Query 003242
Match_columns 837
No_of_seqs 405 out of 1812
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 18:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu1_A Mitogen-activated prote 99.0 6.9E-10 2.3E-14 94.7 9.1 70 27-102 15-87 (103)
2 1vd2_A Protein kinase C, IOTA 98.1 2.2E-05 7.5E-10 67.4 10.3 72 28-101 14-88 (89)
3 2jrh_A Mitogen-activated prote 97.7 0.00029 9.9E-09 58.7 9.8 72 24-102 9-83 (94)
4 1oey_A P67-PHOX, neutrophil cy 97.6 0.00015 5E-09 61.3 7.8 71 23-98 9-79 (83)
5 2c60_A Human mitogen-activated 97.6 0.00031 1.1E-08 60.0 9.8 72 23-101 35-109 (111)
6 2npt_B Mitogen-activated prote 97.6 0.00029 9.9E-09 59.5 9.4 71 24-101 25-98 (100)
7 2kkc_A Sequestosome-1; P62, PB 97.4 0.0006 2.1E-08 60.0 9.1 71 27-100 18-100 (102)
8 2ktr_A Sequestosome-1; autopha 97.4 0.0012 4E-08 59.4 10.7 71 27-100 33-115 (117)
9 1wmh_B Partitioning defective- 97.4 0.00068 2.3E-08 57.3 8.5 71 26-100 12-84 (86)
10 1q1o_A Cell division control p 97.3 0.00034 1.2E-08 60.8 6.3 58 29-88 22-84 (98)
11 1pqs_A Cell division control p 96.9 0.0016 5.6E-08 54.2 6.0 56 30-87 2-62 (77)
12 1ip9_A BEM1 protein; ubiquitin 94.6 0.18 6E-06 42.3 8.8 62 24-91 17-79 (85)
13 2bkf_A Zinc-finger protein NBR 94.2 0.16 5.6E-06 42.7 7.9 56 28-87 14-71 (87)
14 1wj6_A KIAA0049 protein, RSGI 92.5 0.26 8.8E-06 42.6 6.5 73 24-101 19-94 (101)
15 1nc8_A Nucleocapsid protein; H 91.5 0.073 2.5E-06 35.4 1.6 21 816-836 5-25 (29)
16 1oey_J P40-PHOX, neutrophil cy 89.8 1.3 4.5E-05 38.2 8.1 60 28-91 17-80 (107)
17 3hot_A Transposable element ma 89.1 6.8 0.00023 41.6 15.8 56 472-530 186-252 (345)
18 1a6b_B Momulv, zinc finger pro 88.3 0.22 7.5E-06 35.8 2.0 20 817-836 10-29 (40)
19 1dsq_A Nucleic acid binding pr 87.8 0.24 8.1E-06 32.0 1.8 19 818-836 3-21 (26)
20 2ayd_A WRKY transcription fact 87.4 1.1 3.7E-05 36.9 5.9 38 306-343 35-72 (76)
21 1wj2_A Probable WRKY transcrip 85.6 1.4 4.9E-05 36.4 5.7 38 306-343 38-75 (78)
22 1u6p_A GAG polyprotein; MLV, A 85.2 0.52 1.8E-05 36.5 2.7 20 817-836 23-42 (56)
23 2ec7_A GAG polyprotein (PR55GA 83.8 0.51 1.7E-05 35.5 2.1 20 817-836 27-46 (49)
24 3a9j_A Ubiquitin; protein comp 78.9 3.3 0.00011 33.3 5.7 41 24-64 5-45 (76)
25 2a51_A Nucleocapsid protein; s 78.0 0.82 2.8E-05 32.5 1.4 18 818-835 22-39 (39)
26 2bwf_A Ubiquitin-like protein 76.2 4.8 0.00017 32.5 6.0 40 25-65 10-49 (77)
27 2a51_A Nucleocapsid protein; s 75.9 1.2 4E-05 31.7 1.8 18 819-836 2-19 (39)
28 1ndd_A NEDD8, protein (ubiquit 75.3 4.3 0.00015 32.6 5.4 41 25-65 6-46 (76)
29 3phx_B Ubiquitin-like protein 74.2 4.9 0.00017 32.8 5.5 41 24-64 9-49 (79)
30 1wjn_A Tubulin-folding protein 73.7 4.5 0.00015 34.8 5.3 53 28-80 21-73 (97)
31 2al3_A TUG long isoform; TUG U 73.5 3.4 0.00012 35.1 4.3 67 24-101 14-80 (90)
32 2bl6_A Nucleocapsid protein P1 72.4 1.5 5.2E-05 30.6 1.6 15 820-834 3-17 (37)
33 2dzi_A Ubiquitin-like protein 72.3 6 0.00021 32.2 5.7 39 26-64 14-52 (81)
34 3mtn_B UBA80, ubcep1, ubiquiti 71.6 5.7 0.00019 32.7 5.4 40 25-64 9-48 (85)
35 1yx5_B Ubiquitin; proteasome, 70.9 6.3 0.00021 33.8 5.7 41 24-64 5-45 (98)
36 4dwf_A HLA-B-associated transc 70.8 6.1 0.00021 33.2 5.5 41 24-64 10-50 (90)
37 1a1t_A Nucleocapsid protein; s 70.7 1.5 5E-05 33.7 1.3 21 816-836 32-52 (55)
38 3n3k_B Ubiquitin; hydrolase, p 70.5 5.9 0.0002 32.7 5.2 41 25-65 9-49 (85)
39 2bl6_A Nucleocapsid protein P1 70.0 1.8 6.1E-05 30.3 1.5 18 818-835 20-37 (37)
40 1wh3_A 59 kDa 2'-5'-oligoadeny 69.7 7.5 0.00026 32.3 5.8 41 25-65 13-53 (87)
41 2kk8_A Uncharacterized protein 69.3 8.1 0.00028 32.2 5.8 42 24-65 15-56 (84)
42 1sif_A Ubiquitin; hydrophobic 69.0 7 0.00024 32.8 5.4 40 25-64 15-54 (88)
43 2ysa_A Retinoblastoma-binding 68.7 2 6.8E-05 33.1 1.6 20 816-835 6-25 (55)
44 4eew_A Large proline-rich prot 67.9 7.8 0.00027 32.3 5.5 41 24-64 22-62 (88)
45 3k9o_B Ubiquitin, UBB+1; E2-25 67.7 8.1 0.00028 32.8 5.7 41 24-64 6-46 (96)
46 2uyz_B Small ubiquitin-related 67.0 8.2 0.00028 31.4 5.3 39 26-64 10-48 (79)
47 2rpr_A Flywch-type zinc finger 66.9 7.9 0.00027 32.6 5.3 45 293-344 26-73 (87)
48 3v6c_B Ubiquitin; structural g 66.5 8.2 0.00028 32.5 5.4 42 24-65 22-63 (91)
49 4hcn_B Polyubiquitin, ubiquiti 66.1 8.4 0.00029 33.1 5.4 42 24-65 27-68 (98)
50 3dbh_I NEDD8; cell cycle, acti 66.1 6.9 0.00024 32.5 4.8 41 24-64 17-57 (88)
51 2ec7_A GAG polyprotein (PR55GA 66.0 2.2 7.4E-05 31.9 1.4 22 815-836 4-25 (49)
52 3q3f_A Ribonuclease/ubiquitin 65.8 9.3 0.00032 37.3 6.2 58 7-64 88-150 (189)
53 2kd0_A LRR repeats and ubiquit 65.7 11 0.00038 31.4 6.0 39 27-65 19-57 (85)
54 4fbj_B NEDD8; effector-HOST ta 64.6 9.8 0.00033 31.9 5.4 42 24-65 5-46 (88)
55 1wyw_B Ubiquitin-like protein 64.2 9.3 0.00032 32.7 5.3 40 25-64 27-66 (97)
56 1a1t_A Nucleocapsid protein; s 63.8 2.5 8.5E-05 32.4 1.3 22 815-836 10-31 (55)
57 2npt_A Dual specificity mitoge 62.1 12 0.00041 31.5 5.2 52 35-89 30-83 (106)
58 2ojr_A Ubiquitin; lanthide-bin 61.9 12 0.00042 32.9 5.8 40 25-64 41-80 (111)
59 3plu_A Ubiquitin-like modifier 61.3 11 0.00039 32.2 5.2 43 24-66 26-68 (93)
60 3kks_A Integrase, IN; beta-str 61.1 29 0.00099 31.3 8.6 65 460-534 3-67 (152)
61 2hj8_A Interferon-induced 17 k 60.9 9.5 0.00032 32.0 4.7 39 27-65 12-50 (88)
62 2faz_A Ubiquitin-like containi 60.2 15 0.00051 29.6 5.7 38 27-64 10-49 (78)
63 1cl4_A Protein (GAG polyprotei 60.0 4 0.00014 31.8 2.0 21 816-836 29-49 (60)
64 1wxv_A BAG-family molecular ch 59.8 14 0.00049 31.0 5.7 38 28-65 15-57 (92)
65 2kjr_A CG11242; UBL, ubiquitin 59.7 19 0.00066 30.8 6.5 36 30-65 28-63 (95)
66 2kzr_A Ubiquitin thioesterase 59.5 6.4 0.00022 32.9 3.3 43 24-67 5-48 (86)
67 3vdz_A Ubiquitin-40S ribosomal 58.9 15 0.0005 32.4 5.7 42 24-65 40-81 (111)
68 2kdi_A Ubiquitin, vacuolar pro 58.8 14 0.00048 32.7 5.7 42 24-65 14-55 (114)
69 2kan_A Uncharacterized protein 58.6 15 0.00053 31.2 5.7 39 26-65 22-60 (94)
70 2cqf_A RNA-binding protein LIN 58.6 4.3 0.00015 32.1 1.9 17 819-835 31-47 (63)
71 1ttn_A DC-UBP, dendritic cell- 58.5 11 0.00038 32.8 4.9 39 26-64 30-68 (106)
72 2li8_A Protein LIN-28 homolog 57.4 5.7 0.0002 32.5 2.5 19 817-835 46-64 (74)
73 3m62_B UV excision repair prot 56.9 9.8 0.00033 33.3 4.2 42 24-65 6-47 (106)
74 1wy8_A NP95-like ring finger p 56.8 18 0.00063 30.0 5.8 39 27-65 15-55 (89)
75 2ihx_A Nucleocapsid (NC) prote 55.9 4.5 0.00015 31.7 1.6 19 818-836 31-49 (61)
76 2wyq_A HHR23A, UV excision rep 55.9 20 0.00067 29.4 5.8 42 24-65 10-54 (85)
77 2ihx_A Nucleocapsid (NC) prote 55.4 3.9 0.00013 32.1 1.2 20 817-836 4-23 (61)
78 1v5t_A 8430435I17RIK protein; 53.2 15 0.00053 30.8 4.7 39 24-63 12-51 (90)
79 1wm3_A Ubiquitin-like protein 52.4 22 0.00076 28.5 5.4 38 27-64 9-46 (72)
80 2ezd_A High mobility group pro 50.7 9.9 0.00034 23.9 2.1 15 794-808 2-16 (26)
81 1wgg_A Ubiquitin carboxyl-term 50.0 16 0.00055 31.2 4.4 37 28-64 15-52 (96)
82 3b08_A Polyubiquitin-C, ubiqui 49.4 45 0.0015 30.4 7.8 42 24-65 81-122 (152)
83 2l7r_A Ubiquitin-like protein 49.4 25 0.00086 29.7 5.5 42 24-65 22-63 (93)
84 2daf_A FLJ35834 protein; hypot 49.0 25 0.00087 31.4 5.5 38 28-65 25-62 (118)
85 1v5o_A 1700011N24RIK protein; 49.0 18 0.00063 31.1 4.7 38 28-65 20-57 (102)
86 2cqf_A RNA-binding protein LIN 49.0 5.6 0.00019 31.4 1.1 20 816-835 6-25 (63)
87 2klc_A Ubiquilin-1; ubiquitin- 48.9 29 0.00099 29.9 5.9 36 29-64 34-69 (101)
88 1wx7_A Ubiquilin 3; ubiquitin- 48.9 24 0.00083 30.5 5.5 40 25-65 23-62 (106)
89 1we7_A SF3A1 protein; structur 48.8 22 0.00076 31.4 5.3 38 27-64 43-80 (115)
90 3a4r_A Nfatc2-interacting prot 48.3 29 0.001 28.4 5.5 40 25-64 13-53 (79)
91 1j8c_A Ubiquitin-like protein 47.3 31 0.0011 31.0 6.1 37 29-65 41-77 (125)
92 3ts2_A Protein LIN-28 homolog 46.9 8.1 0.00028 36.2 2.1 20 817-836 119-138 (148)
93 2kj6_A Tubulin folding cofacto 46.7 25 0.00085 30.2 5.0 35 31-65 28-62 (97)
94 2daj_A KIAA0977 protein, COBL- 46.5 27 0.00094 29.1 4.8 40 23-62 14-53 (91)
95 4b6w_A Tubulin-specific chaper 46.4 23 0.00078 29.7 4.7 38 28-65 13-50 (86)
96 3m63_B Ubiquitin domain-contai 46.4 11 0.00036 32.7 2.6 37 28-64 36-72 (101)
97 1v86_A DNA segment, CHR 7, way 46.0 12 0.0004 32.0 2.8 37 28-64 25-61 (95)
98 2li8_A Protein LIN-28 homolog 45.8 7.8 0.00027 31.7 1.5 20 816-835 23-42 (74)
99 1uh6_A Ubiquitin-like 5; beta- 45.2 24 0.00083 30.6 4.7 42 24-65 33-74 (100)
100 1uel_A HHR23B, UV excision rep 44.9 34 0.0012 28.9 5.7 40 25-64 6-48 (95)
101 1t0y_A Tubulin folding cofacto 43.9 41 0.0014 30.0 6.3 35 31-65 19-53 (122)
102 3u30_A Ubiquitin, linear DI-ub 43.9 31 0.0011 32.7 5.8 42 24-65 25-66 (172)
103 1yqb_A Ubiquilin 3; structural 43.7 30 0.001 29.8 5.1 40 25-65 28-67 (100)
104 2pjh_A Protein NPL4, nuclear p 43.5 8.7 0.0003 31.8 1.5 41 26-67 11-51 (80)
105 2io0_B Small ubiquitin-related 43.4 33 0.0011 29.1 5.2 68 28-104 14-81 (91)
106 3l3u_A POL polyprotein; DNA in 43.1 66 0.0023 29.4 8.0 65 459-533 9-73 (163)
107 3b1l_X E3 ubiquitin-protein li 49.0 5.1 0.00017 32.3 0.0 40 25-64 6-45 (76)
108 2eke_C Ubiquitin-like protein 42.7 34 0.0012 30.0 5.3 37 28-64 39-75 (106)
109 1wx8_A Riken cDNA 4931431F19; 42.3 25 0.00085 29.7 4.4 37 29-65 26-62 (96)
110 3b08_A Polyubiquitin-C, ubiqui 41.9 34 0.0012 31.2 5.7 41 25-65 6-46 (152)
111 3rt3_B Ubiquitin-like protein 41.0 48 0.0016 30.8 6.6 41 24-64 7-48 (159)
112 1wju_A NEDD8 ultimate buster-1 40.5 30 0.001 29.9 4.6 38 28-65 28-65 (100)
113 3hph_A Integrase, IN; protein- 40.2 93 0.0032 30.1 9.0 66 460-535 61-126 (219)
114 3ts2_A Protein LIN-28 homolog 40.0 10 0.00036 35.4 1.6 19 817-835 97-115 (148)
115 2d07_B Ubiquitin-like protein 39.8 39 0.0013 28.6 5.2 38 27-64 25-62 (93)
116 2io1_B Small ubiquitin-related 39.5 39 0.0013 28.8 5.1 67 28-103 16-82 (94)
117 3u30_A Ubiquitin, linear DI-ub 38.4 62 0.0021 30.5 7.0 41 25-65 102-142 (172)
118 1cxq_A Avian sarcoma virus int 37.6 1.1E+02 0.0038 27.9 8.7 71 459-534 11-81 (162)
119 3rt3_B Ubiquitin-like protein 37.4 42 0.0014 31.2 5.5 40 25-64 87-126 (159)
120 1cl4_A Protein (GAG polyprotei 37.4 7 0.00024 30.4 0.0 19 818-836 2-20 (60)
121 1we6_A Splicing factor, putati 37.3 33 0.0011 30.0 4.4 38 28-65 39-77 (111)
122 1v6e_A Cytoskeleton-associated 36.5 47 0.0016 28.0 5.2 35 31-65 20-54 (95)
123 1c0m_A Protein (integrase); HI 36.1 1E+02 0.0035 30.5 8.6 71 459-534 10-80 (238)
124 3l0w_B Monoubiquitinated proli 35.7 50 0.0017 31.4 5.8 42 24-65 5-46 (169)
125 3nyb_B Protein AIR2; polya RNA 35.3 14 0.00048 30.9 1.5 20 817-836 46-65 (83)
126 2k8h_A Small ubiquitin protein 33.5 46 0.0016 29.3 4.7 73 25-106 32-104 (110)
127 2xzm_5 Ribosomal protein S26E 33.0 29 0.00098 30.8 3.1 27 794-825 2-28 (119)
128 1wz0_A Ubiquitin-like protein 32.5 40 0.0014 29.3 4.1 39 26-64 31-69 (104)
129 1fme_A FSD-EY peptide; beta-BE 32.4 30 0.001 21.6 2.2 19 271-289 7-25 (28)
130 1wgd_A Homocysteine-responsive 31.7 65 0.0022 26.9 5.3 38 28-65 16-57 (93)
131 3f2k_A Histone-lysine N-methyl 31.0 1.2E+02 0.004 29.9 8.0 91 469-562 65-178 (226)
132 1bco_A MUA domain II, bacterio 31.0 1E+02 0.0035 32.2 8.0 72 459-533 16-95 (327)
133 2lli_A Protein AIR2; RNA surve 30.9 20 0.0007 32.1 2.0 19 818-836 65-83 (124)
134 1x1m_A Ubiquitin-like protein 30.7 57 0.002 28.2 4.9 43 23-65 16-73 (107)
135 2lli_A Protein AIR2; RNA surve 30.4 46 0.0016 29.7 4.3 20 816-835 104-123 (124)
136 3u5c_a 40S ribosomal protein S 29.0 37 0.0013 30.1 3.2 27 794-825 2-28 (119)
137 3kyd_D Small ubiquitin-related 27.7 79 0.0027 28.0 5.2 37 28-64 49-85 (115)
138 3av9_A Integrase, IN; protein- 27.1 1.8E+02 0.0061 27.2 8.3 67 458-534 28-94 (183)
139 2nrr_A Uvrabc system protein C 26.9 99 0.0034 29.0 5.9 62 461-541 38-100 (159)
140 2jxx_A Nfatc2-interacting prot 26.7 1E+02 0.0034 26.4 5.5 53 27-83 33-86 (97)
141 1wf9_A NPL4 family protein; be 26.3 35 0.0012 29.6 2.7 36 28-64 16-52 (107)
142 2x78_A Integrase; viral protei 26.1 1.8E+02 0.0061 27.4 8.2 70 459-534 13-83 (200)
143 2bw3_A Transposase; DNA recomb 26.0 2.5E+02 0.0087 31.2 10.6 67 489-559 131-201 (534)
144 1wia_A Hypothetical ubiquitin- 25.5 63 0.0021 27.1 4.1 36 26-64 14-49 (95)
145 2kvr_A Ubiquitin carboxyl-term 24.9 66 0.0023 29.2 4.3 37 30-66 56-92 (130)
146 3u5e_m 60S ribosomal protein L 24.5 16 0.00054 33.1 0.0 40 25-64 6-45 (128)
147 1c6v_A Protein (SIV integrase) 24.1 1.7E+02 0.0058 26.2 7.3 64 459-532 9-72 (164)
148 3r45_C Holliday junction recog 23.8 63 0.0022 26.0 3.3 26 42-78 30-55 (81)
149 2dzm_A FAS-associated factor 1 23.6 72 0.0025 27.5 4.1 40 28-68 17-56 (100)
150 2nrt_A Uvrabc system protein C 23.2 1.4E+02 0.0049 29.6 6.6 62 461-541 43-105 (220)
151 3alr_A Nanos protein; zinc-fin 22.9 25 0.00086 30.3 1.0 21 816-836 70-93 (106)
152 1k8r_B Protein kinase BYR2; si 22.8 98 0.0034 26.2 4.4 75 24-103 3-79 (110)
153 2jya_A AGR_C_3324P, uncharacte 22.5 55 0.0019 28.6 3.0 32 267-302 49-80 (106)
154 2fnj_B Transcription elongatio 22.0 1.3E+02 0.0045 26.7 5.5 41 24-64 5-46 (118)
155 2xzm_9 RPS31E; ribosome, trans 21.8 19 0.00066 35.0 0.0 41 25-65 6-46 (189)
156 1y8x_B Ubiquitin-activating en 20.6 93 0.0032 26.7 4.1 57 28-85 3-59 (98)
157 2kdb_A Homocysteine-responsive 20.1 1.3E+02 0.0045 25.6 5.1 38 27-64 31-72 (99)
No 1
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=99.04 E-value=6.9e-10 Score=94.69 Aligned_cols=70 Identities=17% Similarity=0.351 Sum_probs=61.3
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCc---eeEEEEEecc
Q 003242 27 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGS---VTADVFVIGT 102 (837)
Q Consensus 27 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~---~~~~v~~~~~ 102 (837)
-|||+|||.++|.++|+||.+|+.+.|| .++.|.|+ |.+.||+|.|.|||++.+|..|.+ ..++|+|.+-
T Consensus 15 ~~GEkRIi~f~RPv~f~eL~~Kv~~~fG---q~ldL~y~---n~EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~ 87 (103)
T 2cu1_A 15 HRGEKRILQFPRPVKLEDLRSKAKIAFG---QSMDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVIN 87 (103)
T ss_dssp ETTEEEEEEEESSCCHHHHHHHHHHHHS---SCEEEEEC---SSSSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEEC
T ss_pred ecCeEEEEeccCCccHHHHHHHHHHHhC---CeeeEEEe---cceEEEeccCHHHHHHHHHHHccCCcccceEEEEecC
Confidence 3899999999999999999999999999 68899999 779999999999999998854432 4588887773
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=98.07 E-value=2.2e-05 Score=67.40 Aligned_cols=72 Identities=14% Similarity=0.281 Sum_probs=57.4
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCC-cceEEEEecCCCCCceEeecChHHHHHHHhccC--CceeEEEEEec
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEY-KSLSVKYFLPGNKQTLITICNDKDLKRMFDFHE--GSVTADVFVIG 101 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~--~~~~~~v~~~~ 101 (837)
+|+.+++.|+.+++|.+|..|+.++|++.. +.+++||- .|+.-+|++++|+||+..+..+. +...+-|+|++
T Consensus 14 ~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~--DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ihvf~ 88 (89)
T 1vd2_A 14 RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI--DEEGDPCTVSSQLELEEAFRLYELNKDSELLIHVFP 88 (89)
T ss_dssp SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC--CSSSCCEECCSHHHHHHHHHHHHHTSCCCEEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE--CCCCCcccccCHHHHHHHHHHHHccCCCCEEEEEcc
Confidence 468999999999999999999999999864 46999994 44588999999999999887221 22235566555
No 3
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=97.66 E-value=0.00029 Score=58.73 Aligned_cols=72 Identities=18% Similarity=0.427 Sum_probs=60.9
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhc---cCCceeEEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDF---HEGSVTADVFVI 100 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~---~~~~~~~~v~~~ 100 (837)
.+|. ||.|||-++|-+.|.|+.+|+...|| ..+.+.|. +..-+|++.|-+||++-++- +..-..++|.+.
T Consensus 9 fE~~-gEKRIi~f~RPvkf~dl~qkv~~afG---q~ldl~y~---nnEL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 81 (94)
T 2jrh_A 9 FEHN-GERRIIAFSRPVKYEDVEHKVTTVFG---QPLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILLL 81 (94)
T ss_dssp EEET-TEEEEEEECSSCCHHHHHHHHHHHHC---SSEEEEEE---CSSCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred EEec-CceEEEecCCCccHHHHHHHHHHHhC---CeeeeEEe---cceeEEeccCHHHHHHHHHHhccCccccceEEEEE
Confidence 4453 79999999999999999999999998 78899998 77899999999999988863 333345888887
Q ss_pred cc
Q 003242 101 GT 102 (837)
Q Consensus 101 ~~ 102 (837)
..
T Consensus 82 ~~ 83 (94)
T 2jrh_A 82 SQ 83 (94)
T ss_dssp EC
T ss_pred cC
Confidence 74
No 4
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=97.63 E-value=0.00015 Score=61.28 Aligned_cols=71 Identities=10% Similarity=0.234 Sum_probs=61.0
Q ss_pred CeEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEE
Q 003242 23 SLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVF 98 (837)
Q Consensus 23 ~~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~ 98 (837)
++.|. .|-+|.|+++++|++|..||++.+++..+.+.|.|.=| +...++ +.+|+||+.++....+. ++.++
T Consensus 9 KV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~-~s~~~v-i~~d~dl~~aw~~~~n~-~LtL~ 79 (83)
T 1oey_A 9 KVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR-DSNELV-PLSEDSMKDAWGQVKNY-CLTLW 79 (83)
T ss_dssp EEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT-TCSSCE-ECCTTTHHHHHTTCBTT-EEEEE
T ss_pred EEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC-CCCCee-ccChHHHHHHHHhccCC-cEEEE
Confidence 46677 89999999999999999999999999888999999766 557778 99999999999986555 36555
No 5
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=97.62 E-value=0.00031 Score=59.99 Aligned_cols=72 Identities=18% Similarity=0.428 Sum_probs=59.7
Q ss_pred CeEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhc---cCCceeEEEEE
Q 003242 23 SLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDF---HEGSVTADVFV 99 (837)
Q Consensus 23 ~~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~---~~~~~~~~v~~ 99 (837)
+++|. ||.|||-++|-+.|.|+.+|+...|| ..+.+.|. +..-+|++.|-+||++-+|- +..-..++|.|
T Consensus 35 KfE~~-gEKRIiqf~RPvkf~dl~qkv~~afG---q~ldl~y~---nnEL~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL 107 (111)
T 2c60_A 35 KFEHN-GERRIIAFSRPVKYEDVEHKVTTVFG---QPLDLHYM---NNELSILLKNQDDLDKAIDILDRSSSMKSLRILL 107 (111)
T ss_dssp EEEET-TEEEEEEECSSCCHHHHHHHHHHHHS---SCCEEEEE---CSSCEEECCSHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred EEEec-CceEEEecCCCccHHHHHHHHHHHhC---CeeeeEEe---cceEEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 34554 79999999999999999999999998 67889998 77899999999999998873 22223478877
Q ss_pred ec
Q 003242 100 IG 101 (837)
Q Consensus 100 ~~ 101 (837)
..
T Consensus 108 ~~ 109 (111)
T 2c60_A 108 LS 109 (111)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 6
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=97.62 E-value=0.00029 Score=59.52 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=59.2
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhc---cCCceeEEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDF---HEGSVTADVFVI 100 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~---~~~~~~~~v~~~ 100 (837)
.+| -||.|||-++|-+.|.|+.+|+...|| ..+.+.|. +..-+|++.|-+||++-+|- +..-..++|.|.
T Consensus 25 fE~-~gEkRIi~f~RPv~f~el~~kv~~afG---q~ldl~y~---nnEL~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL~ 97 (100)
T 2npt_B 25 FEH-RGEKRILQFPRPVKLEDLRSKAKIAFG---QSMDLHYT---NNELVIPLTTQDDLDKAVELLDRSIHMKSLKILLV 97 (100)
T ss_dssp EEE-TTEEEEEEECSSCCHHHHHHHHHHHHT---SCEEEEEE---ETTEEEECCCHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred EEe-cCceEEEecCCCccHHHHHHHHHHHhC---CeeeeEEe---cceeEEecccHHHHHHHHHHhccCccccceEEEEe
Confidence 445 479999999999999999999999998 78899998 77899999999999998873 222234788776
Q ss_pred c
Q 003242 101 G 101 (837)
Q Consensus 101 ~ 101 (837)
.
T Consensus 98 ~ 98 (100)
T 2npt_B 98 I 98 (100)
T ss_dssp E
T ss_pred c
Confidence 4
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=97.40 E-value=0.0006 Score=60.02 Aligned_cols=71 Identities=13% Similarity=0.218 Sum_probs=60.0
Q ss_pred ecCceEEEEeCCC-----------CChHHHHHHHHHHh-CCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCcee
Q 003242 27 DGGEANAVAINPE-----------THFGDLKLKLAELL-NLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVT 94 (837)
Q Consensus 27 ~gg~~~~~~v~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~ 94 (837)
.|+|.|=++++++ .||.+|..++.+.| ++....++++|. .|+.-||++++|++|...+.... -..
T Consensus 18 ~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~--DedGDlItiSsDeEL~~Al~~~~-~~~ 94 (102)
T 2kkc_A 18 AAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYR--AERGDLVAFSSDEELTMAMSYVK-DDI 94 (102)
T ss_dssp CEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEEEECSHHHHHHHHHHCC-SSE
T ss_pred CCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEE--CCCCCEEEecCHHHHHHHHHhcC-CCe
Confidence 4788999999874 58999999999999 566567999997 56688999999999999998766 348
Q ss_pred EEEEEe
Q 003242 95 ADVFVI 100 (837)
Q Consensus 95 ~~v~~~ 100 (837)
+||||.
T Consensus 95 lRlyVk 100 (102)
T 2kkc_A 95 FRIYIK 100 (102)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
No 8
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=97.37 E-value=0.0012 Score=59.40 Aligned_cols=71 Identities=13% Similarity=0.213 Sum_probs=60.3
Q ss_pred ecCceEEEEeCCCC-----------ChHHHHHHHHHHh-CCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCcee
Q 003242 27 DGGEANAVAINPET-----------HFGDLKLKLAELL-NLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVT 94 (837)
Q Consensus 27 ~gg~~~~~~v~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~ 94 (837)
.++|.|=++++++. ||.+|..++.+.| ++....++++|. .|+.-||++++|++|..-+..... ..
T Consensus 33 ~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~Yk--DEdGDlItISsDeEL~~Al~~~~~-~~ 109 (117)
T 2ktr_A 33 AAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYR--AERGDLVAFSSDEELTMAMSYVKD-DI 109 (117)
T ss_dssp CEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEE--CTTCCEEEECSHHHHHHHHHHCCS-SE
T ss_pred CCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEE--CCCCCEEEecCHHHHHHHHHhcCC-Ce
Confidence 46899999998653 9999999999999 666668999997 566789999999999998887653 47
Q ss_pred EEEEEe
Q 003242 95 ADVFVI 100 (837)
Q Consensus 95 ~~v~~~ 100 (837)
+||||.
T Consensus 110 lRlyVk 115 (117)
T 2ktr_A 110 FRIYIK 115 (117)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 899985
No 9
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=97.36 E-value=0.00068 Score=57.34 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=61.5
Q ss_pred eecCceEEEEeCCC--CChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEEe
Q 003242 26 YDGGEANAVAINPE--THFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVI 100 (837)
Q Consensus 26 y~gg~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~~ 100 (837)
.-|+|.|=.+++|+ .+|.+|.+++..++++...++++.|+= ++--||+++|||+|.+-+..... -+||||-
T Consensus 12 kf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D--~dGDLlpInnDdnl~~Al~~a~p--lLRl~Iq 84 (86)
T 1wmh_B 12 KFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD--AHGDLLPLTNDDSLHRALASGPP--PLRLLVQ 84 (86)
T ss_dssp EETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC--TTSCEEECCSHHHHHHHTTSSSS--CEEEEEE
T ss_pred ecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC--CCCCEeeecCHHHHHHHHHhCCC--cEEEEEE
Confidence 34889999999977 899999999999999887799999983 56789999999999999986633 7999874
No 10
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=97.32 E-value=0.00034 Score=60.79 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=49.2
Q ss_pred CceEEEEeCCCCChHHHHHHHHHHhCCCC-----cceEEEEecCCCCCceEeecChHHHHHHHhc
Q 003242 29 GEANAVAINPETHFGDLKLKLAELLNLEY-----KSLSVKYFLPGNKQTLITICNDKDLKRMFDF 88 (837)
Q Consensus 29 g~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~ 88 (837)
|+++.|.|+.+|+|.+|+.||.+.+++.. ..+.|||+ .|+.-.|++.+|+||+..++-
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk--DEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE--CSSSCEEEECSHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE--cCCCCEEEEcCHHHHHHHHHH
Confidence 78999999999999999999999997631 23689996 456689999999999988773
No 11
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=96.86 E-value=0.0016 Score=54.22 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=48.9
Q ss_pred ceEEEEeCCCCChHHHHHHHHHHhCCC-----CcceEEEEecCCCCCceEeecChHHHHHHHh
Q 003242 30 EANAVAINPETHFGDLKLKLAELLNLE-----YKSLSVKYFLPGNKQTLITICNDKDLKRMFD 87 (837)
Q Consensus 30 ~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~ 87 (837)
+++.|.|+.+|+|.+|+.||.+.+++. ...+.+||+ .|+.-.|++.+|+||+.-++
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk--DEdGD~Vti~sddDl~~A~~ 62 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ--DEDGDFVVLGSDEDWNVAKE 62 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE--ETTTEEEECCSTTHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE--cCCCCEEEEcCHHHHHHHHH
Confidence 678999999999999999999999865 356899996 44778999999999997766
No 12
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=94.59 E-value=0.18 Score=42.27 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=48.0
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCC-CceEeecChHHHHHHHhccCC
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNK-QTLITICNDKDLKRMFDFHEG 91 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~-~~l~~~~~d~dl~~m~~~~~~ 91 (837)
+-|. |+--+|.||.+|+|++|..||++.+.++ +.+.+-| . +|+ -. .|.+|+||+.-++.+.-
T Consensus 17 ~yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~y-k-de~~g~--~i~sD~dl~~aiqrn~K 79 (85)
T 1ip9_A 17 FYYK-DDIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTK-L-FDGSGE--EIKTDSQVSNIIQAKLK 79 (85)
T ss_dssp ECBT-TCCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEEC-C-SSSCCS--CCCSHHHHHHHHHTTCC
T ss_pred EEec-CcEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEe-c-CCCCCC--cccCHHHHHHHHHhcCe
Confidence 3455 5788999999999999999999999874 3333444 3 554 33 99999999999987753
No 13
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=94.20 E-value=0.16 Score=42.72 Aligned_cols=56 Identities=13% Similarity=0.360 Sum_probs=48.0
Q ss_pred cCceEEEEeC--CCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHh
Q 003242 28 GGEANAVAIN--PETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFD 87 (837)
Q Consensus 28 gg~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~ 87 (837)
.|+++.+.|+ |+++|.|+...+...||++ ++.+||. .|++-.|+|+++.++..++.
T Consensus 14 ~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~--DEenD~v~i~Sq~E~eEAlk 71 (87)
T 2bkf_A 14 KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL--DEENEEVSINSQGEYEEALK 71 (87)
T ss_dssp TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEE--CTTSCEEEECSHHHHHHHHH
T ss_pred cCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEE--cCCCCEEEEecHHHHHHHHH
Confidence 5788887774 4999999999999999975 8899994 55577899999999998876
No 14
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=92.46 E-value=0.26 Score=42.58 Aligned_cols=73 Identities=11% Similarity=0.285 Sum_probs=54.9
Q ss_pred eEeecCceEEEEe--CCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCC-ceeEEEEEe
Q 003242 24 LSYDGGEANAVAI--NPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEG-SVTADVFVI 100 (837)
Q Consensus 24 ~~y~gg~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~-~~~~~v~~~ 100 (837)
+.| .||++.+.| .++++|.|+...+...|+++ ++.|||. .|++-.|+|.++++++.++.-... ...+++.|.
T Consensus 19 V~f-~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~--DEenD~V~i~Sq~E~eEAlkva~k~~n~L~m~V~ 93 (101)
T 1wj6_A 19 VTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYL--DEENEEVSINSQGEYEEALKMAVKQGNQLQMQVH 93 (101)
T ss_dssp EEE-TTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEE--CTTSCEECCCSHHHHHHHHHHHHHHTSEEEEECC
T ss_pred EEE-cCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEe--cCCCCEEEEecHHHHHHHHHHhccCCCEEEEEEe
Confidence 344 578888777 45999999999999999975 7899994 555778999999999988763221 123666654
Q ss_pred c
Q 003242 101 G 101 (837)
Q Consensus 101 ~ 101 (837)
.
T Consensus 94 ~ 94 (101)
T 1wj6_A 94 E 94 (101)
T ss_dssp B
T ss_pred e
Confidence 4
No 15
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=91.54 E-value=0.073 Score=35.43 Aligned_cols=21 Identities=24% Similarity=0.737 Sum_probs=18.5
Q ss_pred ceEeCCCCCCCCcCcCCCCCC
Q 003242 816 RTVTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 816 r~~~Cs~C~~~GHNk~tC~~~ 836 (837)
+...|-+|++.||-.+.|+.+
T Consensus 5 ~~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 5 KVIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCSS
T ss_pred CCCEEEECCccccCHhHCccc
Confidence 456899999999999999875
No 16
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.75 E-value=1.3 Score=38.17 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=49.5
Q ss_pred cCceEEEEeCCCC----ChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCC
Q 003242 28 GGEANAVAINPET----HFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEG 91 (837)
Q Consensus 28 gg~~~~~~v~~~~----~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~ 91 (837)
|-.+|=|.|..++ +|.||+.-+...|. .+.+.|+|+=+. --||.|-+|||+.-|++.+-+
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~--~~DIaLNYrD~e--GDLIrilddeDv~lmi~~sr~ 80 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQ--REDIALNYRDAE--GDLVRLLSDEDVALMVRQARG 80 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHC--CSSEEEEEECTT--SCEEECCSHHHHHHHHHHCCC
T ss_pred CceeeeEEEccccccCCCHHHHHHHHHHHhc--ccceeeeeecCC--CCEEEEcchHHHHHHHHHhhc
Confidence 4567778887765 79999999999997 568999997443 459999999999999997744
No 17
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=89.12 E-value=6.8 Score=41.63 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=40.2
Q ss_pred cccceEEEEEEecCCCCeEEEEEEEec---cCChhHHHHHHHHHHHhh----cC----CCcEEEEecCch
Q 003242 472 KYHEILLTATALDGDDCIFPVAFAIVD---TENDDSWNWFLEELRSAV----SS----SRSITFVSDKQK 530 (837)
Q Consensus 472 ~y~~~Ll~a~g~D~~~~~~plafalv~---~E~~es~~wfL~~lk~~~----~~----~~p~~iisD~~~ 530 (837)
.+++.+++..+.+..| .+++.+++ .-+.+.|..+|+.+...+ +. ..+.+|+.|...
T Consensus 186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~ 252 (345)
T 3hot_A 186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAP 252 (345)
T ss_dssp TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCT
T ss_pred CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCC
Confidence 4556777777788777 56777776 568899999998876664 22 346789999865
No 18
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=88.33 E-value=0.22 Score=35.80 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=18.0
Q ss_pred eEeCCCCCCCCcCcCCCCCC
Q 003242 817 TVTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 817 ~~~Cs~C~~~GHNk~tC~~~ 836 (837)
...|-+|++.||-.+.||..
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~ 29 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKK 29 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSS
T ss_pred CCeeeECCCCCcchhhCcCC
Confidence 46899999999999999974
No 19
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=87.83 E-value=0.24 Score=32.03 Aligned_cols=19 Identities=42% Similarity=0.803 Sum_probs=17.2
Q ss_pred EeCCCCCCCCcCcCCCCCC
Q 003242 818 VTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 818 ~~Cs~C~~~GHNk~tC~~~ 836 (837)
..|-+|++.||..+.||..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4799999999999999975
No 20
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=87.44 E-value=1.1 Score=36.92 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=33.5
Q ss_pred EEEEEeccCCCceEEEEEEeCCcceEEEEeecCCCccC
Q 003242 306 RASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCG 343 (837)
Q Consensus 306 r~~~~C~~~gCpwri~as~~~~~~~~~I~~~~~~H~C~ 343 (837)
|-.++|+..||+++-...+..++....+.++.++|||.
T Consensus 35 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~ 72 (76)
T 2ayd_A 35 RSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHD 72 (76)
T ss_dssp EEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSC
T ss_pred eeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCC
Confidence 56689999999999999888777777888999999998
No 21
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=85.57 E-value=1.4 Score=36.38 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=32.9
Q ss_pred EEEEEeccCCCceEEEEEEeCCcceEEEEeecCCCccC
Q 003242 306 RASGMCAAEGCSWSFYASWVPSERVFKIKKMNETHTCG 343 (837)
Q Consensus 306 r~~~~C~~~gCpwri~as~~~~~~~~~I~~~~~~H~C~ 343 (837)
|-.++|+..||+++-...+..++....+.++.++|||.
T Consensus 38 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~ 75 (78)
T 1wj2_A 38 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 75 (78)
T ss_dssp EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSC
T ss_pred eEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCC
Confidence 55689999999999999887766677788999999998
No 22
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=85.15 E-value=0.52 Score=36.52 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=17.9
Q ss_pred eEeCCCCCCCCcCcCCCCCC
Q 003242 817 TVTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 817 ~~~Cs~C~~~GHNk~tC~~~ 836 (837)
..+|-+|++.||-.+.||..
T Consensus 23 ~~~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 23 RDQCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp TTBCSSSCCBSSCGGGCTTC
T ss_pred CCcceeCCCCCcccccCcCC
Confidence 45899999999999999974
No 23
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=83.79 E-value=0.51 Score=35.48 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=14.5
Q ss_pred eEeCCCCCCCCcCcCCCCCC
Q 003242 817 TVTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 817 ~~~Cs~C~~~GHNk~tC~~~ 836 (837)
...|-+|++.||-.+.||..
T Consensus 27 ~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 27 RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCSCSSSCCSSCCGGGCCSS
T ss_pred CCeeCcCCCcCCccCCCcCC
Confidence 35677888888888888753
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=78.85 E-value=3.3 Score=33.31 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=36.8
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
++..+|++..+.|+.+.+-.+|+.+|++..+++++...|-|
T Consensus 5 vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~ 45 (76)
T 3a9j_A 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (76)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 34556888899999999999999999999999999988888
No 25
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=77.99 E-value=0.82 Score=32.50 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=16.4
Q ss_pred EeCCCCCCCCcCcCCCCC
Q 003242 818 VTCTKCKGIGHNKLSCKE 835 (837)
Q Consensus 818 ~~Cs~C~~~GHNk~tC~~ 835 (837)
..|-+|++.||-.+.||+
T Consensus 22 ~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp SSCTTTCCSSSCTTTSCC
T ss_pred CccccCCCCCCccCcCcC
Confidence 479999999999999985
No 26
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=76.20 E-value=4.8 Score=32.48 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=35.9
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+. +|++..+.|+.+.+-.+|+.+|++..|++.+...|-|.
T Consensus 10 k~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 10 KS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp EE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 44 78888899999999999999999999999998888874
No 27
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=75.92 E-value=1.2 Score=31.65 Aligned_cols=18 Identities=33% Similarity=0.822 Sum_probs=16.5
Q ss_pred eCCCCCCCCcCcCCCCCC
Q 003242 819 TCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 819 ~Cs~C~~~GHNk~tC~~~ 836 (837)
+|-+|++.||-.+.||..
T Consensus 2 ~C~~Cg~~GH~a~~C~~~ 19 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP 19 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC
T ss_pred eeeccCCCCcccccCCCC
Confidence 699999999999999964
No 28
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=75.26 E-value=4.3 Score=32.59 Aligned_cols=41 Identities=15% Similarity=0.193 Sum_probs=36.2
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+..+|++..+.|+.+.+-.+|+.++++..+++++...|-|.
T Consensus 6 k~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 6 KTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp ECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred ECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 34467888999999999999999999999999998888883
No 29
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=74.17 E-value=4.9 Score=32.79 Aligned_cols=41 Identities=10% Similarity=0.222 Sum_probs=36.7
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
++..+|++..+.|+.+.+-.+|+.+|++..|++++...|-|
T Consensus 9 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 49 (79)
T 3phx_B 9 VRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (79)
T ss_dssp EECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE
Confidence 34557888999999999999999999999999999888888
No 30
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=73.67 E-value=4.5 Score=34.80 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=42.1
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChH
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDK 80 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~ 80 (837)
+|+..-+.++.+|+-.+|+.+|...+|++...+.|.|.-+.++...+.+.+|.
T Consensus 21 ~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~ 73 (97)
T 1wjn_A 21 ERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDL 73 (97)
T ss_dssp SSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCc
Confidence 56666788999999999999999999999999999997544334455555543
No 31
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=73.50 E-value=3.4 Score=35.14 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=47.9
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEEec
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIG 101 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~~~ 101 (837)
+-|.+|+..-|-|..+++..|...+.|+.+|++.+.+.|||+ . ..+ ||--.|.|..=...+.+-+..
T Consensus 14 Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~----~-k~l------DLSlpfRlsgLpnnAkLELv~ 80 (90)
T 2al3_A 14 VLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQ----R-TVL------DLSLQWRFANLPNNAKLEMVP 80 (90)
T ss_dssp EECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEET----T-EEE------SSSCBHHHHCCCSSCEEEEEC
T ss_pred EEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeC----C-Eec------cccceeEecCCCCCCEEEEEE
Confidence 345579999999999999999999999999999987777774 2 333 333456666444444444444
No 32
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=72.37 E-value=1.5 Score=30.64 Aligned_cols=15 Identities=33% Similarity=0.868 Sum_probs=7.2
Q ss_pred CCCCCCCCcCcCCCC
Q 003242 820 CTKCKGIGHNKLSCK 834 (837)
Q Consensus 820 Cs~C~~~GHNk~tC~ 834 (837)
|-+|++.||-.+.||
T Consensus 3 C~~Cg~~GH~~~~C~ 17 (37)
T 2bl6_A 3 CYNCGKPGHLSSQCR 17 (37)
T ss_dssp BSSSCCSSCCTTTSS
T ss_pred ccccCCCCcchhhCc
Confidence 444444444444444
No 33
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.34 E-value=6 Score=32.25 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=35.2
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 26 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 26 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
..+|++..+.|+.+.+-.+|+.+|++..+++.+...|-|
T Consensus 14 ~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~ 52 (81)
T 2dzi_A 14 ALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF 52 (81)
T ss_dssp ETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE
Confidence 346778889999999999999999999999999888888
No 34
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=71.64 E-value=5.7 Score=32.73 Aligned_cols=40 Identities=10% Similarity=0.216 Sum_probs=36.0
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
+...|++..+.|+.+.+-.+|+.+|++..+++++...|-|
T Consensus 9 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~ 48 (85)
T 3mtn_B 9 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 48 (85)
T ss_dssp ECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 4456788899999999999999999999999999888888
No 35
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=70.91 E-value=6.3 Score=33.80 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=36.8
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
++..+|++..+.|+.+.+..+|+.+|++..+++++...|-|
T Consensus 5 Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~ 45 (98)
T 1yx5_B 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 45 (98)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE
Confidence 34557888899999999999999999999999999999988
No 36
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=70.79 E-value=6.1 Score=33.16 Aligned_cols=41 Identities=7% Similarity=0.189 Sum_probs=37.4
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
++..+|++..+.|+.+.+-.+|+.+|.+..++..+...|-|
T Consensus 10 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 50 (90)
T 4dwf_A 10 VKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 50 (90)
T ss_dssp EEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 45667899999999999999999999999999999888888
No 37
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=70.71 E-value=1.5 Score=33.70 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=16.1
Q ss_pred ceEeCCCCCCCCcCcCCCCCC
Q 003242 816 RTVTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 816 r~~~Cs~C~~~GHNk~tC~~~ 836 (837)
+...|-+|++.||-.+.||..
T Consensus 32 ~~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 32 RKKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp SCCBCTTTCCBSSCGGGCSSS
T ss_pred CCCEeCCCCCcCCccCCCcCc
Confidence 446788888888888888763
No 38
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=70.51 E-value=5.9 Score=32.67 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=36.7
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+...|++..+.|+.+.+-.+|+.+|++..+++++...|-|.
T Consensus 9 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~ 49 (85)
T 3n3k_B 9 KTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp ECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEEC
Confidence 44578889999999999999999999999999998888883
No 39
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=70.03 E-value=1.8 Score=30.30 Aligned_cols=18 Identities=39% Similarity=0.815 Sum_probs=16.4
Q ss_pred EeCCCCCCCCcCcCCCCC
Q 003242 818 VTCTKCKGIGHNKLSCKE 835 (837)
Q Consensus 818 ~~Cs~C~~~GHNk~tC~~ 835 (837)
..|-+|++.||-.+.||+
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 479999999999999985
No 40
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.74 E-value=7.5 Score=32.29 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=36.1
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+...|++..+.|+.+.+..+|+.+|++..+++++...|-|.
T Consensus 13 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 13 KNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp EETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEET
T ss_pred EcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEEC
Confidence 34457888899999999999999999999999998888883
No 41
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=69.30 E-value=8.1 Score=32.22 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=37.8
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
++..+|++.-+.|+.+.+-.+|+.+|.+..|++++...|-|.
T Consensus 15 vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 15 VENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp EEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEEC
Confidence 355678999999999999999999999999999998888884
No 42
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=69.02 E-value=7 Score=32.83 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=36.6
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
+-.+|++..+.|+.+.+-.+|+.+|++..+++++...|-|
T Consensus 15 ~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~ 54 (88)
T 1sif_A 15 KTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54 (88)
T ss_dssp EETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred EeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE
Confidence 4567888999999999999999999999999999999988
No 43
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.65 E-value=2 Score=33.09 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=17.5
Q ss_pred ceEeCCCCCCCCcCcCCCCC
Q 003242 816 RTVTCTKCKGIGHNKLSCKE 835 (837)
Q Consensus 816 r~~~Cs~C~~~GHNk~tC~~ 835 (837)
+.+.|=+|++.||-.+.||.
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSG
T ss_pred CCCccccCCCcCcccccCCC
Confidence 35689999999999999993
No 44
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=67.91 E-value=7.8 Score=32.32 Aligned_cols=41 Identities=7% Similarity=0.189 Sum_probs=37.6
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
++..+|.+..+.|+.+.+-.+|+.+|++..+++++...|-|
T Consensus 22 Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~ 62 (88)
T 4eew_A 22 VKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY 62 (88)
T ss_dssp EEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE
Confidence 56678899999999999999999999999999999888888
No 45
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=67.66 E-value=8.1 Score=32.79 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=37.0
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
++...|++..+.|+.+.+-.+|+.+|++..+++.+...|-|
T Consensus 6 vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~ 46 (96)
T 3k9o_B 6 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46 (96)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE
Confidence 45567888999999999999999999999999999888888
No 46
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=67.05 E-value=8.2 Score=31.42 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=35.3
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 26 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 26 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
...|++..+.|+++.+..+|+.++++..|++++...|-|
T Consensus 10 ~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~ 48 (79)
T 2uyz_B 10 GQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 48 (79)
T ss_dssp CTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE
Confidence 346778889999999999999999999999999988888
No 47
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=66.86 E-value=7.9 Score=32.59 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=32.4
Q ss_pred cceEEEEEeeCccEEEEEecc---CCCceEEEEEEeCCcceEEEEeecCCCccCC
Q 003242 293 HRFRYKFKKNETSRASGMCAA---EGCSWSFYASWVPSERVFKIKKMNETHTCGE 344 (837)
Q Consensus 293 ~gf~~~~~ks~~~r~~~~C~~---~gCpwri~as~~~~~~~~~I~~~~~~H~C~~ 344 (837)
.||.|...+....+....|.. .+|++||.... . . | .....|||++
T Consensus 26 ~Gy~Y~~~~~~~~~~yWrC~~~~~~kCrARi~T~~--~--~--~-~~~~~HnH~p 73 (87)
T 2rpr_A 26 ESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQG--H--R--I-MVMRSHCHQP 73 (87)
T ss_dssp TTEEEEEEEECSSCEEEEEGGGTTSCCCCEEEEET--T--E--E-EECSCCSSCC
T ss_pred CCEEEEeeecCCCcEEEEecCCCCCCCCEEEEEcC--C--C--E-ECCCCcCCCC
Confidence 478888777777778899985 58999988653 2 2 2 2457799985
No 48
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=66.53 E-value=8.2 Score=32.52 Aligned_cols=42 Identities=10% Similarity=0.187 Sum_probs=37.3
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
++..+|++..+.|+.+.+-.+|+.+|++..|+..+...|-|.
T Consensus 22 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 22 VNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp EECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEEC
Confidence 345578899999999999999999999999999998888883
No 49
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=66.13 E-value=8.4 Score=33.06 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=37.6
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
++..+|++..+.|+.+.+-.+|+.+|++..+++++...|-|.
T Consensus 27 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 27 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 455688999999999999999999999999999998888883
No 50
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=66.12 E-value=6.9 Score=32.50 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=36.5
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
++..+|++..+.|+.+.+-.+|+.+|++..+++++...|-|
T Consensus 17 vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~ 57 (88)
T 3dbh_I 17 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57 (88)
T ss_dssp EECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE
Confidence 34457889999999999999999999999999998888888
No 51
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=65.98 E-value=2.2 Score=31.95 Aligned_cols=22 Identities=23% Similarity=0.712 Sum_probs=19.1
Q ss_pred cceEeCCCCCCCCcCcCCCCCC
Q 003242 815 HRTVTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 815 kr~~~Cs~C~~~GHNk~tC~~~ 836 (837)
++...|-+|++.||..+.||..
T Consensus 4 ~r~~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 4 RKVIRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CCCCBCTTTCCBTCCTTTCCCS
T ss_pred CCcCeeeecCCCCcChhhCcCC
Confidence 4567899999999999999874
No 52
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=65.76 E-value=9.3 Score=37.33 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=48.1
Q ss_pred EEEEecCCeeccCCCC-----CeEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 7 ILICQSGGEFVTKDDG-----SLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 7 ~~~~~~gg~~~~~~~~-----~~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
++++|-+|.+....|. .++...|++..+.|+.+.|-.+|+.+|++..+++++...|-|
T Consensus 88 r~~~s~dg~~y~T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~ 150 (189)
T 3q3f_A 88 RILYSSDWLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 150 (189)
T ss_dssp EEEEETTCCEEEESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE
T ss_pred ceEecCCCcEEEcccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE
Confidence 5678888886655554 345568999999999999999999999999999988887777
No 53
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=65.67 E-value=11 Score=31.37 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=35.8
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 27 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 27 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
.+|++..+.|+.+.+..+|+.+|.+..+++++...|-|.
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEET
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 588899999999999999999999999999998888873
No 54
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=64.56 E-value=9.8 Score=31.90 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=37.0
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
++..+|++..+.|+.+.+-.+|+.+|++..+++++...|-|.
T Consensus 5 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEEC
Confidence 345578898999999999999999999999999998888883
No 55
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=64.16 E-value=9.3 Score=32.74 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=36.3
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
+...|++..+.|.++.+..+|+.++++..|++.+...|-|
T Consensus 27 k~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif 66 (97)
T 1wyw_B 27 IGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 66 (97)
T ss_dssp ECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE
Confidence 3456888899999999999999999999999999988888
No 56
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=63.78 E-value=2.5 Score=32.40 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=18.9
Q ss_pred cceEeCCCCCCCCcCcCCCCCC
Q 003242 815 HRTVTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 815 kr~~~Cs~C~~~GHNk~tC~~~ 836 (837)
++...|-+|++.||-.+.||..
T Consensus 10 ~~~~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 10 RKTVKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp GGTCBCTTTCCBSSCGGGCSSC
T ss_pred CCCcceeeeCCCCcChhhcCCC
Confidence 4556899999999999999864
No 57
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=62.07 E-value=12 Score=31.55 Aligned_cols=52 Identities=21% Similarity=0.432 Sum_probs=40.5
Q ss_pred EeC--CCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhcc
Q 003242 35 AIN--PETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFH 89 (837)
Q Consensus 35 ~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~ 89 (837)
+|+ ..++|.|+..-|...+. +...-.|.| ..|+.-=|+|.+||.|+.|+...
T Consensus 30 aV~~~~~L~FrDvL~~I~~vmP-~aT~TAFeY--EDE~gDRITVRSDeE~kAMlsyy 83 (106)
T 2npt_A 30 TVHSGPQLLFRDVLDVIGQVLP-EATTTAFEY--EDEDGDRITVRSDEEMKAMLSYY 83 (106)
T ss_dssp EECC--CCCHHHHHHHHHHHST-TSCCSEEEE--ECTTSCEEEECSHHHHHHHHHHH
T ss_pred ccCCcccccHHHHHHHHHHhCc-cceeeeeee--ccccCCeeEEcchHHHHHHHHHH
Confidence 455 67999999999999995 234557888 45666679999999999999843
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=61.94 E-value=12 Score=32.85 Aligned_cols=40 Identities=10% Similarity=0.216 Sum_probs=36.1
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
+...|++..+.|+.+.+..+|+.+|++..+++.+...|-|
T Consensus 41 k~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 80 (111)
T 2ojr_A 41 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80 (111)
T ss_dssp ECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE
T ss_pred EcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE
Confidence 3446889999999999999999999999999999888888
No 59
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=61.34 E-value=11 Score=32.17 Aligned_cols=43 Identities=16% Similarity=0.071 Sum_probs=39.2
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEec
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFL 66 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l 66 (837)
+...+|.+..+.|..+.+=.+|+++|++..|++++...|+|.-
T Consensus 26 Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~G 68 (93)
T 3plu_A 26 VNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGG 68 (93)
T ss_dssp EECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETT
T ss_pred EECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCC
Confidence 4556899999999999999999999999999999999999954
No 60
>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A
Probab=61.12 E-value=29 Score=31.29 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=47.6
Q ss_pred CeEEeecccccccccceEEEEEEecCCCCeEEEEEEEeccCChhHHHHHHHHHHHhhcCCCcEEEEecCchhHHH
Q 003242 460 PLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLME 534 (837)
Q Consensus 460 ~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~E~~es~~wfL~~lk~~~~~~~p~~iisD~~~~l~~ 534 (837)
.++.+|.|+..++ +.++.+|...+.. +++.+ .+++.+...-+|..+....+ |..|.||+......
T Consensus 3 ~~w~~D~t~~~~~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s 67 (152)
T 3kks_A 3 HLWQMDNTHWNKT-----IIWVAVETNSGLV-EAQVI-PEETALQVALCILQLIQRYT---VLHLHSDNGPCFTA 67 (152)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHS
T ss_pred cEEEEeeeeeCCE-----EEEEEEEcCCCcE-EEEEe-CCcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhH
Confidence 5788999988433 5566677666544 56555 47888888877777777665 89999999988754
No 61
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=60.91 E-value=9.5 Score=31.95 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=34.6
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 27 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 27 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
..|++..+.|+.+.+..+|+.+|++..+++++...|-|.
T Consensus 12 ~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 50 (88)
T 2hj8_A 12 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFE 50 (88)
T ss_dssp TTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESS
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEEC
Confidence 357788899999999999999999999999998888773
No 62
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=60.19 E-value=15 Score=29.63 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=33.2
Q ss_pred ecCce-EEEE-eCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 27 DGGEA-NAVA-INPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 27 ~gg~~-~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
.+|++ ..+. |+.+.+-.+|+.+|++..+++++...|-|
T Consensus 10 ~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~ 49 (78)
T 2faz_A 10 MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY 49 (78)
T ss_dssp TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 34666 4788 99999999999999999999999888888
No 63
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=60.05 E-value=4 Score=31.84 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.4
Q ss_pred ceEeCCCCCCCCcCcCCCCCC
Q 003242 816 RTVTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 816 r~~~Cs~C~~~GHNk~tC~~~ 836 (837)
+...|-+|++.||-.+.|+..
T Consensus 29 ~~~~C~~Cg~~GH~ar~C~~~ 49 (60)
T 1cl4_A 29 VPGLCPRCKRGKHWANECKSK 49 (60)
T ss_dssp CCCSCSSCSSCSSCSTTCCCT
T ss_pred CCcceeECCCCCCccCcCCCc
Confidence 346899999999999999975
No 64
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=59.81 E-value=14 Score=31.02 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=33.5
Q ss_pred cCceEEEEeCCC-----CChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 28 GGEANAVAINPE-----THFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 28 gg~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+|++..|.|+.+ .+..+|+.+|.+..++.++...|-|.
T Consensus 15 ~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 15 SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEET
T ss_pred CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 466778899995 99999999999999999999999884
No 65
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=59.72 E-value=19 Score=30.80 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=32.3
Q ss_pred ceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 30 EANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 30 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
.+--+.|+.+++-.+|+.||.+..|++++...|-|.
T Consensus 28 ~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 28 VAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred eEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 366688999999999999999999999999888884
No 66
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=59.55 E-value=6.4 Score=32.94 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=35.4
Q ss_pred eEeecCceEEEE-eCCCCChHHHHHHHHHHhCCCCcceEEEEecC
Q 003242 24 LSYDGGEANAVA-INPETHFGDLKLKLAELLNLEYKSLSVKYFLP 67 (837)
Q Consensus 24 ~~y~gg~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~ 67 (837)
++..+|. +++. |+.+.+..||+.+|++..++..+...|.|--|
T Consensus 5 vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p 48 (86)
T 2kzr_A 5 CKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYP 48 (86)
T ss_dssp EEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSC
T ss_pred EEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCC
Confidence 5667885 4577 99999999999999999999877777877544
No 67
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=58.88 E-value=15 Score=32.41 Aligned_cols=42 Identities=10% Similarity=0.202 Sum_probs=37.7
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
++...|++..+.|+.+.+-.+|+.+|++..++++....|-|.
T Consensus 40 Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 40 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp EECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEEC
Confidence 455678999999999999999999999999999988888883
No 68
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=58.79 E-value=14 Score=32.72 Aligned_cols=42 Identities=7% Similarity=0.113 Sum_probs=37.9
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
++...|++..+.|+.+.+-.+|+.+|++..+++++...|-|.
T Consensus 14 vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 14 AKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp EEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 456678999999999999999999999999999999999883
No 69
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=58.63 E-value=15 Score=31.20 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=34.3
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 26 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 26 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
..+| +..+.|+.+.+-.+|+.+|++..|++++...|-|.
T Consensus 22 ~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 22 FPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp CSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEET
T ss_pred cCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 3456 77899999999999999999999999999888873
No 70
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.61 E-value=4.3 Score=32.12 Aligned_cols=17 Identities=35% Similarity=0.725 Sum_probs=9.6
Q ss_pred eCCCCCCCCcCcCCCCC
Q 003242 819 TCTKCKGIGHNKLSCKE 835 (837)
Q Consensus 819 ~Cs~C~~~GHNk~tC~~ 835 (837)
.|-+|++.||-.+.||.
T Consensus 31 ~C~~Cg~~GH~ar~Cp~ 47 (63)
T 2cqf_A 31 KCHFCQSISHMVASCPL 47 (63)
T ss_dssp CCTTTCCSSSCTTTCTG
T ss_pred ccCCcCCcCCccCcCCC
Confidence 45555555555555553
No 71
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=58.52 E-value=11 Score=32.85 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=35.7
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 26 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 26 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
..+|++..+.|+.+.+..+|+.+|++..|+..+...|-|
T Consensus 30 ~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 68 (106)
T 1ttn_A 30 LSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF 68 (106)
T ss_dssp ETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred cCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE
Confidence 347899999999999999999999999999998888888
No 72
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=57.38 E-value=5.7 Score=32.53 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=14.3
Q ss_pred eEeCCCCCCCCcCcCCCCC
Q 003242 817 TVTCTKCKGIGHNKLSCKE 835 (837)
Q Consensus 817 ~~~Cs~C~~~GHNk~tC~~ 835 (837)
...|-+|++.||-.+.||.
T Consensus 46 ~~~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 46 PKKCHFCQSISHMVASCPL 64 (74)
T ss_dssp CCCCTTTCCTTSCGGGCTT
T ss_pred CCccCCcCCcCCccCcCcC
Confidence 4577788888888888875
No 73
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=56.86 E-value=9.8 Score=33.26 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=37.5
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
++..+|++..+.|+.+.+-.+|+.+|.+..|+..+...|-|.
T Consensus 6 Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 6 FKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp EECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEET
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEEC
Confidence 455678999999999999999999999999999888888884
No 74
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=56.80 E-value=18 Score=29.98 Aligned_cols=39 Identities=10% Similarity=0.245 Sum_probs=34.0
Q ss_pred ecC-ceEEE-EeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 27 DGG-EANAV-AINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 27 ~gg-~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
..| ++..+ .|+.+.+-.+|+.+|++..+++++...|-|.
T Consensus 15 ~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 15 IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEET
T ss_pred CCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEEC
Confidence 345 67788 5999999999999999999999998888883
No 75
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=55.93 E-value=4.5 Score=31.72 Aligned_cols=19 Identities=37% Similarity=1.017 Sum_probs=17.2
Q ss_pred EeCCCCCCCCcCcCCCCCC
Q 003242 818 VTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 818 ~~Cs~C~~~GHNk~tC~~~ 836 (837)
..|-+|++.||-.+.||+.
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~ 49 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRKR 49 (61)
T ss_dssp SBCTTTCCBSSCGGGCCCC
T ss_pred CeeCCCCCCCCCcCCCcCC
Confidence 5799999999999999974
No 76
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=55.90 E-value=20 Score=29.43 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=35.6
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHH---hCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAEL---LNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~y~ 65 (837)
++..+|++..+.|+.+.+-.+|+.+|++. .++..+...|-|.
T Consensus 10 vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 10 LKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp EEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred EEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEEC
Confidence 34556888889999999999999999998 5788888888883
No 77
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=55.41 E-value=3.9 Score=32.09 Aligned_cols=20 Identities=25% Similarity=0.617 Sum_probs=17.5
Q ss_pred eEeCCCCCCCCcCcCCCCCC
Q 003242 817 TVTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 817 ~~~Cs~C~~~GHNk~tC~~~ 836 (837)
...|-+|++.||-.+.||..
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~ 23 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKK 23 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTT
T ss_pred CCcccccCCCCeehhhCcCC
Confidence 34799999999999999974
No 78
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=53.20 E-value=15 Score=30.85 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=34.2
Q ss_pred eEeecCceEEE-EeCCCCChHHHHHHHHHHhCCCCcceEEE
Q 003242 24 LSYDGGEANAV-AINPETHFGDLKLKLAELLNLEYKSLSVK 63 (837)
Q Consensus 24 ~~y~gg~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (837)
+++ +|++.-| .|+.+.+..+|+.+|.+..|+.++...|-
T Consensus 12 Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 12 VKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp EEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred EEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEE
Confidence 444 7788888 99999999999999999999988887776
No 79
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=52.42 E-value=22 Score=28.50 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=34.9
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 27 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 27 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
..|+.--+.|.++.+++.++.+.|+..|++.+++.|.|
T Consensus 9 ~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 46 (72)
T 1wm3_A 9 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 46 (72)
T ss_dssp TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 45778889999999999999999999999999999988
No 80
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=50.74 E-value=9.9 Score=23.89 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=10.3
Q ss_pred CCCCCCCCCCccccc
Q 003242 794 PSSTRTPTTHQKRRR 808 (837)
Q Consensus 794 P~~~r~~GRPKk~R~ 808 (837)
|...|++||||-...
T Consensus 2 ptpKrpRgRpkGSKN 16 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKN 16 (26)
T ss_dssp CSCCCCSSCCTTCCC
T ss_pred CCCcCCCCCcCcccc
Confidence 344788999976543
No 81
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.03 E-value=16 Score=31.22 Aligned_cols=37 Identities=22% Similarity=0.155 Sum_probs=33.1
Q ss_pred cCceE-EEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 28 GGEAN-AVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 28 gg~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
+|++. -|.|+.+.+..+|+.+|.+..|+..+...|-|
T Consensus 15 ~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~ 52 (96)
T 1wgg_A 15 GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV 52 (96)
T ss_dssp TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE
T ss_pred CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 67888 59999999999999999999999888777776
No 82
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=49.44 E-value=45 Score=30.45 Aligned_cols=42 Identities=10% Similarity=0.202 Sum_probs=37.2
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
++...|++..+.|+.+.+..+|+.+|++..+++++...|-|.
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEEC
Confidence 345578899999999999999999999999999998888883
No 83
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=49.35 E-value=25 Score=29.68 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=36.3
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+.-..|++..+.|+.+.+-.+|+.+|++..+++++...|-|.
T Consensus 22 I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 22 LFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp EEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEET
T ss_pred EEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEEC
Confidence 333347888999999999999999999999999998888884
No 84
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.00 E-value=25 Score=31.37 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=35.7
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+|+...|.|+.+.+..||+.++++.++++.+...|-|.
T Consensus 25 ~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 25 VGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp TCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEET
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEEC
Confidence 78889999999999999999999999999999999995
No 85
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=48.97 E-value=18 Score=31.14 Aligned_cols=38 Identities=8% Similarity=0.197 Sum_probs=34.1
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
.|++..+.|+.+.+..+|+.+|.+..++..+...|-|.
T Consensus 20 ~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 20 TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp CCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEET
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 35788899999999999999999999999998888773
No 86
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.97 E-value=5.6 Score=31.40 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=17.4
Q ss_pred ceEeCCCCCCCCcCcCCCCC
Q 003242 816 RTVTCTKCKGIGHNKLSCKE 835 (837)
Q Consensus 816 r~~~Cs~C~~~GHNk~tC~~ 835 (837)
+...|-+|++.||-.+.||.
T Consensus 6 r~~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 6 SGDRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp SCCCCSSSCCSSSCTTTCCS
T ss_pred CCCcccccCCCCcChhhCCC
Confidence 44689999999999999984
No 87
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=48.92 E-value=29 Score=29.86 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=33.4
Q ss_pred CceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 29 GEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 29 g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
|++..+.|+.+.+-.+|+.+|++..|++.+...|-|
T Consensus 34 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~ 69 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF 69 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE
Confidence 677889999999999999999999999999888887
No 88
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=48.89 E-value=24 Score=30.54 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=34.2
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+..+|. ..+.|+.+.+-.+|+.+|.+..++..+...|-|.
T Consensus 23 k~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 23 KTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp ECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEET
T ss_pred EeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 345565 4789999999999999999999999999888883
No 89
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=48.83 E-value=22 Score=31.37 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=35.6
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 27 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 27 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
.+|++..+.|+.+.+-.+|+.+|.+..|+.++...|-|
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~ 80 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY 80 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 47899999999999999999999999999999999988
No 90
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=48.25 E-value=29 Score=28.40 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=34.7
Q ss_pred EeecC-ceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 25 SYDGG-EANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 25 ~y~gg-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
.-..| +.--+.|.++..++.|+.+.|+..|++.+++.|.|
T Consensus 13 ~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f 53 (79)
T 3a4r_A 13 QGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF 53 (79)
T ss_dssp ECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE
T ss_pred EeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE
Confidence 33456 36789999999999999999999999999888888
No 91
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=47.25 E-value=31 Score=31.01 Aligned_cols=37 Identities=11% Similarity=0.191 Sum_probs=34.0
Q ss_pred CceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 29 GEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 29 g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
|++..+.|+.+.+-.+|+.+|++..++..+...|-|.
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEET
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEEC
Confidence 7778899999999999999999999999999999884
No 92
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=46.93 E-value=8.1 Score=36.17 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=15.4
Q ss_pred eEeCCCCCCCCcCcCCCCCC
Q 003242 817 TVTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 817 ~~~Cs~C~~~GHNk~tC~~~ 836 (837)
...|-+|++.||-.+.||+.
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTT
T ss_pred CCcccccCCcCCEeccCcCC
Confidence 45788888888888888863
No 93
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=46.67 E-value=25 Score=30.23 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=32.0
Q ss_pred eEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 31 ANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 31 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+--+.|+.+++-.+|+.||.+..|++++...|-|.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~ 62 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSMALELY 62 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 45588999999999999999999999999999885
No 94
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.46 E-value=27 Score=29.11 Aligned_cols=40 Identities=8% Similarity=0.199 Sum_probs=35.1
Q ss_pred CeEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEE
Q 003242 23 SLSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSV 62 (837)
Q Consensus 23 ~~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (837)
.+.|.+-+.-++.|++.+..+|++--||++|++++..+.|
T Consensus 14 vVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~L 53 (91)
T 2daj_A 14 VINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLL 53 (91)
T ss_dssp EEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEE
T ss_pred EEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEE
Confidence 3568888999999999999999999999999999875544
No 95
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=46.43 E-value=23 Score=29.67 Aligned_cols=38 Identities=3% Similarity=-0.037 Sum_probs=33.2
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
|++.-=+.++.+++-.+|+.||.+..|++++.+.|-|.
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~ 50 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLI 50 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEE
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEe
Confidence 44444578999999999999999999999999999985
No 96
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=46.36 E-value=11 Score=32.74 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=34.4
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
+|++..+.|+.+.+-.+|+.+|++..|++.+...|-|
T Consensus 36 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 72 (101)
T 3m63_B 36 GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY 72 (101)
T ss_dssp SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE
Confidence 8888899999999999999999999999988888877
No 97
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.97 E-value=12 Score=32.04 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=33.2
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
+|++.-|.|+.+.+..+|+.+|.+..++.++...|-|
T Consensus 25 ~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~ 61 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY 61 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE
Confidence 6788889999999999999999999999988777765
No 98
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=45.78 E-value=7.8 Score=31.73 Aligned_cols=20 Identities=30% Similarity=0.760 Sum_probs=17.7
Q ss_pred ceEeCCCCCCCCcCcCCCCC
Q 003242 816 RTVTCTKCKGIGHNKLSCKE 835 (837)
Q Consensus 816 r~~~Cs~C~~~GHNk~tC~~ 835 (837)
+...|-+|++.||-.+.|+.
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSS
T ss_pred CCCcccccCCcCcCcccCCC
Confidence 44689999999999999995
No 99
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.20 E-value=24 Score=30.56 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=38.1
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+.-.+|++..|.|+.+.+-.+|+.+|++..|++++...|.|.
T Consensus 33 VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~ 74 (100)
T 1uh6_A 33 CNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKW 74 (100)
T ss_dssp EECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEET
T ss_pred EECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 455678999999999999999999999999999999999886
No 100
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.90 E-value=34 Score=28.91 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=34.4
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHH---hCCCCcceEEEE
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAEL---LNLEYKSLSVKY 64 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~y 64 (837)
+..+|++..+.|+.+.+-.+|+.+|++. .|++.+...|-|
T Consensus 6 k~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~ 48 (95)
T 1uel_A 6 KTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY 48 (95)
T ss_dssp EETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE
T ss_pred EeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE
Confidence 3456788889999999999999999999 578888888877
No 101
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=43.94 E-value=41 Score=30.02 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=31.3
Q ss_pred eEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 31 ANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 31 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
..-+.|+.+++-.+|+.||.+..|++++...|-|.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~ 53 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLF 53 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEE
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEe
Confidence 45578999999999999999999999999888873
No 102
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=43.85 E-value=31 Score=32.68 Aligned_cols=42 Identities=10% Similarity=0.202 Sum_probs=37.9
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
++..+|++..+.|+.+.+-.+|+.+|.+..|+.++...|-|.
T Consensus 25 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~ 66 (172)
T 3u30_A 25 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 66 (172)
T ss_dssp EEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEEC
Confidence 455689999999999999999999999999999988888884
No 103
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=43.72 E-value=30 Score=29.75 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=34.5
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+..+|. ..+.|+.+.+-.+|+.+|++..+++.+...|-|.
T Consensus 28 k~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 28 KTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp ECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred EcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEEC
Confidence 445675 4789999999999999999999999998888883
No 104
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=43.46 E-value=8.7 Score=31.84 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=31.4
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecC
Q 003242 26 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLP 67 (837)
Q Consensus 26 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~ 67 (837)
-..|-.| |.|+.+.++.+|..+|.+.++++.....+++.-|
T Consensus 11 s~~G~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~ 51 (80)
T 2pjh_A 11 SPDGVKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYINRN 51 (80)
T ss_dssp CSSEEEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCC
T ss_pred CCCCCEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCC
Confidence 3446444 5699999999999999999998877666655544
No 105
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=43.39 E-value=33 Score=29.08 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=47.1
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEEeccCC
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSG 104 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~~~~~~ 104 (837)
.|+.--+.|.++.+++.|+.+.++..|++.+++.|.|- -+.|-.=.+.+||. | ++-..++|++-...|
T Consensus 14 ~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~Fd----G~~l~~~~Tp~dl~--m---edgD~Idv~~~q~gg 81 (91)
T 2io0_B 14 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD----GQPINETDTPAQLE--M---EDEDTIDVFQQQTGG 81 (91)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEET----TEECCTTCCTTTTT--C---CTTEEEEEEECCCCC
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEEC----CEEcCCCCCHHHcC--C---CCCCEEEEEEeccCC
Confidence 46677889999999999999999999999999988882 13332223444443 1 123357777655443
No 106
>3l3u_A POL polyprotein; DNA integration, AIDS, integrase, endonuclease, polynucleotidyl transferase, DNA binding, viral protein; 1.40A {Human immunodeficiency virus 1} PDB: 3ao1_A 3l3v_A* 3ovn_A* 3ao2_A* 3ao3_A* 3ao4_A* 3ao5_A* 2itg_A 1biz_A 1biu_A 1b9d_A 4dmn_A* 2b4j_A 1itg_A 1b92_A 1bl3_A 1bi4_A 1bis_A 1b9f_A 1bi4_B ...
Probab=43.06 E-value=66 Score=29.40 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=46.8
Q ss_pred CCeEEeecccccccccceEEEEEEecCCCCeEEEEEEEeccCChhHHHHHHHHHHHhhcCCCcEEEEecCchhHH
Q 003242 459 RPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLM 533 (837)
Q Consensus 459 ~~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~E~~es~~wfL~~lk~~~~~~~p~~iisD~~~~l~ 533 (837)
..++.+|.|+..++ +.++.+|...+.. +++.+ .+++.+....+|..+....+ +.+|.||+.....
T Consensus 9 ~~~w~~D~t~~~g~-----y~~~~iD~~sr~~-~~~~~-~~~~~~~~~~~l~~~~~~~~---~~~i~sD~G~~f~ 73 (163)
T 3l3u_A 9 PGIWQLDCTHLEGK-----VILVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSNFT 73 (163)
T ss_dssp TTEEEEEEEEETTE-----EEEEEEETTTCCE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEEECCCGGGG
T ss_pred CCEEEEEecccCCc-----EEEEEEecCCCcE-EEEEe-CCCcHHHHHHHHHHHHHHcC---CcEEeecChHhhh
Confidence 35899999998653 4667778766644 66655 56687777777777666655 3789999988764
No 107
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=49.03 E-value=5.1 Score=32.34 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=34.7
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
+..+|++..+.|+.+.+-.+|+.+|++..|++++...|-|
T Consensus 6 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~ 45 (76)
T 3b1l_X 6 RFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF 45 (76)
Confidence 4457888889999999999999999999999888777766
No 108
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=42.74 E-value=34 Score=29.97 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=34.7
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
.|++.-+.|.++..++-|+.+.|+..|++.+++.|.|
T Consensus 39 ~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F 75 (106)
T 2eke_C 39 GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY 75 (106)
T ss_dssp SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE
Confidence 5888899999999999999999999999999988888
No 109
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=42.28 E-value=25 Score=29.71 Aligned_cols=37 Identities=8% Similarity=0.214 Sum_probs=33.4
Q ss_pred CceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 29 GEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 29 g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
|++..+.|+.+.+-.+|+.+|++..++..+...|-|.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEET
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEEC
Confidence 7778899999999999999999999999888888773
No 110
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=41.87 E-value=34 Score=31.25 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=36.1
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+..+|++.-+.|+.+.+..+|+.+|++..+++++...|-|.
T Consensus 6 k~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~ 46 (152)
T 3b08_A 6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46 (152)
T ss_dssp EETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEET
T ss_pred EeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEEC
Confidence 34467888899999999999999999999999988888883
No 111
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=41.02 E-value=48 Score=30.77 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=36.5
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEE-E
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVK-Y 64 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-y 64 (837)
++..+|.+..+.|+.+.+-.+|+.+|.+..|+++....|- |
T Consensus 7 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~ 48 (159)
T 3rt3_B 7 VKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVH 48 (159)
T ss_dssp EEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred EEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEc
Confidence 3456789999999999999999999999999999888887 6
No 112
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=40.53 E-value=30 Score=29.93 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=34.4
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
||.+.-+.|+.+.+=.+|+.+|++..|++++...|-|.
T Consensus 28 ~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 28 KDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp CSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEET
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeC
Confidence 47888999999999999999999999999888888774
No 113
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A
Probab=40.24 E-value=93 Score=30.14 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=46.3
Q ss_pred CeEEeecccccccccceEEEEEEecCCCCeEEEEEEEeccCChhHHHHHHHHHHHhhcCCCcEEEEecCchhHHHH
Q 003242 460 PLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLMES 535 (837)
Q Consensus 460 ~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~E~~es~~wfL~~lk~~~~~~~p~~iisD~~~~l~~A 535 (837)
.++.+|-|+..++ +.++.+|..-+.. +++. +.+++.+...-+|..+....| |.+|.||+.......
T Consensus 61 ~~w~~D~t~~~~~-----y~~~~iD~~Sr~~-~~~~-~~~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~ 126 (219)
T 3hph_A 61 DHWQVDYTHYEDK-----IILVWVETNSGLI-YAER-VKGETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAE 126 (219)
T ss_dssp CEEEEEEEEETTE-----EEEEEEETTTCCE-EEEE-ESCCCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSH
T ss_pred ceEEEEEecCCCE-----EEEEEEeCCCCcE-EEEE-eCCCCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhH
Confidence 5788998876543 5567778766655 5555 456677777667766666665 889999999887543
No 114
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=39.99 E-value=10 Score=35.41 Aligned_cols=19 Identities=32% Similarity=0.753 Sum_probs=17.5
Q ss_pred eEeCCCCCCCCcCcCCCCC
Q 003242 817 TVTCTKCKGIGHNKLSCKE 835 (837)
Q Consensus 817 ~~~Cs~C~~~GHNk~tC~~ 835 (837)
..+|-+|++.||-.+.||.
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~ 115 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKL 115 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCS
T ss_pred CCcccEeCCccchhhhCCC
Confidence 5689999999999999987
No 115
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=39.82 E-value=39 Score=28.64 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=34.1
Q ss_pred ecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 27 DGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 27 ~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
..|+.--+.|.++..++.|+.+.++..|++.+++.|.|
T Consensus 25 ~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f 62 (93)
T 2d07_B 25 QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62 (93)
T ss_dssp TTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred CCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE
Confidence 34667779999999999999999999999999888888
No 116
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=39.51 E-value=39 Score=28.76 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=46.1
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEEeccC
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTS 103 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~~~~~ 103 (837)
.|++--+.|.++.+++.++.+.++..+++.+.+.|.|. -+.|-.=.+.+||. || +-..++|++--..
T Consensus 16 ~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~Fd----G~~l~~~~Tp~dl~--me---dgD~Idv~~~~~G 82 (94)
T 2io1_B 16 DGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFD----GQPINETDTPAQLE--ME---DEDTIDVFQQQTG 82 (94)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEET----TEECCTTCCTTTTT--CC---TTCEEEEEECCEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEEC----CEEcCCCCCHHHcC--CC---CCCEEEEEEeccC
Confidence 46777889999999999999999999999999988882 13332223344442 12 2235777765543
No 117
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=38.43 E-value=62 Score=30.50 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=36.6
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+-.+|++..+.|+.+.+-.+|+.+|.+..|+.++...|.|.
T Consensus 102 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 142 (172)
T 3u30_A 102 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142 (172)
T ss_dssp EESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEET
T ss_pred ecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEEC
Confidence 34678999999999999999999999999999988888873
No 118
>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A
Probab=37.56 E-value=1.1e+02 Score=27.87 Aligned_cols=71 Identities=10% Similarity=-0.066 Sum_probs=49.7
Q ss_pred CCeEEeecccccccccceEEEEEEecCCCCeEEEEEEEeccCChhHHHHHHHHHHHhhcCCCcEEEEecCchhHHH
Q 003242 459 RPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLME 534 (837)
Q Consensus 459 ~~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~E~~es~~wfL~~lk~~~~~~~p~~iisD~~~~l~~ 534 (837)
..++.+|-|+.... +|..+.++.+|...+ +.+++.+- +.+.+.-..+|+.+....+ .|..|.||+.....+
T Consensus 11 ~~~~~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 81 (162)
T 1cxq_A 11 LQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTS 81 (162)
T ss_dssp CCEEEEEEEECGGG-TTSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHS
T ss_pred CCEEEeeeeecccC-CCCEEEEEEEEcCCC-eEEEEECC-CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhh
Confidence 45789999987643 344566677886654 45667665 6777777777777666655 367999999988754
No 119
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=37.43 E-value=42 Score=31.17 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=36.5
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
+..+|++..+.|+.+.+-.+|+.+|.+..|++++...|-|
T Consensus 87 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 126 (159)
T 3rt3_B 87 RNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF 126 (159)
T ss_dssp ECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE
Confidence 3457899999999999999999999999999999888888
No 120
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=37.38 E-value=7 Score=30.39 Aligned_cols=19 Identities=37% Similarity=0.723 Sum_probs=0.0
Q ss_pred EeCCCCCCCCcCcCCCCCC
Q 003242 818 VTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 818 ~~Cs~C~~~GHNk~tC~~~ 836 (837)
..|=+|++.||-.+.||..
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~ 20 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEH 20 (60)
T ss_dssp -------------------
T ss_pred CccccCCCCCcCHhhCcCC
Confidence 3699999999999999864
No 121
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=37.34 E-value=33 Score=30.01 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=34.7
Q ss_pred cCceEEEEeCC-CCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 28 GGEANAVAINP-ETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 28 gg~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+|++.-+.|+. +.+-.+|+.+|.+..+++.+...|-|.
T Consensus 39 ~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 39 DGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp SSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECS
T ss_pred CCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEEC
Confidence 68888899998 999999999999999999998888883
No 122
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=36.49 E-value=47 Score=28.04 Aligned_cols=35 Identities=9% Similarity=0.180 Sum_probs=31.1
Q ss_pred eEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 31 ANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 31 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
..-+.|+.+++-.+|+.||.+..|++++...|-|.
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~ 54 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPASCMELELY 54 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEe
Confidence 45578999999999999999999999998888774
No 123
>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A
Probab=36.06 E-value=1e+02 Score=30.53 Aligned_cols=71 Identities=10% Similarity=-0.061 Sum_probs=51.4
Q ss_pred CCeEEeecccccccccceEEEEEEecCCCCeEEEEEEEeccCChhHHHHHHHHHHHhhcCCCcEEEEecCchhHHH
Q 003242 459 RPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLME 534 (837)
Q Consensus 459 ~~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~E~~es~~wfL~~lk~~~~~~~p~~iisD~~~~l~~ 534 (837)
..++.+|.|+.... ++..+.++.+|...+ +.+++.+- +++.+.-..+|+.+....+ .|.+|.||+.....+
T Consensus 10 ~~~w~~D~~~~~~~-~g~~yl~~~iD~~Sr-~i~~~~~~-~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s 80 (238)
T 1c0m_A 10 LQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQHG-RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFTS 80 (238)
T ss_dssp TSEEEEEEEECGGG-CSSCEEEEEEETTTC-CEEEEEES-SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHHS
T ss_pred CCEEEEeecccccc-CCCEEEEEEEECCCC-CEEEEEcc-CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCcccc
Confidence 35789999987653 334556667776554 55677765 8888888888887777766 377999999988754
No 124
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=35.71 E-value=50 Score=31.36 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=37.3
Q ss_pred eEeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 24 LSYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 24 ~~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
++...|++..+.|+.+.+-.+|+.+|.+..+++++...|-|.
T Consensus 5 Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 5 VKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp EEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEET
T ss_pred EEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEEC
Confidence 345678999999999999999999999999999998888873
No 125
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=35.31 E-value=14 Score=30.93 Aligned_cols=20 Identities=45% Similarity=0.871 Sum_probs=18.0
Q ss_pred eEeCCCCCCCCcCcCCCCCC
Q 003242 817 TVTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 817 ~~~Cs~C~~~GHNk~tC~~~ 836 (837)
.+.|-+|++.||-.+.||..
T Consensus 46 ~~~CYnCG~~GH~~rdC~~~ 65 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKEK 65 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSSC
T ss_pred CCeecccCCCCcCcccCCcc
Confidence 46899999999999999974
No 126
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=33.53 E-value=46 Score=29.27 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=51.8
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEEeccCC
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIGTSG 104 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~~~~~~ 104 (837)
.-..|+.-.+.|.++.+++.|+.+.|+..+++.+++.|.| +-+.|-.=.+.+||. |+ +-..++|++-...|
T Consensus 32 k~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF----dG~~L~~~~Tp~dl~--mE---DgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 32 VNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF----DGTPIDETKTPEELG--ME---DDDVIDAMVEQTGG 102 (110)
T ss_dssp EETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES----SSCBCCSSSHHHHHH--CS---SEEEEEEECCCCCC
T ss_pred ECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE----CCEEcCCCCCHHHcC--CC---CCCEEEEEEcccCc
Confidence 3446788889999999999999999999999999888877 224444334555553 22 23468888777665
Q ss_pred Cc
Q 003242 105 FD 106 (837)
Q Consensus 105 ~~ 106 (837)
..
T Consensus 103 ~~ 104 (110)
T 2k8h_A 103 LE 104 (110)
T ss_dssp --
T ss_pred cc
Confidence 53
No 127
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=33.04 E-value=29 Score=30.78 Aligned_cols=27 Identities=41% Similarity=0.684 Sum_probs=18.0
Q ss_pred CCCCCCCCCCcccccccCCCccceEeCCCCCC
Q 003242 794 PSSTRTPTTHQKRRRKILGIEHRTVTCTKCKG 825 (837)
Q Consensus 794 P~~~r~~GRPKk~R~~~~~~~kr~~~Cs~C~~ 825 (837)
|..+|-.||-|+-|- .-+.++|.+|+.
T Consensus 2 ~kKRrN~GR~KkgrG-----hv~~V~C~nCgr 28 (119)
T 2xzm_5 2 PVKRRNAGRSQKNRG-----HTRTVPCTNCGR 28 (119)
T ss_dssp CCCCSSTTCCCCSSS-----CCCEEECTTTCC
T ss_pred CcccccCCCCCCCCC-----CCccEeeCCccc
Confidence 455666777776542 135789999986
No 128
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.49 E-value=40 Score=29.33 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=34.8
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 26 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 26 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
-..|+.--+.|.++..++.|+.+.|+..+++.+.+.|.|
T Consensus 31 ~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F 69 (104)
T 1wz0_A 31 GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 69 (104)
T ss_dssp CSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES
T ss_pred CCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE
Confidence 345778889999999999999999999999998888877
No 129
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=32.36 E-value=30 Score=21.56 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=17.0
Q ss_pred CCCceeCCHHHHHHHHHHH
Q 003242 271 GVGQEFKSVIEFRDALQRF 289 (837)
Q Consensus 271 ~vG~~F~s~ee~~~ai~~y 289 (837)
..|.+|.+.+|++++|..|
T Consensus 7 ykgrtfrnekelrdfiekf 25 (28)
T 1fme_A 7 YKGRTFRNEKELRDFIEKF 25 (28)
T ss_dssp SSSCEECCHHHHHHHHHHC
T ss_pred hcccccccHHHHHHHHHHh
Confidence 5799999999999999765
No 130
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.70 E-value=65 Score=26.87 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=31.8
Q ss_pred cCc--eEEEEeCCCCChHHHHHHHHHHh--CCCCcceEEEEe
Q 003242 28 GGE--ANAVAINPETHFGDLKLKLAELL--NLEYKSLSVKYF 65 (837)
Q Consensus 28 gg~--~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~ 65 (837)
+|. +--|.|+.+.+-.+|+.+|++.. ++..+...|-|.
T Consensus 16 ~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 16 NQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp SSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred CCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 454 55667779999999999999999 998888888883
No 131
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens} PDB: 3k9k_A 3k9j_A
Probab=31.01 E-value=1.2e+02 Score=29.93 Aligned_cols=91 Identities=8% Similarity=0.154 Sum_probs=52.9
Q ss_pred ccccccceEEEEEEecCCCCeEEEEEEEec---cCChhHHHHHHHHHHHhh-------cCCCcEEEEecCchh-----HH
Q 003242 469 LRSKYHEILLTATALDGDDCIFPVAFAIVD---TENDDSWNWFLEELRSAV-------SSSRSITFVSDKQKG-----LM 533 (837)
Q Consensus 469 ~~~~y~~~Ll~a~g~D~~~~~~plafalv~---~E~~es~~wfL~~lk~~~-------~~~~p~~iisD~~~~-----l~ 533 (837)
.++++++.+++..+.+++|.+ ++.+++ .-|.+.|.-+|+.+...+ ......+|+-|..+. +.
T Consensus 65 ~~~~~~~~vmv~~~~s~~G~~---~~~~l~~~~tinse~Y~~~l~~l~~~l~~~~~~~~~~~~~i~~~Dna~~H~~~~~~ 141 (226)
T 3f2k_A 65 KPILHPKKVMVTIWWSAAGLI---HYSFLNPGETITSEKYAQEIDEMNQKLQRLQLALVNRKGPILLHDNARPHVAQPTL 141 (226)
T ss_dssp ----CCCEEEEEEEEETTEEE---EEEECCTTCCCSHHHHHHHHHHHHHHHHHHTC----CCCCEEECCCCHHHHSTTHH
T ss_pred ccccCCcceEEEEEeecCCcE---EEEEecCCcccCHHHHHHHHHHHHHHHhhhhhHhhccCCcEEEeCCCccchhhhHH
Confidence 356677888999999988865 345553 567889998888765443 123467888998653 33
Q ss_pred HHHHHhc-------ccCceeecHH-HHHHHHHhhcCC
Q 003242 534 ESVLKIF-------ENAHHGYSIY-HLLDNFMKNLKG 562 (837)
Q Consensus 534 ~AI~~vf-------P~a~h~~C~~-Hi~~N~~~~~~~ 562 (837)
..+.+.. |.+.-..-+- |+.+.++..+.+
T Consensus 142 ~~l~~~~~~~~~~P~ySPdlnpie~~~w~~lk~~l~~ 178 (226)
T 3f2k_A 142 QKLNELGYEVLPHPPYSPDLLPTNYHVFKHLNNFLQG 178 (226)
T ss_dssp HHHHHHTCEECCCCTTCGGGCHHHHTHHHHHHHHHTT
T ss_pred HHHHhhcceeecCCCCCCCcchHHHHHHHHHHHHHHh
Confidence 3333321 2333333333 666666665544
No 132
>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A
Probab=31.01 E-value=1e+02 Score=32.23 Aligned_cols=72 Identities=13% Similarity=-0.086 Sum_probs=50.4
Q ss_pred CCeEEeecccccccc---cc---eEEEEEEecCCCCeEEEEEEEeccCChhHHHHHHHHHHHhhcCCCcE--EEEecCch
Q 003242 459 RPLLFLDSTSLRSKY---HE---ILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSI--TFVSDKQK 530 (837)
Q Consensus 459 ~~vl~iD~T~~~~~y---~~---~Ll~a~g~D~~~~~~plafalv~~E~~es~~wfL~~lk~~~~~~~p~--~iisD~~~ 530 (837)
..++.+|+|++.... .| .....+.+|.... .++|+.+...|+.+...-.|.......+ .|. +|.+|+..
T Consensus 16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR-~ivg~~~~~~~~~~~v~~aL~~a~~~~G--~P~~~~i~sDnG~ 92 (327)
T 1bco_A 16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTR-KILGWRCDVSENIDSIRLSFMDVVTRYG--IPEDFHITIDNTR 92 (327)
T ss_dssp TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTC-CEEEEEEESSCCHHHHHHHHHHHHHHHC--EESSCEEECCCTT
T ss_pred CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCC-cEEEEEEECCCCHHHHHHHHHHHHHhcC--CCCCcEEEeeCch
Confidence 458999999765421 12 3445666776554 4589999999988888877777666654 455 99999987
Q ss_pred hHH
Q 003242 531 GLM 533 (837)
Q Consensus 531 ~l~ 533 (837)
+..
T Consensus 93 ~f~ 95 (327)
T 1bco_A 93 GAA 95 (327)
T ss_dssp STT
T ss_pred hhc
Confidence 653
No 133
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=30.88 E-value=20 Score=32.14 Aligned_cols=19 Identities=42% Similarity=0.786 Sum_probs=17.1
Q ss_pred EeCCCCCCCCcCcCCCCCC
Q 003242 818 VTCTKCKGIGHNKLSCKET 836 (837)
Q Consensus 818 ~~Cs~C~~~GHNk~tC~~~ 836 (837)
..|-+|++.||..+.||..
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCS
T ss_pred ccCCCCCcCCcchhhCCCc
Confidence 5799999999999999974
No 134
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.74 E-value=57 Score=28.20 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=35.4
Q ss_pred CeEeecC---ceEEEEeCC---------CCChHHHHHHHHHHh--CCCCcc-eEEEEe
Q 003242 23 SLSYDGG---EANAVAINP---------ETHFGDLKLKLAELL--NLEYKS-LSVKYF 65 (837)
Q Consensus 23 ~~~y~gg---~~~~~~v~~---------~~~~~~~~~~~~~~~--~~~~~~-~~~~y~ 65 (837)
.++..+| ++..|.|+. +.+-.+|+.+|.+.. ++..+. ..|-|.
T Consensus 16 ~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 16 AVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp EEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred EEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 3556688 788889555 599999999999999 999888 888773
No 135
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=30.43 E-value=46 Score=29.72 Aligned_cols=20 Identities=45% Similarity=0.880 Sum_probs=18.2
Q ss_pred ceEeCCCCCCCCcCcCCCCC
Q 003242 816 RTVTCTKCKGIGHNKLSCKE 835 (837)
Q Consensus 816 r~~~Cs~C~~~GHNk~tC~~ 835 (837)
....|-+|++.||..+.||.
T Consensus 104 ~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 104 HTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCCTTTTSSSCTTTTTSCC
T ss_pred CCCCcCCCCCCCcCcccCcC
Confidence 45799999999999999996
No 136
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=28.96 E-value=37 Score=30.10 Aligned_cols=27 Identities=22% Similarity=0.521 Sum_probs=17.9
Q ss_pred CCCCCCCCCCcccccccCCCccceEeCCCCCC
Q 003242 794 PSSTRTPTTHQKRRRKILGIEHRTVTCTKCKG 825 (837)
Q Consensus 794 P~~~r~~GRPKk~R~~~~~~~kr~~~Cs~C~~ 825 (837)
|.++|-.||-|+-|- .-..++|.+|+.
T Consensus 2 ~kKRrN~GR~KkgrG-----hv~~V~C~nCgr 28 (119)
T 3u5c_a 2 PKKRASNGRNKKGRG-----HVKPVRCVNCSK 28 (119)
T ss_dssp CCCCSSTTSCCCSCS-----CCCEEECTTTCC
T ss_pred CcccccCCCCCCCCC-----CCccEeeccccc
Confidence 455667777776542 135789999985
No 137
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=27.74 E-value=79 Score=28.03 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=33.5
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
.|..--+.|.++..++-|+...|+..|++.+++.|.|
T Consensus 49 dg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF 85 (115)
T 3kyd_D 49 DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF 85 (115)
T ss_dssp TSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE
T ss_pred CCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE
Confidence 4666678999999999999999999999999998888
No 138
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=27.15 E-value=1.8e+02 Score=27.19 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=41.7
Q ss_pred CCCeEEeecccccccccceEEEEEEecCCCCeEEEEEEEeccCChhHHHHHHHHHHHhhcCCCcEEEEecCchhHHH
Q 003242 458 CRPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLME 534 (837)
Q Consensus 458 ~~~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~E~~es~~wfL~~lk~~~~~~~p~~iisD~~~~l~~ 534 (837)
-..++.+|.++..++| + ++.+|..-+.. +++.+ .+++......++..+....+ +.+|.+|+.....+
T Consensus 28 p~~~w~~D~~~~~g~~---~--l~~vD~~Sr~~-~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~i~sDnG~ef~s 94 (183)
T 3av9_A 28 SPGIWQLDCTHLEGKV---I--LVAVHVASGYI-EAEVI-PAETGQETAYFLLKLAGRWP---VKTVHTDNGSNFTS 94 (183)
T ss_dssp CTTEEEEEEEEETTEE---E--EEEEETTTTEE-EEEEE-SSCCHHHHHHHHHHHHHHSC---CCEEECSSHHHHHC
T ss_pred CCCEEEEeccccCCcE---E--EEEEECCCCCE-EEEEe-CCccchHHHHHHHHHHHHcC---CcEEEecCchhcch
Confidence 3468899999884432 3 34447655544 66654 45566655555555554443 48999999887653
No 139
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=26.88 E-value=99 Score=29.04 Aligned_cols=62 Identities=13% Similarity=0.282 Sum_probs=44.9
Q ss_pred eEEeecccccccccceEEEEEEecCCCCeEEEEEEEeccCChhHHHHHHHHHHHhhcC-CCcEEEEecCchhHHHHHHHh
Q 003242 461 LLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSS-SRSITFVSDKQKGLMESVLKI 539 (837)
Q Consensus 461 vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~E~~es~~wfL~~lk~~~~~-~~p~~iisD~~~~l~~AI~~v 539 (837)
|+|-|+...++.|+- |-+-. +..+.|.-+-|.+...... .-|-.|+.|+.+|-.+|+.+|
T Consensus 38 VVf~~g~p~K~~YRr------------------f~I~~-~g~DDya~M~Evl~RR~~r~~~PDLilIDGGkgQl~aA~~v 98 (159)
T 2nrr_A 38 VVFEDGFPKKGDYRR------------------YKIEQ-DHPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEA 98 (159)
T ss_dssp EEEETTEECGGGCEE------------------EEC------CHHHHHHHHHHHHHTTSCCCSEEEESSCHHHHHHHHHH
T ss_pred EEEeCCccChhhCce------------------eecCC-CCCCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHH
Confidence 788899999988875 22222 2247787777777777543 458899999999999999888
Q ss_pred cc
Q 003242 540 FE 541 (837)
Q Consensus 540 fP 541 (837)
+-
T Consensus 99 l~ 100 (159)
T 2nrr_A 99 LK 100 (159)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 140
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=26.67 E-value=1e+02 Score=26.44 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=41.2
Q ss_pred ecC-ceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHH
Q 003242 27 DGG-EANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLK 83 (837)
Q Consensus 27 ~gg-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~ 83 (837)
..| +.-.+.|.|+..|+-|+..-|+..+++.+++.|.| +-+.|-.=.+.+||.
T Consensus 33 ~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F----DG~rI~~~~TP~dLd 86 (97)
T 2jxx_A 33 KEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF----DGTKLSGRELPADLG 86 (97)
T ss_dssp SSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE----TTEECCSCSCHHHHT
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE----CCEEcCCCCCHHHcC
Confidence 345 45679999999999999999999999999888888 225555555666663
No 141
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=26.30 E-value=35 Score=29.64 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=28.7
Q ss_pred cCceEEEEeC-CCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 28 GGEANAVAIN-PETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 28 gg~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
.|.. .|.|+ .++++.+|+.||.+.+++.++...|.|
T Consensus 16 ~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~ 52 (107)
T 1wf9_A 16 DGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST 52 (107)
T ss_dssp SCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS
T ss_pred CCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE
Confidence 4544 46899 999999999999999998877655543
No 142
>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A
Probab=26.07 E-value=1.8e+02 Score=27.39 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=46.3
Q ss_pred CCeEEeec-ccccccccceEEEEEEecCCCCeEEEEEEEeccCChhHHHHHHHHHHHhhcCCCcEEEEecCchhHHH
Q 003242 459 RPLLFLDS-TSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGLME 534 (837)
Q Consensus 459 ~~vl~iD~-T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~E~~es~~wfL~~lk~~~~~~~p~~iisD~~~~l~~ 534 (837)
..++.+|- ++.... +|..+.++.+|..-+. .+++.+ .+.+.+...-+|+. ++....|..|.||+.....+
T Consensus 13 ~~~~~~D~~~~~~~~-~g~~y~~~~iD~~Sr~-~~~~~~-~~~~~~~~~~~l~~---~~~~g~p~~i~sDnG~~f~s 83 (200)
T 2x78_A 13 FDKFFIDYIGPLPPS-QGYLYVLVVVDGMTGF-TWLYPT-KAPSTSATVKSLNV---LTSIAIPRVIHSDQGAAFTS 83 (200)
T ss_dssp TSEEEEEEECCCSCB-TTBCEEEEEEETTTCC-EEEEEE-SSSCHHHHHHHHHH---HTTTCCCSEEEECSCHHHHS
T ss_pred ccEEEEEEeCCCccC-CCCeEEEEEEeCCCCc-EEEEEC-CCCCHHHHHHHHHH---HHHhCCCcEEEecCCcceeh
Confidence 35788887 555433 5567777888876554 456666 67777666555543 33335688999999987654
No 143
>2bw3_A Transposase; DNA recombination, transposition; 2.0A {Musca domestica} SCOP: a.270.1.1 c.55.3.12 PDB: 2bw3_B
Probab=26.01 E-value=2.5e+02 Score=31.24 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=48.3
Q ss_pred eEEEEEEEec--cCChhHHHHHHHHHHHhhcCCC--cEEEEecCchhHHHHHHHhcccCceeecHHHHHHHHHhh
Q 003242 489 IFPVAFAIVD--TENDDSWNWFLEELRSAVSSSR--SITFVSDKQKGLMESVLKIFENAHHGYSIYHLLDNFMKN 559 (837)
Q Consensus 489 ~~plafalv~--~E~~es~~wfL~~lk~~~~~~~--p~~iisD~~~~l~~AI~~vfP~a~h~~C~~Hi~~N~~~~ 559 (837)
..+++|.-+. +.+.++..-.+..+.+..+... -+.++||....+..|++. ..|..|.-|++.-+.+.
T Consensus 131 ~~~L~~~~~~~~~~t~~~i~~~i~~~l~~~~l~~~~~v~~vtDnasn~~~~~~~----~~~i~C~~H~lnLi~~~ 201 (534)
T 2bw3_A 131 DLILGLKSLDFERSTAENIYKKLKAIFSQFNVEDLSSIKFVTDRGANVVKSLAN----NIRINCSSHLLSNVLEN 201 (534)
T ss_dssp EEEEEEEEECGGGCSHHHHHHHHHHHHHTTTCCCCTTCEEEECCCHHHHHHTTT----SEEEECHHHHHHHHHHH
T ss_pred EEEEeEeecCCCCCCHHHHHHHHHHHHHHcCCCcccceeEECCCHHHHHHHHhc----CcccccHHHHHHHHHHH
Confidence 3467776666 3566777666666666655443 677999999998888765 35899999998877654
No 144
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.51 E-value=63 Score=27.08 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=29.9
Q ss_pred eecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 26 YDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 26 y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
..+|.+..+.|+.+.+-.+|+.+|.+.. .+...|-|
T Consensus 14 ~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~ 49 (95)
T 1wia_A 14 FLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY 49 (95)
T ss_dssp ETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE
T ss_pred eCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE
Confidence 3467788899999999999999999887 55667777
No 145
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=24.91 E-value=66 Score=29.15 Aligned_cols=37 Identities=3% Similarity=0.110 Sum_probs=30.9
Q ss_pred ceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEec
Q 003242 30 EANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFL 66 (837)
Q Consensus 30 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l 66 (837)
..+.+-|.+.++|.+|++.+++.+|++.+.+.|=+-.
T Consensus 56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~ 92 (130)
T 2kvr_A 56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ 92 (130)
T ss_dssp SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECC
T ss_pred CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEee
Confidence 3567899999999999999999999888776665543
No 146
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=24.50 E-value=16 Score=33.07 Aligned_cols=40 Identities=8% Similarity=0.156 Sum_probs=0.0
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
+..+|++..+.|+.+.|-.+|+.+|.+..+++++...|-|
T Consensus 6 k~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~ 45 (128)
T 3u5e_m 6 KTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF 45 (128)
T ss_dssp ----------------------------------------
T ss_pred EeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE
Confidence 4457889999999999999999999999999888777766
No 147
>1c6v_A Protein (SIV integrase); DNA integration, DNA binding protein; 3.00A {Simian immunodeficiency virus} SCOP: c.55.3.2
Probab=24.11 E-value=1.7e+02 Score=26.24 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=40.7
Q ss_pred CCeEEeecccccccccceEEEEEEecCCCCeEEEEEEEeccCChhHHHHHHHHHHHhhcCCCcEEEEecCchhH
Q 003242 459 RPLLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSSSRSITFVSDKQKGL 532 (837)
Q Consensus 459 ~~vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~E~~es~~wfL~~lk~~~~~~~p~~iisD~~~~l 532 (837)
..++.+|.++. ++. +.++.+|..-+ +.+++. +.+.+.+.+.-++..+.... .|.+|.+|+....
T Consensus 9 ~~~w~~D~~~~----~g~-~~l~~iD~~Sr-~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~i~sDnG~~f 72 (164)
T 1c6v_A 9 LGTWQMDCTHL----EGK-IVIVAVHVASG-FIEAEV-IPQETGRQTALFLLKLAGRW---PITHLHTDNGANF 72 (164)
T ss_dssp TTEEEEEEEEE----TTE-EEEEEECTTSC-CEEEEE-CSSCSHHHHHHHHHHHHTTS---CCCEEECCCCSST
T ss_pred CCEEEEeeccc----CCE-EEEEEEEccCC-EEEEEE-cCCCchHHHHHHHHHHHHhc---CCCEEEeCCchhh
Confidence 34788999988 233 33444886655 445664 44567766666665554444 3789999997754
No 148
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=23.85 E-value=63 Score=25.97 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecC
Q 003242 42 FGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICN 78 (837)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~ 78 (837)
|.-.+..|.++|| -|||||.||++++
T Consensus 30 FQ~~Mq~lieKYn-----------~PFeD~plV~M~T 55 (81)
T 3r45_C 30 FQRRMQRLIEKYN-----------QPFEDTPVVQMAT 55 (81)
T ss_dssp HHHHHHHHHHHHC-----------SCCTTSCEEBTTT
T ss_pred HHHHHHHHHHHcC-----------CCCCCCceeeeee
Confidence 4555556666555 7999999998875
No 149
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.56 E-value=72 Score=27.48 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=33.9
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCC
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPG 68 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~ 68 (837)
+|++..|.|+.+.+-.+|+.+|.+..|+.+..-.|-| +|+
T Consensus 17 ~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~-~~~ 56 (100)
T 2dzm_A 17 RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKG-WKT 56 (100)
T ss_dssp SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEEC-CSS
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEc-cCC
Confidence 5778889999999999999999999999988777744 443
No 150
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=23.23 E-value=1.4e+02 Score=29.58 Aligned_cols=62 Identities=13% Similarity=0.282 Sum_probs=47.2
Q ss_pred eEEeecccccccccceEEEEEEecCCCCeEEEEEEEeccCChhHHHHHHHHHHHhhcC-CCcEEEEecCchhHHHHHHHh
Q 003242 461 LLFLDSTSLRSKYHEILLTATALDGDDCIFPVAFAIVDTENDDSWNWFLEELRSAVSS-SRSITFVSDKQKGLMESVLKI 539 (837)
Q Consensus 461 vl~iD~T~~~~~y~~~Ll~a~g~D~~~~~~plafalv~~E~~es~~wfL~~lk~~~~~-~~p~~iisD~~~~l~~AI~~v 539 (837)
|+|-|+...++.|+- |-+-. +..+.|.-+-|.+...... .-|-.|+.|+.+|-.+|..+|
T Consensus 43 Vvf~~g~p~k~~YRr------------------f~i~~-~g~DDya~m~Evl~RR~~r~~~PDLiliDGGkgQl~~a~~v 103 (220)
T 2nrt_A 43 VVFEDGFPKKGDYRR------------------YKIEQ-DHPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEA 103 (220)
T ss_dssp EEEETTEECGGGCEE------------------EEEEC-SSCCHHHHHHHHHHHHHTTSCCCSEEEESSSHHHHHHHHHH
T ss_pred EEEeCCccChhhCce------------------eeCCC-CCCCHHHHHHHHHHHHhccCCCCCEEEEeCCHHHHHHHHHH
Confidence 788899999988875 22222 3347888877777777543 458999999999999999998
Q ss_pred cc
Q 003242 540 FE 541 (837)
Q Consensus 540 fP 541 (837)
+-
T Consensus 104 l~ 105 (220)
T 2nrt_A 104 LK 105 (220)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 151
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=22.94 E-value=25 Score=30.31 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=18.4
Q ss_pred ceEeCCCCCCCC---cCcCCCCCC
Q 003242 816 RTVTCTKCKGIG---HNKLSCKET 836 (837)
Q Consensus 816 r~~~Cs~C~~~G---HNk~tC~~~ 836 (837)
|.+.|..|+..| |..+=||..
T Consensus 70 R~Y~CpiCGATGd~AHT~kYCP~~ 93 (106)
T 3alr_A 70 RQYKCPLCGATGAKAHTKRFCPMV 93 (106)
T ss_dssp GGCCCTTTCCCGGGCCCGGGCTTC
T ss_pred ccccCCCCCCcCCcccceecCCCC
Confidence 578999999998 999999963
No 152
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=22.83 E-value=98 Score=26.17 Aligned_cols=75 Identities=11% Similarity=0.159 Sum_probs=40.4
Q ss_pred eEeec--CceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHHHhccCCceeEEEEEec
Q 003242 24 LSYDG--GEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRMFDFHEGSVTADVFVIG 101 (837)
Q Consensus 24 ~~y~g--g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m~~~~~~~~~~~v~~~~ 101 (837)
|+|+| |+||+|-+. ..|.+..++..++||+. +.-.+.-.+-.+ ..+.-+++|+ ++.+-.-.-...+-|+++.+
T Consensus 3 LrFIacnGQTRaVq~~--~~y~~~L~~ALkKF~le-dpskw~Vcvtqs-sr~~~it~e~-f~~icr~~srPEReRLIl~~ 77 (110)
T 1k8r_B 3 LRFIACNGQTRAVQSR--GDYQKTLAIALKKFSLE-DASKFIVCVSQS-SRIKLITEEE-FKQICFNSSSPERDRLIIVP 77 (110)
T ss_dssp EEEECSTTCEEEEECC--SCHHHHHHHHHHHHTCC-CTTSEEEEEECS-SSEEECCCC--------------CCCEEEEE
T ss_pred eEEeecCCceEEeeeh--hhHHHHHHHHHHHcCCC-ChhHeEEEEecC-ceEEEecHhH-HHHHHhCCCCcchheeEEec
Confidence 56665 899987765 56778889999999984 333344444444 6666666654 44444333334445555555
Q ss_pred cC
Q 003242 102 TS 103 (837)
Q Consensus 102 ~~ 103 (837)
..
T Consensus 78 K~ 79 (110)
T 1k8r_B 78 KE 79 (110)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 153
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=22.48 E-value=55 Score=28.61 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=24.6
Q ss_pred CCCCCCCceeCCHHHHHHHHHHHHHhcceEEEEEee
Q 003242 267 DSITGVGQEFKSVIEFRDALQRFSIAHRFRYKFKKN 302 (837)
Q Consensus 267 ~~~~~vG~~F~s~ee~~~ai~~yAi~~gf~~~~~ks 302 (837)
|+--.+...|+|+|++. .||.++|..|.+...
T Consensus 49 D~~~qv~L~F~skE~Ai----ayAek~G~~y~V~ep 80 (106)
T 2jya_A 49 DMKQQVKLTFETQEQAE----AYAQRKGIEYRVILP 80 (106)
T ss_dssp CSEEEEEEEESSHHHHH----HHHHHHTCEEEECCC
T ss_pred CccccceEecCCHHHHH----HHHHHcCCEEEEeCC
Confidence 33345789999998765 689999999988644
No 154
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=22.02 E-value=1.3e+02 Score=26.74 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=35.2
Q ss_pred eEeecCce-EEEEeCCCCChHHHHHHHHHHhCCCCcceEEEE
Q 003242 24 LSYDGGEA-NAVAINPETHFGDLKLKLAELLNLEYKSLSVKY 64 (837)
Q Consensus 24 ~~y~gg~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y 64 (837)
|+-.+|.+ ..+.|..+.+-.+|+.||.+..|+..+.-.|-|
T Consensus 5 l~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~ 46 (118)
T 2fnj_B 5 LMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYK 46 (118)
T ss_dssp EEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEE
Confidence 45567764 678999999999999999999999998888876
No 155
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=21.81 E-value=19 Score=35.02 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred EeecCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEe
Q 003242 25 SYDGGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYF 65 (837)
Q Consensus 25 ~y~gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 65 (837)
+...|++..|.|+.+.|-.+|+.+|.+..+++++...|-|.
T Consensus 6 KtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~ 46 (189)
T 2xzm_9 6 KTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNN 46 (189)
T ss_dssp -----------------------------------------
T ss_pred EcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEec
Confidence 34568999999999999999999999999999887777773
No 156
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=20.60 E-value=93 Score=26.73 Aligned_cols=57 Identities=16% Similarity=0.238 Sum_probs=36.3
Q ss_pred cCceEEEEeCCCCChHHHHHHHHHHhCCCCcceEEEEecCCCCCceEeecChHHHHHH
Q 003242 28 GGEANAVAINPETHFGDLKLKLAELLNLEYKSLSVKYFLPGNKQTLITICNDKDLKRM 85 (837)
Q Consensus 28 gg~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~~~~~l~~~~~d~dl~~m 85 (837)
|+..+-|.|+.+++.+||+..|++.-.+-...-++.+.+-+..+.|. +.....|+.|
T Consensus 3 g~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LY-mq~pp~Lee~ 59 (98)
T 1y8x_B 3 SQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLY-MQSVTSIEER 59 (98)
T ss_dssp --CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEE-CSSCHHHHHH
T ss_pred CCCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEE-EeCcHHHHHH
Confidence 66788899999999999999999943322333445554444445555 4445555544
No 157
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=20.12 E-value=1.3e+02 Score=25.63 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=28.9
Q ss_pred ecCc--eEEEEeCCCCChHHHHHHHHHHh-CCC-CcceEEEE
Q 003242 27 DGGE--ANAVAINPETHFGDLKLKLAELL-NLE-YKSLSVKY 64 (837)
Q Consensus 27 ~gg~--~~~~~v~~~~~~~~~~~~~~~~~-~~~-~~~~~~~y 64 (837)
.+|. +.-|.|+.+.+-.+|+.+|.+.+ +.. ++...|-|
T Consensus 31 ~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy 72 (99)
T 2kdb_A 31 PNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY 72 (99)
T ss_dssp TTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE
T ss_pred CCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE
Confidence 3455 56788899999999999999976 333 36667777
Done!