Query 003248
Match_columns 836
No_of_seqs 270 out of 693
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 19:52:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1246 DNA-binding protein ju 100.0 1.1E-73 2.4E-78 689.3 26.3 538 11-576 69-622 (904)
2 KOG0958 DNA damage-responsive 100.0 2.2E-72 4.8E-77 635.4 16.0 309 29-418 12-321 (690)
3 PF02373 JmjC: JmjC domain, hy 100.0 1.2E-32 2.6E-37 252.3 10.0 114 272-388 1-114 (114)
4 smart00545 JmjN Small domain f 99.8 2.1E-19 4.6E-24 141.1 4.6 42 31-72 1-42 (42)
5 PF02375 JmjN: jmjN domain; I 99.6 4.9E-16 1.1E-20 116.9 2.6 34 33-66 1-34 (34)
6 PF02928 zf-C5HC2: C5HC2 zinc 99.5 3.1E-15 6.6E-20 123.7 4.2 54 495-548 1-54 (54)
7 smart00558 JmjC A domain famil 99.3 2.2E-12 4.7E-17 106.6 3.5 56 244-302 2-57 (57)
8 KOG1246 DNA-binding protein ju 98.3 4.2E-07 9.1E-12 112.1 3.7 176 242-425 604-788 (904)
9 smart00541 FYRN "FY-rich" doma 97.0 0.00016 3.6E-09 57.9 0.2 24 812-835 1-24 (44)
10 PF13621 Cupin_8: Cupin-like d 96.7 0.0021 4.6E-08 66.2 5.2 108 270-391 132-248 (251)
11 KOG2131 Uncharacterized conser 96.6 0.0042 9.2E-08 69.1 7.1 105 272-392 201-305 (427)
12 PF05964 FYRN: F/Y-rich N-term 95.6 0.0037 8E-08 52.1 0.5 30 805-834 3-33 (54)
13 KOG1356 Putative transcription 94.4 0.046 1E-06 66.4 5.0 113 303-416 740-859 (889)
14 KOG2130 Phosphatidylserine-spe 93.5 0.041 8.8E-07 60.6 2.1 131 255-395 166-303 (407)
15 PF08007 Cupin_4: Cupin superf 88.3 1.8 3.9E-05 48.1 8.5 105 268-397 113-218 (319)
16 smart00154 ZnF_AN1 AN1-like Zi 53.7 6.3 0.00014 31.0 0.9 33 495-529 1-35 (39)
17 COG2461 Uncharacterized conser 34.4 23 0.0005 40.8 1.9 43 30-74 198-240 (409)
18 COG1791 Uncharacterized conser 22.4 66 0.0014 33.5 2.5 44 347-395 110-160 (181)
No 1
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=1.1e-73 Score=689.34 Aligned_cols=538 Identities=42% Similarity=0.691 Sum_probs=440.2
Q ss_pred cccccccccCCcccCCCCCCCCCccCCCHHhhhCHHHHHHHHHHhhhhcCceeEcCCCCCCCCCCCcccccccccccccc
Q 003248 11 HIKEISARWDPAEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPCPLKAKNIWENAKFSTR 90 (836)
Q Consensus 11 ~~~~~~~~~~p~~~~r~~i~e~PVF~PT~EEF~DPl~YI~sI~~~aekyGIcKIVPP~~WkPp~~l~~k~i~~~~kF~tr 90 (836)
...++...+.+..+.+......+.+.+....|.|...|+..++..++.||+|.++||..|++++++..+..|....|.++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (904)
T KOG1246|consen 69 TLEVDFYSDLTELAKRVISNLKPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKEPLKGKQNWFSSGFDQR 148 (904)
T ss_pred ccccchhhhhhhhhhcccccccccccccCccccchhhccccccccccccccccccCCcccCCCCcCCcccccccCCCCCc
Confidence 34555666667777777888899999999999999999999999999999999999999999999999999999999999
Q ss_pred -chhhhcccccccccccch------h-hhhhhcccccccccccCC-----CCCccccccccccccccccCC-CCCHHHHH
Q 003248 91 -IQQIDLLQNREPMRKKIR------S-RKRKRRRQSRMGSTRRNA-----NSSSEANAAETDEKFGFQSGP-DLTLEGFQ 156 (836)
Q Consensus 91 -iQ~v~~Lq~r~p~~k~~~------~-~k~k~~~~~~~~~~~r~~-----~s~~~~~~~~~~e~fgF~~g~-~~tL~eF~ 156 (836)
+|.++..+.+...+.... + .+..+......+..+... ..+-........+.+||..|. +||+..|+
T Consensus 149 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~ 228 (904)
T KOG1246|consen 149 EVEFIDYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFE 228 (904)
T ss_pred ccccccchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhh
Confidence 888877665544433211 0 111111111111111100 000011123346889998876 99999999
Q ss_pred HHHHHHHHhhhCCCCCCCCCcCCccccccCCCCHHHHHHHhhhhccCCCCcceeeeCCCCCCCCCCCCCCCCCCCCCC-C
Q 003248 157 KYAQNFKECYFGMNDSKEDVKSDGFEHKRLEPSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTE-S 235 (836)
Q Consensus 157 ~~A~~fk~~~f~~~~~~~~~~~~~~~~~~~~ps~e~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFp~~~~~~~~-~ 235 (836)
++|+.|+..||....... ++.+++|++||++|...+..++|.||+|+.+..+|+|||........ .
T Consensus 229 ~~~~~~~~~~~~~~~~~~-------------~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~ 295 (904)
T KOG1246|consen 229 EYADNFKKDYFPKSKNSP-------------DSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGS 295 (904)
T ss_pred hHhhhhhccccccccCCC-------------CchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCc
Confidence 999999999998765432 33789999999999999899999999999999999999987654333 4
Q ss_pred chhhhhccCcccCCCCCCCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHH
Q 003248 236 DLDQYAMSGWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST 315 (836)
Q Consensus 236 ~~~~y~~~~WNLnnLp~~~gSLL~~~~~~I~GV~tP~LYiGM~fStf~WH~ED~~L~SINYlH~GapKiWY~VP~~~a~k 315 (836)
..++|..++|||+++|.+++|+|+|.+.+|+|+++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++
T Consensus 296 ~~~~y~~s~wnL~~i~~~~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~ 375 (904)
T KOG1246|consen 296 EAEKYSNSGWNLNNIPRLEGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEK 375 (904)
T ss_pred chhhhccCcccccccccCCccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHH
Confidence 66899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhhcChhhhhccccccChhhhhhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeeccccchhhh
Q 003248 316 LEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLA 395 (836)
Q Consensus 316 FE~l~k~~~p~~f~~~pd~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~ 395 (836)
||+++++..|+++..+|++++.+.++++|..|..+|||+++++|+|||||||||++||+|||+|||++|+|||||.+||+
T Consensus 376 ~e~~~~~~~p~~~~~~pd~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~ 455 (904)
T KOG1246|consen 376 FEKAMNKLSPGLFIEQPDLLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLP 455 (904)
T ss_pred HHHHHHhhCCcccccCcccccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHhhhhhc-ccCCCcchhhhhcccchhHHHHHHHHHHHHHhhcccC
Q 003248 396 HGQQAVELYSEQHRKTSLSHDKLLFGSVQAAIKALWELSVLQ-KKTPGNRKWKDACGKDGVLTKAIKTRVQMKKEGLQKL 474 (836)
Q Consensus 396 ~g~~a~e~y~~~~r~~~fs~d~LL~~~A~~~~~~l~~~~l~~-k~~~~~~~~~~~c~~~~il~~alk~r~~~e~~~~~~l 474 (836)
+|+.++++|+...+.++|||++|++.+|+..+...+.+.+.. +.......|...+...+.....+..+ |......+
T Consensus 456 ~gr~~~~~~~~~~~~~lfs~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 532 (904)
T KOG1246|consen 456 VGRGAAEAYSLLLRLSLFSHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKY---ERYLLESL 532 (904)
T ss_pred HHHHHHHHHHhhccCCccCHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHH---HHHHHHhc
Confidence 999999999999999999999999999998766544443322 11111122222222222222111111 11111111
Q ss_pred chhhhhhhhccccCCccccccccccchhhhccccccccCCccccccchhhhcCCCCCceEEEEEcCHHHHHHHHHHHHhc
Q 003248 475 PSYFKLQKMEIDFDLKTERECFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLVEALEGG 554 (836)
Q Consensus 475 ~~~~~~~k~~~~~d~~~er~C~~Ck~~cfLS~V~C~C~~~~v~CL~Ha~~lCsC~~~~~~LlyRYt~~EL~~lv~~le~~ 554 (836)
. |+..+++|..|+++||++.+.|+|.+.+..||.|..++|+|....++++|||++++|..++.+++.+
T Consensus 533 ---------~---~~~~~~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~ 600 (904)
T KOG1246|consen 533 ---------P---DDMLERQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQLH 600 (904)
T ss_pred ---------c---chhhHHHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhhh
Confidence 0 1223899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhccCCCCC
Q 003248 555 LDALKELASKNFKWADCSDTDG 576 (836)
Q Consensus 555 ~~~~~~W~~~~~~~l~~s~~~~ 576 (836)
...+..|..++.+++.......
T Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~ 622 (904)
T KOG1246|consen 601 ELSKLPWFGRVDGALPSLGFRG 622 (904)
T ss_pred hhhcchhhhhhhhhhcccccCC
Confidence 9999999999999987655543
No 2
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-72 Score=635.36 Aligned_cols=309 Identities=36% Similarity=0.683 Sum_probs=260.7
Q ss_pred CCCCCccCCCHHhhhCHHHHHHHHHHhhhh-cCceeEcCCCCCCCCCCCccccccccccccccchhhhcccccccccccc
Q 003248 29 IDEAPVFYPTVEEFEDTLGYIAKIRSKAES-FGICRIVPPSSWTPPCPLKAKNIWENAKFSTRIQQIDLLQNREPMRKKI 107 (836)
Q Consensus 29 i~e~PVF~PT~EEF~DPl~YI~sI~~~aek-yGIcKIVPP~~WkPp~~l~~k~i~~~~kF~triQ~v~~Lq~r~p~~k~~ 107 (836)
..++||||||||||+||.+||+.|+.+|.+ +||+|||||++|+|+...+ +| +++++++.||++-.-|.+..
T Consensus 12 s~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~~~--di-~di~I~~PiqQ~v~g~~G~F----- 83 (690)
T KOG0958|consen 12 SDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLMYD--DI-DDIKIPAPIQQVVTGQGGLF----- 83 (690)
T ss_pred CCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccccC--ch-hheecChhHHHHhhccCceE-----
Confidence 678999999999999999999999999755 9999999999999987654 22 56788888888753332211
Q ss_pred hhhhhhhcccccccccccCCCCCccccccccccccccccCCCCCHHHHHHHHHHHHHhhhCCCCCCCCCcCCccccccCC
Q 003248 108 RSRKRKRRRQSRMGSTRRNANSSSEANAAETDEKFGFQSGPDLTLEGFQKYAQNFKECYFGMNDSKEDVKSDGFEHKRLE 187 (836)
Q Consensus 108 ~~~k~k~~~~~~~~~~~r~~~s~~~~~~~~~~e~fgF~~g~~~tL~eF~~~A~~fk~~~f~~~~~~~~~~~~~~~~~~~~ 187 (836)
++|+.+..+.|++.+|+++|+. .+| ..+. ..
T Consensus 84 --------------------------------~~~Ni~~~kam~v~q~r~lAns--~~y-~tpr--------------~~ 114 (690)
T KOG0958|consen 84 --------------------------------TQYNIQDKKAMTVRQFRDLANS--DKY-CTPR--------------GS 114 (690)
T ss_pred --------------------------------EEeehhhccccChhhhhhhhhh--ccc-CCCc--------------cc
Confidence 2334455578999999999997 222 2111 02
Q ss_pred CCHHHHHHHhhhhccCCCCcceeeeCCCCCCCCCCCCCCCCCCCCCCCchhhhhccCcccCCCCCCCCCcccccCCCCCC
Q 003248 188 PSVVDIEGEYWRIIERPTDEVEVYYGADLETGAFASGFPKASSLGTESDLDQYAMSGWNLNNLPRLPGSVLAFEGSDISG 267 (836)
Q Consensus 188 ps~e~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFp~~~~~~~~~~~~~y~~~~WNLnnLp~~~gSLL~~~~~~I~G 267 (836)
-..+|+|+.||+.|.. ..+.||||+.+++|. |....||+++|+...+- ...+..|.|
T Consensus 115 ~d~~dle~kYWKnltf----~~PiYGaD~~gSi~~-----------------~~~~~WNi~~L~tild~--~~~~~~i~g 171 (690)
T KOG0958|consen 115 QDFEDLEQKYWKNLTF----DSPIYGADINGSIYD-----------------EDLDEWNIARLDTILDL--EECGIIIEG 171 (690)
T ss_pred ccHHHHHHHHHhcccC----CCCcccccCCCccCc-----------------ccccccccccccchhch--hhcceeecc
Confidence 3468999999999985 468999999866542 23568999999864221 478889999
Q ss_pred cccceEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHHhcchhhhcChhhhhccccccChhhh
Q 003248 268 VLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVL 347 (836)
Q Consensus 268 V~tP~LYiGM~fStf~WH~ED~~L~SINYlH~GapKiWY~VP~~~a~kFE~l~k~~~p~~f~~~pd~L~h~~~~isP~~L 347 (836)
||||+||+|||.++|+||+||++||||||+|||+||+||+||+++.++||+++.+.+|+...+|++||+|++++++|.+|
T Consensus 172 vNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~~C~aFLRHK~~LiSP~~L 251 (690)
T KOG0958|consen 172 VNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQGCPAFLRHKMTLISPSVL 251 (690)
T ss_pred cCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCccccCCHHHHhhcccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeeccccchhhhHHHHHHHHHHhccCCCCCcHHHH
Q 003248 348 KAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHDKL 418 (836)
Q Consensus 348 ~~~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~fs~d~L 418 (836)
+++|||+++++|++||||||||++||+|||+||||+|++|||++.|+++|+.|..+-+. ...--||++.+
T Consensus 252 kqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~a~~C~C~-~d~vkism~~f 321 (690)
T KOG0958|consen 252 KQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQALLCSCR-SDSVKISMDPF 321 (690)
T ss_pred HHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhcccccccccc-cceeeeechhh
Confidence 99999999999999999999999999999999999999999999999999999886432 22223455544
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.98 E-value=1.2e-32 Score=252.32 Aligned_cols=114 Identities=46% Similarity=0.774 Sum_probs=101.2
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHHhcchhhhcChhhhhccccccChhhhhhCC
Q 003248 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEG 351 (836)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~L~SINYlH~GapKiWY~VP~~~a~kFE~l~k~~~p~~f~~~pd~L~h~~~~isP~~L~~~G 351 (836)
|||+||.||+++||+||+.++||||+|+|++|+||+||++++++|++++++. ...++++++.+...++.|+.|+++|
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~l~~~g 77 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSK---ESQNCPQFLDHKNIFVSPEQLKKAG 77 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHH---HHHHSTTGGCTGGEEEGHHHHHHTT
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhc---ccccccccccccccccceeeeeccC
Confidence 7999999999999999999999999999999999999999999999999987 3457888999999999999999999
Q ss_pred CCeeEeecCCCcEEEEcCCcceeeeecccceeeeecc
Q 003248 352 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNV 388 (836)
Q Consensus 352 Ipv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNF 388 (836)
||+++++|+|||+|||+||+||+++|.|+|++|||||
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 9999999999999999999999999999999999998
No 4
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.77 E-value=2.1e-19 Score=141.05 Aligned_cols=42 Identities=67% Similarity=1.376 Sum_probs=41.1
Q ss_pred CCCccCCCHHhhhCHHHHHHHHHHhhhhcCceeEcCCCCCCC
Q 003248 31 EAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTP 72 (836)
Q Consensus 31 e~PVF~PT~EEF~DPl~YI~sI~~~aekyGIcKIVPP~~WkP 72 (836)
++||||||+|||+||++||++|+++|++|||||||||.+|+|
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~p 42 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWKP 42 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCCc
Confidence 689999999999999999999999999999999999999997
No 5
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.59 E-value=4.9e-16 Score=116.89 Aligned_cols=34 Identities=59% Similarity=1.248 Sum_probs=27.8
Q ss_pred CccCCCHHhhhCHHHHHHHHHHhhhhcCceeEcC
Q 003248 33 PVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVP 66 (836)
Q Consensus 33 PVF~PT~EEF~DPl~YI~sI~~~aekyGIcKIVP 66 (836)
||||||+|||+||++||++|+++|++||||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEecC
Confidence 8999999999999999999999999999999998
No 6
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=99.55 E-value=3.1e-15 Score=123.68 Aligned_cols=54 Identities=41% Similarity=0.835 Sum_probs=52.2
Q ss_pred cccccchhhhccccccccCCccccccchhhhcCCCCCceEEEEEcCHHHHHHHH
Q 003248 495 CFSCFYDLHLSAAGCKCSPDRFACLKHANIFCSCEIDHRFVILRYSTDELNTLV 548 (836)
Q Consensus 495 C~~Ck~~cfLS~V~C~C~~~~v~CL~Ha~~lCsC~~~~~~LlyRYt~~EL~~lv 548 (836)
|.+||++||||+|.|+|.+++++||+|+.++|+|++++++|+|||+++||++|+
T Consensus 1 C~~Ck~~~yLS~v~C~C~~~~~~CL~H~~~~c~C~~~~~~L~yR~~~~eL~~lv 54 (54)
T PF02928_consen 1 CSICKAYCYLSAVTCSCKPDKVVCLRHAKELCSCPCSNHTLRYRYDDEELESLV 54 (54)
T ss_pred CcccCCchhhcccccCCCCCcEEccccchhhcCCCCCCeEEEEeCCHHHHHHhC
Confidence 899999999999999999999999999999999999999999999999999885
No 7
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=99.27 E-value=2.2e-12 Score=106.63 Aligned_cols=56 Identities=43% Similarity=0.590 Sum_probs=53.5
Q ss_pred CcccCCCCCCCCCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCc
Q 003248 244 GWNLNNLPRLPGSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDP 302 (836)
Q Consensus 244 ~WNLnnLp~~~gSLL~~~~~~I~GV~tP~LYiGM~fStf~WH~ED~~L~SINYlH~Gap 302 (836)
.|||+++|. .+++|++++.+++|+++||+|+||++|+|+||+|++++ +||+|.|+.
T Consensus 2 ~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 2 LNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred cchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 699999999 88999999999999999999999999999999999999 999999863
No 8
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.28 E-value=4.2e-07 Score=112.08 Aligned_cols=176 Identities=20% Similarity=0.154 Sum_probs=145.5
Q ss_pred ccCcccCCCCCC-----CC-CcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHH
Q 003248 242 MSGWNLNNLPRL-----PG-SVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHAST 315 (836)
Q Consensus 242 ~~~WNLnnLp~~-----~g-SLL~~~~~~I~GV~tP~LYiGM~fStf~WH~ED~~L~SINYlH~GapKiWY~VP~~~a~k 315 (836)
..+|...-.-.+ ++ ++|.+.+..+-||++..+|+...++.+.-|.|+..+.++|.++..+.+.|++||.++...
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~n~~~~~~k~~~~rt~~~~~n~~~~s~~~n~~p~~~~~~~v~~~~~~~ 683 (904)
T KOG1246|consen 604 KLPWFGRVDGALPSLGFRGANLLEHAGEKILGMNTVQCYMKVPGSRTTAHQENSALASININLGPGDCVWFAVPLEYWGV 683 (904)
T ss_pred cchhhhhhhhhhcccccCCcchHHHHHHHhhcccccceeeccccccchhHHHHHHHhhhhccCCcccceeeecccchhHH
Confidence 456765544333 35 889999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHhcchhhhcChhhhhcccccc-ChhhhhhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeeccccchhh
Q 003248 316 LEKAMRKHLPDLFEEQPDLLHELVTQL-SPSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWL 394 (836)
Q Consensus 316 FE~l~k~~~p~~f~~~pd~L~h~~~~i-sP~~L~~~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL 394 (836)
+++++.+.-- .++.. ..|. .-..|...+|++++++|++|++|.++.+.|||....||..+.++|.+....-
T Consensus 684 ~~~~~~~~~~-------~~~~~-~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~~~ 755 (904)
T KOG1246|consen 684 VEDACEKHNL-------KYSDS-SVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSESTFA 755 (904)
T ss_pred HHHHHhhccc-------cccch-hccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceecccccchh
Confidence 9999877421 11211 3444 5678999999999999999999999999999999999999999999998854
Q ss_pred h--HHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Q 003248 395 A--HGQQAVELYSEQHRKTSLSHDKLLFGSVQA 425 (836)
Q Consensus 395 ~--~g~~a~e~y~~~~r~~~fs~d~LL~~~A~~ 425 (836)
+ .....+.+..+......+++..+-|++|+.
T Consensus 756 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (904)
T KOG1246|consen 756 QLALALFRHDHNIESKHPSSVPMSFKVWEMAEK 788 (904)
T ss_pred hhhcchhhhhhhhhccCcccchhhhhhhhHhhc
Confidence 4 334444455456788899999999999986
No 9
>smart00541 FYRN "FY-rich" domain, N-terminal region. is sometimes closely juxtaposed with the C-terminal region (FYRC), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=97.03 E-value=0.00016 Score=57.95 Aligned_cols=24 Identities=42% Similarity=0.588 Sum_probs=21.1
Q ss_pred ceeeecccccccccccCCCcccCC
Q 003248 812 GCVMCGKLWCSKQAIFPKGYIRRM 835 (836)
Q Consensus 812 g~~~~~k~w~~~~~~~~kg~~~~~ 835 (836)
+.|+.++.|++++||||+||++++
T Consensus 1 ~~~~~~~~fh~~~~IyP~Gy~s~R 24 (44)
T smart00541 1 LLPIQGKLFHSEDAIFPVGYKSTR 24 (44)
T ss_pred CccccCCCcccCCEEecCCEEEEE
Confidence 357789999999999999999874
No 10
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.69 E-value=0.0021 Score=66.18 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=66.0
Q ss_pred cceEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHHhcchhhhc------ChhhhhccccccC
Q 003248 270 VPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEE------QPDLLHELVTQLS 343 (836)
Q Consensus 270 tP~LYiGM~fStf~WH~ED~~L~SINYlH~GapKiWY~VP~~~a~kFE~l~k~~~p~~f~~------~pd~L~h~~~~is 343 (836)
..+|+||..+|.+.+|.+. ...++-+..| .|.|+-+||.+...+ .+..... ..++. ....-..
T Consensus 132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G-~K~~~L~pP~~~~~l-------~~~~~~~~~~~~~~~d~~-~~d~~~~ 200 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRG-RKRWILFPPDDSPNL-------YPRPDSHGGTVFSWVDPD-NPDLERF 200 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S--SEEEEEEEES-EEEEEEE-GGGGGGC-------TBETTTST-TCBBSS-TT-S--TTT-
T ss_pred ccEEEEeCCCceeeeeECc--hhhhhhccCC-CEEEEEECCcccccc-------ccceecccccceeeeecc-Chhhhhh
Confidence 5579999999999999887 4466666777 599999999986533 1110000 00100 0000111
Q ss_pred hhhhhhCCCCeeEeecCCCcEEEEcCCcceeeeec---ccceeeeeccccc
Q 003248 344 PSVLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNC---GFNCAEAVNVAPV 391 (836)
Q Consensus 344 P~~L~~~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~---GfN~aEAVNFA~~ 391 (836)
|. +.+ ++.+.++++|||.+++-+|-+|.+.|. +++++..+.|-+.
T Consensus 201 p~-~~~--~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 201 PK-FRK--APPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp CG-GGG----EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred hh-hcc--CceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 22 222 389999999999999999999999999 4677777776553
No 11
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.61 E-value=0.0042 Score=69.13 Aligned_cols=105 Identities=22% Similarity=0.184 Sum_probs=78.3
Q ss_pred eEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHHhcchhhhcChhhhhccccccChhhhhhCC
Q 003248 272 WLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSVLKAEG 351 (836)
Q Consensus 272 ~LYiGM~fStf~WH~ED~~L~SINYlH~GapKiWY~VP~~~a~kFE~l~k~~~p~~f~~~pd~L~h~~~~isP~~L~~~G 351 (836)
-.|.|-.+|+++.|.+=..-+|---+..| -|.|..+||.+..++...... .| .-+.-..|....
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~s~swS~nicG-~KrWl~~pP~qe~~l~dr~gn--------lp-------~~~~~~~ld~~~ 264 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFHSPSWSVNICG-RKRWLLYPPEQEQTLADRYGN--------LP-------LPSWITKLDLFR 264 (427)
T ss_pred EEEeccCCCCCccchhhhcCCcceeeeec-ceeEEEeChHHhhhhhhhccC--------cC-------Cccccccccccc
Confidence 57899999999999766666666666677 688999999985554333211 11 112223577778
Q ss_pred CCeeEeecCCCcEEEEcCCcceeeeecccceeeeeccccch
Q 003248 352 VPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVD 392 (836)
Q Consensus 352 Ipv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~d 392 (836)
.|.+.+.|+|||.|++--|=||.+.|.|-.++..=|..-..
T Consensus 265 ~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~ 305 (427)
T KOG2131|consen 265 GPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNAT 305 (427)
T ss_pred cchhhhhccCCceeeccCccccccccccceeeecccccccc
Confidence 88899999999999999999999999999988776655443
No 12
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=95.64 E-value=0.0037 Score=52.13 Aligned_cols=30 Identities=20% Similarity=0.441 Sum_probs=20.5
Q ss_pred eeeeeccceeeecc-cccccccccCCCcccC
Q 003248 805 CVEPINFGCVMCGK-LWCSKQAIFPKGYIRR 834 (836)
Q Consensus 805 ~v~~~~~g~~~~~k-~w~~~~~~~~kg~~~~ 834 (836)
++..+++|.|+... .|+++++|||.||+++
T Consensus 3 sl~v~sLG~i~~~~~~fh~~~~IyP~Gy~s~ 33 (54)
T PF05964_consen 3 SLTVHSLGKIVPDRPAFHSERYIYPVGYKSS 33 (54)
T ss_dssp TEEEEEEEE---SSGGGB-SS-B--EEEEEE
T ss_pred ceEEEECeEEeCCCCCccCCCEEeeCCEEEE
Confidence 46778999999998 9999999999999986
No 13
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=94.38 E-value=0.046 Score=66.40 Aligned_cols=113 Identities=16% Similarity=0.175 Sum_probs=83.1
Q ss_pred eeEEEeCcccHHHHHHHHHHhcchhhhcCh---hhhhccccccCh----hhhhhCCCCeeEeecCCCcEEEEcCCcceee
Q 003248 303 KIWYGVPGSHASTLEKAMRKHLPDLFEEQP---DLLHELVTQLSP----SVLKAEGVPVYHVVQHSGEFVLTFPRAYHSG 375 (836)
Q Consensus 303 KiWY~VP~~~a~kFE~l~k~~~p~~f~~~p---d~L~h~~~~isP----~~L~~~GIpv~r~vQ~pGEfVVTfPgaYHsg 375 (836)
-.|=+....++.|++++++++-.+.-...+ +=+|...+.+.- ....+.||.-..++|..||.||+-.||-|.+
T Consensus 740 ALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQV 819 (889)
T KOG1356|consen 740 ALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQV 819 (889)
T ss_pred chhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHh
Confidence 479999999999999999998655321111 112333444443 2456789999999999999999999999999
Q ss_pred eecccceeeeeccccchhhhHHHHHHHHHHhccCCCCCcHH
Q 003248 376 FNCGFNCAEAVNVAPVDWLAHGQQAVELYSEQHRKTSLSHD 416 (836)
Q Consensus 376 fn~GfN~aEAVNFA~~dWL~~g~~a~e~y~~~~r~~~fs~d 416 (836)
.|.--++..|+.|..|.-+.....-.+-||.+- ...+.|+
T Consensus 820 rNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp-~~h~~~e 859 (889)
T KOG1356|consen 820 RNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLP-QNHKNHE 859 (889)
T ss_pred hhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCC-CcccchH
Confidence 999999999999999998876554444444321 1255553
No 14
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=93.50 E-value=0.041 Score=60.61 Aligned_cols=131 Identities=21% Similarity=0.227 Sum_probs=87.9
Q ss_pred CCcccccCCCCCCcccceEEeecccccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHHhcchhhhcChhh
Q 003248 255 GSVLAFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDL 334 (836)
Q Consensus 255 gSLL~~~~~~I~GV~tP~LYiGM~fStf~WH~ED~~L~SINYlH~GapKiWY~VP~~~a~kFE~l~k~~~p~~f~~~pd~ 334 (836)
..|+.+++..- -=---|+-+|-..|.+.||++...+-.-|-+..| -|.|.-+|+.--..+-+.. ++.-.+|++=
T Consensus 166 dDlF~y~g~e~-RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~G-hKrW~LfPp~~p~~lvkv~----~~e~g~~~de 239 (407)
T KOG2130|consen 166 DDLFQYLGEER-RPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQG-HKRWVLFPPGTPPELVKVT----VDEGGKQPDE 239 (407)
T ss_pred HHHHHhcCccc-CCCceeEEecCCCCCceeEECCcchHHHHHHhhc-cceeEEcCCCCCCCceeec----ccccCCCCcc
Confidence 45666665320 0113499999999999999999999999999988 6889999987532221111 1112234331
Q ss_pred hhccccccChh-------hhhhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeeccccchhhh
Q 003248 335 LHELVTQLSPS-------VLKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLA 395 (836)
Q Consensus 335 L~h~~~~isP~-------~L~~~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~ 395 (836)
. .+|++-. .+-.+ -.-..++|.|||-|++--|=.|.++|.-..+|..-|||...=++
T Consensus 240 ~---itwf~~~y~rt~~Pswp~E-~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 240 I---ITWFSTIYPRTQLPSWPDE-YKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred e---echhhhccccccCCCCccc-cCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 1 1111110 01112 22346889999999999999999999999999999999876544
No 15
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=88.28 E-value=1.8 Score=48.08 Aligned_cols=105 Identities=20% Similarity=0.209 Sum_probs=67.2
Q ss_pred cccceEEeeccc-ccccccccCccceeeeeeeeCCceeEEEeCcccHHHHHHHHHHhcchhhhcChhhhhccccccChhh
Q 003248 268 VLVPWLYVGMCF-SSFCWHVEDHHLYSLNYLHWGDPKIWYGVPGSHASTLEKAMRKHLPDLFEEQPDLLHELVTQLSPSV 346 (836)
Q Consensus 268 V~tP~LYiGM~f-Stf~WH~ED~~L~SINYlH~GapKiWY~VP~~~a~kFE~l~k~~~p~~f~~~pd~L~h~~~~isP~~ 346 (836)
-..-.+|++-.+ ..|++|.++++..-| -.-+.|.|..-++.. ....+..+ .+-.
T Consensus 113 ~~~~n~Y~tp~g~~g~~~H~D~~dvfvl---Q~~G~K~W~l~~~~~-----------------~~~~~~~~-----~~~~ 167 (319)
T PF08007_consen 113 PVGANAYLTPPGSQGFGPHYDDHDVFVL---QLEGRKRWRLYPPPD-----------------EPAPLYSD-----QPFK 167 (319)
T ss_dssp -EEEEEEEETSSBEESECEE-SSEEEEE---EEES-EEEEEE-SCC-----------------CTTTSSCE-------TT
T ss_pred ccceEEEecCCCCCCccCEECCcccEEE---ECCceeEEEECCCCc-----------------ccccccCC-----CCcc
Confidence 345578999888 589999999876654 345589999987211 00000000 0111
Q ss_pred hhhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeeccccchhhhHH
Q 003248 347 LKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLAHG 397 (836)
Q Consensus 347 L~~~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNFA~~dWL~~g 397 (836)
..+..-|+..++=+||+++++-+|.+|.+.+.|.++.-+++|-++.|..+-
T Consensus 168 ~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl~ 218 (319)
T PF08007_consen 168 QLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADLL 218 (319)
T ss_dssp TCG--STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHHH
T ss_pred ccccCceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhHH
Confidence 123336788999999999999999999999999999999999999998753
No 16
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=53.68 E-value=6.3 Score=31.04 Aligned_cols=33 Identities=24% Similarity=0.587 Sum_probs=25.9
Q ss_pred cccccchhhhcccccc-ccCCccccccchh-hhcCCC
Q 003248 495 CFSCFYDLHLSAAGCK-CSPDRFACLKHAN-IFCSCE 529 (836)
Q Consensus 495 C~~Ck~~cfLS~V~C~-C~~~~v~CL~Ha~-~lCsC~ 529 (836)
|.+|+...+|..+.|. |. .++|+.|-. +..+|+
T Consensus 1 C~~C~~~~~l~~f~C~~C~--~~FC~~HR~~e~H~C~ 35 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG--NLFCGEHRLPEDHDCP 35 (39)
T ss_pred CcccCCcccccCeECCccC--CccccccCCccccCCc
Confidence 7889999999889999 86 689999953 234454
No 17
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=34.43 E-value=23 Score=40.84 Aligned_cols=43 Identities=26% Similarity=0.641 Sum_probs=35.4
Q ss_pred CCCCccCCCHHhhhCHHHHHHHHHHhhhhcCceeEcCCCCCCCCC
Q 003248 30 DEAPVFYPTVEEFEDTLGYIAKIRSKAESFGICRIVPPSSWTPPC 74 (836)
Q Consensus 30 ~e~PVF~PT~EEF~DPl~YI~sI~~~aekyGIcKIVPP~~WkPp~ 74 (836)
.+.-+||||.-+--++-.| ..|+.+-..+|-+||+|| .|+|.-
T Consensus 198 kEe~Ilypt~~d~~te~ew-~~i~~~~~eigy~~i~p~-~w~p~~ 240 (409)
T COG2461 198 KEENILYPTLLDLLTEGEW-EAIKEQSKEIGYAKIKPP-KWKPKK 240 (409)
T ss_pred hhhhhHHhHHHHhcCHHHH-HHHHhcCcccceEEecCc-cccCcc
Confidence 4677899998887775554 568888999999999999 999964
No 18
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=22.39 E-value=66 Score=33.48 Aligned_cols=44 Identities=27% Similarity=0.555 Sum_probs=32.5
Q ss_pred hhhCCCCeeEeecCCCcEEEEcCCcceeeeecccceeeeecc-------ccchhhh
Q 003248 347 LKAEGVPVYHVVQHSGEFVLTFPRAYHSGFNCGFNCAEAVNV-------APVDWLA 395 (836)
Q Consensus 347 L~~~GIpv~r~vQ~pGEfVVTfPgaYHsgfn~GfN~aEAVNF-------A~~dWL~ 395 (836)
+....=+++.+.-.+|+++.+-||.||| |.+.++-|| +++.|.+
T Consensus 110 v~~~d~~~~~i~c~~gDLI~vP~gi~Hw-----Ftlt~~~~f~AvRlF~~~~gWVa 160 (181)
T COG1791 110 VHSPDGKVYQIRCEKGDLISVPPGIYHW-----FTLTESPNFKAVRLFTEPEGWVA 160 (181)
T ss_pred EECCCCcEEEEEEccCCEEecCCCceEE-----EEccCCCcEEEEEEeeCCCCcee
Confidence 3344458899999999999999999998 444455554 4666865
Done!