.++.+..+..=+ ++.+++.+.+..+.++..+++.+-++--+--..
T Consensus 22 v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~ 101 (793)
T KOG2180|consen 22 VEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAM 101 (793)
T ss_pred HHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444433 5666666666666666555555444433 455556666666666666555555444443445
Q ss_pred hhhhhhhhhhhhhhhhcHHHHHHHHHHHHhhhCCCCCCcccCCCCCCchhHHHHHHHHHHHHHhhhhhhcccCcccCCCC
Q 003238 169 AAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSFAEEDIGRQGIQDMGNA 248 (837)
Q Consensus 169 ~v~lGd~Le~~~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~~L~~ia~~~~~~~~~~~~~~~ 248 (837)
+..|-.-+..+|--+++-..++-.+++++...+....+..+ .+-..-.|||..++....+++-=.+ +
T Consensus 102 V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l----~~kr~y~e~a~~lqai~~ll~~F~~---Y------ 168 (793)
T KOG2180|consen 102 VQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNAL----LSKRSYGEAASPLQAILQLLNHFIA---Y------ 168 (793)
T ss_pred HHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HhhccHHHHHhHHHHHHHHHHHHHH---h------
Confidence 66677777788888888888888999998886422222212 1111245666666666665541110 0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH-------HHHHHHHHHHHhccCCc--hhHHHHHhhcCcchhhh
Q 003238 249 NASRGLEVAVANLQDYCNELENRLLSRFDAASQRREL-------STMSECAKILSQFNRGT--SAMQHYVATRPMFIDVE 319 (837)
Q Consensus 249 ~~~~~~~~~~~~Ie~~~e~~E~~LL~eF~~ay~~~d~-------~~M~~~A~iL~~fngg~--~~i~~fV~k~~~Fid~~ 319 (837)
...+......+.|.+.-..+-..+...|..++..++. ......-.++..+.|.. ..|+-|+.++=
T Consensus 169 k~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qqL------ 242 (793)
T KOG2180|consen 169 KSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQL------ 242 (793)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH------
Confidence 0123345677778888888888888899999888765 34555555555565543 35666666541
Q ss_pred ccchhhhhhhccCCCCCCCcchhhhHHHHHHHHHHHHHhhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 003238 320 VMNADVRLVLGDQGSQASPSNVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVLEQRVTAILDKLLVKPSL 399 (837)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~e~~iI~~VFp~p~~Vm~~fvqRIf~q~I~~~i~~lL~~a~~ 399 (837)
......+-++.+ ......+++-|.-++..++.--+.=..|||..-.|-..+...++++ -..-+..+|.+-.
T Consensus 243 --~ey~~IF~en~E-----~a~LDkidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~-Tr~~L~~Il~~~~- 313 (793)
T KOG2180|consen 243 --EEYEQIFRENEE-----AASLDKLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQ-TRKQLESILKRRK- 313 (793)
T ss_pred --HHHHHHHhccHh-----hhhhhhHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHHH-HHHHHHHHHHHhh-
Confidence 111111112111 1123346677888888887777777779998776665555544443 3344555554320
Q ss_pred CCCCCCccCCHHHHHHHHHHHHHHHHHHHHHh-hhcCCC----------C------CcHHHHHHHHhhhhhhhhHHHHHH
Q 003238 400 VNLPPMEEGGLLLYLRMLAVAYEKTQELARDL-RTVGCG----------D------LDIEGVTECLFTSHKEEYPEHEQA 462 (837)
Q Consensus 400 ~s~~~~~~~~~~~yLr~L~~ly~~t~~lv~~L-~~~~~~----------~------~~l~~~~~~lF~~yl~~Yl~~E~~ 462 (837)
++.+...+ -.+-.+|..|-+-| +.|+.+ . ..++..+.++|+||++.|++.+-+
T Consensus 314 ------~~~~v~ll----l~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek 383 (793)
T KOG2180|consen 314 ------KEPDVKLL----LFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEK 383 (793)
T ss_pred ------hCccHHHH----HHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhHHHH
Confidence 12333344 44455666666666 334210 0 146889999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 003238 463 SLRQLYQAKIEELR 476 (837)
Q Consensus 463 ~L~~~~~~~~~~~~ 476 (837)
.|.++++..+++..
T Consensus 384 ~l~ellek~v~e~~ 397 (793)
T KOG2180|consen 384 ELSELLEKFVSEEK 397 (793)
T ss_pred HHHHHHHHHHhhhc
Confidence 99988887776543
No 7
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=97.10 E-value=0.28 Score=58.82 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhc-------cccCccchhHHHhhHHHHHHHHHhcC
Q 003238 699 NACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLNHWQK-------FTFNPSGGLRLKRDITEYGEFVRSFN 771 (837)
Q Consensus 699 ~aC~~vv~~L~~~~~~l~~~ldg~Nle~Fl~EIG~rl~~~L~~HlKk-------f~vS~~Ggi~Li~Dln~Y~~~i~~~~ 771 (837)
.+...+|..+..++.-....+...+.+.|..++-.++-...+..+-+ ......+|=++.+|+...++++.++.
T Consensus 397 ~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~ 476 (566)
T PF06046_consen 397 EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG 476 (566)
T ss_dssp -HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68888888888888888888998989999988888888888888644 23456899999999999999999888
Q ss_pred -CCchHHHHHHHHhhhcee-eeCCCchhhhh----cCC-CCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 003238 772 -APSVDEKFELLGIMANVF-IVAPESLSTLF----EGT-PSIRKDAQRFIQLREDYKSAKLASRLSSLW 833 (837)
Q Consensus 772 -~p~l~~~Fe~LreL~nLf-iV~pe~lk~l~----~g~-~~~~~~i~~fIq~R~D~~~~k~~~~~~~~~ 833 (837)
...+...|..|..+..++ +-+|+.+..-+ ... -...+-+...+..|.|........++..+.
T Consensus 477 ~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R~D~~r~~~~~il~~~~ 545 (566)
T PF06046_consen 477 SKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQKYPDISEEHVEALLALRGDLSRSEVKEILEILR 545 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHCC-TT--SHHHHHHHCT-TT--HHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 456889999999999999 66778776443 332 234667899999999999887777766543
No 8
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=96.98 E-value=0.51 Score=55.67 Aligned_cols=164 Identities=17% Similarity=0.195 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Q 003238 653 EAAAYKGLQQCIETVMAEVERLLSAEQKPSDYKSPDDG-IAPDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTEL 731 (837)
Q Consensus 653 E~~v~~gL~~~Id~l~~~v~~iL~t~Qkk~DF~P~~~~-~~~~~~~T~aC~~vv~~L~~~~~~l~~~ldg~Nle~Fl~EI 731 (837)
+.-....++..++.++.+++..+..--+.+-+-..... ......+|+.-......|+.+...+..+|...-...++.+|
T Consensus 308 ~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~i 387 (494)
T PF04437_consen 308 EKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRIWRRI 387 (494)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 33344455555666666666655533332222111110 01123467776678889999999999999999999999999
Q ss_pred HHHHHHHHHHh-hhccccCccchhHHHhhHHHHHHHHHhcCCCchHHHHHHHHhhhceeeeCCCchhhh---h-------
Q 003238 732 GNRLHKGLLNH-WQKFTFNPSGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGIMANVFIVAPESLSTL---F------- 800 (837)
Q Consensus 732 G~rl~~~L~~H-lKkf~vS~~Ggi~Li~Dln~Y~~~i~~~~~p~l~~~Fe~LreL~nLfiV~pe~lk~l---~------- 800 (837)
...+=..|++. +...++|..||.++..|++....++..+. +.....|.-|+|.+.|+-.+++..+.+ .
T Consensus 388 a~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~-~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~ 466 (494)
T PF04437_consen 388 ASKLDDYLWESILMSNKFSRAGAAQLQFDMRALFSVFSQYT-PRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKN 466 (494)
T ss_dssp HHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHHHHTTS--TT-SGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHH
T ss_pred HHHHHHHHHHHhhhcCeeChhHHHHHHHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccc
Confidence 99999999997 58889999999999999988777666643 335689999999999999887654432 1
Q ss_pred -------c--CC-CCCHHHHHHHHhhh
Q 003238 801 -------E--GT-PSIRKDAQRFIQLR 817 (837)
Q Consensus 801 -------~--g~-~~~~~~i~~fIq~R 817 (837)
+ |- .+++.++..-++||
T Consensus 467 ~~~~~~l~~lgI~~Ls~~ea~~vL~rR 493 (494)
T PF04437_consen 467 ENARKLLEELGISHLSPSEARDVLYRR 493 (494)
T ss_dssp T--SHHHHHTT-SSS-HHHHHHHHHHH
T ss_pred hHHHHHHHHCCCCcCCHHHHHHHHHcc
Confidence 0 11 45677787777777
No 9
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=3.3 Score=47.06 Aligned_cols=117 Identities=17% Similarity=0.222 Sum_probs=71.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhccCCchh-------HHHHHhhcCcchhhhccchh
Q 003238 252 RGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSA-------MQHYVATRPMFIDVEVMNAD 324 (837)
Q Consensus 252 ~~~~~~~~~Ie~~~e~~E~~LL~eF~~ay~~~d~~~M~~~A~iL~~fngg~~~-------i~~fV~k~~~Fid~~~~~~~ 324 (837)
+.+.+++..+|.+-+++|.-.--....++..|+.+.-.++-.|+.....-.+. -..|+.|. +-|.....-.
T Consensus 171 aefAe~qkQlE~~edRLEAlaqPrltda~a~~ktd~AQd~r~I~irIgRfkqLelqY~~Vq~k~ikQl--Wedfd~kQ~a 248 (828)
T KOG4182|consen 171 AEFAERQKQLEDFEDRLEALAQPRLTDAFAEGKTDQAQDFRQIFIRIGRFKQLELQYRAVQKKFIKQL--WEDFDEKQGA 248 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHccChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHhcch
Confidence 44667888889888888887777888889999999888888887765433332 22333331 0010000000
Q ss_pred h--------hhhh--ccCC-CCCCCcchhhhHHHHHHHHHHHHHhhHHHHhhcCCCc
Q 003238 325 V--------RLVL--GDQG-SQASPSNVARGLASLYKEITDTVRKEAATITAVFPSP 370 (837)
Q Consensus 325 ~--------~~~~--~~~~-~~~~~~~~~~~l~~l~~~i~~~~~~e~~iI~~VFp~p 370 (837)
+ ...+ |++- +..+.+..-.-|-.+|+++..-|++|.+--...||+.
T Consensus 249 nklanersesqrlssgdEfQstssq~qfaq~LT~fYDeLL~~~eqe~KWCm~aF~dd 305 (828)
T KOG4182|consen 249 NKLANERSESQRLSSGDEFQSTSSQPQFAQFLTLFYDELLEHCEQEVKWCMNAFGDD 305 (828)
T ss_pred hhhhcchhhhhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 0 0011 1110 0001122234566899999999999999999999976
No 10
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=93.99 E-value=0.72 Score=51.03 Aligned_cols=126 Identities=18% Similarity=0.296 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcccchHHH----
Q 003238 651 SAEAAAYKGLQQCIETVMAEVERLLSAEQKPSDYKSPDDGIAPDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQA---- 726 (837)
Q Consensus 651 ~lE~~v~~gL~~~Id~l~~~v~~iL~t~Qkk~DF~P~~~~~~~~~~~T~aC~~vv~~L~~~~~~l~~~ldg~Nle~---- 726 (837)
.-|.++...++.-||-+|+-+ --|+.|.+. ...|+.-...++.||+..+..+-..|-.+-.+.
T Consensus 144 ~Ae~~I~~lv~~KIDe~lela---------~yDW~~~~~----~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~ 210 (311)
T PF04091_consen 144 AAEKRIFELVNSKIDEFLELA---------EYDWTPTEP----PGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFS 210 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----------TT------------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc---------ccceecCCC----CCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 445555666666666555221 125555432 235899999999999999977655555544433
Q ss_pred HHHHHHHHHHHHHHHh-hhccccCccchhHHHhhHHHHHHHHHhc-----CCCchHHHHHHHHhhhceeee
Q 003238 727 FLTELGNRLHKGLLNH-WQKFTFNPSGGLRLKRDITEYGEFVRSF-----NAPSVDEKFELLGIMANVFIV 791 (837)
Q Consensus 727 Fl~EIG~rl~~~L~~H-lKkf~vS~~Ggi~Li~Dln~Y~~~i~~~-----~~p~l~~~Fe~LreL~nLfiV 791 (837)
-+..|+.+|..+|+.- .|+ ||..|-..+--||.+-.+|+++. +.+.+.+.|.-||.+.+|++-
T Consensus 211 a~~his~~l~~~Ll~~~vk~--in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s 279 (311)
T PF04091_consen 211 ACDHISESLLDLLLSDDVKR--INMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLS 279 (311)
T ss_dssp HHHHHHHHHHHHHT-----------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhcCCcccc--cCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhc
Confidence 3556888888877532 444 55666667889999999999998 888999999999999999974
No 11
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=92.51 E-value=8 Score=42.37 Aligned_cols=189 Identities=14% Similarity=0.183 Sum_probs=111.9
Q ss_pred CCchhhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHhhH
Q 003238 79 ASSDAIKFTQGLAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHR---KTLAELEKGVDGLFDSF 155 (837)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~---~~l~~L~~~~~~~~~~f 155 (837)
+.|||.++..... |.. ..-...++.....|....+-|+.++ .+++.+-...|. .++.+|++.+..+...-
T Consensus 11 ~~FD~~~~~L~~l-~~~---~~~~~~i~~~~ekLs~~ldvVe~~L---~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~ 83 (291)
T PF10475_consen 11 EDFDPVRYELEKL-PED---ELDLEDIEELQEKLSHYLDVVEKKL---SREISEKSDSFFQAMSSVQELQDELEEALVIC 83 (291)
T ss_pred CCCCchHHHHHhC-CCc---cCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578866554322 222 1123446666666666666666665 445555555554 45668888888888888
Q ss_pred HhhhhhhcccchhhhhhhhhhhhhhhhhhcHHHHHHHHHHHHhhhCCCCCCcccCCCCCCchhHHHHHHHHHHHHHhhhh
Q 003238 156 ARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSFAEE 235 (837)
Q Consensus 156 ~~Ld~~i~~V~~~~v~lGd~Le~~~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~~L~~ia~~ 235 (837)
..+-..+..+-...+.-|=++-...++|++..+....++....+..... .+..+..+++ -..|-.++.....+..+
T Consensus 84 ~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~---~l~~ll~~~d-y~~Al~li~~~~~~l~~ 159 (291)
T PF10475_consen 84 KNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQS---RLQELLEEGD-YPGALDLIEECQQLLEE 159 (291)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCC-HHHHHHHHHHHHHHHHh
Confidence 8888888887777666666666667777776666666555555432111 1222222222 45677777777776654
Q ss_pred hhcccCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Q 003238 236 DIGRQGIQDMGNANASRGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSE 290 (837)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~Ie~~~e~~E~~LL~eF~~ay~~~d~~~M~~ 290 (837)
.. ...-+......++.+.+.++..|=..|..-...-|.+.-..
T Consensus 160 l~------------~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~ 202 (291)
T PF10475_consen 160 LK------------GYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSK 202 (291)
T ss_pred cc------------cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 31 12223456677777777777777777776555545444333
No 12
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=91.01 E-value=2.1 Score=47.86 Aligned_cols=115 Identities=14% Similarity=0.273 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhccCCchhHHHHHhhcCcchhhhccch---hhhhhhccCCCCCCC
Q 003238 262 QDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNA---DVRLVLGDQGSQASP 338 (837)
Q Consensus 262 e~~~e~~E~~LL~eF~~ay~~~d~~~M~~~A~iL~~fngg~~~i~~fV~k~~~Fid~~~~~~---~~~~~~~~~~~~~~~ 338 (837)
++.++.+..-+.++|+.|-+.+|.+++-++.+..-..+-..-.++.|.. |+....-.. ......+.......+
T Consensus 2 ~~a~~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~----ylc~~i~~~~r~~~~~~~~~~~~~~~~ 77 (331)
T PF08318_consen 2 DEARESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSK----YLCDIIAEQSRKLLDSATSGSSDSRSP 77 (331)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHH----HHHHHHHHHHHHHHHhhcccccccccc
Confidence 4567888889999999999999999999999998888766666777754 222211110 000011100011223
Q ss_pred cchhhhHHHHHHHHHHHHHhhHHHHhhcCCCchHHHHHHHHHHH
Q 003238 339 SNVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVL 382 (837)
Q Consensus 339 ~~~~~~l~~l~~~i~~~~~~e~~iI~~VFp~p~~Vm~~fvqRIf 382 (837)
...-..|-.+|+.|..+++...++|++.|+... |..+++++-
T Consensus 78 ~~~~~~lt~LFe~ia~ii~~h~~lI~~~yG~~~--~~~vi~~Lq 119 (331)
T PF08318_consen 78 VFYADALTKLFEHIATIIEQHQPLIEKYYGPGY--MVYVIEKLQ 119 (331)
T ss_pred ccHHHHHHHHHHHHHHHHHHccHHHHHHcCCcH--HHHHHHHHH
Confidence 445678889999999999999999999999655 444555443
No 13
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=88.79 E-value=6.8 Score=37.72 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhhhhh
Q 003238 104 LFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQR 183 (837)
Q Consensus 104 tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~~~R 183 (837)
.....++.|..=-+++++++.++-.+-...=..+...+.+++.-++.+-.+.+.|...+..+...++.=-++++.....=
T Consensus 30 d~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L 109 (132)
T PF10392_consen 30 DISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQL 109 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55666666666666666666666555555556677777788888888888888888888888888888888888888888
Q ss_pred hcHHHHHHHHHHHHhhh
Q 003238 184 VTASQTIDLIKYLMEFN 200 (837)
Q Consensus 184 ~ra~ea~~Li~~~~eF~ 200 (837)
+|..+|.+|++.-.-|.
T Consensus 110 ~rl~~t~~LLR~~~r~l 126 (132)
T PF10392_consen 110 ERLHQTSDLLRSVSRFL 126 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88999999998765553
No 14
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=87.37 E-value=6.7 Score=43.73 Aligned_cols=103 Identities=13% Similarity=0.255 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhccCCchhHHHHHhhcCcchhhhcc---chhhhhhhccCCCCCCC
Q 003238 262 QDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVM---NADVRLVLGDQGSQASP 338 (837)
Q Consensus 262 e~~~e~~E~~LL~eF~~ay~~~d~~~M~~~A~iL~~fngg~~~i~~fV~k~~~Fid~~~~---~~~~~~~~~~~~~~~~~ 338 (837)
+..++.+..-+.++|+.|-+.+|..+.-+|.+.+-..+-..-.++.|.. |+....- ........+.......+
T Consensus 2 ~~~~~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~----yic~~Ia~~ar~~~~~~~~~~~~~~~~ 77 (324)
T smart00762 2 DEARETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSK----YICDIIADKARSLLNELAGASDDTRAA 77 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHH----HHHHHHHHHHHHHhhcccccccccccc
Confidence 4567888999999999999999999999999998777666666666654 2221100 00000000110011122
Q ss_pred cchhhhHHHHHHHHHHHHHhhHHHHhhcCC
Q 003238 339 SNVARGLASLYKEITDTVRKEAATITAVFP 368 (837)
Q Consensus 339 ~~~~~~l~~l~~~i~~~~~~e~~iI~~VFp 368 (837)
...-..+-.+|+.|..+++...++|.+-|+
T Consensus 78 ~~~a~~lt~Lfe~ia~ii~~h~~~I~~~yG 107 (324)
T smart00762 78 VFYADTLTHLFENVATIIEQHQPVIEKYYG 107 (324)
T ss_pred chHHHHHHHHHHHHHHHHHhccHHHHHHcC
Confidence 345667889999999999999999999997
No 15
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=83.89 E-value=6.1 Score=37.77 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhh
Q 003238 103 SLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSAD 180 (837)
Q Consensus 103 ~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~ 180 (837)
..+=-|-+.|..-+..+.++++++...++..-+.-.++|+.+..++++..+-=+...+.++.|...+.+||+.++.++
T Consensus 32 D~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 32 DLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444557778888888889999999999999999999999999999999999999999999999999999999999887
No 16
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=82.64 E-value=38 Score=32.54 Aligned_cols=80 Identities=19% Similarity=0.222 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhh
Q 003238 102 SSLFKDSCRELI-DLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSAD 180 (837)
Q Consensus 102 i~tFe~~i~eL~-~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~ 180 (837)
+......|++|. ++++.+...-..|=.++...+..-. -+..+..+++.+..+|++|..+|..--..+.+.-.+|+++.
T Consensus 35 l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~-~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~ 113 (132)
T PF10392_consen 35 LKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELES-VLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLH 113 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 445556666663 5777788888888888888877777 89999999999999999999999998888888888888877
Q ss_pred hh
Q 003238 181 AQ 182 (837)
Q Consensus 181 ~~ 182 (837)
.-
T Consensus 114 ~t 115 (132)
T PF10392_consen 114 QT 115 (132)
T ss_pred HH
Confidence 43
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.85 E-value=1.3e+02 Score=35.87 Aligned_cols=84 Identities=11% Similarity=0.229 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhh-------hhhhhhcHHHH
Q 003238 117 KQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQS-------ADAQRVTASQT 189 (837)
Q Consensus 117 ~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~-------~~~~R~ra~ea 189 (837)
+..+.++..++..+...+......+.++.+.++.+.....+|+.+++.+-.....++..++. +...+..+...
T Consensus 191 ~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~ 270 (562)
T PHA02562 191 DHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSK 270 (562)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 33333444444555566666667788888888888888888888888887777777766544 55555555555
Q ss_pred HHHHHHHHhhh
Q 003238 190 IDLIKYLMEFN 200 (837)
Q Consensus 190 ~~Li~~~~eF~ 200 (837)
+....--..|+
T Consensus 271 l~~~~~~~~~~ 281 (562)
T PHA02562 271 IEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHh
Confidence 55555444444
No 18
>PF14923 CCDC142: Coiled-coil protein 142
Probab=74.42 E-value=57 Score=37.87 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHHHHHHhh--hccccCccchhHHHhhHHHHHHHHHh--
Q 003238 697 PTNACTRVVAYLSRVLEAAFTALE---GLNKQAFLTELGNRLHKGLLNHW--QKFTFNPSGGLRLKRDITEYGEFVRS-- 769 (837)
Q Consensus 697 ~T~aC~~vv~~L~~~~~~l~~~ld---g~Nle~Fl~EIG~rl~~~L~~Hl--Kkf~vS~~Ggi~Li~Dln~Y~~~i~~-- 769 (837)
|+.+-..|-.++..+..-+-+++. -..--.-+..+-..+-..-++|| +|.+||..||++|.+|-.+-++++.+
T Consensus 271 P~~pS~Yv~~~v~~vl~PVl~g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kIKFS~~GAlQL~~DF~~Vr~wl~~e~ 350 (450)
T PF14923_consen 271 PSAPSEYVEYVVETVLEPVLQGVQGLPPEAQIPALSQALTAMLEAWLDHILMHKIKFSLQGALQLRQDFGYVRDWLESEC 350 (450)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHccceeeHHHHHHHHHHHHHHHHHHHhhh
Confidence 444445555555555444433333 23333445566666777788886 78999999999999999999999976
Q ss_pred cCCC-ch------HHHHHHHHhhhceeeeCCCchhhhh
Q 003238 770 FNAP-SV------DEKFELLGIMANVFIVAPESLSTLF 800 (837)
Q Consensus 770 ~~~p-~l------~~~Fe~LreL~nLfiV~pe~lk~l~ 800 (837)
++.. ++ .+.|..+.-.+.+++=+|....++.
T Consensus 351 ~~Ls~e~rq~Ll~l~v~r~~dgv~~lLlqqP~~~~~~~ 388 (450)
T PF14923_consen 351 SGLSPELRQTLLSLEVFRRCDGVGLLLLQQPGPKISMT 388 (450)
T ss_pred ccCCHHHHHHHhccHHHHHHHHHHHHHhcCCCCccccc
Confidence 8874 33 4689999999999999998777664
No 19
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=69.78 E-value=2.7e+02 Score=34.04 Aligned_cols=282 Identities=15% Similarity=0.174 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhhhhhhcH
Q 003238 107 DSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTA 186 (837)
Q Consensus 107 ~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~~~R~ra 186 (837)
++++-=+.|+.+++++.-+...++=++=..-.+++..++..++.+-+..+++.++++..-....++-++-+.+..+|...
T Consensus 13 nt~~aRr~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~ 92 (618)
T PF06419_consen 13 NTLEARRNLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEEL 92 (618)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34545577888898888888888877778888899999999999999999999999988888888888888888888887
Q ss_pred HHHHHHHHHHHh-hhCCCCCCccc-CCCCCCchhHHHHHHHHHHHHHhhhhhhcccCcccCCCCcccccHHHHHHHHHHH
Q 003238 187 SQTIDLIKYLME-FNSSPGDLMEL-SPLFSDDSRVAEAASIAEKLRSFAEEDIGRQGIQDMGNANASRGLEVAVANLQDY 264 (837)
Q Consensus 187 ~ea~~Li~~~~e-F~~~~~~l~~l-s~~f~dp~~~~eaA~ii~~L~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~Ie~~ 264 (837)
..=..++..|.+ |.=+..+...| +....-++.--.|-.=+++++.=++.+.... -+.. +..-.+.+...+++.
T Consensus 93 ~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~~-~~~a----g~~iM~~~~~~~e~a 167 (618)
T PF06419_consen 93 ELKKKLLDAFLERFTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCKILLSTE-NQRA----GLEIMEQMSKYLERA 167 (618)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CchH----HHHHHHHHHHHHHHH
Confidence 777778876555 53111111111 1100111122222333334443333332110 0011 112345677788888
Q ss_pred HHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHhc-cCCchhHHHHHhhcCcchhhhccchhhhhhhccCC-----CC-
Q 003238 265 CNELENRLLSRFDAASQRR--ELSTMSECAKILSQF-NRGTSAMQHYVATRPMFIDVEVMNADVRLVLGDQG-----SQ- 335 (837)
Q Consensus 265 ~e~~E~~LL~eF~~ay~~~--d~~~M~~~A~iL~~f-ngg~~~i~~fV~k~~~Fid~~~~~~~~~~~~~~~~-----~~- 335 (837)
++.+=+-+..+|....... ....++++-..|.+= .--..|++.|.+.|.--+-..++..- -.|.++ |.
T Consensus 168 ~erl~~w~q~e~~~l~~~~~~~~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~~~F~~aL---t~g~~~~~~~rPIe 244 (618)
T PF06419_consen 168 YERLYRWVQRECRSLNLDNPEVSPLLRRALRYLRERPVLFNYCLDEFAEARSKALLRRFLDAL---TRGGPGGSPSRPIE 244 (618)
T ss_pred HHHHHHHHHHHHhhhhhcCcccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCCCCCCCCchh
Confidence 8888888888888773222 235788888877541 11235788887765422211111110 001111 10
Q ss_pred CCCcchhhhHHHHHHHHHHHHHhhHHHHhhcCCCch------------------HHHHHHHHHHHHHH---HHHHHHHHh
Q 003238 336 ASPSNVARGLASLYKEITDTVRKEAATITAVFPSPN------------------YVMSILVQRVLEQR---VTAILDKLL 394 (837)
Q Consensus 336 ~~~~~~~~~l~~l~~~i~~~~~~e~~iI~~VFp~p~------------------~Vm~~fvqRIf~q~---I~~~i~~lL 394 (837)
....+..+-+.+++.-|=.++-.|...+..+|.... ..+...+.+|++.. ++.+|+.++
T Consensus 245 l~AhDP~RYvGDmLAwvHq~~a~E~E~l~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~lld~i~~~l~rplk~RvEQvi 324 (618)
T PF06419_consen 245 LHAHDPLRYVGDMLAWVHQAIASEREFLESLFKFDEDEIAEGSSSGFDSNPWSEELINELLDRILEGLCRPLKIRVEQVI 324 (618)
T ss_pred hhccChHHHHHHHHHHHHHHhhhHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 011233556678888888899999999999997421 46777788888766 667888888
Q ss_pred cC
Q 003238 395 VK 396 (837)
Q Consensus 395 ~~ 396 (837)
..
T Consensus 325 ~s 326 (618)
T PF06419_consen 325 SS 326 (618)
T ss_pred Hc
Confidence 64
No 20
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=61.98 E-value=23 Score=42.16 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=32.3
Q ss_pred cCCCCCC-CCccccccccccCC----CCHhHHHHhhhhhcCCCccc-ccccccCCCC
Q 003238 14 SKSSSVS-SIPLILDIDDFKGD----FSFDALFGNLVNELLPSFQE-EEADSADGHG 64 (837)
Q Consensus 14 ~~~~~~~-~~~~~~~~~~f~~~----f~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 64 (837)
+++++++ =|-+++++.+=+.. =+|.+|+..++..++..++- ...-||.|++
T Consensus 285 ~~~dakk~LvklLinl~~~K~v~gItD~Ve~fl~d~s~~lvD~~~l~~~~~pg~g~~ 341 (557)
T PF01763_consen 285 KASDAKKRLVKLLINLSEMKHVGGITDVVESFLQDVSPSLVDQNRLFDTRQPGFGGA 341 (557)
T ss_pred cCCCHHHHHHHHHHhcccCcccCCchhhHHHHHHhcccccccccccCCCCCCCCCCC
Confidence 3444333 35566888887763 57888999999998875554 2333454444
No 21
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=61.41 E-value=1e+02 Score=31.78 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhh
Q 003238 99 DALSSLFKDSCRELIDLRKQID--DRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHL 176 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~--~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~L 176 (837)
..++..|.+--.+.+.|-+.+. .|++++-+..+..=.+|.+-+++|+++++.+--- .++.+-+--++|
T Consensus 46 v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~i----------Ltta~fqA~qKL 115 (272)
T KOG4552|consen 46 VNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVI----------LTTACFQANQKL 115 (272)
T ss_pred HHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3566666655555444444332 2334444444444456777788898888776432 133566788999
Q ss_pred hhhhhhhhcHHHHHHHHHHHHhhhC
Q 003238 177 QSADAQRVTASQTIDLIKYLMEFNS 201 (837)
Q Consensus 177 e~~~~~R~ra~ea~~Li~~~~eF~~ 201 (837)
.+++.-+.|++..-+||+|-+....
T Consensus 116 ksi~~A~krpvsSEelIKyAHrIS~ 140 (272)
T KOG4552|consen 116 KSIKEAEKRPVSSEELIKYAHRISK 140 (272)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 9999999999999999999888754
No 22
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=61.29 E-value=75 Score=27.70 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=43.0
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhccc
Q 003238 99 DALSSLF--KDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSV 165 (837)
Q Consensus 99 ~~li~tF--e~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (837)
+.+.+.| ..++.++..+..++...+.....+.+..=..+-..+..-.+.+..+-..+..|...++..
T Consensus 9 ~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l 77 (87)
T PF08700_consen 9 DEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSEL 77 (87)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666533 356888888888888877777777766666666666665555555555555555555543
No 23
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=60.11 E-value=50 Score=29.54 Aligned_cols=87 Identities=11% Similarity=0.163 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHH-HH
Q 003238 655 AAYKGLQQCIETVMAEVERLLSAEQKPSDYKSPDDGIAPDHRPTNACTRVVAYLSRVLEAAFTALE--GLNKQAFLT-EL 731 (837)
Q Consensus 655 ~v~~gL~~~Id~l~~~v~~iL~t~Qkk~DF~P~~~~~~~~~~~T~aC~~vv~~L~~~~~~l~~~ld--g~Nle~Fl~-EI 731 (837)
++..-+++..+.++++++-.. ++++.-|.+=.... ...+-.||.+|.+....+......... ++=+.+|-. -=
T Consensus 5 ~i~e~~~~e~s~LIEqiE~~i--~P~~S~F~CFa~~~--~~~~~~a~~kv~~W~~~k~k~~~~FV~RNk~W~T~~S~~tS 80 (100)
T PF06363_consen 5 YIDEYYNIEMSELIEQIEAFI--EPRPSVFKCFASKV--PTKIKTACDKVKSWVKNKMKSMLSFVERNKAWFTVVSAVTS 80 (100)
T ss_pred HHHHHHhhhHHHHHHHHHHHH--CCCCChHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHcchHhhHHHHHHH
Confidence 444558888888888888887 46666666543221 224678999999999999887655432 222222211 01
Q ss_pred HHHHHHHHHHhhhc
Q 003238 732 GNRLHKGLLNHWQK 745 (837)
Q Consensus 732 G~rl~~~L~~HlKk 745 (837)
......+++.||||
T Consensus 81 ~isIL~LV~~~~KK 94 (100)
T PF06363_consen 81 FISILLLVTKIFKK 94 (100)
T ss_pred HHHHHHHHHHHHhh
Confidence 23456678889887
No 24
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=59.86 E-value=73 Score=28.30 Aligned_cols=67 Identities=15% Similarity=0.256 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhhHHHhhHHhhhhhhcc
Q 003238 98 VDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDS-----------KHRKTLAELEKGVDGLFDSFARLDSRISS 164 (837)
Q Consensus 98 ~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~-----------~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~ 164 (837)
..|-++.+...+.+|..-+..+...++++..+.++... .|..+|..+.+.+..+.+..+.|..|+..
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888888888888887777777666655433222 36777777777777777777777666554
No 25
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=55.99 E-value=1e+02 Score=31.47 Aligned_cols=74 Identities=24% Similarity=0.212 Sum_probs=46.3
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH-HHHhhhhHHHhhHHhhhhhhcccchhhhh
Q 003238 99 DALSSL-FKDSCRELIDLRKQIDDRLFNLKKELSVQDSK-----HRKTLA-ELEKGVDGLFDSFARLDSRISSVGQTAAK 171 (837)
Q Consensus 99 ~~li~t-Fe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~-----h~~~l~-~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~ 171 (837)
+.+... .--.+.-+..+.+.+...+...+.-....|.. ...-|. ++...++...+.+..+.+.++.+-..+.+
T Consensus 52 K~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~~vd~~~~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsd 131 (204)
T PF04740_consen 52 KNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQSEVDSSSNAIIDEDFLESELKKKLNQLKEQIEDLQDEINSILSSVSD 131 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHH
Confidence 444444 34445555566666666665555544444431 244455 77888888888888998888877666655
Q ss_pred h
Q 003238 172 I 172 (837)
Q Consensus 172 l 172 (837)
|
T Consensus 132 i 132 (204)
T PF04740_consen 132 I 132 (204)
T ss_pred H
Confidence 5
No 26
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=52.17 E-value=24 Score=30.57 Aligned_cols=48 Identities=19% Similarity=0.382 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccc
Q 003238 118 QIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVG 166 (837)
Q Consensus 118 ~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~ 166 (837)
.++.|+..|+.+|...+... .++.+|..+++....+...|+.+++++.
T Consensus 15 ~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 15 AVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777776665554 5666777777777776666666666543
No 27
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=51.60 E-value=84 Score=26.97 Aligned_cols=66 Identities=18% Similarity=0.299 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhh
Q 003238 115 LRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSAD 180 (837)
Q Consensus 115 L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~ 180 (837)
|..+..+-.+.|+++..............|+..+..+-..=..|..+++..++.+..+-++++...
T Consensus 4 LE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 4 LEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555556666666666666667777777777777777777888888888888888888877653
No 28
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=49.44 E-value=92 Score=27.80 Aligned_cols=61 Identities=21% Similarity=0.421 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhc
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (837)
......|+++=.+|..+.+..+.|...+.... .+|.+.+.++.+.++.++..-..|..++.
T Consensus 21 ~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f----~~~~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 21 AQTLGRLNKTNEELLNLNDLSQQRLAEARERF----ARHTKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999998777655 57888888999999999888888777664
No 29
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.13 E-value=3e+02 Score=27.88 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 93 PLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELS 131 (837)
Q Consensus 93 ~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~ 131 (837)
|.|-..++++..|+..++.|......+-++...|.....
T Consensus 4 ~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~ 42 (218)
T cd07596 4 QEFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALG 42 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778999999999999998888888877766665433
No 30
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.70 E-value=67 Score=34.04 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhh
Q 003238 100 ALSSLFKDSCRELIDLRKQ-------IDDRLFNLKKE---LSVQDSKHRKTLAELEKGVDGLFDSFARLDSR 161 (837)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~-------~~~k~~~Le~~---v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~ 161 (837)
.-|.-.+..|..|+.|-.+ -+.++..|..+ -.+.|..|..++++|+++..++...-.+|...
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~s 296 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRNS 296 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566667777776655433 34455555442 24478899999999999999999888888753
No 31
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=47.29 E-value=4.5e+02 Score=29.38 Aligned_cols=86 Identities=13% Similarity=0.205 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhh-------hhhhhhhhhhhhhhhcHHH
Q 003238 116 RKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTA-------AKIGDHLQSADAQRVTASQ 188 (837)
Q Consensus 116 ~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~-------v~lGd~Le~~~~~R~ra~e 188 (837)
-..+......+..+.+..+.++.+.+.+-.+....+...|+.+++++....... ........++...|+++.-
T Consensus 16 p~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~~r~~~~~ 95 (338)
T PF04124_consen 16 PQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISEERKKASL 95 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555566666666666666666666666555555443333 3333344444444555555
Q ss_pred HHHHHHHHHhhhC
Q 003238 189 TIDLIKYLMEFNS 201 (837)
Q Consensus 189 a~~Li~~~~eF~~ 201 (837)
+..-+.-+.+...
T Consensus 96 ~l~~~~~l~diLE 108 (338)
T PF04124_consen 96 LLENHDRLLDILE 108 (338)
T ss_pred HHHHHHHHHHHHh
Confidence 5444455555543
No 32
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=44.86 E-value=2.1e+02 Score=33.09 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=71.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhh
Q 003238 94 LFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKK---ELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAA 170 (837)
Q Consensus 94 ~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~---~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v 170 (837)
..|+-...|..++.++++|...+..+..+..+|.. +...+..+-.+.+.+-.+.+..+-.....-+.++........
T Consensus 155 l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~ 234 (420)
T COG4942 155 LNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANES 234 (420)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34556788999999999999999999888888774 444555556666777777777888888888889999999999
Q ss_pred hhhhhhhhhhhh
Q 003238 171 KIGDHLQSADAQ 182 (837)
Q Consensus 171 ~lGd~Le~~~~~ 182 (837)
.|++.+.++...
T Consensus 235 ~L~~~Ias~e~~ 246 (420)
T COG4942 235 RLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHH
Confidence 999999988833
No 33
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=44.11 E-value=2.5e+02 Score=32.30 Aligned_cols=84 Identities=11% Similarity=0.234 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccch----hhhhhhhhhhhh
Q 003238 104 LFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQ----TAAKIGDHLQSA 179 (837)
Q Consensus 104 tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~----~~v~lGd~Le~~ 179 (837)
.+-..+.+++.-...++.+.++|+ .+|.+.+.-+...+++--...+.||+++|.... -+.+|=..|..+
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk-------~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLK-------EQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASM 288 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333344555544444455555444 566777777777788888888899999987521 133444444333
Q ss_pred h-----hhhhcHHHHHHHHH
Q 003238 180 D-----AQRVTASQTIDLIK 194 (837)
Q Consensus 180 ~-----~~R~ra~ea~~Li~ 194 (837)
. ....||++-.+.|.
T Consensus 289 EEK~~Yqs~eRaRdi~E~~E 308 (395)
T PF10267_consen 289 EEKMAYQSYERARDIWEVME 308 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 2 22455555555554
No 34
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=42.95 E-value=4.3e+02 Score=27.88 Aligned_cols=35 Identities=3% Similarity=0.086 Sum_probs=24.8
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 90 LAAPLFPEVDALSSLFKDSCRELIDLRKQIDDRLF 124 (837)
Q Consensus 90 ~~~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~ 124 (837)
+..|+|-..+.++...+..|++|..-.+.+-.+..
T Consensus 21 d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rk 55 (219)
T cd07621 21 DVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHK 55 (219)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567877788888888888887766665544443
No 35
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=42.93 E-value=1.7e+02 Score=33.41 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFD 153 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~ 153 (837)
+.-|+-..+.+.+|+......+..-+.=-++.+++|..|++....|++++..-+.
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~e 306 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELE 306 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666665555555556666666666666666666644433
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=42.75 E-value=2.2e+02 Score=30.10 Aligned_cols=76 Identities=13% Similarity=0.226 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhh
Q 003238 105 FKDSCRELIDLRKQIDDRLFNLKKELSVQ---DSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSAD 180 (837)
Q Consensus 105 Fe~~i~eL~~L~~~~~~k~~~Le~~v~~~---e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~ 180 (837)
+|+.+.+|..=-..+.+.+..|+.....+ +..|..++..|..++..+-...+..+.++...-..+-.|-+.|....
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k 217 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK 217 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334433333333344444444333222 44455555555555555555555555555554444444545444443
No 37
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=41.70 E-value=11 Score=36.19 Aligned_cols=96 Identities=14% Similarity=0.271 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhhhhhh
Q 003238 105 FKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRV 184 (837)
Q Consensus 105 Fe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~~~R~ 184 (837)
.+.-.++|..+.+.+++..-++-..==..=..-+.++....+.++.+......+...|..+-..+...=+.++..-..|.
T Consensus 28 Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~ 107 (133)
T PF06148_consen 28 LEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERK 107 (133)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666655554333210000011144555566666666666666666666665555555555665556666
Q ss_pred cHHHHHHHHHHHHhhh
Q 003238 185 TASQTIDLIKYLMEFN 200 (837)
Q Consensus 185 ra~ea~~Li~~~~eF~ 200 (837)
+..+....++.+..+.
T Consensus 108 ~l~~~k~~l~~~l~~~ 123 (133)
T PF06148_consen 108 ELREEKALLKLLLDIS 123 (133)
T ss_dssp HHHHHHHT-SSSSHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6666665555544443
No 38
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=41.01 E-value=1.6e+02 Score=34.55 Aligned_cols=54 Identities=15% Similarity=0.322 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhh
Q 003238 109 CRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRI 162 (837)
Q Consensus 109 i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i 162 (837)
+..+.........+..+++.........+.+++..|.+.-+.+...|+.|=.+|
T Consensus 69 l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~i 122 (475)
T PRK10361 69 VRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455566667777777777788888888888888888888876554
No 39
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.86 E-value=2.1e+02 Score=30.45 Aligned_cols=86 Identities=13% Similarity=0.234 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhhhhhhcHH
Q 003238 108 SCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTAS 187 (837)
Q Consensus 108 ~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~~~R~ra~ 187 (837)
+|++|+.--.+.+....++-+++...|.+- +-|.++.+..+.+.+......+.+..|-+....+.+.+..+...|.+..
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666655554 6677777777777788888888888888888888898988888888887
Q ss_pred HHHHHHH
Q 003238 188 QTIDLIK 194 (837)
Q Consensus 188 ea~~Li~ 194 (837)
+.+...+
T Consensus 81 ~~i~r~~ 87 (230)
T PF10146_consen 81 EKIQRLY 87 (230)
T ss_pred HHHHHHH
Confidence 7764443
No 40
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=39.81 E-value=2.5e+02 Score=29.25 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhhh
Q 003238 102 SSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADA 181 (837)
Q Consensus 102 i~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~~ 181 (837)
++.=-.++++...++++.+.++..|+.++...+.+|..++.+++.++-.--. .|+..++.. .++.+|+.-..--+
T Consensus 66 l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~---~LEke~~e~--~i~~l~e~a~~el~ 140 (206)
T PF14988_consen 66 LQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKA---RLEKEASEL--KILQLGERAHKELK 140 (206)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh--hHHHhHHHhhHHHH
Confidence 3333456777788899999999999999999999999999999988744433 454444322 34455655554444
Q ss_pred hhhcHHHHHHHHHHHHhhh
Q 003238 182 QRVTASQTIDLIKYLMEFN 200 (837)
Q Consensus 182 ~R~ra~ea~~Li~~~~eF~ 200 (837)
.+..|.+. .-+.+..+|.
T Consensus 141 ~k~~ale~-~A~~~l~e~~ 158 (206)
T PF14988_consen 141 KKAQALEL-AAKKSLDEFT 158 (206)
T ss_pred HHHHHHHH-HHHHHHHHHH
Confidence 55555554 2366777775
No 41
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=38.88 E-value=56 Score=29.72 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhh
Q 003238 108 SCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRI 162 (837)
Q Consensus 108 ~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i 162 (837)
.+.+|..-|+.++.|+.++-..+...| .-..+.++.+.+..++..|+.|...-
T Consensus 42 l~~eL~~~ck~~r~~i~~li~~~~dee--~l~~lL~~ND~L~~~l~~Y~~l~~~~ 94 (100)
T PF03127_consen 42 LIQELYESCKSMRPRIQRLIEEVEDEE--LLGELLQANDELNQALERYDRLVKGQ 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTCH--HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcHH--HHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 677899999999999999998887777 88999999999999999999987543
No 42
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=36.67 E-value=2.5e+02 Score=28.91 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhh
Q 003238 103 SLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKH---RKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHL 176 (837)
Q Consensus 103 ~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h---~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~L 176 (837)
.+.+..+.+|+.+....++.-..|-.+++..|++- ..++..|+.++..+...++.|-.++.........+-.|+
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 34566788888889999999999998888887764 567888888888888888888888877655554444444
No 43
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.56 E-value=6.4e+02 Score=34.27 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 102 SSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDS 135 (837)
Q Consensus 102 i~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~ 135 (837)
++..+..+.++..+-+++..++..|+++...++.
T Consensus 302 Le~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 302 LAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777778888888888888777654
No 44
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.98 E-value=3.5e+02 Score=29.05 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhHHHhhHHhhhhhhccc----chhhhhhhhhhhhhhhh
Q 003238 112 LIDLRKQIDDRLFNLKKELSVQDSKHR-----KTLAELEKGVDGLFDSFARLDSRISSV----GQTAAKIGDHLQSADAQ 182 (837)
Q Consensus 112 L~~L~~~~~~k~~~Le~~v~~~e~~h~-----~~l~~L~~~~~~~~~~f~~Ld~~i~~V----~~~~v~lGd~Le~~~~~ 182 (837)
++..-..+++-....+..|+++|.... +.+.++..+.+.+.+.+..-.++.+.+ -.....+-++++.++..
T Consensus 118 ~q~~~~~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~ 197 (261)
T cd07674 118 LQVQSQHLQKSRENYHSKCVEQERLRREGVPQKELEKAELKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEET 197 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555556666655541 334445455555544444444444332 12344566777777744
Q ss_pred h
Q 003238 183 R 183 (837)
Q Consensus 183 R 183 (837)
|
T Consensus 198 R 198 (261)
T cd07674 198 H 198 (261)
T ss_pred H
Confidence 4
No 45
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=34.92 E-value=2.3e+02 Score=26.19 Aligned_cols=45 Identities=20% Similarity=0.340 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhhHH--HhhHHhhhhhhcccchhhhhhhhhhhhhh
Q 003238 136 KHRKTLAELEKGVDGL--FDSFARLDSRISSVGQTAAKIGDHLQSAD 180 (837)
Q Consensus 136 ~h~~~l~~L~~~~~~~--~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~ 180 (837)
.|..+|..++..++.+ .+.+.+|+-.|+++....-.+..+|+.++
T Consensus 46 ~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 46 EHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3556666666666666 66677777777777766666766666665
No 46
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=33.92 E-value=2.6e+02 Score=24.08 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFD 153 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~ 153 (837)
+.|.+..+..+..+..+.+=+.+|. ..|.+|+++|.+|.++......
T Consensus 12 ~~l~~~~~~~~~~~~~l~~~~keRa--------~lE~~Yak~L~kl~~~~~~~~~ 58 (91)
T PF00611_consen 12 EVLFKRLKQGIKLLEELASFFKERA--------SLEEEYAKSLQKLAKKFKKKMK 58 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhcccc
Confidence 5788888888888888887777665 5689999999999999876655
No 47
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=33.78 E-value=3.5e+02 Score=30.30 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcc
Q 003238 106 KDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISS 164 (837)
Q Consensus 106 e~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~ 164 (837)
...++.+..=-+.++..++++-.++...+..-.+....|..-++...+.|.+|+..|-.
T Consensus 83 ~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~a 141 (333)
T PF05816_consen 83 KNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAA 141 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555566666666666666666666666666766677777777777755543
No 48
>PF15463 ECM11: Extracellular mutant protein 11
Probab=33.77 E-value=2.2e+02 Score=27.57 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLF 152 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~ 152 (837)
+-|+..|...+..|+..+.....+...++..+.+-+..=..+-..|.++++.+-
T Consensus 79 d~~l~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk 132 (139)
T PF15463_consen 79 DWFLEQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMK 132 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999998888877776666666666665443
No 49
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=33.48 E-value=4.4e+02 Score=25.45 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhh---hcccchhhhhhhhh
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSR---ISSVGQTAAKIGDH 175 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~---i~~V~~~~v~lGd~ 175 (837)
+++++..-.-...|..-.+.+..+-+.|.+.+++.|..-.+-+..+.+.- ..|...-+. |+.++.....+..-
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erq----k~~~k~ae~L~kv~els~~L~~~~~l 102 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQ----KRFAKFAEQLEKVNELSQQLSRCQSL 102 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777877878887777777776655544443322 222222222 33333333333333
Q ss_pred hhhhhhhhhcHHHHHHHHHHHHhhhC
Q 003238 176 LQSADAQRVTASQTIDLIKYLMEFNS 201 (837)
Q Consensus 176 Le~~~~~R~ra~ea~~Li~~~~eF~~ 201 (837)
| .+.+.+|..+++..-
T Consensus 103 L----------~~~v~~ie~LN~~LP 118 (131)
T PF10158_consen 103 L----------NQTVPSIETLNEILP 118 (131)
T ss_pred H----------HHHHHHHHHHHhhCC
Confidence 3 455677888888763
No 50
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.36 E-value=9.1e+02 Score=30.13 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=43.8
Q ss_pred HHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhhhhhhcHHHHHHHHH-HHHhhh
Q 003238 142 AELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTIDLIK-YLMEFN 200 (837)
Q Consensus 142 ~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~~~R~ra~ea~~Li~-~~~eF~ 200 (837)
.+|+..++.+-.+-++|+.|+..|--.+-..-..++.++++|.+-+-.++=+. .+.|..
T Consensus 440 ~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 36677788888888999999998865555556778899999988776655444 466654
No 51
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.10 E-value=3.3e+02 Score=32.05 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhccccCccchhHHHhhHHHHHHHHHhcCCC
Q 003238 723 NKQAFLTELGNRLHKGLLNHWQKFTFNPSGGLRLKRDITEYGEFVRSFNAP 773 (837)
Q Consensus 723 Nle~Fl~EIG~rl~~~L~~HlKkf~vS~~Ggi~Li~Dln~Y~~~i~~~~~p 773 (837)
|-++.++-|-.--...|.+-+.=++||--|==++--|+-..+-+...+=..
T Consensus 549 n~~SvvT~ivK~~LK~l~E~vRLqTf~rfG~qQvQvDc~fLq~~L~~~V~D 599 (636)
T KOG2346|consen 549 NQESVVTTIVKLCLKSLQEYVRLQTFNRFGFQQVQVDCQFLQAPLKEAVED 599 (636)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhcccceeeeehhHHHHHHHHHHHhch
Confidence 556677777777788888888888999888777888888877777665443
No 52
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=32.25 E-value=6.1e+02 Score=27.64 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=13.6
Q ss_pred hhhhhhhhhhhcHHHHHHH-HHHHHhhh
Q 003238 174 DHLQSADAQRVTASQTIDL-IKYLMEFN 200 (837)
Q Consensus 174 d~Le~~~~~R~ra~ea~~L-i~~~~eF~ 200 (837)
-+|.++. |..-.||+.+ +..+.|+.
T Consensus 186 AqL~n~k--R~~lKEa~~~~f~Al~E~a 211 (271)
T PF13805_consen 186 AQLSNIK--RQKLKEAYSLKFDALIERA 211 (271)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhh--HHHHHHHHHHHHHHHHHHH
Confidence 3455555 6666666655 22455553
No 53
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=31.83 E-value=6.4e+02 Score=27.93 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhHHHhhHHhhhhhhc
Q 003238 98 VDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDS--------------KHRKTLAELEKGVDGLFDSFARLDSRIS 163 (837)
Q Consensus 98 ~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~--------------~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (837)
+..-+.--+..|.+++..=++.++++..|+.++..++. .|...+.+..+.+..+.+.......+++
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~ 151 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLE 151 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777777777777777777754432 3445566777788888888888888888
Q ss_pred ccchhhhhhhhhhhhhhhhhh
Q 003238 164 SVGQTAAKIGDHLQSADAQRV 184 (837)
Q Consensus 164 ~V~~~~v~lGd~Le~~~~~R~ 184 (837)
..-+++..+=..|..+..+|-
T Consensus 152 q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 152 QMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776554443
No 54
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=31.52 E-value=4.8e+02 Score=25.61 Aligned_cols=77 Identities=13% Similarity=0.266 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHh-hhhhhcccchhhhhhhhh
Q 003238 99 DALSSLFKDSCRELID-LRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFAR-LDSRISSVGQTAAKIGDH 175 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~-L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~-Ld~~i~~V~~~~v~lGd~ 175 (837)
..+.......+..+.. |..++......++............++.++...+....+.+.. |+.+++.+.......++.
T Consensus 26 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 104 (202)
T PF01442_consen 26 DEIADRLAEEIEALSERLESELEELSDRLEERLDEVKERIEERIEELKNSLDSSTSELDESLSERAEELKERLEARAEE 104 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544 5555555555556555555566666666666666655555544 444444444444333333
No 55
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=30.52 E-value=3.8e+02 Score=24.40 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhHHHhhHHhhhhhhc
Q 003238 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKELSV-------QDSKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (837)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~-------~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (837)
.+-...+..+.+-..+-.++..++..|+..... ..+.-......|...+..++..|+.+..+..
T Consensus 43 ~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 113 (117)
T smart00503 43 ELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYR 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777788888877776552 2333444566788888888888888876654
No 56
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.46 E-value=6.6e+02 Score=26.40 Aligned_cols=169 Identities=12% Similarity=0.185 Sum_probs=88.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------HHHhhHHhhhhhhcc
Q 003238 93 PLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVD--------GLFDSFARLDSRISS 164 (837)
Q Consensus 93 ~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~--------~~~~~f~~Ld~~i~~ 164 (837)
+|++.+.+|+.....+-+-.+.|. .+-++.+..|..|.+.|.+|.++.. .....|..+-..+..
T Consensus 2 ~P~~a~~~l~~Rl~~~~~~~~el~--------~~~kERa~IE~~Yak~L~kLakk~~~~~~~e~g~~~~~w~~i~~e~e~ 73 (228)
T cd07650 2 SPYEATEILRIRLSQIKLVNTELA--------DWLQERRRLERQYVQGLRKLARRNEPLNKSLLGVFQNPWLTIESETEF 73 (228)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHH
Confidence 345555666666555544444444 4444557889999999999998753 233555555555555
Q ss_pred cchhhhhhhhhhhhhhhhhhcHHHHHHHHHHHHhhhCCC---CC------CcccCCCCCCchhHHHHHHHHHHHHHhhhh
Q 003238 165 VGQTAAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSP---GD------LMELSPLFSDDSRVAEAASIAEKLRSFAEE 235 (837)
Q Consensus 165 V~~~~v~lGd~Le~~~~~R~ra~ea~~Li~~~~eF~~~~---~~------l~~ls~~f~dp~~~~eaA~ii~~L~~ia~~ 235 (837)
++..=..|.++|..-.. .. +..|.+.. .. +....+-+.+ .....+++-++....+..
T Consensus 74 ~a~~H~~la~~l~~~ve---------~~---l~~~~~~~~~~~~l~~~q~l~~~~k~~~e--~~k~~~Kl~kk~~k~~~~ 139 (228)
T cd07650 74 IAASHGELAQRIETDVE---------EP---LRDFATSTEFMNTLDDDQNLSNLAKELDE--SQKKWDKLKKKHSKASSK 139 (228)
T ss_pred HHHHHHHHHHHHHHHHH---------HH---HHHHHhcCHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHH
Confidence 55554455555554331 11 12221110 00 0000000100 111223333333222211
Q ss_pred hhcccCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhccCC
Q 003238 236 DIGRQGIQDMGNANASRGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRG 301 (837)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~Ie~~~e~~E~~LL~eF~~ay~~~d~~~M~~~A~iL~~fngg 301 (837)
. -+.....++......|...-.-|+. ++.=|.+++...=.+|..|-.+
T Consensus 140 ~-----------------~~~~~~~l~~~~~~We~~~~~~~e~-fQ~leeeRl~~lk~~l~~y~~~ 187 (228)
T cd07650 140 A-----------------VSAAVSDLEEARQQWDSQAPFLFEL-LQAIDEERLNHLKDVLLQFQTH 187 (228)
T ss_pred H-----------------HHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhH
Confidence 1 1223677888888888888888885 4444777877777787777433
No 57
>PRK11637 AmiB activator; Provisional
Probab=29.44 E-value=3.7e+02 Score=31.05 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSK 136 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~ 136 (837)
..++..+....++|.....+++.+..+++....+.+.+
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~ 206 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQ 206 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777766655555443
No 58
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=29.28 E-value=3e+02 Score=24.61 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcc
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKE--LSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISS 164 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~--v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~ 164 (837)
..|-..+...+.+...|.+.+...+.+|..- .+.......-...+|...+..+...|+.+-.++..
T Consensus 29 ~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~ 96 (102)
T PF14523_consen 29 QELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAE 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888889999999998888876 56666667788899999999999999998776654
No 59
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=29.07 E-value=3.7e+02 Score=23.65 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=7.7
Q ss_pred cchhhhhhhhhhhhhh
Q 003238 165 VGQTAAKIGDHLQSAD 180 (837)
Q Consensus 165 V~~~~v~lGd~Le~~~ 180 (837)
+...+-.+|+.+..++
T Consensus 73 ~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 73 VFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334445555555544
No 60
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=27.89 E-value=5.4e+02 Score=27.65 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhHHHhhHHhhhhhh
Q 003238 98 VDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKH----------RKTLAELEKGVDGLFDSFARLDSRI 162 (837)
Q Consensus 98 ~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h----------~~~l~~L~~~~~~~~~~f~~Ld~~i 162 (837)
.+||.++.+.-|++....++.++.+.-.+...-++.+... ..++..|.+.++.+..+|+.-.+..
T Consensus 109 l~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~ 183 (246)
T cd07618 109 LDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQL 183 (246)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHHHHHhccccCccccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888888888888877776655554433 2344444455555555555444333
No 61
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=27.78 E-value=1.2e+03 Score=28.33 Aligned_cols=236 Identities=11% Similarity=0.113 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhcccCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------
Q 003238 217 SRVAEAASIAEKLRSFAEEDIGRQGIQDMGNANASRGLEVAVANLQDYCNELENRLLSRFDAASQRR------------- 283 (837)
Q Consensus 217 ~~~~eaA~ii~~L~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~Ie~~~e~~E~~LL~eF~~ay~~~------------- 283 (837)
.+...||..+.++...-...... . ....+-+...+..+....+.+...|-+.|+....-.
T Consensus 122 ~~~~~Aa~~L~~~~~~L~~l~~~-----~--~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~ 194 (593)
T PF06248_consen 122 GNYLDAADLLEELKSLLDDLKSS-----K--FEELKILKLLKDEYSELRENLQYQLSEEWERLVQWDSPSSKQLSSPEST 194 (593)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcC-----c--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecCCCcccccccccc
Confidence 34788999988887765432100 0 011233556777778888888888888888864421
Q ss_pred ---------cHH--HHHHHHHHHHhccCCchhHHHH---HhhcCcchhhhccchhhh---hhhccCC------CCC-CCc
Q 003238 284 ---------ELS--TMSECAKILSQFNRGTSAMQHY---VATRPMFIDVEVMNADVR---LVLGDQG------SQA-SPS 339 (837)
Q Consensus 284 ---------d~~--~M~~~A~iL~~fngg~~~i~~f---V~k~~~Fid~~~~~~~~~---~~~~~~~------~~~-~~~ 339 (837)
+.. .+.++-..|...+-=...++.| +-+| +++.-....... ....+.. ... ...
T Consensus 195 ~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~--ii~PlI~~p~~~~~~~~~~~~~~~~~l~~~~~~~~ 272 (593)
T PF06248_consen 195 LKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEH--IIKPLISHPSSIVSVEESEDGSVEITLSYEPDSSK 272 (593)
T ss_pred eEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHH--HHHHHhcCCCCcccccccCCCcceEEEEeeccccc
Confidence 111 1444445555332222222222 2111 111100000000 0000000 000 011
Q ss_pred chhhhHHHHHHHHHHHHHhhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccCCHHHHHHHHHH
Q 003238 340 NVARGLASLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVLEQRVTAILDKLLVKPSLVNLPPMEEGGLLLYLRMLAV 419 (837)
Q Consensus 340 ~~~~~l~~l~~~i~~~~~~e~~iI~~VFp~p~~Vm~~fvqRIf~q~I~~~i~~lL~~a~~~s~~~~~~~~~~~yLr~L~~ 419 (837)
...+....+|+.|..+++-=.+.+-.++..+..++..|-.-+..+.....|+..|..+--. + ..=|..+..
T Consensus 273 ~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~~l~~~~g~~i~~~ls~~lI~~~L~~aiP~--------~-~~~l~~f~~ 343 (593)
T PF06248_consen 273 DKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDSSLSESFGDHIWPRLSELLISNCLSPAIPT--------S-ASELQEFEE 343 (593)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHHHhhCcCcCCC--------C-HHHHHHHHH
Confidence 1234566889998888887666666665555678999988888888888889888765211 1 223333444
Q ss_pred HHHHHHHHHHHhhhcCCCCCcHHHHHHHHhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHhh
Q 003238 420 AYEKTQELARDLRTVGCGDLDIEGVTECLFTSHKEEYPE-HEQASLRQLYQAKIEELRSES 479 (837)
Q Consensus 420 ly~~t~~lv~~L~~~~~~~~~l~~~~~~lF~~yl~~Yl~-~E~~~L~~~~~~~~~~~~~~~ 479 (837)
+-..+.+|.+.|++.+.-..+- .-+..|.+ .+..|....+...+.+-+..+
T Consensus 344 v~~~~~~Fe~~L~~lgf~~~~~---------~~L~~~~~~i~~~f~~kr~~~iL~~AR~lm 395 (593)
T PF06248_consen 344 VLESVEEFEEALKELGFLSSDN---------TELSEFVDNIETHFANKRCQDILDKARDLM 395 (593)
T ss_pred HHHHHHHHHHHHHHcCCcCCCc---------hHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5556778888888876421110 11333444 466677777777776665543
No 62
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=27.51 E-value=3e+02 Score=24.79 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=16.7
Q ss_pred HHhhHHHHHHHHHhcCCCchHHHHHHHHhhhcee
Q 003238 756 LKRDITEYGEFVRSFNAPSVDEKFELLGIMANVF 789 (837)
Q Consensus 756 Li~Dln~Y~~~i~~~~~p~l~~~Fe~LreL~nLf 789 (837)
+..+++.|.+..+.| ......++.|+.++.++
T Consensus 71 ~~~~~~~Y~~~~~~~--~~~~~~~~~l~~~~~lL 102 (117)
T cd07959 71 LQNDLDWYRERGGAG--MNKDLLRRFIEVWTRLL 102 (117)
T ss_pred HHHHHHHHHHHhCcc--chHHHHHHHHHHHHHHH
Confidence 456677776665554 22234455555554443
No 63
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.08 E-value=2.7e+02 Score=29.19 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003238 100 ALSSLFKDSCRELIDLRK 117 (837)
Q Consensus 100 ~li~tFe~~i~eL~~L~~ 117 (837)
-.|+++-.-+.+|..+++
T Consensus 111 lvI~R~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 111 LVIRRLHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 467888888999998886
No 64
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.95 E-value=6e+02 Score=24.79 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=5.7
Q ss_pred chhhhhhhhhhhhhh
Q 003238 166 GQTAAKIGDHLQSAD 180 (837)
Q Consensus 166 ~~~~v~lGd~Le~~~ 180 (837)
..+|-|+..+...+.
T Consensus 107 d~~ae~~eRkv~~le 121 (143)
T PF12718_consen 107 DVKAEHFERKVKALE 121 (143)
T ss_pred HHHhHHHHHHHHHHH
Confidence 333333333333333
No 65
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.62 E-value=3.8e+02 Score=30.43 Aligned_cols=85 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhh
Q 003238 98 VDALSSLFKDSCRELIDLRKQ---IDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGD 174 (837)
Q Consensus 98 ~~~li~tFe~~i~eL~~L~~~---~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd 174 (837)
.+.+-..|..+-..|..|+.+ .-+|+..-|+-++.+=....+.....+.++.++..+++++...++.-++.-..|.+
T Consensus 229 ~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Ise 308 (359)
T PF10498_consen 229 KKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISE 308 (359)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q ss_pred hhhhhhhh
Q 003238 175 HLQSADAQ 182 (837)
Q Consensus 175 ~Le~~~~~ 182 (837)
+||.+...
T Consensus 309 eLe~vK~e 316 (359)
T PF10498_consen 309 ELEQVKQE 316 (359)
T ss_pred HHHHHHHH
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.46 E-value=3.5e+02 Score=28.16 Aligned_cols=8 Identities=0% Similarity=-0.134 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 003238 99 DALSSLFK 106 (837)
Q Consensus 99 ~~li~tFe 106 (837)
...+...|
T Consensus 92 ~~rlp~le 99 (206)
T PRK10884 92 RTRVPDLE 99 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 67
>PRK11637 AmiB activator; Provisional
Probab=26.29 E-value=1e+03 Score=27.35 Aligned_cols=74 Identities=8% Similarity=0.175 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhhhh
Q 003238 108 SCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQ 182 (837)
Q Consensus 108 ~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~~~ 182 (837)
.-++|.+++.+++....++.. ......+-.+.+..+..++..+....+.++..|+..-..+..+-.+++.....
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~-~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQ-QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333331 11222333444666666666666666666666666666665665555555443
No 68
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=26.06 E-value=1.2e+02 Score=27.94 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=7.6
Q ss_pred hcccchhhhhhhhhhhhh
Q 003238 162 ISSVGQTAAKIGDHLQSA 179 (837)
Q Consensus 162 i~~V~~~~v~lGd~Le~~ 179 (837)
+..+.++.-.++++|+++
T Consensus 83 L~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 83 LQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 333333344445555443
No 69
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.06 E-value=3e+02 Score=29.41 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=8.1
Q ss_pred hhhhhhhhhhhhhhh
Q 003238 169 AAKIGDHLQSADAQR 183 (837)
Q Consensus 169 ~v~lGd~Le~~~~~R 183 (837)
...+-++++.+...|
T Consensus 184 m~~~~~~~Q~lEe~R 198 (261)
T cd07648 184 MTDSCKRFQEIEESH 198 (261)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334566666666443
No 70
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.75 E-value=3.9e+02 Score=27.02 Aligned_cols=38 Identities=13% Similarity=0.310 Sum_probs=17.9
Q ss_pred HHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhh
Q 003238 140 TLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSAD 180 (837)
Q Consensus 140 ~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~ 180 (837)
++.++...+..+-.....+..+...++. .+-..|+..+
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i~~---~~~~El~~f~ 183 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEISE---RLKEELKRFH 183 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4455555554444444444444444322 3345555555
No 71
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=25.45 E-value=3.7e+02 Score=28.76 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhh
Q 003238 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKT---LAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHL 176 (837)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~---l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~L 176 (837)
.-+...|.-+.+++..+++..+.+.+||+.-...|+.-+.+ +..++..++.+++.-.=||+.+-. +- .-|
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdE---ke----~ll 163 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDE---KE----VLL 163 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH---HH----HHH
Confidence 34556677777788888888888888888877777776666 456777788888877766665554 11 126
Q ss_pred hhhhhhhhcHHHH
Q 003238 177 QSADAQRVTASQT 189 (837)
Q Consensus 177 e~~~~~R~ra~ea 189 (837)
+++.+.|.-|++-
T Consensus 164 esvqRLkdEardl 176 (333)
T KOG1853|consen 164 ESVQRLKDEARDL 176 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666665543
No 72
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.18 E-value=1.3e+03 Score=28.47 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhh
Q 003238 98 VDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQ 177 (837)
Q Consensus 98 ~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le 177 (837)
...++.|-+-+|.+-..-.+++.+..+.|+..--..=..-...|.+|-++++.+...-+++|.++..---..-|+-+++|
T Consensus 177 ~eal~~ta~~~igeaeaFaE~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE 256 (867)
T KOG2148|consen 177 MEALLGTAVLGIGEAEAFAERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIE 256 (867)
T ss_pred HHHHHhHHhhchhhHHHHHHHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999888876666666666788899999999999999999998876666666666666
Q ss_pred hhhhhhhcH----HHHHHHHHHHHhhhC----CCCCCccc-CCCCCCchhHHHHHH-HHHHHH
Q 003238 178 SADAQRVTA----SQTIDLIKYLMEFNS----SPGDLMEL-SPLFSDDSRVAEAAS-IAEKLR 230 (837)
Q Consensus 178 ~~~~~R~ra----~ea~~Li~~~~eF~~----~~~~l~~l-s~~f~dp~~~~eaA~-ii~~L~ 230 (837)
.+...-... ..-+.||+-+..|-+ +++....| ...|..|++-.||+. .++.|.
T Consensus 257 ~Ieekn~lie~~n~Nn~kL~eEl~kvin~L~vp~shi~aL~egdf~~a~~~ieact~aA~al~ 319 (867)
T KOG2148|consen 257 SIEEKNNLIEMQNVNNKKLIEELDKVINRLDVPSSHIAALTEGDFDEADQGIEACTWAAKALR 319 (867)
T ss_pred HHhcccchhhhhccchHHHHHHHHHHHHhccCcHHHHHhcccCCccccchhHHHHHHHHHHHH
Confidence 655321111 112456666555543 12222223 556778874444443 333343
No 73
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=25.01 E-value=2.3e+02 Score=34.54 Aligned_cols=36 Identities=17% Similarity=0.477 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003238 112 LIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKG 147 (837)
Q Consensus 112 L~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~ 147 (837)
....+++|.+|+.+...+..+..++|.++|+++.+.
T Consensus 362 aeeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k~~ 397 (669)
T PF08549_consen 362 AEEFRKRVAKKIADMNAEIEKMKARHAKRMAKFKRN 397 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456688999999999999999999999999988764
No 74
>PRK02224 chromosome segregation protein; Provisional
Probab=24.56 E-value=1.5e+03 Score=28.63 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=15.9
Q ss_pred HHhhhhhhcccchhhhhhhhhhhhhhhhhhcHHH
Q 003238 155 FARLDSRISSVGQTAAKIGDHLQSADAQRVTASQ 188 (837)
Q Consensus 155 f~~Ld~~i~~V~~~~v~lGd~Le~~~~~R~ra~e 188 (837)
++.|..++......+..+...|+.+...+.+...
T Consensus 648 ~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~ 681 (880)
T PRK02224 648 IEEAREDKERAEEYLEQVEEKLDELREERDDLQA 681 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444455555555544444433
No 75
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.49 E-value=7.3e+02 Score=24.92 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhhhhHHHhhHHhhh
Q 003238 136 KHRKTLAELEKGVDGLFDSFARLD 159 (837)
Q Consensus 136 ~h~~~l~~L~~~~~~~~~~f~~Ld 159 (837)
...+++..+...++.....|.+|.
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444544444444444
No 76
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=24.33 E-value=5.3e+02 Score=24.67 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhhHHHhhHHhhhhhhc
Q 003238 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQ--------DSKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (837)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~--------e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (837)
.+-+..+..+.+-..+-.++..++..|+...... .+........|.+.+..++..|+.+..+..
T Consensus 41 ~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~ 112 (151)
T cd00179 41 ELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYR 112 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777778887777766542 223344566788888888888888776655
No 77
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.21 E-value=2.4e+02 Score=36.92 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhccCCchhHHHHHhh
Q 003238 255 EVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVAT 311 (837)
Q Consensus 255 ~~~~~~Ie~~~e~~E~~LL~eF~~ay~~~d~~~M~~~A~iL~~fngg~~~i~~fV~k 311 (837)
..+.+.+..|++.||...++-|+.+|+.+.-..|+=.-.-|-.| |+++|.+.=++-
T Consensus 611 ~~~s~el~~~s~~f~~lAveLfd~cy~~de~~A~~LLt~el~~W-~~~tCL~LAv~a 666 (1381)
T KOG3614|consen 611 HEAAKELKTLSDEFEGLAVELFDECYSSDEARALQLLTYELENW-GNSTCLQLAVEA 666 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHhhc-ccccHHHHHHhc
Confidence 45788899999999999999999999998888888888888777 678887755443
No 78
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=24.13 E-value=1.8e+02 Score=28.17 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=12.4
Q ss_pred HHHHHhhhhHHHhhHHhhhhhh
Q 003238 141 LAELEKGVDGLFDSFARLDSRI 162 (837)
Q Consensus 141 l~~L~~~~~~~~~~f~~Ld~~i 162 (837)
+..|..+++++...-..|+.||
T Consensus 110 i~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 110 IDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHhhccC
Confidence 4445555666666556666553
No 79
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=24.03 E-value=5.2e+02 Score=29.42 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcc
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISS 164 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~ 164 (837)
..+.......|+|.++.+-.++++.+.|+.+..+.=.-+.+.|++ =-=.+..||+++|.
T Consensus 259 ~~~l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQE-------ERyR~erLEEqLNd 317 (455)
T KOG3850|consen 259 GAALDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQE-------ERYRYERLEEQLND 317 (455)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhH
Confidence 344667777888888888888999988887666544444444433 22355677777775
No 80
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=23.81 E-value=2.8e+02 Score=25.27 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=16.8
Q ss_pred hhhhHHHhhHHhhhhhhcccchh
Q 003238 146 KGVDGLFDSFARLDSRISSVGQT 168 (837)
Q Consensus 146 ~~~~~~~~~f~~Ld~~i~~V~~~ 168 (837)
.-+..+...|.+||+++-++++.
T Consensus 73 k~m~~i~~~FKQLEt~LKnlnt~ 95 (107)
T PRK15365 73 KDLKKIVSLFKQLEVRLKQLNAQ 95 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 33566678899999998877543
No 81
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=23.44 E-value=4e+02 Score=25.26 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHhhHHhhhhhhccc
Q 003238 96 PEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQD-SKHRKTLAELEKGVDGLFDSFARLDSRISSV 165 (837)
Q Consensus 96 ~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e-~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (837)
.+|+.++-.-...+.++..+..++.+...+|...-...+ ..-...+..+...+...++.++.+--.+..+
T Consensus 6 ~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~ 76 (120)
T PF09969_consen 6 EEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGVEVKDL 76 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCC
Confidence 367888888888888888888888888777765433322 2223445566666666666666655544443
No 82
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=23.24 E-value=8.1e+02 Score=30.99 Aligned_cols=148 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCCCccccccccccCCCCHhHHHH---hhhhhc---CCCcccccccccCCCCCCCCCCCCCCCCCCCCchhhhhhhccC
Q 003238 18 SVSSIPLILDIDDFKGDFSFDALFG---NLVNEL---LPSFQEEEADSADGHGNVSGNDTLPNGHKRASSDAIKFTQGLA 91 (837)
Q Consensus 18 ~~~~~~~~~~~~~f~~~f~~~~~~~---~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (837)
+.|-+| .+.-||.+.=.+++++. .+...- .|+...+-.|.+ ++.+||+.+.+.|+..-..+..
T Consensus 253 ~IP~LP--~~~Pnf~~~sdl~~~~~pvv~i~~Epsp~se~~~~n~~~~s---------~~~pa~~~~~~~~~~~~~~~~~ 321 (980)
T KOG0980|consen 253 QIPTLP--EDAPNFLRQSDLESYITPVVYIPSEPSPVSEDEEMNLPDTS---------ASTPAGHDPEPLDLFEAEPASD 321 (980)
T ss_pred cCCCCC--CCCcccccccchhhcCCCceecCCCCCCCCCcccccccccc---------ccccccCCCCCccccccCcccC
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcc
Q 003238 92 APLFPEVDALSSLFKDSCRELIDLRKQID-------DRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISS 164 (837)
Q Consensus 92 ~~~~~~~~~li~tFe~~i~eL~~L~~~~~-------~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~ 164 (837)
.|.-.-.++.-...+...+++.++.-+.. ..+.+++.++...|.+..+.=...+++..+.-
T Consensus 322 ~~~~sqkd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e------------ 389 (980)
T KOG0980|consen 322 PPNASQKDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE------------ 389 (980)
T ss_pred CcccccCChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------
Q ss_pred cchhhhhhhhhhhhhhhhhhcHHHHHHHHH
Q 003238 165 VGQTAAKIGDHLQSADAQRVTASQTIDLIK 194 (837)
Q Consensus 165 V~~~~v~lGd~Le~~~~~R~ra~ea~~Li~ 194 (837)
.|-+.|.-....|....+|..|+.
T Consensus 390 ------qLr~elaql~a~r~q~eka~~~~e 413 (980)
T KOG0980|consen 390 ------QLRNELAQLLASRTQLEKAQVLVE 413 (980)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHH
No 83
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.46 E-value=4.4e+02 Score=27.07 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=35.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 92 APLFPEVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKH 137 (837)
Q Consensus 92 ~~~~~~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h 137 (837)
+|-|.+++-++..|+..+..+.....++-++...|.....+.-..+
T Consensus 13 d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~ 58 (200)
T cd07624 13 SPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIF 58 (200)
T ss_pred CccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999999998888888888766665554444433
No 84
>KOG3390 consensus General control of amino-acid synthesis 5-like 1 [Transcription]
Probab=22.30 E-value=3.9e+02 Score=24.59 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhh
Q 003238 125 NLKKELSVQDSKHRKTL-----AELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQ 177 (837)
Q Consensus 125 ~Le~~v~~~e~~h~~~l-----~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le 177 (837)
+|.+..+.+...|...+ ..|..++.++.-.=..||..+-+...++..+|.|-+
T Consensus 18 elqEK~r~EAI~aA~~l~~alVdhlN~gVaqay~Nqkrld~E~k~l~~~~A~faKQT~ 75 (120)
T KOG3390|consen 18 ELQEKTRKEAIRAAARLADALVDHLNGGVAQAYVNQKRLDSEIKNLAITVAKFAKQTD 75 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444466666666554 467788888888888899888888777777766543
No 85
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=22.28 E-value=7.4e+02 Score=26.46 Aligned_cols=35 Identities=9% Similarity=0.217 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQ 133 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~ 133 (837)
.||-++.+..|++....++.++.+.-.+...-++.
T Consensus 110 ~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~ 144 (244)
T cd07595 110 SPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRY 144 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34555555555555555555555555444443333
No 86
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=22.28 E-value=7.9e+02 Score=29.18 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhh
Q 003238 97 EVDALSSLFKDSCRELIDLRKQIDDRLFNLKK---ELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIG 173 (837)
Q Consensus 97 ~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~---~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lG 173 (837)
+...|.+.|..-.+.|..+-.++..-...+.. ++...-.+-.....+.....+.+....+++-..+..++..+..+.
T Consensus 246 Eig~l~~s~n~m~~~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~~ 325 (553)
T PRK15048 246 EMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQAS 325 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777776666666666655555444443 222223334455556666666666666666666666655554443
Q ss_pred hhh
Q 003238 174 DHL 176 (837)
Q Consensus 174 d~L 176 (837)
+.-
T Consensus 326 ~~~ 328 (553)
T PRK15048 326 QLA 328 (553)
T ss_pred HHH
Confidence 333
No 87
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.17 E-value=5.2e+02 Score=28.78 Aligned_cols=8 Identities=13% Similarity=-0.014 Sum_probs=3.1
Q ss_pred CCHhHHHH
Q 003238 35 FSFDALFG 42 (837)
Q Consensus 35 f~~~~~~~ 42 (837)
+|+.+++.
T Consensus 54 ~sl~~~~~ 61 (325)
T PF08317_consen 54 PSLEDYVV 61 (325)
T ss_pred CCHHHHHH
Confidence 33333333
No 88
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=22.04 E-value=4.6e+02 Score=25.76 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=22.4
Q ss_pred chhhhhhhccCCCCChhHHHHHHHHH--HHHHHHHHHHH
Q 003238 81 SDAIKFTQGLAAPLFPEVDALSSLFK--DSCRELIDLRK 117 (837)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~li~tFe--~~i~eL~~L~~ 117 (837)
||-.+|.+| +++-|++-|| ...+++..|..
T Consensus 13 fDHrpvIqg-------EI~~FvkEFE~KRgdRE~~~L~~ 44 (145)
T PF14942_consen 13 FDHRPVIQG-------EIRYFVKEFEEKRGDREVRVLEN 44 (145)
T ss_pred cCchHHHHH-------HHHHHHHHHHHccCcHHHHHHHH
Confidence 566666666 8899999999 66777766654
No 89
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.60 E-value=4.7e+02 Score=22.53 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=33.6
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhh
Q 003238 119 IDDRLFNLK---KELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGD 174 (837)
Q Consensus 119 ~~~k~~~Le---~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd 174 (837)
=+.++.+|- +..+..|.+|...+..|...+.+.-..-..|..++..+...+..+=+
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554 34566677777777777777766666666666666655444444433
No 90
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.55 E-value=4.7e+02 Score=29.11 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=7.1
Q ss_pred CCCCHhHHHHh
Q 003238 33 GDFSFDALFGN 43 (837)
Q Consensus 33 ~~f~~~~~~~~ 43 (837)
.++|+.+++..
T Consensus 47 ~~~sl~~~v~A 57 (312)
T smart00787 47 EDCSLDQYVVA 57 (312)
T ss_pred CCCCHHHHHHH
Confidence 45777777655
No 91
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=21.37 E-value=9.4e+02 Score=29.81 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q 003238 648 AMSSAEAAAYKGLQQCIETVMAEVERLLSAEQKPSDYKSPDDGIAPDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAF 727 (837)
Q Consensus 648 ~~~~lE~~v~~gL~~~Id~l~~~v~~iL~t~Qkk~DF~P~~~~~~~~~~~T~aC~~vv~~L~~~~~~l~~~ldg~Nle~F 727 (837)
+++.+-+-|-.+++..++.+.+||++.+..+ +|+|.+.+ .+.+.-+..+-...+...+... .|...+-..|
T Consensus 513 vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE----~W~P~S~~----e~hs~SvVEvfri~~eTvd~ff-~L~~~~~~~~ 583 (677)
T PF05664_consen 513 VESLISNLVKRWIQEQLERLNEWVDRAIKQE----KWNPRSKE----ERHSPSVVEVFRIFNETVDQFF-QLPWPMHADF 583 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCCcCCCC----CCCcchHHHHHHHHHHHHHHHH-cCCCCCchHH
Confidence 4555667788999999999999999998643 69998753 2345555555555555555543 3455666778
Q ss_pred HHHHHHHHHHHH
Q 003238 728 LTELGNRLHKGL 739 (837)
Q Consensus 728 l~EIG~rl~~~L 739 (837)
++++...|-+.|
T Consensus 584 l~~L~~gld~~l 595 (677)
T PF05664_consen 584 LQALSKGLDKAL 595 (677)
T ss_pred HHHHHHHHHHHH
Confidence 888887776544
No 92
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.35 E-value=1e+03 Score=25.38 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGV 148 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~ 148 (837)
..|.......++-++.+.+=+.+|. ..|.+|+++|.+|.++.
T Consensus 8 ~~L~~r~k~g~~~~~el~~f~keRa--------~IEe~Yak~L~kLakk~ 49 (261)
T cd07648 8 DVLYHNMKHGQIAVKELADFLRERA--------TIEETYSKALNKLAKQA 49 (261)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh
Confidence 5788888899888888888777775 36799999999999876
No 93
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.32 E-value=3.9e+02 Score=28.86 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcc
Q 003238 103 SLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISS 164 (837)
Q Consensus 103 ~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~ 164 (837)
...|..+..-.+..-+++.+++.|..+|++.--+=.+.-.+|+.-.+.--+-|.+||.+++.
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~ 104 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSG 104 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555666677888888888887765555444445555555556677788887764
No 94
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=21.04 E-value=4.5e+02 Score=23.49 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhccccCcc--chhHHHhhHHHHHHHHHhcCCCchHHHHHHHHhhhcee
Q 003238 734 RLHKGLLNHWQKFTFNPS--GGLRLKRDITEYGEFVRSFNAPSVDEKFELLGIMANVF 789 (837)
Q Consensus 734 rl~~~L~~HlKkf~vS~~--Ggi~Li~Dln~Y~~~i~~~~~p~l~~~Fe~LreL~nLf 789 (837)
.+...+.+|+.++.++.. --+-++.++|.|.+- ..|.+....+.|+.++.++
T Consensus 49 ~~~~~~~~~~~~~~~~~a~~~i~~~~~~~n~~~~~----~~p~~~~~~~~l~~~~~lL 102 (117)
T cd07958 49 KTIKKVTEDIERLRFNTAIAALMELVNALYKYKKK----DAQHAAVLREALETLVLLL 102 (117)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcc----ccchHHHHHHHHHHHHHHH
Confidence 344455555555555432 122244555666431 2234445555555555443
No 95
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.03 E-value=9.9e+02 Score=25.54 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLK 127 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le 127 (837)
.||.++.+.-+++...+++.++.|.-++.
T Consensus 136 ~pL~~~L~~d~k~i~k~RKkle~~RLd~D 164 (242)
T cd07600 136 AKLRETLNTSFQKAHKARKKVEDKRLQLD 164 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555544333
No 96
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=20.95 E-value=5e+02 Score=25.31 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHHHHHhhHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccCCHHHHHHHHH
Q 003238 341 VARGLASLYKEITDTVRKEAATITAVFPSPN--YVMSILVQRVLEQRVTAILDKLLVKPSLVNLPPMEEGGLLLYLRMLA 418 (837)
Q Consensus 341 ~~~~l~~l~~~i~~~~~~e~~iI~~VFp~p~--~Vm~~fvqRIf~q~I~~~i~~lL~~a~~~s~~~~~~~~~~~yLr~L~ 418 (837)
....|.+-|.+|+..++.+-+.+.--+.... .+-..+-..+..+.|+=|++.++-.+...++ ..++.+.
T Consensus 4 ~L~eLR~~f~~Ik~~~q~kD~~~~vll~~~ll~~~k~~~gC~~l~ell~FYLd~V~p~a~~~~~---------~~k~~i~ 74 (137)
T smart00188 4 MLRELRAAFSRVKTFFQMKDQLDNILLTESLLEDFKGYLGCQALSEMIQFYLEEVMPQAENHGP---------DIKEHVN 74 (137)
T ss_pred HHHHHHHHHHHHHHHHHccchHhhHhhhHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHhcCCc---------chhhhHH
Confidence 4566788899999988877666544444310 1223344556667777888888866644332 2244444
Q ss_pred HHHHHHHHHHHHhhh
Q 003238 419 VAYEKTQELARDLRT 433 (837)
Q Consensus 419 ~ly~~t~~lv~~L~~ 433 (837)
.+=+....+-++|..
T Consensus 75 Sl~~~f~~lk~~l~~ 89 (137)
T smart00188 75 SLGEKLKTLRLRLRR 89 (137)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444455543
No 97
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.94 E-value=9.7e+02 Score=25.04 Aligned_cols=150 Identities=17% Similarity=0.248 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcc-cchhhhhhhhhhh
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISS-VGQTAAKIGDHLQ 177 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~-V~~~~v~lGd~Le 177 (837)
+.|+...+.+++.|.....+..+|+ ...+.+.-++++..+..+...|+.=+.+-+. .++.+.+.|+..+
T Consensus 18 ~~F~k~MD~svk~l~~~~~e~~kk~----------~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~~y~ 87 (207)
T cd07669 18 KAFSKKMDDSVLQLSNVASELVRKH----------LGGFRKEFQKLGNAFQAISHSFQLDPPYSSEALNNAISHTGRTYE 87 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------cccccHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHH
Confidence 4566666666666666655555555 3666777777888788887777542222222 3445556676666
Q ss_pred hh-----hhhhhcHHHHHHHHHHHHhhhCCCCCCcccCCCCCCchhHHHHHH-HHHHHHHhhhhhhcccCcccCCCCccc
Q 003238 178 SA-----DAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAAS-IAEKLRSFAEEDIGRQGIQDMGNANAS 251 (837)
Q Consensus 178 ~~-----~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~-ii~~L~~ia~~~~~~~~~~~~~~~~~~ 251 (837)
.+ +.|| .+-+-|+.++++|. |-| ..|.|.-..+++|. =++...+++.+-
T Consensus 88 ~IG~~faeQpk---~D~~pl~d~L~~Y~---GlL----~~fPDii~v~K~A~~KvkE~~k~~~e~--------------- 142 (207)
T cd07669 88 AVGEMFAEQPK---NDLFQMLDTLSLYQ---GLL----SNFPDIIHLQKGAFAKVKESQRMSDEG--------------- 142 (207)
T ss_pred HHHHHHHhcch---hhhhHHHHHHHHHh---Ccc----cCCccHHHHHHHHHHHHHHHHHhhHHh---------------
Confidence 54 3333 34477888888884 433 23444433444442 122222222110
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003238 252 RGLEVAVANLQDYCNELENRLLSRFDAASQRR 283 (837)
Q Consensus 252 ~~~~~~~~~Ie~~~e~~E~~LL~eF~~ay~~~ 283 (837)
+.-..-...|.+-|+.+=-+++.|-.......
T Consensus 143 Km~~~~~~~v~~R~~~isya~~AEm~HFh~~r 174 (207)
T cd07669 143 RMDQDEADGIRKRCRVVGFALQAEMNHFHQRR 174 (207)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 00011334677777888777777777654443
No 98
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.71 E-value=9.3e+02 Score=24.87 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 106 KDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLA 142 (837)
Q Consensus 106 e~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~ 142 (837)
+..++.|+.=.+....|..+++.+..+...+|...+.
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ 135 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQ 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444433
No 99
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=20.71 E-value=2.2e+02 Score=27.66 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhh
Q 003238 118 QIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKI 172 (837)
Q Consensus 118 ~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~l 172 (837)
....+..++++.....+..=..-|.+..++++.++..|..+-..|+.--..+..+
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~l 91 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIREL 91 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666677778888899999999999887777654444444
No 100
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.68 E-value=3.6e+02 Score=33.86 Aligned_cols=91 Identities=14% Similarity=0.242 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhc--cccCccchhHHHhhHHHHHHHHHhcCCCch
Q 003238 698 TNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLNHWQK--FTFNPSGGLRLKRDITEYGEFVRSFNAPSV 775 (837)
Q Consensus 698 T~aC~~vv~~L~~~~~~l~~~ldg~Nle~Fl~EIG~rl~~~L~~HlKk--f~vS~~Ggi~Li~Dln~Y~~~i~~~~~p~l 775 (837)
..++++++-.|-.++..+-. ....=++..|.++-..+-+.|+.|++. ..+|..|+++++-|+-.+++.+..+=.+..
T Consensus 805 rdYa~E~l~~lV~VhaEvf~-iap~Ll~kiL~~~ve~i~d~L~~l~~~~v~s~S~nG~lQi~vdl~~l~~~l~~Ylt~~a 883 (934)
T KOG2347|consen 805 RDYAKEALHNLVAVHAEVFA-IAPQLLDKILGETVEGISDELLRLFSCDVQSFSANGALQIMVDLEYLEDVLGPYLTKDA 883 (934)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcceeeeeeHHHHHHHHHHhccHHH
Confidence 45666666666555544321 244566778888888888999999988 678899999999999999999998877777
Q ss_pred HHHHH-HHHhhhcee
Q 003238 776 DEKFE-LLGIMANVF 789 (837)
Q Consensus 776 ~~~Fe-~LreL~nLf 789 (837)
...|. +|-.|.+.+
T Consensus 884 ~~slkqale~l~~~~ 898 (934)
T KOG2347|consen 884 KESLKQALEALSECL 898 (934)
T ss_pred HHHHHHHHHHhhhhc
Confidence 76665 444444444
No 101
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=20.55 E-value=4.2e+02 Score=22.82 Aligned_cols=42 Identities=36% Similarity=0.418 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGV 148 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~ 148 (837)
+.|.+..+..++.++.+..=+.+|. +.|.+|+++|.+|.++.
T Consensus 12 ~~L~~~~~~~~~~~~~~~~f~~~Ra--------~iE~eYak~L~kL~~~~ 53 (87)
T smart00055 12 EALLSRLKNGLRLLEDLKKFIRERA--------KIEEEYAKKLQKLSKKL 53 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhh
Confidence 5788888888888887777666663 56799999999998873
No 102
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=20.51 E-value=3.9e+02 Score=26.42 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchh
Q 003238 100 ALSSLFKDSCREL---IDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQT 168 (837)
Q Consensus 100 ~li~tFe~~i~eL---~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~ 168 (837)
..|.|+-.|++-+ ..-+.+...++.+|-..-...|++.-+.=+.|-.+.+.-.++...||+.+..||..
T Consensus 3 ~~It~w~~ALryv~~~v~~n~~~~~~Ir~Li~~Q~~~Er~w~~~Re~l~~k~~~r~e~~k~l~~~l~s~g~~ 74 (150)
T PF10454_consen 3 STITTWPAALRYVMKTVAQNPEFLQRIRRLIKEQHDHERQWWEGREALIAKQKARAEKKKKLDEVLRSVGGG 74 (150)
T ss_pred hhhhcHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4577777777655 34467788888888888888888888888888888888888999999999988773
No 103
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=20.42 E-value=6.3e+02 Score=22.69 Aligned_cols=39 Identities=23% Similarity=0.432 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhH
Q 003238 112 LIDLRKQIDDRLFNLKKEL-SVQDSKHRKTLAELEKGVDG 150 (837)
Q Consensus 112 L~~L~~~~~~k~~~Le~~v-~~~e~~h~~~l~~L~~~~~~ 150 (837)
+.....+++.+++++..+. ..+..+|-++|..|.++++.
T Consensus 6 ~~~~~~ev~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~ 45 (87)
T PF12709_consen 6 LEESQKEVEKAVEKVARELHALYSSKHETKVKALKKSYEA 45 (87)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 3344555555555555543 34455566666665554443
No 104
>PF15469 Sec5: Exocyst complex component Sec5
Probab=20.41 E-value=8.6e+02 Score=24.26 Aligned_cols=140 Identities=9% Similarity=0.126 Sum_probs=65.6
Q ss_pred hhHHhhhhhhcccchhhhhhhhhhhhhhhhhhcHHHHHHHHHHHHhhhCCCCCCcccCCCCCCchhHHHHHHHHHHHHHh
Q 003238 153 DSFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSF 232 (837)
Q Consensus 153 ~~f~~Ld~~i~~V~~~~v~lGd~Le~~~~~R~ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~~L~~i 232 (837)
...+.|++.|+.+.+.+..+..-|-.-...-.+...|..+|+-+..|..-++. |..-....+ -..+..--++...+
T Consensus 40 ~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~r~~flF~LP~~---L~~~i~~~d-y~~~i~dY~kak~l 115 (182)
T PF15469_consen 40 SGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQRNRFLFNLPSN---LRECIKKGD-YDQAINDYKKAKSL 115 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHcCc-HHHHHHHHHHHHHH
Confidence 44667777777777777665444444333444455666666666664431121 111000000 11112111222222
Q ss_pred hhhhhcccCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhccCCchhHHHHH
Q 003238 233 AEEDIGRQGIQDMGNANASRGLEVAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYV 309 (837)
Q Consensus 233 a~~~~~~~~~~~~~~~~~~~~~~~~~~~Ie~~~e~~E~~LL~eF~~ay~~~d~~~M~~~A~iL~~fngg~~~i~~fV 309 (837)
-..... ..+-+..+...+++..+.+.+.|.+++.... .+.+.-.++...|.+++-...-|-.|+
T Consensus 116 ~~~~~~-----------~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~--~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 116 FEKYKQ-----------QVPVFQKVWSEVEKIIEEFREKLWEKLLSPP--SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 211000 0122344445555555555555555555433 466667777788888865444444444
No 105
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.33 E-value=4.3e+02 Score=28.59 Aligned_cols=45 Identities=7% Similarity=0.095 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhhHHHhhHHhh
Q 003238 114 DLRKQIDDRLFNLKKELSVQDSKH-----RKTLAELEKGVDGLFDSFARL 158 (837)
Q Consensus 114 ~L~~~~~~k~~~Le~~v~~~e~~h-----~~~l~~L~~~~~~~~~~f~~L 158 (837)
.....+++-..+.+..|+++|+.- .+.|.+...+++.+-+.|...
T Consensus 127 ~~~~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~ 176 (269)
T cd07673 127 SITQALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLY 176 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555554332 233444444444444444333
No 106
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=20.22 E-value=1.3e+02 Score=27.42 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCccchhHHHhhHHHHHHHHHhcCCCch-HHHHHHHHhhhceeeeCCCchhhh---hc
Q 003238 726 AFLTELGNRLHKGLLNHWQKFTFNPSGGLRLKRDITEYGEFVRSFNAPSV-DEKFELLGIMANVFIVAPESLSTL---FE 801 (837)
Q Consensus 726 ~Fl~EIG~rl~~~L~~HlKkf~vS~~Ggi~Li~Dln~Y~~~i~~~~~p~l-~~~Fe~LreL~nLfiV~pe~lk~l---~~ 801 (837)
-.+.-||..+|+.|+.. +-..+..-|+.+-.-+..-.+++++-+.+.. ...|.-+++.++|+.++-..+... ++
T Consensus 5 qlf~~i~~~~fN~ll~~--~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~~~~~l~~l~Qa~~lL~~~k~~~~d~~~~~~ 82 (105)
T PF01843_consen 5 QLFHYINASLFNSLLLR--RKYCSWSKGVQIRYNLSELEDWARSHGLEEAAEEHLQPLSQAANLLQLRKSTLQDWDSLRE 82 (105)
T ss_dssp HHHHHHHHHHHHHHHCH--SS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH-HHHCHHHHHHHHHCCC--SSHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCC--CCccccccHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcCcchhHHHHHHH
Confidence 34556788888888863 3338888999999999999999988888876 999999999999999954444433 22
Q ss_pred CC-CCCHHHHHHHHh
Q 003238 802 GT-PSIRKDAQRFIQ 815 (837)
Q Consensus 802 g~-~~~~~~i~~fIq 815 (837)
.- ...+..|+.-+.
T Consensus 83 ~c~~Ln~~Qi~~iL~ 97 (105)
T PF01843_consen 83 TCPSLNPAQIRKILS 97 (105)
T ss_dssp CTTTS-HHHHHHHHC
T ss_pred HcccCCHHHHHHHHH
Confidence 22 445555655443
Done!