BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003243
         (837 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 528 DSVGWIYG-SVTEDVVTGYRMHDRGWRSVYCVTKRDAFHGTAPINLTDRLHQVLRWATGS 586
           D  G   G ++TED  T   +H RGW+S+Y    R    G  P      + Q  RWATG 
Sbjct: 330 DEAGGFAGETITEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGM 387

Query: 587 VEIFFSRNNALLGSSRLKLLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSG 638
           +++   +N   L    L + QR+ YLN   + F  +  +++   P + LF G
Sbjct: 388 MQMLLLKNP--LFRRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFG 437


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,005,776
Number of Sequences: 62578
Number of extensions: 1103602
Number of successful extensions: 2262
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2258
Number of HSP's gapped (non-prelim): 4
length of query: 837
length of database: 14,973,337
effective HSP length: 107
effective length of query: 730
effective length of database: 8,277,491
effective search space: 6042568430
effective search space used: 6042568430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)