BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003242
(837 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 735 HAIAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIFKPPAKEKASVEEA------ 788
H++ F GR VY+ +D T+SKS+ V + +V A
Sbjct: 233 HSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIF 292
Query: 789 EQVLPPSSTRTPTT--------HQKRRR 808
LPPS T TT H+KR R
Sbjct: 293 TASLPPSVVATATTSIRKLMTAHEKRER 320
>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 682 QLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFN 741
+ + + + +AH++K +F + E+ G + MN C+ WK GL + +A FN
Sbjct: 136 RFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQWKEQGLNSENFVA-FN 194
Query: 742 STGR 745
T R
Sbjct: 195 LTER 198
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 735 HAIAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIFKPPAKEKASVEEA------ 788
H++ F GR VY+ +D T+SKS+ V + +V A
Sbjct: 234 HSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIF 293
Query: 789 EQVLPPSSTRTPTT--------HQKRRR 808
LPPS T TT H+KR R
Sbjct: 294 TASLPPSVVATATTSIRKLMTAHEKRER 321
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 735 HAIAVFNSTGRNVYDYCSSYFTVDSYRSTYSKSINLVEAIFKPPAKEKASVEEA------ 788
H++ F GR VY+ +D T+SKS+ V + +V A
Sbjct: 233 HSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIF 292
Query: 789 EQVLPPSSTRTPTT--------HQKRRR 808
LPPS T TT H+KR R
Sbjct: 293 TASLPPSVVATATTSIRKLMTAHEKRER 320
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
With Atp,Mg, Ca And Pyruvate.
pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
Oxaloacetate
Length = 540
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 682 QLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFN 741
+ + + + +AH++K +F + E+ G + MN C+ WK GL + +A FN
Sbjct: 136 RFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQWKEQGLNSENFVA-FN 194
Query: 742 STGR 745
T R
Sbjct: 195 LTER 198
>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
Carboxykinase Mutant Lys213ser Complexed With
Atp-mg2+-mn2+
Length = 540
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 682 QLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFN 741
+ + + + +AH++K +F + E+ G + MN C+ WK GL + +A FN
Sbjct: 136 RFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQWKEQGLNSENFVA-FN 194
Query: 742 STGR 745
T R
Sbjct: 195 LTER 198
>pdb|3HAL|A Chain A, Crystal Structure Of Rabbit Acidic Fibroblast Growth
Factor
pdb|3HAL|B Chain B, Crystal Structure Of Rabbit Acidic Fibroblast Growth
Factor
Length = 146
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 305 SRASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCGESSKTAHPTKNWLVSIIKD 362
S +G A Y S PSE ++++ E H +SK H KNW V + K+
Sbjct: 64 STETGQYLAMDTDGLLYGSQTPSEECLFLERLEENHYNTYTSK-KHAEKNWFVGLKKN 120
>pdb|1OEN|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 540
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 682 QLVKDASRRAHYLKVLFSSDTLFEVQGDSTHVVDMNKRDCSCLVWKATGLPCHHAIAVFN 741
+ + + + +AH++K +F + E+ G + MN C+ WK GL + +A FN
Sbjct: 136 RFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQWKEQGLNSENFVA-FN 194
Query: 742 STGR 745
T R
Sbjct: 195 LTER 198
>pdb|3FJI|A Chain A, Crystal Structure Of K12vC83IC117V MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
pdb|3FJI|B Chain B, Crystal Structure Of K12vC83IC117V MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
pdb|3FJI|C Chain C, Crystal Structure Of K12vC83IC117V MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
pdb|3FJI|D Chain D, Crystal Structure Of K12vC83IC117V MUTANT OF HUMAN ACIDIC
Fibroblast Growth Factor
Length = 146
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 305 SRASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCGESSKTAHPTKNWLVSIIKD 362
S +G A Y S P+E + ++++ E H SK H KNW V + K+
Sbjct: 64 STETGQYLAMDTDGLLYGSQTPNEEILFLERLEENHYNTYISK-KHAEKNWFVGLKKN 120
>pdb|3FJJ|A Chain A, Crystal Structure Of C83v Mutant Of Human Acidic
Fibroblast Growth Factor
pdb|3FJJ|B Chain B, Crystal Structure Of C83v Mutant Of Human Acidic
Fibroblast Growth Factor
Length = 146
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 305 SRASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCGESSKTAHPTKNWLVSIIKD 362
S +G A Y S P+E V ++++ E H SK H KNW V + K+
Sbjct: 64 STETGQYLAMDTDGLLYGSQTPNEEVLFLERLEENHYNTYISK-KHAEKNWFVGLKKN 120
>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
Length = 977
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 498 DTENDDSWNWFLEELRSAVSSSRSITFVSDKQKG 531
D + SW+W L+ + V+ +R TFV+ KG
Sbjct: 81 DQWEEKSWDWMLDTIAERVAKTREATFVTKNAKG 114
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 496 IVDTENDDSWNWFLEELRSAVSSSR--SITFVSDKQKGLMESVLKIFENAHHGYSIYHLL 553
++D + D S+N L EL SAV + I ++++++G++ +F H YS H L
Sbjct: 487 VIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLF--YEHRYSHTHQL 544
Query: 554 D-NFMK 558
+ +F+K
Sbjct: 545 NPDFIK 550
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 496 IVDTENDDSWNWFLEELRSAVSSSR--SITFVSDKQKGLMESVLKIFENAHHGYSIYHLL 553
++D + D S+N L EL SAV + I ++++++G++ +F H YS H L
Sbjct: 534 VIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLF--YEHRYSHTHQL 591
Query: 554 D-NFMK 558
+ +F+K
Sbjct: 592 NPDFIK 597
>pdb|3C4R|A Chain A, Crystal Structure Of An Uncharacterized Protein Encoded By
Cryptic Prophage
pdb|3C4R|B Chain B, Crystal Structure Of An Uncharacterized Protein Encoded By
Cryptic Prophage
pdb|3C4R|C Chain C, Crystal Structure Of An Uncharacterized Protein Encoded By
Cryptic Prophage
pdb|3C4R|D Chain D, Crystal Structure Of An Uncharacterized Protein Encoded By
Cryptic Prophage
Length = 151
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 8/56 (14%)
Query: 638 WIEEVWELP-LIQKLERLLCKMTE-----MINNRRMNSSGWFTKLIPSREQLVKDA 687
W+E+ + P ++K++ LL + + ++ R +SS +F +L+ +RE+LV+DA
Sbjct: 63 WVEK--DTPDAVEKIQALLPAIEKSXPPLLVARXRSHSSAYFRELVETRERLVRDA 116
>pdb|2C71|A Chain A, The Structure Of A Family 4 Acetyl Xylan Esterase From
Clostridium Thermocellum In Complex With A Magnesium
Ion.
pdb|2C79|A Chain A, The Structure Of A Family 4 Acetyl Xylan Esterase From
Clostridium Thermocellum In Complex With A Colbalt Ion
Length = 216
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 57 YKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSGFDREAFAIETGR 116
Y + K+F P N +T T+ N+ DL G +TA+ ++ T+ R A I R
Sbjct: 93 YAGTTPKFFRPPNLETSPTLFNNVDL-----VFVGGLTANDWIPSTTAEQRAAAVINGVR 147
Query: 117 ASGIKLAETVSP 128
I L V P
Sbjct: 148 DGTIILLHDVQP 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,378,972
Number of Sequences: 62578
Number of extensions: 965408
Number of successful extensions: 3017
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3011
Number of HSP's gapped (non-prelim): 20
length of query: 837
length of database: 14,973,337
effective HSP length: 107
effective length of query: 730
effective length of database: 8,277,491
effective search space: 6042568430
effective search space used: 6042568430
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)