Query 003238
Match_columns 837
No_of_seqs 174 out of 308
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:15:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hr0_A COG4; conserved oligome 98.2 2.3E-05 7.7E-10 82.6 16.2 223 601-827 18-260 (263)
2 2fji_1 Exocyst complex compone 97.7 0.03 1E-06 62.5 31.0 132 700-832 219-366 (399)
3 3n1e_A Vacuolar protein sortin 93.1 2.5 8.6E-05 39.8 14.8 77 696-772 49-128 (141)
4 3fhn_A Protein transport prote 86.4 3.2 0.00011 49.1 11.6 96 696-794 560-659 (706)
5 2a2f_X Exocyst complex compone 75.0 19 0.00063 38.7 11.7 102 683-791 207-318 (325)
6 2d2s_A Exocyst complex compone 74.0 80 0.0027 32.0 19.6 165 256-455 65-233 (235)
7 2b1e_A Exocyst complex compone 70.2 25 0.00086 40.6 12.2 98 285-382 120-221 (564)
8 3mq9_A Bone marrow stromal ant 57.6 27 0.00093 39.0 9.2 93 89-182 341-440 (471)
9 2xdj_A Uncharacterized protein 50.7 97 0.0033 26.3 9.2 62 104-165 10-71 (83)
10 3swy_A Cyclic nucleotide-gated 50.6 52 0.0018 24.8 6.5 44 118-161 2-45 (46)
11 2akf_A Coronin-1A; coiled coil 47.2 26 0.00088 23.5 3.8 28 104-131 3-30 (32)
12 4akv_A Sorting nexin-33; trans 47.0 1.9E+02 0.0066 31.4 13.6 177 98-298 186-368 (386)
13 1ykh_B RNA polymerase II holoe 45.4 99 0.0034 28.5 9.2 55 103-157 53-128 (132)
14 2v66_B Nuclear distribution pr 43.2 1.8E+02 0.006 26.1 10.0 61 99-159 34-97 (111)
15 2pft_A Exocytosis protein; hel 43.2 1.4E+02 0.0047 34.4 12.2 44 347-396 202-245 (571)
16 1hx1_B BAG-1, BAG-family molec 41.3 49 0.0017 29.6 6.1 67 106-180 7-76 (114)
17 3vmx_A Voltage-gated hydrogen 41.3 96 0.0033 23.5 6.6 31 106-136 3-33 (48)
18 1yke_B RNA polymerase II holoe 36.8 1.1E+02 0.0037 29.0 8.2 47 116-162 87-133 (151)
19 3a2a_A Voltage-gated hydrogen 34.8 52 0.0018 25.5 4.4 32 105-136 9-40 (58)
20 3swf_A CGMP-gated cation chann 33.8 83 0.0028 26.1 5.8 46 118-163 4-49 (74)
21 3plt_A Sphingolipid long chain 30.8 4.3E+02 0.015 26.7 12.6 80 100-200 97-177 (234)
22 2bez_C E2 glycoprotein; coiled 30.5 2.3E+02 0.008 23.5 9.5 67 99-165 8-74 (77)
23 1wrd_A TOM1, target of MYB pro 29.4 89 0.003 27.5 5.9 55 107-163 43-97 (103)
24 3r2p_A Apolipoprotein A-I; amp 29.3 3.9E+02 0.013 25.6 12.4 94 99-194 70-165 (185)
25 3qb5_K Translin-associated pro 27.9 2.2E+02 0.0076 29.7 9.6 78 99-180 33-112 (290)
26 3hrn_A Transient receptor pote 26.2 67 0.0023 25.7 3.9 45 146-190 6-50 (64)
27 3oja_B Anopheles plasmodium-re 26.1 2.1E+02 0.0073 32.5 10.1 28 138-165 522-549 (597)
28 3swh_A MUNC13-1, protein UNC-1 26.1 1.8E+02 0.0063 31.1 8.8 100 643-743 157-256 (341)
29 1wyy_A E2 glycoprotein; membra 24.7 4.1E+02 0.014 24.7 9.4 68 99-166 21-88 (149)
30 3oja_B Anopheles plasmodium-re 24.5 3.1E+02 0.011 31.1 11.1 8 223-230 568-575 (597)
31 3ghg_A Fibrinogen alpha chain; 24.4 1.7E+02 0.0057 33.1 8.0 51 99-149 49-99 (562)
32 4gif_A Polycystic kidney disea 23.4 50 0.0017 24.7 2.5 36 146-181 7-42 (45)
33 2olt_A Hypothetical protein; s 23.2 3.9E+02 0.013 26.1 10.3 62 117-179 160-223 (227)
34 3o0z_A RHO-associated protein 22.6 5.1E+02 0.018 24.8 12.1 84 97-180 38-131 (168)
35 1zva_A E2 glycoprotein; membra 21.6 1.8E+02 0.0063 24.0 5.7 60 126-188 5-68 (77)
36 1i6z_A BAG-family molecular ch 21.4 2.4E+02 0.0083 26.0 7.2 67 106-180 17-86 (135)
37 1ez3_A Syntaxin-1A; three heli 21.0 4.3E+02 0.015 23.2 9.8 60 100-159 47-115 (127)
38 2efl_A Formin-binding protein 20.7 6.1E+02 0.021 25.6 11.6 16 170-185 215-230 (305)
39 2qyw_A Vesicle transport throu 20.6 1.7E+02 0.0059 25.5 6.0 68 97-166 7-76 (102)
40 1l8d_A DNA double-strand break 20.6 4.2E+02 0.014 22.9 9.4 76 101-176 11-101 (112)
41 4ioe_A Secreted protein ESXB; 20.3 2.2E+02 0.0077 23.4 6.6 27 106-132 15-41 (93)
42 2v0o_A FCHO2, FCH domain only 20.1 5.4E+02 0.019 25.7 10.9 20 168-187 196-215 (276)
No 1
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=98.21 E-value=2.3e-05 Score=82.63 Aligned_cols=223 Identities=13% Similarity=0.203 Sum_probs=151.2
Q ss_pred hhHhHHHHHhhhhhHHHHHHHHHH---HhhhhhccCCCCcchhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-----
Q 003238 601 SFRSFMVAVQRCGSSVAIVQQYFA---NSISRLLLPVDGAHAASCEEMATAMSS---AEAAAYKGLQQCIETVMA----- 669 (837)
Q Consensus 601 ~l~~F~~~V~~a~~i~~llq~~~~---~~i~~~i~p~~~~~~~~~~~~~~~~~~---lE~~v~~gL~~~Id~l~~----- 669 (837)
....|+-.+|..+....++....+ ..+.. ..|.........++...++.. ..++....++.||..+.+
T Consensus 18 ~~~~Flv~LNnld~s~eyi~rL~~~l~~~l~~-~Fp~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~~~ikp 96 (263)
T 3hr0_A 18 AKMSFLVTLNNVEVCSENISTLKKTLESDCTK-LFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKP 96 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhhHhheeccHHHHHHHHHHHHHHHHHHHHH-hCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345798899888776665554433 33322 234311111112222333333 333344556666666554
Q ss_pred HHHHHHhcccCCCCCCCCCCCCC-CC-CCCCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhccc
Q 003238 670 EVERLLSAEQKPSDYKSPDDGIA-PD-HRPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLNHWQKFT 747 (837)
Q Consensus 670 ~v~~iL~t~Qkk~DF~P~~~~~~-~~-~~~T~aC~~vv~~L~~~~~~l~~~ldg~Nle~Fl~EIG~rl~~~L~~HlKkf~ 747 (837)
.+.-++. .-...+|.+.+++.. .+ ..| .-...+.-+.....-.+..|...|-+.++.-+...+=+.|=+.+.+.+
T Consensus 97 rLr~~l~-~f~~~~y~l~eee~~~~e~~d~--~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~~~ 173 (263)
T 3hr0_A 97 QVQPWIN-SFFSVSHNIEEEEFNDYEANDP--WVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKST 173 (263)
T ss_dssp HHHHHHH-GGGGSCBSCCHHHHHHHHHSCC--SHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHH-HHhcccccCCHhHHhhhhcccH--HHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5566664 455567777543210 00 012 235556666667777788999999999999988888888888888999
Q ss_pred cCccchhHHHhhHHHHHHHHHhcCCCchHHHHHHHHhhhceeeeC-CCchhhhhc---CC---CCCHHHHHHHHhhhhhh
Q 003238 748 FNPSGGLRLKRDITEYGEFVRSFNAPSVDEKFELLGIMANVFIVA-PESLSTLFE---GT---PSIRKDAQRFIQLREDY 820 (837)
Q Consensus 748 vS~~Ggi~Li~Dln~Y~~~i~~~~~p~l~~~Fe~LreL~nLfiV~-pe~lk~l~~---g~---~~~~~~i~~fIq~R~D~ 820 (837)
||.-||++|=+|+.....++.+.....+.+.|.-|.+++-|.-+. ++.+.++.. |. .++++|+...+++|.||
T Consensus 174 fn~lGal~LdrDvr~li~~~~~~~~~~lRekF~RL~QI~~lLnle~~eev~d~~~~~~~~~~W~Ls~~E~r~il~lRvDf 253 (263)
T 3hr0_A 174 FNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVLALRIDF 253 (263)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHTTSCTTHHHHTHHHHHHHHHHTCSSGGGGGGTSGGGGTTCCCCSCHHHHHHHHTTBTTS
T ss_pred cCchhHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHcCCChHHHHHHhcccCCCccccCCHHHHHHHHHhhccC
Confidence 999999999999999999998767777999999999999998885 455555442 32 67899999999999999
Q ss_pred hhhhHHH
Q 003238 821 KSAKLAS 827 (837)
Q Consensus 821 ~~~k~~~ 827 (837)
+...+.+
T Consensus 254 ~~e~I~~ 260 (263)
T 3hr0_A 254 RSEDIKR 260 (263)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9987653
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.03 Score=62.53 Aligned_cols=132 Identities=11% Similarity=0.159 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-ccccC---ccchhHHHhhHHHHHHHHHhcCCCc-
Q 003238 700 ACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLNHWQ-KFTFN---PSGGLRLKRDITEYGEFVRSFNAPS- 774 (837)
Q Consensus 700 aC~~vv~~L~~~~~~l~~~ldg~Nle~Fl~EIG~rl~~~L~~HlK-kf~vS---~~Ggi~Li~Dln~Y~~~i~~~~~p~- 774 (837)
+...+|.-+...+.-.+..+...+.+.|..++-.++-...+..+. +.+++ ..||-++.+|+..-+++...+....
T Consensus 219 ~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~ 298 (399)
T 2fji_1 219 QAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNE 298 (399)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 788888888888888889999999999999999999999999987 77888 8999999999999999998887644
Q ss_pred -----hHHHHHHHHhhhceeeeCC-Cchhhhhc---CC--CCCHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 003238 775 -----VDEKFELLGIMANVFIVAP-ESLSTLFE---GT--PSIRKDAQRFIQLREDYKSAKLASRLSSL 832 (837)
Q Consensus 775 -----l~~~Fe~LreL~nLfiV~p-e~lk~l~~---g~--~~~~~~i~~fIq~R~D~~~~k~~~~~~~~ 832 (837)
+...|..|..|+. +..+| +.+...+. .. -...+.+..-+..|.|+.+.....+++.+
T Consensus 299 ~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~R~D~~~~~~k~ll~~~ 366 (399)
T 2fji_1 299 SKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQA 366 (399)
T ss_dssp THHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 8999999999999 77888 77776553 22 34688899999999999987666666543
No 3
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=93.07 E-value=2.5 Score=39.80 Aligned_cols=77 Identities=14% Similarity=0.272 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhccccCccchhH---HHhhHHHHHHHHHhcCC
Q 003238 696 RPTNACTRVVAYLSRVLEAAFTALEGLNKQAFLTELGNRLHKGLLNHWQKFTFNPSGGLR---LKRDITEYGEFVRSFNA 772 (837)
Q Consensus 696 ~~T~aC~~vv~~L~~~~~~l~~~ldg~Nle~Fl~EIG~rl~~~L~~HlKkf~vS~~Ggi~---Li~Dln~Y~~~i~~~~~ 772 (837)
.|+++-..+|.-+...++.+...|-...+...+..|=..|...|-++|++..+.+.||-. +++|+..|.+-++.+..
T Consensus 49 vpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~g 128 (141)
T 3n1e_A 49 VPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKG 128 (141)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcccCC
Confidence 378888999999999999999999999999999999999999999999999999999997 89999999998887644
No 4
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=86.44 E-value=3.2 Score=49.07 Aligned_cols=96 Identities=15% Similarity=0.140 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHh-hhccccCccchhHHHhhHHHHHHHHHhcCCC
Q 003238 696 RPTNACTRVVAYLSRVLEAAFTA-LEGLNKQAFLTELGNRLHKGLLNH-WQKFTFNPSGGLRLKRDITEYGEFVRSFNAP 773 (837)
Q Consensus 696 ~~T~aC~~vv~~L~~~~~~l~~~-ldg~Nle~Fl~EIG~rl~~~L~~H-lKkf~vS~~Ggi~Li~Dln~Y~~~i~~~~~p 773 (837)
.||.--...+..|..+...+..+ +...-.-.++..|...+-..|.++ +++.+||..||.++..|+++-.. .++.|
T Consensus 560 spSaEL~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~---v~~lp 636 (706)
T 3fhn_A 560 VPSAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSS---ILSLP 636 (706)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHT---TSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHH---HhcCC
Confidence 46665556778999999999999 688888999999999999999998 58999999999999999988544 44566
Q ss_pred c--hHHHHHHHHhhhceeeeCCC
Q 003238 774 S--VDEKFELLGIMANVFIVAPE 794 (837)
Q Consensus 774 ~--l~~~Fe~LreL~nLfiV~pe 794 (837)
. ....|..|+|.+.|+-.+-+
T Consensus 637 ~~~~~~~~~~L~E~l~LL~L~~d 659 (706)
T 3fhn_A 637 SHATNYKCMSLHELVKILKLKYD 659 (706)
T ss_dssp TTCCCHHHHHHHHHHHHHGGGGC
T ss_pred CcchhhHHHHHHHHHHHcCCCCC
Confidence 4 34689999999999887653
No 5
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=75.02 E-value=19 Score=38.71 Aligned_cols=102 Identities=12% Similarity=0.166 Sum_probs=69.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcccchHHHH----HHHHHHHHHHHHHH-hhhccccCccchhHHH
Q 003238 683 DYKSPDDGIAPDHRPTNACTRVVAYLSRVLEAAFTALEGLNKQAF----LTELGNRLHKGLLN-HWQKFTFNPSGGLRLK 757 (837)
Q Consensus 683 DF~P~~~~~~~~~~~T~aC~~vv~~L~~~~~~l~~~ldg~Nle~F----l~EIG~rl~~~L~~-HlKkf~vS~~Ggi~Li 757 (837)
|+.|.+. ...|+.-...++.||+..+. .-..|-++..+.. +..|+.+|..+|+. -.|++ |..|=..+-
T Consensus 207 DW~~~~~----~~~ps~yi~dli~fL~~~f~-sl~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~i--n~~av~~~~ 279 (325)
T 2a2f_X 207 DWLLVEP----PGIASAFITDMISYLKSTFD-SFAFKLPHIAQAACRRTFEHIAEKIYSIMYDEDVKQI--STGALTQIN 279 (325)
T ss_dssp TCC--------CCSCCHHHHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHHHHHHHHHHHHHTC--------CCTTHHHHH
T ss_pred CCCCCCC----CCCccHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc--CHHHHHHHH
Confidence 5556543 34689999999999999998 3445555544433 45677777777763 45554 444555588
Q ss_pred hhHHHHHHHHHhc-----CCCchHHHHHHHHhhhceeee
Q 003238 758 RDITEYGEFVRSF-----NAPSVDEKFELLGIMANVFIV 791 (837)
Q Consensus 758 ~Dln~Y~~~i~~~-----~~p~l~~~Fe~LreL~nLfiV 791 (837)
-||..-.+|+++- +.+.+...|.-||.+.||++-
T Consensus 280 ~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~Ll~~ 318 (325)
T 2a2f_X 280 LDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLIL 318 (325)
T ss_dssp HHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHh
Confidence 9999999999653 335688999999999999864
No 6
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=73.96 E-value=80 Score=32.02 Aligned_cols=165 Identities=17% Similarity=0.270 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhccCCchhHHHHHhhcCcchhhhccchhhhhhhccCCCC
Q 003238 256 VAVANLQDYCNELENRLLSRFDAASQRRELSTMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNADVRLVLGDQGSQ 335 (837)
Q Consensus 256 ~~~~~Ie~~~e~~E~~LL~eF~~ay~~~d~~~M~~~A~iL~~fngg~~~i~~fV~k~~~Fid~~~~~~~~~~~~~~~~~~ 335 (837)
....+|+.-...+...|.++.+. ..+....++....|..++.|..+.+.|.+.|.-.|....- .+ + ..
T Consensus 65 ~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r-----~l-~---~~ 132 (235)
T 2d2s_A 65 LISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLIL-----QI-G---SV 132 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-----CC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHH-----Hh-c---cc
Confidence 45566677777788888888855 5678899999999999999999999999987644432211 11 0 11
Q ss_pred CCCcchhhhH-HHHHHHHHHHHHhhHHHHhhcCCC-chHHHHHHHHHHHHHHH--HHHHHHHhcCCCCCCCCCCccCCHH
Q 003238 336 ASPSNVARGL-ASLYKEITDTVRKEAATITAVFPS-PNYVMSILVQRVLEQRV--TAILDKLLVKPSLVNLPPMEEGGLL 411 (837)
Q Consensus 336 ~~~~~~~~~l-~~l~~~i~~~~~~e~~iI~~VFp~-p~~Vm~~fvqRIf~q~I--~~~i~~lL~~a~~~s~~~~~~~~~~ 411 (837)
.+++.+...+ .-+|..|..++ ..-..+||+ ....+..||.=..++.= -..+...+-.. .+
T Consensus 133 gd~~~Yi~~Ls~i~Fs~I~~t~----~~f~~~F~~~~~~~~S~lV~Wa~~eve~f~~l~~rqv~~~----------~~-- 196 (235)
T 2d2s_A 133 DNPTNYLTQLAVIRFQTIKKTV----EDFQDIFKELGAKISSILVDWCSDEVDNHFKLIDKQLLND----------EM-- 196 (235)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH----HHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCcccccHHHHHHHHHHHHHHHHHHHHccCC----------cc--
Confidence 1123333222 23444444444 445569998 55677777766655431 12222222111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHhhhhhhh
Q 003238 412 LYLRMLAVAYEKTQELARDLRTVGCGDLDIEGVTECLFTSHKEE 455 (837)
Q Consensus 412 ~yLr~L~~ly~~t~~lv~~L~~~~~~~~~l~~~~~~lF~~yl~~ 455 (837)
.|- ..-..+..-++.|++.| .++.-++++++.|+++.
T Consensus 197 l~~----ecv~i~~~~~~~L~~vG---Ld~~~~L~~ll~~~~~~ 233 (235)
T 2d2s_A 197 LSP----GSIKSSRKQIDGLKAVG---LDFVYKLDEFIKKNSDK 233 (235)
T ss_dssp CCH----HHHHHHHHHHHGGGGGT---CCCHHHHHHHHHTTGGG
T ss_pred HHH----HHHHHHHHHHHHHHHcC---CChHHHHHHHHhhhHhh
Confidence 121 33344445566778876 45888999999998864
No 7
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=70.25 E-value=25 Score=40.61 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhccCCchhHHHHHhhcCcchhhhccchhhhhhhccCCCCCCCcchhhhHHHHHHHHHHHHHhhHHHHh
Q 003238 285 LSTMSECAKILSQFNRGTSAMQHYVATRPMFIDVEVMNADVRLVLGDQGSQASPSNVARGLASLYKEITDTVRKEAATIT 364 (837)
Q Consensus 285 ~~~M~~~A~iL~~fngg~~~i~~fV~k~~~Fid~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~e~~iI~ 364 (837)
...++.+|.-+..-..+..|++.|...+-=+++.+.-...................-..++......+..++..|..+++
T Consensus 120 l~~L~~Ia~~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~~~l~~~E~~L~~ 199 (564)
T 2b1e_A 120 LGALSWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEALLGFIANEKSLVD 199 (564)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888887777556679999998876555554210000000000000111112234567778888999999999999
Q ss_pred hcCCC----chHHHHHHHHHHH
Q 003238 365 AVFPS----PNYVMSILVQRVL 382 (837)
Q Consensus 365 ~VFp~----p~~Vm~~fvqRIf 382 (837)
.|||. ...++..+++...
T Consensus 200 ~vf~~~~~~~~~~f~~i~~~~l 221 (564)
T 2b1e_A 200 DLYSQYTESKPHVLSQILSPLI 221 (564)
T ss_dssp HHSCTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHH
Confidence 99997 2334444444333
No 8
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=57.59 E-value=27 Score=39.00 Aligned_cols=93 Identities=15% Similarity=0.207 Sum_probs=62.6
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhh
Q 003238 89 GLAAPLFPEVDALSSLFKDSCRELID-------LRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSR 161 (837)
Q Consensus 89 ~~~~~~~~~~~~li~tFe~~i~eL~~-------L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~ 161 (837)
|...|..|....+...+..++.++.. --++++++++++-.+. ..|.+-+.....|++++.++-++|.+++.+
T Consensus 341 ~~~~p~~p~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 341 GEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGL-RAVMEARNVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp SEECCCSTTHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh-HHHHHhhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 44567777666666666666655422 2233333333333222 233455567778999999999999999999
Q ss_pred hcccchhhhhhhhhhhhhhhh
Q 003238 162 ISSVGQTAAKIGDHLQSADAQ 182 (837)
Q Consensus 162 i~~V~~~~v~lGd~Le~~~~~ 182 (837)
-++...+++.|-+.||.-..+
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~ 440 (471)
T 3mq9_A 420 AATANHTVMALMASLDAEKAQ 440 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHHHHHH
Confidence 999999999998888865444
No 9
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=50.74 E-value=97 Score=26.26 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhccc
Q 003238 104 LFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSV 165 (837)
Q Consensus 104 tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (837)
.+|..+.-..+..-++..+++.|..+|++.--.=.+.--++..-.+.--+.|.+||.+++..
T Consensus 10 ~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~~ 71 (83)
T 2xdj_A 10 QLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSGG 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33443434445556677777788877766544433333344444445557788999999874
No 10
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=50.64 E-value=52 Score=24.75 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhh
Q 003238 118 QIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSR 161 (837)
Q Consensus 118 ~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~ 161 (837)
++++|+++||..+....-++.+=+.+....-..+-.....||.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777777777776666666666666666666666544
No 11
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=47.16 E-value=26 Score=23.51 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 104 LFKDSCRELIDLRKQIDDRLFNLKKELS 131 (837)
Q Consensus 104 tFe~~i~eL~~L~~~~~~k~~~Le~~v~ 131 (837)
..|..++.|+..-.++++|+.+||..|.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577778888888888888888887765
No 12
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=46.96 E-value=1.9e+02 Score=31.37 Aligned_cols=177 Identities=12% Similarity=0.142 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhh-hhcccchhhhhhhhhh
Q 003238 98 VDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDS-RISSVGQTAAKIGDHL 176 (837)
Q Consensus 98 ~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~-~i~~V~~~~v~lGd~L 176 (837)
+++....|..-++.|...-.++.... ++-+++.+..|++...+|+..+......|.-+.. .-...++....+|+.+
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~~~r~~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~ 262 (386)
T 4akv_A 186 VEDRVDTFKAFSKKMDDSVLQLSTVA---SELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTY 262 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence 34444444444444433333333333 3334444556777788888888777777754331 2334555666777777
Q ss_pred hhhhhhhh--cHHHHHHHHHHHHhhhCCCCCCcccCCCCCCchhHHHHHHHHHHHHHhhhhhhcccCcccCCCCcccccH
Q 003238 177 QSADAQRV--TASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAEKLRSFAEEDIGRQGIQDMGNANASRGL 254 (837)
Q Consensus 177 e~~~~~R~--ra~ea~~Li~~~~eF~~~~~~l~~ls~~f~dp~~~~eaA~ii~~L~~ia~~~~~~~~~~~~~~~~~~~~~ 254 (837)
+++...-. ...+...|...+.+|.. .+...-++|.. . ...+++.....+ .... + + ..
T Consensus 263 e~i~~l~~~Qa~~d~~~L~E~L~~Y~~---ll~s~Kdll~~---R---~~aL~k~~ea~k-l~~~-~--K------~~-- 321 (386)
T 4akv_A 263 EAIGEMFAEQPKNDLFQMLDTLSLYQG---LLSNFPDIIHL---Q---KGAFAKVKESQR-MSDE-G--R------MV-- 321 (386)
T ss_dssp HHHHHHHHHGGGTTHHHHHHHHHHHHH---HHHHHHHHHHH---H---HHHHHHHHHHHH-HHHT-T--S------SC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---H---HHHHHHHHHHHH-HHHh-C--C------cc--
Confidence 77653322 22333444444444431 11111112211 1 011111111110 0000 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccHH-HHHHHHHHHHhc
Q 003238 255 EVAVANLQDYCNELENRLLSRFDAASQR--RELS-TMSECAKILSQF 298 (837)
Q Consensus 255 ~~~~~~Ie~~~e~~E~~LL~eF~~ay~~--~d~~-~M~~~A~iL~~f 298 (837)
....+.+++-++.+=..+..|.+....+ .|+. .|.+++..-..|
T Consensus 322 ~~~~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~ 368 (386)
T 4akv_A 322 QDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILF 368 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345566777788888888888876554 4553 677777765444
No 13
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=45.43 E-value=99 Score=28.50 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=40.3
Q ss_pred HHHHHHHHHHH--------HH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHh
Q 003238 103 SLFKDSCRELI--------DL-------------RKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFAR 157 (837)
Q Consensus 103 ~tFe~~i~eL~--------~L-------------~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~ 157 (837)
..|...+++|. +. .++..+++.+|+.+.+..+.++.+.+.+-..-++.+-+.+..
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777772 22 356678888899888888888888888777777666555544
No 14
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=43.24 E-value=1.8e+02 Score=26.08 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHhhHHhhh
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKT---LAELEKGVDGLFDSFARLD 159 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~---l~~L~~~~~~~~~~f~~Ld 159 (837)
..-+.+.+.-+..|..-++....++.+||+.-...|+.++.. |..++.+++.++..=-=|+
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE 97 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLE 97 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888888888888888888887777777554 4444455555554433333
No 15
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=43.16 E-value=1.4e+02 Score=34.36 Aligned_cols=44 Identities=11% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003238 347 SLYKEITDTVRKEAATITAVFPSPNYVMSILVQRVLEQRVTAILDKLLVK 396 (837)
Q Consensus 347 ~l~~~i~~~~~~e~~iI~~VFp~p~~Vm~~fvqRIf~q~I~~~i~~lL~~ 396 (837)
..+.-+..++..|.++++.|||... -..+|....++-+..++..
T Consensus 202 ~~~~~~~~l~~~Er~L~~~vf~~~~------~~~~F~~i~~~~~~~ll~f 245 (571)
T 2pft_A 202 HCVSAFVKLAQSEYRLLMEIIPEHH------QKKTFDSLIQDALDGLMLE 245 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccc------HHHHHHHHHHHHHHHHHHH
Confidence 3344455679999999999998732 3467777777777766653
No 16
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=41.33 E-value=49 Score=29.64 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHhhHHhhhhhhcccchhhhhhhhhhhhhh
Q 003238 106 KDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVD---GLFDSFARLDSRISSVGQTAAKIGDHLQSAD 180 (837)
Q Consensus 106 e~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~---~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~ 180 (837)
|..++.|..+.+.++.-..+|+ .+.+.+..+++++- -..+.+..||.||..++--..++-++|.++.
T Consensus 7 E~~lK~L~~veksv~~~~kkl~--------~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~~MK~LE~lDsl~ 76 (114)
T 1hx1_B 7 EVELKKLKHLEKSVEKIADQLE--------ELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLI 76 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455666666655544444333 23334444444431 1224556666666666655566655555444
No 17
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=41.29 E-value=96 Score=23.47 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 106 KDSCRELIDLRKQIDDRLFNLKKELSVQDSK 136 (837)
Q Consensus 106 e~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~ 136 (837)
|.-|..|+....++-.|++.|+..|...|.+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQE 33 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQE 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 4567889999999999999999999988844
No 18
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=36.80 E-value=1.1e+02 Score=28.95 Aligned_cols=47 Identities=13% Similarity=0.086 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhh
Q 003238 116 RKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRI 162 (837)
Q Consensus 116 ~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i 162 (837)
.++..+++.+|+.+.+..+.+..+.+.+-..-++.+-+.+..+-+.+
T Consensus 87 eeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~ 133 (151)
T 1yke_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGI 133 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999998888888877777666655444
No 19
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=34.80 E-value=52 Score=25.46 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 105 FKDSCRELIDLRKQIDDRLFNLKKELSVQDSK 136 (837)
Q Consensus 105 Fe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~ 136 (837)
=|.-+..|++...++-.|++.||.+|.+.|.+
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQE 40 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQE 40 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999887755
No 20
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=33.77 E-value=83 Score=26.07 Aligned_cols=46 Identities=11% Similarity=0.310 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhc
Q 003238 118 QIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (837)
Q Consensus 118 ~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (837)
+++.|+++||..+....-++.+-+.+....-..+-....+||.++.
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~ 49 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLK 49 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666655555555555555555555555555554443
No 21
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=30.80 E-value=4.3e+02 Score=26.66 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhh
Q 003238 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSA 179 (837)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~ 179 (837)
+=||..|..+..+..-++.+..++.+|+.. .-.+.+|..|+..+..+-..--.- =-+|.++
T Consensus 97 K~IR~~E~svqp~R~~R~~l~~~I~kLk~k-----~P~s~kl~~LeqELvraEae~lva--------------EAqL~n~ 157 (234)
T 3plt_A 97 KSIRNIEASVQPSRDRKEKITDEIAHLKYK-----DPQSTKIPVLEQELVRAEAESLVA--------------EAQLSNI 157 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTCTHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcc-----CCCCchHHHHHHHHHHHHHHhhHH--------------HHHHHHh
Confidence 446777777777777777777777776642 112344555554443332211111 1355666
Q ss_pred hhhhhcHHHHHHH-HHHHHhhh
Q 003238 180 DAQRVTASQTIDL-IKYLMEFN 200 (837)
Q Consensus 180 ~~~R~ra~ea~~L-i~~~~eF~ 200 (837)
. |..-.+|+.+ +..+.|+.
T Consensus 158 k--R~~lKEa~~~~f~Al~E~a 177 (234)
T 3plt_A 158 T--REKLKAAYSYMFDSLRELS 177 (234)
T ss_dssp H--HHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHH
Confidence 5 6666666665 33455554
No 22
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=30.51 E-value=2.3e+02 Score=23.46 Aligned_cols=67 Identities=10% Similarity=0.182 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhccc
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSV 165 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (837)
+.+-..|-.++.....--.-+..-..+...-|...-..-.+-+.+|..++..+.++++++-.|+..+
T Consensus 8 k~iA~sFN~A~~~i~~g~~tts~AL~kiQdVVN~q~~aL~~L~~qL~~NFgAISssi~dIy~RLd~l 74 (77)
T 2bez_C 8 KQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKV 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 5566788888888888777888888888888888888888888899999999988888887776543
No 23
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=29.42 E-value=89 Score=27.48 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhc
Q 003238 107 DSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRIS 163 (837)
Q Consensus 107 ~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~ 163 (837)
..+.+|..-|+..+.|+.+|-..+ ...+.-..+.++.+.++.++.+|+.+...-.
T Consensus 43 el~~eL~~~c~~~qp~i~~li~~~--~dee~l~~lL~~ND~L~~vl~ry~~~~~~~~ 97 (103)
T 1wrd_A 43 ELLQELNRTCRAMQQRVLELIPQI--ANEQLTEELLIVNDNLNNVFLRHERFERFRT 97 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 577889999999999999998865 3344678899999999999999999865443
No 24
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=29.33 E-value=3.9e+02 Score=25.63 Aligned_cols=94 Identities=9% Similarity=0.179 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhH-Hhhhhhhcccchhhhhhhhhh
Q 003238 99 DALSSLFKDSCRELI-DLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSF-ARLDSRISSVGQTAAKIGDHL 176 (837)
Q Consensus 99 ~~li~tFe~~i~eL~-~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f-~~Ld~~i~~V~~~~v~lGd~L 176 (837)
..+...+.....+|. .|.++++.=..+|+--+.+......+++.++..++.-..+.+ .++...+...-.+..|+++.|
T Consensus 70 ~e~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~l 149 (185)
T 3r2p_A 70 QEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEM 149 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 556656655555543 244455555555555555666667788888888888887766 355556666777777888887
Q ss_pred hhhhhhhhcHHHHHHHHH
Q 003238 177 QSADAQRVTASQTIDLIK 194 (837)
Q Consensus 177 e~~~~~R~ra~ea~~Li~ 194 (837)
..-- +.+..+....+.
T Consensus 150 r~~l--~~~~e~lk~~l~ 165 (185)
T 3r2p_A 150 RDRA--RAHVDALRTHLA 165 (185)
T ss_dssp HHHH--HHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHhh
Confidence 6433 444444443333
No 25
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=27.91 E-value=2.2e+02 Score=29.73 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHhhHHhhhhhhcccchhhhhhhhhh
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVD--GLFDSFARLDSRISSVGQTAAKIGDHL 176 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~--~~~~~f~~Ld~~i~~V~~~~v~lGd~L 176 (837)
.|+...|++-..+|...+ .+.+++-+.+|.....=.+-+-.|++... ..-.-.++.++++..+......|-..|
T Consensus 33 ~~v~~~F~~~~~eLd~~~----d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~~~~~La~~l 108 (290)
T 3qb5_K 33 SPVMLAFKSFQQELDARH----DKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQVAQEL 108 (290)
T ss_dssp SHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777887777776655 33455555556555444444545555421 123334455555555544444455444
Q ss_pred hhhh
Q 003238 177 QSAD 180 (837)
Q Consensus 177 e~~~ 180 (837)
...+
T Consensus 109 ~~~~ 112 (290)
T 3qb5_K 109 SGED 112 (290)
T ss_dssp SSSC
T ss_pred ccCC
Confidence 4433
No 26
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=26.15 E-value=67 Score=25.74 Aligned_cols=45 Identities=11% Similarity=0.196 Sum_probs=34.3
Q ss_pred hhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhhhhhhcHHHHH
Q 003238 146 KGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRVTASQTI 190 (837)
Q Consensus 146 ~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~~~R~ra~ea~ 190 (837)
+.++.+...-.+||..+..|.+++-.+|.+|+...+....-.+|.
T Consensus 6 EEF~~L~rRVlqLE~sl~gI~SqIDaV~~KL~~~Er~k~~~re~m 50 (64)
T 3hrn_A 6 EEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKRREVL 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 455666677778888888988899999999998886555555554
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.11 E-value=2.1e+02 Score=32.48 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhhHHHhhHHhhhhhhccc
Q 003238 138 RKTLAELEKGVDGLFDSFARLDSRISSV 165 (837)
Q Consensus 138 ~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (837)
...++++.+..++-...++.|+.++..+
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l 549 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIAL 549 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHH
Confidence 3334444444444444555444444444
No 28
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=26.06 E-value=1.8e+02 Score=31.11 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcccc
Q 003238 643 EEMATAMSSAEAAAYKGLQQCIETVMAEVERLLSAEQKPSDYKSPDDGIAPDHRPTNACTRVVAYLSRVLEAAFTALEGL 722 (837)
Q Consensus 643 ~~~~~~~~~lE~~v~~gL~~~Id~l~~~v~~iL~t~Qkk~DF~P~~~~~~~~~~~T~aC~~vv~~L~~~~~~l~~~ldg~ 722 (837)
.+....+..+-.-++.-++-.|...+.++..+|. ..+.....|+.........+..+-.-..+||......+...+...
T Consensus 157 ~~l~~vl~~l~~~~~~~~~~~i~~~v~~m~~~l~-~i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~ 235 (341)
T 3swh_A 157 VKLNNVLDELSHVFATSFQPHIEECVRQMGDILS-QVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKT 235 (341)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555455555666667777777777765 333332222211000001123445567789999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 003238 723 NKQAFLTELGNRLHKGLLNHW 743 (837)
Q Consensus 723 Nle~Fl~EIG~rl~~~L~~Hl 743 (837)
|+..++.+|=......+.+-+
T Consensus 236 ~f~rvL~~lW~~~l~~l~~~i 256 (341)
T 3swh_A 236 VLKRVLKELWKLVMNTMERTI 256 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888777754
No 29
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=24.71 E-value=4.1e+02 Score=24.70 Aligned_cols=68 Identities=10% Similarity=0.176 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccc
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVG 166 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~ 166 (837)
+.+-..|-.++.....--.-+..-..+...-|......-.+-+.+|..++..+.++++++-.|+..+.
T Consensus 21 k~iA~sFN~A~~~~~~g~~tts~AL~kiQ~VVN~q~~aL~~l~~qL~~nFgAISssi~dIy~rLd~le 88 (149)
T 1wyy_A 21 KQIANQFNKAISQIQESLTTTSTALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 88 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45667888898888888788888888888889988888888899999999999999888888877653
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.51 E-value=3.1e+02 Score=31.08 Aligned_cols=8 Identities=13% Similarity=0.239 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 003238 223 ASIAEKLR 230 (837)
Q Consensus 223 A~ii~~L~ 230 (837)
+.+-++|.
T Consensus 568 ~~~~~~~~ 575 (597)
T 3oja_B 568 SLKRQKVK 575 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.43 E-value=1.7e+02 Score=33.07 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003238 99 DALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVD 149 (837)
Q Consensus 99 ~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~ 149 (837)
=.|..+....-++|...=+++.++++++++.-+..+..+......|..++.
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~ 99 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFS 99 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHH
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555666666655555555555555555554443
No 32
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=23.42 E-value=50 Score=24.70 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=28.7
Q ss_pred hhhhHHHhhHHhhhhhhcccchhhhhhhhhhhhhhh
Q 003238 146 KGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADA 181 (837)
Q Consensus 146 ~~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~~ 181 (837)
+.++.+...-.+||..+..|.+++-.+|.+|+...+
T Consensus 7 eeF~~L~rRVlqlE~~l~gI~S~idav~~Kl~~~Er 42 (45)
T 4gif_A 7 EEFYMLTRRVLQLETVLEGVVSQIDAVGSKLKMLER 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666677778888888888899999999987764
No 33
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=23.20 E-value=3.9e+02 Score=26.15 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHhhHHhhhhhhcccchhhhhhhhhhhhh
Q 003238 117 KQIDDRLFNLKKELSVQDSKHRKTLAELEK--GVDGLFDSFARLDSRISSVGQTAAKIGDHLQSA 179 (837)
Q Consensus 117 ~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~--~~~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~ 179 (837)
.+.-.++.++|.++...+.+..++|-+... ... ..=.+.++=+.+..++-.+-.+|+.++.+
T Consensus 160 ~~~~~~i~~lE~~~D~l~~~~~~~Lf~~~~~~d~~-~~i~~~ei~~~lE~i~D~~e~vA~~l~~i 223 (227)
T 2olt_A 160 AKMINELDIIEEDTDDLQIQLRRQLFALESELNPV-DVMFLYKTIEWVGGLADLAERVGSRLELM 223 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888888888888888887766544 221 22244455555555555666666666554
No 34
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=22.64 E-value=5.1e+02 Score=24.77 Aligned_cols=84 Identities=14% Similarity=0.213 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhHHHhhHHhhhhhhcccc
Q 003238 97 EVDALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKH----------RKTLAELEKGVDGLFDSFARLDSRISSVG 166 (837)
Q Consensus 97 ~~~~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h----------~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~ 166 (837)
++..-+..+|...+||..-....+.....|++++......- .+.+.+|+.++..+....+.+=.+.+.|-
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~ 117 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777888877777777777777777775433222 22234555555555555555555555554
Q ss_pred hhhhhhhhhhhhhh
Q 003238 167 QTAAKIGDHLQSAD 180 (837)
Q Consensus 167 ~~~v~lGd~Le~~~ 180 (837)
..--++-|++....
T Consensus 118 ~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 118 GERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555444
No 35
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=21.63 E-value=1.8e+02 Score=23.97 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHh----hhhhhcccchhhhhhhhhhhhhhhhhhcHHH
Q 003238 126 LKKELSVQDSKHRKTLAELEKGVDGLFDSFAR----LDSRISSVGQTAAKIGDHLQSADAQRVTASQ 188 (837)
Q Consensus 126 Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~----Ld~~i~~V~~~~v~lGd~Le~~~~~R~ra~e 188 (837)
...-|...-..-.+-+.+|..++..+.+++++ ||.|++....-+.. +--.+..+|.=|.+
T Consensus 5 iQdVVN~q~~aL~~L~~qL~~NFgAISSsi~dIy~rLdGRlaaLnafv~~---~~~ev~~~r~lA~~ 68 (77)
T 1zva_A 5 LQDVVNQNAQALNTLVKQLSSNFGAISSVLNDISGGRGGDISGINASVVN---IQKEIDRLNEVAKN 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCTTHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcchHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34455555566666677788888877776554 55555554433433 33346655655544
No 36
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=21.45 E-value=2.4e+02 Score=26.01 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHhhHHhhhhhhcccchhhhhhhhhhhhhh
Q 003238 106 KDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGV---DGLFDSFARLDSRISSVGQTAAKIGDHLQSAD 180 (837)
Q Consensus 106 e~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~---~~~~~~f~~Ld~~i~~V~~~~v~lGd~Le~~~ 180 (837)
|..++.|+.+.+.+++-..+|. .+...+..+++++ .-....+..||.++..++--..++-++|.++.
T Consensus 17 e~~lKkL~dveksv~~~~k~l~--------~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ 86 (135)
T 1i6z_A 17 EVELKKLKDLEVSAEKIANHLQ--------ELNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILEEIDTMV 86 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4456666666666554222221 2223344444443 11224556677666666555555555555443
No 37
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=20.97 E-value=4.3e+02 Score=23.24 Aligned_cols=60 Identities=3% Similarity=0.181 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhhHHHhhHHhhh
Q 003238 100 ALSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQD---------SKHRKTLAELEKGVDGLFDSFARLD 159 (837)
Q Consensus 100 ~li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e---------~~h~~~l~~L~~~~~~~~~~f~~Ld 159 (837)
.+-+..+....+.+.+...+..++..|+.++...+ +--...+..|.+++.+++..|+..+
T Consensus 47 ~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q 115 (127)
T 1ez3_A 47 KTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQ 115 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777665433 1123334567777777777777643
No 38
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=20.66 E-value=6.1e+02 Score=25.58 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=8.3
Q ss_pred hhhhhhhhhhhhhhhc
Q 003238 170 AKIGDHLQSADAQRVT 185 (837)
Q Consensus 170 v~lGd~Le~~~~~R~r 185 (837)
..+-+.|+.++..|-.
T Consensus 215 ~~~~~~lQ~le~~r~~ 230 (305)
T 2efl_A 215 PNIFQKIQEMEERRIV 230 (305)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455556666644433
No 39
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.59 E-value=1.7e+02 Score=25.51 Aligned_cols=68 Identities=7% Similarity=0.124 Sum_probs=51.1
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHhhhhhhcccc
Q 003238 97 EVDALS--SLFKDSCRELIDLRKQIDDRLFNLKKELSVQDSKHRKTLAELEKGVDGLFDSFARLDSRISSVG 166 (837)
Q Consensus 97 ~~~~li--~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~~h~~~l~~L~~~~~~~~~~f~~Ld~~i~~V~ 166 (837)
-|.|+- ..|++--.+...+..++..++.++....... +-.+.+.+.+..++++-+--+++|--++++.
T Consensus 7 ~~~~~~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e--~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 7 MAASAASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTE--EKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345555 8999999999999999999999874332212 2234577888888888888889888887763
No 40
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=20.58 E-value=4.2e+02 Score=22.93 Aligned_cols=76 Identities=13% Similarity=0.242 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH-HHHHHHHHhhhhHHHhhHHhhhhhhccc
Q 003238 101 LSSLFKDSCRELIDLRKQIDDRLFNLKKELSVQDS--------------KH-RKTLAELEKGVDGLFDSFARLDSRISSV 165 (837)
Q Consensus 101 li~tFe~~i~eL~~L~~~~~~k~~~Le~~v~~~e~--------------~h-~~~l~~L~~~~~~~~~~f~~Ld~~i~~V 165 (837)
-+......+.+|.....++..++..++..+...+. .| ...+......+..+...+..|..++...
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l 90 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSEL 90 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666665543 11 2234455555555555555555555544
Q ss_pred chhhhhhhhhh
Q 003238 166 GQTAAKIGDHL 176 (837)
Q Consensus 166 ~~~~v~lGd~L 176 (837)
-.....+..++
T Consensus 91 ~~~~~~l~~~~ 101 (112)
T 1l8d_A 91 ERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 41
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=20.31 E-value=2.2e+02 Score=23.40 Aligned_cols=27 Identities=4% Similarity=0.150 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003238 106 KDSCRELIDLRKQIDDRLFNLKKELSV 132 (837)
Q Consensus 106 e~~i~eL~~L~~~~~~k~~~Le~~v~~ 132 (837)
+.+-.++.....+++..+..|...+..
T Consensus 15 ~~~A~~~~~~~~~i~~~l~~L~~~~~~ 41 (93)
T 4ioe_A 15 ERIAGNFKNAAGEAQSQINRLEGDINS 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555544444
No 42
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=20.07 E-value=5.4e+02 Score=25.65 Aligned_cols=20 Identities=5% Similarity=0.150 Sum_probs=11.4
Q ss_pred hhhhhhhhhhhhhhhhhcHH
Q 003238 168 TAAKIGDHLQSADAQRVTAS 187 (837)
Q Consensus 168 ~~v~lGd~Le~~~~~R~ra~ 187 (837)
....+-+.|+.++..|-.+.
T Consensus 196 ~~~~~~~~lQ~le~~R~~~l 215 (276)
T 2v0o_A 196 KMTETAQKFQDIEETHLIHI 215 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456667777775554443
Done!