Query 003249
Match_columns 836
No_of_seqs 573 out of 2843
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 19:53:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.4E-48 7.4E-53 424.6 32.7 376 380-819 113-501 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 8.4E-45 1.8E-49 398.1 31.9 408 386-824 51-472 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 7.4E-33 1.6E-37 331.1 45.3 361 382-806 126-574 (615)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-31 4E-36 328.1 50.1 412 382-825 464-888 (899)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-30 5.4E-35 318.1 53.7 430 380-824 122-583 (899)
6 TIGR00990 3a0801s09 mitochondr 100.0 1.6E-30 3.4E-35 311.2 44.7 367 350-779 132-577 (615)
7 PRK11447 cellulose synthase su 100.0 7.8E-30 1.7E-34 324.4 51.0 446 348-823 29-686 (1157)
8 PRK11447 cellulose synthase su 100.0 6.6E-29 1.4E-33 315.9 57.1 440 363-823 164-726 (1157)
9 PRK15174 Vi polysaccharide exp 100.0 6.6E-28 1.4E-32 289.2 42.7 349 388-808 47-408 (656)
10 PRK15174 Vi polysaccharide exp 100.0 8.7E-28 1.9E-32 288.1 41.2 326 420-810 47-388 (656)
11 PRK09782 bacteriophage N4 rece 100.0 1.2E-25 2.5E-30 276.3 48.2 225 592-822 463-725 (987)
12 KOG0547 Translocase of outer m 100.0 6.2E-27 1.3E-31 253.4 30.7 360 380-805 112-568 (606)
13 PRK10049 pgaA outer membrane p 100.0 1.3E-25 2.9E-30 274.3 43.0 407 391-818 23-471 (765)
14 KOG0624 dsRNA-activated protei 100.0 3.2E-26 7E-31 238.3 29.5 318 448-811 44-378 (504)
15 PRK09782 bacteriophage N4 rece 99.9 4.2E-25 9.1E-30 271.4 40.6 370 382-823 375-759 (987)
16 KOG0547 Translocase of outer m 99.9 6.7E-25 1.5E-29 237.7 27.1 334 448-825 121-554 (606)
17 PRK10049 pgaA outer membrane p 99.9 1.7E-23 3.7E-28 255.7 42.2 372 382-783 48-466 (765)
18 KOG2002 TPR-containing nuclear 99.9 2.8E-21 6.2E-26 224.1 50.7 434 367-823 291-765 (1018)
19 PRK11788 tetratricopeptide rep 99.9 3.1E-22 6.7E-27 225.7 35.9 307 383-807 35-355 (389)
20 KOG0548 Molecular co-chaperone 99.9 1.9E-22 4.1E-27 222.3 29.6 350 459-811 16-463 (539)
21 KOG2002 TPR-containing nuclear 99.9 2.4E-20 5.2E-25 216.5 38.7 380 381-820 162-576 (1018)
22 KOG1126 DNA-binding cell divis 99.9 9.7E-22 2.1E-26 221.4 25.5 284 396-779 332-626 (638)
23 KOG1126 DNA-binding cell divis 99.9 7.5E-22 1.6E-26 222.3 24.6 282 430-809 334-626 (638)
24 KOG0548 Molecular co-chaperone 99.9 9E-21 1.9E-25 209.2 29.8 361 387-781 6-463 (539)
25 PRK11788 tetratricopeptide rep 99.9 1.2E-20 2.6E-25 212.8 31.7 249 462-809 52-317 (389)
26 PHA02713 hypothetical protein; 99.9 3.8E-22 8.2E-27 234.7 17.3 151 176-332 20-180 (557)
27 KOG4441 Proteins containing BT 99.9 7.5E-22 1.6E-26 231.6 18.8 155 176-334 31-193 (571)
28 PRK12370 invasion protein regu 99.9 4.9E-20 1.1E-24 217.7 32.1 246 462-808 278-540 (553)
29 PRK11189 lipoprotein NlpI; Pro 99.9 7.4E-20 1.6E-24 199.5 28.9 147 462-667 43-194 (296)
30 PHA02790 Kelch-like protein; P 99.9 1.1E-21 2.4E-26 227.5 13.1 155 176-334 17-178 (480)
31 PRK14574 hmsH outer membrane p 99.9 4.3E-18 9.2E-23 206.1 44.0 426 382-811 33-521 (822)
32 PRK11189 lipoprotein NlpI; Pro 99.9 5.7E-20 1.2E-24 200.4 24.9 123 492-672 39-166 (296)
33 PHA03098 kelch-like protein; P 99.8 1.4E-20 3E-25 221.8 19.0 150 177-334 5-164 (534)
34 KOG0550 Molecular chaperone (D 99.8 1.4E-20 3E-25 201.3 16.6 283 450-806 57-353 (486)
35 PRK12370 invasion protein regu 99.8 1.2E-18 2.6E-23 205.9 31.1 264 386-772 261-534 (553)
36 KOG1155 Anaphase-promoting com 99.8 1.3E-17 2.8E-22 180.8 35.6 312 383-772 164-494 (559)
37 KOG0624 dsRNA-activated protei 99.8 7.3E-18 1.6E-22 176.3 31.1 325 380-783 35-380 (504)
38 PRK14574 hmsH outer membrane p 99.8 5E-17 1.1E-21 196.9 41.9 384 413-825 32-501 (822)
39 PLN02789 farnesyltranstransfer 99.8 1.2E-18 2.7E-23 190.5 23.9 142 472-671 30-175 (320)
40 PLN02789 farnesyltranstransfer 99.8 4.2E-18 9E-23 186.4 27.3 197 462-756 54-267 (320)
41 KOG1173 Anaphase-promoting com 99.8 2.1E-17 4.5E-22 183.2 32.4 265 459-780 258-525 (611)
42 KOG4350 Uncharacterized conser 99.8 2.1E-19 4.6E-24 190.0 10.9 148 177-327 40-189 (620)
43 KOG2076 RNA polymerase III tra 99.8 1.3E-15 2.9E-20 176.6 39.2 130 384-543 140-272 (895)
44 TIGR00540 hemY_coli hemY prote 99.8 1.9E-15 4.2E-20 172.3 38.8 305 381-773 82-399 (409)
45 KOG0550 Molecular chaperone (D 99.8 3.4E-17 7.4E-22 175.5 21.6 290 377-752 43-362 (486)
46 PF13429 TPR_15: Tetratricopep 99.8 2.6E-18 5.7E-23 185.7 13.3 245 462-772 25-276 (280)
47 TIGR02521 type_IV_pilW type IV 99.8 2.1E-16 4.6E-21 162.3 26.3 194 479-770 31-229 (234)
48 KOG1155 Anaphase-promoting com 99.8 4.7E-16 1E-20 168.8 29.0 74 471-544 322-396 (559)
49 TIGR02521 type_IV_pilW type IV 99.8 3.1E-16 6.6E-21 161.1 26.5 184 462-741 48-232 (234)
50 KOG1125 TPR repeat-containing 99.7 7.7E-17 1.7E-21 179.6 20.9 220 461-741 301-527 (579)
51 PRK10747 putative protoheme IX 99.7 6.5E-15 1.4E-19 167.3 36.9 305 381-774 82-391 (398)
52 PF13429 TPR_15: Tetratricopep 99.7 3E-17 6.6E-22 177.4 13.5 159 388-547 13-181 (280)
53 KOG1173 Anaphase-promoting com 99.7 1.3E-15 2.8E-20 169.1 25.5 264 390-671 251-522 (611)
54 KOG1125 TPR repeat-containing 99.7 2.6E-16 5.5E-21 175.5 19.3 230 483-776 289-530 (579)
55 KOG1127 TPR repeat-containing 99.7 1.8E-14 3.9E-19 167.6 29.1 404 393-822 429-898 (1238)
56 TIGR00540 hemY_coli hemY prote 99.7 6.2E-14 1.3E-18 159.9 30.5 264 383-741 118-399 (409)
57 PRK15359 type III secretion sy 99.7 1.6E-15 3.4E-20 147.6 14.9 125 466-651 14-139 (144)
58 PLN03081 pentatricopeptide (PP 99.6 4.2E-13 9.2E-18 163.4 37.9 382 384-802 159-556 (697)
59 KOG4162 Predicted calmodulin-b 99.6 6.9E-13 1.5E-17 152.1 35.3 386 383-825 323-771 (799)
60 KOG2003 TPR repeat-containing 99.6 4E-14 8.8E-19 152.4 22.9 120 385-508 203-338 (840)
61 KOG4162 Predicted calmodulin-b 99.6 1.1E-12 2.5E-17 150.3 35.7 353 383-743 357-785 (799)
62 KOG2076 RNA polymerase III tra 99.6 2.7E-13 5.8E-18 157.7 30.9 334 461-820 155-531 (895)
63 KOG2075 Topoisomerase TOP1-int 99.6 2E-15 4.3E-20 164.6 12.5 147 173-322 106-257 (521)
64 COG3063 PilF Tfp pilus assembl 99.6 7E-14 1.5E-18 140.9 22.5 198 514-807 37-240 (250)
65 KOG1127 TPR repeat-containing 99.6 4.1E-13 9E-18 156.4 31.3 166 382-547 491-665 (1238)
66 KOG1129 TPR repeat-containing 99.6 1.4E-14 3.1E-19 151.1 17.6 230 387-671 227-462 (478)
67 cd05804 StaR_like StaR_like; a 99.6 7.4E-13 1.6E-17 147.6 32.9 304 382-775 5-338 (355)
68 KOG1840 Kinesin light chain [C 99.6 1.6E-13 3.5E-18 156.9 27.7 241 447-772 204-478 (508)
69 KOG2003 TPR repeat-containing 99.6 9.5E-13 2.1E-17 142.0 31.0 271 484-784 424-700 (840)
70 PRK15359 type III secretion sy 99.6 9.1E-15 2E-19 142.3 14.3 120 625-787 14-135 (144)
71 KOG1174 Anaphase-promoting com 99.6 3.4E-12 7.3E-17 137.2 33.9 190 588-784 318-511 (564)
72 TIGR03302 OM_YfiO outer membra 99.6 1E-13 2.2E-18 145.7 21.8 174 473-738 27-229 (235)
73 PLN03077 Protein ECB2; Provisi 99.6 6.6E-12 1.4E-16 156.5 41.6 396 385-822 255-705 (857)
74 cd05804 StaR_like StaR_like; a 99.6 7.6E-13 1.7E-17 147.5 29.9 213 474-743 1-217 (355)
75 COG3063 PilF Tfp pilus assembl 99.6 1.3E-13 2.8E-18 139.0 20.8 148 464-667 54-202 (250)
76 PLN03077 Protein ECB2; Provisi 99.6 7.8E-12 1.7E-16 155.9 40.9 386 383-806 323-727 (857)
77 PF00651 BTB: BTB/POZ domain; 99.6 3E-15 6.5E-20 138.3 7.7 100 177-279 6-108 (111)
78 PLN03218 maturation of RBCL 1; 99.6 8.6E-11 1.9E-15 146.7 49.0 381 389-805 412-818 (1060)
79 PLN03081 pentatricopeptide (PP 99.6 8.1E-12 1.8E-16 152.2 38.8 396 386-823 126-543 (697)
80 KOG1174 Anaphase-promoting com 99.6 1.8E-12 3.9E-17 139.2 28.5 261 417-745 234-504 (564)
81 KOG1129 TPR repeat-containing 99.6 1.2E-13 2.6E-18 144.2 18.9 241 483-784 227-469 (478)
82 TIGR03302 OM_YfiO outer membra 99.6 3.5E-13 7.5E-18 141.6 21.3 186 512-775 33-234 (235)
83 PRK10747 putative protoheme IX 99.5 4.7E-12 1E-16 143.9 31.7 281 481-823 86-376 (398)
84 smart00225 BTB Broad-Complex, 99.5 2.2E-14 4.8E-19 125.9 9.9 90 183-275 1-90 (90)
85 PLN03218 maturation of RBCL 1; 99.5 2.2E-10 4.7E-15 143.1 48.9 377 391-803 378-783 (1060)
86 KOG1840 Kinesin light chain [C 99.5 1E-12 2.2E-17 150.4 24.6 256 380-741 196-479 (508)
87 PRK15179 Vi polysaccharide bio 99.5 3.7E-12 8.1E-17 152.2 25.1 152 596-787 78-232 (694)
88 KOG4591 Uncharacterized conser 99.5 5.6E-13 1.2E-17 129.9 14.6 155 176-337 61-227 (280)
89 KOG1156 N-terminal acetyltrans 99.4 2.6E-10 5.5E-15 129.2 34.8 157 384-540 8-171 (700)
90 PRK14720 transcript cleavage f 99.4 1.3E-11 2.8E-16 148.6 26.1 265 472-809 24-312 (906)
91 PRK15179 Vi polysaccharide bio 99.4 4.8E-12 1E-16 151.3 22.5 150 470-677 77-228 (694)
92 KOG0553 TPR repeat-containing 99.4 6.3E-13 1.4E-17 139.0 12.7 131 479-667 81-215 (304)
93 PRK10370 formate-dependent nit 99.4 3.1E-12 6.8E-17 131.2 17.6 116 589-744 58-176 (198)
94 KOG0495 HAT repeat protein [RN 99.4 2E-09 4.3E-14 121.6 40.7 366 385-784 518-891 (913)
95 KOG0553 TPR repeat-containing 99.4 5E-12 1.1E-16 132.4 15.8 118 604-761 81-200 (304)
96 PRK10370 formate-dependent nit 99.4 5.1E-12 1.1E-16 129.6 15.6 122 492-671 52-177 (198)
97 PF12569 NARP1: NMDA receptor- 99.4 2.9E-10 6.3E-15 131.7 28.9 324 459-823 18-385 (517)
98 KOG1156 N-terminal acetyltrans 99.4 7.4E-09 1.6E-13 117.6 38.3 347 425-774 17-435 (700)
99 COG2956 Predicted N-acetylgluc 99.3 1.1E-09 2.4E-14 115.3 29.0 256 460-779 50-317 (389)
100 KOG1130 Predicted G-alpha GTPa 99.3 1.3E-11 2.8E-16 132.4 14.1 283 388-773 22-344 (639)
101 TIGR02552 LcrH_SycD type III s 99.3 1.7E-11 3.6E-16 117.2 13.4 113 592-744 5-117 (135)
102 PRK04841 transcriptional regul 99.3 6.2E-09 1.3E-13 130.7 39.4 373 385-778 343-765 (903)
103 TIGR02552 LcrH_SycD type III s 99.3 3.7E-11 8E-16 114.8 14.3 114 501-672 5-119 (135)
104 COG2956 Predicted N-acetylgluc 99.3 5.5E-10 1.2E-14 117.5 23.9 265 483-806 39-314 (389)
105 KOG0495 HAT repeat protein [RN 99.3 8.7E-08 1.9E-12 108.6 41.0 361 416-809 517-886 (913)
106 KOG4682 Uncharacterized conser 99.3 2.3E-11 5.1E-16 130.1 11.5 179 176-362 64-253 (488)
107 KOG0783 Uncharacterized conser 99.2 9.6E-12 2.1E-16 142.1 6.5 137 178-317 707-849 (1267)
108 KOG1130 Predicted G-alpha GTPa 99.2 1.1E-10 2.4E-15 125.4 14.0 280 384-773 56-384 (639)
109 KOG4648 Uncharacterized conser 99.2 1.1E-11 2.4E-16 130.3 6.1 230 482-810 100-337 (536)
110 COG5010 TadD Flp pilus assembl 99.2 8.2E-10 1.8E-14 114.0 19.4 123 602-764 98-222 (257)
111 COG5010 TadD Flp pilus assembl 99.2 1.2E-09 2.5E-14 112.9 19.9 181 462-741 50-231 (257)
112 COG4785 NlpI Lipoprotein NlpI, 99.2 1.4E-09 2.9E-14 108.7 18.7 99 448-546 64-167 (297)
113 KOG2376 Signal recognition par 99.2 4.4E-08 9.5E-13 110.4 32.1 305 483-819 83-503 (652)
114 PRK15363 pathogenicity island 99.2 3.6E-10 7.8E-15 109.6 12.6 105 597-741 27-132 (157)
115 KOG4648 Uncharacterized conser 99.1 4E-11 8.6E-16 126.2 6.2 206 515-819 100-312 (536)
116 PRK14720 transcript cleavage f 99.1 3.6E-09 7.7E-14 127.8 23.4 237 380-682 28-268 (906)
117 KOG1128 Uncharacterized conser 99.1 7.9E-10 1.7E-14 126.8 16.7 215 388-670 403-619 (777)
118 PLN03088 SGT1, suppressor of 99.1 7.2E-10 1.6E-14 124.1 15.9 112 482-651 5-117 (356)
119 COG3071 HemY Uncharacterized e 99.1 2.2E-07 4.8E-12 100.9 32.5 285 380-741 81-390 (400)
120 PRK02603 photosystem I assembl 99.1 3E-09 6.4E-14 106.7 16.7 98 513-665 36-133 (172)
121 PRK10153 DNA-binding transcrip 99.1 2.1E-09 4.6E-14 125.2 17.7 145 515-676 342-491 (517)
122 KOG2376 Signal recognition par 99.1 3.8E-07 8.2E-12 103.0 34.3 365 387-794 83-511 (652)
123 PRK15363 pathogenicity island 99.1 1.6E-09 3.6E-14 105.0 13.7 107 628-774 24-133 (157)
124 PLN03088 SGT1, suppressor of 99.1 1.2E-09 2.6E-14 122.3 14.7 107 607-753 5-113 (356)
125 KOG3060 Uncharacterized conser 99.1 2.2E-08 4.8E-13 102.6 22.1 184 473-751 46-232 (289)
126 PF13414 TPR_11: TPR repeat; P 99.1 4.5E-10 9.7E-15 94.5 7.9 67 603-669 2-69 (69)
127 PF14938 SNAP: Soluble NSF att 99.1 3.2E-09 6.9E-14 115.2 16.4 155 619-807 89-270 (282)
128 PF13414 TPR_11: TPR repeat; P 99.1 5.8E-10 1.3E-14 93.8 8.3 67 477-543 1-69 (69)
129 PRK02603 photosystem I assembl 99.1 1.6E-09 3.6E-14 108.5 12.9 120 600-777 31-153 (172)
130 PRK04841 transcriptional regul 99.0 8.3E-08 1.8E-12 120.6 30.3 275 383-742 452-761 (903)
131 KOG1128 Uncharacterized conser 99.0 1.2E-08 2.5E-13 117.4 19.3 220 476-741 395-616 (777)
132 CHL00033 ycf3 photosystem I as 99.0 7.4E-09 1.6E-13 103.3 15.7 118 494-666 14-141 (168)
133 CHL00033 ycf3 photosystem I as 99.0 7E-09 1.5E-13 103.5 15.1 104 603-740 34-141 (168)
134 COG0457 NrfG FOG: TPR repeat [ 99.0 6.6E-07 1.4E-11 88.8 28.8 218 462-776 40-268 (291)
135 COG0457 NrfG FOG: TPR repeat [ 99.0 9.5E-07 2.1E-11 87.6 29.1 222 492-806 36-268 (291)
136 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.3E-08 2.8E-13 94.2 14.1 66 480-545 3-72 (119)
137 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.1E-08 2.4E-13 94.7 13.6 105 512-671 2-109 (119)
138 COG4783 Putative Zn-dependent 99.0 5.1E-08 1.1E-12 108.3 20.7 130 472-659 299-429 (484)
139 KOG3785 Uncharacterized conser 98.9 1.6E-06 3.4E-11 92.5 29.9 411 386-824 60-511 (557)
140 COG3071 HemY Uncharacterized e 98.9 2.1E-06 4.6E-11 93.4 31.7 282 463-772 102-389 (400)
141 PRK10153 DNA-binding transcrip 98.9 1.7E-08 3.8E-13 117.7 16.9 146 382-549 338-490 (517)
142 PRK11906 transcriptional regul 98.9 2E-08 4.4E-13 112.1 15.9 139 516-671 259-405 (458)
143 cd00189 TPR Tetratricopeptide 98.9 1.4E-08 2.9E-13 87.5 11.4 98 606-743 2-99 (100)
144 KOG1915 Cell cycle control pro 98.9 0.0001 2.2E-09 81.7 43.4 411 386-805 76-538 (677)
145 COG4783 Putative Zn-dependent 98.9 3E-07 6.5E-12 102.3 23.6 152 462-671 250-407 (484)
146 PRK10866 outer membrane biogen 98.9 2.2E-07 4.8E-12 98.4 22.0 71 477-547 30-104 (243)
147 COG4785 NlpI Lipoprotein NlpI, 98.9 3.8E-08 8.2E-13 98.6 14.7 98 416-513 66-167 (297)
148 cd00189 TPR Tetratricopeptide 98.8 2.8E-08 6.1E-13 85.5 11.3 98 514-669 2-99 (100)
149 PF12569 NARP1: NMDA receptor- 98.8 4.3E-06 9.4E-11 97.3 32.1 304 386-741 7-334 (517)
150 PF13432 TPR_16: Tetratricopep 98.8 1.1E-08 2.4E-13 85.0 7.3 64 608-671 1-64 (65)
151 KOG3060 Uncharacterized conser 98.8 3.4E-07 7.3E-12 94.1 19.0 180 599-784 47-231 (289)
152 PRK11906 transcriptional regul 98.8 1.3E-07 2.9E-12 105.7 17.4 146 462-665 275-434 (458)
153 PRK10866 outer membrane biogen 98.8 4.2E-07 9.1E-12 96.4 19.8 178 602-797 30-235 (243)
154 PF14938 SNAP: Soluble NSF att 98.8 1E-06 2.2E-11 95.7 22.2 144 514-744 116-269 (282)
155 KOG4234 TPR repeat-containing 98.8 5.7E-08 1.2E-12 96.2 11.0 110 639-783 96-207 (271)
156 KOG4340 Uncharacterized conser 98.7 4.3E-06 9.3E-11 87.5 24.7 361 384-774 45-444 (459)
157 KOG0543 FKBP-type peptidyl-pro 98.7 1.4E-07 3E-12 103.2 14.1 29 480-508 209-237 (397)
158 PF13525 YfiO: Outer membrane 98.7 9.3E-07 2E-11 91.2 19.4 184 478-731 4-197 (203)
159 KOG0543 FKBP-type peptidyl-pro 98.7 2.3E-07 5E-12 101.5 15.0 119 641-784 211-331 (397)
160 PF13432 TPR_16: Tetratricopep 98.7 6.4E-08 1.4E-12 80.4 8.4 64 483-546 1-65 (65)
161 PRK10803 tol-pal system protei 98.7 2.9E-07 6.2E-12 98.5 15.2 112 603-751 141-256 (263)
162 KOG4555 TPR repeat-containing 98.7 1.3E-07 2.8E-12 87.7 10.1 85 462-546 60-149 (175)
163 PRK10803 tol-pal system protei 98.7 4.7E-07 1E-11 96.8 16.2 108 478-640 141-253 (263)
164 PF09976 TPR_21: Tetratricopep 98.7 5.2E-07 1.1E-11 87.8 15.1 119 491-665 23-145 (145)
165 KOG4234 TPR repeat-containing 98.7 1E-07 2.2E-12 94.5 9.6 101 518-671 101-201 (271)
166 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 7.7E-08 1.7E-12 107.4 9.7 73 599-671 70-146 (453)
167 KOG4555 TPR repeat-containing 98.6 4.7E-07 1E-11 84.0 12.9 105 605-745 44-148 (175)
168 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 7.6E-08 1.6E-12 107.4 9.2 72 474-545 70-146 (453)
169 COG4235 Cytochrome c biogenesi 98.6 3.9E-07 8.5E-12 96.6 14.0 51 621-671 139-189 (287)
170 PF04733 Coatomer_E: Coatomer 98.6 8.4E-07 1.8E-11 96.4 17.0 249 393-671 11-269 (290)
171 PF13525 YfiO: Outer membrane 98.6 1.8E-06 3.9E-11 89.1 18.5 173 512-762 5-196 (203)
172 PF12688 TPR_5: Tetratrico pep 98.6 8.5E-07 1.8E-11 83.3 14.4 99 513-666 2-103 (120)
173 PF09976 TPR_21: Tetratricopep 98.6 1.1E-06 2.4E-11 85.5 15.9 107 592-739 33-145 (145)
174 PF12895 Apc3: Anaphase-promot 98.6 1.3E-07 2.9E-12 82.9 8.4 81 617-738 2-84 (84)
175 PF12895 Apc3: Anaphase-promot 98.6 6.3E-08 1.4E-12 85.0 6.2 60 604-664 25-84 (84)
176 COG4235 Cytochrome c biogenesi 98.6 6.5E-07 1.4E-11 95.0 14.1 115 590-744 142-259 (287)
177 PF04733 Coatomer_E: Coatomer 98.5 1.6E-06 3.4E-11 94.3 16.1 69 712-780 201-272 (290)
178 PF06552 TOM20_plant: Plant sp 98.5 4.7E-07 1E-11 89.2 9.5 86 620-745 7-113 (186)
179 PF13424 TPR_12: Tetratricopep 98.5 1.3E-07 2.9E-12 81.5 4.7 74 635-741 2-75 (78)
180 KOG4340 Uncharacterized conser 98.5 7.2E-06 1.6E-10 85.9 18.0 177 462-666 27-206 (459)
181 KOG1915 Cell cycle control pro 98.5 0.0032 7E-08 70.2 38.7 388 417-808 75-505 (677)
182 KOG2047 mRNA splicing factor [ 98.5 0.0024 5.2E-08 73.5 38.7 319 469-808 339-693 (835)
183 PF12688 TPR_5: Tetratrico pep 98.4 5.3E-06 1.2E-10 77.9 13.8 98 480-632 2-103 (120)
184 KOG1941 Acetylcholine receptor 98.4 6.9E-05 1.5E-09 80.6 22.6 232 386-668 9-276 (518)
185 PF06552 TOM20_plant: Plant sp 98.4 1.4E-06 2.9E-11 86.0 8.7 89 462-550 8-118 (186)
186 PF13371 TPR_9: Tetratricopept 98.3 1.4E-06 3E-11 74.0 7.2 62 611-672 2-63 (73)
187 PF13371 TPR_9: Tetratricopept 98.3 2.3E-06 5E-11 72.6 7.5 62 486-547 2-64 (73)
188 KOG3785 Uncharacterized conser 98.3 0.00042 9.1E-09 74.4 25.3 330 394-770 33-419 (557)
189 PRK15331 chaperone protein Sic 98.3 9.7E-06 2.1E-10 79.4 12.0 106 596-741 29-134 (165)
190 KOG1941 Acetylcholine receptor 98.3 6E-05 1.3E-09 81.1 18.6 244 481-773 8-275 (518)
191 PF14559 TPR_19: Tetratricopep 98.2 3.1E-06 6.8E-11 70.7 7.0 60 614-673 1-60 (68)
192 PF13512 TPR_18: Tetratricopep 98.2 2.5E-05 5.3E-10 74.9 13.9 69 479-547 10-82 (142)
193 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3E-05 6.5E-10 87.3 16.4 121 488-669 178-298 (395)
194 PRK15331 chaperone protein Sic 98.2 1.8E-05 3.9E-10 77.5 12.6 101 513-672 38-138 (165)
195 KOG0376 Serine-threonine phosp 98.2 2.3E-06 5E-11 95.4 6.4 91 460-550 19-110 (476)
196 PF13424 TPR_12: Tetratricopep 98.2 1.9E-06 4.2E-11 74.2 4.4 68 601-668 2-76 (78)
197 COG4105 ComL DNA uptake lipopr 98.2 0.00013 2.9E-09 76.1 18.5 70 478-547 33-106 (254)
198 KOG2047 mRNA splicing factor [ 98.1 0.035 7.7E-07 64.3 38.5 411 388-805 107-581 (835)
199 KOG0545 Aryl-hydrocarbon recep 98.1 9.9E-06 2.1E-10 82.9 9.4 100 712-811 178-301 (329)
200 COG4105 ComL DNA uptake lipopr 98.1 0.0003 6.5E-09 73.5 19.1 174 602-776 32-235 (254)
201 KOG0376 Serine-threonine phosp 98.0 3.5E-06 7.7E-11 94.0 4.7 100 714-813 6-111 (476)
202 PF14559 TPR_19: Tetratricopep 98.0 1.1E-05 2.5E-10 67.2 6.0 57 490-546 2-59 (68)
203 KOG0783 Uncharacterized conser 98.0 3.5E-06 7.7E-11 97.6 3.7 70 177-248 554-635 (1267)
204 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00016 3.6E-09 81.4 16.9 86 613-738 209-294 (395)
205 KOG1308 Hsp70-interacting prot 98.0 3.6E-06 7.9E-11 90.0 3.3 85 461-545 130-215 (377)
206 PF13512 TPR_18: Tetratricopep 98.0 9.9E-05 2.1E-09 70.8 12.7 104 638-778 10-133 (142)
207 COG1729 Uncharacterized protei 98.0 0.00012 2.6E-09 77.1 14.2 106 481-641 143-252 (262)
208 KOG0511 Ankyrin repeat protein 98.0 2.8E-05 6.1E-10 83.5 9.5 143 184-331 295-446 (516)
209 COG4700 Uncharacterized protei 97.9 0.00065 1.4E-08 67.3 17.7 129 606-772 91-221 (251)
210 COG4700 Uncharacterized protei 97.9 0.0011 2.5E-08 65.6 18.7 143 462-662 73-217 (251)
211 PF13431 TPR_17: Tetratricopep 97.9 1.1E-05 2.4E-10 58.2 3.5 32 627-658 2-33 (34)
212 PF13431 TPR_17: Tetratricopep 97.9 1.1E-05 2.4E-10 58.2 3.4 33 468-500 2-34 (34)
213 KOG4642 Chaperone-dependent E3 97.9 3.9E-05 8.5E-10 78.5 8.1 81 462-542 27-108 (284)
214 KOG2053 Mitochondrial inherita 97.8 0.013 2.9E-07 70.0 28.3 204 462-671 26-259 (932)
215 KOG0545 Aryl-hydrocarbon recep 97.8 0.00047 1E-08 70.9 13.9 119 384-547 179-299 (329)
216 PF00515 TPR_1: Tetratricopept 97.8 4.3E-05 9.2E-10 54.8 4.5 34 638-671 1-34 (34)
217 PF00515 TPR_1: Tetratricopept 97.7 6.7E-05 1.5E-09 53.7 4.7 33 513-545 2-34 (34)
218 COG3898 Uncharacterized membra 97.7 0.059 1.3E-06 59.3 28.4 278 463-772 102-391 (531)
219 KOG1070 rRNA processing protei 97.6 0.014 3E-07 72.5 26.0 216 462-742 1441-1664(1710)
220 KOG4642 Chaperone-dependent E3 97.6 0.00012 2.5E-09 75.1 7.3 79 589-667 29-107 (284)
221 KOG3081 Vesicle coat complex C 97.6 0.0071 1.5E-07 63.4 20.3 164 478-667 107-270 (299)
222 COG1729 Uncharacterized protei 97.6 0.0014 3E-08 69.2 14.6 104 515-673 144-250 (262)
223 KOG2471 TPR repeat-containing 97.6 0.0064 1.4E-07 68.1 19.8 137 394-554 217-377 (696)
224 KOG2838 Uncharacterized conser 97.5 5.7E-05 1.2E-09 77.8 3.6 115 191-317 261-390 (401)
225 PF07719 TPR_2: Tetratricopept 97.5 0.00014 3.1E-09 51.8 4.4 33 638-670 1-33 (34)
226 KOG2053 Mitochondrial inherita 97.5 0.0038 8.3E-08 74.4 18.5 84 589-672 28-111 (932)
227 KOG2716 Polymerase delta-inter 97.5 0.00069 1.5E-08 70.2 10.5 94 184-281 7-104 (230)
228 KOG3616 Selective LIM binding 97.4 0.021 4.5E-07 66.5 22.5 48 492-539 745-792 (1636)
229 COG3898 Uncharacterized membra 97.4 0.31 6.7E-06 53.9 31.9 285 388-707 89-395 (531)
230 PF13428 TPR_14: Tetratricopep 97.4 0.00029 6.4E-09 53.8 5.4 42 605-646 2-43 (44)
231 PF07719 TPR_2: Tetratricopept 97.4 0.00029 6.3E-09 50.1 4.9 33 513-545 2-34 (34)
232 KOG1550 Extracellular protein 97.4 0.098 2.1E-06 62.4 28.9 186 394-667 223-426 (552)
233 KOG1586 Protein required for f 97.4 0.013 2.8E-07 60.3 17.5 169 602-805 72-267 (288)
234 KOG1308 Hsp70-interacting prot 97.2 0.00046 1E-08 74.3 5.8 86 427-512 126-215 (377)
235 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0015 3.2E-08 70.1 9.5 77 478-554 80-161 (390)
236 PF02259 FAT: FAT domain; Int 97.2 0.17 3.6E-06 56.2 26.4 185 600-811 142-346 (352)
237 PF02214 BTB_2: BTB/POZ domain 97.2 0.00059 1.3E-08 61.2 5.1 88 184-274 1-94 (94)
238 KOG2796 Uncharacterized conser 97.1 0.048 1E-06 57.1 19.3 139 607-779 180-321 (366)
239 KOG3617 WD40 and TPR repeat-co 97.1 0.12 2.6E-06 61.4 24.4 141 389-541 832-996 (1416)
240 KOG2796 Uncharacterized conser 97.1 0.024 5.1E-07 59.3 16.5 139 481-671 179-319 (366)
241 PF13281 DUF4071: Domain of un 97.1 0.12 2.6E-06 57.8 23.3 141 603-743 178-336 (374)
242 KOG3617 WD40 and TPR repeat-co 97.1 0.051 1.1E-06 64.4 20.6 109 393-533 738-847 (1416)
243 KOG0551 Hsp90 co-chaperone CNS 97.1 0.0017 3.8E-08 69.6 8.2 99 711-809 80-188 (390)
244 PF13428 TPR_14: Tetratricopep 97.0 0.0013 2.9E-08 50.1 5.2 38 513-550 2-39 (44)
245 PF04184 ST7: ST7 protein; In 97.0 0.016 3.4E-07 65.7 15.4 174 616-806 180-378 (539)
246 KOG1070 rRNA processing protei 97.0 0.1 2.3E-06 65.2 22.9 234 491-784 1436-1676(1710)
247 PF13181 TPR_8: Tetratricopept 96.9 0.0012 2.7E-08 47.0 4.1 32 639-670 2-33 (34)
248 COG2976 Uncharacterized protei 96.9 0.038 8.3E-07 55.6 15.7 158 642-824 35-205 (207)
249 KOG1550 Extracellular protein 96.9 0.16 3.5E-06 60.5 24.2 264 382-669 243-540 (552)
250 PF10345 Cohesin_load: Cohesin 96.8 2 4.2E-05 52.1 34.7 346 367-775 42-481 (608)
251 PF13176 TPR_7: Tetratricopept 96.8 0.0013 2.8E-08 47.9 3.2 28 714-741 1-28 (36)
252 PF13181 TPR_8: Tetratricopept 96.7 0.0022 4.7E-08 45.7 4.1 31 514-544 3-33 (34)
253 KOG3473 RNA polymerase II tran 96.7 0.0048 1E-07 54.3 6.7 79 184-266 19-111 (112)
254 KOG3081 Vesicle coat complex C 96.7 0.32 7E-06 51.3 21.0 166 603-779 107-277 (299)
255 KOG0530 Protein farnesyltransf 96.7 0.29 6.2E-06 51.5 20.5 134 590-726 98-236 (318)
256 KOG1585 Protein required for f 96.7 0.19 4E-06 52.4 18.9 84 714-797 152-250 (308)
257 PF13281 DUF4071: Domain of un 96.7 0.052 1.1E-06 60.7 16.4 169 608-808 145-339 (374)
258 PF12968 DUF3856: Domain of Un 96.6 0.047 1E-06 50.5 12.8 104 381-507 5-128 (144)
259 COG3118 Thioredoxin domain-con 96.5 0.095 2.1E-06 56.1 16.2 155 484-662 139-296 (304)
260 KOG2610 Uncharacterized conser 96.5 0.3 6.5E-06 52.9 19.8 162 385-546 105-283 (491)
261 PF10300 DUF3808: Protein of u 96.5 0.084 1.8E-06 61.6 17.5 87 589-675 252-342 (468)
262 KOG1586 Protein required for f 96.5 0.14 3.1E-06 52.9 16.5 65 481-545 115-187 (288)
263 PF10300 DUF3808: Protein of u 96.5 0.033 7.1E-07 64.9 13.7 82 462-543 250-336 (468)
264 KOG2610 Uncharacterized conser 96.4 0.26 5.7E-06 53.3 18.7 168 468-659 54-230 (491)
265 KOG0530 Protein farnesyltransf 96.4 0.61 1.3E-05 49.2 20.5 164 462-649 60-232 (318)
266 PF02259 FAT: FAT domain; Int 96.4 0.78 1.7E-05 50.8 23.5 39 638-676 252-297 (352)
267 KOG0985 Vesicle coat protein c 96.3 3.9 8.4E-05 50.4 29.3 239 477-733 1102-1375(1666)
268 PF04184 ST7: ST7 protein; In 96.3 0.2 4.3E-06 57.1 18.0 27 518-544 265-291 (539)
269 KOG2838 Uncharacterized conser 96.3 0.0041 8.9E-08 64.5 4.4 67 180-248 129-197 (401)
270 KOG1987 Speckle-type POZ prote 96.2 0.0023 4.9E-08 70.0 2.4 119 190-312 109-230 (297)
271 PF03704 BTAD: Bacterial trans 96.2 0.12 2.6E-06 49.9 14.2 61 606-666 64-124 (146)
272 KOG3616 Selective LIM binding 96.2 1.1 2.3E-05 53.0 23.2 61 708-768 657-730 (1636)
273 PF13176 TPR_7: Tetratricopept 96.2 0.0052 1.1E-07 44.7 3.3 31 640-670 1-31 (36)
274 PF03704 BTAD: Bacterial trans 96.1 0.054 1.2E-06 52.4 11.0 61 480-540 63-124 (146)
275 KOG0890 Protein kinase of the 96.0 8 0.00017 52.0 32.0 368 388-816 1388-1797(2382)
276 KOG2471 TPR repeat-containing 95.9 0.038 8.3E-07 62.1 9.8 148 606-787 210-378 (696)
277 PF12968 DUF3856: Domain of Un 95.8 0.24 5.1E-06 46.0 12.8 96 646-772 17-128 (144)
278 KOG1585 Protein required for f 95.8 0.54 1.2E-05 49.1 16.7 176 480-742 32-220 (308)
279 PF13174 TPR_6: Tetratricopept 95.8 0.012 2.5E-07 41.3 3.5 32 639-670 1-32 (33)
280 COG2976 Uncharacterized protei 95.7 0.32 7E-06 49.2 14.6 85 462-546 106-193 (207)
281 COG0790 FOG: TPR repeat, SEL1 95.7 1 2.2E-05 48.8 20.1 146 605-758 74-236 (292)
282 smart00028 TPR Tetratricopepti 95.5 0.016 3.4E-07 39.0 3.3 32 639-670 2-33 (34)
283 PRK10941 hypothetical protein; 95.3 0.096 2.1E-06 56.3 10.1 59 613-671 190-248 (269)
284 KOG1310 WD40 repeat protein [G 95.3 0.043 9.4E-07 62.2 7.4 35 605-639 446-480 (758)
285 smart00028 TPR Tetratricopepti 95.2 0.027 5.9E-07 37.7 3.9 30 515-544 4-33 (34)
286 KOG0985 Vesicle coat protein c 95.2 4.2 9.2E-05 50.1 23.6 143 601-769 1101-1245(1666)
287 PF08424 NRDE-2: NRDE-2, neces 95.1 0.66 1.4E-05 51.4 16.3 30 713-742 155-184 (321)
288 PF13174 TPR_6: Tetratricopept 95.0 0.037 8E-07 38.7 3.9 31 514-544 2-32 (33)
289 COG2909 MalT ATP-dependent tra 95.0 5.7 0.00012 48.6 24.1 227 517-799 420-684 (894)
290 KOG0529 Protein geranylgeranyl 94.9 1.7 3.6E-05 48.7 18.2 136 494-650 90-241 (421)
291 COG0790 FOG: TPR repeat, SEL1 94.9 0.98 2.1E-05 48.9 16.8 80 462-545 172-270 (292)
292 PF08631 SPO22: Meiosis protei 94.8 7.4 0.00016 42.1 25.2 163 490-668 4-187 (278)
293 PRK10941 hypothetical protein; 94.8 0.11 2.4E-06 55.9 8.5 60 588-647 199-258 (269)
294 PF14561 TPR_20: Tetratricopep 94.7 0.25 5.3E-06 44.1 9.3 76 464-539 7-85 (90)
295 PF14853 Fis1_TPR_C: Fis1 C-te 94.7 0.064 1.4E-06 42.8 4.9 35 513-547 2-36 (53)
296 PF13374 TPR_10: Tetratricopep 94.6 0.041 8.9E-07 40.6 3.6 29 713-741 3-31 (42)
297 PF08631 SPO22: Meiosis protei 94.5 8.5 0.00018 41.7 23.7 100 382-508 34-150 (278)
298 COG2909 MalT ATP-dependent tra 94.4 17 0.00037 44.7 29.0 266 384-667 348-647 (894)
299 COG3118 Thioredoxin domain-con 94.4 1.4 3E-05 47.5 15.4 124 388-511 139-268 (304)
300 smart00512 Skp1 Found in Skp1 94.3 0.2 4.3E-06 45.8 8.1 79 184-265 4-102 (104)
301 PF05843 Suf: Suppressor of fo 94.1 1.2 2.5E-05 48.4 15.0 130 609-778 6-141 (280)
302 KOG3824 Huntingtin interacting 94.1 0.15 3.3E-06 54.5 7.5 71 608-678 120-191 (472)
303 PF09986 DUF2225: Uncharacteri 94.0 0.37 8.1E-06 50.1 10.3 98 618-742 91-195 (214)
304 PF04781 DUF627: Protein of un 93.9 0.49 1.1E-05 43.6 9.5 106 518-668 2-108 (111)
305 PF14561 TPR_20: Tetratricopep 93.7 0.46 9.9E-06 42.4 8.9 48 590-637 8-55 (90)
306 KOG1310 WD40 repeat protein [G 93.6 0.19 4.2E-06 57.2 7.8 87 589-675 393-482 (758)
307 KOG3824 Huntingtin interacting 93.6 0.18 4E-06 53.9 7.2 44 494-551 112-155 (472)
308 PF13374 TPR_10: Tetratricopep 93.5 0.12 2.6E-06 38.0 4.2 31 638-668 2-32 (42)
309 COG3914 Spy Predicted O-linked 93.5 1.1 2.5E-05 52.1 13.7 126 464-641 50-179 (620)
310 COG4976 Predicted methyltransf 93.5 0.21 4.5E-06 51.6 7.1 58 614-671 5-62 (287)
311 PF08424 NRDE-2: NRDE-2, neces 92.8 8 0.00017 42.9 19.1 82 466-547 6-100 (321)
312 KOG1665 AFH1-interacting prote 92.8 0.3 6.4E-06 49.8 6.9 93 182-277 9-106 (302)
313 KOG2714 SETA binding protein S 92.8 0.33 7.1E-06 54.2 7.8 85 184-272 13-102 (465)
314 COG4941 Predicted RNA polymera 92.5 3 6.5E-05 45.5 14.2 190 462-677 213-405 (415)
315 COG3914 Spy Predicted O-linked 92.5 2 4.4E-05 50.1 13.8 128 593-754 54-184 (620)
316 KOG2300 Uncharacterized conser 92.4 7.9 0.00017 44.3 17.9 143 381-546 365-519 (629)
317 PF03931 Skp1_POZ: Skp1 family 92.4 0.51 1.1E-05 38.9 6.8 56 184-244 3-59 (62)
318 PF14853 Fis1_TPR_C: Fis1 C-te 92.3 0.53 1.2E-05 37.6 6.4 36 608-643 5-40 (53)
319 KOG3783 Uncharacterized conser 92.3 9 0.00019 44.5 18.5 245 462-742 250-521 (546)
320 PF12862 Apc5: Anaphase-promot 92.2 0.5 1.1E-05 42.3 7.1 59 613-671 7-74 (94)
321 PF04781 DUF627: Protein of un 91.9 1.9 4.1E-05 39.8 10.3 101 422-541 3-107 (111)
322 KOG4507 Uncharacterized conser 91.7 0.45 9.8E-06 54.9 7.4 89 459-547 621-711 (886)
323 KOG4507 Uncharacterized conser 91.6 0.27 5.9E-06 56.6 5.6 133 612-783 576-715 (886)
324 PF05843 Suf: Suppressor of fo 91.3 3.4 7.5E-05 44.8 13.8 131 385-545 3-140 (280)
325 COG4649 Uncharacterized protei 91.3 4.1 9E-05 40.6 12.5 155 644-821 45-213 (221)
326 COG2912 Uncharacterized conser 91.2 0.88 1.9E-05 48.5 8.6 58 590-647 201-258 (269)
327 COG4976 Predicted methyltransf 91.0 0.31 6.7E-06 50.4 4.7 54 724-777 7-62 (287)
328 PF04910 Tcf25: Transcriptiona 90.8 10 0.00023 42.7 17.3 76 471-546 32-138 (360)
329 PF04053 Coatomer_WDAD: Coatom 90.5 5.6 0.00012 46.1 15.1 154 617-800 274-428 (443)
330 PF10516 SHNi-TPR: SHNi-TPR; 90.4 0.3 6.5E-06 36.1 3.0 31 639-669 2-32 (38)
331 PF11822 DUF3342: Domain of un 90.3 0.38 8.2E-06 52.3 5.0 85 191-277 14-99 (317)
332 PF10579 Rapsyn_N: Rapsyn N-te 89.7 1.8 4E-05 37.3 7.6 62 606-667 8-72 (80)
333 KOG1839 Uncharacterized protei 89.7 2.7 5.9E-05 53.2 12.2 177 481-741 934-1128(1236)
334 KOG4014 Uncharacterized conser 89.1 7.8 0.00017 39.0 12.5 117 636-757 32-157 (248)
335 COG5159 RPN6 26S proteasome re 89.1 13 0.00028 39.9 14.9 49 484-532 8-65 (421)
336 PF10516 SHNi-TPR: SHNi-TPR; 88.7 0.45 9.8E-06 35.2 2.8 29 713-741 2-30 (38)
337 KOG1464 COP9 signalosome, subu 88.6 7.2 0.00016 41.5 12.5 103 714-819 193-306 (440)
338 KOG3840 Uncharaterized conserv 88.3 0.33 7.2E-06 51.5 2.6 88 183-271 97-188 (438)
339 PF15015 NYD-SP12_N: Spermatog 88.1 5.6 0.00012 44.7 11.9 57 609-665 233-289 (569)
340 KOG0511 Ankyrin repeat protein 87.9 0.34 7.3E-06 53.0 2.5 91 181-276 149-240 (516)
341 COG2912 Uncharacterized conser 87.7 1.2 2.7E-05 47.5 6.5 65 483-547 185-250 (269)
342 PRK13184 pknD serine/threonine 86.5 58 0.0013 41.3 21.0 96 449-547 482-587 (932)
343 PF11207 DUF2989: Protein of u 86.3 9.1 0.0002 39.2 11.6 55 602-657 139-197 (203)
344 PF07721 TPR_4: Tetratricopept 85.1 0.95 2.1E-05 30.3 2.7 24 639-662 2-25 (26)
345 PF07079 DUF1347: Protein of u 84.6 83 0.0018 36.2 20.8 232 520-801 306-543 (549)
346 KOG1839 Uncharacterized protei 84.3 6.4 0.00014 50.1 11.2 66 706-771 1051-1126(1236)
347 PF10602 RPN7: 26S proteasome 84.1 5.2 0.00011 40.3 8.7 26 640-665 38-63 (177)
348 KOG0529 Protein geranylgeranyl 83.9 27 0.00058 39.5 14.7 94 589-682 94-194 (421)
349 cd02682 MIT_AAA_Arch MIT: doma 83.7 6 0.00013 34.0 7.5 29 713-741 7-35 (75)
350 PF07720 TPR_3: Tetratricopept 83.4 2.5 5.5E-05 30.8 4.5 33 638-670 1-35 (36)
351 COG4649 Uncharacterized protei 82.7 57 0.0012 32.9 15.5 56 490-545 69-127 (221)
352 PF10579 Rapsyn_N: Rapsyn N-te 82.7 7.5 0.00016 33.7 7.7 58 480-537 7-68 (80)
353 PF00244 14-3-3: 14-3-3 protei 82.5 70 0.0015 33.8 17.2 60 482-541 4-66 (236)
354 PRK15180 Vi polysaccharide bio 82.3 4.7 0.0001 45.9 8.1 48 491-538 301-349 (831)
355 PF09613 HrpB1_HrpK: Bacterial 82.3 14 0.0003 36.6 10.5 62 611-672 17-78 (160)
356 PRK15180 Vi polysaccharide bio 82.3 6.7 0.00015 44.7 9.2 74 592-665 311-384 (831)
357 PF07721 TPR_4: Tetratricopept 81.9 1.6 3.6E-05 29.1 2.8 24 713-736 2-25 (26)
358 KOG0546 HSP90 co-chaperone CPR 81.2 1.2 2.6E-05 48.9 3.0 64 608-671 279-342 (372)
359 KOG2041 WD40 repeat protein [G 81.0 1.4E+02 0.003 36.2 19.8 89 627-738 841-936 (1189)
360 PF10602 RPN7: 26S proteasome 80.8 8.3 0.00018 38.9 8.8 62 712-773 36-102 (177)
361 PF00244 14-3-3: 14-3-3 protei 80.5 61 0.0013 34.3 15.6 33 515-547 4-36 (236)
362 PF12862 Apc5: Anaphase-promot 80.4 6.7 0.00015 35.0 7.2 58 488-545 7-74 (94)
363 KOG3364 Membrane protein invol 80.0 14 0.00031 35.4 9.3 73 713-785 33-112 (149)
364 PF09986 DUF2225: Uncharacteri 79.3 17 0.00037 37.9 10.7 66 603-668 117-195 (214)
365 PF10345 Cohesin_load: Cohesin 79.0 1.6E+02 0.0035 35.7 32.0 111 714-824 303-465 (608)
366 PF07720 TPR_3: Tetratricopept 78.8 5.5 0.00012 29.1 4.9 30 515-544 4-35 (36)
367 PF07079 DUF1347: Protein of u 78.8 1.3E+02 0.0029 34.7 20.6 57 486-545 469-525 (549)
368 KOG3364 Membrane protein invol 78.7 9.3 0.0002 36.7 7.6 68 480-547 33-106 (149)
369 KOG2396 HAT (Half-A-TPR) repea 78.7 14 0.0003 42.6 10.3 83 591-673 92-175 (568)
370 COG4941 Predicted RNA polymera 78.2 42 0.0009 37.1 13.2 129 493-647 270-408 (415)
371 COG3629 DnrI DNA-binding trans 76.6 18 0.00039 39.2 10.1 88 606-707 155-242 (280)
372 TIGR02561 HrpB1_HrpK type III 76.6 53 0.0012 32.2 12.3 56 616-671 22-77 (153)
373 KOG4814 Uncharacterized conser 76.0 25 0.00054 41.8 11.5 100 517-668 359-458 (872)
374 COG3629 DnrI DNA-binding trans 75.8 15 0.00032 39.8 9.3 46 462-507 170-215 (280)
375 KOG1463 26S proteasome regulat 75.8 73 0.0016 35.3 14.3 106 718-827 215-337 (411)
376 KOG1724 SCF ubiquitin ligase, 75.6 14 0.00031 36.6 8.4 91 189-282 13-127 (162)
377 KOG0546 HSP90 co-chaperone CPR 75.5 3.9 8.5E-05 45.0 4.8 68 480-547 276-344 (372)
378 PF09613 HrpB1_HrpK: Bacterial 75.5 16 0.00034 36.2 8.5 79 592-671 32-110 (160)
379 PRK13184 pknD serine/threonine 75.0 16 0.00034 46.2 10.5 72 599-670 547-623 (932)
380 KOG1464 COP9 signalosome, subu 74.7 83 0.0018 33.8 14.0 49 492-540 40-93 (440)
381 PF10373 EST1_DNA_bind: Est1 D 74.3 11 0.00023 40.3 8.0 61 464-524 1-62 (278)
382 PF04910 Tcf25: Transcriptiona 73.4 1.7E+02 0.0036 33.1 18.8 76 596-671 32-136 (360)
383 KOG2041 WD40 repeat protein [G 73.2 2.2E+02 0.0048 34.5 18.5 84 638-739 796-879 (1189)
384 cd02683 MIT_1 MIT: domain cont 72.9 13 0.00028 32.1 6.5 29 713-741 7-35 (77)
385 KOG1914 mRNA cleavage and poly 72.8 1.5E+02 0.0032 35.0 16.4 147 594-741 10-166 (656)
386 KOG4151 Myosin assembly protei 72.3 7.6 0.00016 46.9 6.5 131 643-812 58-195 (748)
387 KOG3807 Predicted membrane pro 71.0 1.2E+02 0.0025 33.6 14.4 95 717-812 280-399 (556)
388 cd02682 MIT_AAA_Arch MIT: doma 70.6 22 0.00047 30.6 7.2 22 464-485 32-53 (75)
389 PF10373 EST1_DNA_bind: Est1 D 69.2 13 0.00029 39.6 7.2 54 623-676 1-55 (278)
390 KOG2300 Uncharacterized conser 68.7 2.4E+02 0.0051 33.0 37.5 167 609-780 328-524 (629)
391 PF11207 DUF2989: Protein of u 68.0 1.5E+02 0.0032 30.6 13.8 54 477-531 139-197 (203)
392 PF10255 Paf67: RNA polymerase 67.0 15 0.00032 42.0 7.1 69 417-507 124-192 (404)
393 PHA02537 M terminase endonucle 66.8 35 0.00076 35.9 9.4 33 712-744 169-210 (230)
394 PF04053 Coatomer_WDAD: Coatom 65.7 2.3E+02 0.0051 32.9 16.8 46 603-656 346-391 (443)
395 PHA03098 kelch-like protein; P 64.6 4.4 9.5E-05 48.1 2.6 88 250-346 105-200 (534)
396 PF07707 BACK: BTB And C-termi 64.1 13 0.00027 33.2 5.0 45 289-333 2-54 (103)
397 cd02679 MIT_spastin MIT: domai 63.5 11 0.00024 32.7 4.1 35 493-541 3-37 (79)
398 COG4455 ImpE Protein of avirul 61.9 25 0.00054 36.6 6.9 59 613-671 10-68 (273)
399 TIGR02561 HrpB1_HrpK type III 61.5 43 0.00093 32.8 8.2 66 462-527 27-93 (153)
400 PF15015 NYD-SP12_N: Spermatog 60.7 24 0.00052 39.9 7.1 107 390-506 183-289 (569)
401 PF04212 MIT: MIT (microtubule 59.8 13 0.00029 31.0 4.0 30 712-741 5-34 (69)
402 COG4455 ImpE Protein of avirul 57.5 2E+02 0.0043 30.2 12.4 60 488-547 10-70 (273)
403 cd02679 MIT_spastin MIT: domai 57.3 15 0.00032 31.9 3.9 33 619-666 4-36 (79)
404 PF09670 Cas_Cas02710: CRISPR- 57.0 1.3E+02 0.0029 34.1 12.6 62 606-667 133-198 (379)
405 KOG2396 HAT (Half-A-TPR) repea 56.8 72 0.0016 37.1 10.1 108 435-545 91-204 (568)
406 KOG3783 Uncharacterized conser 55.8 4.1E+02 0.0089 31.4 20.9 66 712-781 449-524 (546)
407 KOG1538 Uncharacterized conser 55.4 2.5E+02 0.0054 33.9 14.2 77 468-551 736-812 (1081)
408 PHA02537 M terminase endonucle 55.3 57 0.0012 34.3 8.5 24 488-511 92-115 (230)
409 PF09670 Cas_Cas02710: CRISPR- 54.8 67 0.0015 36.5 9.8 122 518-667 137-270 (379)
410 KOG2114 Vacuolar assembly/sort 53.1 69 0.0015 39.4 9.6 57 614-671 344-402 (933)
411 KOG2581 26S proteasome regulat 52.9 3E+02 0.0064 31.5 13.7 58 480-537 125-194 (493)
412 COG3014 Uncharacterized protei 52.6 2.8E+02 0.0061 30.9 13.2 49 634-682 118-169 (449)
413 KOG0890 Protein kinase of the 51.8 8.8E+02 0.019 34.1 31.0 142 600-748 1666-1840(2382)
414 cd02683 MIT_1 MIT: domain cont 51.6 63 0.0014 27.9 6.8 29 383-411 6-34 (77)
415 cd02680 MIT_calpain7_2 MIT: do 50.0 26 0.00056 30.2 4.1 18 524-541 18-35 (75)
416 PF04212 MIT: MIT (microtubule 49.6 31 0.00067 28.8 4.6 31 381-411 3-33 (69)
417 KOG2422 Uncharacterized conser 49.0 5.4E+02 0.012 30.8 16.5 148 398-545 253-452 (665)
418 COG5159 RPN6 26S proteasome re 48.6 4E+02 0.0086 29.1 14.8 66 601-666 162-234 (421)
419 COG3947 Response regulator con 48.3 55 0.0012 35.6 7.1 55 483-537 283-338 (361)
420 cd02681 MIT_calpain7_1 MIT: do 47.9 27 0.00059 30.1 4.0 28 714-741 8-35 (76)
421 COG1747 Uncharacterized N-term 47.5 5.4E+02 0.012 30.4 15.9 142 594-744 90-237 (711)
422 KOG2422 Uncharacterized conser 47.3 5.7E+02 0.012 30.6 17.4 169 616-806 250-451 (665)
423 smart00745 MIT Microtubule Int 46.9 28 0.0006 29.6 4.0 28 714-741 10-37 (77)
424 PF01466 Skp1: Skp1 family, di 46.8 65 0.0014 27.7 6.3 43 250-292 11-55 (78)
425 COG5536 BET4 Protein prenyltra 46.7 3.6E+02 0.0079 29.3 12.7 45 620-664 209-257 (328)
426 PF11846 DUF3366: Domain of un 45.7 51 0.0011 33.4 6.4 52 494-545 126-177 (193)
427 PF12739 TRAPPC-Trs85: ER-Golg 45.6 4.6E+02 0.0099 30.1 14.9 24 718-741 376-399 (414)
428 KOG4814 Uncharacterized conser 45.4 1.4E+02 0.003 35.9 10.2 99 639-771 355-455 (872)
429 COG5191 Uncharacterized conser 44.8 63 0.0014 35.4 6.9 80 468-547 96-177 (435)
430 KOG1778 CREB binding protein/P 44.4 16 0.00034 40.4 2.5 121 184-308 29-151 (319)
431 COG5191 Uncharacterized conser 43.8 28 0.00061 38.0 4.1 80 593-672 96-176 (435)
432 PF08238 Sel1: Sel1 repeat; I 43.7 44 0.00094 23.8 4.1 30 384-413 2-38 (39)
433 TIGR03504 FimV_Cterm FimV C-te 43.1 38 0.00082 26.0 3.7 29 516-545 3-31 (44)
434 cd02680 MIT_calpain7_2 MIT: do 42.5 30 0.00065 29.8 3.4 27 715-741 9-35 (75)
435 PF10255 Paf67: RNA polymerase 42.3 48 0.001 37.9 6.0 59 481-540 124-192 (404)
436 cd02681 MIT_calpain7_1 MIT: do 42.2 44 0.00095 28.8 4.4 30 382-411 5-34 (76)
437 KOG2581 26S proteasome regulat 42.1 2.5E+02 0.0054 32.1 11.1 44 789-833 335-378 (493)
438 KOG2063 Vacuolar assembly/sort 41.4 97 0.0021 38.9 8.8 28 604-631 684-711 (877)
439 cd02684 MIT_2 MIT: domain cont 41.1 38 0.00082 29.1 3.8 28 714-741 8-35 (75)
440 KOG4279 Serine/threonine prote 40.8 1.3E+02 0.0028 36.7 9.1 21 617-637 379-399 (1226)
441 COG3014 Uncharacterized protei 40.6 5.7E+02 0.012 28.7 17.3 29 480-508 126-154 (449)
442 TIGR02710 CRISPR-associated pr 40.4 2.1E+02 0.0047 32.5 10.7 21 647-667 255-275 (380)
443 KOG2114 Vacuolar assembly/sort 40.1 4.6E+02 0.01 32.7 13.7 17 645-661 497-513 (933)
444 PF07707 BACK: BTB And C-termi 39.5 8.4 0.00018 34.3 -0.4 26 256-281 2-27 (103)
445 KOG3807 Predicted membrane pro 39.4 5.8E+02 0.013 28.4 20.4 102 432-543 201-306 (556)
446 smart00671 SEL1 Sel1-like repe 39.4 46 0.001 23.1 3.6 29 384-412 2-34 (36)
447 smart00386 HAT HAT (Half-A-TPR 39.2 72 0.0016 21.2 4.5 28 618-645 1-28 (33)
448 PF12854 PPR_1: PPR repeat 38.6 67 0.0014 22.8 4.2 28 509-536 4-31 (34)
449 KOG0276 Vesicle coat complex C 38.6 1.8E+02 0.0039 34.8 9.7 15 647-661 730-744 (794)
450 COG3947 Response regulator con 38.4 92 0.002 33.9 6.9 58 608-665 283-340 (361)
451 PF12854 PPR_1: PPR repeat 38.1 59 0.0013 23.1 3.9 27 478-504 6-32 (34)
452 cd02656 MIT MIT: domain contai 37.5 48 0.001 28.1 4.0 28 714-741 8-35 (75)
453 COG5107 RNA14 Pre-mRNA 3'-end 37.0 6.2E+02 0.014 29.5 13.3 231 468-730 291-530 (660)
454 PF01239 PPTA: Protein prenylt 37.0 73 0.0016 21.9 4.1 26 466-491 4-29 (31)
455 KOG4014 Uncharacterized conser 36.6 4.9E+02 0.011 26.7 12.8 119 617-756 86-212 (248)
456 cd02678 MIT_VPS4 MIT: domain c 36.6 50 0.0011 28.1 3.9 28 714-741 8-35 (75)
457 KOG4521 Nuclear pore complex, 34.6 2E+02 0.0043 37.0 9.7 138 603-760 919-1070(1480)
458 PF13041 PPR_2: PPR repeat fam 34.5 1.3E+02 0.0028 22.9 5.7 38 479-516 3-42 (50)
459 KOG0276 Vesicle coat complex C 33.3 3.6E+02 0.0079 32.4 11.1 54 713-766 667-743 (794)
460 PF11846 DUF3366: Domain of un 32.8 1.2E+02 0.0026 30.6 6.8 48 621-669 128-175 (193)
461 PF14863 Alkyl_sulf_dimr: Alky 32.3 96 0.0021 30.1 5.5 52 605-656 71-122 (141)
462 KOG4151 Myosin assembly protei 32.2 73 0.0016 38.9 5.6 119 496-641 44-164 (748)
463 KOG1914 mRNA cleavage and poly 32.0 9.5E+02 0.021 28.7 30.7 184 626-811 267-474 (656)
464 PF14863 Alkyl_sulf_dimr: Alky 31.9 1.6E+02 0.0034 28.6 6.9 54 636-689 68-122 (141)
465 COG5201 SKP1 SCF ubiquitin lig 31.8 1.8E+02 0.0038 27.7 6.8 59 184-247 4-63 (158)
466 PF01239 PPTA: Protein prenylt 31.5 1.1E+02 0.0024 21.0 4.3 27 624-650 3-29 (31)
467 TIGR03504 FimV_Cterm FimV C-te 31.5 1.3E+02 0.0028 23.0 5.0 24 717-740 4-27 (44)
468 PF01535 PPR: PPR repeat; Int 31.3 62 0.0013 21.4 3.0 27 714-740 2-28 (31)
469 KOG3342 Signal peptidase I [In 31.3 46 0.00099 32.4 3.0 16 184-199 84-100 (180)
470 cd02677 MIT_SNX15 MIT: domain 30.9 61 0.0013 27.8 3.5 27 715-741 9-35 (75)
471 COG1747 Uncharacterized N-term 30.4 9.9E+02 0.021 28.4 17.4 179 468-670 89-291 (711)
472 smart00745 MIT Microtubule Int 30.4 90 0.002 26.4 4.6 31 381-411 6-36 (77)
473 KOG4279 Serine/threonine prote 29.5 2.7E+02 0.0058 34.2 9.3 133 617-776 256-398 (1226)
474 cd02678 MIT_VPS4 MIT: domain c 28.2 99 0.0022 26.3 4.4 30 382-411 5-34 (75)
475 cd02684 MIT_2 MIT: domain cont 28.1 1E+02 0.0022 26.4 4.4 31 381-411 4-34 (75)
476 PF10932 DUF2783: Protein of u 28.0 1.5E+02 0.0032 24.4 4.9 52 57-112 5-59 (60)
477 PF13041 PPR_2: PPR repeat fam 27.8 2.3E+02 0.005 21.5 6.1 31 638-668 3-33 (50)
478 KOG0687 26S proteasome regulat 27.4 4.6E+02 0.01 29.2 10.0 96 416-540 105-202 (393)
479 PF09205 DUF1955: Domain of un 27.2 3.8E+02 0.0083 26.0 8.3 63 604-666 85-148 (161)
480 cd02656 MIT MIT: domain contai 27.1 1.1E+02 0.0024 25.8 4.6 30 382-411 5-34 (75)
481 PF11817 Foie-gras_1: Foie gra 26.5 2.5E+02 0.0053 29.8 8.1 76 690-765 153-239 (247)
482 KOG1538 Uncharacterized conser 26.5 1.3E+03 0.027 28.3 15.8 50 614-666 783-832 (1081)
483 TIGR02710 CRISPR-associated pr 26.3 6.8E+02 0.015 28.5 11.7 54 610-663 136-196 (380)
484 KOG2715 Uncharacterized conser 26.3 1.3E+02 0.0028 29.9 5.2 91 183-276 22-116 (210)
485 smart00875 BACK BTB And C-term 25.2 20 0.00043 31.5 -0.5 23 257-279 3-25 (101)
486 smart00386 HAT HAT (Half-A-TPR 24.9 1.6E+02 0.0034 19.4 4.2 27 758-784 1-27 (33)
487 PF05053 Menin: Menin; InterP 24.4 1.5E+02 0.0032 35.1 6.1 44 463-506 297-345 (618)
488 smart00875 BACK BTB And C-term 24.3 1E+02 0.0023 26.7 4.1 45 290-334 3-55 (101)
489 PHA02790 Kelch-like protein; P 24.2 59 0.0013 38.1 3.1 43 235-281 109-151 (480)
490 PF05053 Menin: Menin; InterP 23.9 3.5E+02 0.0076 32.2 8.9 59 383-441 277-344 (618)
491 TIGR00756 PPR pentatricopeptid 23.8 1.1E+02 0.0024 20.5 3.3 27 714-740 2-28 (35)
492 PF03097 BRO1: BRO1-like domai 23.6 1E+03 0.022 26.7 12.8 31 380-410 104-143 (377)
493 PF10938 YfdX: YfdX protein; 23.5 4.3E+02 0.0094 26.0 8.5 61 480-540 76-145 (155)
494 PRK09687 putative lyase; Provi 22.2 1E+03 0.022 25.7 20.8 191 603-806 67-266 (280)
495 KOG4521 Nuclear pore complex, 21.9 9.1E+02 0.02 31.5 12.2 27 515-541 923-949 (1480)
496 cd02677 MIT_SNX15 MIT: domain 21.0 1.6E+02 0.0035 25.3 4.3 30 382-411 5-34 (75)
497 smart00101 14_3_3 14-3-3 homol 20.3 1.1E+03 0.023 25.2 21.4 56 482-537 4-64 (244)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-48 Score=424.65 Aligned_cols=376 Identities=17% Similarity=0.115 Sum_probs=344.5
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh
Q 003249 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (836)
Q Consensus 380 ~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~--~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~ 457 (836)
++-+++|-|+|+++-++|++++|+..|+.+|+++| .++|.++|.++..+|+...|..+|..++.++|.+..+....|.
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 45678999999999999999999999999999976 4699999999999999999999999999999965444433332
Q ss_pred c----CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHH
Q 003249 458 Y----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAAL 532 (836)
Q Consensus 458 ~----~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai 532 (836)
+ |+..||.++|-+||+.+|.++-+|.++|.++..+|+...||..|.+|++++|+ +++|.|+|.+|.+++.+++|+
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 1 33399999999999999999999999999999999999999999999999999 699999999999999999999
Q ss_pred HHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHH
Q 003249 533 CDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 612 (836)
Q Consensus 533 ~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl 612 (836)
.+|.+|+.+.|+++.++++++.. |-..++.+. ++..|.++|+++|+..++|.|+|.
T Consensus 273 s~Y~rAl~lrpn~A~a~gNla~i------YyeqG~ldl------------------AI~~Ykral~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 273 SCYLRALNLRPNHAVAHGNLACI------YYEQGLLDL------------------AIDTYKRALELQPNFPDAYNNLAN 328 (966)
T ss_pred HHHHHHHhcCCcchhhccceEEE------EeccccHHH------------------HHHHHHHHHhcCCCchHHHhHHHH
Confidence 99999999999999999987642 222222222 488999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChh
Q 003249 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (836)
Q Consensus 613 ~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~ 692 (836)
++...|+..||.++|++|+.+.|+++++++|+|.++.++|.+++|+..|.+|++..|.+
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~--------------------- 387 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF--------------------- 387 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh---------------------
Confidence 99999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHH
Q 003249 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 770 (836)
Q Consensus 693 ~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~ka 770 (836)
+.+++|||.+|.++|++++|+.||+.||.|+|+ .|+.|+|.+|...|+.++|+..|++|
T Consensus 388 -------------------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 388 -------------------AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred -------------------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 458999999999999999999999999999986 78999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHH----ccCHHHHHHHHHHhHhcCCCCcccchhhHHHHH
Q 003249 771 IKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAGLI 819 (836)
Q Consensus 771 ie~~p~~a~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~ 819 (836)
|.++|..|+|+.|++. -|+..+||..|.+|++|+|+.+.||-+|+-++.
T Consensus 449 I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 449 IQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 9999999999999953 388999999999999999999999999987764
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-45 Score=398.05 Aligned_cols=408 Identities=15% Similarity=0.096 Sum_probs=356.5
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----C
Q 003249 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----C 459 (836)
Q Consensus 386 ~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~ 459 (836)
...++.-.++.|+|++|++.....-.-+|.. ...-++.++++..+++.....-..++...|..+++|.+.+.+ +
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 3455666789999999999887766555543 344566678888888887777777888777655555444322 3
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAI 538 (836)
Q Consensus 460 ~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~a 538 (836)
..++|+..|..+|+++|++.++|.++|.+|..+|+.+.|...|..||+++|+. .+....|.++..+|+.++|-.+|.+|
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 33999999999999999999999999999999999999999999999999985 55677999999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003249 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (836)
Q Consensus 539 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~ 618 (836)
|+.+|.++-++.+++... ....+- | .+|..|++++.+||+...+|+|+|.+|...+
T Consensus 211 i~~qp~fAiawsnLg~~f-----~~~Gei------~-------------~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVF-----NAQGEI------W-------------LAIQHYEEAVKLDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred HhhCCceeeeehhcchHH-----hhcchH------H-------------HHHHHHHHhhcCCCcchHHHhhHHHHHHHHh
Confidence 999999988777765421 111111 1 2477899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHHH
Q 003249 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSL 697 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~ 697 (836)
.++.|+.+|.+|+.+.|+++.++-|+|.||+++|..|-||..|++||+++|+| +||.+.|++|.+.| +...+...
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G----~V~ea~~c 342 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG----SVTEAVDC 342 (966)
T ss_pred cchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc----chHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 68889999998875 67778888
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 003249 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (836)
Q Consensus 698 l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p 775 (836)
|.+|+...+.. +++.+|||++|.++|++++|+..|.+||++.|. .||.|||.+|..+|++++|+..|+.||.|.|
T Consensus 343 YnkaL~l~p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 343 YNKALRLCPNH---ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHhCCcc---HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 99999887765 799999999999999999999999999999775 7899999999999999999999999999999
Q ss_pred CCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhhh
Q 003249 776 NNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNL 824 (836)
Q Consensus 776 ~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~~ 824 (836)
+.|+||.|+| +.||.++|+.+|++||.+||..+.|..+-|.++--.||-
T Consensus 420 ~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 420 TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI 472 (966)
T ss_pred hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence 9999999995 569999999999999999999999999999998877764
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=7.4e-33 Score=331.13 Aligned_cols=361 Identities=14% Similarity=0.067 Sum_probs=277.6
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccch-hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh---
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL--- 457 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~-~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~--- 457 (836)
.+..+.++|..++..|+|++|+..|++||++.|. ..+.++|.++..+|++++|+..+++++..+|+...++..+|.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3567788899999999999999999999988653 457788888999999999999999999999888888877764
Q ss_pred -cCChhhHHHHHHHHHhcCCCCh------------------------------HHHHHHHHHH-----------------
Q 003249 458 -YCEGDKRWEDLDKATALDPTLS------------------------------YPYMYRASSL----------------- 489 (836)
Q Consensus 458 -~~~~~eAi~d~~kAi~ldP~~~------------------------------~ay~~rg~~l----------------- 489 (836)
.++.++|+.+|.++..+++.+. ..+..+|..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 3566888888876665544321 1111222211
Q ss_pred ----------------H---hcCCHHHHHHHHHHHHhcC---CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 003249 490 ----------------M---TKQNVEAALAEINRILGFK---LA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (836)
Q Consensus 490 ----------------~---~~g~~~eAi~~~~kai~l~---P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~ 546 (836)
. ..+++++|+..|+++++++ |+ ..++.++|.++..+|++++|+.+|+++++++|++.
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 1 1257888888888888764 44 35577788888888888888888888888888876
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003249 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (836)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~ 626 (836)
..+..++. ++...++++.| +..+.++++.+|+++.+|+.+|.++..+|++++|+.+
T Consensus 366 ~~~~~la~------~~~~~g~~~eA------------------~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 366 QSYIKRAS------MNLELGDPDKA------------------EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred HHHHHHHH------HHHHCCCHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 65544332 22233444444 6677788888888888888888888888888888888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCc
Q 003249 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (836)
Q Consensus 627 ~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~ 706 (836)
|+++++++|++..++.++|.+++.+|++++|+..|++++++.|+.
T Consensus 422 ~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~----------------------------------- 466 (615)
T TIGR00990 422 YQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA----------------------------------- 466 (615)
T ss_pred HHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------------------------------
Confidence 888888888888888888888888888888888888888776654
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hH------HhhHHHHHH-hcCCHHHHHHHHHHHHHhcCCC
Q 003249 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RA------HQGLARVHF-LKNNKTTAYEEMTKLIKKARNN 777 (836)
Q Consensus 707 ~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A------~~~la~~~~-~~g~~~~A~~~~~kaie~~p~~ 777 (836)
+.+++++|.+|.++|++++|+.+|++|+++.|. .. ..+.+.+++ .+|++++|+..++++++++|++
T Consensus 467 -----~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 467 -----PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -----hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 467899999999999999999999999998653 12 233344444 4699999999999999999999
Q ss_pred HHHHHHHH----HccCHHHHHHHHHHhHhcCCC
Q 003249 778 ASAYEKRS----EYCDRELTRADLEMVTQLDPL 806 (836)
Q Consensus 778 a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~ 806 (836)
..++..++ +.|++++|+..|++|+++.++
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 99998885 458999999999999999886
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-31 Score=328.13 Aligned_cols=412 Identities=18% Similarity=0.125 Sum_probs=366.2
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh--
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~-- 457 (836)
.+..++.+|.++...|++++|+..|+++++.+|. .++..+|.++...|++++|...+.+++..+|+...++...+.
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY 543 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3467889999999999999999999999987654 578889999999999999999999999999987777766653
Q ss_pred --cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 003249 458 --YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (836)
Q Consensus 458 --~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d 534 (836)
.+..++|+..++++++.+|++...+..++.++...|++++|+..++++++..|+ +..+..+|.++...|++++|+..
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 256699999999999999999999999999999999999999999999999996 57788899999999999999999
Q ss_pred HHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003249 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 614 (836)
Q Consensus 535 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l 614 (836)
|+++++++|++...+..++ ..+...+.++.| +..+.++++.+|++..+++.++.++
T Consensus 624 ~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 624 FKKLLALQPDSALALLLLA------DAYAVMKNYAKA------------------ITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHhCCCChHHHHHHH------HHHHHcCCHHHH------------------HHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999876554433 333444555555 7788999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHH
Q 003249 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTV 694 (836)
Q Consensus 615 ~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~ 694 (836)
...|++++|++.++.+.+..|+++.++..+|.++...|++++|++.|+++++..|+...++..+..+...| ....+
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A 755 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASG----NTAEA 755 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCC----CHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877777776665543 56677
Q ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHH
Q 003249 695 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (836)
Q Consensus 695 i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie 772 (836)
+..++++++..++. ..+++++|.+|...|++++|+..|+++++..|. .++.++|.++...|+ .+|+..++++++
T Consensus 756 ~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 756 VKTLEAWLKTHPND---AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 88888888866554 689999999999999999999999999998664 678999999999999 889999999999
Q ss_pred hcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhhhh
Q 003249 773 KARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNLH 825 (836)
Q Consensus 773 ~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~~~ 825 (836)
+.|+++..+..++ ..|++++|+..|++|++++|.+...|.+.|.++...|+..
T Consensus 832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA 888 (899)
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Confidence 9999999998885 4599999999999999999999999999999999988754
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-30 Score=318.09 Aligned_cols=430 Identities=18% Similarity=0.116 Sum_probs=348.9
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh
Q 003249 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (836)
Q Consensus 380 ~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~ 457 (836)
...+..+..+|.++...|++++|+..|+++++.+|. .++..+|.++...|++++|...+++++..+|+...++..++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 445678899999999999999999999999988654 578899999999999999999999999999988887777764
Q ss_pred c----CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHH
Q 003249 458 Y----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAAL 532 (836)
Q Consensus 458 ~----~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai 532 (836)
. ++.++|+..|+++++++|+++..+..+|.++...|++++|...++++++..|+ +..++.+|.++...|++++|+
T Consensus 202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 281 (899)
T TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence 3 56699999999999999999999999999999999999999999999999997 567788999999999999999
Q ss_pred HHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHh------------------hhhccCcccccchHHHHH
Q 003249 533 CDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQ------------------LYDRWSSVDDIGSLSVIY 594 (836)
Q Consensus 533 ~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~------------------~~~~~~~~~~~~aL~~~~ 594 (836)
..|+++++.+|++...+...+ ..+...++++.|..... .+...+.. ..++..+.
T Consensus 282 ~~~~~~l~~~~~~~~~~~~~~------~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~ 353 (899)
T TIGR02917 282 ETLQDALKSAPEYLPALLLAG------ASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRV--DEAIATLS 353 (899)
T ss_pred HHHHHHHHhCCCchhHHHHHH------HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCH--HHHHHHHH
Confidence 999999999999865443332 22233344444421111 11111111 12566778
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HH
Q 003249 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EA 673 (836)
Q Consensus 595 ~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a 673 (836)
++++.+|.++..+...|.++.+.|++++|++.|+++++.+|+++.++..+|.++..+|++++|+..|++++++.|+. ..
T Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 433 (899)
T TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433 (899)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence 88888888888888888888888888889988888888888888888888888888889988988888888888765 33
Q ss_pred HHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHH
Q 003249 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLA 751 (836)
Q Consensus 674 ~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la 751 (836)
.+..+..+ +..+....++..+++.++..++. +.+++.+|.+|...|++++|+.+|+++++++|. .++.++|
T Consensus 434 ~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 506 (899)
T TIGR02917 434 DLLLILSY----LRSGQFDKALAAAKKLEKKQPDN---ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLA 506 (899)
T ss_pred HHHHHHHH----HhcCCHHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 33333333 23445566677777776654443 578999999999999999999999999988654 6788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH----ccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhhh
Q 003249 752 RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNL 824 (836)
Q Consensus 752 ~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~~ 824 (836)
.++...|++++|++.|+++++.+|++..++..++. .|+.++|+..++++++.+|....++...|.++...|+.
T Consensus 507 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 507 RIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999888743 48889999999999999998888888888777766643
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=1.6e-30 Score=311.16 Aligned_cols=367 Identities=14% Similarity=0.081 Sum_probs=298.9
Q ss_pred HHHHhhhccCCCChhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccchh--hHhhHHHHHHh
Q 003249 350 LLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYI 427 (836)
Q Consensus 350 lL~~V~~~~~~~s~~~v~LLe~a~~ca~~~~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~ 427 (836)
-++...+... ....++..+..+.++.+. +..|.++|.++..+|++++|++.|++||+++|.+ ++..+|.++..
T Consensus 132 ~~G~~~~~~~-~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 132 EKGNKAYRNK-DFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4555555544 455666677777665432 4579999999999999999999999999997654 78999999999
Q ss_pred cCCHHHHHHHHHHhHhccC------------------------------C------------------------------
Q 003249 428 KGHKLWAYEKLNSVISSVT------------------------------P------------------------------ 447 (836)
Q Consensus 428 ~G~~~~A~~~~~~ai~~~~------------------------------~------------------------------ 447 (836)
+|++++|+..+..+....+ .
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999887765432221 1
Q ss_pred ---chHHHHHhhh-------cCChhhHHHHHHHHHhc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hH
Q 003249 448 ---LGWMYQERSL-------YCEGDKRWEDLDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE 513 (836)
Q Consensus 448 ---~~~ay~~r~~-------~~~~~eAi~d~~kAi~l---dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~ 513 (836)
.+.++...+. .+.+++|+..|++++++ +|+.+.+|.++|.++..+|++++|+..|+++++++|+ ..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 1111111110 02347899999999987 5889999999999999999999999999999999997 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHH
Q 003249 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (836)
Q Consensus 514 ~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~ 593 (836)
++..+|.++..+|++++|+.+|+++++++|++...+..++ .++...++++.| +..+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg------~~~~~~g~~~~A------------------~~~~ 422 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA------QLHFIKGEFAQA------------------GKDY 422 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH------HHHHHcCCHHHH------------------HHHH
Confidence 8889999999999999999999999999999987665544 233444555555 7889
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHH
Q 003249 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (836)
Q Consensus 594 ~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a 673 (836)
.++++++|++..+|+++|.++.++|++++|+..|+++++..|+++++++++|.++.++|++++|++.|++|++++|....
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP 502 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886521
Q ss_pred HHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHH-HHHHhcCCHHHHHHHHHHHHcCCch--hHHhhH
Q 003249 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG-SVYVDCGQLDLAADCYSNALKIRHT--RAHQGL 750 (836)
Q Consensus 674 ~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG-~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~l 750 (836)
.+.. ...+.+.+ ..+...|++++|+..|++|++++|. .++.++
T Consensus 503 ~~~~----------------------------------~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~l 548 (615)
T TIGR00990 503 MYMN----------------------------------VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATM 548 (615)
T ss_pred cccc----------------------------------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 1000 11233333 3444579999999999999999765 578999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCHH
Q 003249 751 ARVHFLKNNKTTAYEEMTKLIKKARNNAS 779 (836)
Q Consensus 751 a~~~~~~g~~~~A~~~~~kaie~~p~~a~ 779 (836)
|+++..+|++++|+..|++++++.+...+
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999987655
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=7.8e-30 Score=324.39 Aligned_cols=446 Identities=15% Similarity=0.051 Sum_probs=303.0
Q ss_pred HHHHHHhhhccCCCChhHHH-HHHHhhhhhhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccchhh---------
Q 003249 348 YCLLSEVAMNLDPRSDKTVC-FLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--------- 417 (836)
Q Consensus 348 ~~lL~~V~~~~~~~s~~~v~-LLe~a~~ca~~~~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a--------- 417 (836)
..++.++++-........+. .|.++...... .+.++..++.+++..|++++|+..+++++++.|...
T Consensus 29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~---~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 29 QQLLEQVRLGEATHREDLVRQSLYRLELIDPN---NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHccCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 33666666655433333333 66666655433 356778888888899999999999998888866542
Q ss_pred ---------HhhHHHHHHhcCCHHHHHHHHHHhHhccCCchH---HHHHh-h-hcCChhhHHHHHHHHHhcCCCChHHHH
Q 003249 418 ---------IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW---MYQER-S-LYCEGDKRWEDLDKATALDPTLSYPYM 483 (836)
Q Consensus 418 ---------~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~---ay~~r-~-~~~~~~eAi~d~~kAi~ldP~~~~ay~ 483 (836)
...+|+++...|++++|+..|.+++...|+... .|... . ..+..++|+..|+++++.+|+++.++.
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~ 185 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRN 185 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 234566788889999999999998888776542 12221 1 125558899999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCh----------------------------------H----H-----------
Q 003249 484 YRASSLMTKQNVEAALAEINRILGFKLAL----------------------------------E----C----------- 514 (836)
Q Consensus 484 ~rg~~l~~~g~~~eAi~~~~kai~l~P~~----------------------------------~----~----------- 514 (836)
.+|.++...|++++|+..++++++..+.. . +
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 99999999999999999988886543210 0 0
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccc
Q 003249 515 ------LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 588 (836)
Q Consensus 515 ------~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 588 (836)
...+|.++...|++++|+..|+++++++|++..++..++ .++...+++++|
T Consensus 266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg------~~~~~~g~~~eA----------------- 322 (1157)
T PRK11447 266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALG------QAYSQQGDRARA----------------- 322 (1157)
T ss_pred cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH------HHHHHcCCHHHH-----------------
Confidence 012367778889999999999999999998877665543 333444555544
Q ss_pred hHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH
Q 003249 589 SLSVIYQMLESDAPKGV--------------LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC 654 (836)
Q Consensus 589 aL~~~~~al~~~P~~~~--------------~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~ 654 (836)
+..+.++++.+|++.. ....+|.++.+.|++++|+..|+++++++|+++.+++.+|.++..+|++
T Consensus 323 -~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~ 401 (1157)
T PRK11447 323 -VAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDY 401 (1157)
T ss_pred -HHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 5566667777766532 1234566667777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcccchH-HHHHHHHHh--------------------------------------hccccCCCChhHHH
Q 003249 655 EEGLRKAEESIQMKRSFE-AFFLKAYAL--------------------------------------ADSSQDSSCSSTVV 695 (836)
Q Consensus 655 eeAl~~~~~Ai~l~p~~~-a~~~~a~aL--------------------------------------~~~~l~~~~~~~~i 695 (836)
++|++.|+++++++|++. ++...+..+ ++.....+....++
T Consensus 402 ~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 402 AAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 777777777777777653 332222211 01111234455566
Q ss_pred HHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-------------------------------
Q 003249 696 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------------------------------- 744 (836)
Q Consensus 696 ~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~------------------------------- 744 (836)
..+++|++..|+. ++++.++|.+|..+|++++|+..|+++++++|.
T Consensus 482 ~~~~~Al~~~P~~---~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~ 558 (1157)
T PRK11447 482 ELQRQRLALDPGS---VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA 558 (1157)
T ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch
Confidence 6666776665554 466777777777777777777777777665432
Q ss_pred ---------------------------------------------hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHH
Q 003249 745 ---------------------------------------------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 779 (836)
Q Consensus 745 ---------------------------------------------~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~ 779 (836)
.++..+|.++..+|++++|++.|.++++++|+++.
T Consensus 559 ~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 559 QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 12345666777778888888888888888888888
Q ss_pred HHHHHH----HccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhh
Q 003249 780 AYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLN 823 (836)
Q Consensus 780 Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~ 823 (836)
++.+++ ..|++++|+..|+++++++|.+...+...|.++...|+
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC
Confidence 877774 34778888888888888888877777777777776554
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=6.6e-29 Score=315.88 Aligned_cols=440 Identities=14% Similarity=0.037 Sum_probs=301.1
Q ss_pred hhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccchh-----h--------------------
Q 003249 363 DKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY-----S-------------------- 417 (836)
Q Consensus 363 ~~~v~LLe~a~~ca~~~~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~-----a-------------------- 417 (836)
..++..++++.+..+ ..+.++..+|.++...|++++|+..|+++++..+.. .
T Consensus 164 ~~A~~~L~~ll~~~P---~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~ 240 (1157)
T PRK11447 164 PEAINQLQRLNADYP---GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQK 240 (1157)
T ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHH
Confidence 344446666555422 335678899999999999999999999986532100 0
Q ss_pred -------------------------------HhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----CChh
Q 003249 418 -------------------------------IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGD 462 (836)
Q Consensus 418 -------------------------------~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~~~~ 462 (836)
...+|.++...|++++|+..+.+++..+|+.+.++...|.. ++.+
T Consensus 241 ~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 241 YLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 00225667788999999999999999999887777776642 5568
Q ss_pred hHHHHHHHHHhcCCCChHH--------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCC
Q 003249 463 KRWEDLDKATALDPTLSYP--------------YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (836)
Q Consensus 463 eAi~d~~kAi~ldP~~~~a--------------y~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~ 527 (836)
+|+..|++|++++|++... ...+|.++...|++++|+..|+++++++|+ ..++..+|.++..+|+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999987532 235588888999999999999999999996 5677788999999999
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhcc-------------------------C
Q 003249 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRW-------------------------S 582 (836)
Q Consensus 528 ~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~-------------------------~ 582 (836)
+++|++.|+++++++|++..++..++. ++. .+.+++|..+...+... .
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~------l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLAN------LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH------HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999999998765443332 222 23456665444321100 0
Q ss_pred cccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 583 SVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (836)
Q Consensus 583 ~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~ 662 (836)
..+..+++..+.++++++|+++.+++.+|.++.++|++++|+..++++++.+|+++++++.+|..+..+|++++|++.++
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 01111245555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhcccch--HH---------HHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHH
Q 003249 663 ESIQMKRSF--EA---------FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLA 731 (836)
Q Consensus 663 ~Ai~l~p~~--~a---------~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deA 731 (836)
+....+.+. .. +...+..+ ...+... +|+++....+..+.++.++|.+|.+.|++++|
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l----~~~G~~~-------eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A 622 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRL----RDSGKEA-------EAEALLRQQPPSTRIDLTLADWAQQRGDYAAA 622 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHH----HHCCCHH-------HHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence 433221110 00 01111111 1122222 33333333444567899999999999999999
Q ss_pred HHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCC
Q 003249 732 ADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDP 805 (836)
Q Consensus 732 i~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P 805 (836)
++.|+++++++|. .++.++|.++...|++++|++.++++++.+|+++.++..++ ..|++++|+..|++++.+.|
T Consensus 623 ~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 623 RAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 9999999998764 79999999999999999999999999999999999888774 46999999999999999988
Q ss_pred CCcc------cchhhHHHHHHHhh
Q 003249 806 LRVY------PYRYRAAGLIVFLN 823 (836)
Q Consensus 806 ~~~~------~y~~r~~~~~~~~~ 823 (836)
+.+. .++..|.+++..|+
T Consensus 703 ~~~~~~~~a~~~~~~a~~~~~~G~ 726 (1157)
T PRK11447 703 SQPPSMESALVLRDAARFEAQTGQ 726 (1157)
T ss_pred cCCcchhhHHHHHHHHHHHHHcCC
Confidence 7653 34444666655443
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=6.6e-28 Score=289.16 Aligned_cols=349 Identities=10% Similarity=-0.038 Sum_probs=287.4
Q ss_pred HHHHHHhhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----CCh
Q 003249 388 QLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEG 461 (836)
Q Consensus 388 ~lG~~~~~~g~y~eAi~~f~~Al~l--~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~~~ 461 (836)
.....+...|++++|+..++.++.. ++..++..+|.+....|++++|+..+++++..+|+.+.++...+.. ++.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 3455678899999999999998876 5667899999999999999999999999999999988888777642 566
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|+..|++|++++|+++.++..+|.++...|++++|++.+.+++..+|++ ..+.. +..+...|++++|+..++++++
T Consensus 127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999975 44434 3457889999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~ 620 (836)
.+|........ .........++++. ++..+.++++.+|+++.+++++|.++...|++
T Consensus 206 ~~~~~~~~~~~-----~l~~~l~~~g~~~e------------------A~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 206 FFALERQESAG-----LAVDTLCAVGKYQE------------------AIQTGESALARGLDGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred cCCCcchhHHH-----HHHHHHHHCCCHHH------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Confidence 88743221110 11112223333433 37788899999999999999999999999999
Q ss_pred HH----HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHH
Q 003249 621 EA----AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS 696 (836)
Q Consensus 621 ~e----Al~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~ 696 (836)
++ |+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++
T Consensus 263 ~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~------------------------- 317 (656)
T PRK15174 263 REAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL------------------------- 317 (656)
T ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------
Confidence 86 8999999999999999999999999999999999999999999887766
Q ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchh--HHhhHHHHHHhcCCHHHHHHHHHHHHHhc
Q 003249 697 LLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR--AHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (836)
Q Consensus 697 ~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~--A~~~la~~~~~~g~~~~A~~~~~kaie~~ 774 (836)
+.++.++|.+|.+.|++++|++.|+++++.+|.. ++..+|.++...|++++|++.|.++++++
T Consensus 318 ---------------~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 318 ---------------PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4578889999999999999999999999987764 45567889999999999999999999999
Q ss_pred CCCHHHHHHHHHccCHHHHHHHHHHhHhcCCCCc
Q 003249 775 RNNASAYEKRSEYCDRELTRADLEMVTQLDPLRV 808 (836)
Q Consensus 775 p~~a~Ay~~r~~~~~~~~A~~D~~~Ai~l~P~~~ 808 (836)
|++.. -++++|+..|+++++.-|...
T Consensus 383 P~~~~--------~~~~ea~~~~~~~~~~~~~~~ 408 (656)
T PRK15174 383 ASHLP--------QSFEEGLLALDGQISAVNLPP 408 (656)
T ss_pred hhhch--------hhHHHHHHHHHHHHHhcCCcc
Confidence 99852 234678888888777665544
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.97 E-value=8.7e-28 Score=288.13 Aligned_cols=326 Identities=10% Similarity=-0.016 Sum_probs=284.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh----cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 003249 420 GLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (836)
Q Consensus 420 ~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~----~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~ 495 (836)
..+....+.|+..+|...+..++..+|+...++...+. .++.++|+..|+++++++|+++.+|..+|.++...|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 44556788999999999999999999998888877763 36669999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHH
Q 003249 496 EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (836)
Q Consensus 496 ~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~ 574 (836)
++|+..|+++++++|+ ..++..+|.++..+|++++|+..|++++.++|+...++.... .....++++.|
T Consensus 127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-------~l~~~g~~~eA--- 196 (656)
T PRK15174 127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-------SFLNKSRLPED--- 196 (656)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHHcCCHHHH---
Confidence 9999999999999997 577888999999999999999999999999999876543221 12223444444
Q ss_pred HhhhhccCcccccchHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 003249 575 LQLYDRWSSVDDIGSLSVIYQMLESDA-PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH 653 (836)
Q Consensus 575 ~~~~~~~~~~~~~~aL~~~~~al~~~P-~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~ 653 (836)
+..+.+++..+| .....+...+.++.++|++++|++.|+++++++|+++.+++++|.++..+|+
T Consensus 197 ---------------~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 197 ---------------HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred ---------------HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 667788888876 4444556678899999999999999999999999999999999999999999
Q ss_pred HHH----HHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHH
Q 003249 654 CEE----GLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD 729 (836)
Q Consensus 654 ~ee----Al~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~d 729 (836)
+++ |+..|+++++++|++ +.++.++|.++..+|+++
T Consensus 262 ~~eA~~~A~~~~~~Al~l~P~~----------------------------------------~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 262 SREAKLQAAEHWRHALQFNSDN----------------------------------------VRIVTLYADALIRTGQNE 301 (656)
T ss_pred chhhHHHHHHHHHHHHhhCCCC----------------------------------------HHHHHHHHHHHHHCCCHH
Confidence 996 899999999988766 468999999999999999
Q ss_pred HHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH----HHccCHHHHHHHHHHhHhc
Q 003249 730 LAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----SEYCDRELTRADLEMVTQL 803 (836)
Q Consensus 730 eAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r----~~~~~~~~A~~D~~~Ai~l 803 (836)
+|+..|++|++++|. .++.++|.++...|++++|++.|.++++.+|+++.++..+ ...|+.++|++.|.+++++
T Consensus 302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999998765 6789999999999999999999999999999998777654 3569999999999999999
Q ss_pred CCCCccc
Q 003249 804 DPLRVYP 810 (836)
Q Consensus 804 ~P~~~~~ 810 (836)
+|++...
T Consensus 382 ~P~~~~~ 388 (656)
T PRK15174 382 RASHLPQ 388 (656)
T ss_pred Chhhchh
Confidence 9997643
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.2e-25 Score=276.30 Aligned_cols=225 Identities=12% Similarity=0.073 Sum_probs=153.6
Q ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 003249 592 VIYQMLESDAP--KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (836)
Q Consensus 592 ~~~~al~~~P~--~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p 669 (836)
.+.+++..+|+ ++.+|+++|.++.. +++++|+..+.+++...|++. ....+|.++...|++++|+..|++++...|
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p 540 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDM 540 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 45566777788 99999999999987 889999999999999999765 366677777899999999999999888777
Q ss_pred chHHHHHHHHHhhccc--------------cC----------------CCChhHHHHHHHHHhcCCccccchHHHHHHHH
Q 003249 670 SFEAFFLKAYALADSS--------------QD----------------SSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 719 (836)
Q Consensus 670 ~~~a~~~~a~aL~~~~--------------l~----------------~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG 719 (836)
...+++..+.++...| ++ .+....++..+++|++..|+ +.++.++|
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~----~~a~~~LA 616 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS----ANAYVARA 616 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----HHHHHHHH
Confidence 6665555554443322 01 12333444445555554442 45666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHH
Q 003249 720 SVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELT 793 (836)
Q Consensus 720 ~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A 793 (836)
.++.++|++++|+..|++|++++|. .++.++|.++...|++++|++.|.++++++|+++.++++++ ..|++++|
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 7777777777777777777666553 46666666666667777777777777777777776666663 34666677
Q ss_pred HHHHHHhHhcCCCCcccchhhHHHHHHHh
Q 003249 794 RADLEMVTQLDPLRVYPYRYRAAGLIVFL 822 (836)
Q Consensus 794 ~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~ 822 (836)
+..|++|++++|+.+...-.-|.++....
T Consensus 697 ~~~l~~Al~l~P~~a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 697 QHYARLVIDDIDNQALITPLTPEQNQQRF 725 (987)
T ss_pred HHHHHHHHhcCCCCchhhhhhhHHHHHHH
Confidence 77777777777766666666665555443
No 12
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.2e-27 Score=253.44 Aligned_cols=360 Identities=18% Similarity=0.117 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh
Q 003249 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (836)
Q Consensus 380 ~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~ 457 (836)
...|.++-+.|+-++..|+|++||++|++||++.|. --+.+++-+|...|++++-+++..++++++|....++..|+.
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 345778899999999999999999999999999776 356788888999998888888877777777777777777753
Q ss_pred ----cCChhhHHHHHHHHHhcC---------------------------------CCCh---------------------
Q 003249 458 ----YCEGDKRWEDLDKATALD---------------------------------PTLS--------------------- 479 (836)
Q Consensus 458 ----~~~~~eAi~d~~kAi~ld---------------------------------P~~~--------------------- 479 (836)
++...||+.|..- +.+. |..+
T Consensus 192 A~E~lg~~~eal~D~tv-~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~ 270 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTV-LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFD 270 (606)
T ss_pred HHHhhccHHHHHHhhhH-HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccccc
Confidence 3444666665322 1111 1111
Q ss_pred ------HHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-----CC---------hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 480 ------YPYMYRASSLMTKQ---NVEAALAEINRILGFK-----LA---------LECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 480 ------~ay~~rg~~l~~~g---~~~eAi~~~~kai~l~-----P~---------~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
++-..-+.-....+ .|.+|...+.+..... -+ ..++..||.+++-.|++-+|..||+
T Consensus 271 ~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~ 350 (606)
T KOG0547|consen 271 NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFD 350 (606)
T ss_pred CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHH
Confidence 00001111111122 3445554444444321 11 2334455666666666666666666
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003249 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (836)
Q Consensus 537 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~ 616 (836)
++|.++|.+...|.+++.... ..++-+ ....+++++..+||.++..|+.||.++.-
T Consensus 351 ~~I~l~~~~~~lyI~~a~~y~------d~~~~~------------------~~~~~F~~A~~ldp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 351 AAIKLDPAFNSLYIKRAAAYA------DENQSE------------------KMWKDFNKAEDLDPENPDVYYHRGQMRFL 406 (606)
T ss_pred HHHhcCcccchHHHHHHHHHh------hhhccH------------------HHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence 666666665443333222111 101000 12344555555666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHH
Q 003249 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS 696 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~ 696 (836)
++++++|+.+|+++++++|+++-++..++.++|++++++++..-|+.+++--|
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP--------------------------- 459 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP--------------------------- 459 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------------------
Confidence 66666666666666666666666666666666666666655555555554333
Q ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch----------hHHhhHHHHHHhcCCHHHHHHH
Q 003249 697 LLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----------RAHQGLARVHFLKNNKTTAYEE 766 (836)
Q Consensus 697 ~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~----------~A~~~la~~~~~~g~~~~A~~~ 766 (836)
.. ++.|+-.|.++.++++|+.|++.|.+|+++.|. ..|-.+..+. .++++..|+..
T Consensus 460 ----------~~---~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~L 525 (606)
T KOG0547|consen 460 ----------NC---PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENL 525 (606)
T ss_pred ----------CC---chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHH
Confidence 32 578888999999999999999999999998654 2333333344 45899999999
Q ss_pred HHHHHHhcCCCHHHHHHHHH----ccCHHHHHHHHHHhHhcCC
Q 003249 767 MTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDP 805 (836)
Q Consensus 767 ~~kaie~~p~~a~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P 805 (836)
.+||||++|..-.||...++ -|+.++||.-|++++.|--
T Consensus 526 l~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 526 LRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 3888999999999987644
No 13
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=1.3e-25 Score=274.28 Aligned_cols=407 Identities=11% Similarity=-0.065 Sum_probs=315.8
Q ss_pred HHHhhccchHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh----cCChhhH
Q 003249 391 CVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKR 464 (836)
Q Consensus 391 ~~~~~~g~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~----~~~~~eA 464 (836)
.+..-.|++++|+..|.+++.+++.. ++..+|.++...|++.+|+..+.+++...|+.+.++...+. .++.++|
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45677899999999999998765544 58999999999999999999999999999998888776654 3566999
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003249 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (836)
Q Consensus 465 i~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P 543 (836)
+..++++++.+|+++. +..+|.++...|++++|+..|+++++++|+ .+++..+|.++...|+.++|+..++++++ +|
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 9999999999999999 999999999999999999999999999997 56777889999999999999999998887 88
Q ss_pred CchhhhhhHHHHHHHHHHH----HHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHH-------HHHHHHH
Q 003249 544 DYRMFEGRVAASQLHMLVR----EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV-------LYFRQSL 612 (836)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~----~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~-------~~~~~gl 612 (836)
++................. ...+.+..+ ..++..+.++++..|.++. ++..+..
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a---------------d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIA---------------DRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHH---------------HHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 7421110000000000000 000001000 1246677777765433332 2222233
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-----HHHHHHHHHhhcccc
Q 003249 613 LLLRLNCPEAAMRSLQLARQHAASDH-ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-----EAFFLKAYALADSSQ 686 (836)
Q Consensus 613 ~l~~l~~~~eAl~~~~~Al~l~P~~~-eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-----~a~~~~a~aL~~~~l 686 (836)
++...|++++|++.|+++++..|.+| .+....|.++..+|++++|+..|+++++.+|.. ......++++ +
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~----~ 321 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL----L 321 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH----H
Confidence 45678999999999999999874432 234446999999999999999999999988765 1222233333 4
Q ss_pred CCCChhHHHHHHHHHhcCCcccc----------c--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHH
Q 003249 687 DSSCSSTVVSLLEDALKCPSDRL----------R--KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLAR 752 (836)
Q Consensus 687 ~~~~~~~~i~~l~~Al~~~~~~~----------~--~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~ 752 (836)
+.+....++..++++.+..|... + ...++..+|.++...|++++|++.++++++..|. .++..+|.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45667778888888877654221 1 2467889999999999999999999999998664 78999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcccchhhHHHH
Q 003249 753 VHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGL 818 (836)
Q Consensus 753 ~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~ 818 (836)
++...|++++|++.++++++++|++..++..++ ..|++++|...++++++.+|+++.+.+...+-.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~ 471 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARD 471 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999888874 458999999999999999999998888776653
No 14
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.95 E-value=3.2e-26 Score=238.32 Aligned_cols=318 Identities=17% Similarity=0.182 Sum_probs=256.1
Q ss_pred chHHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcC
Q 003249 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALE 526 (836)
Q Consensus 448 ~~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg 526 (836)
+|..+..+|.+ .+|+..|..|+++||++..+++.||.+|..+|+-..|+.+++++|+++|+. .+-..||.++.++|
T Consensus 44 lGk~lla~~Q~---sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQL---SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhH---HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 34445555555 788888999999999999999999999999999999999999999999996 55667999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchh---hhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCC
Q 003249 527 DYQAALCDVQAILTLSPDYRM---FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (836)
Q Consensus 527 ~~~~Ai~d~~~al~l~P~~~~---~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~ 603 (836)
++++|+.||+++|.-+|++-. ++.+++ .+.++...-+++ ....++.|...++..+++.|++.|++
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~------~~~e~~~l~~ql------~s~~~~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLA------LIQEHWVLVQQL------KSASGSGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHH------hHHHHHHHHHHH------HHHhcCCchhhHHHHHHHHHhcCcch
Confidence 999999999999999997632 222222 222222222222 22234455666899999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHH---HHHHHHH
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA---FFLKAYA 680 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a---~~~~a~a 680 (836)
+.+|..|+.+|...|.+..|+.+++.+-++..++.+.++....++|..|+.+.++...++.++++|+..- +|-+..
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklk- 267 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLK- 267 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999998743 333211
Q ss_pred hhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch------hHHhhHHHHH
Q 003249 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVH 754 (836)
Q Consensus 681 L~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~------~A~~~la~~~ 754 (836)
.+.+.++. .......++|-++++.+++.++-+|. +.+.-+-.++
T Consensus 268 ------------Kv~K~les------------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 268 ------------KVVKSLES------------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred ------------HHHHHHHH------------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 11111111 11234567899999999999998776 2334455678
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH--cc--CHHHHHHHHHHhHhcCCCCcccc
Q 003249 755 FLKNNKTTAYEEMTKLIKKARNNASAYEKRSE--YC--DRELTRADLEMVTQLDPLRVYPY 811 (836)
Q Consensus 755 ~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~--~~--~~~~A~~D~~~Ai~l~P~~~~~y 811 (836)
...|++-+||...+.+++++|++++++--|.+ ++ +|++||.||++|+++||+...+.
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 88899999999999999999999999999964 23 58999999999999999887553
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=4.2e-25 Score=271.39 Aligned_cols=370 Identities=14% Similarity=-0.024 Sum_probs=297.3
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccc-h---hhH-hhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHH--HH
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-I---YSI-AGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMY--QE 454 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~-~---~a~-~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay--~~ 454 (836)
.+.++.+.+....+.|++++|..+|+++....+ . .+. .+++.+|...+.....- +++...+..+..- .-
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~ 450 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA----KVAILSKPLPLAEQRQW 450 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH----HHHHhccccccchhHHH
Confidence 456788899999999999999999999988422 1 223 48888888877632211 1111211111100 01
Q ss_pred hhhcCChhhHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHH
Q 003249 455 RSLYCEGDKRWEDLDKATALDPT--LSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAAL 532 (836)
Q Consensus 455 r~~~~~~~eAi~d~~kAi~ldP~--~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai 532 (836)
.|..-....+...+.+++..+|. ++.+|+++|.++.. ++.++|+..|.+++...|+.......|.++...|++++|+
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi 529 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATAL 529 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHH
Confidence 12222224567778889999999 99999999999998 8999999999999999998544444677778999999999
Q ss_pred HHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHH
Q 003249 533 CDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 612 (836)
Q Consensus 533 ~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl 612 (836)
..|++++...|+.... ... +.+....++.+. ++..+.+++..+|.....+...+.
T Consensus 530 ~~~rka~~~~p~~~a~-~~l------a~all~~Gd~~e------------------A~~~l~qAL~l~P~~~~l~~~La~ 584 (987)
T PRK09782 530 AAWQKISLHDMSNEDL-LAA------ANTAQAAGNGAA------------------RDRWLQQAEQRGLGDNALYWWLHA 584 (987)
T ss_pred HHHHHHhccCCCcHHH-HHH------HHHHHHCCCHHH------------------HHHHHHHHHhcCCccHHHHHHHHH
Confidence 9999998887765332 111 112222333333 477888999999999988888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChh
Q 003249 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (836)
Q Consensus 613 ~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~ 692 (836)
.+.+.|++++|++.|+++++++|+ +++++++|.++.++|++++|+..|+++++++|++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~--------------------- 642 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN--------------------- 642 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------------
Confidence 888889999999999999999997 9999999999999999999999999999998877
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHH
Q 003249 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 770 (836)
Q Consensus 693 ~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~ka 770 (836)
+.+++++|.++.+.|++++|++.|++|+++.|. .++.++|.++...|++++|++.|.++
T Consensus 643 -------------------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 643 -------------------SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999765 68999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHc----cCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhh
Q 003249 771 IKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLN 823 (836)
Q Consensus 771 ie~~p~~a~Ay~~r~~~----~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~ 823 (836)
|+++|+++......+++ .+++.|.++|+++..++|..+ +..-.|.+++..+|
T Consensus 704 l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~ 759 (987)
T PRK09782 704 IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNN 759 (987)
T ss_pred HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhccc
Confidence 99999999998887654 568899999999999999999 88888888887665
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.7e-25 Score=237.74 Aligned_cols=334 Identities=16% Similarity=0.127 Sum_probs=256.0
Q ss_pred chHHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcC
Q 003249 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALE 526 (836)
Q Consensus 448 ~~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg 526 (836)
.|+-+...+.| ++||..|++||++.|+-+-.|.||+.+|...|++++-+++.++|++++|++ .+++.|+.++..+|
T Consensus 121 ~GN~~f~~kkY---~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 121 KGNKFFRNKKY---DEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhcccH---HHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 34444444444 999999999999999999999999999999999999999999999999996 78888999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchhhh-----hhH----H--------------------------------------------
Q 003249 527 DYQAALCDVQAILTLSPDYRMFE-----GRV----A-------------------------------------------- 553 (836)
Q Consensus 527 ~~~~Ai~d~~~al~l~P~~~~~~-----~~~----~-------------------------------------------- 553 (836)
++++|+.|... +-|+-++.... -|. +
T Consensus 198 ~~~eal~D~tv-~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 198 KFDEALFDVTV-LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred cHHHHHHhhhH-HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 99999999752 23332221100 000 0
Q ss_pred ---HHHHHHHHHH-HhhhHhHHHHHHh--hhh--ccC-------------------------cccccchHHHHHHHHhcC
Q 003249 554 ---ASQLHMLVRE-HIDNWTIADCWLQ--LYD--RWS-------------------------SVDDIGSLSVIYQMLESD 600 (836)
Q Consensus 554 ---~~~~~~~l~~-~~~~~~~a~~~~~--~~~--~~~-------------------------~~~~~~aL~~~~~al~~~ 600 (836)
....++.++. ..+.|..+...+. .+. ... ..+..++-..++.+|.++
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 0000111111 1112222211110 000 000 011123455778888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHH
Q 003249 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (836)
Q Consensus 601 P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~a 680 (836)
|.....|..+|.+|...++.++-..+|++|..++|.+++.|+.||.+++-+++|++|+++|++|++|+|++
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--------- 427 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--------- 427 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh---------
Confidence 88888888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred hhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC--CchhHHhhHHHHHHhcC
Q 003249 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKN 758 (836)
Q Consensus 681 L~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l--~~~~A~~~la~~~~~~g 758 (836)
.-+|..++.+.+++++++++...|+.+++- +....+.-.|.++.-++
T Consensus 428 -------------------------------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 428 -------------------------------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred -------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH
Confidence 357888999999999999999999999985 34577888899999999
Q ss_pred CHHHHHHHHHHHHHhcCC------CHHHHHHHHHc-----cCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhhhh
Q 003249 759 NKTTAYEEMTKLIKKARN------NASAYEKRSEY-----CDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNLH 825 (836)
Q Consensus 759 ~~~~A~~~~~kaie~~p~------~a~Ay~~r~~~-----~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~~~ 825 (836)
+++.|++.|.++|++.|. ++.-+...+-+ +|+..|++-+++||++||.--.||-.-|-+..|+|+..
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKID 554 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999 88888776432 78899999999999999999999999999999998754
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.7e-23 Score=255.74 Aligned_cols=372 Identities=13% Similarity=0.011 Sum_probs=297.7
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh--
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~-- 457 (836)
.+.++..+|.++...|++++|+..|++++++.|. .++.++|.++...|++.+|+..+.+++..+|+.+. +...+.
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l 126 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVY 126 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 3457889999999999999999999999998654 57889999999999999999999999999999988 777764
Q ss_pred --cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-H-----HHHHHHHHH-----Hh
Q 003249 458 --YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-E-----CLELRFCFF-----LA 524 (836)
Q Consensus 458 --~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~-----~~~~rg~~~-----~~ 524 (836)
.++.++|+..|+++++++|+++.++..+|.++...++.++|+..++++.+ +|+. . ....+..+. ..
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 36669999999999999999999999999999999999999999999887 7642 1 111122222 22
Q ss_pred cCCH---HHHHHHHHHHHhhCCCchhhhhhH--HHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhc
Q 003249 525 LEDY---QAALCDVQAILTLSPDYRMFEGRV--AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (836)
Q Consensus 525 lg~~---~~Ai~d~~~al~l~P~~~~~~~~~--~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~ 599 (836)
.+++ ++|++.|+++++..|.++...... +....++.+... ++++.| +..|.+++..
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~-g~~~eA------------------~~~~~~ll~~ 266 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR-DRYKDV------------------ISEYQRLKAE 266 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh-hhHHHH------------------HHHHHHhhcc
Confidence 3445 889999999998765554322111 111111222221 333333 6678888887
Q ss_pred C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-
Q 003249 600 D---APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF- 671 (836)
Q Consensus 600 ~---P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~----~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~- 671 (836)
. |.++..+ .|.++..+|++++|+..|+++++.+|.+ .+.+..++.++.++|++++|++.++++++.+|..
T Consensus 267 ~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~ 344 (765)
T PRK10049 267 GQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFL 344 (765)
T ss_pred CCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceE
Confidence 5 4554444 5889999999999999999999999877 4678888999999999999999999999987731
Q ss_pred ---------------HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 672 ---------------EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYS 736 (836)
Q Consensus 672 ---------------~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~ 736 (836)
.+++.++..+.. .+....+++.++++++..|+. ..++.++|.++...|++++|++.++
T Consensus 345 ~~~~~~~~~p~~~~~~a~~~~a~~l~~----~g~~~eA~~~l~~al~~~P~n---~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 345 RLYGSPTSIPNDDWLQGQSLLSQVAKY----SNDLPQAEMRARELAYNAPGN---QGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 244555555554 356777889999999876665 6899999999999999999999999
Q ss_pred HHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 003249 737 NALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEK 783 (836)
Q Consensus 737 kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~ 783 (836)
+|++++|. .++..+|.++...|++++|...+.++++..|+++.+..-
T Consensus 418 ~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~ 466 (765)
T PRK10049 418 KAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL 466 (765)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999875 588999999999999999999999999999999988643
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.8e-21 Score=224.10 Aligned_cols=434 Identities=16% Similarity=0.124 Sum_probs=338.1
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch---hhHhhHHHHHHhcCCHHHHHHHHHHhHh
Q 003249 367 CFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI---YSIAGLARLGYIKGHKLWAYEKLNSVIS 443 (836)
Q Consensus 367 ~LLe~a~~ca~~~~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~---~a~~~la~~~~~~G~~~~A~~~~~~ai~ 443 (836)
.+.+.+..........+..+|++|.++..+|+|++|-.+|.+|+..++. .++.|+|.++..+|++..|..++.+++.
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence 3777777766666678889999999999999999999999999998543 5789999999999999999999999999
Q ss_pred ccCCchHHHHHhhhc-CC-------hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-
Q 003249 444 SVTPLGWMYQERSLY-CE-------GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-----K- 509 (836)
Q Consensus 444 ~~~~~~~ay~~r~~~-~~-------~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l-----~- 509 (836)
.+|++.....-.|-+ .. .+.|.....++++..|.++.+|..+|.++-... .-.++..|++|+.+ .
T Consensus 371 ~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ 449 (1018)
T KOG2002|consen 371 QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQ 449 (1018)
T ss_pred hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCC
Confidence 999987766666532 11 278999999999999999999999999876554 44559999999943 2
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcc
Q 003249 510 LALECLELRFCFFLALEDYQAALCDVQAILTL-----SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (836)
Q Consensus 510 P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l-----~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~ 584 (836)
+.++.++|.|..++.+|++++|...|.+|+.. |++..... .+...+.+..+.+.....+.|
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~-~lt~~YNlarl~E~l~~~~~A------------- 515 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST-NLTLKYNLARLLEELHDTEVA------------- 515 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc-hhHHHHHHHHHHHhhhhhhHH-------------
Confidence 34678889999999999999999999999987 34432111 111222233333333333333
Q ss_pred cccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (836)
Q Consensus 585 ~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~A 664 (836)
-..|...+...|+...+|.++|......|...+|...++.+++++.++++++-.+|..+.....+--|-..|+..
T Consensus 516 -----~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 516 -----EEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred -----HHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 467888999999999999999966667788889999999999999999999999999999999999999988888
Q ss_pred Hhcccch-HHHHH--HHHH-hhccc---cCC----CChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHH
Q 003249 665 IQMKRSF-EAFFL--KAYA-LADSS---QDS----SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAAD 733 (836)
Q Consensus 665 i~l~p~~-~a~~~--~a~a-L~~~~---l~~----~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~ 733 (836)
++-.-.. .+|-. .|+. +.... -+| .+...+++.|.+++++.|.+ ..|-|.+|.|+...|++++|++
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN---~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKN---MYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcch---hhhccchhhhhhhccCchHHHH
Confidence 8654222 22222 1221 11111 122 23445566677777766665 4788999999999999999999
Q ss_pred HHHHHHcC--CchhHHhhHHHHHHhcCCHHHHHHHHHHHHHhc-C-CCHHH--HHHHH--HccCHHHHHHHHHHhHhcCC
Q 003249 734 CYSNALKI--RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKA-R-NNASA--YEKRS--EYCDRELTRADLEMVTQLDP 805 (836)
Q Consensus 734 ~y~kAL~l--~~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~-p-~~a~A--y~~r~--~~~~~~~A~~D~~~Ai~l~P 805 (836)
.|.+..+- +....+.|+|.+|...|+|-.|++-|+..++.- + |+... |..|. +-|++++|+..+.+|+.+.|
T Consensus 668 IFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 668 IFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 99999874 356789999999999999999999999999543 3 33332 34442 33567999999999999999
Q ss_pred CCcccchhhHHHHHHHhh
Q 003249 806 LRVYPYRYRAAGLIVFLN 823 (836)
Q Consensus 806 ~~~~~y~~r~~~~~~~~~ 823 (836)
.++.--.|+|.|+-+...
T Consensus 748 ~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 748 SNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred ccchHHhHHHHHHHHHHH
Confidence 999999999999877654
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.1e-22 Score=225.71 Aligned_cols=307 Identities=13% Similarity=0.013 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCC
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~ 460 (836)
+...+.+|..+...|++++|+..|+++++.+|. .++..+|.++...|++++|+..+++++...+ ...
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~---------- 103 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD-LTR---------- 103 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC-CCH----------
Confidence 346677899999999999999999999998765 3677888888899988888777655543211 000
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 461 ~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
+....++..+|.++...|++++|+..|+++++.+|. ..++..++.++...|++++|++.|++++
T Consensus 104 ---------------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 104 ---------------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred ---------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 001256888999999999999999999999999886 4677788999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003249 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (836)
Q Consensus 540 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~ 619 (836)
+.+|+.... ..+..+..+|.++.+.|+
T Consensus 169 ~~~~~~~~~-----------------------------------------------------~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 169 KLGGDSLRV-----------------------------------------------------EIAHFYCELAQQALARGD 195 (389)
T ss_pred HhcCCcchH-----------------------------------------------------HHHHHHHHHHHHHHhCCC
Confidence 988865210 012345678888999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHH
Q 003249 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 699 (836)
Q Consensus 620 ~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~ 699 (836)
+++|+..|+++++.+|++.++++.+|.++..+|++++|++.|+++++++|.+.
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--------------------------- 248 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL--------------------------- 248 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH---------------------------
Confidence 99999999999999999999999999999999999999999999998766541
Q ss_pred HHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCH
Q 003249 700 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 778 (836)
Q Consensus 700 ~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a 778 (836)
..++..++.+|...|++++|+..+++++++.|. .....+|.++...|++++|+..+.++++.+|++.
T Consensus 249 ------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 249 ------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR 316 (389)
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence 246788999999999999999999999998664 3458899999999999999999999999999998
Q ss_pred HHH--HHHHH----ccCHHHHHHHHHHh----HhcCCCC
Q 003249 779 SAY--EKRSE----YCDRELTRADLEMV----TQLDPLR 807 (836)
Q Consensus 779 ~Ay--~~r~~----~~~~~~A~~D~~~A----i~l~P~~ 807 (836)
... ..+.. .|+.++|+..+++. ++.+|.+
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 654 22211 34777887777655 4666653
No 20
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-22 Score=222.35 Aligned_cols=350 Identities=15% Similarity=0.118 Sum_probs=222.5
Q ss_pred CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~ 537 (836)
++.+.|+..|..||.|+|.|.--|.||..++..+|+|++|+.+-.+.++++|+ +..|...|.++..+|+|++|+..|.+
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 34477888888888888888888888988898899999999998999999888 56677778888888999999999999
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhh---------------------hhccCc-cc-----c-cc-
Q 003249 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL---------------------YDRWSS-VD-----D-IG- 588 (836)
Q Consensus 538 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~---------------------~~~~~~-~~-----~-~~- 588 (836)
.|+.+|++...+..+.-.. ...+...+..+...-|+.+ +.+.+. +. + ..
T Consensus 96 GL~~d~~n~~L~~gl~~a~--~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 96 GLEKDPSNKQLKTGLAQAY--LEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred HhhcCCchHHHHHhHHHhh--hHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 9999888865433322211 1111111111111111111 000000 00 0 00
Q ss_pred hHHHH---------HHHH-----hcCC---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003249 589 SLSVI---------YQML-----ESDA---------------------PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (836)
Q Consensus 589 aL~~~---------~~al-----~~~P---------------------~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l 633 (836)
++.++ -..+ ..+| ..+....++|....+..+++.|+++|.+++++
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 00000 0000 0111 12345667888888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH-HHHHHHHHhhccc---cCCCChhHHHHHHHHHhcCCcc--
Q 003249 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSS---QDSSCSSTVVSLLEDALKCPSD-- 707 (836)
Q Consensus 634 ~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~-a~~~~a~aL~~~~---l~~~~~~~~i~~l~~Al~~~~~-- 707 (836)
+ .+...+.+++-+++..|++.+.+...+++++-.+... .+.+.+-+++..| ...+....++..|.+++.-...
T Consensus 254 ~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~ 332 (539)
T KOG0548|consen 254 A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD 332 (539)
T ss_pred h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH
Confidence 9 9999999999999999999999999999988766553 2333333333322 1223334444444444422111
Q ss_pred ---------------------ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHH
Q 003249 708 ---------------------RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY 764 (836)
Q Consensus 708 ---------------------~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~ 764 (836)
++..+..-.+.|+-++..|+|.+|+..|++||..+|. ..+.|+|.+|.++|.+..|+
T Consensus 333 ~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL 412 (539)
T KOG0548|consen 333 LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEAL 412 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHH
Confidence 0112233456677777777777777777777776654 45677777777777777777
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH----ccCHHHHHHHHHHhHhcCCCCcccc
Q 003249 765 EEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPY 811 (836)
Q Consensus 765 ~~~~kaie~~p~~a~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P~~~~~y 811 (836)
+|.+++|+++|++..+|...+. .-+++.|++-|++|+++||+...+-
T Consensus 413 ~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 413 KDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 7777777777777777766643 2356777777777777777665543
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.4e-20 Score=216.51 Aligned_cols=380 Identities=14% Similarity=0.024 Sum_probs=309.5
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~---~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~ 457 (836)
....++...+++.+.+|+|-.|+.+|++|+.++| ++...|+|.+..+.|+.+.|+..+.++++++|..+.++...|.
T Consensus 162 ~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~ 241 (1018)
T KOG2002|consen 162 DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGE 241 (1018)
T ss_pred cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence 3456777888889999999999999999999865 4567888989999999999999999999999999999988875
Q ss_pred cC-------ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhcC
Q 003249 458 YC-------EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALE 526 (836)
Q Consensus 458 ~~-------~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~----~~~~~~rg~~~~~lg 526 (836)
+. ....++..+.+|...+|.|+.+.+.+++-++..|+|+.+......||...-+ .+.+|..|..|..+|
T Consensus 242 ~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 242 VDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 41 2267899999999999999999999999999999999999999999987643 356889999999999
Q ss_pred CHHHHHHHHHHHHhhCCCc-hhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHH
Q 003249 527 DYQAALCDVQAILTLSPDY-RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (836)
Q Consensus 527 ~~~~Ai~d~~~al~l~P~~-~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~ 605 (836)
+|++|...|.++++.+|++ ...+..++ ..+-..+.+ -++..++.+.+...|++.+
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~Glg------Qm~i~~~dl------------------e~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLG------QMYIKRGDL------------------EESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchh------HHHHHhchH------------------HHHHHHHHHHHHhCcchHH
Confidence 9999999999999999998 33333222 111111111 1346778888888888888
Q ss_pred HHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 003249 606 LYFRQSLLLLRLN----CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (836)
Q Consensus 606 ~~~~~gl~l~~l~----~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL 681 (836)
...-+|.+|...+ .-+.|...+.++++..|.|.++|..++.++-.. +.-.++..|.+|+.+
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~-------------- 442 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDI-------------- 442 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHH--------------
Confidence 8888888887764 567788888888888888888888888887654 444448888888743
Q ss_pred hccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-----Cchh-------HHhh
Q 003249 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-----RHTR-------AHQG 749 (836)
Q Consensus 682 ~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l-----~~~~-------A~~~ 749 (836)
+...-..+ .++.+||+|..++..|++.+|...|.+|+.. ++.. ..+|
T Consensus 443 ----------------L~~~~~~i-----p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 443 ----------------LESKGKQI-----PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred ----------------HHHcCCCC-----CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 11111111 1578999999999999999999999999986 2222 4799
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHH
Q 003249 750 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIV 820 (836)
Q Consensus 750 la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~ 820 (836)
+|+++...++++.|-+.|..+++..|++-.+|...+ .-+...+|+..++.++.+|...+.+...=|..++.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 999999999999999999999999999999999985 23678999999999999999999887776655544
No 22
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=9.7e-22 Score=221.43 Aligned_cols=284 Identities=14% Similarity=0.084 Sum_probs=209.9
Q ss_pred ccchHHHHHHHHHHHhc---cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCc---hHHHHHhhhcCCh-hhHHHHH
Q 003249 396 RKEYDEAEHLFEAAVNA---GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL---GWMYQERSLYCEG-DKRWEDL 468 (836)
Q Consensus 396 ~g~y~eAi~~f~~Al~l---~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~---~~ay~~r~~~~~~-~eAi~d~ 468 (836)
.=+..+|+..|++ +.. +-......+|++|+.+++|++|.+.|+.+=.+.|-. -+.|.. .++-.. +-++..+
T Consensus 332 ~y~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST-~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 332 QYNCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYST-TLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHH-HHHHHHhhHHHHHH
Confidence 3345788888888 443 223455678888888888888888888776655521 111111 011000 1233333
Q ss_pred -HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 003249 469 -DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (836)
Q Consensus 469 -~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~ 546 (836)
...|.-||+.++.|...|+++.-+++.+.||..|.|||++||+. .+|...|--+....++|.|..+|++||..+|.+
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh- 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH- 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh-
Confidence 35678888888888888888888888888888888888888874 566777888888888888888888888888765
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003249 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (836)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~ 626 (836)
-.+||.+|++|+++++++.|.-.
T Consensus 489 ---------------------------------------------------------YnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 489 ---------------------------------------------------------YNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred ---------------------------------------------------------hHHHHhhhhheeccchhhHHHHH
Confidence 24678888888888888888888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCc
Q 003249 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (836)
Q Consensus 627 ~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~ 706 (836)
|++|+++||.+.-.+...|.++.++|+.|+|+..|++|+.++|.+
T Consensus 512 fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn----------------------------------- 556 (638)
T KOG1126|consen 512 FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN----------------------------------- 556 (638)
T ss_pred HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC-----------------------------------
Confidence 888888888888888888888888888888888888888877665
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHH
Q 003249 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS 779 (836)
Q Consensus 707 ~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~ 779 (836)
+..-+++|.++..++++++|+..+++--++-|. .+|+-+|++|...|+.+.|+..|+=|.+++|.-++
T Consensus 557 -----~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 557 -----PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred -----chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 234567788888888888888888777666443 56788888888888888888888777777777655
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=7.5e-22 Score=222.32 Aligned_cols=282 Identities=14% Similarity=0.089 Sum_probs=237.2
Q ss_pred CHHHHHHHHHHhHhccCCchHHHHHhhh----cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 430 HKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRI 505 (836)
Q Consensus 430 ~~~~A~~~~~~ai~~~~~~~~ay~~r~~----~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~ka 505 (836)
+..+|+..|.+.-...++.+|.....|+ +.++++|.+.|+.+-.++|-....--....+++.+++.-+==..-+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4568888888844445676776655553 234489999999999999987776666667777776654433444566
Q ss_pred HhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcc
Q 003249 506 LGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSV 584 (836)
Q Consensus 506 i~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~ 584 (836)
|.-+|+ |+.|-..|.+|.-++|++.||.+|++||++||+++.+|-
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayT---------------------------------- 459 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYT---------------------------------- 459 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhh----------------------------------
Confidence 788896 889999999999999999999999999999999865442
Q ss_pred cccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 585 DDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (836)
Q Consensus 585 ~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~A 664 (836)
.+|.-+..+..+|.|+.+|++|+..+|.+-.|||.+|.||.+++++|.|.-.|++|
T Consensus 460 ------------------------LlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA 515 (638)
T KOG1126|consen 460 ------------------------LLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA 515 (638)
T ss_pred ------------------------hcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhh
Confidence 22333345677899999999999999999999999999999999999999999999
Q ss_pred HhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 665 IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 665 i~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
++|+|.+ ......+|.++..+|+.|+|+..|++|+-++|.
T Consensus 516 ~~INP~n----------------------------------------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k 555 (638)
T KOG1126|consen 516 VEINPSN----------------------------------------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK 555 (638)
T ss_pred hcCCccc----------------------------------------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC
Confidence 9999987 246788999999999999999999999999876
Q ss_pred h--HHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcc
Q 003249 745 R--AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVY 809 (836)
Q Consensus 745 ~--A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~ 809 (836)
. ..+..|.++...|++++|+.++++.=++.|+.+.+|.-.+ ++|..+.|+.-|.-|.+|||+-+.
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 4 5689999999999999999999999999999999998885 568999999999999999998765
No 24
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9e-21 Score=209.19 Aligned_cols=361 Identities=13% Similarity=0.056 Sum_probs=240.4
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHhccchhh--HhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhH
Q 003249 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYS--IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR 464 (836)
Q Consensus 387 ~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a--~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eA 464 (836)
-..|++.+..|+|+.|+.+|..||.++|... +.+..-.|..+|++ ++|
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~------------------------------~~a 55 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSY------------------------------EKA 55 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhH------------------------------HHH
Confidence 3568888999999999999999999876632 23334444555544 555
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHhc------------------
Q 003249 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE-CLELRFCFFLAL------------------ 525 (836)
Q Consensus 465 i~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~-~~~~rg~~~~~l------------------ 525 (836)
+.|-.+.++++|+-+..|...|.++.-+|+|++|+..|.+.|+.+|++. .+..+..++...
T Consensus 56 l~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~ 135 (539)
T KOG0548|consen 56 LKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLAN 135 (539)
T ss_pred HHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhc
Confidence 5556666677777777777777777777777777777777777777643 333455444111
Q ss_pred ------CCHHHHHHHHHHHHhhCCCchhhhhhHHHHH-------------------------------------HHHHHH
Q 003249 526 ------EDYQAALCDVQAILTLSPDYRMFEGRVAASQ-------------------------------------LHMLVR 562 (836)
Q Consensus 526 ------g~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~-------------------------------------~~~~l~ 562 (836)
--++.+..-..+.++.+|.....+++.-..- ..+...
T Consensus 136 ~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ 215 (539)
T KOG0548|consen 136 LPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNT 215 (539)
T ss_pred ChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhH
Confidence 0122333333444444554433322211000 000001
Q ss_pred HHhhhHhHHHHHHhhhhcc-CcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 003249 563 EHIDNWTIADCWLQLYDRW-SSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---- 637 (836)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~-~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~---- 637 (836)
+..+....|.....+.... ...+...++..|.++++++ .+...+.+++.++...+++.+.+.....+++..-..
T Consensus 216 ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 216 EERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence 1111111222222222221 1122233688999999999 999999999999999999999998888888654433
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH------------------HHHH--HHHHhhccc---cCCCCh
Q 003249 638 ---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE------------------AFFL--KAYALADSS---QDSSCS 691 (836)
Q Consensus 638 ---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~------------------a~~~--~a~aL~~~~---l~~~~~ 691 (836)
+.++..+|..+.++|+++.|+..|++++.-.+... ++.. ++-..-..| ...++.
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 23444578889999999999999999997765421 0110 000000011 345667
Q ss_pred hHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHH
Q 003249 692 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTK 769 (836)
Q Consensus 692 ~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~k 769 (836)
..++..|.+||+-.|++ +.+|.|++.+|.++|.+.+|+.+.+++++++|. .++...|.++....+|+.|++.|.+
T Consensus 375 ~~Av~~YteAIkr~P~D---a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPED---ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhcCCch---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999876554 789999999999999999999999999999886 6899999999999999999999999
Q ss_pred HHHhcCCCHHHH
Q 003249 770 LIKKARNNASAY 781 (836)
Q Consensus 770 aie~~p~~a~Ay 781 (836)
+++.+|+++.+-
T Consensus 452 ale~dp~~~e~~ 463 (539)
T KOG0548|consen 452 ALELDPSNAEAI 463 (539)
T ss_pred HHhcCchhHHHH
Confidence 999999997774
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.2e-20 Score=212.83 Aligned_cols=249 Identities=9% Similarity=-0.058 Sum_probs=211.0
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-----ECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-----~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
++|+..|.++++++|+++.+|..+|.++...|++++|+..++++++..+.. ..+..+|.+|...|++++|+..|+
T Consensus 52 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 131 (389)
T PRK11788 52 DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFL 131 (389)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 667777888899999999999999999999999999999999988854321 345667888999999999999888
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003249 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (836)
Q Consensus 537 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~ 616 (836)
++++.+|.. ..++..++.++..
T Consensus 132 ~~l~~~~~~----------------------------------------------------------~~~~~~la~~~~~ 153 (389)
T PRK11788 132 QLVDEGDFA----------------------------------------------------------EGALQQLLEIYQQ 153 (389)
T ss_pred HHHcCCcch----------------------------------------------------------HHHHHHHHHHHHH
Confidence 888876654 3445667778888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCCh
Q 003249 617 LNCPEAAMRSLQLARQHAASDHE-----RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 691 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~~~e-----al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~ 691 (836)
.|++++|++.++++++.+|.+.. .+..+|.++.++|++++|+..|+++++++|+.
T Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------------------- 213 (389)
T PRK11788 154 EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-------------------- 213 (389)
T ss_pred hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC--------------------
Confidence 99999999999999999887643 56789999999999999999999999876654
Q ss_pred hHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch---hHHhhHHHHHHhcCCHHHHHHHHH
Q 003249 692 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMT 768 (836)
Q Consensus 692 ~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~---~A~~~la~~~~~~g~~~~A~~~~~ 768 (836)
..++..+|.+|...|++++|++.|+++++++|. .++..++.++...|++++|+..++
T Consensus 214 --------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 214 --------------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred --------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 357889999999999999999999999998764 457889999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcc
Q 003249 769 KLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVY 809 (836)
Q Consensus 769 kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~ 809 (836)
++++..|+...+ ...+ ..|++++|+..|+++++++|+.+.
T Consensus 274 ~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 274 RALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 999999988554 5554 348999999999999999999863
No 26
>PHA02713 hypothetical protein; Provisional
Probab=99.88 E-value=3.8e-22 Score=234.74 Aligned_cols=151 Identities=14% Similarity=0.242 Sum_probs=134.8
Q ss_pred CCCCccccEEEEeC-CeEEehhHHHHhhcCHHHHHhhcCCCCcCC-cceeEecCCCCCHHHHHHHHHhhccCcCCCCCHH
Q 003249 176 SGDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN 253 (836)
Q Consensus 176 ~~~~~~~DV~~~v~-~~~~~aHr~vLaa~S~yF~amf~~~~~Es~-~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~ 253 (836)
..++.+|||+|+|+ |++|+|||.|||++|+||++||+++|+|+. +.+|+|+ ++++++|+.+|+|+|||+ ++.+
T Consensus 20 r~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~---i~~~ 94 (557)
T PHA02713 20 LDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH---ISSM 94 (557)
T ss_pred HhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEec--cCCHHHHHHHHHHhcCCC---CCHH
Confidence 56789999999997 899999999999999999999999999875 7999999 699999999999999996 4689
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhccc--------CCChHHHH
Q 003249 254 LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVV 325 (836)
Q Consensus 254 ~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~--------~l~~~~~~ 325 (836)
||++||.+|+++.++.|+..|...|...+ +.++|+.++..+.......|...|.+++.+|++. .|+.+++.
T Consensus 95 nv~~ll~aA~~lqi~~l~~~C~~~l~~~l-~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~ 173 (557)
T PHA02713 95 NVIDVLKCADYLLIDDLVTDCESYIKDYT-NHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEILF 173 (557)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHhhC-CccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHHHHH
Confidence 99999999999999999999999998877 6789999988777777777888888888877654 46778888
Q ss_pred HHHhccc
Q 003249 326 EIFSHAN 332 (836)
Q Consensus 326 ~ll~~~~ 332 (836)
++|++|+
T Consensus 174 ~lL~~d~ 180 (557)
T PHA02713 174 DIISTND 180 (557)
T ss_pred HHhcccc
Confidence 8999875
No 27
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.88 E-value=7.5e-22 Score=231.58 Aligned_cols=155 Identities=21% Similarity=0.301 Sum_probs=134.8
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
...+.+|||++.+++++|+|||+||||+||||++||+++|+|+.+.+|+|. +|++.+|..+++|+|||++. ++.+||
T Consensus 31 r~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~-i~~~nV 107 (571)
T KOG4441|consen 31 REEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLE--GVDPETLELLLDYAYTGKLE-ISEDNV 107 (571)
T ss_pred HHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEe--cCCHHHHHHHHHHhhcceEE-echHhH
Confidence 678999999999999999999999999999999999999999999999999 69999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhh--------cccCCChHHHHHH
Q 003249 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRE--------LPDCLNDERVVEI 327 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~--------~~~~l~~~~~~~l 327 (836)
++||.+|+++.+..+.+.|...|...+ +.+|++.+..+|..++...|....-.++.+| .+..|+.+++.++
T Consensus 108 q~ll~aA~~lQi~~v~~~C~~fL~~~l-~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~l 186 (571)
T KOG4441|consen 108 QELLEAASLLQIPEVVDACCEFLESQL-DPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGL 186 (571)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhh
Confidence 999999999888888888887777766 5778888888888888887765555444444 3445777888888
Q ss_pred Hhccccc
Q 003249 328 FSHANRQ 334 (836)
Q Consensus 328 l~~~~~~ 334 (836)
|++++..
T Consensus 187 l~~d~l~ 193 (571)
T KOG4441|consen 187 LSSDDLN 193 (571)
T ss_pred ccccCCC
Confidence 8888643
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=4.9e-20 Score=217.70 Aligned_cols=246 Identities=13% Similarity=0.059 Sum_probs=197.8
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTK---------QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAA 531 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~---------g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~A 531 (836)
++|+..|++|++++|+++.+|..+|.++... +++++|+..+++|++++|+ +.++..+|.++..+|++++|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 6889999999999999999999999877643 3489999999999999997 57788899999999999999
Q ss_pred HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHH
Q 003249 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (836)
Q Consensus 532 i~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~g 611 (836)
+..|++|++++|+++ .+|+.+|
T Consensus 358 ~~~~~~Al~l~P~~~----------------------------------------------------------~a~~~lg 379 (553)
T PRK12370 358 SLLFKQANLLSPISA----------------------------------------------------------DIKYYYG 379 (553)
T ss_pred HHHHHHHHHhCCCCH----------------------------------------------------------HHHHHHH
Confidence 999999999988773 4566778
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchHHHHHHHHHhhccccCCCC
Q 003249 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSC 690 (836)
Q Consensus 612 l~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~-p~~~a~~~~a~aL~~~~l~~~~ 690 (836)
.++...|++++|++.++++++++|.++.+++.++.+++.+|++++|++.++++++.. |++
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~------------------- 440 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN------------------- 440 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC-------------------
Confidence 888899999999999999999999999888888888999999999999999988764 333
Q ss_pred hhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHH
Q 003249 691 SSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMT 768 (836)
Q Consensus 691 ~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~ 768 (836)
+.++.++|.+|..+|++++|++.+.+.+...|. .+...++.+|...|+ +|...+.
T Consensus 441 ---------------------~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~ 497 (553)
T PRK12370 441 ---------------------PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIR 497 (553)
T ss_pred ---------------------HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHH
Confidence 457888999999999999999999988776554 567778888888884 5555555
Q ss_pred HHH---HhcCCCHHHHHHHH-HccCHHHHHHHHHHhHhcCCCCc
Q 003249 769 KLI---KKARNNASAYEKRS-EYCDRELTRADLEMVTQLDPLRV 808 (836)
Q Consensus 769 kai---e~~p~~a~Ay~~r~-~~~~~~~A~~D~~~Ai~l~P~~~ 808 (836)
+.+ +..|.++.....-. -.||++.|+-+ .++.+.++.+.
T Consensus 498 ~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~ 540 (553)
T PRK12370 498 EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDNIWF 540 (553)
T ss_pred HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccchHhh
Confidence 544 45566655543332 34677888777 77776655443
No 29
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.87 E-value=7.4e-20 Score=199.48 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHh---cCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 462 DKRWEDLDKATA---LDPTL-SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 462 ~eAi~d~~kAi~---ldP~~-~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
+.++..++++|. ++|.. +.+|+.+|.++...|++++|+.+|+++++++|+ +.+|+++|.++..+|++++|+..|+
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 778888999996 44443 778999999999999999999999999999997 6888899999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003249 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (836)
Q Consensus 537 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~ 616 (836)
++++++|++. .+|+++|.++..
T Consensus 123 ~Al~l~P~~~----------------------------------------------------------~a~~~lg~~l~~ 144 (296)
T PRK11189 123 SVLELDPTYN----------------------------------------------------------YAYLNRGIALYY 144 (296)
T ss_pred HHHHhCCCCH----------------------------------------------------------HHHHHHHHHHHH
Confidence 9999988773 456788888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
.|++++|++.++++++++|+++...... .+....+++++|++.|++++..
T Consensus 145 ~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 145 GGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHhh
Confidence 9999999999999999999998543322 2344678899999999877644
No 30
>PHA02790 Kelch-like protein; Provisional
Probab=99.86 E-value=1.1e-21 Score=227.51 Aligned_cols=155 Identities=15% Similarity=0.137 Sum_probs=134.6
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.-.+.+|||++++|+ +|+|||+|||++||||++||+++|+|+.+ +|++...++++++|+.||+|+|||++. ++.+||
T Consensus 17 ~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~nV 93 (480)
T PHA02790 17 SMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHNV 93 (480)
T ss_pred HhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-EecccH
Confidence 346789999887665 89999999999999999999999999965 566631269999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhcccCCCh--HH-----HHHHH
Q 003249 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND--ER-----VVEIF 328 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~~l~~--~~-----~~~ll 328 (836)
++||.+|+++.++.+++.|...|...+ +.+||+.++.+|..++...|...+.+++.+|+...... +. +.++|
T Consensus 94 ~~ll~aA~~Lqi~~v~~~C~~fL~~~l-~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~lL 172 (480)
T PHA02790 94 VNLLRASILTSVEFIIYTCINFILRDF-RKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLIL 172 (480)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHhc
Confidence 999999999999999999999998887 68899999999999999999999999999887764431 22 35678
Q ss_pred hccccc
Q 003249 329 SHANRQ 334 (836)
Q Consensus 329 ~~~~~~ 334 (836)
++|+..
T Consensus 173 ssd~L~ 178 (480)
T PHA02790 173 ESDELN 178 (480)
T ss_pred ccccCC
Confidence 887764
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=4.3e-18 Score=206.11 Aligned_cols=426 Identities=9% Similarity=-0.055 Sum_probs=314.2
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh--
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~-- 457 (836)
.+...+..+.+.+..|++++|+..|+++++.+|.. +...++.++...|+..+|+..+++++...|.........+.
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 45577888999999999999999999999998775 35588888889999999999999999333322222221121
Q ss_pred --cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 003249 458 --YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDV 535 (836)
Q Consensus 458 --~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~ 535 (836)
.++.++|++.|+++++++|+++.++..++.++.+.++.++|+..+++++..+|+...+..++.++..++++.+|++.|
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 245589999999999999999999999999999999999999999999999998655555677777788998899999
Q ss_pred HHHHhhCCCchhhhhhHHHHH--------HHHHHHHHhhhHh----------HHHHHHhhh--hccCccc---cc-chHH
Q 003249 536 QAILTLSPDYRMFEGRVAASQ--------LHMLVREHIDNWT----------IADCWLQLY--DRWSSVD---DI-GSLS 591 (836)
Q Consensus 536 ~~al~l~P~~~~~~~~~~~~~--------~~~~l~~~~~~~~----------~a~~~~~~~--~~~~~~~---~~-~aL~ 591 (836)
+++++++|++..++....... ...++.+..+.++ .+......- .-.++-+ .+ .+|+
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 999999999977543332111 1111111111111 110000000 0000111 11 1688
Q ss_pred HHHHHHhcC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 592 VIYQMLESD---APK----GVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEE 663 (836)
Q Consensus 592 ~~~~al~~~---P~~----~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~-P~~~eal~~~G~il~~~G~~eeAl~~~~~ 663 (836)
.+++.+... |.. -.+..-+-.++..++++.++++.|+...... |-=+.+....|..|..+++.++|+..|++
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 888888744 432 2233455568889999999999999988655 22344777889999999999999999999
Q ss_pred HHhcccc-------hHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCc------------cccchHHHHHHHHHHHHh
Q 003249 664 SIQMKRS-------FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS------------DRLRKGQALNNLGSVYVD 724 (836)
Q Consensus 664 Ai~l~p~-------~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~------------~~~~~~~a~~nlG~~y~~ 724 (836)
++.-+|. .......-|+ .++.+....+..++++..+..| .+++..++...++.++.-
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA----~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYS----LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHH----HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 9876531 1111222233 3566677777888877776444 122345788889999999
Q ss_pred cCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHH
Q 003249 725 CGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLE 798 (836)
Q Consensus 725 ~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~ 798 (836)
.|++.+|.+.+++.+...|. .....+|.++..+|...+|...++.+..++|++..++..++ .++++++|..-..
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999988765 56788899999999999999999999999999999998885 4588899988889
Q ss_pred HhHhcCCCCcccc
Q 003249 799 MVTQLDPLRVYPY 811 (836)
Q Consensus 799 ~Ai~l~P~~~~~y 811 (836)
+.++..|.+...-
T Consensus 509 ~l~~~~Pe~~~~~ 521 (822)
T PRK14574 509 DVISRSPEDIPSQ 521 (822)
T ss_pred HHHhhCCCchhHH
Confidence 9999999887443
No 32
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=5.7e-20 Score=200.36 Aligned_cols=123 Identities=19% Similarity=0.110 Sum_probs=112.2
Q ss_pred cCCHHHHHHHHHHHHh---cCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhh
Q 003249 492 KQNVEAALAEINRILG---FKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (836)
Q Consensus 492 ~g~~~eAi~~~~kai~---l~P~--~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 566 (836)
.++.+.+|+.++++|. ++|. ...|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~--------------------- 97 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM--------------------- 97 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------------
Confidence 4588999999999997 4553 4668899999999999999999999999988876
Q ss_pred hHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003249 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (836)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~ 646 (836)
+.+|+++|.++...|++++|++.|+++++++|++..++.++|.
T Consensus 98 -------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 98 -------------------------------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred -------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccchH
Q 003249 647 ILYDTSHCEEGLRKAEESIQMKRSFE 672 (836)
Q Consensus 647 il~~~G~~eeAl~~~~~Ai~l~p~~~ 672 (836)
+++.+|++++|++.|+++++++|++.
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999874
No 33
>PHA03098 kelch-like protein; Provisional
Probab=99.85 E-value=1.4e-20 Score=221.83 Aligned_cols=150 Identities=16% Similarity=0.252 Sum_probs=138.2
Q ss_pred CCCccccEEEEe--CCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHH
Q 003249 177 GDQVLRNVVFRI--HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL 254 (836)
Q Consensus 177 ~~~~~~DV~~~v--~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~ 254 (836)
.++.+|||+|++ +|++|+|||.||+++|+||++||+++|+ +.+|+|+ + ++++|+.||+|+|||++. ++.++
T Consensus 5 ~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~--~-~~~~~~~~l~y~Ytg~~~-i~~~~ 77 (534)
T PHA03098 5 ELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLN--I-DYDSFNEVIKYIYTGKIN-ITSNN 77 (534)
T ss_pred ccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEec--C-CHHHHHHHHHHhcCCceE-EcHHH
Confidence 378899999998 9999999999999999999999999997 5789999 6 999999999999999999 99999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhcc--------cCCChHHHHH
Q 003249 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELP--------DCLNDERVVE 326 (836)
Q Consensus 255 v~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~--------~~l~~~~~~~ 326 (836)
|++||.+|++|.++.|+..|+..+...+ +.++++.++.+|..++...|...|.+++.+|+. ..|+.+.+..
T Consensus 78 ~~~ll~~A~~l~~~~l~~~C~~~l~~~l-~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ 156 (534)
T PHA03098 78 VKDILSIANYLIIDFLINLCINYIIKII-DDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIK 156 (534)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhC-CHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHH
Confidence 9999999999999999999999998876 688999999999999999999999999887764 3466788899
Q ss_pred HHhccccc
Q 003249 327 IFSHANRQ 334 (836)
Q Consensus 327 ll~~~~~~ 334 (836)
+|++++..
T Consensus 157 ll~~~~L~ 164 (534)
T PHA03098 157 ILSDDKLN 164 (534)
T ss_pred HhcCCCcC
Confidence 99998764
No 34
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.4e-20 Score=201.32 Aligned_cols=283 Identities=18% Similarity=0.158 Sum_probs=223.9
Q ss_pred HHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHhcCCH
Q 003249 450 WMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE-CLELRFCFFLALEDY 528 (836)
Q Consensus 450 ~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~-~~~~rg~~~~~lg~~ 528 (836)
..+.....| .+|+.+|+.||.+.|+++..|.+|+.+++..++|++|.-+.++.++++|... .....+.++..+++.
T Consensus 57 n~~yk~k~Y---~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 57 NAFYKQKTY---GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred chHHHHhhH---HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHH
Confidence 344444444 7888889999999999999999999999999999999999999999999743 333347888888888
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhc---CCCCHH
Q 003249 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES---DAPKGV 605 (836)
Q Consensus 529 ~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~---~P~~~~ 605 (836)
.+|.+.|+ +.. ++ .. +. ++..+.+.+.. .|.-..
T Consensus 134 i~A~~~~~-------~~~-~~--~~-----------------an----------------al~~~~~~~~s~s~~pac~~ 170 (486)
T KOG0550|consen 134 IEAEEKLK-------SKQ-AY--KA-----------------AN----------------ALPTLEKLAPSHSREPACFK 170 (486)
T ss_pred HHHHHHhh-------hhh-hh--HH-----------------hh----------------hhhhhhcccccccCCchhhH
Confidence 88887766 111 11 00 00 01111111111 155556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~ 685 (836)
+-...+.++.-+|++++|+..--..+++++.+.++++.+|.+++..++.+.|+..|++++.++|+....
T Consensus 171 a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s----------- 239 (486)
T KOG0550|consen 171 AKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS----------- 239 (486)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH-----------
Confidence 667788899999999999999999999999999999999999999999999999999999999875200
Q ss_pred cCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch------hHHhhHHHHHHhcCC
Q 003249 686 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNN 759 (836)
Q Consensus 686 l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~------~A~~~la~~~~~~g~ 759 (836)
. .....+++-..+.+.|+-.++.|+|.+|-++|..||.|+|. ..+.|+|.+...+|+
T Consensus 240 ------k-----------~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr 302 (486)
T KOG0550|consen 240 ------K-----------SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR 302 (486)
T ss_pred ------H-----------hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC
Confidence 0 00112233467899999999999999999999999999874 357899999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCC
Q 003249 760 KTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPL 806 (836)
Q Consensus 760 ~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~ 806 (836)
.++|+.+.+.|++|+|.+-.||..|+ .++++++|+.||++|+++.-+
T Consensus 303 l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 303 LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999995 368899999999999988876
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=1.2e-18 Score=205.95 Aligned_cols=264 Identities=14% Similarity=-0.012 Sum_probs=201.8
Q ss_pred HHHHHHHHhh---ccchHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCC
Q 003249 386 FHQLGCVRLL---RKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (836)
Q Consensus 386 ~~~lG~~~~~---~g~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~ 460 (836)
++..|..+.. .+.+++|+..|++|++++|.+ +|.++|.++...+.. ++. ... +.
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~-----------------g~~-~~~---~~ 319 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQM-----------------GIF-DKQ---NA 319 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc-----------------CCc-ccc---hH
Confidence 4445544332 345789999999999987765 456666655433210 000 001 12
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 461 ~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
.++|+..+++|++++|+++.+|..+|.++...|++++|+..|++|++++|+ +.+++++|.++..+|++++|+..|++++
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al 399 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL 399 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999999997 5788899999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003249 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (836)
Q Consensus 540 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~ 619 (836)
+++|++..++ +.++.++...|+
T Consensus 400 ~l~P~~~~~~----------------------------------------------------------~~~~~~~~~~g~ 421 (553)
T PRK12370 400 KLDPTRAAAG----------------------------------------------------------ITKLWITYYHTG 421 (553)
T ss_pred hcCCCChhhH----------------------------------------------------------HHHHHHHHhccC
Confidence 9999874321 122334556789
Q ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHH
Q 003249 620 PEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 698 (836)
Q Consensus 620 ~~eAl~~~~~Al~l~-P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l 698 (836)
+++|++.++++++.+ |+++.++.++|.++..+|++++|++.+++.+...|..
T Consensus 422 ~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~--------------------------- 474 (553)
T PRK12370 422 IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG--------------------------- 474 (553)
T ss_pred HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh---------------------------
Confidence 999999999999875 8899999999999999999999999998877655543
Q ss_pred HHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC---CchhHHhhHHHHHHhcCCHHHHHHHHHHHHH
Q 003249 699 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI---RHTRAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (836)
Q Consensus 699 ~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l---~~~~A~~~la~~~~~~g~~~~A~~~~~kaie 772 (836)
..+++.++.+|...| ++|...+++.++. .+..... .+.++-..|+.+.+.-- .++++
T Consensus 475 -------------~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 475 -------------LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL-LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred -------------HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH-HHHHHHHHhhhHHHHHH-HHhhc
Confidence 246778888888888 5888888887664 2322333 77888888887777643 55443
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.3e-17 Score=180.78 Aligned_cols=312 Identities=15% Similarity=0.092 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHhcCCHHHHHHHHHHhHhccC-CchH--------H
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGW--------M 451 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~--~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~-~~~~--------a 451 (836)
+.-+|..|.++-+.|...+|+..|..++.--| -.||..|+.+-. -++..+..+.-.| +.-| +
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit-------~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT-------DIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc-------hHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 45778899999999999999999988876433 347776665431 1222222222112 1222 3
Q ss_pred HHHhhhcCChhhHHHHHHHHHhc-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhcC
Q 003249 452 YQERSLYCEGDKRWEDLDKATAL-DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALE 526 (836)
Q Consensus 452 y~~r~~~~~~~eAi~d~~kAi~l-dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~----~~~~~~rg~~~~~lg 526 (836)
|+... ..+++++.+.+-+.. -|++...-...|.+...+.++++|++.|+.+.+-+|- -+.|.|.-.+ +.
T Consensus 237 ~~el~---q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv---~~ 310 (559)
T KOG1155|consen 237 YQELH---QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV---KN 310 (559)
T ss_pred HHHHH---HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH---Hh
Confidence 33332 337888888888887 7888888888888888899999999999998888881 1333221111 11
Q ss_pred CHHHHHHHH-HHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHH
Q 003249 527 DYQAALCDV-QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (836)
Q Consensus 527 ~~~~Ai~d~-~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~ 605 (836)
+-. .+... +.+..+|.=-+ ...-.+++-+...++-++| +..+.++|.+||+...
T Consensus 311 ~~s-kLs~LA~~v~~idKyR~------ETCCiIaNYYSlr~eHEKA------------------v~YFkRALkLNp~~~~ 365 (559)
T KOG1155|consen 311 DKS-KLSYLAQNVSNIDKYRP------ETCCIIANYYSLRSEHEKA------------------VMYFKRALKLNPKYLS 365 (559)
T ss_pred hhH-HHHHHHHHHHHhccCCc------cceeeehhHHHHHHhHHHH------------------HHHHHHHHhcCcchhH
Confidence 100 00000 11111111000 0000111111122222222 3444555555555555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~ 685 (836)
+|-..|.-+...+...+|+++|++|+.++|.|..||+.+|++|--++...=|+=.|++|+++.|++
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-------------- 431 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPND-------------- 431 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc--------------
Confidence 555556666666666666666666666666666666666666666666666666666666655544
Q ss_pred cCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHH
Q 003249 686 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTA 763 (836)
Q Consensus 686 l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A 763 (836)
...|..||.+|.++++.++||.||.+|+....+ .++..+|.+|.+.++.++|
T Consensus 432 --------------------------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 432 --------------------------SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred --------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 235666666666666666666666666666554 5666666666666666666
Q ss_pred HHHHHHHHH
Q 003249 764 YEEMTKLIK 772 (836)
Q Consensus 764 ~~~~~kaie 772 (836)
-.-|.|-++
T Consensus 486 a~~yek~v~ 494 (559)
T KOG1155|consen 486 AQYYEKYVE 494 (559)
T ss_pred HHHHHHHHH
Confidence 666666664
No 37
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.83 E-value=7.3e-18 Score=176.32 Aligned_cols=325 Identities=17% Similarity=0.157 Sum_probs=233.0
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh
Q 003249 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (836)
Q Consensus 380 ~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~ 457 (836)
+....-+..+|..++.+|++.+|+..|.+||+.+|.. +++.+|.+|...|+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk--------------------------- 87 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK--------------------------- 87 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC---------------------------
Confidence 3455677889999999999999999999999887764 44555556655554
Q ss_pred cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----HHHHHHH------------HH
Q 003249 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----ECLELRF------------CF 521 (836)
Q Consensus 458 ~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~----~~~~~rg------------~~ 521 (836)
..-|+.|+++.+++.|++..+...||.+++++|++++|+++|+++|.-+|+. ++...++ .-
T Consensus 88 ---sk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 88 ---SKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred ---CccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 3668888999999999999999999999999999999999999999999942 3332222 12
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCC
Q 003249 522 FLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 601 (836)
Q Consensus 522 ~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P 601 (836)
+..-||+..||+...+.|++.|=.+..+. -+|.|+....+ -..++.+..++-.+..
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda~l~~------------------~Rakc~i~~~e------~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDASLRQ------------------ARAKCYIAEGE------PKKAIHDLKQASKLSQ 220 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchhHHHH------------------HHHHHHHhcCc------HHHHHHHHHHHHhccc
Confidence 45679999999999999999996654221 13445544322 1236788888999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL 681 (836)
++.+++|..+.++...|+.+.++...+.-++++|++---+- -|.++.+..+.|+..+++|+-.. |..+
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~----~YKklkKv~K~les~e~~ie~~~-----~t~c--- 288 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP----FYKKLKKVVKSLESAEQAIEEKH-----WTEC--- 288 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH----HHHHHHHHHHHHHHHHHHHhhhh-----HHHH---
Confidence 99999999999999999999999999999999999754431 12233344444444444443211 1111
Q ss_pred hccccCCCChhHHHHHHHHHhcCCcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcC
Q 003249 682 ADSSQDSSCSSTVVSLLEDALKCPSDRL-RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKN 758 (836)
Q Consensus 682 ~~~~l~~~~~~~~i~~l~~Al~~~~~~~-~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g 758 (836)
++..++.++..+..+ -....+.-+..+|..-|++-+||.-++++|+++|. .++..+|.+|....
T Consensus 289 -------------le~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 289 -------------LEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred -------------HHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 111111222111100 00112233445667778999999999999998775 56788888999999
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHH
Q 003249 759 NKTTAYEEMTKLIKKARNNASAYEK 783 (836)
Q Consensus 759 ~~~~A~~~~~kaie~~p~~a~Ay~~ 783 (836)
+|+.||.+|.+|.|.+|+|-.+-..
T Consensus 356 ~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHH
Confidence 9999999999999999999877654
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=5e-17 Score=196.89 Aligned_cols=384 Identities=11% Similarity=-0.003 Sum_probs=292.1
Q ss_pred cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHH-H---HHhhhcCChhhHHHHHHHHHhcCCCChHHHHHH--H
Q 003249 413 GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWM-Y---QERSLYCEGDKRWEDLDKATALDPTLSYPYMYR--A 486 (836)
Q Consensus 413 ~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~a-y---~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~r--g 486 (836)
+++...+..+.+.+++|++..|+..+.++++.+|+.+.+ + .-.+..+..++|+..+++++ +|++..++..+ |
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA 109 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAA 109 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHH
Confidence 445566777788999999999999999999999987422 1 11233466699999999999 77666666666 7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHh
Q 003249 487 SSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (836)
Q Consensus 487 ~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~ 565 (836)
.++..+|++++|++.|+++++.+|+ ++++..++.++...|+.++|+..+++++.++|++..+... ..++...
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l-------ayL~~~~ 182 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL-------SYLNRAT 182 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH-------HHHHHhc
Confidence 7999999999999999999999997 5677777889999999999999999999999996443211 1111111
Q ss_pred hhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-------------------------
Q 003249 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP------------------------- 620 (836)
Q Consensus 566 ~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~------------------------- 620 (836)
+.. ..++..+.++++.+|++..++..+..++.++|-.
T Consensus 183 ~~~------------------~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~ 244 (822)
T PRK14574 183 DRN------------------YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERD 244 (822)
T ss_pred chH------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHH
Confidence 111 1257888899999999998888887766654333
Q ss_pred -----------------------HHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 621 -----------------------EAAMRSLQLARQHAASDHE-------RLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 621 -----------------------~eAl~~~~~Al~l~P~~~e-------al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
+.|++.++..+..-|.+|+ +..-+=.++...|++.++++.|+..-.....
T Consensus 245 ~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 245 AAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 3355566666663333332 2233445677889999999999877654423
Q ss_pred hHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccc---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc----
Q 003249 671 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR---KGQALNNLGSVYVDCGQLDLAADCYSNALKIRH---- 743 (836)
Q Consensus 671 ~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~---~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~---- 743 (836)
.++|-.. +.++..+....+..+..+|..++...+.... .......|-.+|.+.++|++|....++..+-.|
T Consensus 325 ~P~y~~~--a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 325 MPDYARR--WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 3333333 2345556677888889999988775432111 123357889999999999999999999987322
Q ss_pred -------------hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHc----cCHHHHHHHHHHhHhcCCC
Q 003249 744 -------------TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPL 806 (836)
Q Consensus 744 -------------~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~----~~~~~A~~D~~~Ai~l~P~ 806 (836)
..+...++.++...|++.+|++.+++....+|.|++....+..+ |....|..-+.+|..++|.
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 14677889999999999999999999999999999999998654 8899999999999999999
Q ss_pred CcccchhhHHHHHHHhhhh
Q 003249 807 RVYPYRYRAAGLIVFLNLH 825 (836)
Q Consensus 807 ~~~~y~~r~~~~~~~~~~~ 825 (836)
+..++..+|.+.|.-++..
T Consensus 483 ~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 483 SLILERAQAETAMALQEWH 501 (822)
T ss_pred cHHHHHHHHHHHHhhhhHH
Confidence 9999999999999887754
No 39
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=1.2e-18 Score=190.54 Aligned_cols=142 Identities=13% Similarity=0.143 Sum_probs=102.0
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCchhhh
Q 003249 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSPDYRMFE 549 (836)
Q Consensus 472 i~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg-~~~~Ai~d~~~al~l~P~~~~~~ 549 (836)
|...|++..++..+-.++...+++++|+..++++|+++|+ ..+|+.||.++..+| ++++|+..++++++.+|++..
T Consensus 30 i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq-- 107 (320)
T PLN02789 30 IAYTPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ-- 107 (320)
T ss_pred eeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH--
Confidence 4445666667766666677788888999999999999996 578888888888888 578888888888888777643
Q ss_pred hhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--HHHHHHH
Q 003249 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP--EAAMRSL 627 (836)
Q Consensus 550 ~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~--~eAl~~~ 627 (836)
+|+.|+.++.++++. ++++..+
T Consensus 108 --------------------------------------------------------aW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 108 --------------------------------------------------------IWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred --------------------------------------------------------HhHHHHHHHHHcCchhhHHHHHHH
Confidence 344445455555542 5566667
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 628 ~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+++++++|++..+|.+|||++..+|++++|++.++++|+++|++
T Consensus 132 ~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 132 RKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 77777777777777777777777777777777777777766554
No 40
>PLN02789 farnesyltranstransferase
Probab=99.82 E-value=4.2e-18 Score=186.41 Aligned_cols=197 Identities=11% Similarity=0.043 Sum_probs=163.7
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCH--HHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKLA-LECLELRFCFFLALEDY--QAALCDVQA 537 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g-~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~--~~Ai~d~~~ 537 (836)
++|+..++++|+++|++..+|.+||.++..+| ++++|+..++++|+.+|+ ..+|++|++++..+|+. ++++..++
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~- 132 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTR- 132 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHH-
Confidence 78888999999999999999999999999999 689999999999999997 68999999999888863 44444444
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003249 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (836)
Q Consensus 538 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l 617 (836)
++|+.+|++..+|..||.++..+
T Consensus 133 ---------------------------------------------------------kal~~dpkNy~AW~~R~w~l~~l 155 (320)
T PLN02789 133 ---------------------------------------------------------KILSLDAKNYHAWSHRQWVLRTL 155 (320)
T ss_pred ---------------------------------------------------------HHHHhCcccHHHHHHHHHHHHHh
Confidence 45555555667888999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCC
Q 003249 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT---SHC----EEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSC 690 (836)
Q Consensus 618 ~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~---G~~----eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~ 690 (836)
|++++|++.++++|+++|.+..+|++||.++..+ |.+ +++++...++|.++|++
T Consensus 156 ~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N------------------- 216 (320)
T PLN02789 156 GGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN------------------- 216 (320)
T ss_pred hhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC-------------------
Confidence 9999999999999999999999999999999887 333 57888888999988877
Q ss_pred hhHHHHHHHHHhcCCccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHh
Q 003249 691 SSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRH--TRAHQGLARVHFL 756 (836)
Q Consensus 691 ~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~----~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~ 756 (836)
..+|+++|.++.. +++..+|++.+.+++..++ ..|..-++.++..
T Consensus 217 ---------------------~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 217 ---------------------ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ---------------------cCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 2467888888777 5667788888888887654 3566677777754
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.1e-17 Score=183.23 Aligned_cols=265 Identities=15% Similarity=0.124 Sum_probs=224.2
Q ss_pred CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~ 537 (836)
++.++-....+..+++||-+...+--.-..+.++|+..+=...=.+.++..|+ +-.|+..|.-|...|++.+|.++|.|
T Consensus 258 c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SK 337 (611)
T KOG1173|consen 258 CRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSK 337 (611)
T ss_pred ChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence 44578888899999999999999876666999999999988888899999997 56799999999999999999999999
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003249 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (836)
Q Consensus 538 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l 617 (836)
+..+||.|.++|...|- .+...+.-+ .++++|..|-++-|+.-.-.+-.|+-+.+.
T Consensus 338 at~lD~~fgpaWl~fgh------sfa~e~Ehd------------------QAmaaY~tAarl~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 338 ATTLDPTFGPAWLAFGH------SFAGEGEHD------------------QAMAAYFTAARLMPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HhhcCccccHHHHHHhH------HhhhcchHH------------------HHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence 99999999875543221 111111112 258899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHH
Q 003249 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 697 (836)
Q Consensus 618 ~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~ 697 (836)
|.++-|-..|.+|..+.|+||-.+..+|.+.+..+.|.+|+..|+++++--++. .++..
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~---------------~~e~~------ 452 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV---------------LNEKI------ 452 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc---------------ccccc------
Confidence 999999999999999999999999999999999999999999999998422211 11110
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 003249 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (836)
Q Consensus 698 l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p 775 (836)
.=...++|+|-+|.+++++++||.+|++||.+.| ...|..+|-+|..+|+++.|++.|.|++-++|
T Consensus 453 ------------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 453 ------------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred ------------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 0124689999999999999999999999999865 47899999999999999999999999999999
Q ss_pred CCHHH
Q 003249 776 NNASA 780 (836)
Q Consensus 776 ~~a~A 780 (836)
+|-.+
T Consensus 521 ~n~~~ 525 (611)
T KOG1173|consen 521 DNIFI 525 (611)
T ss_pred ccHHH
Confidence 99433
No 42
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.79 E-value=2.1e-19 Score=190.05 Aligned_cols=148 Identities=22% Similarity=0.322 Sum_probs=131.2
Q ss_pred CCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCC--CCHHH
Q 003249 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNG--VTPNL 254 (836)
Q Consensus 177 ~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~--~~~~~ 254 (836)
-+.+.+||+|+|++++|+|||+|||++|.|||+|++|||.|+.+..|.|.+ ...++|+.+|.|||||++.. +..+.
T Consensus 40 ~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~--t~~eAF~~lLrYiYtg~~~l~~~~ed~ 117 (620)
T KOG4350|consen 40 TSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQE--TNSEAFRALLRYIYTGKIDLAGVEEDI 117 (620)
T ss_pred hcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccccc--ccHHHHHHHHHHHhhcceecccchHHH
Confidence 356789999999999999999999999999999999999999999999994 88999999999999999872 34677
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhcccCCChHHHHHH
Q 003249 255 LLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEI 327 (836)
Q Consensus 255 v~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~~l~~~~~~~l 327 (836)
+++.|.+|++|....|+..++..++..+ ..++++.+++.|-.++...|...|+.+.-+|--..|.++.+..+
T Consensus 118 lld~LslAh~Ygf~~Le~aiSeYl~~iL-~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~L 189 (620)
T KOG4350|consen 118 LLDYLSLAHRYGFIQLETAISEYLKEIL-KNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRL 189 (620)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHH-cccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhh
Confidence 8999999999999999999999999876 46788889999999999999999999988887666655555444
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=1.3e-15 Score=176.63 Aligned_cols=130 Identities=16% Similarity=0.081 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCCh
Q 003249 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (836)
Q Consensus 384 ~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~ 461 (836)
..+...++..+.+|++++|++.+..+|+.+|. -+|..||.+|..+|+.++++..
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~------------------------ 195 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNF------------------------ 195 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHH------------------------
Confidence 34555667778889999999999999998764 4788999999999987666555
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
.-.|-.|+|++.+-|..++....++|.+++|+-.|+|||+.+|.. ...+.|..+|.++|++..|...|.++++
T Consensus 196 ------~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 196 ------WLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred ------HHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 456778899999999999999999999999999999999999964 6677789999999999999999999999
Q ss_pred hCC
Q 003249 541 LSP 543 (836)
Q Consensus 541 l~P 543 (836)
++|
T Consensus 270 ~~p 272 (895)
T KOG2076|consen 270 LDP 272 (895)
T ss_pred hCC
Confidence 999
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=1.9e-15 Score=172.28 Aligned_cols=305 Identities=13% Similarity=0.056 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~ 458 (836)
.++......|...+..|+++.|.+...++.+..|. ..+.-.|++...+|+++.|...
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~--------------------- 140 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQH--------------------- 140 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHH---------------------
Confidence 35666678899999999999999999998887544 3445557777777876666555
Q ss_pred CChhhHHHHHHHHHhcCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 459 CEGDKRWEDLDKATALDPTLS-YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~-~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
|.++.+..|++. .....++.++.+.|++++|++.+++.++..|+ +.++...+.++...||+++|++.+.
T Consensus 141 ---------l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 141 ---------LEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred ---------HHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666777777775 45666788999999999999999999999996 5778888999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCC----CCHHHHHHHHH
Q 003249 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA----PKGVLYFRQSL 612 (836)
Q Consensus 537 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P----~~~~~~~~~gl 612 (836)
+.++..+...............+.+ +.+. .......+.++.+..| +++.++...+.
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~~l-------~~~~-------------~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~ 271 (409)
T TIGR00540 212 NMAKAGLFDDEEFADLEQKAEIGLL-------DEAM-------------ADEGIDGLLNWWKNQPRHRRHNIALKIALAE 271 (409)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHH-------HHHH-------------HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHH
Confidence 9998754432211111000000001 0000 0011334445555555 46777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCC
Q 003249 613 LLLRLNCPEAAMRSLQLARQHAASDHERL--VYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSC 690 (836)
Q Consensus 613 ~l~~l~~~~eAl~~~~~Al~l~P~~~eal--~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~ 690 (836)
.+...|++++|++.++++++..|++.... ..+.....+.++.+++++.++++++.+|++
T Consensus 272 ~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~------------------- 332 (409)
T TIGR00540 272 HLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK------------------- 332 (409)
T ss_pred HHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC-------------------
Confidence 77777777777777777777777776532 334444444566666666666666555544
Q ss_pred hhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHH--HHHcCCch-hHHhhHHHHHHhcCCHHHHHHHH
Q 003249 691 SSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYS--NALKIRHT-RAHQGLARVHFLKNNKTTAYEEM 767 (836)
Q Consensus 691 ~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~--kAL~l~~~-~A~~~la~~~~~~g~~~~A~~~~ 767 (836)
+. +..+..+|-++...|++++|.+.|+ ++++..|. ..+..+|.++...|+.++|...|
T Consensus 333 ------------------~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 333 ------------------PK-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred ------------------hh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 21 2567899999999999999999999 57777664 35669999999999999999999
Q ss_pred HHHHHh
Q 003249 768 TKLIKK 773 (836)
Q Consensus 768 ~kaie~ 773 (836)
.++++.
T Consensus 394 ~~~l~~ 399 (409)
T TIGR00540 394 QDSLGL 399 (409)
T ss_pred HHHHHH
Confidence 998754
No 45
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.4e-17 Score=175.52 Aligned_cols=290 Identities=14% Similarity=0.076 Sum_probs=229.8
Q ss_pred hhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHH
Q 003249 377 ETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE 454 (836)
Q Consensus 377 ~~~~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~ 454 (836)
...-+.+.-....|..+...++|.+|+..|..||+..|.. .|.+.+..+...|++++|.....+.+.+.|...+.+..
T Consensus 43 ~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r 122 (486)
T KOG0550|consen 43 QEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR 122 (486)
T ss_pred chHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence 3445566777889999999999999999999999986654 57788889999999999999999999998877776544
Q ss_pred hhhcC----ChhhH---HH---------HHHHHHhcCCCCh------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 003249 455 RSLYC----EGDKR---WE---------DLDKATALDPTLS------YPYMYRASSLMTKQNVEAALAEINRILGFKLA- 511 (836)
Q Consensus 455 r~~~~----~~~eA---i~---------d~~kAi~ldP~~~------~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~- 511 (836)
-+... ...+| +. .+.+...+-|.+. .+-...+.++.-+|++++|+..--.++++++.
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n 202 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN 202 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch
Confidence 43321 11111 11 1222222333332 34456778899999999999999999999996
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHH
Q 003249 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (836)
Q Consensus 512 ~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~ 591 (836)
.++++.||.++.-.++.+.|+..|+++|.++|++...-
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk------------------------------------------ 240 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK------------------------------------------ 240 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH------------------------------------------
Confidence 58999999999999999999999999999999984310
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE----RLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e----al~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
.....|+.-..+..+|.-..+.|++..|.++|..||.++|++.. .|.+|+.+...+|+..+||.+.+.|++|
T Consensus 241 ----~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i 316 (486)
T KOG0550|consen 241 ----SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI 316 (486)
T ss_pred ----hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc
Confidence 11223566677888999999999999999999999999999865 4889999999999999999999999999
Q ss_pred ccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-hH
Q 003249 668 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RA 746 (836)
Q Consensus 668 ~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-~A 746 (836)
+|++ ..+|.-+|.++..+++|++|+++|++|++...+ ..
T Consensus 317 D~sy----------------------------------------ikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 317 DSSY----------------------------------------IKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred CHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 8766 246788899999999999999999999998433 33
Q ss_pred HhhHHH
Q 003249 747 HQGLAR 752 (836)
Q Consensus 747 ~~~la~ 752 (836)
+..+..
T Consensus 357 r~~l~~ 362 (486)
T KOG0550|consen 357 RRTLRE 362 (486)
T ss_pred HHHHHH
Confidence 333433
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=2.6e-18 Score=185.67 Aligned_cols=245 Identities=16% Similarity=0.169 Sum_probs=101.6
Q ss_pred hhHHHHHHHH-Hhc-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 462 DKRWEDLDKA-TAL-DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (836)
Q Consensus 462 ~eAi~d~~kA-i~l-dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~a 538 (836)
++|++.+.++ ... +|+++..|..+|.+...++++++|+..|+++++.+|. +..+...+.+ ...+++++|+..++++
T Consensus 25 ~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~ 103 (280)
T PF13429_consen 25 EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKA 103 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 4444445433 333 3677777777777777777777777777777777775 3444444444 5777777777777777
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Q 003249 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD--APKGVLYFRQSLLLLR 616 (836)
Q Consensus 539 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~--P~~~~~~~~~gl~l~~ 616 (836)
.+..++.. ++.. ...++...++|+++. ..+.++.+.. |.++..|..+|.++.+
T Consensus 104 ~~~~~~~~-~l~~------~l~~~~~~~~~~~~~------------------~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 104 YERDGDPR-YLLS------ALQLYYRLGDYDEAE------------------ELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------H-HHHTT-HHHHH------------------HHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccccc-hhhH------HHHHHHHHhHHHHHH------------------HHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 66554431 1111 011223334444442 2223322222 6788899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHH
Q 003249 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS 696 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~ 696 (836)
.|++++|+++|++|++++|++++++..++|++.++|++++|.+..++..+..|++
T Consensus 159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~------------------------- 213 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD------------------------- 213 (280)
T ss_dssp CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-------------------------
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-------------------------
Confidence 9999999999999999999999999999999999999999766655554432222
Q ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHH
Q 003249 697 LLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (836)
Q Consensus 697 ~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie 772 (836)
+..+..+|.+|..+|++++|+..|+++++.+|. ..+..+|.++...|+.++|+.-+.++++
T Consensus 214 ---------------~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 214 ---------------PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp ---------------CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ---------------HHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 245778999999999999999999999997664 6789999999999999999998888775
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=2.1e-16 Score=162.29 Aligned_cols=194 Identities=14% Similarity=0.101 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~ 557 (836)
+..+.++|.++...|++++|+..++++++.+|+ ..++..+|.++..+|++++|+..|+++++++|++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----------- 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------
Confidence 456666666666677777777777776666665 34555566666666666666666666666655542
Q ss_pred HHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C
Q 003249 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--A 635 (836)
Q Consensus 558 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~--P 635 (836)
..+++.|.++...|++++|+..++++++.. |
T Consensus 100 -----------------------------------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 132 (234)
T TIGR02521 100 -----------------------------------------------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP 132 (234)
T ss_pred -----------------------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 223344444555555555555555555532 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHH
Q 003249 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL 715 (836)
Q Consensus 636 ~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~ 715 (836)
.....+.++|.++..+|++++|+..|+++++++|+. +.++
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------------------------------------~~~~ 172 (234)
T TIGR02521 133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR----------------------------------------PESL 172 (234)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----------------------------------------hHHH
Confidence 444555555555555555555555555555544332 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHH
Q 003249 716 NNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 770 (836)
Q Consensus 716 ~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~ka 770 (836)
..+|.++...|++++|+..+++++++.+. .....++.++...|+.++|.....++
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555555555555555554321 33344455555555555555444333
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.7e-16 Score=168.77 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=38.4
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003249 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (836)
Q Consensus 471 Ai~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~ 544 (836)
+..+|.--++...-.|+-|.-.++.+.|+..|++|+++||+. .+|...|--|.++.....||+.|++|+.++|.
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 344444444455555555555555555555555555555542 44444555555555555555555555555553
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=3.1e-16 Score=161.12 Aligned_cols=184 Identities=17% Similarity=0.077 Sum_probs=158.6
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|+..++++++.+|++..++..+|.++..+|++++|+..|++++++.|+ ...+.++|.++..+|++++|+..|+++++
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555588889999999999999999999999999999999999999997 57788899999999999999999999997
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~ 620 (836)
..+. |.....++++|.++...|++
T Consensus 128 ~~~~--------------------------------------------------------~~~~~~~~~l~~~~~~~g~~ 151 (234)
T TIGR02521 128 DPLY--------------------------------------------------------PQPARSLENAGLCALKAGDF 151 (234)
T ss_pred cccc--------------------------------------------------------ccchHHHHHHHHHHHHcCCH
Confidence 5321 22345567788899999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHH
Q 003249 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLED 700 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~ 700 (836)
++|...++++++.+|++++++..+|.+++.+|++++|+..+++++++.|..
T Consensus 152 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------- 202 (234)
T TIGR02521 152 DKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT----------------------------- 202 (234)
T ss_pred HHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------------------
Confidence 999999999999999999999999999999999999999999999764433
Q ss_pred HhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 701 ALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 701 Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+..+..++.++...|+.++|....+++.++
T Consensus 203 -----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 203 -----------AESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred -----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 245567788888899999999888776654
No 50
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=7.7e-17 Score=179.59 Aligned_cols=220 Identities=15% Similarity=0.093 Sum_probs=165.5
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 461 ~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
..+|.-.|+.|+.-||.++++|..+|.+..+.++-..||..+.++++++|+ .+++..+|..|...|.-.+|+..+.+-|
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi 380 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWI 380 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 378888999999999999999999999999999999999999999999997 5889999999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccch----HHHHHHHHhcCC--CCHHHHHHHHHH
Q 003249 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS----LSVIYQMLESDA--PKGVLYFRQSLL 613 (836)
Q Consensus 540 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~a----L~~~~~al~~~P--~~~~~~~~~gl~ 613 (836)
+-.|.|.. .+.+. .-.. +...+++.+..- ...|..+-...| .++..+..+|++
T Consensus 381 ~~~p~y~~--l~~a~------------~~~~-------~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 381 RNKPKYVH--LVSAG------------ENED-------FENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HhCccchh--ccccC------------cccc-------ccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 99998842 11000 0000 000011111111 123344444556 567777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhH
Q 003249 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 693 (836)
Q Consensus 614 l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~ 693 (836)
+.-.++++.|+.||+.|++.+|+|.-.|+.+|-++-.-.+.+|||+.|++|++|+|+|
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y---------------------- 497 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY---------------------- 497 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe----------------------
Confidence 7777777777777777777777777777777777777777777777777777777776
Q ss_pred HHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 694 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 694 ~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
..+.+|+|..++.+|-|+||+..|-.||.+
T Consensus 498 ------------------VR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 498 ------------------VRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred ------------------eeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 235677777777777777777777777776
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=6.5e-15 Score=167.31 Aligned_cols=305 Identities=13% Similarity=0.092 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~--~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~ 458 (836)
.++...+..|......|++++|++...++-+.. |.-.+.-.+++...+|+++.|..
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~---------------------- 139 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQ---------------------- 139 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHH----------------------
Confidence 466777889999999999999988777765542 22223333445566666555544
Q ss_pred CChhhHHHHHHHHHhcCCCChHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 459 CEGDKRWEDLDKATALDPTLSYPY-MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~~ay-~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
.|.+|.+.+|++..+. ...+.++...|++++|++.++++++.+|+ +.++...+.+|...|++++|++-+.
T Consensus 140 --------~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~ 211 (398)
T PRK10747 140 --------HLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILP 211 (398)
T ss_pred --------HHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4778888888875443 44588889999999999999999999996 5777778899999999999998888
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003249 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (836)
Q Consensus 537 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~ 616 (836)
+..+..+....-..++......+.+....+.-+ .+. ....+.+.-...|+++.++...+..+..
T Consensus 212 ~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~-~~~---------------l~~~w~~lp~~~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 212 SMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG-SEG---------------LKRWWKNQSRKTRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC-HHH---------------HHHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence 888877664332221111111111111111000 000 0111122223347788899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHH
Q 003249 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS 696 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~ 696 (836)
.|+.++|...++++++ .|.+++.....|.+ ..|+.++|++..++.++.+|++
T Consensus 276 ~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~------------------------- 327 (398)
T PRK10747 276 CDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDT------------------------- 327 (398)
T ss_pred CCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCC-------------------------
Confidence 9999999999999999 55566666556655 3488999988888888776665
Q ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchh-HHhhHHHHHHhcCCHHHHHHHHHHHHHhc
Q 003249 697 LLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR-AHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (836)
Q Consensus 697 ~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~-A~~~la~~~~~~g~~~~A~~~~~kaie~~ 774 (836)
+..+..+|.++...|++++|.+.|+++++++|+. .+.-++.++...|+.++|...|.++++..
T Consensus 328 ---------------~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 328 ---------------PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4678899999999999999999999999998875 46899999999999999999999998754
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=3e-17 Score=177.38 Aligned_cols=159 Identities=16% Similarity=0.087 Sum_probs=42.4
Q ss_pred HHHHHHhhccchHHHHHHHHHHHh-c---cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc---CC
Q 003249 388 QLGCVRLLRKEYDEAEHLFEAAVN-A---GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY---CE 460 (836)
Q Consensus 388 ~lG~~~~~~g~y~eAi~~f~~Al~-l---~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~---~~ 460 (836)
.++.++...|++++|++.+++++. . +....|..+|.+....|+++.|...|.+++..++.....+.....+ +.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~ 92 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 558888899999999999965543 2 2334667788888888888888888888887776655555444332 44
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---ALECLELRFCFFLALEDYQAALCDVQA 537 (836)
Q Consensus 461 ~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P---~~~~~~~rg~~~~~lg~~~~Ai~d~~~ 537 (836)
+++|+..+.++.+.++ ++..+.....++...++++++...++++.+..+ ++..+..+|.++.+.|+.++|+++|++
T Consensus 93 ~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 93 PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4777777777776554 455666666777888888888888888776552 345566778888888888888888888
Q ss_pred HHhhCCCchh
Q 003249 538 ILTLSPDYRM 547 (836)
Q Consensus 538 al~l~P~~~~ 547 (836)
|++++|++..
T Consensus 172 al~~~P~~~~ 181 (280)
T PF13429_consen 172 ALELDPDDPD 181 (280)
T ss_dssp HHHH-TT-HH
T ss_pred HHHcCCCCHH
Confidence 8888887754
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.3e-15 Score=169.11 Aligned_cols=264 Identities=14% Similarity=0.066 Sum_probs=210.0
Q ss_pred HHHHhhccchHHHHHHHHHHHhccchhh---HhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----CChh
Q 003249 390 GCVRLLRKEYDEAEHLFEAAVNAGHIYS---IAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGD 462 (836)
Q Consensus 390 G~~~~~~g~y~eAi~~f~~Al~l~~~~a---~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~~~~ 462 (836)
+..++.+++|.+-.+.++..++.+|... -..+| .++..|+..+=+..-.+.+..+|+.+-.|..-|.| +...
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcH
Confidence 3445667788888888888888865442 23445 56777877777777788899999888888877765 5568
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003249 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (836)
Q Consensus 463 eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l 541 (836)
+|...|.||+.+||.+..+|...|.++.-.|.-|+|++.|.+|-++=|. ..-....|.-|..++.++-|-..|.+|+.+
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai 409 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI 409 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999885 333455899999999999999999999999
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003249 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (836)
Q Consensus 542 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~ 621 (836)
.|+++.-+.-++ .+.-..+.|..|..|.+- ++..+...+.-.+.=...+.|+|.++.++|+++
T Consensus 410 ~P~Dplv~~Elg------vvay~~~~y~~A~~~f~~-----------~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 410 APSDPLVLHELG------VVAYTYEEYPEALKYFQK-----------ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred CCCcchhhhhhh------heeehHhhhHHHHHHHHH-----------HHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 999875443332 333334556666554331 122222222222323456889999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 622 eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+|+..|++|+.+.|+++.++-..|.++..+|+++.|++.|.+|+.++|++
T Consensus 473 eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 473 EAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999987
No 54
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=2.6e-16 Score=175.50 Aligned_cols=230 Identities=14% Similarity=0.072 Sum_probs=185.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH
Q 003249 483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (836)
Q Consensus 483 ~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l 561 (836)
+.-|..+++.|...+|+-.|..|+.-+|. .++|..+|.+..+.++-..||..++++++|+|++..++-.+++.+.=+++
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45789999999999999999999999997 58999999999999999999999999999999998877666654432221
Q ss_pred HHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHH--HHH-----HHHHcCCHHHHHHHHHHHHHcC
Q 003249 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR--QSL-----LLLRLNCPEAAMRSLQLARQHA 634 (836)
Q Consensus 562 ~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~--~gl-----~l~~l~~~~eAl~~~~~Al~l~ 634 (836)
. ..++..+++.|...|.....-.. .+. -...-..+..-.+.|-.|...+
T Consensus 369 q------------------------~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 369 Q------------------------NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL 424 (579)
T ss_pred H------------------------HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC
Confidence 1 12355556666665544322211 000 0001111233446677888888
Q ss_pred C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchH
Q 003249 635 A--SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712 (836)
Q Consensus 635 P--~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~ 712 (836)
| .|++++.-+|.+|+-.|+|+.|+++|+.||..+|++ .
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd----------------------------------------~ 464 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND----------------------------------------Y 464 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch----------------------------------------H
Confidence 8 899999999999999999999999999999998877 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~ 776 (836)
..||-||.++..-.+.+|||..|++||+|.|. ++.+|+|..+..+|.|++|.+.|-.||.+.++
T Consensus 465 ~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 465 LLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 57999999999999999999999999999875 89999999999999999999999999987655
No 55
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.68 E-value=1.8e-14 Score=167.60 Aligned_cols=404 Identities=16% Similarity=0.084 Sum_probs=282.0
Q ss_pred HhhccchHHHHHHHHHHHhccchhh--HhhHHH-----HHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcC----Ch
Q 003249 393 RLLRKEYDEAEHLFEAAVNAGHIYS--IAGLAR-----LGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC----EG 461 (836)
Q Consensus 393 ~~~~g~y~eAi~~f~~Al~l~~~~a--~~~la~-----~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~----~~ 461 (836)
......+.++--+|.++++..-.-+ ....+. .-..+.+...|+..+-+++.++++.+.+|...|.|+ +.
T Consensus 429 s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm 508 (1238)
T KOG1127|consen 429 SFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDM 508 (1238)
T ss_pred hcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 3444556666666665555421111 111111 113344567788888889999999999998888753 33
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL---ECLELRFCFFLALEDYQAALCDVQAI 538 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~---~~~~~rg~~~~~lg~~~~Ai~d~~~a 538 (836)
..|..+|++|.+|||+++.++-..+.++.+...+++|.+..-++-+..|-. ..|..||..|.+.++.-+|+.+|+.|
T Consensus 509 ~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsA 588 (1238)
T KOG1127|consen 509 KRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSA 588 (1238)
T ss_pred HHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHH
Confidence 578999999999999999999999999999999999999988888888842 44667999999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCccccc-chHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003249 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI-GSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (836)
Q Consensus 539 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~-~aL~~~~~al~~~P~~~~~~~~~gl~l~~l 617 (836)
++.+|++...+. .+.+.+.+.... .++.+++++..++|.+.-..|..+......
T Consensus 589 LR~dPkD~n~W~-------------------------gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 589 LRTDPKDYNLWL-------------------------GLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hcCCchhHHHHH-------------------------HHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 999998854322 222222222222 268899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhccc--------chH-HHHHHHHHh
Q 003249 618 NCPEAAMRSLQLARQHAASDH-------ERLVYEGWILYDTSHCEEGLRKAEESIQMKR--------SFE-AFFLKAYAL 681 (836)
Q Consensus 618 ~~~~eAl~~~~~Al~l~P~~~-------eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p--------~~~-a~~~~a~aL 681 (836)
|+|++|+..+...+.-..... |.+...+..++-+|-+-.|.+.++++|+.-- ++- .+-..+.+.
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 999999999998887665554 4444444445566777788888888875310 000 000000000
Q ss_pred -hccccCCCChhH--HHH---------------HHHHHhcCCccccc---hHHHHHHHHHHHHh--------cCCHHHHH
Q 003249 682 -ADSSQDSSCSST--VVS---------------LLEDALKCPSDRLR---KGQALNNLGSVYVD--------CGQLDLAA 732 (836)
Q Consensus 682 -~~~~l~~~~~~~--~i~---------------~l~~Al~~~~~~~~---~~~a~~nlG~~y~~--------~g~~deAi 732 (836)
--..+.|+-... .+- ++--+.+|....+. .+..|+|+|.-|.. ..+-..|+
T Consensus 724 ~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai 803 (1238)
T KOG1127|consen 724 YIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAI 803 (1238)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHH
Confidence 000011111000 000 11112223222222 13579999988776 22335799
Q ss_pred HHHHHHHcCC--chhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHc----cCHHHHHHHHHHhHhcCCC
Q 003249 733 DCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY----CDRELTRADLEMVTQLDPL 806 (836)
Q Consensus 733 ~~y~kAL~l~--~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~----~~~~~A~~D~~~Ai~l~P~ 806 (836)
.|+.+|+++. ...-...||.+ -..|.+.-|.-.|.|++-.+|.+.-+|.|.+-+ .|.+-|-..|+++..|||.
T Consensus 804 ~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~ 882 (1238)
T KOG1127|consen 804 RCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL 882 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCch
Confidence 9999999984 44567778877 667899999999999999999999999999865 4899999999999999999
Q ss_pred CcccchhhHHHHHHHh
Q 003249 807 RVYPYRYRAAGLIVFL 822 (836)
Q Consensus 807 ~~~~y~~r~~~~~~~~ 822 (836)
+..++..-|.+....|
T Consensus 883 nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 883 NLVQWLGEALIPEAVG 898 (1238)
T ss_pred hhHHHHHHHHhHHHHH
Confidence 9999998888777766
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=6.2e-14 Score=159.94 Aligned_cols=264 Identities=12% Similarity=0.024 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccchh---hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcC
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY---SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~---a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~ 459 (836)
...+...|.+...+|++++|.++|+++.+..|.. ...-.++++...|+++.|...
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~---------------------- 175 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG---------------------- 175 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH----------------------
Confidence 4566677899999999999999999998865443 223347778888887666666
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHH-HHH---HHHHHhcCCHHHHHHH
Q 003249 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECL-ELR---FCFFLALEDYQAALCD 534 (836)
Q Consensus 460 ~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~-~~r---g~~~~~lg~~~~Ai~d 534 (836)
++++.+.+|+++.++...+.++.+.|++++|+..+.+.++.++. +..+ ..+ +.-+...+..+++++.
T Consensus 176 --------l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 176 --------VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred --------HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 55555555666666666666666666666666666666655332 1111 111 1111333444444555
Q ss_pred HHHHHhhCCC----chhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHH--H
Q 003249 535 VQAILTLSPD----YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY--F 608 (836)
Q Consensus 535 ~~~al~l~P~----~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~--~ 608 (836)
+.++.+..|+ ....+... .......++++.| +..+.++++..|++.... .
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~------a~~l~~~g~~~~A------------------~~~l~~~l~~~pd~~~~~~~~ 303 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIAL------AEHLIDCDDHDSA------------------QEIIFDGLKKLGDDRAISLPL 303 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHH------HHHHHHCCChHHH------------------HHHHHHHHhhCCCcccchhHH
Confidence 5555555552 22111110 1111122222222 445555555555555321 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcccchHHHHHHHHHhhcc
Q 003249 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDH--ERLVYEGWILYDTSHCEEGLRKAE--ESIQMKRSFEAFFLKAYALADS 684 (836)
Q Consensus 609 ~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~--eal~~~G~il~~~G~~eeAl~~~~--~Ai~l~p~~~a~~~~a~aL~~~ 684 (836)
-+.......++.+++++.++++++.+|+++ ..+..+||+++++|++++|.+.|+ ++++++|+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~------------- 370 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA------------- 370 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-------------
Confidence 233333445677889999999999999999 899999999999999999999999 577777765
Q ss_pred ccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 685 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 685 ~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
..+..+|.++..+|+.++|.++|++++.+
T Consensus 371 ----------------------------~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 371 ----------------------------NDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred ----------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23558899999999999999999999875
No 57
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=1.6e-15 Score=147.64 Aligned_cols=125 Identities=12% Similarity=0.055 Sum_probs=111.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003249 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (836)
Q Consensus 466 ~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~ 544 (836)
..|++|++++|++ +.++|.++..+|++++|+..|++++.++|+ ..++.++|.++..+|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3489999999985 667899999999999999999999999996 678888999999999999999999999998887
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003249 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (836)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl 624 (836)
+ +.+|+++|.++..+|++++|+
T Consensus 91 ~----------------------------------------------------------~~a~~~lg~~l~~~g~~~eAi 112 (144)
T PRK15359 91 H----------------------------------------------------------PEPVYQTGVCLKMMGEPGLAR 112 (144)
T ss_pred C----------------------------------------------------------cHHHHHHHHHHHHcCCHHHHH
Confidence 6 356778888999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 003249 625 RSLQLARQHAASDHERLVYEGWILYDT 651 (836)
Q Consensus 625 ~~~~~Al~l~P~~~eal~~~G~il~~~ 651 (836)
..|++|++++|++++++.++|.+...+
T Consensus 113 ~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 113 EAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999987653
No 58
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.64 E-value=4.2e-13 Score=163.39 Aligned_cols=382 Identities=9% Similarity=-0.044 Sum_probs=260.6
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCC-chHHHH----Hhhhc
Q 003249 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-LGWMYQ----ERSLY 458 (836)
Q Consensus 384 ~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~-~~~ay~----~r~~~ 458 (836)
..++.+...|.+.|++++|.+.|++..+. ...+|..+...+.+.|++++|+..+.+....... ....|. .-+..
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 45666677788888888888888765442 2346677777788888888888888887665431 111111 11122
Q ss_pred CChhhHHHHHHHHHhcC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 459 CEGDKRWEDLDKATALD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQA 537 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ld-P~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~ 537 (836)
+..+++.+.+..+++.. ..+...|..+...|.+.|++++|...|++.. .|+...|......|.+.|++++|++.|++
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33355555555554443 2356677778888888888888888888764 34556677777888888888888888887
Q ss_pred HHh--hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 003249 538 ILT--LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLL 614 (836)
Q Consensus 538 al~--l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~-P~~~~~~~~~gl~l 614 (836)
..+ +.|+...+..-+ ......+.++.| ...+.++++.. +.+...+..+...|
T Consensus 316 M~~~g~~pd~~t~~~ll-------~a~~~~g~~~~a------------------~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMI-------RIFSRLALLEHA------------------KQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred HHHcCCCCCHHHHHHHH-------HHHHhccchHHH------------------HHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 765 456543221111 111122223333 23344444443 45567777888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cccchHHHHHHHHHhhccccCCCChh
Q 003249 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSFEAFFLKAYALADSSQDSSCSS 692 (836)
Q Consensus 615 ~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~--l~p~~~a~~~~a~aL~~~~l~~~~~~ 692 (836)
.+.|++++|.+.|++..+ .|..+|+.+...|.+.|+.++|++.|++.++ +.|+...|.....++...| ..+
T Consensus 371 ~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g----~~~ 443 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG----LSE 443 (697)
T ss_pred HHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC----cHH
Confidence 899999999999988754 3567888888999999999999999998776 4577666655555554433 445
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc-hhHHhhHHHHHHhcCCHHHHHHHHHHHH
Q 003249 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-TRAHQGLARVHFLKNNKTTAYEEMTKLI 771 (836)
Q Consensus 693 ~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~-~~A~~~la~~~~~~g~~~~A~~~~~kai 771 (836)
.+...++...+...-.+ ....|+.+..+|.+.|++++|.+.+++.- +.| ...+..+..++...|+.+.|...+++.+
T Consensus 444 ~a~~~f~~m~~~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 444 QGWEIFQSMSENHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAP-FKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHHHhcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 55666666654221111 13578999999999999999999998763 344 3567788889999999999999999999
Q ss_pred HhcCCCHHHHHHHH----HccCHHHHHHHHHHhHh
Q 003249 772 KKARNNASAYEKRS----EYCDRELTRADLEMVTQ 802 (836)
Q Consensus 772 e~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~ 802 (836)
++.|++...|...+ ..|+.++|.+-+++..+
T Consensus 522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999998874 44899999999987643
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.63 E-value=6.9e-13 Score=152.11 Aligned_cols=386 Identities=14% Similarity=0.051 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhcc--CCchHHHHHhh--
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TPLGWMYQERS-- 456 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l--~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~--~~~~~ay~~r~-- 456 (836)
+..|-.+.......|++..+.+.|++++.. +....|+.++..+...|....|+.......... |+....+..-.
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmaskl 402 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKL 402 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHH
Confidence 445666788888899999999999999875 344567777777777777667777666555544 32222221111
Q ss_pred ---hcCChhhHHHHHHHHHhcC-----CCChHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHhcCCC-hHHHH
Q 003249 457 ---LYCEGDKRWEDLDKATALD-----PTLSYPYMYRASSLMTKQN-----------VEAALAEINRILGFKLA-LECLE 516 (836)
Q Consensus 457 ---~~~~~~eAi~d~~kAi~ld-----P~~~~ay~~rg~~l~~~g~-----------~~eAi~~~~kai~l~P~-~~~~~ 516 (836)
.++..++++..-.+|+.+- --.+..|...|++|..+-+ ..+++..+++|++++|+ +.+.+
T Consensus 403 c~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if 482 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIF 482 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Confidence 1122244444444444411 1112344445554433221 33455555555555553 34445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHH
Q 003249 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (836)
Q Consensus 517 ~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~a 596 (836)
+.+.-|..+++.+.|.+..+++++++|.+
T Consensus 483 ~lalq~A~~R~l~sAl~~~~eaL~l~~~~--------------------------------------------------- 511 (799)
T KOG4162|consen 483 YLALQYAEQRQLTSALDYAREALALNRGD--------------------------------------------------- 511 (799)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCc---------------------------------------------------
Confidence 55555555555555555555555554433
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc---cchHH
Q 003249 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK---RSFEA 673 (836)
Q Consensus 597 l~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~---p~~~a 673 (836)
++.+|..+++++...+++.+|+...+.++.-.|++..-...+-.+-...|+.++|+.-...-+.+= +.+..
T Consensus 512 ------~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~ 585 (799)
T KOG4162|consen 512 ------SAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQ 585 (799)
T ss_pred ------cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhh
Confidence 445666677777777777777777777777777777777666666667777777777666665431 11111
Q ss_pred HHHHHHHhh---ccccCCCChhHHHHHHHHHh--------------cCCccccc---------hHHHHHHHHHHHHhcCC
Q 003249 674 FFLKAYALA---DSSQDSSCSSTVVSLLEDAL--------------KCPSDRLR---------KGQALNNLGSVYVDCGQ 727 (836)
Q Consensus 674 ~~~~a~aL~---~~~l~~~~~~~~i~~l~~Al--------------~~~~~~~~---------~~~a~~nlG~~y~~~g~ 727 (836)
.-.++-.+. ..++-+++...+++....+. +.+.-... ....|.-.+.++...+.
T Consensus 586 ~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~ 665 (799)
T KOG4162|consen 586 TLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGN 665 (799)
T ss_pred hhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCC
Confidence 111111111 01111111111111111100 00000000 11345566677777777
Q ss_pred HHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHH--HHHH
Q 003249 728 LDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRA--DLEM 799 (836)
Q Consensus 728 ~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~--D~~~ 799 (836)
-++|.-|..+|-.+.|. ..++-.|+.+..+|+.++|.+.|.-|+.++|++..+....+ +.|+...|.. -+.-
T Consensus 666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 666 DDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 77777777777777654 44566677777777777777777777777777777766653 3466666666 6677
Q ss_pred hHhcCCCCcccchhhHHHHHHHhhhh
Q 003249 800 VTQLDPLRVYPYRYRAAGLIVFLNLH 825 (836)
Q Consensus 800 Ai~l~P~~~~~y~~r~~~~~~~~~~~ 825 (836)
|+++||+..+++.+=|.|+++.|..|
T Consensus 746 alr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 746 ALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHhhCCCCHHHHHHHHHHHHHccchH
Confidence 77777777777777777777777655
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=4e-14 Score=152.39 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhc----cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccC------------Cc
Q 003249 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNA----GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT------------PL 448 (836)
Q Consensus 385 a~~~lG~~~~~~g~y~eAi~~f~~Al~l----~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~------------~~ 448 (836)
.++|++..|.....+.||+..|+-.++- +...--.++|.+++++..+.+|++.|.-++..-| +.
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 4556666666666667777766655442 1112234566666776677777777665554433 22
Q ss_pred hHHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF 508 (836)
Q Consensus 449 ~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l 508 (836)
|..+...| .+++||..|+...+.+|++..+ +|+-.+++..|+-+.--+.|.|.|.+
T Consensus 283 gvtfiq~g---qy~dainsfdh~m~~~pn~~a~-~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 283 GVTFIQAG---QYDDAINSFDHCMEEAPNFIAA-LNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred CeeEEecc---cchhhHhhHHHHHHhCccHHhh-hhhhhhheecCcHHHHHHHHHHHhcC
Confidence 33333333 3378888888888888876544 56777788888888888888888864
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-12 Score=150.34 Aligned_cols=353 Identities=18% Similarity=0.136 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhcc--chh--hHhhHHH-HHHhcCCHHHHHHHHHHhHhccC-----------
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIY--SIAGLAR-LGYIKGHKLWAYEKLNSVISSVT----------- 446 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~--~~~--a~~~la~-~~~~~G~~~~A~~~~~~ai~~~~----------- 446 (836)
-..|+.++..+...|.-..|+...+..+.+. |.+ .+.-.+. +....|..++++.+-.++|....
T Consensus 357 ~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~ 436 (799)
T KOG4162|consen 357 HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGY 436 (799)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHH
Confidence 4678889999999999999999999887775 432 2222233 45777888889988888887431
Q ss_pred -CchHHHHHhhhc--------CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hHHH
Q 003249 447 -PLGWMYQERSLY--------CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECL 515 (836)
Q Consensus 447 -~~~~ay~~r~~~--------~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~--~~~~ 515 (836)
-.|.+|..+..- ....++++.+++|++++|+|+.+.++++.=|..+++.+.|+....++++++|. ..+|
T Consensus 437 l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~w 516 (799)
T KOG4162|consen 437 LFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAW 516 (799)
T ss_pred HHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHH
Confidence 123344333211 11268899999999999999999999999999999999999999999999884 5789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhHHH-------HHHHHHHHHHhhhHhHHHHHHhhhhcc------
Q 003249 516 ELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRVAA-------SQLHMLVREHIDNWTIADCWLQLYDRW------ 581 (836)
Q Consensus 516 ~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~-~~~~~~~-------~~~~~~l~~~~~~~~~a~~~~~~~~~~------ 581 (836)
+.++.++...+++.+|+.-.+.+++--|+|.. -.++... ...+........-|+.---..+.+++.
T Consensus 517 hLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk 596 (799)
T KOG4162|consen 517 HLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLK 596 (799)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhh
Confidence 99999999999999999999999999998632 1122211 112222333333343111111111110
Q ss_pred -------Ccccccc-------hHHHHHHHHhc-----------CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 003249 582 -------SSVDDIG-------SLSVIYQMLES-----------DAPKG-------VLYFRQSLLLLRLNCPEAAMRSLQL 629 (836)
Q Consensus 582 -------~~~~~~~-------aL~~~~~al~~-----------~P~~~-------~~~~~~gl~l~~l~~~~eAl~~~~~ 629 (836)
+...+.. ++.. .|.... -|++. ..|...+.+..+.+..++|.-++.+
T Consensus 597 ~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 597 AGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred cccccCcccccccchhhHHHHHHHH-hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 0011110 1111 111111 12222 4566778888899999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHH--HHHHHhcCCc
Q 003249 630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVS--LLEDALKCPS 706 (836)
Q Consensus 630 Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~--~l~~Al~~~~ 706 (836)
|-.+.|-.+..|+.+|..+..+|+++||.+.|..|+.++|+. +.....|-.+-..| +..-+.. ++.+|++..+
T Consensus 676 a~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G----~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 676 ASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG----SPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC----CcchHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999986 55555555555555 2222233 6777887766
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc
Q 003249 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (836)
Q Consensus 707 ~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~ 743 (836)
.. +++|+++|.++..+|+.++|.+||.-|+++.+
T Consensus 752 ~n---~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 752 LN---HEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CC---HHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 65 57888888888888888888888888888743
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=2.7e-13 Score=157.75 Aligned_cols=334 Identities=15% Similarity=0.074 Sum_probs=190.3
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 461 ~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
.++|...+..+|..+|.++.||+.+|.+|-++|+.+.|...+-.|--++|+ ++.|...+....++|.+++|+-+|.+||
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 366666666666666666666666666666666666666666666666664 4555555666666666666666666666
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHH-----HHHHH
Q 003249 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR-----QSLLL 614 (836)
Q Consensus 540 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~-----~gl~l 614 (836)
+++|.+..+..+.. .+++..++...| +..+.++++.+|....-++. .+..+
T Consensus 235 ~~~p~n~~~~~ers------~L~~~~G~~~~A------------------m~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 235 QANPSNWELIYERS------SLYQKTGDLKRA------------------METFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred hcCCcchHHHHHHH------HHHHHhChHHHH------------------HHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 66666544332211 222222322222 44455555555522222221 12233
Q ss_pred HHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cccchHHH--H--HHH--HHhhcc
Q 003249 615 LRLNCPEAAMRSLQLARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSFEAF--F--LKA--YALADS 684 (836)
Q Consensus 615 ~~l~~~~eAl~~~~~Al~--l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~--l~p~~~a~--~--~~a--~aL~~~ 684 (836)
...++.+.|+..+..++. -+-...+-++-+..++....+++.|+.....--. ..++...+ + .+. .++-..
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 344444555555555555 2223333444555555555555555544333322 11221100 0 000 000000
Q ss_pred ccCCCChhHH----HH-----------HHHH-HhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc---hh
Q 003249 685 SQDSSCSSTV----VS-----------LLED-ALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH---TR 745 (836)
Q Consensus 685 ~l~~~~~~~~----i~-----------~l~~-Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~---~~ 745 (836)
+.+......+ +. .+.. ..+...-....++.|.++..+|.+-|+|.+|+..|.......+ ..
T Consensus 371 ~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 371 GKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 0000000000 00 0111 1111100112468999999999999999999999999998743 45
Q ss_pred HHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCC----CcccchhhHHH
Q 003249 746 AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPL----RVYPYRYRAAG 817 (836)
Q Consensus 746 A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~----~~~~y~~r~~~ 817 (836)
.+..+|++|..+|.+++|+..|+|++..+|.+-++-...+ +.|++|+|.+-+++-+ ||+ ...++-.+..+
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~--~~D~~~~e~~a~~~e~ri 528 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII--NPDGRNAEACAWEPERRI 528 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc--CCCccchhhccccHHHHH
Confidence 7899999999999999999999999999999999998885 4599999999999877 555 44455555555
Q ss_pred HHH
Q 003249 818 LIV 820 (836)
Q Consensus 818 ~~~ 820 (836)
++.
T Consensus 529 ~~~ 531 (895)
T KOG2076|consen 529 LAH 531 (895)
T ss_pred HHH
Confidence 543
No 63
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.62 E-value=2e-15 Score=164.56 Aligned_cols=147 Identities=22% Similarity=0.373 Sum_probs=131.6
Q ss_pred cccCCCCccccEEEEeCC-----eEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcC
Q 003249 173 VSMSGDQVLRNVVFRIHE-----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSL 247 (836)
Q Consensus 173 ~~~~~~~~~~DV~~~v~~-----~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l 247 (836)
..+.+++..+||.|+|++ +.|||||.|||..|.+|.+||+|++.|+...+|.++| +.|.+|..+|.|+|++.+
T Consensus 106 ~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpd--vepaaFl~~L~flYsdev 183 (521)
T KOG2075|consen 106 AALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPD--VEPAAFLAFLRFLYSDEV 183 (521)
T ss_pred HhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCC--cChhHhHHHHHHHhcchh
Confidence 455788999999999974 5899999999999999999999999999889999995 999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhcccCCChH
Q 003249 248 NGVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDE 322 (836)
Q Consensus 248 ~~~~~~~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~~l~~~ 322 (836)
. +..++|+.+|.+|++|-+..|++.|-..+...+....+.+++...|....-+.|...|++++..++...+..+
T Consensus 184 ~-~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~E 257 (521)
T KOG2075|consen 184 K-LAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPE 257 (521)
T ss_pred h-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCcc
Confidence 9 9999999999999999999999999998888877776666666668999999999999999987766555433
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.62 E-value=7e-14 Score=140.90 Aligned_cols=198 Identities=20% Similarity=0.229 Sum_probs=160.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHH
Q 003249 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (836)
Q Consensus 514 ~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~ 593 (836)
+...+|.-|.+.||+..|...+++||+.||++.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~----------------------------------------------- 69 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY----------------------------------------------- 69 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----------------------------------------------
Confidence 345578889999999999999999999988874
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHH
Q 003249 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (836)
Q Consensus 594 ~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a 673 (836)
.+|..++.+|.++|..+.|-+.|++|+.++|++.++++|.|+-|..+|++++|...|++|+.. |.+
T Consensus 70 -----------~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y-- 135 (250)
T COG3063 70 -----------LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAY-- 135 (250)
T ss_pred -----------HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCC--
Confidence 345566778889999999999999999999999999999999999999999999999999952 332
Q ss_pred HHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHH
Q 003249 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLA 751 (836)
Q Consensus 674 ~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la 751 (836)
....++|.|+|.+-.+.|+++.|.+.|+++|+++|. .+...++
T Consensus 136 -----------------------------------~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 136 -----------------------------------GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred -----------------------------------CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHH
Confidence 112468999999999999999999999999999875 5778889
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCHHHHH-H-H--HHccCHHHHHHHHHHhHhcCCCC
Q 003249 752 RVHFLKNNKTTAYEEMTKLIKKARNNASAYE-K-R--SEYCDRELTRADLEMVTQLDPLR 807 (836)
Q Consensus 752 ~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~-~-r--~~~~~~~~A~~D~~~Ai~l~P~~ 807 (836)
+.+.+.|++-.|--.+.+.-.--+-.|+... . | ..+||++.|-..=.+--++-|..
T Consensus 181 ~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 181 RLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 9999999999998777766644444444422 1 2 34688877766655666666653
No 65
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.61 E-value=4.1e-13 Score=156.45 Aligned_cols=166 Identities=14% Similarity=-0.009 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhccCC--chHHHHHhhh
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTP--LGWMYQERSL 457 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~--~~~ay~~r~~ 457 (836)
-|.+|..+|..|..--+-..|-.||++|.++++.+ ++.+.+..|......+.|......+-+..|. .-|.|..||.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 45688889999988888999999999999998776 5566777899999999888775444444431 2334444776
Q ss_pred cC----ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHH
Q 003249 458 YC----EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAAL 532 (836)
Q Consensus 458 ~~----~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai 532 (836)
|. ....|+.+|+.|+..+|++.+.|..+|.+|.+.|++.-|+..|+||..++|.. ..-+..+.....+|+|++|+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 53 33789999999999999999999999999999999999999999999999975 44566788899999999999
Q ss_pred HHHHHHHhhCCCchh
Q 003249 533 CDVQAILTLSPDYRM 547 (836)
Q Consensus 533 ~d~~~al~l~P~~~~ 547 (836)
..++..+.-...+..
T Consensus 651 d~l~~ii~~~s~e~~ 665 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERT 665 (1238)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987776644
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=1.4e-14 Score=151.08 Aligned_cols=230 Identities=13% Similarity=0.024 Sum_probs=205.7
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----CCh
Q 003249 387 HQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEG 461 (836)
Q Consensus 387 ~~lG~~~~~~g~y~eAi~~f~~Al~l-~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~~~ 461 (836)
.++|.+|+..|.+.+|.+.++.+++. .+.+.+..++++|.+..++..|+..+...+...|....+.....+. +..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 36899999999999999999999986 5678888999999999999999999999999999766555444432 444
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|++.|..+++++|.|.++.-..|.-|+-.++.+-|+..|++++++.-. ++.+.|.|.+..--++++-++.+|++|+.
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999885 78888999999999999999999999998
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~ 620 (836)
.--+.. ..+..|||+|.+....|++
T Consensus 387 tat~~~-------------------------------------------------------~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 387 TATQPG-------------------------------------------------------QAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred hccCcc-------------------------------------------------------hhhhhhhccceeEEeccch
Confidence 754321 1256799999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.-|-++|+.++..+|++.++++|+|.+-.+.|+.++|.+.++.|-...|+-
T Consensus 412 nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 999999999999999999999999999999999999999999999988875
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.61 E-value=7.4e-13 Score=147.60 Aligned_cols=304 Identities=13% Similarity=-0.030 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccchh-----hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhh
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY-----SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS 456 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~-----a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~ 456 (836)
-+.+|..+|..+...|+.++|...|.++.+..+.. ...-.|.+....|++++|...
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~------------------- 65 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALAL------------------- 65 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHH-------------------
Confidence 46788899999999999999888888887664322 233344555666665555555
Q ss_pred hcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCh-HHHHHHHHHHHhcCCHHHH
Q 003249 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL----GFKLAL-ECLELRFCFFLALEDYQAA 531 (836)
Q Consensus 457 ~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai----~l~P~~-~~~~~rg~~~~~lg~~~~A 531 (836)
++++++.+|++..++.. +..+...|.+.++.....+++ ..+|+. ..+..+|.++..+|++++|
T Consensus 66 -----------~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 133 (355)
T cd05804 66 -----------LEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRA 133 (355)
T ss_pred -----------HHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555544 444443333333333333333 222321 2333455566666666666
Q ss_pred HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHH
Q 003249 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (836)
Q Consensus 532 i~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~g 611 (836)
+..++++++++|++. .++..+|
T Consensus 134 ~~~~~~al~~~p~~~----------------------------------------------------------~~~~~la 155 (355)
T cd05804 134 EEAARRALELNPDDA----------------------------------------------------------WAVHAVA 155 (355)
T ss_pred HHHHHHHHhhCCCCc----------------------------------------------------------HHHHHHH
Confidence 666666666555542 2233445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--hHHHH-HHHHHhhcc
Q 003249 612 LLLLRLNCPEAAMRSLQLARQHAASDHE----RLVYEGWILYDTSHCEEGLRKAEESIQMKRS--FEAFF-LKAYALADS 684 (836)
Q Consensus 612 l~l~~l~~~~eAl~~~~~Al~l~P~~~e----al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~--~~a~~-~~a~aL~~~ 684 (836)
.++...|++++|++.++++++..|.++. .+..+|.++..+|++++|+..|++++...|. ...-. ..+..+...
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 5556666666666666666666553322 2445666666666666666666666655541 11111 111111110
Q ss_pred ccCC--CChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC-c----------hhHHhhHH
Q 003249 685 SQDS--SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR-H----------TRAHQGLA 751 (836)
Q Consensus 685 ~l~~--~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~-~----------~~A~~~la 751 (836)
.+.- ......-.+........+. .-....-.+.+.++...|+.++|....+.....- . .....-.|
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A 314 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEA 314 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHH
Confidence 0000 0000000001111111011 0011222368888999999999999988876531 1 24567788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcC
Q 003249 752 RVHFLKNNKTTAYEEMTKLIKKAR 775 (836)
Q Consensus 752 ~~~~~~g~~~~A~~~~~kaie~~p 775 (836)
.++...|++++|++.+..++++..
T Consensus 315 ~~~~~~g~~~~A~~~L~~al~~a~ 338 (355)
T cd05804 315 LYAFAEGNYATALELLGPVRDDLA 338 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999997763
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.61 E-value=1.6e-13 Score=156.89 Aligned_cols=241 Identities=16% Similarity=0.093 Sum_probs=193.9
Q ss_pred CchHHHHHhhhcCChhhHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC-h
Q 003249 447 PLGWMYQERSLYCEGDKRWEDLDKATAL--------DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK-----LA-L 512 (836)
Q Consensus 447 ~~~~ay~~r~~~~~~~eAi~d~~kAi~l--------dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~-----P~-~ 512 (836)
.++.+|..+|.| ++|+.-+.+|+++ .|..+......|.+|..++++++|+..|++|+.+- ++ +
T Consensus 204 ~La~~y~~~g~~---e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 204 NLAEMYAVQGRL---EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHhccH---HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 367777777777 8999999999998 78888888889999999999999999999999852 33 2
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccch
Q 003249 513 ---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (836)
Q Consensus 513 ---~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~a 589 (836)
..+.++|.+|.+.|++++|..++++|++|--.-
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-------------------------------------------- 316 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-------------------------------------------- 316 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--------------------------------------------
Confidence 347788999999999999999999999883220
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003249 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKA 661 (836)
Q Consensus 590 L~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l--------~P~~~eal~~~G~il~~~G~~eeAl~~~ 661 (836)
.....|.-+..+.+.+.++...|++++|...+++++++ +|.-+..+.++|++|+.+|+|+||.+.|
T Consensus 317 ------~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~ 390 (508)
T KOG1840|consen 317 ------LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY 390 (508)
T ss_pred ------hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 00111233455677788888899999999999999875 3455788999999999999999999999
Q ss_pred HHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 662 EESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 662 ~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
++||.+..... +. .....+..++++|..|.+.+++++|...|.+++.|
T Consensus 391 k~ai~~~~~~~--------------~~------------------~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 391 KKAIQILRELL--------------GK------------------KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred HHHHHHHHhcc--------------cC------------------cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 99998764431 00 01112468999999999999999999999999887
Q ss_pred C----c-----hhHHhhHHHHHHhcCCHHHHHHHHHHHHH
Q 003249 742 R----H-----TRAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (836)
Q Consensus 742 ~----~-----~~A~~~la~~~~~~g~~~~A~~~~~kaie 772 (836)
. | ...+.|||.+|..+|++++|++--.+++.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 1 36899999999999999999988888773
No 69
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=9.5e-13 Score=141.97 Aligned_cols=271 Identities=13% Similarity=0.050 Sum_probs=192.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHH
Q 003249 484 YRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFFLA--LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (836)
Q Consensus 484 ~rg~~l~~~g~~~eAi~~~~kai~l~P~--~~~~~~rg~~~~~--lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~ 559 (836)
+.+..|++.|+++.||+.+.-.-+-+.. ..+..|+..+++- -.++.+|-.+-+.|+.++.-++.+..+.+
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkg------ 497 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKG------ 497 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCC------
Confidence 5566677777777777654332222222 2334455444443 34666666666677666654433222111
Q ss_pred HHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 003249 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (836)
Q Consensus 560 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e 639 (836)
.+--..+.++ .++..|..+|..|....++.|+.|+.+..+|+.++|+++|-+.-.+--++++
T Consensus 498 n~~f~ngd~d------------------ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e 559 (840)
T KOG2003|consen 498 NIAFANGDLD------------------KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE 559 (840)
T ss_pred ceeeecCcHH------------------HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH
Confidence 1111112222 2477899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHH
Q 003249 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 719 (836)
Q Consensus 640 al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG 719 (836)
.++.++.||--+.+..+||+.+-++..+=|+.++...+...|.+.- +....+.+.+-+.-+..|-+ .+...-||
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe---gdksqafq~~ydsyryfp~n---ie~iewl~ 633 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE---GDKSQAFQCHYDSYRYFPCN---IETIEWLA 633 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc---cchhhhhhhhhhcccccCcc---hHHHHHHH
Confidence 9999999999999999999999999999999988777655444322 22222222222222222222 35667789
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCchhHH--hhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003249 720 SVYVDCGQLDLAADCYSNALKIRHTRAH--QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 784 (836)
Q Consensus 720 ~~y~~~g~~deAi~~y~kAL~l~~~~A~--~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r 784 (836)
.-|.+..-+++||..|++|--+.|+... .-+|.++.+.|+|+.|++.|...-.+-|.+....-.+
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 9999999999999999999888877544 4467788999999999999999999999999986443
No 70
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.60 E-value=9.1e-15 Score=142.32 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=84.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcC
Q 003249 625 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (836)
Q Consensus 625 ~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~ 704 (836)
+.++++++++|++ ++.+|.++..+|++++|+..|++++.++|.+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~--------------------------------- 57 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS--------------------------------- 57 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------------------------
Confidence 4566666776664 4556777777777777777777777666654
Q ss_pred CccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 003249 705 PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE 782 (836)
Q Consensus 705 ~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~ 782 (836)
..+|+++|.++..+|++++|+.+|++|++++|. .+++++|.++...|++++|+..|.++|+++|+++.+|.
T Consensus 58 -------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 58 -------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred -------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 356677777777777777777777777776553 56777777777777777777777777777777777777
Q ss_pred HHHHc
Q 003249 783 KRSEY 787 (836)
Q Consensus 783 ~r~~~ 787 (836)
+|+..
T Consensus 131 ~~~~~ 135 (144)
T PRK15359 131 IRQNA 135 (144)
T ss_pred HHHHH
Confidence 77654
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.4e-12 Score=137.17 Aligned_cols=190 Identities=15% Similarity=0.083 Sum_probs=156.5
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 588 ~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
.+|....++|..+|++..++.-+|.++...+|+++|+=.|+.|+.+.|.+-+.|-.+-..|...|++.||....+.++..
T Consensus 318 rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~ 397 (564)
T KOG1174|consen 318 RALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL 397 (564)
T ss_pred HHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 36788889999999999999999999999999999999999999999999888877777888999999999999999987
Q ss_pred ccchHHHHHHHHHhhc---cccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 668 KRSFEAFFLKAYALAD---SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 668 ~p~~~a~~~~a~aL~~---~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
-|.+. ++..|-. --.+|.--+.+...++++++..|..+ -|-+.++.....-|++.++|...+++|.+-++
T Consensus 398 ~~~sA----~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~---~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D 470 (564)
T KOG1174|consen 398 FQNSA----RSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT---PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD 470 (564)
T ss_pred hhcch----hhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH---HHHHHHHHHHHhhCccchHHHHHHHHHhhccc
Confidence 66652 1111111 01356666778888999999888775 56777888888999999999999999988554
Q ss_pred -hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003249 745 -RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 784 (836)
Q Consensus 745 -~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r 784 (836)
..|.-+|.+....+.+++|++.|.+|+.++|++-.+....
T Consensus 471 ~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 471 VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 6889999999999999999999999999999987766544
No 72
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.59 E-value=1e-13 Score=145.67 Aligned_cols=174 Identities=13% Similarity=0.103 Sum_probs=133.8
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 003249 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L---ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (836)
Q Consensus 473 ~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~---~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~ 548 (836)
..++..+..++.+|..+...|++++|+..|++++..+|+ + .+++.+|.++..+|++++|+..|+++++..|++...
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 567788899999999999999999999999999999996 3 567889999999999999999999999999987541
Q ss_pred hhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH--------cCCH
Q 003249 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR--------LNCP 620 (836)
Q Consensus 549 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~--------l~~~ 620 (836)
..+++.+|.++.. .|++
T Consensus 107 -------------------------------------------------------~~a~~~~g~~~~~~~~~~~~~~~~~ 131 (235)
T TIGR03302 107 -------------------------------------------------------DYAYYLRGLSNYNQIDRVDRDQTAA 131 (235)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHhcccccCCHHHH
Confidence 1112222222222 2445
Q ss_pred HHHHHHHHHHHHcCCCCHHH-----------------HHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhc
Q 003249 621 EAAMRSLQLARQHAASDHER-----------------LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~~~ea-----------------l~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~ 683 (836)
++|++.|+++++.+|++..+ ...+|.+++.+|++++|+..|++++...|+.
T Consensus 132 ~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------------ 199 (235)
T TIGR03302 132 REAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT------------ 199 (235)
T ss_pred HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC------------
Confidence 55555555555555555433 3467888999999999999999999776543
Q ss_pred cccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 684 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 738 (836)
Q Consensus 684 ~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kA 738 (836)
+..+.+++++|.+|..+|++++|+.++++.
T Consensus 200 -------------------------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 200 -------------------------PATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred -------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122578999999999999999999976654
No 73
>PLN03077 Protein ECB2; Provisional
Probab=99.59 E-value=6.6e-12 Score=156.51 Aligned_cols=396 Identities=10% Similarity=-0.026 Sum_probs=198.4
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhcc--ch-hhHhhHHHHHHhcCCHHHHHHHHHHhHhccC-CchHHHHHh----h
Q 003249 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAG--HI-YSIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQER----S 456 (836)
Q Consensus 385 a~~~lG~~~~~~g~y~eAi~~f~~Al~l~--~~-~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~-~~~~ay~~r----~ 456 (836)
.|+.+-..|.+.|++++|++.|++..+.+ |. ..+..+-..+...|+.+.|.+.+..++...- .....|... +
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 34444444555555555555555544431 11 2233333344455555555555544443321 111111111 1
Q ss_pred hcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhcCCHHHHHHH
Q 003249 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQAALCD 534 (836)
Q Consensus 457 ~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~--l~P~~~~~~~rg~~~~~lg~~~~Ai~d 534 (836)
..+..++|...|++.. ..+...|..+...|.+.|++++|+..|++..+ +.|+...+...-.++...|++++|.+.
T Consensus 335 k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 335 SLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred hcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 1123355555555432 22344555555555555555555555555433 234433343333345555555555555
Q ss_pred HHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003249 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 614 (836)
Q Consensus 535 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l 614 (836)
++.+++........ ..+.+-..+...+.++.| ...++++.+ .+...|......+
T Consensus 412 ~~~~~~~g~~~~~~-----~~n~Li~~y~k~g~~~~A------------------~~vf~~m~~---~d~vs~~~mi~~~ 465 (857)
T PLN03077 412 HELAERKGLISYVV-----VANALIEMYSKCKCIDKA------------------LEVFHNIPE---KDVISWTSIIAGL 465 (857)
T ss_pred HHHHHHhCCCcchH-----HHHHHHHHHHHcCCHHHH------------------HHHHHhCCC---CCeeeHHHHHHHH
Confidence 55555543221100 001111122223333333 333443322 2344555566666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHH-----------------------------------HHHHHHHhcCCHHHHHH
Q 003249 615 LRLNCPEAAMRSLQLARQHAASDHERLV-----------------------------------YEGWILYDTSHCEEGLR 659 (836)
Q Consensus 615 ~~l~~~~eAl~~~~~Al~l~P~~~eal~-----------------------------------~~G~il~~~G~~eeAl~ 659 (836)
.+.|++++|+..|++.++.-+.|...+. .+-..|.+.|+.++|..
T Consensus 466 ~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~ 545 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545 (857)
T ss_pred HHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHH
Confidence 6666666666666666543222222221 12245556666666666
Q ss_pred HHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcC--CccccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 660 KAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC--PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSN 737 (836)
Q Consensus 660 ~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~--~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~k 737 (836)
.|++. .|+...|......++..| ..+.+++++++..+. .|+ ..+++.+-.++...|++++|...|++
T Consensus 546 ~f~~~---~~d~~s~n~lI~~~~~~G----~~~~A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 546 QFNSH---EKDVVSWNILLTGYVAHG----KGSMAVELFNRMVESGVNPD----EVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHHhc---CCChhhHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCC----cccHHHHHHHHhhcChHHHHHHHHHH
Confidence 66664 444444444433333322 445566666655532 222 24566666677777777777777777
Q ss_pred HHc---CCch-hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH----HHccCHHHHHHHHHHhHhcCCCCcc
Q 003249 738 ALK---IRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLRVY 809 (836)
Q Consensus 738 AL~---l~~~-~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r----~~~~~~~~A~~D~~~Ai~l~P~~~~ 809 (836)
..+ +.|. ..+..+..++.+.|++++|.+.+++. .+.|+ +..|... ...|+.+.|....++.++++|+.+.
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~ 692 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG 692 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc
Confidence 662 3444 34566777777777777777666542 34454 4444443 2245667777777777888888777
Q ss_pred cchhhHHHHHHHh
Q 003249 810 PYRYRAAGLIVFL 822 (836)
Q Consensus 810 ~y~~r~~~~~~~~ 822 (836)
.|..=+.+|...|
T Consensus 693 ~y~ll~n~ya~~g 705 (857)
T PLN03077 693 YYILLCNLYADAG 705 (857)
T ss_pred hHHHHHHHHHHCC
Confidence 7766555554443
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.59 E-value=7.6e-13 Score=147.48 Aligned_cols=213 Identities=15% Similarity=0.026 Sum_probs=169.6
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 003249 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (836)
Q Consensus 474 ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~----~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~ 549 (836)
.||+++.+|..+|..+...|+.++|...+.++.+..|. .+..+.+|.++...|++++|+..++++++.+|++...+
T Consensus 1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~ 80 (355)
T cd05804 1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL 80 (355)
T ss_pred CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 38999999999999999999999999999999998883 24567789999999999999999999999999986433
Q ss_pred hhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003249 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQL 629 (836)
Q Consensus 550 ~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~ 629 (836)
.. +.... ..++..+..+. ....+......+|.....+...|.++...|++++|++.+++
T Consensus 81 ~~-~~~~~------------------~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 139 (355)
T cd05804 81 KL-HLGAF------------------GLGDFSGMRDH--VARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARR 139 (355)
T ss_pred HH-hHHHH------------------HhcccccCchh--HHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 10000 00000011111 12222234467788889999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCcccc
Q 003249 630 ARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL 709 (836)
Q Consensus 630 Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~ 709 (836)
+++++|+++.++..+|.+++.+|++++|+..+++++.+.|....
T Consensus 140 al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~------------------------------------ 183 (355)
T cd05804 140 ALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM------------------------------------ 183 (355)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc------------------------------------
Confidence 99999999999999999999999999999999999987653200
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc
Q 003249 710 RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (836)
Q Consensus 710 ~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~ 743 (836)
.....|.++|.++..+|++++|+..|++++...+
T Consensus 184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 184 LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 0023577899999999999999999999987765
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.59 E-value=1.3e-13 Score=138.96 Aligned_cols=148 Identities=17% Similarity=0.099 Sum_probs=134.5
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003249 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLS 542 (836)
Q Consensus 464 Ai~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~ 542 (836)
|...+++|++.||++..+|.-|+.+|..+|..+.|-+.|++|+.++|+. +.++|-|+++..+|++++|...|++|+. +
T Consensus 54 A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~ 132 (250)
T COG3063 54 AKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-D 132 (250)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-C
Confidence 3334899999999999999999999999999999999999999999975 8899999999999999999999999996 6
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 003249 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA 622 (836)
Q Consensus 543 P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~e 622 (836)
|.| |..+..|-|.|++-++.|+.+.
T Consensus 133 P~Y-------------------------------------------------------~~~s~t~eN~G~Cal~~gq~~~ 157 (250)
T COG3063 133 PAY-------------------------------------------------------GEPSDTLENLGLCALKAGQFDQ 157 (250)
T ss_pred CCC-------------------------------------------------------CCcchhhhhhHHHHhhcCCchh
Confidence 877 3335677899999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 623 Al~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
|...|+++++++|+.+.+...+...+++.|+|-.|-..+++--.-
T Consensus 158 A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 158 AEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998877776543
No 76
>PLN03077 Protein ECB2; Provisional
Probab=99.58 E-value=7.8e-12 Score=155.87 Aligned_cols=386 Identities=11% Similarity=-0.034 Sum_probs=281.1
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhcc--CCc---hHHHHHhhh
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSV--TPL---GWMYQERSL 457 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~--~~~---~~ay~~r~~ 457 (836)
...|+.+-..|...|++++|.+.|++... .....|..+...|.+.|++++|+..+.+..... |+. ..+....+.
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 45778888899999999999999987543 334578888889999999999999999876543 432 222233334
Q ss_pred cCChhhHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 458 YCEGDKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 458 ~~~~~eAi~d~~kAi~ldP-~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
.+..++|.+.++.+++... .+...|..+...|.+.|++++|...|++..+ |+...|......|...|++++|+..|+
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 4566899999999998765 3567888899999999999999999998753 555667778888899999999999999
Q ss_pred HHHh-hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 003249 537 AILT-LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLL 614 (836)
Q Consensus 537 ~al~-l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~-P~~~~~~~~~gl~l 614 (836)
+.+. +.||...+..-+.+....+. .+.+. .....++... ..+...+..+-..|
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~-------l~~~~------------------~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGA-------LMCGK------------------EIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhch-------HHHhH------------------HHHHHHHHhCCCccceechHHHHHH
Confidence 9874 45666543332222211111 11111 1111111111 12234445566788
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cccchHHHHHHHHHhhccccCCCChh
Q 003249 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ--MKRSFEAFFLKAYALADSSQDSSCSS 692 (836)
Q Consensus 615 ~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~--l~p~~~a~~~~a~aL~~~~l~~~~~~ 692 (836)
.+.|+.++|...|+.. +.|..+|+.+...|...|+.++|++.|++.++ +.|+...|.....+....| ..+
T Consensus 535 ~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g----~v~ 606 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG----MVT 606 (857)
T ss_pred HHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC----hHH
Confidence 8999999999999886 66888999999999999999999999998876 4577665555444444433 345
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-hHHhhHHHHHHhcCCHHHHHHHHHHHH
Q 003249 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLI 771 (836)
Q Consensus 693 ~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-~A~~~la~~~~~~g~~~~A~~~~~kai 771 (836)
.+...++...+...-.++ ...|+.+..+|.+.|++++|.+.+++. .++|+ ..+..+-.++...|+.+.|....++++
T Consensus 607 ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 566667766533222221 478999999999999999999999875 45554 345556667788899999998999999
Q ss_pred HhcCCCHHHHHHHH----HccCHHHHHHHHHHh----HhcCCC
Q 003249 772 KKARNNASAYEKRS----EYCDRELTRADLEMV----TQLDPL 806 (836)
Q Consensus 772 e~~p~~a~Ay~~r~----~~~~~~~A~~D~~~A----i~l~P~ 806 (836)
+++|+++..|.-.+ ..|++++|..-.+.- ++.+|.
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 99999999998875 458999988877754 444553
No 77
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.58 E-value=3e-15 Score=138.34 Aligned_cols=100 Identities=26% Similarity=0.464 Sum_probs=89.6
Q ss_pred CCCccccEEEEeC-CeEEehhHHHHhhcCHHHHHhhcCC-CCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCC-HH
Q 003249 177 GDQVLRNVVFRIH-EEKIECDRQKFAALSAPFSAMLNGS-FMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT-PN 253 (836)
Q Consensus 177 ~~~~~~DV~~~v~-~~~~~aHr~vLaa~S~yF~amf~~~-~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~-~~ 253 (836)
+++.+|||+|.++ +++|+|||.||+++|+||+.||.++ +.++...+|.++ ++++++|..+++|+|+|++. ++ .+
T Consensus 6 ~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~l~~~Y~~~~~-~~~~~ 82 (111)
T PF00651_consen 6 NSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP--DVSPEAFEAFLEYMYTGEIE-INSDE 82 (111)
T ss_dssp HHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET--TSCHHHHHHHHHHHHHSEEE-EE-TT
T ss_pred cCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc--cccccccccccccccCCccc-CCHHH
Confidence 3568999999999 8999999999999999999999998 777777788889 59999999999999999999 87 99
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003249 254 LLLEILIFANKFCCERLKDACDRKLA 279 (836)
Q Consensus 254 ~v~~lL~aA~~~c~~~L~~~c~~~l~ 279 (836)
++.+++.+|++|.++.|++.|...+.
T Consensus 83 ~~~~ll~lA~~~~~~~L~~~~~~~l~ 108 (111)
T PF00651_consen 83 NVEELLELADKLQIPELKKACEKFLQ 108 (111)
T ss_dssp THHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 99999999999999999999988764
No 78
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.58 E-value=8.6e-11 Score=146.66 Aligned_cols=381 Identities=11% Similarity=-0.033 Sum_probs=272.8
Q ss_pred HHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccC-CchHHHHHh----hhcCChhh
Q 003249 389 LGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT-PLGWMYQER----SLYCEGDK 463 (836)
Q Consensus 389 lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~-~~~~ay~~r----~~~~~~~e 463 (836)
+-..+...|..++|...|+.-.. .....|..+-..+...|+.+.|...+..+..... .....|... ...+..++
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~ 490 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHH
Confidence 44456778889999888865544 3345666677778889999999999988877653 222333222 23355589
Q ss_pred HHHHHHHHHhcCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 464 RWEDLDKATALDPT-LSYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 464 Ai~d~~kAi~ldP~-~~~ay~~rg~~l~~~g~~~eAi~~~~kai~--l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
|...|++..+.... +...|..+...|.+.|++++|+..|++..+ +.|+...|......|.+.|++++|.+-|++...
T Consensus 491 A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998876543 678999999999999999999999999865 467777787788889999999999999998875
Q ss_pred ----hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q 003249 541 ----LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLL 615 (836)
Q Consensus 541 ----l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~-P~~~~~~~~~gl~l~ 615 (836)
+.|+...+.. + ...+...++++.| +..+.++.+.+ +.+...|......+.
T Consensus 571 ~~~gi~PD~vTyna------L-I~ay~k~G~ldeA------------------~elf~~M~e~gi~p~~~tynsLI~ay~ 625 (1060)
T PLN03218 571 ETHPIDPDHITVGA------L-MKACANAGQVDRA------------------KEVYQMIHEYNIKGTPEVYTIAVNSCS 625 (1060)
T ss_pred hcCCCCCcHHHHHH------H-HHHHHHCCCHHHH------------------HHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 5677532211 1 1122233444444 56677777776 456788888888999
Q ss_pred HcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--cchHHHHHHHHHhhccccCCCCh
Q 003249 616 RLNCPEAAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK--RSFEAFFLKAYALADSSQDSSCS 691 (836)
Q Consensus 616 ~l~~~~eAl~~~~~Al~l--~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~--p~~~a~~~~a~aL~~~~l~~~~~ 691 (836)
+.|++++|+..|+...+. .|+ ...|..+...+.+.|++++|++.+++.++.. |+...|......+... +..
T Consensus 626 k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~----G~~ 700 (1060)
T PLN03218 626 QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA----KNW 700 (1060)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----CCH
Confidence 999999999999998875 564 6688889999999999999999999998754 5655555555555443 345
Q ss_pred hHHHHHHHHHhc--CCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC--Cch-hHHhhHHHHHHhcCCHHHHHHH
Q 003249 692 STVVSLLEDALK--CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT-RAHQGLARVHFLKNNKTTAYEE 766 (836)
Q Consensus 692 ~~~i~~l~~Al~--~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l--~~~-~A~~~la~~~~~~g~~~~A~~~ 766 (836)
+.+.+++++..+ ..++ ...|+.+-..|.+.|++++|++.|++..+. .|+ ..+..+-..+.+.|++++|..-
T Consensus 701 eeA~~lf~eM~~~g~~Pd----vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 701 KKALELYEDIKSIKLRPT----VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 566777776543 2222 478999999999999999999999987653 454 4677777889999999999999
Q ss_pred HHHHHHh--cCCCHHHHHHHHHc--cCHHHHHHHHHHhHhcCC
Q 003249 767 MTKLIKK--ARNNASAYEKRSEY--CDRELTRADLEMVTQLDP 805 (836)
Q Consensus 767 ~~kaie~--~p~~a~Ay~~r~~~--~~~~~A~~D~~~Ai~l~P 805 (836)
+.+.++. .|+ ...|.-.-.+ +++++|.......+..|+
T Consensus 777 ~~~M~k~Gi~pd-~~tynsLIglc~~~y~ka~~l~~~v~~f~~ 818 (1060)
T PLN03218 777 LSQAKEDGIKPN-LVMCRCITGLCLRRFEKACALGEPVVSFDS 818 (1060)
T ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence 9999864 344 4445444222 234555554444444444
No 79
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.57 E-value=8.1e-12 Score=152.21 Aligned_cols=396 Identities=9% Similarity=-0.026 Sum_probs=240.4
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHhcc---chhhHhhHHHHHHhcCCHHHHHHHHHHhHhccC----CchHHHHHhhhc
Q 003249 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAG---HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVT----PLGWMYQERSLY 458 (836)
Q Consensus 386 ~~~lG~~~~~~g~y~eAi~~f~~Al~l~---~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~----~~~~ay~~r~~~ 458 (836)
|..+-.++...++++.|...+...++.+ ....+..+...|.+.|+.++|.+.|++....+. .+..+|.. .
T Consensus 126 ~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~---~ 202 (697)
T PLN03081 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVD---A 202 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHH---C
Confidence 3334444444445555544444444321 122333444445555555555555544322110 01111111 1
Q ss_pred CChhhHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHhcCCHHHHHHHH
Q 003249 459 CEGDKRWEDLDKATALDPT-LSYPYMYRASSLMTKQNVEAALAEINRILGFK--LALECLELRFCFFLALEDYQAALCDV 535 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~-~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~--P~~~~~~~rg~~~~~lg~~~~Ai~d~ 535 (836)
+..++|+..|++..+..+. +...|..+-.++...|..+++...+..+++.. |+...+..+...|.+.|++++|.+.|
T Consensus 203 g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 282 (697)
T PLN03081 203 GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282 (697)
T ss_pred cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHH
Confidence 2224555555544433221 12333444444444455555544444444432 22333444556677777777777777
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 003249 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLL 614 (836)
Q Consensus 536 ~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~-P~~~~~~~~~gl~l 614 (836)
++... | +...|+.+ ...+...+.++. ++..+.++.+.. .-+...|.....++
T Consensus 283 ~~m~~--~-~~vt~n~l------i~~y~~~g~~~e------------------A~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 283 DGMPE--K-TTVAWNSM------LAGYALHGYSEE------------------ALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred HhCCC--C-ChhHHHHH------HHHHHhCCCHHH------------------HHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 65432 2 22222111 111122222322 366677776543 22456788888889
Q ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhH
Q 003249 615 LRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 693 (836)
Q Consensus 615 ~~l~~~~eAl~~~~~Al~l~-P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~ 693 (836)
.++|++++|.+.+..+++.. +.+..++..+...|.+.|+.++|.+.|++..+ |+...|......++..| ....
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G----~~~~ 409 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHG----RGTK 409 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcC----CHHH
Confidence 99999999999999999876 66788889999999999999999999998764 55555555554554433 5667
Q ss_pred HHHHHHHHhc--CCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHc---CCch-hHHhhHHHHHHhcCCHHHHHHHH
Q 003249 694 VVSLLEDALK--CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK---IRHT-RAHQGLARVHFLKNNKTTAYEEM 767 (836)
Q Consensus 694 ~i~~l~~Al~--~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~---l~~~-~A~~~la~~~~~~g~~~~A~~~~ 767 (836)
+++++++..+ ..|+ ..+|+.+-.++...|..++|.+.|+...+ +.|. ..+..+..++.+.|++++|++-+
T Consensus 410 A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 410 AVEMFERMIAEGVAPN----HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred HHHHHHHHHHhCCCCC----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 7888887664 2233 46899999999999999999999999875 4454 46677888999999999999776
Q ss_pred HHHHHhcCCCHHHHHHH----HHccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhh
Q 003249 768 TKLIKKARNNASAYEKR----SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLN 823 (836)
Q Consensus 768 ~kaie~~p~~a~Ay~~r----~~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~ 823 (836)
++. ...| ++..|... ...|+.+.|...+++.++++|.....|..-..+|...|+
T Consensus 486 ~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 486 RRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 543 2333 34556665 356899999999999999999998888877766665554
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.8e-12 Score=139.21 Aligned_cols=261 Identities=19% Similarity=0.126 Sum_probs=191.4
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhh----hcCCh--hhHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 003249 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEG--DKRWEDLDKATALDPTLSYPYMYRASSLM 490 (836)
Q Consensus 417 a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~----~~~~~--~eAi~d~~kAi~ldP~~~~ay~~rg~~l~ 490 (836)
-+..+|.+++..|+.++|+-.|+++..++|.+......-+ .-|.. .+++. ...+.++...+..|+--|.+++
T Consensus 234 Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~--~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 234 LMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM--DYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH--HHHHhhhhcchhhhhhhhhhhh
Confidence 3445555566666666666666666555554322221111 11111 22332 3445556666788888899999
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHh
Q 003249 491 TKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (836)
Q Consensus 491 ~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~ 569 (836)
..++++.|+..-.|+|+.+|+ .+++...|.++..+|+.++|+-.|+.|+.|.|-...
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~---------------------- 369 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE---------------------- 369 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH----------------------
Confidence 999999999999999999997 588888899999999999999999999999885422
Q ss_pred HHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH-HHH
Q 003249 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG-WIL 648 (836)
Q Consensus 570 ~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G-~il 648 (836)
.|..+-..|+..|++.||+...+.+++.-|+++.++...| .|+
T Consensus 370 ------------------------------------~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 370 ------------------------------------IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVL 413 (564)
T ss_pred ------------------------------------HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceee
Confidence 2223334577889999999999999999999999999987 444
Q ss_pred -HhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Q 003249 649 -YDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG 726 (836)
Q Consensus 649 -~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g 726 (836)
.+---.|+|...|++++.++|.+ .|-..+|-.+ .-.+.....|.++++++...+|. ..++.||.++...+
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~----~~Eg~~~D~i~LLe~~L~~~~D~----~LH~~Lgd~~~A~N 485 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELC----QVEGPTKDIIKLLEKHLIIFPDV----NLHNHLGDIMRAQN 485 (564)
T ss_pred ccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHH----HhhCccchHHHHHHHHHhhcccc----HHHHHHHHHHHHhh
Confidence 46667789999999999999987 4444343332 23334455688999999888874 68999999999999
Q ss_pred CHHHHHHHHHHHHcCCchh
Q 003249 727 QLDLAADCYSNALKIRHTR 745 (836)
Q Consensus 727 ~~deAi~~y~kAL~l~~~~ 745 (836)
++++|++.|..||.++|..
T Consensus 486 e~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 486 EPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hHHHHHHHHHHHHhcCccc
Confidence 9999999999999999863
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=144.24 Aligned_cols=241 Identities=16% Similarity=0.065 Sum_probs=187.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHH
Q 003249 483 MYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVR 562 (836)
Q Consensus 483 ~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~ 562 (836)
..+|.+|..+|.+.+|...+..+++..|-++.+..+..+|....+.+.|+.-|.+.+..-|.++.+....+. ++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~AR------i~ 300 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQAR------IH 300 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHH------HH
Confidence 347777777888888888888887777777777777777777777778887777777777777654433332 33
Q ss_pred HHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 003249 563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (836)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~ 642 (836)
+.+++++.+ +..|..++..+|.+.++.--.|.-+.--|++|-|++.|++.++..-.+++.+.
T Consensus 301 eam~~~~~a------------------~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~ 362 (478)
T KOG1129|consen 301 EAMEQQEDA------------------LQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFC 362 (478)
T ss_pred HHHHhHHHH------------------HHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHh
Confidence 334444433 55566777777777777666677777889999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHH
Q 003249 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVY 722 (836)
Q Consensus 643 ~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y 722 (836)
|+|..-+..+++|-++..|++|+..--+. -..++.|+|+|.|.
T Consensus 363 NigLCC~yaqQ~D~~L~sf~RAlstat~~-------------------------------------~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 363 NIGLCCLYAQQIDLVLPSFQRALSTATQP-------------------------------------GQAADVWYNLGFVA 405 (478)
T ss_pred hHHHHHHhhcchhhhHHHHHHHHhhccCc-------------------------------------chhhhhhhccceeE
Confidence 99999999999999999999998653111 01257899999999
Q ss_pred HhcCCHHHHHHHHHHHHcCC--chhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003249 723 VDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 784 (836)
Q Consensus 723 ~~~g~~deAi~~y~kAL~l~--~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r 784 (836)
...|++..|-.||+-||.-+ +..++.|+|.+-.+.|+.++|-..++.|-.++|.-++..+|.
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 99999999999999999875 457899999999999999888888888888888777666554
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.55 E-value=3.5e-13 Score=141.64 Aligned_cols=186 Identities=13% Similarity=0.026 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHH
Q 003249 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (836)
Q Consensus 512 ~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~ 591 (836)
.+.++.+|..+...|++++|+..|+++++.+|+..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~--------------------------------------------- 67 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP--------------------------------------------- 67 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch---------------------------------------------
Confidence 57788999999999999999999999999999863
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHhc--------CCHHHHHHH
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE---RLVYEGWILYDT--------SHCEEGLRK 660 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e---al~~~G~il~~~--------G~~eeAl~~ 660 (836)
....+++.+|.++...|++++|+..|+++++..|+++. +++.+|.+++++ |++++|++.
T Consensus 68 ----------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~ 137 (235)
T TIGR03302 68 ----------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEA 137 (235)
T ss_pred ----------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 12356788899999999999999999999999998887 799999999987 899999999
Q ss_pred HHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 661 ~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
|++++..+|+..... .+.. . +..+... ......++|.+|...|++++|+..|+++++
T Consensus 138 ~~~~~~~~p~~~~~~-~a~~--~-----------~~~~~~~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 194 (235)
T TIGR03302 138 FQELIRRYPNSEYAP-DAKK--R-----------MDYLRNR---------LAGKELYVARFYLKRGAYVAAINRFETVVE 194 (235)
T ss_pred HHHHHHHCCCChhHH-HHHH--H-----------HHHHHHH---------HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999873211 1000 0 0000000 123456889999999999999999999998
Q ss_pred CCc-----hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 003249 741 IRH-----TRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (836)
Q Consensus 741 l~~-----~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p 775 (836)
..| ..+++++|+++...|++++|.+.+.+...-.|
T Consensus 195 ~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 195 NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 743 36899999999999999999986655544333
No 83
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=4.7e-12 Score=143.95 Aligned_cols=281 Identities=12% Similarity=0.017 Sum_probs=194.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHH
Q 003249 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALECLELR-FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHM 559 (836)
Q Consensus 481 ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~r-g~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~ 559 (836)
.++..|......|+++.|.....++-+..+++..++.. +.+-..+|+++.|...|.++.+.+|+...+.
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~---------- 155 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPV---------- 155 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHH----------
Confidence 35678888888999999998888777665556666655 4556999999999999999999999873211
Q ss_pred HHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 003249 560 LVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (836)
Q Consensus 560 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e 639 (836)
....+.++...|++++|++.++++++.+|++++
T Consensus 156 -----------------------------------------------~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~ 188 (398)
T PRK10747 156 -----------------------------------------------EITRVRIQLARNENHAARHGVDKLLEVAPRHPE 188 (398)
T ss_pred -----------------------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 112244567788888888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHH----HHHHH-hhccccCCCChhHHHHHHHHHhcCCccccchHHH
Q 003249 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF----LKAYA-LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 714 (836)
Q Consensus 640 al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~----~~a~a-L~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a 714 (836)
++..++.++..+|++++|++.+++..+..+..+.-. ..++. +..............+..++ .+...++.+.+
T Consensus 189 al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~---lp~~~~~~~~~ 265 (398)
T PRK10747 189 VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN---QSRKTRHQVAL 265 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh---CCHHHhCCHHH
Confidence 888888888888888888887777776654432111 12211 11111111111222222222 12222335678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH----ccCH
Q 003249 715 LNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDR 790 (836)
Q Consensus 715 ~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~----~~~~ 790 (836)
+..++..+...|+.++|....+++++..+.. ..-+.......|+.+++++...+.++..|+++..+.-.+. .+++
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~-~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~ 344 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKRQYDE-RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW 344 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 8889999999999999999999998853322 1112223334588899999999999999999988777654 3788
Q ss_pred HHHHHHHHHhHhcCCCCcccchhhHHHHHHHhh
Q 003249 791 ELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLN 823 (836)
Q Consensus 791 ~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~ 823 (836)
++|...|+++++++|+.. .|..=|.++...|+
T Consensus 345 ~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~ 376 (398)
T PRK10747 345 QEASLAFRAALKQRPDAY-DYAWLADALDRLHK 376 (398)
T ss_pred HHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCC
Confidence 999999999999999854 45555666655554
No 84
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.55 E-value=2.2e-14 Score=125.90 Aligned_cols=90 Identities=28% Similarity=0.469 Sum_probs=85.7
Q ss_pred cEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHHHHHHHHH
Q 003249 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFA 262 (836)
Q Consensus 183 DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v~~lL~aA 262 (836)
||+|.++|+.|++||.+|++.|+||++||.+++.++....|.++ ++++.+|+.+++|+|||++. ++.+++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~--~~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLD--DVSPEDFRALLEFLYTGKLD-LPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEec--CCCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence 78999999999999999999999999999999988888999999 59999999999999999999 9999999999999
Q ss_pred HHHhHHHHHHHHH
Q 003249 263 NKFCCERLKDACD 275 (836)
Q Consensus 263 ~~~c~~~L~~~c~ 275 (836)
++|.++.|+..|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999998874
No 85
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.55 E-value=2.2e-10 Score=143.10 Aligned_cols=377 Identities=12% Similarity=0.004 Sum_probs=278.8
Q ss_pred HHHhhccchHHHHHHHHHHHhccc---hh-hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHH----hhhcCChh
Q 003249 391 CVRLLRKEYDEAEHLFEAAVNAGH---IY-SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQE----RSLYCEGD 462 (836)
Q Consensus 391 ~~~~~~g~y~eAi~~f~~Al~l~~---~~-a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~----r~~~~~~~ 462 (836)
..+...|++++|.+.|+...+.+. .. .+..+-..+...|...+|...+..... |+ ...|.. -...++.+
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd-~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PT-LSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CC-HHHHHHHHHHHHhCcCHH
Confidence 345678999999999998766432 11 222344457788999999988766543 32 223322 12335558
Q ss_pred hHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 463 KRWEDLDKATALDPT-LSYPYMYRASSLMTKQNVEAALAEINRILGF--KLALECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 463 eAi~d~~kAi~ldP~-~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l--~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
+|...|++..+..+. +...|..+-..|.+.|++++|...|+++.+. .|+...|......|.+.|++++|++.|++..
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999887643 5688999999999999999999999999976 4566777778888999999999999999986
Q ss_pred h--hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHh----cCCCCHHHHHHHHHH
Q 003249 540 T--LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE----SDAPKGVLYFRQSLL 613 (836)
Q Consensus 540 ~--l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~----~~P~~~~~~~~~gl~ 613 (836)
+ +.||...|.. ++.. +...+.++.| +..+.++.. +.|+ ...|......
T Consensus 535 ~~Gv~PD~vTYns------LI~a-~~k~G~~deA------------------~~lf~eM~~~~~gi~PD-~vTynaLI~a 588 (1060)
T PLN03218 535 SKNVKPDRVVFNA------LISA-CGQSGAVDRA------------------FDVLAEMKAETHPIDPD-HITVGALMKA 588 (1060)
T ss_pred HcCCCCCHHHHHH------HHHH-HHHCCCHHHH------------------HHHHHHHHHhcCCCCCc-HHHHHHHHHH
Confidence 5 4577432211 1111 1222334333 455666654 3455 5788888889
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--ccchHHHHHHHHHhhccccCCCC
Q 003249 614 LLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQM--KRSFEAFFLKAYALADSSQDSSC 690 (836)
Q Consensus 614 l~~l~~~~eAl~~~~~Al~l~-P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l--~p~~~a~~~~a~aL~~~~l~~~~ 690 (836)
+.+.|++++|++.|+...+.+ +.+...|..+...|.+.|++++|++.|++..+. .|+...|.....++.. .+.
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k----~G~ 664 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH----AGD 664 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCC
Confidence 999999999999999999987 667889999999999999999999999999876 5775555444444443 335
Q ss_pred hhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHc--CCch-hHHhhHHHHHHhcCCHHHHHHHH
Q 003249 691 SSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK--IRHT-RAHQGLARVHFLKNNKTTAYEEM 767 (836)
Q Consensus 691 ~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~--l~~~-~A~~~la~~~~~~g~~~~A~~~~ 767 (836)
.+.+.+.+++..+..-. -...+|+.+...|.+.|++++|++.|++..+ +.|+ ..+..+...|.+.|++++|++-|
T Consensus 665 ~eeA~~l~~eM~k~G~~--pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 665 LDKAFEILQDARKQGIK--LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred HHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56677777777653111 1257899999999999999999999998865 3454 56788888999999999999999
Q ss_pred HHHHHh--cCCCHHHHHHH----HHccCHHHHHHHHHHhHhc
Q 003249 768 TKLIKK--ARNNASAYEKR----SEYCDRELTRADLEMVTQL 803 (836)
Q Consensus 768 ~kaie~--~p~~a~Ay~~r----~~~~~~~~A~~D~~~Ai~l 803 (836)
.+..+. .|| ...|... ...|+.++|+.-+.++++.
T Consensus 743 ~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 743 SEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 987753 455 4455544 4568899999999998764
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.53 E-value=1e-12 Score=150.40 Aligned_cols=256 Identities=17% Similarity=0.104 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc-------cchh--h-HhhHHHHHHhcCCHHHHHHHHHHhHhccCCch
Q 003249 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-------GHIY--S-IAGLARLGYIKGHKLWAYEKLNSVISSVTPLG 449 (836)
Q Consensus 380 ~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l-------~~~~--a-~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~ 449 (836)
+....+..++|..|..+|+|++|+..|++|+++ ++.. . ...+|.+|..++++.+|+..|++++.+.
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~---- 271 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR---- 271 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH----
Confidence 344567778999999999999999999999997 3321 2 2348888999999999988887765552
Q ss_pred HHHHHhhhcCChhhHHHHHHHHH-hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----C-h---HHHHHHH
Q 003249 450 WMYQERSLYCEGDKRWEDLDKAT-ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-----A-L---ECLELRF 519 (836)
Q Consensus 450 ~ay~~r~~~~~~~eAi~d~~kAi-~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P-----~-~---~~~~~rg 519 (836)
.... +-+|..+.++.++|.+|...|+++||-..+++|+++-- + + ..+.+.+
T Consensus 272 -------------------e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 272 -------------------EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA 332 (508)
T ss_pred -------------------HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence 1111 23566678899999999999999999999999998632 2 2 3356689
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhc
Q 003249 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES 599 (836)
Q Consensus 520 ~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~ 599 (836)
.++..++++++|+..|++++++--+.. -+.
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~--------------------------------------------------g~~ 362 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAP--------------------------------------------------GED 362 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhc--------------------------------------------------ccc
Confidence 999999999999999999888732110 011
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA--------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 600 ~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~--------P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+|.-+..+.++|-+|...|++++|.+.|.+|+++. +...-.++.+|..+.+++++++|-+.|++++.|-+.+
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 23446788899999999999999999999999864 4446689999999999999999999999999764222
Q ss_pred HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 672 ~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.| +.+..-.+|.|||.+|..+|++++|++.-.+++..
T Consensus 443 ---------------g~------------------~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 443 ---------------GP------------------DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred ---------------CC------------------CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 12 22222468999999999999999999999999865
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.48 E-value=3.7e-12 Score=152.24 Aligned_cols=152 Identities=11% Similarity=0.054 Sum_probs=140.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHH
Q 003249 596 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 675 (836)
Q Consensus 596 al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~ 675 (836)
.....|.++.+++++|.+...+|++++|.+.++.+++++|++..++.+++.++.+++++|+|+..+++++..+|++
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---- 153 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---- 153 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC----
Confidence 3445688999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred HHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHH
Q 003249 676 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARV 753 (836)
Q Consensus 676 ~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~ 753 (836)
+.+++++|.++.++|++++|+++|+++++.+| ..++.++|.+
T Consensus 154 ------------------------------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~ 197 (694)
T PRK15179 154 ------------------------------------AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQS 197 (694)
T ss_pred ------------------------------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 46899999999999999999999999998654 4799999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH-HHc
Q 003249 754 HFLKNNKTTAYEEMTKLIKKARNNASAYEKR-SEY 787 (836)
Q Consensus 754 ~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r-~~~ 787 (836)
+...|+.++|...|.+||+....-+.+|.++ +++
T Consensus 198 l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (694)
T PRK15179 198 LTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDL 232 (694)
T ss_pred HHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHH
Confidence 9999999999999999999998888999887 444
No 88
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.48 E-value=5.6e-13 Score=129.86 Aligned_cols=155 Identities=17% Similarity=0.292 Sum_probs=126.2
Q ss_pred CCCCccccEEEEeC---CeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCH
Q 003249 176 SGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTP 252 (836)
Q Consensus 176 ~~~~~~~DV~~~v~---~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~ 252 (836)
.+++.++|++|.++ ++.|+|||.|||++|++++ |.++-.|.+ ++..+. ++.+++|..++.||||++++ +..
T Consensus 61 ~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~deks-e~~~~d--Dad~Ea~~t~iRWIYTDEid-fk~ 134 (280)
T KOG4591|consen 61 LEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKS-EELDLD--DADFEAFHTAIRWIYTDEID-FKE 134 (280)
T ss_pred hhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcch-hhhccc--ccCHHHHHHhheeeeccccc-ccc
Confidence 45778999999998 5789999999999999875 555543332 444555 69999999999999999998 654
Q ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhccc-------CCChHH
Q 003249 253 --NLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD-------CLNDER 323 (836)
Q Consensus 253 --~~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~-------~l~~~~ 323 (836)
+.+.+|+.+|++|..+.|+..|+..+...+ .+++|+.+++.|.+.++..|...|-+.|...-|. .++..-
T Consensus 135 dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l-~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL~~a~FaqMs~aL 213 (280)
T KOG4591|consen 135 DDEFLLELCELANRFQLELLKERCEKGLGALL-HVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDLGKADFAQMSAAL 213 (280)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-hHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhccccChHHHHhccHHH
Confidence 457899999999999999999999998887 6899999999999999999999999888766543 455556
Q ss_pred HHHHHhcccccchh
Q 003249 324 VVEIFSHANRQHRS 337 (836)
Q Consensus 324 ~~~ll~~~~~~~r~ 337 (836)
+-+++.+.....-+
T Consensus 214 LYklId~kTe~~LH 227 (280)
T KOG4591|consen 214 LYKLIDGKTENPLH 227 (280)
T ss_pred HHHHHcCCCcchhH
Confidence 66777776443333
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=2.6e-10 Score=129.16 Aligned_cols=157 Identities=15% Similarity=0.015 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcC--
Q 003249 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC-- 459 (836)
Q Consensus 384 ~a~~~lG~~~~~~g~y~eAi~~f~~Al~l--~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~-- 459 (836)
.+++....-.++.|+|...++..++.++. .|..+.+-.|......|+.++|+.....++..++.....|.-.|.+.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 46666777777888888877777777764 45666666777777777777777776666665555555555555432
Q ss_pred --ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 460 --EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 460 --~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
++++||.+|..|+.++|+|...|..++....++++++.....-++.++++|+. ..|...+..+.-.|+|..|+.-.+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22566666666666666666666666666666666666666666666666653 334445555666666666655444
Q ss_pred HHHh
Q 003249 537 AILT 540 (836)
Q Consensus 537 ~al~ 540 (836)
.-.+
T Consensus 168 ef~~ 171 (700)
T KOG1156|consen 168 EFEK 171 (700)
T ss_pred HHHH
Confidence 3333
No 90
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.45 E-value=1.3e-11 Score=148.63 Aligned_cols=265 Identities=11% Similarity=-0.019 Sum_probs=203.7
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 003249 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG 550 (836)
Q Consensus 472 i~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~ 550 (836)
...+|.+..+|..+..++..++++++|+...+.+++.+|+ ...|+..|.++.+.+++.+|..- .++.+-|+...+
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-- 99 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-- 99 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch--
Confidence 4558999999999999999999999999999999999998 57888899999999998888876 777776665321
Q ss_pred hHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003249 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (836)
Q Consensus 551 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~A 630 (836)
..+..+++.+...|.+-.+++.+|.+|.++|+.++|.+.|+++
T Consensus 100 -------------------------------------~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 100 -------------------------------------AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred -------------------------------------hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1244556666667888899999999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCcccc-
Q 003249 631 RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL- 709 (836)
Q Consensus 631 l~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~- 709 (836)
++++|+++.++++.|..|... +.++|++.+.+|++..=+. ..........++.+++.++..
T Consensus 143 L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~-----------------kq~~~~~e~W~k~~~~~~~d~d 204 (906)
T PRK14720 143 VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK-----------------KQYVGIEEIWSKLVHYNSDDFD 204 (906)
T ss_pred HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh-----------------hcchHHHHHHHHHHhcCcccch
Confidence 999999999999999999999 9999999999999763111 111122223333333333322
Q ss_pred ----------------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHH
Q 003249 710 ----------------RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLI 771 (836)
Q Consensus 710 ----------------~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kai 771 (836)
+.++.+.-+=.-|.+.++|++++..+..+|++++. .|..+++.+|..+ |.
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k--Y~---------- 272 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK--YK---------- 272 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH--cc----------
Confidence 23455566668899999999999999999999765 5777777776532 21
Q ss_pred HhcCCCHHHHHHHHHccC----HHHHHHHHHHhHhcCCCCcc
Q 003249 772 KKARNNASAYEKRSEYCD----RELTRADLEMVTQLDPLRVY 809 (836)
Q Consensus 772 e~~p~~a~Ay~~r~~~~~----~~~A~~D~~~Ai~l~P~~~~ 809 (836)
+..+.+=|.+.+.+++ +..+++||++-+-.+|...-
T Consensus 273 --~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 273 --DHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred --CcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCEE
Confidence 1222333455555543 58999999999999997653
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=4.8e-12 Score=151.32 Aligned_cols=150 Identities=9% Similarity=-0.059 Sum_probs=133.7
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 003249 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (836)
Q Consensus 470 kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~ 548 (836)
.-..--|+++.++.++|.+..+.|++++|...+.++++++|+ ..+..+++.++.+++++++|+..+++++..+|++
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~--- 153 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS--- 153 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---
Confidence 334456889999999999999999999999999999999998 4788899999999999999999999999888776
Q ss_pred hhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003249 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (836)
Q Consensus 549 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~ 628 (836)
+.+++.+|.++.++|++++|++.|+
T Consensus 154 -------------------------------------------------------~~~~~~~a~~l~~~g~~~~A~~~y~ 178 (694)
T PRK15179 154 -------------------------------------------------------AREILLEAKSWDEIGQSEQADACFE 178 (694)
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4556778888999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchHHHHHH
Q 003249 629 LARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFLK 677 (836)
Q Consensus 629 ~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~-p~~~a~~~~ 677 (836)
+++..+|+++++++++|.++..+|+.++|...|++||+.. |....+...
T Consensus 179 ~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 179 RLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 9999999999999999999999999999999999999987 555444433
No 92
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=6.3e-13 Score=139.04 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLE-LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~-~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~ 557 (836)
++-...-|+-+++.++|++|+..|++||+++|++..|| +|+.+|.++|.|+.|++|++.||.+||.|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys----------- 149 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS----------- 149 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH-----------
Confidence 34566788999999999999999999999999866544 799999999999999999999999998874
Q ss_pred HHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003249 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (836)
Q Consensus 558 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~ 637 (836)
.+|-++|++|..+|++++|++.|++|++++|++
T Consensus 150 -----------------------------------------------kay~RLG~A~~~~gk~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 150 -----------------------------------------------KAYGRLGLAYLALGKYEEAIEAYKKALELDPDN 182 (304)
T ss_pred -----------------------------------------------HHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc
Confidence 345667778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHHHHHhc
Q 003249 638 HERLVYEGWILYDTSHCE---EGLRKAEESIQM 667 (836)
Q Consensus 638 ~eal~~~G~il~~~G~~e---eAl~~~~~Ai~l 667 (836)
....-++.++-.+++.-. .+...++-+-.+
T Consensus 183 e~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 183 ESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred HHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence 988888888888777776 555555555444
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.44 E-value=3.1e-12 Score=131.22 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=98.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHH
Q 003249 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWIL-YDTSH--CEEGLRKAEESI 665 (836)
Q Consensus 589 aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il-~~~G~--~eeAl~~~~~Ai 665 (836)
.+..+.++++.+|+++.+|+.+|.++...|++++|+..|++|++++|++++++..+|.++ +..|+ +++|++.+++++
T Consensus 58 ~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 58 QLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 466778888888999999999999888999999999999999999999999998888875 56677 488888888888
Q ss_pred hcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 666 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 666 ~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
+++|++ +.++.++|.++...|++++|+.+|++++++.|+
T Consensus 138 ~~dP~~----------------------------------------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 138 ALDANE----------------------------------------VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HhCCCC----------------------------------------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 887766 457888888899999999999999999888665
No 94
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.44 E-value=2e-09 Score=121.61 Aligned_cols=366 Identities=12% Similarity=0.036 Sum_probs=271.9
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCch--HHHHHhhh--c
Q 003249 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLG--WMYQERSL--Y 458 (836)
Q Consensus 385 a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~--~ay~~r~~--~ 458 (836)
.+..-+..+...+-++-|...|..||+..|.. .|.-.+..--.-|..++-...+.+++..-|... |+...... -
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 33344445556666777778888888775543 455444444555667777788888888777543 33333222 2
Q ss_pred CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~a 538 (836)
++.-.|...+.+|++.+|++.+.|..---+..+..+++.|...|.||-...|....|+.-+.+-..++..++|++.++.+
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~ 677 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEA 677 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHH
Confidence 55578888999999999999999998888889999999999999999999998888888888888899999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003249 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (836)
Q Consensus 539 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~ 618 (836)
|+.-|++...+.. .+.+++..++.+.| -..|.+.+..-|+...+|..++.+=.+.|
T Consensus 678 lk~fp~f~Kl~lm------lGQi~e~~~~ie~a------------------R~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 678 LKSFPDFHKLWLM------LGQIEEQMENIEMA------------------REAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHhCCchHHHHHH------HhHHHHHHHHHHHH------------------HHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 9999999775543 34555655555555 35677888889999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHH
Q 003249 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 698 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l 698 (836)
.+-.|...++++.--||+++..|...-..-+..|..++|-....+||+--|++.-.+..++-+...+ +. ....
T Consensus 734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~---~r----kTks 806 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP---QR----KTKS 806 (913)
T ss_pred chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc---cc----chHH
Confidence 9999999999999999999999998888889999999999999999988888865555555443322 11 1112
Q ss_pred HHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 003249 699 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (836)
Q Consensus 699 ~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~ 776 (836)
.+|++....+ +..+...|..+....+++.|.+-|.+|++++|. .+...+=..+...|.-++-.+.+++-..-.|.
T Consensus 807 ~DALkkce~d---phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 807 IDALKKCEHD---PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHhccCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 3344333333 356677777788888888888888888887654 45555555666677666666777777777777
Q ss_pred CHHHHHHH
Q 003249 777 NASAYEKR 784 (836)
Q Consensus 777 ~a~Ay~~r 784 (836)
+..-|..-
T Consensus 884 hG~~W~av 891 (913)
T KOG0495|consen 884 HGELWQAV 891 (913)
T ss_pred CCcHHHHH
Confidence 76666543
No 95
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=5e-12 Score=132.40 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhc
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~ 683 (836)
++-...+|.-+.+.++|++|+..|.+||+++|.++-.|-+|+.+|.++|+|+.|+++++.||+|+|++
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y------------ 148 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY------------ 148 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH------------
Confidence 56678899999999999999999999999999999999999999999999999999999999999877
Q ss_pred cccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHH
Q 003249 684 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKT 761 (836)
Q Consensus 684 ~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~ 761 (836)
..+|..+|.+|..+|++++|++.|+|||+|+|. ....+|.++-.+++..+
T Consensus 149 ----------------------------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 149 ----------------------------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----------------------------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 247889999999999999999999999999876 34556666665555443
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.40 E-value=5.1e-12 Score=129.63 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=87.4
Q ss_pred cCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhH
Q 003249 492 KQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (836)
Q Consensus 492 ~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~ 570 (836)
.++.++++..+.++++.+|+ .+.|..+|.+|..+|++++|+..|+++++++|++..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~----------------------- 108 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE----------------------- 108 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------------
Confidence 55666666677777777765 456666677777777777777777777776666532
Q ss_pred HHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003249 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL-LRLNC--PEAAMRSLQLARQHAASDHERLVYEGWI 647 (836)
Q Consensus 571 a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l-~~l~~--~~eAl~~~~~Al~l~P~~~eal~~~G~i 647 (836)
++...|.++ ...|+ +++|.+.++++++++|+++++++++|.+
T Consensus 109 -----------------------------------~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~ 153 (198)
T PRK10370 109 -----------------------------------LYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASD 153 (198)
T ss_pred -----------------------------------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 333444432 44555 4788888888888888888888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcccch
Q 003249 648 LYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 648 l~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
++.+|++++|+..|++++++.|..
T Consensus 154 ~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 154 AFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999998887654
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=2.9e-10 Score=131.71 Aligned_cols=324 Identities=15% Similarity=0.061 Sum_probs=197.1
Q ss_pred CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHH-HHHHHH-----hcCCHHHHH
Q 003249 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLEL-RFCFFL-----ALEDYQAAL 532 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~-rg~~~~-----~lg~~~~Ai 532 (836)
|..++|++.+++....-++....+-.||.++..+|++++|...|...|+.||++..|+. +..+.. ...+.+.-.
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 45578888888887777888888888888888888888888888888888887544442 333331 123456667
Q ss_pred HHHHHHHhhCCCchhhhhhHH-----HHHHHHHHHHHhhh------HhHHHHHHhhhhccCcccccchH-HHHHHHH---
Q 003249 533 CDVQAILTLSPDYRMFEGRVA-----ASQLHMLVREHIDN------WTIADCWLQLYDRWSSVDDIGSL-SVIYQML--- 597 (836)
Q Consensus 533 ~d~~~al~l~P~~~~~~~~~~-----~~~~~~~l~~~~~~------~~~a~~~~~~~~~~~~~~~~~aL-~~~~~al--- 597 (836)
+-|++.-+..|...... ++. ...+...+...... -..-.....+|.......-++.+ ..+...+
T Consensus 98 ~~y~~l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~ 176 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESN 176 (517)
T ss_pred HHHHHHHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhccc
Confidence 77777777776542110 000 00000000000000 00000011111111111111111 1111111
Q ss_pred ---------hcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 598 ---------ESDAPKG--VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 598 ---------~~~P~~~--~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
+..|... ++++.++..+..+|++++|++.+++||++.|..++.|+.+|.||...|++++|.+.++.|-+
T Consensus 177 ~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 177 GSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred CCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1223333 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--ch
Q 003249 667 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HT 744 (836)
Q Consensus 667 l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~--~~ 744 (836)
+++.+- | .-+..+..+...|+.++|......-..-+ +.
T Consensus 257 LD~~DR--y--------------------------------------iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~ 296 (517)
T PF12569_consen 257 LDLADR--Y--------------------------------------INSKCAKYLLRAGRIEEAEKTASLFTREDVDPL 296 (517)
T ss_pred CChhhH--H--------------------------------------HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc
Confidence 876541 1 11122334566678888887776665543 11
Q ss_pred ---------hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHccCHHHHHHHHHHhH-hcCCCCcccchhh
Q 003249 745 ---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVT-QLDPLRVYPYRYR 814 (836)
Q Consensus 745 ---------~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~~~~~~A~~D~~~Ai-~l~P~~~~~y~~r 814 (836)
.-..--|.+|.++|++-.|+..|..+.++--..-.=-+-=..||-+.+.+..|-.-+ .-|-.+..|++.|
T Consensus 297 ~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~r 376 (517)
T PF12569_consen 297 SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRR 376 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHH
Confidence 123456778888888888888888777653322221112234555666655555444 4566777888888
Q ss_pred HHHHHHHhh
Q 003249 815 AAGLIVFLN 823 (836)
Q Consensus 815 ~~~~~~~~~ 823 (836)
|+......=
T Consensus 377 aa~~ai~iY 385 (517)
T PF12569_consen 377 AAKGAIRIY 385 (517)
T ss_pred HHHHHHHHH
Confidence 877665543
No 98
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.35 E-value=7.4e-09 Score=117.56 Aligned_cols=347 Identities=14% Similarity=0.048 Sum_probs=217.1
Q ss_pred HHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh----cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 003249 425 GYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (836)
Q Consensus 425 ~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~----~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~ 500 (836)
.+..++|...++...+++..+|.-|+..-..|+ .+..++|......++..||.+.-.|.-.|.++...++|++||.
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 356778889999999999999999998877775 2555899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhh
Q 003249 501 EINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (836)
Q Consensus 501 ~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~ 579 (836)
.|..|+.++|++ +.|.-++.+..++|||+.....=.+.++++|.+...|...+..+.+...+. .....-..+.+..+
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~--~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK--MALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhc
Confidence 999999999975 778889999999999999999999999999999877766665543332222 11111111222111
Q ss_pred ccCcccccc-hHHHHHH------------H----HhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 003249 580 RWSSVDDIG-SLSVIYQ------------M----LESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (836)
Q Consensus 580 ~~~~~~~~~-aL~~~~~------------a----l~~~P---~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e 639 (836)
...+..+.+ +...+++ + ....| ++...-..+|.++.+++++++|...|+..+..+|++.+
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 111111111 1111111 1 11111 12222334556666777777777777777777777766
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHHHHHhcccchHH------HHHHHHH-----------hhccc------------cCCC
Q 003249 640 RLVYEGWILYDTSHCEEGL-RKAEESIQMKRSFEA------FFLKAYA-----------LADSS------------QDSS 689 (836)
Q Consensus 640 al~~~G~il~~~G~~eeAl-~~~~~Ai~l~p~~~a------~~~~a~a-----------L~~~~------------l~~~ 689 (836)
.+..+=.++.+--+--+++ ..|...=+.-|..+. .+..+-. +-..| -+|.
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~ 334 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE 334 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh
Confidence 6655555543112222233 233322222222210 0000000 00000 1122
Q ss_pred ChhHHHHH----HHHHhcCC-----c------cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchh--HHhhHHH
Q 003249 690 CSSTVVSL----LEDALKCP-----S------DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR--AHQGLAR 752 (836)
Q Consensus 690 ~~~~~i~~----l~~Al~~~-----~------~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~--A~~~la~ 752 (836)
... .++. |...+.-. . ...-..+.++-+..-|..+|+++.|....+.||.--|+. -+.-.|+
T Consensus 335 k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaR 413 (700)
T KOG1156|consen 335 KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKAR 413 (700)
T ss_pred HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 111 1111 11111100 0 000124667788888999999999999999999888773 4566788
Q ss_pred HHHhcCCHHHHHHHHHHHHHhc
Q 003249 753 VHFLKNNKTTAYEEMTKLIKKA 774 (836)
Q Consensus 753 ~~~~~g~~~~A~~~~~kaie~~ 774 (836)
++.=.|++++|..-|..+-+.+
T Consensus 414 I~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhcc
Confidence 8888999999999888888876
No 99
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.1e-09 Score=115.25 Aligned_cols=256 Identities=14% Similarity=0.088 Sum_probs=205.2
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHhcCCHHHHHH
Q 003249 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL------ECLELRFCFFLALEDYQAALC 533 (836)
Q Consensus 460 ~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~------~~~~~rg~~~~~lg~~~~Ai~ 533 (836)
..++|+..|-..++.||.-.++...+|+.+...|..|.||..-.. +--.|+. -+++.+|.-|...|-++.|..
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~-L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQT-LLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHH-HhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 448888889999999999999999999999999999999996554 4456752 345667888999999999999
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCC-----CHHHHH
Q 003249 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-----KGVLYF 608 (836)
Q Consensus 534 d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~-----~~~~~~ 608 (836)
-|...... |+++. .+.+.+-.+|+....|.+|. .+-.+...+.|. -+.-|.
T Consensus 129 ~f~~L~de-~efa~-----~AlqqLl~IYQ~treW~KAI------------------d~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 129 IFNQLVDE-GEFAE-----GALQQLLNIYQATREWEKAI------------------DVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHhcc-hhhhH-----HHHHHHHHHHHHhhHHHHHH------------------HHHHHHHHcCCccchhHHHHHHH
Confidence 99987653 55532 34555667899999999883 222222222222 145677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCC
Q 003249 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 688 (836)
Q Consensus 609 ~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~ 688 (836)
.++..+...++.+.|+..+.+|++-+|+...+=..+|.+....|+|++|++.++.+++.+|.+-
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl---------------- 248 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL---------------- 248 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH----------------
Confidence 8888888999999999999999999999999999999999999999999999999999988771
Q ss_pred CChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-hHHhhHHHHHHhcCCHHHHHHHH
Q 003249 689 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEM 767 (836)
Q Consensus 689 ~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-~A~~~la~~~~~~g~~~~A~~~~ 767 (836)
+.+..-|-.+|..+|+.++.+.-..++.+..+. .+..-++.+-....=.++|-.-+
T Consensus 249 -----------------------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l 305 (389)
T COG2956 249 -----------------------SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYL 305 (389)
T ss_pred -----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHH
Confidence 456777888999999999999999999998643 45566666666655567888888
Q ss_pred HHHHHhcCCCHH
Q 003249 768 TKLIKKARNNAS 779 (836)
Q Consensus 768 ~kaie~~p~~a~ 779 (836)
++-+...|.---
T Consensus 306 ~~Ql~r~Pt~~g 317 (389)
T COG2956 306 TRQLRRKPTMRG 317 (389)
T ss_pred HHHHhhCCcHHH
Confidence 888888887533
No 100
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.33 E-value=1.3e-11 Score=132.43 Aligned_cols=283 Identities=13% Similarity=0.029 Sum_probs=189.7
Q ss_pred HHHHHHhhccchHHHHHHHHHHHhccchh------hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCCh
Q 003249 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIY------SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (836)
Q Consensus 388 ~lG~~~~~~g~y~eAi~~f~~Al~l~~~~------a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~ 461 (836)
.-|.-++..|++...+..|++||+.+-.+ .|..+|.+|+..++|.+|++...--|..-
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla---------------- 85 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA---------------- 85 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH----------------
Confidence 45677788999999999999999975332 35566777777777777766643222111
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------ChHHHHHHHHHHHhcCCHH-----
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-------ALECLELRFCFFLALEDYQ----- 529 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P-------~~~~~~~rg~~~~~lg~~~----- 529 (836)
+.+.-.-..+.+--|+|+++--+|.|++|+....+-+.+.- ...++||+|.+|...|+.-
T Consensus 86 --------r~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~p 157 (639)
T KOG1130|consen 86 --------RLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAP 157 (639)
T ss_pred --------HHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCCh
Confidence 11111112234456889999999999999998888776543 2367899999998887642
Q ss_pred --------HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCC
Q 003249 530 --------AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 601 (836)
Q Consensus 530 --------~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P 601 (836)
++-.+++.|.+.-- +.+ .. -..++-.-
T Consensus 158 ee~g~f~~ev~~al~~Av~fy~---------------eNL-----------------------------~l-~~~lgDr~ 192 (639)
T KOG1130|consen 158 EEKGAFNAEVTSALENAVKFYM---------------ENL-----------------------------EL-SEKLGDRL 192 (639)
T ss_pred hhcccccHHHHHHHHHHHHHHH---------------HHH-----------------------------HH-HHHhhhHH
Confidence 22222333222100 000 00 00011112
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHH
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 675 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~------~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~ 675 (836)
....+|-++|..|.-+|+++.|+..-+.=+++.-.. -.|+.++|..+.-+|+++.|++.|.+++.+
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L-------- 264 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL-------- 264 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH--------
Confidence 235677788889999999999998766655554332 347889999999999999999999998854
Q ss_pred HHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--------chhHH
Q 003249 676 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAH 747 (836)
Q Consensus 676 ~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~--------~~~A~ 747 (836)
|+.+++ .+. .++.-+.||++|.-+.++++||+++++-|.|. ..+|.
T Consensus 265 --Aielg~----------------r~v--------EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Rac 318 (639)
T KOG1130|consen 265 --AIELGN----------------RTV--------EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRAC 318 (639)
T ss_pred --HHHhcc----------------hhH--------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 222222 111 14567889999999999999999999988762 34788
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHh
Q 003249 748 QGLARVHFLKNNKTTAYEEMTKLIKK 773 (836)
Q Consensus 748 ~~la~~~~~~g~~~~A~~~~~kaie~ 773 (836)
|.+|.++...|..+.|+---.+.+++
T Consensus 319 wSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 319 WSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999888777666644
No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.33 E-value=1.7e-11 Score=117.22 Aligned_cols=113 Identities=11% Similarity=0.038 Sum_probs=95.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+.++++.+|++..+.+.+|..+...|++++|++.+++++..+|+++++++.+|.+++.+|++++|+..|+++++++|..
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46678888888888888888888888888888888888888888888888888888888888888888888888776654
Q ss_pred HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 672 ~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
+..+.++|.+|...|++++|+..|++++++.|.
T Consensus 85 ----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 85 ----------------------------------------PRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred ----------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 356788888888888888888888888888664
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.31 E-value=6.2e-09 Score=130.71 Aligned_cols=373 Identities=13% Similarity=-0.041 Sum_probs=233.2
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhccc-hhhHhhHHHHHHhcCCHHHHHHHHHHh----HhccCCc----hHHHHHh
Q 003249 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGH-IYSIAGLARLGYIKGHKLWAYEKLNSV----ISSVTPL----GWMYQER 455 (836)
Q Consensus 385 a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~-~~a~~~la~~~~~~G~~~~A~~~~~~a----i~~~~~~----~~ay~~r 455 (836)
.+...+..+...|++.+|+.++..+=.... .......|......|+..........+ ...+|.. +|.+...
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~ 422 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ 422 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC
Confidence 344556677888999888776654311100 112223344556677766655555432 1122322 3333333
Q ss_pred hhcCChhhHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh------HHHHHHHH
Q 003249 456 SLYCEGDKRWEDLDKATALDPT---------LSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL------ECLELRFC 520 (836)
Q Consensus 456 ~~~~~~~eAi~d~~kAi~ldP~---------~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~------~~~~~rg~ 520 (836)
++.++|...+.++.+.-+. .......+|.++...|++++|...+.++++..|.. .++..+|.
T Consensus 423 ---g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 423 ---HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred ---CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 3447888878777654222 12344567888899999999999999999865531 23455788
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhc-
Q 003249 521 FFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES- 599 (836)
Q Consensus 521 ~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~- 599 (836)
++...|++++|+..+++++.+.......+...........+....++++.|.. .+.+++..
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~------------------~~~~al~~~ 561 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYE------------------TQEKAFQLI 561 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHH------------------HHHHHHHHH
Confidence 89999999999999999998765432222222222233334444555555532 22222221
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 600 -------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA-----SDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 600 -------~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P-----~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
.|.....+..+|.++...|++++|.+.+++++.+.. ....++..+|.++...|++++|...+++++.+
T Consensus 562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 122344566789999999999999999999987633 23566778999999999999999999999876
Q ss_pred ccchH--HHH--HHHHHhhccccCCCChhHHHHHHHHHhcCCcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003249 668 KRSFE--AFF--LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL-RKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (836)
Q Consensus 668 ~p~~~--a~~--~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~-~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~ 742 (836)
.+... ..+ .............+....+...+........... -....+.++|.++..+|++++|+..+++|++..
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 642 LGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred HhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 43221 000 0000000000112233333444433332111100 011235789999999999999999999999861
Q ss_pred --------chhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCH
Q 003249 743 --------HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 778 (836)
Q Consensus 743 --------~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a 778 (836)
...++..+|.++...|+.++|.+.+.+|+++.....
T Consensus 722 ~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 722 RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 135788999999999999999999999999875543
No 103
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=3.7e-11 Score=114.80 Aligned_cols=114 Identities=17% Similarity=0.128 Sum_probs=81.0
Q ss_pred HHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhh
Q 003249 501 EINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYD 579 (836)
Q Consensus 501 ~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~ 579 (836)
.|.++++++|+ ....+.+|..+...|++++|+..|+++++++|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------------------------- 50 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---------------------------------- 50 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc----------------------------------
Confidence 45666666665 3455566666667777777776666666665554
Q ss_pred ccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003249 580 RWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659 (836)
Q Consensus 580 ~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~ 659 (836)
+.+|+++|.++...|++++|+..++++++++|++++.++++|.++..+|++++|+.
T Consensus 51 ------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 51 ------------------------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALK 106 (135)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 23455566666677777777777777777777777888888888888888888888
Q ss_pred HHHHHHhcccchH
Q 003249 660 KAEESIQMKRSFE 672 (836)
Q Consensus 660 ~~~~Ai~l~p~~~ 672 (836)
.|+++++++|+..
T Consensus 107 ~~~~al~~~p~~~ 119 (135)
T TIGR02552 107 ALDLAIEICGENP 119 (135)
T ss_pred HHHHHHHhccccc
Confidence 8888888887763
No 104
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=5.5e-10 Score=117.51 Aligned_cols=265 Identities=16% Similarity=0.080 Sum_probs=183.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH
Q 003249 483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (836)
Q Consensus 483 ~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l 561 (836)
+..|+-+.-.++.+.|+..|-.+++.+|. .++...+|.+|.+.|..+.||+-.+ +|-..|+... ..+
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ-~L~~spdlT~-~qr---------- 106 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQ-TLLESPDLTF-EQR---------- 106 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHH-HHhcCCCCch-HHH----------
Confidence 45677777889999999999999999997 5777789999999999999999665 5556788742 111
Q ss_pred HHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 003249 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (836)
Q Consensus 562 ~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal 641 (836)
..+.+.+|.=|..-|-++.|...|.......---..|+
T Consensus 107 ------------------------------------------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Al 144 (389)
T COG2956 107 ------------------------------------------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGAL 144 (389)
T ss_pred ------------------------------------------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 11223344445566667778888887777666666788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccchH----HHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHH
Q 003249 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSFE----AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN 717 (836)
Q Consensus 642 ~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~----a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~n 717 (836)
-.+-.||....++++||+..++-.++.+... |.|.- .|+...+..++.+.+..++.+|++..+...| |-.-
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC--ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR---Asi~ 219 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC--ELAQQALASSDVDRARELLKKALQADKKCVR---ASII 219 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH--HHHHHHhhhhhHHHHHHHHHHHHhhCcccee---hhhh
Confidence 8888999999999999999998888876541 22221 1333334445555667777777776666543 5566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCch---hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHH--HHHHHHH-ccCHH
Q 003249 718 LGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS--AYEKRSE-YCDRE 791 (836)
Q Consensus 718 lG~~y~~~g~~deAi~~y~kAL~l~~~---~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~--Ay~~r~~-~~~~~ 791 (836)
+|.++...|+|+.|++.++++++-+|. ....-|..+|..+|+.+++..-.+++++.+++-+- +.....+ .--.+
T Consensus 220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~ 299 (389)
T COG2956 220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGID 299 (389)
T ss_pred hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChH
Confidence 788888888888888888888877765 35566667777788888877777777777666532 1222222 22245
Q ss_pred HHHHHHHHhHhcCCC
Q 003249 792 LTRADLEMVTQLDPL 806 (836)
Q Consensus 792 ~A~~D~~~Ai~l~P~ 806 (836)
.|..-..+=++-+|+
T Consensus 300 ~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 300 AAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHhhCCc
Confidence 566666666666665
No 105
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.27 E-value=8.7e-08 Score=108.62 Aligned_cols=361 Identities=11% Similarity=0.020 Sum_probs=251.1
Q ss_pred hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhh----hcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 003249 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (836)
Q Consensus 416 ~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~----~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~ 491 (836)
..|..-+......+..+-|...|..++..+|..-..|.... .++..++=.+.+.+|++--|.....|...+-.+..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 34666667777777788888888888888887655554443 34555666677889999999888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhH
Q 003249 492 KQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (836)
Q Consensus 492 ~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~ 570 (836)
-|+..+|...+..|++.+|+. +.|..--.+-....+++.|...|.+|-...|.-.-++-....... ++..+.
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~-------ld~~ee 669 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY-------LDNVEE 669 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH-------hhhHHH
Confidence 899999999999999999975 445444456677788899999999988888876443332211111 111112
Q ss_pred HHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 003249 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD 650 (836)
Q Consensus 571 a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~ 650 (836)
++..+..+|+..|+...+|..+|.++...++.+.|...|...++.-|...-.|..++.+--+
T Consensus 670 ------------------A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 670 ------------------ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred ------------------HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 34556777888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHH
Q 003249 651 TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDL 730 (836)
Q Consensus 651 ~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~de 730 (836)
.|..-.|-..++++.--+|.+..++...+-+. +..++...+..+.-+|++-.+.+ +..|..-=-..-.-++--.
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E---lR~gn~~~a~~lmakALQecp~s---g~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRME---LRAGNKEQAELLMAKALQECPSS---GLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCcc---chhHHHHHHhccCcccchH
Confidence 88888888888888888888876666554332 33455556666666776433322 2222211111111122222
Q ss_pred HHHHHHHHHcCCchhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHH--HHHHHH--HccCHHHHHHHHHHhHhcCCC
Q 003249 731 AADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS--AYEKRS--EYCDRELTRADLEMVTQLDPL 806 (836)
Q Consensus 731 Ai~~y~kAL~l~~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~--Ay~~r~--~~~~~~~A~~D~~~Ai~l~P~ 806 (836)
+++..++. + .+.......|++++...+++.|.+=|.++++++|++.+ ||+-+- +.|.-+.-.+-|++-..-+|+
T Consensus 806 s~DALkkc-e-~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 806 SIDALKKC-E-HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHhc-c-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 22222221 0 12345567788999999999999999999999999854 556663 457777777888888888887
Q ss_pred Ccc
Q 003249 807 RVY 809 (836)
Q Consensus 807 ~~~ 809 (836)
+-+
T Consensus 884 hG~ 886 (913)
T KOG0495|consen 884 HGE 886 (913)
T ss_pred CCc
Confidence 643
No 106
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.26 E-value=2.3e-11 Score=130.11 Aligned_cols=179 Identities=17% Similarity=0.173 Sum_probs=145.8
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCccee--EecCCCCCHHHHHHHHHhhccCcCCCCCHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDI--DLSENNISPSGLRIISDFSVTGSLNGVTPN 253 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I--~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~ 253 (836)
..++.-+||++.+-|++.+.||.-|. .|+||.+||.|.++|+++..| +|+|++|+..+|..++.=+|.++|. |..+
T Consensus 64 f~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l~ 141 (488)
T KOG4682|consen 64 FLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKLS 141 (488)
T ss_pred HhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccHH
Confidence 45788899999999999999999995 689999999999999999655 5677799999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhcccCCCh--------HHHH
Q 003249 254 LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLND--------ERVV 325 (836)
Q Consensus 254 ~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~~l~~--------~~~~ 325 (836)
.|..+|.+|..+..+.|.+.|...+...+ ++++|+.+++.+..++-..+...|+++++.|+....+. +-+.
T Consensus 142 dv~gvlAaA~~lqldgl~qrC~evMie~l-spkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm~ 220 (488)
T KOG4682|consen 142 DVVGVLAAACLLQLDGLIQRCGEVMIETL-SPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLMK 220 (488)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhc-ChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHHH
Confidence 99999999999999999999998887777 67899999999999999999999999999887553322 2333
Q ss_pred HHHhcccccchhhhhcccchhH-HHHHHHhhhccCCCC
Q 003249 326 EIFSHANRQHRSIMVGLASFSL-YCLLSEVAMNLDPRS 362 (836)
Q Consensus 326 ~ll~~~~~~~r~~~~~~~~~~l-~~lL~~V~~~~~~~s 362 (836)
.++.|++. .+-.+.|.+ ..+..|+.+.+-+..
T Consensus 221 ~ll~SpnL-----fvmq~EfdLyttlk~WmfLql~pd~ 253 (488)
T KOG4682|consen 221 QLLGSPNL-----FVMQVEFDLYTTLKKWMFLQLVPDW 253 (488)
T ss_pred HHhCCCCe-----EEEEeeehHHHHHHHHHHhhhcccc
Confidence 34444432 122445654 345666766665433
No 107
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.22 E-value=9.6e-12 Score=142.10 Aligned_cols=137 Identities=18% Similarity=0.294 Sum_probs=117.3
Q ss_pred CCccccEEEEe-CCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhcc-CcCCC----CC
Q 003249 178 DQVLRNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNG----VT 251 (836)
Q Consensus 178 ~~~~~DV~~~v-~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Yt-g~l~~----~~ 251 (836)
.....|+.+.. +|++++|||++|.+++.||..||..-+.|+..-.+... .+..+.|..+|+|+|+ ++... -.
T Consensus 707 h~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~--p~~~e~m~ivLdylYs~d~~~~~k~~~~ 784 (1267)
T KOG0783|consen 707 HEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS--PLTVEHMSIVLDYLYSDDKVELFKDLKE 784 (1267)
T ss_pred CccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC--cchHHHHHHHHHHHHccchHHHHhccch
Confidence 34455666655 88889999999999999999999999999998777776 5889999999999994 44431 13
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhccc
Q 003249 252 PNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317 (836)
Q Consensus 252 ~~~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~ 317 (836)
.+-+.++|..||.+-+..|++.|++.+...+ ++.++-+++++|..++++.|...|++++-.|+..
T Consensus 785 ~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl-~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~ 849 (1267)
T KOG0783|consen 785 SDFMFEILSIADQLLILELKSICEQSLLRKL-NLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEF 849 (1267)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh-cccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHH
Confidence 4568899999999999999999999998877 6788999999999999999999999999888744
No 108
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.22 E-value=1.1e-10 Score=125.37 Aligned_cols=280 Identities=15% Similarity=0.101 Sum_probs=191.3
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhc--------cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHh
Q 003249 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA--------GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER 455 (836)
Q Consensus 384 ~a~~~lG~~~~~~g~y~eAi~~f~~Al~l--------~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r 455 (836)
-.|.++|++|+-.++|++|+++-.--|.+ +.+-+--++|.+.-.+|.+++|+.+..+-+.....++.
T Consensus 56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgD----- 130 (639)
T KOG1130|consen 56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGD----- 130 (639)
T ss_pred HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhH-----
Confidence 36789999999999999998865533322 23334556777777777777777665544332211111
Q ss_pred hhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC-------------HHHHHHHHHHHHhc-------CCC----
Q 003249 456 SLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN-------------VEAALAEINRILGF-------KLA---- 511 (836)
Q Consensus 456 ~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~-------------~~eAi~~~~kai~l-------~P~---- 511 (836)
+. .-+.+++|+|++|...|+ -+++-+++..|+++ --.
T Consensus 131 --------------rv-----~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr 191 (639)
T KOG1130|consen 131 --------------RV-----LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDR 191 (639)
T ss_pred --------------HH-----hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 11 113567778888877776 23444444444432 211
Q ss_pred ---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccc
Q 003249 512 ---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 588 (836)
Q Consensus 512 ---~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 588 (836)
-.++-++|..|+-+|+|+.||...+.-|+|...|.. +|
T Consensus 192 ~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD----------------------rA----------------- 232 (639)
T KOG1130|consen 192 LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD----------------------RA----------------- 232 (639)
T ss_pred HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh----------------------HH-----------------
Confidence 134567788899999999999988877777443311 11
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR----QHAASD--HERLVYEGWILYDTSHCEEGLRKAE 662 (836)
Q Consensus 589 aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al----~l~P~~--~eal~~~G~il~~~G~~eeAl~~~~ 662 (836)
-+ -.+|-++|.++.-+|.++.|++.|.+++ ++.... +...|.+|..|.-+.++++||.+++
T Consensus 233 --------ae-----RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 233 --------AE-----RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred --------HH-----HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 01 1467788889999999999999987655 444444 4457999999999999999999999
Q ss_pred HHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-
Q 003249 663 ESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI- 741 (836)
Q Consensus 663 ~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l- 741 (836)
+-++|.+.-+ +.+..+.++..||++|..+|..++|+-.-.+++++
T Consensus 300 rHLaIAqeL~----------------------------------DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 300 RHLAIAQELE----------------------------------DRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHH----------------------------------HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9887643321 12223568899999999999999999999988876
Q ss_pred ---Cch----hHHhhHHHHHHhcCCHHHHHHHHHHHHHh
Q 003249 742 ---RHT----RAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (836)
Q Consensus 742 ---~~~----~A~~~la~~~~~~g~~~~A~~~~~kaie~ 773 (836)
+.+ .|..|+.......|+-+.-.++-+..|.-
T Consensus 346 ~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~te~~i~s 384 (639)
T KOG1130|consen 346 LEVNDTSGELTARDNLSDLILELGQEDSLVDDTELIIDS 384 (639)
T ss_pred HHhCCcchhhhhhhhhHHHHHHhCCCcccCCcHHHHhhc
Confidence 222 47888888888999877666666666643
No 109
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.22 E-value=1.1e-11 Score=130.26 Aligned_cols=230 Identities=11% Similarity=-0.021 Sum_probs=150.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 003249 482 YMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (836)
Q Consensus 482 y~~rg~~l~~~g~~~eAi~~~~kai~l~P-~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~ 560 (836)
..-+|+.|+.+|+|+|||.+|.++|.++| |+-.+.||+.+|+++.++..|..|++.|+.||..|..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA------------ 167 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA------------ 167 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH------------
Confidence 45678888888888888888888888888 45556678888888888888888888888887665433
Q ss_pred HHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 003249 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (836)
Q Consensus 561 l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~ea 640 (836)
|-+||.+...||..+||-.+++.++++.|+..|.
T Consensus 168 ----------------------------------------------YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 168 ----------------------------------------------YSRRMQARESLGNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred ----------------------------------------------HHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHH
Confidence 3444455556666667777777777777765543
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHH
Q 003249 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 719 (836)
Q Consensus 641 l~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG 719 (836)
--..+.+ .-.-|+ +-+++--|++ +|.-+. .+ .......|
T Consensus 202 kK~~a~i----~Sl~E~----~I~~KsT~G~~~A~Q~~---------------------~Q-----------~l~~K~~G 241 (536)
T KOG4648|consen 202 KKSLARI----NSLRER----KIATKSTPGFTPARQGM---------------------IQ-----------ILPIKKPG 241 (536)
T ss_pred HHHHHHh----cchHhh----hHHhhcCCCCCccccch---------------------hh-----------hccccCcc
Confidence 2222111 111111 1111111111 000000 00 01235678
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCchhHH--hhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHH
Q 003249 720 SVYVDCGQLDLAADCYSNALKIRHTRAH--QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELT 793 (836)
Q Consensus 720 ~~y~~~g~~deAi~~y~kAL~l~~~~A~--~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A 793 (836)
+.+...|+++.|+.||.+.+.-..+.+. .+ +..+.+..+++.|+.+.+++|-.+|....+...|+ -+|...+|
T Consensus 242 ~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~ 320 (536)
T KOG4648|consen 242 YKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEV 320 (536)
T ss_pred hhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhc
Confidence 8999999999999999998875433221 23 67788888888888888888888888777776663 24667888
Q ss_pred HHHHHHhHhcCCCCccc
Q 003249 794 RADLEMVTQLDPLRVYP 810 (836)
Q Consensus 794 ~~D~~~Ai~l~P~~~~~ 810 (836)
..|++.|+.+.|..-.|
T Consensus 321 K~~~~T~~~~~P~~~~~ 337 (536)
T KOG4648|consen 321 KPTKQTAVKVAPAVETP 337 (536)
T ss_pred Ccchhheeeeccccccc
Confidence 88888888888865544
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.21 E-value=8.2e-10 Score=113.98 Aligned_cols=123 Identities=23% Similarity=0.141 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL 681 (836)
.+..+...+|....+.|++.+|+..+++|.+++|+|+++|..+|.+|.+.|++++|-..|.+|+++.|+.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---------- 167 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE---------- 167 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC----------
Confidence 3333333445555555555555555555555555555555555555555555555555555555554433
Q ss_pred hccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC--CchhHHhhHHHHHHhcCC
Q 003249 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHTRAHQGLARVHFLKNN 759 (836)
Q Consensus 682 ~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l--~~~~A~~~la~~~~~~g~ 759 (836)
+.+.+|+|..|.-.|+++.|...+..|... .+.....|++.+.-..|+
T Consensus 168 ------------------------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 168 ------------------------------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred ------------------------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 234555555555555555555555555443 233455555555555555
Q ss_pred HHHHH
Q 003249 760 KTTAY 764 (836)
Q Consensus 760 ~~~A~ 764 (836)
+++|-
T Consensus 218 ~~~A~ 222 (257)
T COG5010 218 FREAE 222 (257)
T ss_pred hHHHH
Confidence 55553
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.20 E-value=1.2e-09 Score=112.90 Aligned_cols=181 Identities=15% Similarity=0.011 Sum_probs=154.2
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
..+...+-+....+|++... .+++..+...|+-+.+.....++..-.|.. ..+...|...+..|+|.+|+..++++.+
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 34666678889999999999 999999999999999999999988888864 5555689999999999999999999988
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~ 620 (836)
++|++ +.+|..+|.+|.++|+.
T Consensus 129 l~p~d----------------------------------------------------------~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 129 LAPTD----------------------------------------------------------WEAWNLLGAALDQLGRF 150 (257)
T ss_pred cCCCC----------------------------------------------------------hhhhhHHHHHHHHccCh
Confidence 87765 56778889999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHH
Q 003249 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLED 700 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~ 700 (836)
++|-..|.+|+++.|+++.+..|+|..++-.|+++.|...+..+....+..
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad----------------------------- 201 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD----------------------------- 201 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-----------------------------
Confidence 999999999999999999999999999999999999988877776432221
Q ss_pred HhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 701 ALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 701 Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
..+-.|+..+...+|++++|...-.+=+..
T Consensus 202 -----------~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 202 -----------SRVRQNLALVVGLQGDFREAEDIAVQELLS 231 (257)
T ss_pred -----------hHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence 246789999999999999998776655444
No 112
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.19 E-value=1.4e-09 Score=108.73 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=83.8
Q ss_pred chHHHHHhhhcC----ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHH
Q 003249 448 LGWMYQERSLYC----EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFF 522 (836)
Q Consensus 448 ~~~ay~~r~~~~----~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~ 522 (836)
.+.++.+||.++ ...-|.-||++++.+.|+.+.+++++|.-+...|+|+.|.+.|+..+++||.+ .+..|||..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 566777777543 33667789999999999999999999999999999999999999999999975 5667899988
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCch
Q 003249 523 LALEDYQAALCDVQAILTLSPDYR 546 (836)
Q Consensus 523 ~~lg~~~~Ai~d~~~al~l~P~~~ 546 (836)
.--|+|+-|.+|+.+--+-||+++
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCCh
Confidence 888999999999998888888875
No 113
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=4.4e-08 Score=110.38 Aligned_cols=305 Identities=16% Similarity=0.130 Sum_probs=194.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH
Q 003249 483 MYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (836)
Q Consensus 483 ~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l 561 (836)
+.++-+.+++++.++|+.+++ .+++.+ ...+.+|.+++++|+|++|+.-|+..++-+-+......+.... ...
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~---a~~ 156 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLL---AVA 156 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHH---HHH
Confidence 678889999999999999999 567764 4788899999999999999999999998877664432221110 000
Q ss_pred HHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Q 003249 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP-KGVLYFRQSLLLLRLNCPEAAMRSLQLARQH------- 633 (836)
Q Consensus 562 ~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~-~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l------- 633 (836)
.-..++ +.+.....|. .-+.+||.+-++...|+|.+|++.+++|.++
T Consensus 157 -----a~l~~~--------------------~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~ 211 (652)
T KOG2376|consen 157 -----AALQVQ--------------------LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLED 211 (652)
T ss_pred -----HhhhHH--------------------HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc
Confidence 000000 2233333444 5678999999999999999999999999432
Q ss_pred -CCC--C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHH----HHHHHHHhhc-cc---------------
Q 003249 634 -AAS--D-----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA----FFLKAYALAD-SS--------------- 685 (836)
Q Consensus 634 -~P~--~-----~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a----~~~~a~aL~~-~~--------------- 685 (836)
+.+ + .-+.+.++.|+..+|+-+||.+.|...|+.+|-++. +-|...++.. ..
T Consensus 212 ~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~ 291 (652)
T KOG2376|consen 212 EDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVF 291 (652)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHH
Confidence 111 1 225678999999999999999999999988864431 1111111100 00
Q ss_pred -----------------------------------------cCCCChhHHHHH-HHH---------------HhcCCccc
Q 003249 686 -----------------------------------------QDSSCSSTVVSL-LED---------------ALKCPSDR 708 (836)
Q Consensus 686 -----------------------------------------l~~~~~~~~i~~-l~~---------------Al~~~~~~ 708 (836)
+.+..+...+.. +.+ ...+....
T Consensus 292 ~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~ 371 (652)
T KOG2376|consen 292 KLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH 371 (652)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC
Confidence 111111111110 000 11111112
Q ss_pred cch-HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHcCCchhHHhhHHH-HHHhcCCHHHHHHHHHHHHHhcCCC-
Q 003249 709 LRK-GQALNNLGSVYVDCGQLDLAADCYS--------NALKIRHTRAHQGLAR-VHFLKNNKTTAYEEMTKLIKKARNN- 777 (836)
Q Consensus 709 ~~~-~~a~~nlG~~y~~~g~~deAi~~y~--------kAL~l~~~~A~~~la~-~~~~~g~~~~A~~~~~kaie~~p~~- 777 (836)
+.+ .....-+.......|+++.|++.+. .-+++++..+..+... +++..++.+.|.+.+.+||.--.++
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 211 3456677778889999999999999 6666666554444444 5566666666777777777321111
Q ss_pred --HHHH---------HHHHHccCHHHHHHHHHHhHhcCCCCcccchhhHHHHH
Q 003249 778 --ASAY---------EKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLI 819 (836)
Q Consensus 778 --a~Ay---------~~r~~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~ 819 (836)
..+. ++ -..|.-++|+.++++-++.+|+++...-.+=.++-
T Consensus 452 t~s~~l~~~~~~aa~f~-lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFK-LRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYA 503 (652)
T ss_pred ccchHHHhHHHHHhHHH-HhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 0111 11 12388999999999999999999887666555544
No 114
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.15 E-value=3.6e-10 Score=109.57 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=98.4
Q ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHH
Q 003249 597 LESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 675 (836)
Q Consensus 597 l~~~-P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~ 675 (836)
..++ ++.-+..|..|..+...|++++|...|+.+..++|.++..|+++|.++..+|+|++||+.|.+|+.++|++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd---- 102 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA---- 102 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----
Confidence 3456 67778899999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 676 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 676 ~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+.++.|.|.+|...|+.+.|..+|+.||..
T Consensus 103 ------------------------------------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 103 ------------------------------------PQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred ------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999997
No 115
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.15 E-value=4e-11 Score=126.20 Aligned_cols=206 Identities=11% Similarity=0.014 Sum_probs=157.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHH
Q 003249 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (836)
Q Consensus 515 ~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~ 594 (836)
+-.+|.-|+++|+|++||.||.+++.++|-+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N------------------------------------------------- 130 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN------------------------------------------------- 130 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCC-------------------------------------------------
Confidence 3458999999999999999999999988755
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHH
Q 003249 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (836)
Q Consensus 595 ~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~ 674 (836)
+..|.||+++|++++++..|..+.+.|+.++-.+..||..||.+...+|...||-++|+.+|+|.|..-.
T Consensus 131 ---------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E- 200 (536)
T KOG4648|consen 131 ---------PVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIE- 200 (536)
T ss_pred ---------ccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH-
Confidence 3456788899999999999999999999999999999999999999999999999999999999998611
Q ss_pred HHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCchhHHhhHHHH
Q 003249 675 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKIRHTRAHQGLARV 753 (836)
Q Consensus 675 ~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~-g~~deAi~~y~kAL~l~~~~A~~~la~~ 753 (836)
|... -.++.. + ...-.+-... | +-+|..--.++|.++.. |..
T Consensus 201 ------LkK~--------------~a~i~S----l------~E~~I~~KsT~G-~~~A~Q~~~Q~l~~K~~------G~~ 243 (536)
T KOG4648|consen 201 ------LKKS--------------LARINS----L------RERKIATKSTPG-FTPARQGMIQILPIKKP------GYK 243 (536)
T ss_pred ------HHHH--------------HHHhcc----h------HhhhHHhhcCCC-CCccccchhhhccccCc------chh
Confidence 1000 000100 0 0000011111 2 33455555566665432 556
Q ss_pred HHhcCCHHHHHHHHHHHHH------hcCCCHHHHHHHHHccCHHHHHHHHHHhHhcCCCCcccchhhHHHHH
Q 003249 754 HFLKNNKTTAYEEMTKLIK------KARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLI 819 (836)
Q Consensus 754 ~~~~g~~~~A~~~~~kaie------~~p~~a~Ay~~r~~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~ 819 (836)
..+.|++..++.+|+.-+. .-|-++.+|.+--.+ +.|+.|+.++|-++|.+..+...||.+--
T Consensus 244 Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~---~~~~~~~~~~~~~~~s~~~~~s~~~~A~T 312 (536)
T KOG4648|consen 244 FSKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNS---NCGIIEEVKKTNPKPTPMPDTSGPPKAET 312 (536)
T ss_pred hhhhhccccceeEeeccccccCccccCcccHHHHHHHhhc---chhHHHHHHhcCCCCCcCcccCCCchhHH
Confidence 7788999999999988663 336668888887666 89999999999999999999999987644
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.14 E-value=3.6e-09 Score=127.85 Aligned_cols=237 Identities=8% Similarity=-0.104 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh
Q 003249 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (836)
Q Consensus 380 ~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~ 457 (836)
+....++-.+...+...|++++|+...+.+++..|. ..+..+|.+++..+++..+... .++.+.+...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~-------- 97 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL-------- 97 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc--------
Confidence 345678888999999999999999999999988665 4677888899999986666544 4443332211
Q ss_pred cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 458 ~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
...+++++-+.+...|.+-.+++.+|.+|-.+|+.++|++.|+++|+++|+ +.++++.|..|... +.++|++.+.
T Consensus 98 ---~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 ---KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred ---chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 025666777788888999999999999999999999999999999999996 68899999999999 9999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003249 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (836)
Q Consensus 537 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~ 616 (836)
+|++..=+. +++..+ +..+.+.++.+|.+....+..=.....
T Consensus 174 KAV~~~i~~--------------------kq~~~~------------------~e~W~k~~~~~~~d~d~f~~i~~ki~~ 215 (906)
T PRK14720 174 KAIYRFIKK--------------------KQYVGI------------------EEIWSKLVHYNSDDFDFFLRIERKVLG 215 (906)
T ss_pred HHHHHHHhh--------------------hcchHH------------------HHHHHHHHhcCcccchHHHHHHHHHHh
Confidence 999872211 122222 334455666777766554322221111
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhh
Q 003249 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALA 682 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~ 682 (836)
.-.... -++.+.-+=.-|.+.++|++++..++.+|+++|.+ .+++..+..+.
T Consensus 216 ~~~~~~--------------~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTR--------------LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhccch--------------hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 100111 12233333355678899999999999999999876 56555544443
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=7.9e-10 Score=126.77 Aligned_cols=215 Identities=18% Similarity=0.073 Sum_probs=175.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHHH
Q 003249 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWED 467 (836)
Q Consensus 388 ~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d 467 (836)
.++..+...|-...|+..|++- ..|.++..+|...|+..+|.....+-++ .|+.+..|..+|.. -.--..
T Consensus 403 ~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv---~~d~s~ 472 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV---LHDPSL 472 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh---ccChHH
Confidence 4677778888888888888643 4677788888889988888777767777 77888888888754 122234
Q ss_pred HHHHHhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 468 LDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 468 ~~kAi~ldP-~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
|++|.++.- .++.|.+++|......++|++|...++..++++|- .+.|+.+|.+..++++++.|..+|.+.++++|++
T Consensus 473 yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 473 YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 777777643 45667788888888889999999999999999994 7889999999999999999999999988888876
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003249 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (836)
Q Consensus 546 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~ 625 (836)
+++|.|.+.+|.++++-.+|-.
T Consensus 553 ----------------------------------------------------------~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 553 ----------------------------------------------------------AEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred ----------------------------------------------------------hhhhhhhhHHHHHHhhhHHHHH
Confidence 4566677778888888999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 626 SLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 626 ~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
.+..|++-+-++...|-|--.+..+.|.+++|++.|.+-+.+...
T Consensus 575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999887643
No 118
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.13 E-value=7.2e-10 Score=124.05 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 003249 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (836)
Q Consensus 482 y~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~ 560 (836)
+...|..++..|++++|+..|++||+++|+ +.++++||.+|..+|++++|+.++++|+.++|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--------------- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--------------- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence 456677888888888888888888888886 5677788888888888888888888888887765
Q ss_pred HHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 003249 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (836)
Q Consensus 561 l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~ea 640 (836)
+.+|+++|.++..+|++++|+..|+++++++|+++++
T Consensus 70 -------------------------------------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 70 -------------------------------------------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3456777788888888888888888888888888888
Q ss_pred HHHHHHHHHhc
Q 003249 641 LVYEGWILYDT 651 (836)
Q Consensus 641 l~~~G~il~~~ 651 (836)
...++.+...+
T Consensus 107 ~~~l~~~~~kl 117 (356)
T PLN03088 107 TKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHH
Confidence 88877775554
No 119
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.10 E-value=2.2e-07 Score=100.91 Aligned_cols=285 Identities=17% Similarity=0.178 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh
Q 003249 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (836)
Q Consensus 380 ~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~--~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~ 457 (836)
+.++...-+-|...+.-|+|..|+....++-+-.+ .-++..-+++-.++|+.+.|-.+
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~y-------------------- 140 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRY-------------------- 140 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHH--------------------
Confidence 34566777889999999999999998888766543 33445556666667765554444
Q ss_pred cCChhhHHHHHHHHHhcCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 003249 458 YCEGDKRWEDLDKATALDPTL-SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV 535 (836)
Q Consensus 458 ~~~~~eAi~d~~kAi~ldP~~-~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~ 535 (836)
+.+|.++.|+. ...+..|+.++...|+++.|.+...++++..|. +..+...-.+|...|++.+.....
T Consensus 141 ----------L~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l 210 (400)
T COG3071 141 ----------LAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAIL 210 (400)
T ss_pred ----------HHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHH
Confidence 67777774443 345778888899999999999999999999996 566666778899999988888776
Q ss_pred HHHHhhCC---CchhhhhhHHHHHHHHHHHHHhhhHhHH---HHHHhhhhccCc---------------ccccchHHHHH
Q 003249 536 QAILTLSP---DYRMFEGRVAASQLHMLVREHIDNWTIA---DCWLQLYDRWSS---------------VDDIGSLSVIY 594 (836)
Q Consensus 536 ~~al~l~P---~~~~~~~~~~~~~~~~~l~~~~~~~~~a---~~~~~~~~~~~~---------------~~~~~aL~~~~ 594 (836)
.+.-+-.- ....-+-+.+ ..+.+.+....-... ++|.++-..... .+..++-..+.
T Consensus 211 ~~L~ka~~l~~~e~~~le~~a---~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 211 PKLRKAGLLSDEEAARLEQQA---WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHccCCChHHHHHHHHHH---HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 65554332 2111111111 122222222211111 123222111000 00011222333
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHH
Q 003249 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (836)
Q Consensus 595 ~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~ 674 (836)
+++...-+.. ..+=.-..+.++++.=+...++.++..|++|..+..+|..+++.+.|.+|-..++.||+.+|+.
T Consensus 288 ~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--- 361 (400)
T COG3071 288 DALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA--- 361 (400)
T ss_pred HHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh---
Confidence 3333321111 1111122356667777777888888899999999999999999999999999999999887765
Q ss_pred HHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 675 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 675 ~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
..++-+|.++.++|+..+|-++++++|-+
T Consensus 362 --------------------------------------~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 362 --------------------------------------SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred --------------------------------------hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 35778899999999999999999999854
No 120
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.09 E-value=3e-09 Score=106.68 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
..++++|..+...|++++|+..|++++++.|+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------------------- 69 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---------------------------------------------- 69 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc----------------------------------------------
Confidence 3456677777777777777777777777766531
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai 665 (836)
+.+.+++++|.++.++|++++|+..+++++++.|+++.++..+|.++..+|+.+.|...+++|+
T Consensus 70 ---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~ 133 (172)
T PRK02603 70 ---------DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE 133 (172)
T ss_pred ---------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH
Confidence 1134566777777777777777777777777777777777777888777777655544444433
No 121
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.09 E-value=2.1e-09 Score=125.24 Aligned_cols=145 Identities=10% Similarity=0.049 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHH
Q 003249 515 LELRFCFFLALED---YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (836)
Q Consensus 515 ~~~rg~~~~~lg~---~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~ 591 (836)
++.||.-+...++ .+.|++.|++|++++|+|+.++..++..+....-... .+.. .+ ..+..
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~---~~~~-~l------------~~a~~ 405 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP---LDEK-QL------------AALST 405 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC---ccHH-HH------------HHHHH
Confidence 3446666655444 7788888888888888887666554332211110000 0000 00 01123
Q ss_pred HHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 003249 592 VIYQMLE--SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (836)
Q Consensus 592 ~~~~al~--~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p 669 (836)
...+++. .+|.++.+|.-+|+.....|++++|.+.+++|+.++| ++.+|+.+|.++...|++++|++.|++|+.++|
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3445555 4788899999999999999999999999999999999 589999999999999999999999999999999
Q ss_pred chHHHHH
Q 003249 670 SFEAFFL 676 (836)
Q Consensus 670 ~~~a~~~ 676 (836)
.++.||+
T Consensus 485 ~~pt~~~ 491 (517)
T PRK10153 485 GENTLYW 491 (517)
T ss_pred CCchHHH
Confidence 9876654
No 122
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=3.8e-07 Score=102.99 Aligned_cols=365 Identities=12% Similarity=0.040 Sum_probs=220.4
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHH
Q 003249 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWE 466 (836)
Q Consensus 387 ~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~ 466 (836)
+..+.+.+..++.++|+.+++ .+...+.....-.|.+.+++|++++|+..|...+.-+.+.-..-..-+..... .+..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-a~l~ 160 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-AALQ 160 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-Hhhh
Confidence 456777889999999999998 33333444667778999999999999999998877665443333322222111 1111
Q ss_pred -HHHHHHhcCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CChH--------HHHHHHHHHHhcCCH
Q 003249 467 -DLDKATALDPT-LSYPYMYRASSLMTKQNVEAALAEINRILGFK--------LALE--------CLELRFCFFLALEDY 528 (836)
Q Consensus 467 -d~~kAi~ldP~-~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~--------P~~~--------~~~~rg~~~~~lg~~ 528 (836)
...+.....|+ ..+-++|.+.++...|+|.+||+.+.+|+.+- -+.+ ....++.++..+|+.
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 14555566665 55678999999999999999999999994421 1111 123467889999999
Q ss_pred HHHHHHHHHHHhhCCCchhhh----hhHHHHH-------------------------HHHHHHHHhhhHhHHHHHHhhhh
Q 003249 529 QAALCDVQAILTLSPDYRMFE----GRVAASQ-------------------------LHMLVREHIDNWTIADCWLQLYD 579 (836)
Q Consensus 529 ~~Ai~d~~~al~l~P~~~~~~----~~~~~~~-------------------------~~~~l~~~~~~~~~a~~~~~~~~ 579 (836)
++|...|...|+.+|-+.... +++-+.. +..+...+.++..+-.++..++.
T Consensus 241 ~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999875322 1111000 00011111111111111111111
Q ss_pred ccCcccccchHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCH
Q 003249 580 RWSSVDDIGSLSVIYQMLESDAPKG----VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTSHC 654 (836)
Q Consensus 580 ~~~~~~~~~aL~~~~~al~~~P~~~----~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~-~eal~~~G~il~~~G~~ 654 (836)
. .-...++.....|... .--..+...+.+-+.+.+|.+.+..--.-.|.. ..+...+..+..-+|++
T Consensus 321 n--------k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 321 N--------KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred h--------hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 0 1111222222333333 222233334444447889999999999999988 77889999999999999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCC-------
Q 003249 655 EEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ------- 727 (836)
Q Consensus 655 eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~------- 727 (836)
+.|++.+...++...+. +.+.+..|+- -..+-..|..-+.
T Consensus 393 ~~A~~il~~~~~~~~ss---------~~~~~~~P~~------------------------V~aiv~l~~~~~~~~~a~~v 439 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSS---------ILEAKHLPGT------------------------VGAIVALYYKIKDNDSASAV 439 (652)
T ss_pred HHHHHHHHHHhhhhhhh---------hhhhccChhH------------------------HHHHHHHHHhccCCccHHHH
Confidence 99999888554211100 0000111111 1111111222222
Q ss_pred HHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH-HHc--cCHHHHH
Q 003249 728 LDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR-SEY--CDRELTR 794 (836)
Q Consensus 728 ~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r-~~~--~~~~~A~ 794 (836)
+++|+..|++...-.. .....-.+....+.|+-++|...+.+.++.+|++..+...+ +.| -|.+.|.
T Consensus 440 l~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~ 511 (652)
T KOG2376|consen 440 LDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAE 511 (652)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHH
Confidence 4555555555543222 12344556677788999999999999999999999999888 333 3555554
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.08 E-value=1.6e-09 Score=105.02 Aligned_cols=107 Identities=12% Similarity=0.030 Sum_probs=98.4
Q ss_pred HHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCc
Q 003249 628 QLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (836)
Q Consensus 628 ~~Al~l~-P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~ 706 (836)
.....+. +++-+.+|..|..++..|++++|.+.|+-...++|.+
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~----------------------------------- 68 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS----------------------------------- 68 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----------------------------------
Confidence 4456788 8999999999999999999999999999999998887
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhc
Q 003249 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (836)
Q Consensus 707 ~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~~~~A~~~~~kaie~~ 774 (836)
.+-|.|||.++..+|+|++||++|.+|+.++| .+++++.|.+++..|+.+.|.+.|..||...
T Consensus 69 -----~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 69 -----FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999998864 5899999999999999999999999999876
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.08 E-value=1.2e-09 Score=122.30 Aligned_cols=107 Identities=10% Similarity=0.042 Sum_probs=93.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhcccc
Q 003249 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 686 (836)
Q Consensus 607 ~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l 686 (836)
+..+|..+...|++++|++.|++|++++|+++.+|+++|.++..+|++++|+.++++||+++|++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--------------- 69 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL--------------- 69 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------
Confidence 45678888899999999999999999999999999999999999999999999999999988866
Q ss_pred CCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHH
Q 003249 687 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARV 753 (836)
Q Consensus 687 ~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~ 753 (836)
+.+|+++|.+|..+|+|++|+.+|++|++++|. .++..++.+
T Consensus 70 -------------------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 70 -------------------------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred -------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999765 344444443
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2.2e-08 Score=102.63 Aligned_cols=184 Identities=20% Similarity=0.165 Sum_probs=148.1
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 003249 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (836)
Q Consensus 473 ~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~ 551 (836)
.+.|+....|-....+..+.|+.+-|-..+++.-.--|+ +...-.-|..+...|.|++|++.|+..|+-||.+.
T Consensus 46 ~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~----- 120 (289)
T KOG3060|consen 46 ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT----- 120 (289)
T ss_pred ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh-----
Confidence 456666667777778888899999999999986665575 56556668888899999999988888888777663
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003249 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (836)
Q Consensus 552 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al 631 (836)
..|.++-.++..+|+.-+|++.++.-+
T Consensus 121 -----------------------------------------------------v~~KRKlAilka~GK~l~aIk~ln~YL 147 (289)
T KOG3060|consen 121 -----------------------------------------------------VIRKRKLAILKAQGKNLEAIKELNEYL 147 (289)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 334445556677888889999999999
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccch
Q 003249 632 QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRK 711 (836)
Q Consensus 632 ~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~ 711 (836)
+..++|+|+|..++.+|...|+|++|.-+|++.+=++|-++.+|.+-
T Consensus 148 ~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rl--------------------------------- 194 (289)
T KOG3060|consen 148 DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRL--------------------------------- 194 (289)
T ss_pred HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999998777652
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHH
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLA 751 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la 751 (836)
++.++..|- ..+++-|...|.+|+++++. ++.+|+-
T Consensus 195 ae~~Yt~gg----~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 195 AEVLYTQGG----AENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHhh----HHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 345555554 45899999999999999874 4555543
No 126
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.06 E-value=4.5e-10 Score=94.53 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhccc
Q 003249 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-HCEEGLRKAEESIQMKR 669 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G-~~eeAl~~~~~Ai~l~p 669 (836)
++..|+++|.++...|++++|+..|+++++++|+++.+|+++|.++..+| ++++|+++|++||+++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57899999999999999999999999999999999999999999999999 79999999999999987
No 127
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.06 E-value=3.2e-09 Score=115.16 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHHHHc--CC----CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCCh
Q 003249 619 CPEAAMRSLQLARQH--AA----SDHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCS 691 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l--~P----~~~eal~~~G~il~~~-G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~ 691 (836)
++++|++.|++|+++ .. .-+..+..+|.+|.+. |++++|++.|++|+++-....
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~------------------- 149 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG------------------- 149 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-------------------
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-------------------
Confidence 566666666666654 11 1145678889999998 999999999999997632210
Q ss_pred hHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC--Cc------h-hHHhhHHHHHHhcCCHHH
Q 003249 692 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RH------T-RAHQGLARVHFLKNNKTT 762 (836)
Q Consensus 692 ~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l--~~------~-~A~~~la~~~~~~g~~~~ 762 (836)
........+.+.|.++..+|+|++|++.|++.... +. . ..+...+.+++..|+.-.
T Consensus 150 ---------------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~ 214 (282)
T PF14938_consen 150 ---------------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVA 214 (282)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHH
T ss_pred ---------------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHH
Confidence 00011467889999999999999999999999864 21 1 234567779999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH-----------HHccCHHHHHHHHHHhHhcCCCC
Q 003249 763 AYEEMTKLIKKARNNASAYEKR-----------SEYCDRELTRADLEMVTQLDPLR 807 (836)
Q Consensus 763 A~~~~~kaie~~p~~a~Ay~~r-----------~~~~~~~~A~~D~~~Ai~l~P~~ 807 (836)
|...+++..+.+|.....-+.+ +..-.++.|+.+|++-.+|||=-
T Consensus 215 A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 215 ARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp HHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHH
T ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHH
Confidence 9999999999999876654443 12235899999999999999843
No 128
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.05 E-value=5.8e-10 Score=93.85 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=63.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 003249 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSP 543 (836)
Q Consensus 477 ~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg-~~~~Ai~d~~~al~l~P 543 (836)
+++..|..+|.++...|++++|+..|+++|+++|+ +.+++++|.++..+| ++++|+.+|+++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999999998 578999999999999 79999999999999999
No 129
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.05 E-value=1.6e-09 Score=108.54 Aligned_cols=120 Identities=19% Similarity=0.192 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHH
Q 003249 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 676 (836)
Q Consensus 600 ~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~ 676 (836)
+|..+.+++++|..+...|++++|+..|++++++.|+. +.+++++|.++..+|++++|+..|++++++.|+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 105 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----- 105 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----
Confidence 45677888999999999999999999999999887764 4688999999999999999999999999876654
Q ss_pred HHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHHHHh
Q 003249 677 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFL 756 (836)
Q Consensus 677 ~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~ 756 (836)
..++.++|.+|...|+...|...+.+|+..
T Consensus 106 -----------------------------------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~--------------- 135 (172)
T PRK02603 106 -----------------------------------PSALNNIAVIYHKRGEKAEEAGDQDEAEAL--------------- 135 (172)
T ss_pred -----------------------------------HHHHHHHHHHHHHcCChHhHhhCHHHHHHH---------------
Confidence 345667777777777777666666665432
Q ss_pred cCCHHHHHHHHHHHHHhcCCC
Q 003249 757 KNNKTTAYEEMTKLIKKARNN 777 (836)
Q Consensus 757 ~g~~~~A~~~~~kaie~~p~~ 777 (836)
+++|++.++++++.+|++
T Consensus 136 ---~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 136 ---FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ---HHHHHHHHHHHHhhCchh
Confidence 466777777788887776
No 130
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=8.3e-08 Score=120.60 Aligned_cols=275 Identities=17% Similarity=0.036 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccch-------hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchH-----
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW----- 450 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~-------~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~----- 450 (836)
+.....+|.++...|++++|...++++++..+. .+...+|.++...|++++|...+.+++......+.
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 344556788889999999999999998874211 23456677788888888888888777654322111
Q ss_pred -HHHHhhh----cCChhhHHHHHHHHHhcCC--------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C--
Q 003249 451 -MYQERSL----YCEGDKRWEDLDKATALDP--------TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL----A-- 511 (836)
Q Consensus 451 -ay~~r~~----~~~~~eAi~d~~kAi~ldP--------~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P----~-- 511 (836)
++...+. .|+.++|...+++++.+-. .....+..+|.++...|++++|...+.+++.+.. .
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 1111110 1222455555555444311 1122334455555555555555555555554321 1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHH
Q 003249 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (836)
Q Consensus 512 ~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~ 591 (836)
..++..+|.++...|++++|.+.+++++.+.+.... ..
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~-~~----------------------------------------- 649 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY-HS----------------------------------------- 649 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc-cH-----------------------------------------
Confidence 122333455555555555555555555544322100 00
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE----RLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e----al~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
+............+...|+.++|.+.+.......+.... .+..+|.++..+|++++|+..+++++..
T Consensus 650 ---------~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 650 ---------DWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred ---------hHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 000000011223445578888888888776654433322 2568999999999999999999999975
Q ss_pred ccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003249 668 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (836)
Q Consensus 668 ~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~ 742 (836)
..... .......++..+|.+|..+|+.++|.+.+.+|+++.
T Consensus 721 ~~~~g----------------------------------~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 721 ARSLR----------------------------------LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHhC----------------------------------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 32110 001114578889999999999999999999999984
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.02 E-value=1.2e-08 Score=117.39 Aligned_cols=220 Identities=16% Similarity=0.080 Sum_probs=145.6
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 003249 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (836)
Q Consensus 476 P~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~ 555 (836)
|.....-.-+|.++...|-..+|+..|.+.= .|-....+|..+|+..+|-.-..+-++ +|+.+..|--++
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG-- 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG-- 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh--
Confidence 3344555678889999999999999988863 344456778888999999998889998 444443332211
Q ss_pred HHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003249 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (836)
Q Consensus 556 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~-P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~ 634 (836)
.+ ...-..|.+++++. -.++.+....|....+.+++++|.++++..++++
T Consensus 465 ----Dv-------------------------~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n 515 (777)
T KOG1128|consen 465 ----DV-------------------------LHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN 515 (777)
T ss_pred ----hh-------------------------ccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC
Confidence 11 11244556666653 2345555666666777888999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHH
Q 003249 635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 713 (836)
Q Consensus 635 P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~ 713 (836)
|-..+.|+.+|.+..++++++.|.++|.+.+.++|+. ++|.+.+.++-..+ ....+...+.+|++|.-+. ..
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~----~k~ra~~~l~EAlKcn~~~---w~ 588 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK----KKKRAFRKLKEALKCNYQH---WQ 588 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh----hhHHHHHHHHHHhhcCCCC---Ce
Confidence 9999999999999999999999999999999888876 44444333322111 2222333445555555333 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.|-|--.+-.+.|.+++|+.+|.+-+.+
T Consensus 589 iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 589 IWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred eeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 5555556666666666666666666555
No 132
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.01 E-value=7.4e-09 Score=103.31 Aligned_cols=118 Identities=12% Similarity=-0.021 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhH
Q 003249 494 NVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTI 570 (836)
Q Consensus 494 ~~~eAi~~~~kai~l~P~---~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~ 570 (836)
.+..+...+.+.++.++. ...+++.|.++..+|++++|+..|++++.+.|+..
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------------------ 69 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------------------ 69 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------------------
Confidence 355666666666666663 24567788999999999999999999998877541
Q ss_pred HHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-
Q 003249 571 ADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY- 649 (836)
Q Consensus 571 a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~- 649 (836)
..+.+|+++|.++...|++++|+..+++|++++|..++++.++|.++.
T Consensus 70 -------------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 70 -------------------------------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred -------------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 124577888999999999999999999999999999999999999999
Q ss_pred ------hcCCHHHHHHHHHHHHh
Q 003249 650 ------DTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 650 ------~~G~~eeAl~~~~~Ai~ 666 (836)
.+|++++|+..|++|+.
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHH
Confidence 88888877777777764
No 133
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.00 E-value=7e-09 Score=103.50 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH-HHHHHH
Q 003249 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKA 678 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~-a~~~~a 678 (836)
.+..|++.|.++...|++++|+..|++++.+.|+. +.++.++|.++..+|++++|+..|++|++++|... ++++.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l- 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM- 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH-
Confidence 46788999999999999999999999999998763 46999999999999999999999999999987762 11111
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
+.++.++|..+..+|++++|+..|.+|++
T Consensus 113 ---------------------------------a~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 113 ---------------------------------AVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred ---------------------------------HHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 23455555555577777776666655543
No 134
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.99 E-value=6.6e-07 Score=88.76 Aligned_cols=218 Identities=25% Similarity=0.252 Sum_probs=162.5
Q ss_pred hhHHHHHHHHHhcCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPT--LSYPYMYRASSLMTKQNVEAALAEINRILG--FKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~--~~~ay~~rg~~l~~~g~~~eAi~~~~kai~--l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
..+...+..++...+. ....+...+..+...+++..++..+..++. ..+. ...+...|..+...+++++|+..+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555667777777776 477888888888889999999998888886 5555 4566677888888888888888888
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHH-HHH
Q 003249 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL-LLL 615 (836)
Q Consensus 537 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl-~l~ 615 (836)
+++..+|+.... +...+. ++.
T Consensus 120 ~~~~~~~~~~~~----------------------------------------------------------~~~~~~~~~~ 141 (291)
T COG0457 120 KALALDPDPDLA----------------------------------------------------------EALLALGALY 141 (291)
T ss_pred HHHcCCCCcchH----------------------------------------------------------HHHHHHHHHH
Confidence 888887765110 001111 567
Q ss_pred HcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChh
Q 003249 616 RLNCPEAAMRSLQLARQHAA---SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (836)
Q Consensus 616 ~l~~~~eAl~~~~~Al~l~P---~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~ 692 (836)
..+++++|+..+.+++..+| .....+..++..+...|++++|+..+.+++...+..
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------- 200 (291)
T COG0457 142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD--------------------- 200 (291)
T ss_pred HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc---------------------
Confidence 78888888888888888776 466677777777888888888888888888765432
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHH
Q 003249 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 770 (836)
Q Consensus 693 ~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~ka 770 (836)
...++.++|..+...+++++|+..+.+++...+. .....++..+...|..+++...+.++
T Consensus 201 ------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 201 ------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred ------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 1346777888888888888888888888887664 55666777666667788888888888
Q ss_pred HHhcCC
Q 003249 771 IKKARN 776 (836)
Q Consensus 771 ie~~p~ 776 (836)
++.+|+
T Consensus 263 ~~~~~~ 268 (291)
T COG0457 263 LELDPD 268 (291)
T ss_pred HHhCcc
Confidence 888886
No 135
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.97 E-value=9.5e-07 Score=87.61 Aligned_cols=222 Identities=23% Similarity=0.180 Sum_probs=177.9
Q ss_pred cCCHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhH
Q 003249 492 KQNVEAALAEINRILGFKLA---LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNW 568 (836)
Q Consensus 492 ~g~~~eAi~~~~kai~l~P~---~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~ 568 (836)
.+.+..++..+..++...+. .......+..+...+++..++..+..++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 88 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL--------------------------- 88 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh---------------------------
Confidence 57778888888888888775 355666778888888888888877777653
Q ss_pred hHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH-H
Q 003249 569 TIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW-I 647 (836)
Q Consensus 569 ~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~-i 647 (836)
...+.....++..|......+.+++|+..+.+++...+.+.......+. +
T Consensus 89 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 89 -----------------------------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred -----------------------------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 0123445566677777788888999999999999999988777777777 8
Q ss_pred HHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCC
Q 003249 648 LYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ 727 (836)
Q Consensus 648 l~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~ 727 (836)
+...|++++|+..|++++.+.|.. ......+..++..+...++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~ 182 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPEL-------------------------------------NELAEALLALGALLEALGR 182 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCc-------------------------------------cchHHHHHHhhhHHHHhcC
Confidence 999999999999999998765530 0013456666777899999
Q ss_pred HHHHHHHHHHHHcCCch---hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHh
Q 003249 728 LDLAADCYSNALKIRHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMV 800 (836)
Q Consensus 728 ~deAi~~y~kAL~l~~~---~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~A 800 (836)
+++|+..+.+++...+. .+..+++..+...|+++.|+..+.++++..|+.+..+..++ ..++.+.|...+.++
T Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999998554 67899999999999999999999999999999655555543 346789999999999
Q ss_pred HhcCCC
Q 003249 801 TQLDPL 806 (836)
Q Consensus 801 i~l~P~ 806 (836)
++.+|.
T Consensus 263 ~~~~~~ 268 (291)
T COG0457 263 LELDPD 268 (291)
T ss_pred HHhCcc
Confidence 999998
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.96 E-value=1.3e-08 Score=94.19 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLAL----ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 480 ~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~----~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
..++.+|..+..+|++++|+..|+++++.+|+. .+++.+|.++...|++++|+..|++++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 455666666666666666666666666666642 345556666666666666666666666666654
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.96 E-value=1.1e-08 Score=94.69 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHH
Q 003249 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (836)
Q Consensus 512 ~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~ 591 (836)
++.++..|..+..+|++++|+..|+++++.+|++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------------------------------- 36 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST--------------------------------------------- 36 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------------------------------------------
Confidence 35678899999999999999999999999999762
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
....+++.+|.++.+.|++++|+..|+.++...|++ +.+++.+|.++.++|++++|+..|+++++..
T Consensus 37 ----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 37 ----------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ----------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 224567889999999999999999999999999885 7899999999999999999999999999998
Q ss_pred cch
Q 003249 669 RSF 671 (836)
Q Consensus 669 p~~ 671 (836)
|+.
T Consensus 107 p~~ 109 (119)
T TIGR02795 107 PGS 109 (119)
T ss_pred cCC
Confidence 876
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=5.1e-08 Score=108.30 Aligned_cols=130 Identities=17% Similarity=0.098 Sum_probs=107.9
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 003249 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE-CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG 550 (836)
Q Consensus 472 i~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~-~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~ 550 (836)
...+|....+++.++..++..|++++|...++..|+..|++. .+..++.++.+.++.++|++-+++++.++|+.
T Consensus 299 ~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~----- 373 (484)
T COG4783 299 KRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS----- 373 (484)
T ss_pred HHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-----
Confidence 333478888888888888888899999888888888888754 44557888888888888888888888887764
Q ss_pred hHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003249 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (836)
Q Consensus 551 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~A 630 (836)
..++.+.|.+|.+.|++++|+..++..
T Consensus 374 -----------------------------------------------------~~l~~~~a~all~~g~~~eai~~L~~~ 400 (484)
T COG4783 374 -----------------------------------------------------PLLQLNLAQALLKGGKPQEAIRILNRY 400 (484)
T ss_pred -----------------------------------------------------cHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 345667788889999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003249 631 RQHAASDHERLVYEGWILYDTSHCEEGLR 659 (836)
Q Consensus 631 l~l~P~~~eal~~~G~il~~~G~~eeAl~ 659 (836)
+.-+|+|+..|..++.++-++|+..+|..
T Consensus 401 ~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 401 LFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred hhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 99999999999999999999998888754
No 139
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=1.6e-06 Score=92.50 Aligned_cols=411 Identities=14% Similarity=0.116 Sum_probs=249.2
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHhcc--chhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhh-hcCChh
Q 003249 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAG--HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS-LYCEGD 462 (836)
Q Consensus 386 ~~~lG~~~~~~g~y~eAi~~f~~Al~l~--~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~-~~~~~~ 462 (836)
-..+|.+++..|+|++|...|+-+.+.+ |...+.++|.+++-.|.+.+|-....++-.. |---......+ .+++ +
T Consensus 60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-pL~~RLlfhlahklnd-E 137 (557)
T KOG3785|consen 60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-PLCIRLLFHLAHKLND-E 137 (557)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCc-H
Confidence 3457899999999999999999887763 4456889999999999999997776554111 10000111111 1111 2
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHhh
Q 003249 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLE-LRFCFFLALEDYQAALCDVQAILTL 541 (836)
Q Consensus 463 eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~-~rg~~~~~lg~~~~Ai~d~~~al~l 541 (836)
+.+..|..-++ +..+-...++.+....-.|+|||..|.+++.-+|+..+++ +.+.+|.++.=|+-+-+-..--|+-
T Consensus 138 k~~~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 138 KRILTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 22333333222 1113344455555555669999999999999999987766 4799999999999999888888899
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhhhH--hHHHHHHhhhh------ccCcc---cccchHHHHHHHHhcCCCCHHHHHHH
Q 003249 542 SPDYRMFEGRVAASQLHMLVREHIDNW--TIADCWLQLYD------RWSSV---DDIGSLSVIYQMLESDAPKGVLYFRQ 610 (836)
Q Consensus 542 ~P~~~~~~~~~~~~~~~~~l~~~~~~~--~~a~~~~~~~~------~~~~~---~~~~aL~~~~~al~~~P~~~~~~~~~ 610 (836)
-||..-+.+-.+......-.....++. +.|+..-+-|. +..-+ .--++|.++--.+.. -+++..++
T Consensus 215 ~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL 291 (557)
T KOG3785|consen 215 FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNL 291 (557)
T ss_pred CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhh
Confidence 999866554433322211111111110 11110000000 00000 001234443333333 35788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---Hhcc----------cc---hHHH
Q 003249 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES---IQMK----------RS---FEAF 674 (836)
Q Consensus 611 gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~A---i~l~----------p~---~~a~ 674 (836)
.+-++++|+.++|+... -.++|..|.-|...|.+...+|+--...+...-| +.+- |. ..++
T Consensus 292 ~iYyL~q~dVqeA~~L~---Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLC---KDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred eeeecccccHHHHHHHH---hhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 88899999999987664 4689999999999999999988876554443332 2220 10 0111
Q ss_pred HHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHc--CCchh-HHhhHH
Q 003249 675 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK--IRHTR-AHQGLA 751 (836)
Q Consensus 675 ~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~--l~~~~-A~~~la 751 (836)
|-.-....+ ++ .|-+.++.+ .....+-..|++.++...|+|.+|.+.|-+.-. +++.. -..-+|
T Consensus 369 fFL~~qFdd----------Vl-~YlnSi~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LA 435 (557)
T KOG3785|consen 369 FFLSFQFDD----------VL-TYLNSIESY--FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLA 435 (557)
T ss_pred HHHHHHHHH----------HH-HHHHHHHHH--hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHH
Confidence 111111100 00 011111110 011234668999999999999999999987743 44443 335689
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH-------HHccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhhh
Q 003249 752 RVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR-------SEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNL 824 (836)
Q Consensus 752 ~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r-------~~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~~ 824 (836)
++|...|+.+-||+-|-| -.+++++..-. ..-+++=-|-+.|.+-=.+||+--+==..||++-+.+..+
T Consensus 436 rCyi~nkkP~lAW~~~lk----~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeGKRGACaG~f~~l 511 (557)
T KOG3785|consen 436 RCYIRNKKPQLAWDMMLK----TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEGKRGACAGLFRQL 511 (557)
T ss_pred HHHHhcCCchHHHHHHHh----cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCCccchHHHHHHHH
Confidence 999999999999987744 23334443322 1224445577778888899999777778999998877643
No 140
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.93 E-value=2.1e-06 Score=93.40 Aligned_cols=282 Identities=15% Similarity=0.099 Sum_probs=193.2
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 463 eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~--~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
.|.....++-+-.+.-.-+|..-+.+-.+.|+++.|=....+|-++.++ ......|+.+....||++.|.....++++
T Consensus 102 qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~ 181 (400)
T COG3071 102 QAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLE 181 (400)
T ss_pred HHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3333355556666666677777778888999999999999999999555 45566789999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~ 620 (836)
..|.++... .+....+...+.|+.......-....+-+.+-+. ..+.+ +--.|+ +.....-
T Consensus 182 ~~pr~~~vl------rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-~~le~-----------~a~~gl-L~q~~~~ 242 (400)
T COG3071 182 MTPRHPEVL------RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-ARLEQ-----------QAWEGL-LQQARDD 242 (400)
T ss_pred hCcCChHHH------HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-HHHHH-----------HHHHHH-HHHHhcc
Confidence 999997522 2223334445555444322222222222222110 01100 001111 1111111
Q ss_pred HHHH---HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHH
Q 003249 621 EAAM---RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 697 (836)
Q Consensus 621 ~eAl---~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~ 697 (836)
+.+. ...+..-+.--++++.-...+.=+.++|+.++|.+..+++++-+-+.. ...+ -..+.|+.....++.
T Consensus 243 ~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~-~~~l~~~d~~~l~k~ 316 (400)
T COG3071 243 NGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRL-IPRLRPGDPEPLIKA 316 (400)
T ss_pred ccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHH-HhhcCCCCchHHHHH
Confidence 1111 233333333334566677777888899999999999999998664432 1111 113678888888999
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-hHHhhHHHHHHhcCCHHHHHHHHHHHHH
Q 003249 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (836)
Q Consensus 698 l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-~A~~~la~~~~~~g~~~~A~~~~~kaie 772 (836)
.++.++..++. +..+..||..|.+.+.|.+|-..++.||+..+. ..+.-+|.++...|+.++|-+.+.+++-
T Consensus 317 ~e~~l~~h~~~---p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 317 AEKWLKQHPED---PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHhCCCC---hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99999877776 489999999999999999999999999999775 6778899999999999999999988883
No 141
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.93 E-value=1.7e-08 Score=117.66 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhhccc---hHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhh
Q 003249 382 RLLAFHQLGCVRLLRKE---YDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS 456 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~---y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~ 456 (836)
.|..++..|..+...+. +..|+.+|++|++++|.+ ++.+++.++..+..+ .+ .. ..
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~-------------~~-~~-----~~ 398 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ-------------QP-LD-----EK 398 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc-------------CC-cc-----HH
Confidence 45566788888776555 889999999999998876 456666555332211 00 00 00
Q ss_pred hcCChhhHHHHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHH
Q 003249 457 LYCEGDKRWEDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCD 534 (836)
Q Consensus 457 ~~~~~~eAi~d~~kAi~l--dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d 534 (836)
. ...+.....+++.+ +|..+.+|.-+|.+....|++++|...+++|++++|+..+|..+|.++...|++++|++.
T Consensus 399 ~---l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 399 Q---LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred H---HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0 13455556777775 888889999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHhhCCCchhhh
Q 003249 535 VQAILTLSPDYRMFE 549 (836)
Q Consensus 535 ~~~al~l~P~~~~~~ 549 (836)
|++|+.++|.+..++
T Consensus 476 ~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 476 YSTAFNLRPGENTLY 490 (517)
T ss_pred HHHHHhcCCCCchHH
Confidence 999999999987543
No 142
>PRK11906 transcriptional regulator; Provisional
Probab=98.91 E-value=2e-08 Score=112.07 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=114.5
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHH---hhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCc--cccc
Q 003249 516 ELRFCFFLAL---EDYQAALCDVQAIL---TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSS--VDDI 587 (836)
Q Consensus 516 ~~rg~~~~~l---g~~~~Ai~d~~~al---~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~--~~~~ 587 (836)
+.||...... .+.+.|+..|.+|+ +++|+++.+|.-++..+....+ ..|.. .+-.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~-----------------~g~~~~~~~~~ 321 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL-----------------HGKSELELAAQ 321 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH-----------------hcCCCchHHHH
Confidence 5566655333 45678889999999 9999998888776654433321 22222 1223
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 588 ~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
+++....++++++|+++.+++..|.++.-.++++.|+..|++|+.++|+.+.+|+..||++.-.|+.++|++..++|+++
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccch
Q 003249 668 KRSF 671 (836)
Q Consensus 668 ~p~~ 671 (836)
+|.-
T Consensus 402 sP~~ 405 (458)
T PRK11906 402 EPRR 405 (458)
T ss_pred Cchh
Confidence 9865
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.91 E-value=1.4e-08 Score=87.49 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~ 685 (836)
.++++|.++...|++++|+..++++++..|+++.+++.+|.++..+|++++|++.|++++.+.|..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-------------- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--------------
Confidence 467788888888888888888888888888888888888888888888888888888888766544
Q ss_pred cCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc
Q 003249 686 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (836)
Q Consensus 686 l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~ 743 (836)
..++..+|.++...|++++|...+++++++.|
T Consensus 68 --------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 68 --------------------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred --------------------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 24677888888888888888888888887754
No 144
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=0.0001 Score=81.69 Aligned_cols=411 Identities=11% Similarity=0.027 Sum_probs=263.3
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhh----hcC
Q 003249 386 FHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS----LYC 459 (836)
Q Consensus 386 ~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~----~~~ 459 (836)
+..-|..-..++++..|...|++||..++.+ -|...+..-.+.....-|...+++||.+-|..-..|..-. .++
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg 155 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence 3344555577888999999999999876543 4555555555666677888899999999887666554432 245
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 460 ~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
....|.+.|+++++..|+- .+|..--.-=...+..+.|-+.|.+-+-..|+...|..-+.+=.+-|....|...|++|+
T Consensus 156 Ni~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred ccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5578889999999999974 677766666677788899999999998888887777666777777888888888888888
Q ss_pred hhCCCchhh-hhhHHHHHHHHHHHHHhhhHhHHHHHHh-hhhccCcc----------------cccch----H-----HH
Q 003249 540 TLSPDYRMF-EGRVAASQLHMLVREHIDNWTIADCWLQ-LYDRWSSV----------------DDIGS----L-----SV 592 (836)
Q Consensus 540 ~l~P~~~~~-~~~~~~~~~~~~l~~~~~~~~~a~~~~~-~~~~~~~~----------------~~~~a----L-----~~ 592 (836)
..--+.... ..-.+ .....+..+.+++|....+ .+|.++.. .|... + --
T Consensus 235 e~~~~d~~~e~lfva----FA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVA----FAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 866554321 10001 0112223333444432222 22333221 11111 1 14
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH-------HH---HhcCCHHHHHHHHH
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW-------IL---YDTSHCEEGLRKAE 662 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~-------il---~~~G~~eeAl~~~~ 662 (836)
|.+.+..+|-+-.+|+.--.+....|+.+.-.+.|++||.--|...+--+.+-. ++ ....+.+.+-+.|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 567788889888888888888888888888889999999888776553333322 22 26788888888899
Q ss_pred HHHhcccchHHHHHHHHHhh-ccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 663 ESIQMKRSFEAFFLKAYALA-DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 663 ~Ai~l~p~~~a~~~~a~aL~-~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+|.|=|.-.-.|.+...+. .--+...+...+-+.+-.||...|+. -.+...=.+-.+++++|.-...|.+-|+-
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~----KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD----KLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch----hHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99988886543344333221 11122333344455566666443332 12222222334567888888888888888
Q ss_pred Cch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhc-CCCHHHHHHH-----HHccCHHHHHHHHHHhHhcCC
Q 003249 742 RHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKA-RNNASAYEKR-----SEYCDRELTRADLEMVTQLDP 805 (836)
Q Consensus 742 ~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~-p~~a~Ay~~r-----~~~~~~~~A~~D~~~Ai~l~P 805 (836)
.|. .+....|.+-..+|+.+.|-+-|+-||... -+-+....+- -+-|+++.|.+-|++-++..+
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 775 466777778888888888888888777443 2223333332 123556667666666665554
No 145
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=3e-07 Score=102.32 Aligned_cols=152 Identities=17% Similarity=0.045 Sum_probs=107.8
Q ss_pred hhHHHHHH-HHHhcCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 003249 462 DKRWEDLD-KATALDPTL----SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV 535 (836)
Q Consensus 462 ~eAi~d~~-kAi~ldP~~----~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~ 535 (836)
++-|++.+ +|..+-|-+ ......+..+.....-+......--++...+|. +.+.|.++..++..|++++|+.-+
T Consensus 250 ~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 250 EERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred hhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHH
Confidence 67777777 666654432 333344443332222222222222233333454 566777788888888888888777
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003249 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (836)
Q Consensus 536 ~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~ 615 (836)
+..+...|++ +..+--+|.++.
T Consensus 330 ~~L~~~~P~N----------------------------------------------------------~~~~~~~~~i~~ 351 (484)
T COG4783 330 QPLIAAQPDN----------------------------------------------------------PYYLELAGDILL 351 (484)
T ss_pred HHHHHhCCCC----------------------------------------------------------HHHHHHHHHHHH
Confidence 7766665555 445555677889
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 616 ~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+.|+.++|++.+++++.+.|+.+-..+++|.+|.+.|++.+|+...++.+.-+|++
T Consensus 352 ~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 352 EANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999998877776
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.89 E-value=2.2e-07 Score=98.43 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 477 ~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~----~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
..+..++..|..+.+.|++++|+..|++++...|.. .+.+.+|.+|.++|+|++|+..|++.+++.|++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 456678889999999999999999999999999963 34567899999999999999999999999999854
No 147
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.88 E-value=3.8e-08 Score=98.58 Aligned_cols=98 Identities=15% Similarity=0.132 Sum_probs=90.6
Q ss_pred hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHh
Q 003249 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMT 491 (836)
Q Consensus 416 ~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~ 491 (836)
.-+..+|.+|...|-..-|.-++++++.++|+.+.++.-.|.| ++.+.|.+.|+..+++||.+-.+..|||..+.-
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 3567889999999999999999999999999999999999976 666899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCChH
Q 003249 492 KQNVEAALAEINRILGFKLALE 513 (836)
Q Consensus 492 ~g~~~eAi~~~~kai~l~P~~~ 513 (836)
-||+.-|..++.+--+-||++.
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCCh
Confidence 9999999999999999999743
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.85 E-value=2.8e-08 Score=85.46 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHH
Q 003249 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (836)
Q Consensus 514 ~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~ 593 (836)
+++++|..+...|++++|+..|+++++..|+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------------- 34 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA----------------------------------------------- 34 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH-----------------------------------------------
Confidence 456778888888888888888888888877652
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 003249 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (836)
Q Consensus 594 ~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p 669 (836)
..++.+|.++...+++++|+..+++++...|.+..++..+|.++..+|++++|...+++++++.|
T Consensus 35 -----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 35 -----------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 34566777788888999999999999999999999999999999999999999999999998776
No 149
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.83 E-value=4.3e-06 Score=97.31 Aligned_cols=304 Identities=14% Similarity=0.031 Sum_probs=187.9
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----C
Q 003249 386 FHQLGCVRLLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----C 459 (836)
Q Consensus 386 ~~~lG~~~~~~g~y~eAi~~f~~Al~l--~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~ 459 (836)
+.....++.+.|++++|++.+++.... +.....--.|.++..+|+.++|...|...|..+|++..-|...... .
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhc
Confidence 334456778889999999988765442 3334455678889999999888888888888888776655443211 0
Q ss_pred -----ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCH---HHH
Q 003249 460 -----EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDY---QAA 531 (836)
Q Consensus 460 -----~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~---~~A 531 (836)
..+.-.+.|++.-+..|... +...+.+.+.....|...+..|=+-.=-+--|....++--+|....+. ++-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~-~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSD-APRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCcccc-chhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 12444556776666666543 223333333344445555544433321121233333333333322221 122
Q ss_pred HHHHHHHHhhCCCc----------hhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCC
Q 003249 532 LCDVQAILTLSPDY----------RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA 601 (836)
Q Consensus 532 i~d~~~al~l~P~~----------~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P 601 (836)
+..|...++-++.. +..+. -...++...+...+++++ ++..++++|+..|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~l--w~~~~lAqhyd~~g~~~~------------------Al~~Id~aI~htP 225 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLL--WTLYFLAQHYDYLGDYEK------------------ALEYIDKAIEHTP 225 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHH--HHHHHHHHHHHHhCCHHH------------------HHHHHHHHHhcCC
Confidence 22333333222111 10100 011222223333333333 4899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL 681 (836)
..+++|..+|.++-..|++++|.+.++.|.++++.|-..-..-+-.+.+.|+.++|.+....-.+-+-
T Consensus 226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~------------ 293 (517)
T PF12569_consen 226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV------------ 293 (517)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC------------
Confidence 99999999999999999999999999999999999999888899999999999999876554432210
Q ss_pred hccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 682 ~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+|.... ...+-.+-....|.+|...|++..|+.-|....++
T Consensus 294 -----~~~~~L--------------~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 294 -----DPLSNL--------------NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred -----CcccCH--------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 111100 01112355667889999999999999998888775
No 150
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.82 E-value=1.1e-08 Score=85.02 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 608 ~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+.+|.++.+.|++++|++.|+++++.+|+++++++.+|.++..+|++++|+..|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999999999999999999999999999999999976
No 151
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=3.4e-07 Score=94.12 Aligned_cols=180 Identities=17% Similarity=0.143 Sum_probs=149.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHH
Q 003249 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a 678 (836)
.-|+.+..|-.-.++.+.-|+.+-|..++++....-|++...--..|..+-.+|++++|++.|+.-++-+|.+.+.+-+-
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK 126 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK 126 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence 44666777777788888999999999999999988899999999999999999999999999999999999987777654
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHh
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 756 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~ 756 (836)
.+.... .+....+|+.+.+.++.... +.+||..++.+|...|+|++|.=||++.+=+.|. .-|..+|.+++-
T Consensus 127 lAilka---~GK~l~aIk~ln~YL~~F~~---D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 127 LAILKA---QGKNLEAIKELNEYLDKFMN---DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHHHHH---cCCcHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 443321 12333566666666665444 3799999999999999999999999999999875 467889999888
Q ss_pred cC---CHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003249 757 KN---NKTTAYEEMTKLIKKARNNASAYEKR 784 (836)
Q Consensus 757 ~g---~~~~A~~~~~kaie~~p~~a~Ay~~r 784 (836)
.| +++-|...|.++++++|.|-.+++..
T Consensus 201 ~gg~eN~~~arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 201 QGGAENLELARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence 87 47889999999999999888887664
No 152
>PRK11906 transcriptional regulator; Provisional
Probab=98.80 E-value=1.3e-07 Score=105.66 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=112.5
Q ss_pred hhHHHHHHHHH---hcCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCH
Q 003249 462 DKRWEDLDKAT---ALDPTLSYPYMYRASSLMTK---------QNVEAALAEINRILGFKLA-LECLELRFCFFLALEDY 528 (836)
Q Consensus 462 ~eAi~d~~kAi---~ldP~~~~ay~~rg~~l~~~---------g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~ 528 (836)
+.|+..|.+|+ ++||+++.+|..++-+++.. ....+|.+.-.+|++++|+ +.++...|.+..-.|++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 56788899999 99999999998888877544 2345667777777777774 56666677777777777
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHH
Q 003249 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF 608 (836)
Q Consensus 529 ~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~ 608 (836)
+.|+..|++|+.++|++ +.+|+
T Consensus 355 ~~a~~~f~rA~~L~Pn~----------------------------------------------------------A~~~~ 376 (458)
T PRK11906 355 KVSHILFEQAKIHSTDI----------------------------------------------------------ASLYY 376 (458)
T ss_pred hhHHHHHHHHhhcCCcc----------------------------------------------------------HHHHH
Confidence 77777777777776665 44566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 003249 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 609 ~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~i-l~~~G~~eeAl~~~~~Ai 665 (836)
..|.++.-.|+.++|++.+++|++++|--..+=...=|+ .|-....++||+.|-+-.
T Consensus 377 ~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 377 YRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhcc
Confidence 677777888999999999999999999988888888888 888888999988665443
No 153
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.78 E-value=4.2e-07 Score=96.35 Aligned_cols=178 Identities=6% Similarity=0.022 Sum_probs=128.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcccchH----HH
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL---VYEGWILYDTSHCEEGLRKAEESIQMKRSFE----AF 674 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal---~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~----a~ 674 (836)
..+..+|..|....+.|++++|++.|++++...|..+.+. +.+|.+++++|++++|+..|++.|++.|+.+ ++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4677889999999999999999999999999999998876 8999999999999999999999999999863 68
Q ss_pred HHHHHHh---hc-----------cccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 675 FLKAYAL---AD-----------SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 675 ~~~a~aL---~~-----------~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
|.+|... ++ ...|+.....++..+++.++..|+..-.++|...+..+...+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la-------------- 175 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA-------------- 175 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH--------------
Confidence 8888652 21 1123344456667778888777776433333332222211111
Q ss_pred CCchhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH-------HHccCHHHHHHHH
Q 003249 741 IRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR-------SEYCDRELTRADL 797 (836)
Q Consensus 741 l~~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r-------~~~~~~~~A~~D~ 797 (836)
.-...+|+.|.++|.+..|+..++.+|+--|+....-... ..+|..++|....
T Consensus 176 ----~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 176 ----KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred ----HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 1224567888888888888888888888887765443322 2456777766543
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.75 E-value=1e-06 Score=95.65 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=94.2
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 514 CLELRFCFFLAL-EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 514 ~~~~rg~~~~~l-g~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
++...|.+|... |++++|++.|++|+.+--.. +....+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--------------------~~~~~a--------------------- 154 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--------------------GSPHSA--------------------- 154 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--------------------T-HHHH---------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--------------------CChhhH---------------------
Confidence 355578899998 99999999999999872211 000000
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS-------DHERLVYEGWILYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~-------~~eal~~~G~il~~~G~~eeAl~~~~~Ai 665 (836)
...+.+.|.++.++|+|++|+..|++.....-+ -.+.+...+.++..+|+.-.|-..+++..
T Consensus 155 -----------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 155 -----------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp -----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred -----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233456677889999999999999999874321 22456788999999999999999999999
Q ss_pred hcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCc
Q 003249 666 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV--DCGQLDLAADCYSNALKIRH 743 (836)
Q Consensus 666 ~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~--~~g~~deAi~~y~kAL~l~~ 743 (836)
.++|+|.. .+......++=.++. +...+++|+..|++.-+|++
T Consensus 224 ~~~~~F~~-----------------------------------s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 224 SQDPSFAS-----------------------------------SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TTSTTSTT-----------------------------------SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred hhCCCCCC-----------------------------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 99998721 011122222222222 34688999999988888865
Q ss_pred h
Q 003249 744 T 744 (836)
Q Consensus 744 ~ 744 (836)
-
T Consensus 269 w 269 (282)
T PF14938_consen 269 W 269 (282)
T ss_dssp H
T ss_pred H
Confidence 3
No 155
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=5.7e-08 Score=96.21 Aligned_cols=110 Identities=19% Similarity=0.209 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHH
Q 003249 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718 (836)
Q Consensus 639 eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nl 718 (836)
..+-..|.-++..|+|++|.+.|..||++=|.-.. + .....|.|+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e--------------------------------~rsIly~Nr 140 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTST---E--------------------------------ERSILYSNR 140 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---H--------------------------------HHHHHHhhh
Confidence 45567899999999999999999999988765410 0 013578999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 003249 719 GSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEK 783 (836)
Q Consensus 719 G~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~ 783 (836)
|.++.++++++.||.++.+||+|+|+ .|...+|.+|.+..++++|++||.+++|++|.+-+|-..
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 99999999999999999999999986 688999999999999999999999999999998777544
No 156
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=4.3e-06 Score=87.52 Aligned_cols=361 Identities=14% Similarity=0.077 Sum_probs=205.5
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhccchhhHh--hHHHHHHhcCCHHHHHHHHHHhHhccCCchH-HHHHhh--hc
Q 003249 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIA--GLARLGYIKGHKLWAYEKLNSVISSVTPLGW-MYQERS--LY 458 (836)
Q Consensus 384 ~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~--~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~-ay~~r~--~~ 458 (836)
-++..+|.+|....+|.+|..||++.-.+-|..+.+ .-|...++.|.+..|+...... ..++++-. ..+-++ .|
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~-~D~~~L~~~~lqLqaAIkY 123 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLL-LDNPALHSRVLQLQAAIKY 123 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHh-cCCHHHHHHHHHHHHHHhc
Confidence 367789999999999999999999988776666543 3355667777777776654322 11122111 111111 11
Q ss_pred CChhhHHHHHHHHHhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 003249 459 CEGDKRWEDLDKATALDP--TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDV 535 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP--~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P-~~~~~~~rg~~~~~lg~~~~Ai~d~ 535 (836)
... -+.-..-.++.-| +.+....+.|.++++.|++++|+.-|+.|+++.- ++-..++.+.++++.|+|+.|+...
T Consensus 124 se~--Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 124 SEG--DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred ccc--cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHH
Confidence 111 1111233455556 6788899999999999999999999999999877 5667789999999999999999988
Q ss_pred HHHHhh----CCCchh----------hhhh---HHHH------HHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 536 QAILTL----SPDYRM----------FEGR---VAAS------QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 536 ~~al~l----~P~~~~----------~~~~---~~~~------~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
...|+. .|..-- +.++ ++.. ++.-.++-..+.++.|.
T Consensus 202 SEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~-------------------- 261 (459)
T KOG4340|consen 202 SEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQ-------------------- 261 (459)
T ss_pred HHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHH--------------------
Confidence 877764 344310 1111 0000 01111111122222221
Q ss_pred HHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 593 IYQMLESDAP-----KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 593 ~~~al~~~P~-----~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
+-.+.+-|. ++....|+++.- ..+++.+..+-++-.++++|=-+|.+-|+=.++.+..-|+-|-+ .+.-
T Consensus 262 -eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAAD----vLAE 335 (459)
T KOG4340|consen 262 -EALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAAD----VLAE 335 (459)
T ss_pred -HHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHH----HHhh
Confidence 001112121 334444555432 23556777777778888888777888888888887777776654 3444
Q ss_pred ccchHHHHHHH--HHhhccc-cCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 668 KRSFEAFFLKA--YALADSS-QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 668 ~p~~~a~~~~a--~aL~~~~-l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
+|+.--+|+.- +.|-+.- .-+.+++.+.+.++..-....+.+|+-.+-......-.+......|+..|+++|+. ..
T Consensus 336 n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~-YL 414 (459)
T KOG4340|consen 336 NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK-YL 414 (459)
T ss_pred CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HH
Confidence 45432122111 1111111 12223333333322221111122222111111111122334566788888888886 33
Q ss_pred hHHhhHHHHHHhcCCHHHHHHHHHHHHHhc
Q 003249 745 RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (836)
Q Consensus 745 ~A~~~la~~~~~~g~~~~A~~~~~kaie~~ 774 (836)
......|++++.+.+|..+-..|.+..+.=
T Consensus 415 PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 415 PVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 345567888999999999888888877653
No 157
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.4e-07 Score=103.17 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 480 YPYMYRASSLMTKQNVEAALAEINRILGF 508 (836)
Q Consensus 480 ~ay~~rg~~l~~~g~~~eAi~~~~kai~l 508 (836)
.-..-+|+.|++.|+|..|+..|.+|+..
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~ 237 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSF 237 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHH
Confidence 44567899999999999999999998864
No 158
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.72 E-value=9.3e-07 Score=91.22 Aligned_cols=184 Identities=13% Similarity=0.106 Sum_probs=110.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh---hhh
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM---FEG 550 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~----~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~---~~~ 550 (836)
.+..++..|..+++.|++++|+..|++++..-|+ +++...+|.++...|+|++|+..|++-++..|++.. ++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 4577899999999999999999999999999885 367888999999999999999999999999999854 222
Q ss_pred hHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccc---cchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003249 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD---IGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (836)
Q Consensus 551 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~---~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~ 627 (836)
..+...... +... . +...|. ..++..+...+...|++.-+-. |..-+
T Consensus 84 ~~g~~~~~~--------~~~~---~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l 133 (203)
T PF13525_consen 84 MLGLSYYKQ--------IPGI---L-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRL 133 (203)
T ss_dssp HHHHHHHHH--------HHHH---H------TT---HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHH
T ss_pred HHHHHHHHh--------Cccc---h-----hcccChHHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHH
Confidence 222111000 0000 0 000000 0134555555666665443311 10000
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCcc
Q 003249 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSD 707 (836)
Q Consensus 628 ~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~ 707 (836)
. .+...-++--+..|..|++.|.|..|+..|+.+|+--|+..
T Consensus 134 ~---~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~----------------------------------- 175 (203)
T PF13525_consen 134 A---ELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP----------------------------------- 175 (203)
T ss_dssp H---HHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH-----------------------------------
T ss_pred H---HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc-----------------------------------
Confidence 0 00001122335567888888888888888888887666542
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHH
Q 003249 708 RLRKGQALNNLGSVYVDCGQLDLA 731 (836)
Q Consensus 708 ~~~~~~a~~nlG~~y~~~g~~deA 731 (836)
...+++.-++.+|..+|..+.|
T Consensus 176 --~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 176 --AAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp --HHHHHHHHHHHHHHHTT-HHHH
T ss_pred --hHHHHHHHHHHHHHHhCChHHH
Confidence 1245777888888888888744
No 159
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.3e-07 Score=101.49 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=93.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHH
Q 003249 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 720 (836)
Q Consensus 641 l~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~ 720 (836)
.-.+|..+++.|+|..|+..|++|+..=.+ +.+.+++....+. +++ ..++.|++.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~------------~~~~~~ee~~~~~-----~~k--------~~~~lNlA~ 265 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEY------------RRSFDEEEQKKAE-----ALK--------LACHLNLAA 265 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhc------------cccCCHHHHHHHH-----HHH--------HHHhhHHHH
Confidence 346799999999999999999999964111 1112221111111 111 357999999
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003249 721 VYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 784 (836)
Q Consensus 721 ~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r 784 (836)
+|.++++|.+|+...+++|+++| ..|.+.+|+++..+|+++.|+.+|.|+++++|+|..+-.-.
T Consensus 266 c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999999999999999965 47999999999999999999999999999999997775444
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.70 E-value=6.4e-08 Score=80.43 Aligned_cols=64 Identities=22% Similarity=0.202 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 003249 483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (836)
Q Consensus 483 ~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~ 546 (836)
+.+|.++.+.|++++|+..|+++++.+|+ .++++.+|.++..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999997 58899999999999999999999999999999873
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.69 E-value=2.9e-07 Score=98.48 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHH
Q 003249 603 KGVLYFRQSLLL-LRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (836)
Q Consensus 603 ~~~~~~~~gl~l-~~l~~~~eAl~~~~~Al~l~P~~---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a 678 (836)
....+|..+..+ .+.|++++|+..|+..++..|++ +.+++.+|.+++.+|++++|+..|+++++..|+.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s------- 213 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS------- 213 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------
Confidence 457788888876 66799999999999999999998 5799999999999999999999999999776654
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHH
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLA 751 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la 751 (836)
+..++++..+|.+|.++|++++|+..|++.++.-|...+...|
T Consensus 214 ------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 214 ------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred ------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 2236789999999999999999999999888876654444333
No 162
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.67 E-value=1.3e-07 Score=87.67 Aligned_cols=85 Identities=25% Similarity=0.293 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---h--HHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---L--ECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~---~--~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
++|++-|.+|+.+-|..+.+|+||+.++.-+|+.++|+.++++|+++.-+ . .++..||.+|..+|+-+.|..||+
T Consensus 60 d~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe 139 (175)
T KOG4555|consen 60 DGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFE 139 (175)
T ss_pred HHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHH
Confidence 78888899999999999999999999999999999999999999999653 2 557789999999999999999999
Q ss_pred HHHhhCCCch
Q 003249 537 AILTLSPDYR 546 (836)
Q Consensus 537 ~al~l~P~~~ 546 (836)
.|-++-..++
T Consensus 140 ~AA~LGS~FA 149 (175)
T KOG4555|consen 140 AAAQLGSKFA 149 (175)
T ss_pred HHHHhCCHHH
Confidence 9999987774
No 163
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.67 E-value=4.7e-07 Score=96.83 Aligned_cols=108 Identities=8% Similarity=-0.040 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 003249 478 LSYPYMYRASSL-MTKQNVEAALAEINRILGFKLAL----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (836)
Q Consensus 478 ~~~ay~~rg~~l-~~~g~~~eAi~~~~kai~l~P~~----~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~ 552 (836)
....++..|..+ ...|+|++|+..|++.|+..|+. .+++.+|.+|..+|++++|+..|+++++..|+.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s------- 213 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS------- 213 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------
Confidence 346677777765 56788888888888888888853 577788888888888888888888888888876
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003249 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (836)
Q Consensus 553 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~ 632 (836)
|..+.+++..|.++..+|++++|...|+++++
T Consensus 214 ------------------------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 214 ------------------------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred ------------------------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33345556666666666666666666666666
Q ss_pred cCCCCHHH
Q 003249 633 HAASDHER 640 (836)
Q Consensus 633 l~P~~~ea 640 (836)
..|+...+
T Consensus 246 ~yP~s~~a 253 (263)
T PRK10803 246 KYPGTDGA 253 (263)
T ss_pred HCcCCHHH
Confidence 66665544
No 164
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.67 E-value=5.2e-07 Score=87.84 Aligned_cols=119 Identities=16% Similarity=0.078 Sum_probs=99.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhh
Q 003249 491 TKQNVEAALAEINRILGFKLAL----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (836)
Q Consensus 491 ~~g~~~eAi~~~~kai~l~P~~----~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 566 (836)
..++...+...+++.++-.|+. .+...+|.++...|++++|+..|++++.-.|+...
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l------------------- 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL------------------- 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------------
Confidence 5788888888899999999963 34555788999999999999999999998776521
Q ss_pred hHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003249 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (836)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~ 646 (836)
...++++++.++..+|++++|+..++. +.-.+-.+.++..+|.
T Consensus 84 ------------------------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 84 ------------------------------------KPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred ------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 134567788899999999999999966 4556667788999999
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 003249 647 ILYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 647 il~~~G~~eeAl~~~~~Ai 665 (836)
|+..+|++++|++.|++||
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999986
No 165
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=1e-07 Score=94.49 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=92.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHH
Q 003249 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (836)
Q Consensus 518 rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al 597 (836)
-|.-++..|+|++|..-|..||.+-|.-..-
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e------------------------------------------------- 131 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTE------------------------------------------------- 131 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHH-------------------------------------------------
Confidence 4788899999999999999999999976320
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 598 ~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
-.+++|.|+|.++++|+.++.|+.+..+||+++|.+..|+..|+.+|-++.+|++|+.+|.+.++++|+.
T Consensus 132 ----~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 132 ----ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred ----HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 0146789999999999999999999999999999999999999999999999999999999999999987
No 166
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.65 E-value=7.7e-08 Score=107.37 Aligned_cols=73 Identities=10% Similarity=0.026 Sum_probs=68.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhc-ccch
Q 003249 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHER---LVYEGWILYDTSHCEEGLRKAEESIQM-KRSF 671 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~ea---l~~~G~il~~~G~~eeAl~~~~~Ai~l-~p~~ 671 (836)
-+|+++.+|+++|.+|..+|+|++|+..|++|++++|+++++ |+|+|.+|..+|++++|++++++||++ ++.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 579999999999999999999999999999999999999976 999999999999999999999999998 4444
No 167
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.65 E-value=4.7e-07 Score=84.02 Aligned_cols=105 Identities=15% Similarity=0.057 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhcc
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 684 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~ 684 (836)
...-.+|+.+..-|+.++|++.|.+++.+.|..+.+|+|++.++.-+|+-++|+++.++|+++.-+-
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~------------- 110 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ------------- 110 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-------------
Confidence 3445688999999999999999999999999999999999999999999999999999999874211
Q ss_pred ccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchh
Q 003249 685 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR 745 (836)
Q Consensus 685 ~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~ 745 (836)
.--.-++|..+|.+|..+|+-|.|..+|..|-++....
T Consensus 111 -----------------------trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 111 -----------------------TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred -----------------------chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 00013789999999999999999999999999986543
No 168
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.64 E-value=7.6e-08 Score=107.42 Aligned_cols=72 Identities=19% Similarity=0.141 Sum_probs=66.8
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-H---HHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCc
Q 003249 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-E---CLELRFCFFLALEDYQAALCDVQAILTL-SPDY 545 (836)
Q Consensus 474 ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~---~~~~rg~~~~~lg~~~~Ai~d~~~al~l-~P~~ 545 (836)
-+|+++.+|+|+|.+|..+|+|++|++.|++||+++|++ + +|+|+|.+|..+|++++|++++++|+++ +|.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f 146 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKF 146 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhH
Confidence 589999999999999999999999999999999999984 3 4899999999999999999999999998 4444
No 169
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.9e-07 Score=96.62 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
++-+.-++.-++.||+|++-|..+|.+|..+|++..|+..|.+|++|.|++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n 189 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN 189 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC
Confidence 444445555566666666666666666666666666666666666665555
No 170
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=8.4e-07 Score=96.43 Aligned_cols=249 Identities=14% Similarity=0.077 Sum_probs=162.3
Q ss_pred HhhccchHHHHHHHHHHHhccch---hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----CChhhHH
Q 003249 393 RLLRKEYDEAEHLFEAAVNAGHI---YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRW 465 (836)
Q Consensus 393 ~~~~g~y~eAi~~f~~Al~l~~~---~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~~~~eAi 465 (836)
++-.|.|..++..++. ...++. .....+.|.+..+|++...+....+. ..|.+.. ......| ...+.++
T Consensus 11 ~fy~G~Y~~~i~e~~~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~a-v~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEASL-KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPELQA-VRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHHC-HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHH-HHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhhc-cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhHHH-HHHHHHHHhCccchHHHH
Confidence 3556788888766651 112221 24567788888899877666554321 1233322 1122222 1224566
Q ss_pred HHHHHHHhcCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003249 466 EDLDKATALDP--TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (836)
Q Consensus 466 ~d~~kAi~ldP--~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P 543 (836)
..+...+.-.. .++....--|.++...|++++|+..+.+. .+.++...+-.+|..+++.+.|...++..-+.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e 162 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE 162 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 66655443322 34455566778889999999999987764 3456666677899999999999999999999998
Q ss_pred CchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003249 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (836)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eA 623 (836)
|.... +.|..|..+..-...+. .+...|...-+..|..+.....++.+...+|+|++|
T Consensus 163 D~~l~--------------------qLa~awv~l~~g~e~~~--~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eA 220 (290)
T PF04733_consen 163 DSILT--------------------QLAEAWVNLATGGEKYQ--DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEA 220 (290)
T ss_dssp CHHHH--------------------HHHHHHHHHHHTTTCCC--HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHH
T ss_pred cHHHH--------------------HHHHHHHHHHhCchhHH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHH
Confidence 86421 12344544433322222 357778887777788999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcccch
Q 003249 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR-KAEESIQMKRSF 671 (836)
Q Consensus 624 l~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~-~~~~Ai~l~p~~ 671 (836)
.+.+..|++.+|++++++.|+..+...+|+-.++.+ ..++.-..+|+.
T Consensus 221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999955554 444444455654
No 171
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.63 E-value=1.8e-06 Score=89.05 Aligned_cols=173 Identities=15% Similarity=0.096 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHH
Q 003249 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (836)
Q Consensus 512 ~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~ 591 (836)
+..++..|..+...|+|++|+..|++++...|....
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~-------------------------------------------- 40 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY-------------------------------------------- 40 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT--------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH--------------------------------------------
Confidence 467888899999999999999999999999887631
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhc-----------CCHHHH
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDT-----------SHCEEG 657 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~---eal~~~G~il~~~-----------G~~eeA 657 (836)
-..+.+..|.++.+.|++++|+..+++-++..|+++ ++++.+|.+++.+ +...+|
T Consensus 41 -----------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 41 -----------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp -----------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred -----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 134567778888999999999999999999988875 5789999987654 334578
Q ss_pred HHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 658 LRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSN 737 (836)
Q Consensus 658 l~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~k 737 (836)
+..|++.|..-|+.+- -..+ ...+..+.+.+ +.--...|..|.+.|+|..|+.-|+.
T Consensus 110 ~~~~~~li~~yP~S~y-~~~A-------------~~~l~~l~~~l---------a~~e~~ia~~Y~~~~~y~aA~~r~~~ 166 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEY-AEEA-------------KKRLAELRNRL---------AEHELYIARFYYKRGKYKAAIIRFQY 166 (203)
T ss_dssp HHHHHHHHHH-TTSTT-HHHH-------------HHHHHHHHHHH---------HHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchH-HHHH-------------HHHHHHHHHHH---------HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8888888877776520 0000 00011111111 23345667778888888888888888
Q ss_pred HHcCCc-----hhHHhhHHHHHHhcCCHHH
Q 003249 738 ALKIRH-----TRAHQGLARVHFLKNNKTT 762 (836)
Q Consensus 738 AL~l~~-----~~A~~~la~~~~~~g~~~~ 762 (836)
.++-=| ..|...++.+|..+|..+.
T Consensus 167 v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 167 VIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 777422 2567777777777777663
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.62 E-value=8.5e-07 Score=83.30 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
.+.+++|+++..+|+.++|+..|++++...++..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~---------------------------------------------- 35 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA---------------------------------------------- 35 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch----------------------------------------------
Confidence 3567888888899999999999998888765431
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~---~~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
.-..++.++|.++..+|++++|+..+++++...|+ +.......+.+++.+|+.+||++.+-.++.
T Consensus 36 ---------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 36 ---------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11235667788888899999999999999888888 778888888899999999999887776663
No 173
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.62 E-value=1.1e-06 Score=85.45 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=87.5
Q ss_pred HHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 592 VIYQMLESDAPK---GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 592 ~~~~al~~~P~~---~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~---~eal~~~G~il~~~G~~eeAl~~~~~Ai 665 (836)
.+.+.+...|+. ..+++.+|.++...|++++|...|+.++...|+. +.+.+.++.++..+|++++|+..+++.
T Consensus 33 ~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~- 111 (145)
T PF09976_consen 33 AAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI- 111 (145)
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-
Confidence 456677777887 6778889999999999999999999999988766 457888999999999999999887551
Q ss_pred hcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 666 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 739 (836)
Q Consensus 666 ~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL 739 (836)
. ++.+ .+.++.-+|.+|...|++++|+..|++||
T Consensus 112 ~-~~~~---------------------------------------~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 112 P-DEAF---------------------------------------KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred c-Ccch---------------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 1 1111 14567789999999999999999999986
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.62 E-value=1.3e-07 Score=82.89 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHH
Q 003249 617 LNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTV 694 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~--~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~ 694 (836)
.|+++.|+..++++++..|. +...++.+|.+++.+|+|++|+..+++ ++.+|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~----------------------- 57 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN----------------------- 57 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-----------------------
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-----------------------
Confidence 57899999999999999995 567788899999999999999999988 6655433
Q ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 695 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 738 (836)
Q Consensus 695 i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kA 738 (836)
...+.-+|.++.++|++++|+..|.+|
T Consensus 58 -----------------~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 -----------------PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp -----------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 345667799999999999999999886
No 175
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.61 E-value=6.3e-08 Score=84.99 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~A 664 (836)
...++.+|.++.+.|++++|+..+++ .+.+|.+.+..+.+|.+++++|++++|++.+++|
T Consensus 25 ~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 34567789999999999999999999 9999999999999999999999999999999875
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=6.5e-07 Score=94.99 Aligned_cols=115 Identities=14% Similarity=0.085 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 003249 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS---HCEEGLRKAEESIQ 666 (836)
Q Consensus 590 L~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G---~~eeAl~~~~~Ai~ 666 (836)
+..+..-|..||++++-|..+|-+|..+|++..|...|++|+++.|++++++...|.+++.+. .-.+|...++++++
T Consensus 142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 556777889999999999999999999999999999999999999999999999999998543 45577778888888
Q ss_pred cccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 667 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 667 l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
++|.+ ..+..-+|..++..|+|.+|+..++.-|+..|+
T Consensus 222 ~D~~~----------------------------------------iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 222 LDPAN----------------------------------------IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred cCCcc----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 77665 357788899999999999999999999988654
No 177
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.55 E-value=1.6e-06 Score=94.33 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHH-HHHHHHHhcCCCHHH
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYE-EMTKLIKKARNNASA 780 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~-~~~kaie~~p~~a~A 780 (836)
+..++.++.++..+|+|++|.+.+.+|++.+|. .+..|++.+...+|+..++.+ ..++.-..+|+++..
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 467899999999999999999999999998654 577899999999998855554 444444689998765
No 178
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.51 E-value=4.7e-07 Score=89.19 Aligned_cols=86 Identities=21% Similarity=0.271 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcccchHHHHHHHHHhhccccCCC
Q 003249 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC----------EEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (836)
Q Consensus 620 ~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~----------eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~ 689 (836)
++.|.+.++.+...||.|++++++=|.+|.++.++ ++|++.|++||.|+|+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~------------------ 68 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK------------------ 68 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch------------------
Confidence 67899999999999999999999999999887555 56677777777777765
Q ss_pred ChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHcCCchh
Q 003249 690 CSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ-----------LDLAADCYSNALKIRHTR 745 (836)
Q Consensus 690 ~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~-----------~deAi~~y~kAL~l~~~~ 745 (836)
.+|+.++|++|..++. |++|.++|++|..++|..
T Consensus 69 ----------------------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 69 ----------------------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred ----------------------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3455555555555443 678888888888887765
No 179
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.49 E-value=1.3e-07 Score=81.50 Aligned_cols=74 Identities=22% Similarity=0.359 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHH
Q 003249 635 ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQA 714 (836)
Q Consensus 635 P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a 714 (836)
|+-+.++.++|.++..+|++++|++.|++|+++.... .++.+..+.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------------------------~~~~~~~a~~ 48 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQL---------------------------------GDDHPDTANT 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---------------------------------TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH---------------------------------CCCCHHHHHH
Confidence 4456789999999999999999999999999762111 0112223678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 715 LNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 715 ~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
++|+|.+|..+|++++|++.|++|++|
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999986
No 180
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=7.2e-06 Score=85.87 Aligned_cols=177 Identities=17% Similarity=0.072 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLE-LRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~-~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
.+||+.+.--.+.+|.+-....-+|.+|...++|.+|...|.+.-.+-|...-|- ..+..+.+-+.+.+|++-......
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 5555555555555665555555666666666666666666666655555532222 234445555555555543332211
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCC--CCHHHHHHHHHHHHHcC
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA--PKGVLYFRQSLLLLRLN 618 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P--~~~~~~~~~gl~l~~l~ 618 (836)
- |+ +....-+.+.|. .+++.|-.++-. .++.-| +.+....+.|-++.+.|
T Consensus 107 ~-~~----------------L~~~~lqLqaAI-------kYse~Dl~g~rs----LveQlp~en~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 107 N-PA----------------LHSRVLQLQAAI-------KYSEGDLPGSRS----LVEQLPSENEADGQINLGCLLYKEG 158 (459)
T ss_pred C-HH----------------HHHHHHHHHHHH-------hcccccCcchHH----HHHhccCCCccchhccchheeeccc
Confidence 0 11 111111122221 112222223222 234446 67888899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
++++|+.-|+.|++...-.+-.-++.+.+.+..|+++.|++.-.+.|+
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987766664
No 181
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=0.0032 Score=70.20 Aligned_cols=388 Identities=11% Similarity=0.036 Sum_probs=253.4
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Q 003249 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTK 492 (836)
Q Consensus 417 a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~ 492 (836)
.|.-.|.--..+++...|...+++|+..+..+-..|..-... ....-|...+++|+.+=|.--..|+.--.+=-.+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 455555556667777888888888888776555544433221 1125677789999999999988888887777889
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH-------HHHHHHHHHHHh
Q 003249 493 QNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA-------ASQLHMLVREHI 565 (836)
Q Consensus 493 g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~-------~~~~~~~l~~~~ 565 (836)
|+...|-..|.+=++..|+-.+|..--..=......+.|..-|++-+-..|+-..+. +.+ .......+++..
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wi-kyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWI-KYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHH-HHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999999999999988887655555667889999999999999999864321 111 111111122111
Q ss_pred hh----HhHHHHHHhhh----hccCcccccchHHHHHHHHhcCCCC-HHHHHHHHHHHH-HcCC---HHHHHH-----HH
Q 003249 566 DN----WTIADCWLQLY----DRWSSVDDIGSLSVIYQMLESDAPK-GVLYFRQSLLLL-RLNC---PEAAMR-----SL 627 (836)
Q Consensus 566 ~~----~~~a~~~~~~~----~~~~~~~~~~aL~~~~~al~~~P~~-~~~~~~~gl~l~-~l~~---~~eAl~-----~~ 627 (836)
-. -..+..+.-.+ ++..+++. +-..|.-+|..-|.+ +...+..-...- +-|+ .++++- .|
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ER--ar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYER--ARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 10 01111010011 11111111 233466677777766 222222222222 2232 334442 27
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-hHHHHHHHHH-------hhccccCCCChhHHHHHHH
Q 003249 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS-FEAFFLKAYA-------LADSSQDSSCSSTVVSLLE 699 (836)
Q Consensus 628 ~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~-~~a~~~~a~a-------L~~~~l~~~~~~~~i~~l~ 699 (836)
+..++-||-|-++|+-.=.+.-..|+.+.=.+.|++||.--|- .+-.|++-|. |-. -+..++..-.-++|.
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalye-Ele~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYE-ELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHH
Confidence 8888999999999888777777889999999999999976543 3444444332 211 134444555556677
Q ss_pred HHhcCCcccc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 003249 700 DALKCPSDRL-RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 777 (836)
Q Consensus 700 ~Al~~~~~~~-~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~ 777 (836)
..++..|.-- -.+-.|.-.+.--..+.++..|....-+||-.-|. ...-+.-.+-.+++.+|.--..|.|-|+-.|.|
T Consensus 391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~ 470 (677)
T KOG1915|consen 391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN 470 (677)
T ss_pred HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence 7776655432 12445666666666778888999998888887554 233334446677888999999999999999999
Q ss_pred HHHHHHHH----HccCHHHHHHHHHHhHhcCCCCc
Q 003249 778 ASAYEKRS----EYCDRELTRADLEMVTQLDPLRV 808 (836)
Q Consensus 778 a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~ 808 (836)
-.+|.+=+ .+||.+-|.+-|+-||.-...+.
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 99998875 46999999999999998765554
No 182
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.46 E-value=0.0024 Score=73.50 Aligned_cols=319 Identities=12% Similarity=0.030 Sum_probs=201.6
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC-----h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003249 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLA-----L-ECLELRFCFFLALEDYQAALCDVQAILTL 541 (836)
Q Consensus 469 ~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~-l~P~-----~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l 541 (836)
+-++..||++..-|.+|-. ...|+..+-+..|..|+. .+|. + ..|...|.+|..-|+.+.|..-|++|.+.
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 3578889999999999955 558999999999999996 6773 2 45667889999999999999999999998
Q ss_pred CCCchh----hhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCC------CHHHHHHHH
Q 003249 542 SPDYRM----FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP------KGVLYFRQS 611 (836)
Q Consensus 542 ~P~~~~----~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~------~~~~~~~~g 611 (836)
+=.... .+..++. ..-..+.++.|. .+..+.-.+..-..++.|+.. .|- +...|---+
T Consensus 417 ~y~~v~dLa~vw~~wae------mElrh~~~~~Al---~lm~~A~~vP~~~~~~~yd~~---~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAE------MELRHENFEAAL---KLMRRATHVPTNPELEYYDNS---EPVQARLHRSLKIWSMYA 484 (835)
T ss_pred CccchHHHHHHHHHHHH------HHHhhhhHHHHH---HHHHhhhcCCCchhhhhhcCC---CcHHHHHHHhHHHHHHHH
Confidence 755532 1111111 111122223332 222222222211111222111 111 122333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch--HH----HHHHHHHhhccc
Q 003249 612 LLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EA----FFLKAYALADSS 685 (836)
Q Consensus 612 l~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~--~a----~~~~a~aL~~~~ 685 (836)
.+...+|=++.--..|++.+.+.---|..-.|.|..|-.-.-+++|-+.|++.|.|-|.. .. |..+... .
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~----r 560 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK----R 560 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH----H
Confidence 455567777888889999999999999999999999999999999999999999998532 11 2233332 1
Q ss_pred cCCCChhHHHHHHHHHhcCCc-cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-Cchh--HHh--hHHHHHHhcCC
Q 003249 686 QDSSCSSTVVSLLEDALKCPS-DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-RHTR--AHQ--GLARVHFLKNN 759 (836)
Q Consensus 686 l~~~~~~~~i~~l~~Al~~~~-~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l-~~~~--A~~--~la~~~~~~g~ 759 (836)
....+.+-+-.++|+|++..| ... -..|.-.+..-.+-|--..|++.|++|-.- ++.. ..+ .+.++-..-|-
T Consensus 561 ygg~klEraRdLFEqaL~~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv 638 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCPPEHA--KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGV 638 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 222334455678999996443 321 133333444445568889999999998653 3331 111 12222222231
Q ss_pred HHHHHHHHHHHHHhcCCC-HHHHHHH-----HHccCHHHHHHHHHHhHhc-CCCCc
Q 003249 760 KTTAYEEMTKLIKKARNN-ASAYEKR-----SEYCDRELTRADLEMVTQL-DPLRV 808 (836)
Q Consensus 760 ~~~A~~~~~kaie~~p~~-a~Ay~~r-----~~~~~~~~A~~D~~~Ai~l-~P~~~ 808 (836)
-.--+-|.|||+.-|+. +..+--| ..+|+.+-|.+-|.-.-++ ||...
T Consensus 639 -~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~ 693 (835)
T KOG2047|consen 639 -PRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVT 693 (835)
T ss_pred -cccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCC
Confidence 11225789999988876 6666666 4578889998888876654 55443
No 183
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.42 E-value=5.3e-06 Score=77.93 Aligned_cols=98 Identities=22% Similarity=0.124 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 003249 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (836)
Q Consensus 480 ~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~----~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~ 555 (836)
.+.+++|.++...|+.++||..|+++++..++ ..++..+|..+..+|++++|+.-+++++.-.|+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~--------- 72 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE--------- 72 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---------
Confidence 57889999999999999999999999998764 25677899999999999999999999999888742
Q ss_pred HHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003249 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (836)
Q Consensus 556 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~ 632 (836)
.+..+....++++..+|++++|++.+-.++.
T Consensus 73 ----------------------------------------------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 ----------------------------------------------LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----------------------------------------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1223344567788999999999999888775
No 184
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.38 E-value=6.9e-05 Score=80.56 Aligned_cols=232 Identities=16% Similarity=0.153 Sum_probs=137.0
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHhc-cch-hhHh---hHHHHHHhcCCHHHHHHHHHHhHhccCC------chHHHHH
Q 003249 386 FHQLGCVRLLRKEYDEAEHLFEAAVNA-GHI-YSIA---GLARLGYIKGHKLWAYEKLNSVISSVTP------LGWMYQE 454 (836)
Q Consensus 386 ~~~lG~~~~~~g~y~eAi~~f~~Al~l-~~~-~a~~---~la~~~~~~G~~~~A~~~~~~ai~~~~~------~~~ay~~ 454 (836)
...-|.-++...++++|+.-+.+.+.. +.. .-.. .++.+...+|.+.+++..--..|..... .-.+|.+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln 88 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN 88 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777888888888777663 211 1122 2333456666666665553333332211 0111211
Q ss_pred hhhcCChhhHHHHHHHHHh-------cCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hHHH
Q 003249 455 RSLYCEGDKRWEDLDKATA-------LDPTLS-----YPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECL 515 (836)
Q Consensus 455 r~~~~~~~eAi~d~~kAi~-------ldP~~~-----~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-------~~~~ 515 (836)
. .++.|.+.+|+|++. +--+.+ .....+|++..-++.++.+++.|++|+++.-+ .+.+
T Consensus 89 l---ar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 89 L---ARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred H---HHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 1 111233333444332 222222 34555677777777777777777777766432 1334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHH
Q 003249 516 ELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQ 595 (836)
Q Consensus 516 ~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~ 595 (836)
..+|.+|..+.|+++|+-.-.+|.+|--++. .+.|.. -++
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~------------------l~d~~~----------------------kyr 205 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYG------------------LKDWSL----------------------KYR 205 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC------------------cCchhH----------------------HHH
Confidence 5567777777777777776666666644331 111111 111
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 596 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 596 al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~------P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
..+.+..+..|..+|+...|+++.+.|-++. |-.+.-+.-.|.||...|+.|.|..-|++|...-
T Consensus 206 --------~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 206 --------AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred --------HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 2345788889999999999999998887753 3334445678999999999999999999998753
No 185
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.36 E-value=1.4e-06 Score=86.01 Aligned_cols=89 Identities=13% Similarity=0.147 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCC---
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALED--- 527 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~----------~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~--- 527 (836)
+.|.+.++.+...||.+++++++.|.+|.++.+ +++||+-|+.||.++|+ +++++++|.+|..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 678888999999999999999999999988744 57899999999999998 6899999999877644
Q ss_pred --------HHHHHHHHHHHHhhCCCchhhhh
Q 003249 528 --------YQAALCDVQAILTLSPDYRMFEG 550 (836)
Q Consensus 528 --------~~~Ai~d~~~al~l~P~~~~~~~ 550 (836)
|++|..+|++|..++|++..|..
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 89999999999999999976543
No 186
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.33 E-value=1.4e-06 Score=73.99 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=58.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH
Q 003249 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (836)
Q Consensus 611 gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~ 672 (836)
..++.+.+++++|++.++++++++|+++..+..+|.+++.+|++++|++++++++++.|+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 34678999999999999999999999999999999999999999999999999999999773
No 187
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.28 E-value=2.3e-06 Score=72.56 Aligned_cols=62 Identities=27% Similarity=0.325 Sum_probs=51.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 486 ASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 486 g~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
..++...+++++|+..++++++++|+ +..+..+|.++..+|++++|+++|+++++++|+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 45778888888888888888888886 567778888888888888888888888888888754
No 188
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.00042 Score=74.42 Aligned_cols=330 Identities=15% Similarity=0.102 Sum_probs=198.7
Q ss_pred hhccchHHHHHHHHHHHhccc---hhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCc-------hHHHHHhhhcCChhh
Q 003249 394 LLRKEYDEAEHLFEAAVNAGH---IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPL-------GWMYQERSLYCEGDK 463 (836)
Q Consensus 394 ~~~g~y~eAi~~f~~Al~l~~---~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~-------~~ay~~r~~~~~~~e 463 (836)
+...+|..|+..++-....+. ......+|.+++..|++++|+..|.-+....... +-.+.-.|.| .+
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y---~e 109 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY---IE 109 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH---HH
Confidence 445678888888887766532 2345667889999999999999988777654333 3333334444 55
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003249 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (836)
Q Consensus 464 Ai~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P 543 (836)
|.+.- +..|+++---.-+-.+-.++++-++ +..|..-++-- .+.-..++.+....-.|++||+-|.++|.-+|
T Consensus 110 A~~~~----~ka~k~pL~~RLlfhlahklndEk~-~~~fh~~LqD~--~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 110 AKSIA----EKAPKTPLCIRLLFHLAHKLNDEKR-ILTFHSSLQDT--LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred HHHHH----hhCCCChHHHHHHHHHHHHhCcHHH-HHHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 54433 3346555433333333334444333 33344333211 11122355666666789999999999999999
Q ss_pred CchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCH-
Q 003249 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL--NCP- 620 (836)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l--~~~- 620 (836)
++......++.. +-..+-|+-+ -.++.--|..-|+++.+...++-.+.++ |+.
T Consensus 183 ey~alNVy~ALC------yyKlDYydvs------------------qevl~vYL~q~pdStiA~NLkacn~fRl~ngr~a 238 (557)
T KOG3785|consen 183 EYIALNVYMALC------YYKLDYYDVS------------------QEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTA 238 (557)
T ss_pred hhhhhHHHHHHH------HHhcchhhhH------------------HHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchh
Confidence 985432222211 1122222222 2334444566677777777666555442 221
Q ss_pred --------------------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 621 --------------------------------EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 621 --------------------------------~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
+.|++.+-....+ -|||..++..-+.++|+.+||+.... .++
T Consensus 239 e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYyL~q~dVqeA~~L~K---dl~ 312 (557)
T KOG3785|consen 239 EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYYLNQNDVQEAISLCK---DLD 312 (557)
T ss_pred HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeeecccccHHHHHHHHh---hcC
Confidence 2233333333333 36788999999999999999987654 567
Q ss_pred cch-HHHHHHHHHhhccccCCCChhHHHHHH--------HHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 669 RSF-EAFFLKAYALADSSQDSSCSSTVVSLL--------EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 739 (836)
Q Consensus 669 p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~l--------~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL 739 (836)
|.. ..|-.||...+..|...++-+ .++.- +-|++|..-.- --..++.++-..+||+-+... +.+
T Consensus 313 PttP~EyilKgvv~aalGQe~gSre-HlKiAqqffqlVG~Sa~ecDTIpG-----RQsmAs~fFL~~qFddVl~Yl-nSi 385 (557)
T KOG3785|consen 313 PTTPYEYILKGVVFAALGQETGSRE-HLKIAQQFFQLVGESALECDTIPG-----RQSMASYFFLSFQFDDVLTYL-NSI 385 (557)
T ss_pred CCChHHHHHHHHHHHHhhhhcCcHH-HHHHHHHHHHHhcccccccccccc-----hHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 775 457889988777775555422 22222 22444433221 234566677777898877554 445
Q ss_pred c---CCchhHHhhHHHHHHhcCCHHHHHHHHHHH
Q 003249 740 K---IRHTRAHQGLARVHFLKNNKTTAYEEMTKL 770 (836)
Q Consensus 740 ~---l~~~~A~~~la~~~~~~g~~~~A~~~~~ka 770 (836)
+ .+++...+|+|.++...|.+.+|-+.|-+.
T Consensus 386 ~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 386 ESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence 4 366778899999999999999998777554
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=98.26 E-value=9.7e-06 Score=79.36 Aligned_cols=106 Identities=4% Similarity=-0.101 Sum_probs=85.7
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHH
Q 003249 596 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 675 (836)
Q Consensus 596 al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~ 675 (836)
...+.++.-+..|..|.-+...|++++|...|+-..-++|.+++.+..+|.++..+|+|++|+..|-.|..+++++
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d---- 104 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND---- 104 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC----
Confidence 3445555666777888888888999999999999888999998888888999988999999988888887665433
Q ss_pred HHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 676 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 676 ~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+...+..|..|..+|+.+.|+.||.-|++-
T Consensus 105 ------------------------------------p~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 105 ------------------------------------YRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ------------------------------------CCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 234678888888889999999988888884
No 190
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.25 E-value=6e-05 Score=81.05 Aligned_cols=244 Identities=14% Similarity=0.104 Sum_probs=154.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHhcCCHHHHHHHH----HHHHhhCCCchh--hhh
Q 003249 481 PYMYRASSLMTKQNVEAALAEINRILGFKLALE----CLELRFCFFLALEDYQAALCDV----QAILTLSPDYRM--FEG 550 (836)
Q Consensus 481 ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~----~~~~rg~~~~~lg~~~~Ai~d~----~~al~l~P~~~~--~~~ 550 (836)
-.+-.|.-++...+++.||..+.+.+.--.+.. .+-....+..++|.|++++..- +-+.+++-.... ++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888899999999999886433321 1222345678888888887543 223333222211 111
Q ss_pred hHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003249 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (836)
Q Consensus 551 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~A 630 (836)
+++. -++...++.++..+-+.--..+. .+. ..+|. ..+.-.|.+.+.++.++.+++.|++|
T Consensus 88 nlar------~~e~l~~f~kt~~y~k~~l~lpg-t~~----------~~~~g--q~~l~~~~Ahlgls~fq~~Lesfe~A 148 (518)
T KOG1941|consen 88 NLAR------SNEKLCEFHKTISYCKTCLGLPG-TRA----------GQLGG--QVSLSMGNAHLGLSVFQKALESFEKA 148 (518)
T ss_pred HHHH------HHHHHHHhhhHHHHHHHHhcCCC-CCc----------ccccc--hhhhhHHHHhhhHHHHHHHHHHHHHH
Confidence 1111 11122222222111110000000 000 01122 34455788888999999999999999
Q ss_pred HHcCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcC
Q 003249 631 RQHAASDHE------RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (836)
Q Consensus 631 l~l~P~~~e------al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~ 704 (836)
.++..+..+ +++.+|..+-.+.++++|+-...+|.+|-.+.. ++.-+.. |
T Consensus 149 ~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~-------------l~d~~~k-----y------ 204 (518)
T KOG1941|consen 149 LRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG-------------LKDWSLK-----Y------ 204 (518)
T ss_pred HHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC-------------cCchhHH-----H------
Confidence 987655443 578899999999999999988888887754431 0000000 0
Q ss_pred CccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--------chhHHhhHHHHHHhcCCHHHHHHHHHHHHHh
Q 003249 705 PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--------HTRAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (836)
Q Consensus 705 ~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~--------~~~A~~~la~~~~~~g~~~~A~~~~~kaie~ 773 (836)
...+++.++.+|..+|++-.|.++.++|.+|. +++-...+|.+|..+|+.+.||..|++|+..
T Consensus 205 ------r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 205 ------RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred ------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 13478899999999999999999999997762 2345578899999999999999999998844
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.23 E-value=3.1e-06 Score=70.67 Aligned_cols=60 Identities=15% Similarity=0.106 Sum_probs=55.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHH
Q 003249 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (836)
Q Consensus 614 l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a 673 (836)
+...|++++|++.|+++++.+|+++++++.+|.++..+|++++|.+.+++++..+|+++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 357899999999999999999999999999999999999999999999999999998743
No 192
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.23 E-value=2.5e-05 Score=74.92 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~----~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
+..++..|...++.|+|++|+..|+.+..--|- ..+-..+|.+|++.|+|++|+..+++-|+|+|++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 456888999999999999999999999998883 356677899999999999999999999999999854
No 193
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.21 E-value=3e-05 Score=87.29 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=96.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhh
Q 003249 488 SLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (836)
Q Consensus 488 ~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~ 567 (836)
.+...+++++|+..|++..+.+|+.. ...+.++...++..+|++...++|+.+|+.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------------------- 233 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDPEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQD---------------------- 233 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCCC----------------------
Confidence 34556788899999988888887643 345677777777777777777777665544
Q ss_pred HhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003249 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (836)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~i 647 (836)
+.+...++..+.+.++++.|+...++|+++.|++-+.|+.++.+
T Consensus 234 ------------------------------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~ 277 (395)
T PF09295_consen 234 ------------------------------------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAEC 277 (395)
T ss_pred ------------------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45556677788999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccc
Q 003249 648 LYDTSHCEEGLRKAEESIQMKR 669 (836)
Q Consensus 648 l~~~G~~eeAl~~~~~Ai~l~p 669 (836)
|..+|++++|+...+ ++-..|
T Consensus 278 Yi~~~d~e~ALlaLN-s~Pm~~ 298 (395)
T PF09295_consen 278 YIQLGDFENALLALN-SCPMLT 298 (395)
T ss_pred HHhcCCHHHHHHHHh-cCcCCC
Confidence 999999999997666 443333
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=98.21 E-value=1.8e-05 Score=77.52 Aligned_cols=101 Identities=9% Similarity=-0.095 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
+..|..|.-++..|++++|...|+-...++|.+.
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~---------------------------------------------- 71 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP---------------------------------------------- 71 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH----------------------------------------------
Confidence 4556667777777777777777776666655543
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~ 672 (836)
..|+.+|.++..+++|++|+..|..|.-++++||...+..|..+..+|+.++|..+|+.++. +|...
T Consensus 72 ------------~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 72 ------------DYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 23444555666667777777777777777777777777777777777777777777777776 44443
No 195
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.17 E-value=2.3e-06 Score=95.39 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=84.0
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (836)
Q Consensus 460 ~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~a 538 (836)
..+.|+.-|.|||+++|+.+..|.+|+.++...+.+.+|+.+.++||+++|. ..+|+.||.+...++++.+|+.+|++.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 4478888899999999999999999999999999999999999999999998 478888999999999999999999999
Q ss_pred HhhCCCchhhhh
Q 003249 539 LTLSPDYRMFEG 550 (836)
Q Consensus 539 l~l~P~~~~~~~ 550 (836)
..+.|+...+.-
T Consensus 99 ~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 99 KKLAPNDPDATR 110 (476)
T ss_pred hhcCcCcHHHHH
Confidence 999999976543
No 196
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.16 E-value=1.9e-06 Score=74.19 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH----A---ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 601 P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l----~---P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
|+-+.+++++|.++..+|++++|+..|++++++ . |.-+.+++++|.++..+|++++|++.|++|+++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 344678999999999999999999999999965 2 2335679999999999999999999999999863
No 197
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.15 E-value=0.00013 Score=76.10 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=62.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~----~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
-+.-+++-|...++.|++++|+..|+++....|. ..+....+.++.+.++|++|+...++=+++.|++..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 3567899999999999999999999999999994 356777899999999999999999999999999843
No 198
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.14 E-value=0.035 Score=64.30 Aligned_cols=411 Identities=10% Similarity=0.011 Sum_probs=225.0
Q ss_pred HHHHHHhhccchHHHHHHHHHHHhc----cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHh-hhcCChh
Q 003249 388 QLGCVRLLRKEYDEAEHLFEAAVNA----GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER-SLYCEGD 462 (836)
Q Consensus 388 ~lG~~~~~~g~y~eAi~~f~~Al~l----~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r-~~~~~~~ 462 (836)
.-+..+..+|+...-...|.+||.. .|.+.|--.-......|-++.++..|.+-+...|....-|..- ....+.+
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchH
Confidence 3445567778888888888887764 3444554333333445556677777777777777554444332 1223335
Q ss_pred hHHHHHHHHHhcC-------CCChHHHHHHHHHHHhcCCHHHH---HHHHHHHHhcCCCh--HHHHHHHHHHHhcCCHHH
Q 003249 463 KRWEDLDKATALD-------PTLSYPYMYRASSLMTKQNVEAA---LAEINRILGFKLAL--ECLELRFCFFLALEDYQA 530 (836)
Q Consensus 463 eAi~d~~kAi~ld-------P~~~~ay~~rg~~l~~~g~~~eA---i~~~~kai~l~P~~--~~~~~rg~~~~~lg~~~~ 530 (836)
+|-+-|.+.+.-+ |.+...|.-+-....+.-+.-.. -+.++..|..-|+- ..|..++.-|...|+++.
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ek 266 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEK 266 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 5555555544322 34444444444443332221111 11233334333431 335556777888899999
Q ss_pred HHHHHHHHHhhCCCchh------hhhhHHHH--HHHHHHH--HHhh-hH-hHHHHHHhhhhccCcccccchHHHHHHHHh
Q 003249 531 ALCDVQAILTLSPDYRM------FEGRVAAS--QLHMLVR--EHID-NW-TIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (836)
Q Consensus 531 Ai~d~~~al~l~P~~~~------~~~~~~~~--~~~~~l~--~~~~-~~-~~a~~~~~~~~~~~~~~~~~aL~~~~~al~ 598 (836)
|-.-|+++|+---.... +|....-. +....+. +... .+ ..-++.++.++...+ ...+-.-.-+|.
T Consensus 267 arDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~---rr~~~lNsVlLR 343 (835)
T KOG2047|consen 267 ARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN---RRPLLLNSVLLR 343 (835)
T ss_pred HHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh---ccchHHHHHHHh
Confidence 99888888875433322 11111000 0000000 0000 00 011111221111111 111223345678
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cch
Q 003249 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ-HAASD-----HERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSF 671 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~-l~P~~-----~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~-p~~ 671 (836)
.+|++...|.++..++ .+++.+-+..|..|++ .+|.- +..|...|..|-+.|+.+.|-..|++|.+.+ +..
T Consensus 344 Qn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred cCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 8999999999998876 6778888888998885 45533 4568889999999999999999999999876 443
Q ss_pred H--HHHHHHHHhhccccCCCChhHHHHHHHHHhcCCcccc---------------chHHHHHHHHHHHHhcCCHHHHHHH
Q 003249 672 E--AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL---------------RKGQALNNLGSVYVDCGQLDLAADC 734 (836)
Q Consensus 672 ~--a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~---------------~~~~a~~nlG~~y~~~g~~deAi~~ 734 (836)
+ +--+.+ -++.-++.+..+.+..++..|...|.... +....|.-....-...|-++.-...
T Consensus 422 ~dLa~vw~~--waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 422 EDLAEVWCA--WAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred HHHHHHHHH--HHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 2 111122 22444566666777777777766554421 0113444555555556666666677
Q ss_pred HHHHHcCC--chhHHhhHHHHHHhcCCHHHHHHHHHHHHHhc--CCCHHHHHH---H--HHcc--CHHHHHHHHHHhHhc
Q 003249 735 YSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKA--RNNASAYEK---R--SEYC--DRELTRADLEMVTQL 803 (836)
Q Consensus 735 y~kAL~l~--~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~--p~~a~Ay~~---r--~~~~--~~~~A~~D~~~Ai~l 803 (836)
|++.|+++ .+...-|.|..+....-++++..-|+|-|.+- |+--+-|+- . +.|| ..+-|..-|++|++.
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 77776654 23445566666666666677776666666543 332222211 1 2333 345566666777766
Q ss_pred CC
Q 003249 804 DP 805 (836)
Q Consensus 804 ~P 805 (836)
=|
T Consensus 580 Cp 581 (835)
T KOG2047|consen 580 CP 581 (835)
T ss_pred CC
Confidence 65
No 199
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=9.9e-06 Score=82.88 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC--------Cc------------hhHHhhHHHHHHhcCCHHHHHHHHHHHH
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALKI--------RH------------TRAHQGLARVHFLKNNKTTAYEEMTKLI 771 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~l--------~~------------~~A~~~la~~~~~~g~~~~A~~~~~kai 771 (836)
..++...|+-++.+|+|.||..+|+.|+.. +| +..+.|...+++..|+|-++++..+.++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999753 22 2457899999999999999999999999
Q ss_pred HhcCCCHHHHHHHHH----ccCHHHHHHHHHHhHhcCCCCcccc
Q 003249 772 KKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPY 811 (836)
Q Consensus 772 e~~p~~a~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P~~~~~y 811 (836)
...|.|..||++|+. .=+.++|.+||.++++|||.-+...
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 999999999999953 3478999999999999999866544
No 200
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.07 E-value=0.0003 Score=73.54 Aligned_cols=174 Identities=13% Similarity=0.162 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH----HH
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE----AF 674 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~---eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~----a~ 674 (836)
..+..+++.|+..++-|++++|.+.|+......|..+ .+.+.++.++++.|++++|+...++-|.+.|..+ ++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3577899999999999999999999999999888775 5789999999999999999999999999998763 68
Q ss_pred HHHHHHh----hccccCCCChhHHHHHHHHHhcCCccccchHH------------HH--HHHHHHHHhcCCHHHHHHHHH
Q 003249 675 FLKAYAL----ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ------------AL--NNLGSVYVDCGQLDLAADCYS 736 (836)
Q Consensus 675 ~~~a~aL----~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~------------a~--~nlG~~y~~~g~~deAi~~y~ 736 (836)
|.++... .+...|+.....++..+.+.++..|...=.++ +. ...|..|.+.|.+..|+.-++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 8887653 34446677777778888888877776542111 22 345677888888888888888
Q ss_pred HHHcCC-----chhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 003249 737 NALKIR-----HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (836)
Q Consensus 737 kAL~l~-----~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~ 776 (836)
..++-= ...|+..+..+|..+|-.++| +...++|+.|+-
T Consensus 192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a-~~~~~vl~~N~p 235 (254)
T COG4105 192 EVLENYPDTSAVREALARLEEAYYALGLTDEA-KKTAKVLGANYP 235 (254)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhCChHHH-HHHHHHHHhcCC
Confidence 887741 125777777788888887777 456677776633
No 201
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.05 E-value=3.5e-06 Score=93.96 Aligned_cols=100 Identities=24% Similarity=0.220 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhH--HhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHc----
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHTRA--HQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY---- 787 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A--~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~---- 787 (836)
-+.+.++-++.-+.|+.|+..|.|||+++|+-| ..+++.++.+.+++..|+.|..+|||.+|.+..+|+.|+.+
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 456778888889999999999999999988644 57888999999999999999999999999999999999654
Q ss_pred cCHHHHHHHHHHhHhcCCCCcccchh
Q 003249 788 CDRELTRADLEMVTQLDPLRVYPYRY 813 (836)
Q Consensus 788 ~~~~~A~~D~~~Ai~l~P~~~~~y~~ 813 (836)
+.+.+|..||++...+.|+++++-+.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 67899999999999999999877554
No 202
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.01 E-value=1.1e-05 Score=67.25 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=35.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 003249 490 MTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (836)
Q Consensus 490 ~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~ 546 (836)
++.|++++|+..|+++++.+|+ .++++.+|.+|.+.|++++|.+.+++++..+|++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 4556666666666666666664 45555566666666666666666666666666653
No 203
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.01 E-value=3.5e-06 Score=97.61 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=57.3
Q ss_pred CCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCc------------ceeEecCCCCCHHHHHHHHHhhcc
Q 003249 177 GDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC------------EDIDLSENNISPSGLRIISDFSVT 244 (836)
Q Consensus 177 ~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~------------~~I~l~~~~is~~~~~~ll~f~Yt 244 (836)
...-+.||||.||++.|+|||.||+++|++|+.+|...-.-|.. .+|.+. .|.|..|+.+|+|+||
T Consensus 554 ~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve--~i~p~mfe~lL~~iYt 631 (1267)
T KOG0783|consen 554 YKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVE--DIPPLMFEILLHYIYT 631 (1267)
T ss_pred cccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeec--cCCHHHHHHHHHHHhc
Confidence 34567899999999999999999999999999999765443333 334445 6999999999999999
Q ss_pred CcCC
Q 003249 245 GSLN 248 (836)
Q Consensus 245 g~l~ 248 (836)
+++-
T Consensus 632 dt~~ 635 (1267)
T KOG0783|consen 632 DTLL 635 (1267)
T ss_pred cccc
Confidence 9653
No 204
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00016 Score=81.40 Aligned_cols=86 Identities=21% Similarity=0.244 Sum_probs=77.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChh
Q 003249 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (836)
Q Consensus 613 ~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~ 692 (836)
++...++..+|++.+.++++.+|.+++.+...+..+.+.|+++.|+...++|+++.|+.
T Consensus 209 v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~--------------------- 267 (395)
T PF09295_consen 209 VYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSE--------------------- 267 (395)
T ss_pred HHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh---------------------
Confidence 44556778899999999999999999999999999999999999999999999988865
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 738 (836)
Q Consensus 693 ~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kA 738 (836)
-.+|..|+.+|..+|++++|+...+.+
T Consensus 268 -------------------f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 268 -------------------FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred -------------------HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 358999999999999999999888744
No 205
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.99 E-value=3.6e-06 Score=90.02 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 461 ~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
.++|++.|..||+++|.++..|..||.|+.++++...||.+++.||+++|+. .-|-.||.+...+|++++|-.|++.|.
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 3889999999999999999999999999999999999999999999999985 557789999999999999999999999
Q ss_pred hhCCCc
Q 003249 540 TLSPDY 545 (836)
Q Consensus 540 ~l~P~~ 545 (836)
+++=+-
T Consensus 210 kld~dE 215 (377)
T KOG1308|consen 210 KLDYDE 215 (377)
T ss_pred hccccH
Confidence 998654
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.99 E-value=9.9e-05 Score=70.82 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHH
Q 003249 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN 717 (836)
Q Consensus 638 ~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~n 717 (836)
+..++..|.-.++.|+|++|++.|+....--|..+ -..++...
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-------------------------------------ya~qAqL~ 52 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-------------------------------------YAEQAQLD 52 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-------------------------------------ccHHHHHH
Confidence 44566777777777777777776666654433321 01356667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCch-----hHHhhHHHHHHhcCC---------------HHHHHHHHHHHHHhcCCC
Q 003249 718 LGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNN---------------KTTAYEEMTKLIKKARNN 777 (836)
Q Consensus 718 lG~~y~~~g~~deAi~~y~kAL~l~~~-----~A~~~la~~~~~~g~---------------~~~A~~~~~kaie~~p~~ 777 (836)
+|.+|.+.|++++|++.|++-|+++|+ .|++-+|.++..+.. ...|+.+|.+.|+.-||+
T Consensus 53 l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 777777777777777777777777553 466666666666543 455666666666666665
Q ss_pred H
Q 003249 778 A 778 (836)
Q Consensus 778 a 778 (836)
.
T Consensus 133 ~ 133 (142)
T PF13512_consen 133 E 133 (142)
T ss_pred h
Confidence 4
No 207
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.98 E-value=0.00012 Score=77.12 Aligned_cols=106 Identities=13% Similarity=0.025 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 003249 481 PYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (836)
Q Consensus 481 ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~----~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~ 556 (836)
..|+-|.-++..|+|.+|...|..-|+--|+ +.++|.+|.+++.+|+|++|...|..+++-.|+.
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s----------- 211 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS----------- 211 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC-----------
Confidence 3788888889999999999999999999995 4788999999999999999999999999988876
Q ss_pred HHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003249 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (836)
Q Consensus 557 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~ 636 (836)
|+-+++++.+|.++.++|+.++|-..|+++++--|+
T Consensus 212 --------------------------------------------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 212 --------------------------------------------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred --------------------------------------------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 445666677777777777777777777777777776
Q ss_pred CHHHH
Q 003249 637 DHERL 641 (836)
Q Consensus 637 ~~eal 641 (836)
...+-
T Consensus 248 t~aA~ 252 (262)
T COG1729 248 TDAAK 252 (262)
T ss_pred CHHHH
Confidence 66553
No 208
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.97 E-value=2.8e-05 Score=83.46 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=103.3
Q ss_pred EEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCc----ceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHHHHHH
Q 003249 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC----EDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (836)
Q Consensus 184 V~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~----~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v~~lL 259 (836)
|.+-++++ .|||+.++. +..||+.||.|+|.|++. ....++ +.+..+.+.++.|+|+++.+ +.++...+++
T Consensus 295 iql~~~~R-yP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp--~~~~~vveI~lr~lY~d~td-i~~~~A~dvl 369 (516)
T KOG0511|consen 295 IQLPEEDR-YPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLP--SLADVVVEIDLRNLYCDQTD-IIFDVASDVL 369 (516)
T ss_pred cccccccc-ccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccc--hHHHHHHHHHHHHhhccccc-chHHHHhhHH
Confidence 44444444 999999985 568999999999999652 333344 57788999999999999999 9999999999
Q ss_pred HHHHHHhHH--H-HHHHHHHHHHhhhC--CHHHHHHHHHHHHHcCChhhHHHHHHHHHhhcccCCChHHHHHHHhcc
Q 003249 260 IFANKFCCE--R-LKDACDRKLASLVA--SREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLNDERVVEIFSHA 331 (836)
Q Consensus 260 ~aA~~~c~~--~-L~~~c~~~l~~~v~--~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~~l~~~~~~~ll~~~ 331 (836)
-+|++.-.+ . |+..-...++.... ..=++..++.++.+-.+..|......++.+++...+.+|+..+.+...
T Consensus 370 l~ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s 446 (516)
T KOG0511|consen 370 LFADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTS 446 (516)
T ss_pred HHhhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhc
Confidence 999996443 2 55554444443221 122477788888888888888777777777776666667666655443
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.95 E-value=0.00065 Score=67.29 Aligned_cols=129 Identities=14% Similarity=0.089 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhcc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQ-HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 684 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~-l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~ 684 (836)
-++++|..+.++|++.||...|++++. +-.+|+..+..++.+.+..|++.+|....++..+-+|.+
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~------------- 157 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF------------- 157 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-------------
Confidence 357888899999999999999999985 889999999999999999999999999999998877765
Q ss_pred ccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc-hhHHhhHHHHHHhcCCHHHH
Q 003249 685 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-TRAHQGLARVHFLKNNKTTA 763 (836)
Q Consensus 685 ~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~-~~A~~~la~~~~~~g~~~~A 763 (836)
+.++.+.-+|.+|..+|++.+|...|+.|+.--| ..+....+..+..+|+.++|
T Consensus 158 -------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 158 -------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred -------------------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHH
Confidence 1134566788899999999999999999998744 35666777888889988888
Q ss_pred HHHHHHHHH
Q 003249 764 YEEMTKLIK 772 (836)
Q Consensus 764 ~~~~~kaie 772 (836)
-+.+-.+.+
T Consensus 213 ~aq~~~v~d 221 (251)
T COG4700 213 NAQYVAVVD 221 (251)
T ss_pred HHHHHHHHH
Confidence 877766554
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.92 E-value=0.0011 Score=65.62 Aligned_cols=143 Identities=13% Similarity=0.076 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF--KLALECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l--~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
+..+....+.++..|+..+ .+.+|+.+.++|++.||...|.+++.= .-++..+..++.+.+..++..+|....++..
T Consensus 73 ~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 73 ERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred hHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 4444444555555565433 345666666666666666666666541 1123334445556666666666666555555
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003249 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (836)
Q Consensus 540 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~ 619 (836)
+-+|.. . .+..+...|-+|..+|+
T Consensus 152 e~~pa~-----------------------------------------------------r---~pd~~Ll~aR~laa~g~ 175 (251)
T COG4700 152 EYNPAF-----------------------------------------------------R---SPDGHLLFARTLAAQGK 175 (251)
T ss_pred hcCCcc-----------------------------------------------------C---CCCchHHHHHHHHhcCC
Confidence 555432 2 22333344556666777
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAE 662 (836)
Q Consensus 620 ~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~ 662 (836)
++.|...|+.++...|+ +++-.+.|..+..+|+.+||-+-|.
T Consensus 176 ~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 176 YADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred chhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHH
Confidence 77777777777777664 4455555666667777666655443
No 211
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.90 E-value=1.1e-05 Score=58.15 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=29.5
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003249 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (836)
Q Consensus 627 ~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl 658 (836)
|++||+++|+++++|+++|++|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78899999999999999999999999999986
No 212
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.90 E-value=1.1e-05 Score=58.17 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=30.7
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHH
Q 003249 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALA 500 (836)
Q Consensus 468 ~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~ 500 (836)
|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999873
No 213
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=3.9e-05 Score=78.49 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
..|+..|.+||.++|+.+..|.||+..+++.++++.+..+..+|++++|| ..+++.+|........|++||..+++|..
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999 47788899999999999999999999966
Q ss_pred hC
Q 003249 541 LS 542 (836)
Q Consensus 541 l~ 542 (836)
+-
T Consensus 107 l~ 108 (284)
T KOG4642|consen 107 LL 108 (284)
T ss_pred HH
Confidence 54
No 214
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.80 E-value=0.013 Score=69.97 Aligned_cols=204 Identities=15% Similarity=0.074 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
..|+++.++.++..|+...+-...|.++.++|+.++|...++..-.+.|++ ..+...-.+|..+|++++|...|+++++
T Consensus 26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 567777777777777777777777777777777777775555554555543 3455566677777777777777777777
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccc----------------------c-chH--HHHHH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDD----------------------I-GSL--SVIYQ 595 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~----------------------~-~aL--~~~~~ 595 (836)
-+|+... ...+...+....-|..++ ...+++|-..++-.. . -++ ..+.+
T Consensus 106 ~~P~eel-l~~lFmayvR~~~yk~qQ-----kaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 106 KYPSEEL-LYHLFMAYVREKSYKKQQ-----KAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred hCCcHHH-HHHHHHHHHHHHHHHHHH-----HHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 7777311 111111111222222111 112233332222111 0 011 23445
Q ss_pred HHhcC-CCCHHH-HHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 596 MLESD-APKGVL-YFRQSLLLLRLNCPEAAMRSL-QLARQHAASDHER-LVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 596 al~~~-P~~~~~-~~~~gl~l~~l~~~~eAl~~~-~~Al~l~P~~~ea-l~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.++.. +-...+ ..-.-.++..+|.+++|++.+ ....+..+..+.. -+..+..+..++++.+=.+...+.+.-.+++
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 55554 211111 112224667899999999998 3333444444444 4555666778999999999999999888875
No 215
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00047 Score=70.92 Aligned_cols=119 Identities=19% Similarity=0.184 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhH-hccCCchHHHHHhhhcCChh
Q 003249 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVI-SSVTPLGWMYQERSLYCEGD 462 (836)
Q Consensus 384 ~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai-~~~~~~~~ay~~r~~~~~~~ 462 (836)
.++++.|+-++..|+|+||+..|+.||.. +...+ .-.|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~-------------------------l~~L~lkEkP~--------------- 218 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIIC-------------------------LRNLQLKEKPG--------------- 218 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHH-------------------------HHHHHhccCCC---------------
Confidence 47889999999999999999999888652 10000 00110
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003249 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (836)
Q Consensus 463 eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l 541 (836)
=-++++|+......+.|...++...|+|-++++..+.++...|. ..+|+.||.++...-+.++|.+||.++|++
T Consensus 219 -----e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 219 -----EPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred -----ChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 12456677777778888888999999999999999999999996 478888999999999999999999999999
Q ss_pred CCCchh
Q 003249 542 SPDYRM 547 (836)
Q Consensus 542 ~P~~~~ 547 (836)
+|.-..
T Consensus 294 dpslas 299 (329)
T KOG0545|consen 294 DPSLAS 299 (329)
T ss_pred ChhhHH
Confidence 997644
No 216
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.75 E-value=4.3e-05 Score=54.75 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 638 ~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+++|+++|.++..+|++++|+.+|++||+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888764
No 217
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.68 E-value=6.7e-05 Score=53.71 Aligned_cols=33 Identities=33% Similarity=0.318 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
.+|+++|.+|..+|++++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 346666777777777777777777777777753
No 218
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.66 E-value=0.059 Score=59.28 Aligned_cols=278 Identities=16% Similarity=0.081 Sum_probs=180.2
Q ss_pred hHHHHHHHHHhcCCCChHHHHHH--HHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 003249 463 KRWEDLDKATALDPTLSYPYMYR--ASSLMTKQNVEAALAEINRILGFKLALECLELRFCF--FLALEDYQAALCDVQAI 538 (836)
Q Consensus 463 eAi~d~~kAi~ldP~~~~ay~~r--g~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~--~~~lg~~~~Ai~d~~~a 538 (836)
.|...-.++-.+=..+.++..++ +.+-.-.|++++|-.-|+..+. +|....+-.||.- -..+|+++.|+.+-+.+
T Consensus 102 lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~A 180 (531)
T COG3898 102 LARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERA 180 (531)
T ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33333444444444555555544 4455678999999999998885 5666666677754 45689999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHH---
Q 003249 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL--- 615 (836)
Q Consensus 539 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~--- 615 (836)
-+.-|.-.. +....++.. -..++|+.|..+.+ ... ....+.|+ .+-..++.++.
T Consensus 181 a~~Ap~l~W-----A~~AtLe~r-~~~gdWd~AlkLvd---~~~------------~~~vie~~--~aeR~rAvLLtAkA 237 (531)
T COG3898 181 AEKAPQLPW-----AARATLEAR-CAAGDWDGALKLVD---AQR------------AAKVIEKD--VAERSRAVLLTAKA 237 (531)
T ss_pred HhhccCCch-----HHHHHHHHH-HhcCChHHHHHHHH---HHH------------HHHhhchh--hHHHHHHHHHHHHH
Confidence 999998643 222233322 33577877743222 100 11111121 22223333332
Q ss_pred ---HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChh
Q 003249 616 ---RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (836)
Q Consensus 616 ---~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~ 692 (836)
-.-++..|..+...+.++.|+..-+-+--+..|+..|+.-++-...+.+-+..|..+-. ..|..+.+| +
T Consensus 238 ~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--~lY~~ar~g------d 309 (531)
T COG3898 238 MSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--LLYVRARSG------D 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--HHHHHhcCC------C
Confidence 13458889999999999999999999999999999999999999999999999876321 222222222 2
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-hHHhhHHHHHHhc-CCHHHHHHHHHHH
Q 003249 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLK-NNKTTAYEEMTKL 770 (836)
Q Consensus 693 ~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-~A~~~la~~~~~~-g~~~~A~~~~~ka 770 (836)
+++..+..+-+..+-.+++.+....+...-.+-|+|..|...-+.+..+.|. .++.-++.+-... |+-.+.-.-+.++
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3444454444433333444566677777778888888888888888888775 4566666665554 6666666666666
Q ss_pred HH
Q 003249 771 IK 772 (836)
Q Consensus 771 ie 772 (836)
++
T Consensus 390 v~ 391 (531)
T COG3898 390 VK 391 (531)
T ss_pred hc
Confidence 64
No 219
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.64 E-value=0.014 Score=72.53 Aligned_cols=216 Identities=14% Similarity=0.108 Sum_probs=163.3
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC-hHHHHHHHHHHHh----cCCHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG-FKLA-LECLELRFCFFLA----LEDYQAALCDV 535 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~-l~P~-~~~~~~rg~~~~~----lg~~~~Ai~d~ 535 (836)
.+..+||++-+.-+|+.+-.|.+--.-..+++..++|.+...+||. +|+. -+...|.-.+|.. -|.-+.-.+-|
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 4567899999999999999999988889999999999999999996 6774 2333333333333 35556666777
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003249 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (836)
Q Consensus 536 ~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~ 615 (836)
++|-+..--+.-+ ..+..+|+..++++.| ...+++|++.--+....|...|..++
T Consensus 1521 eRAcqycd~~~V~-------~~L~~iy~k~ek~~~A------------------~ell~~m~KKF~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVH-------LKLLGIYEKSEKNDEA------------------DELLRLMLKKFGQTRKVWIMYADFLL 1575 (1710)
T ss_pred HHHHHhcchHHHH-------HHHHHHHHHhhcchhH------------------HHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 7777765443211 1223345555555555 45566777776677788999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhH
Q 003249 616 RLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSST 693 (836)
Q Consensus 616 ~l~~~~eAl~~~~~Al~l~P~--~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~ 693 (836)
+.++-++|.+.+.+|++--|. +.+..-.-+...++.|+.+.+-..|+-.+.-.|.
T Consensus 1576 ~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK----------------------- 1632 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK----------------------- 1632 (1710)
T ss_pred cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-----------------------
Confidence 999999999999999999999 8888888999999999999998888877754332
Q ss_pred HHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003249 694 VVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (836)
Q Consensus 694 ~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~ 742 (836)
.-+.|+-.-..-.+.|..+-+...|++++.++
T Consensus 1633 -----------------RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1633 -----------------RTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred -----------------chhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 23567666666667788899999999999875
No 220
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00012 Score=75.12 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=62.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 589 aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
++.+|.++|.++|..+..|.+++++++++++++.+..+-++|+++.|+.+.+++.+|..+.....|++||....+|..+
T Consensus 29 ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 29 AIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 5777888888888887888888888888888888888888888888888888888888888888888888777777543
No 221
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0071 Score=63.37 Aligned_cols=164 Identities=17% Similarity=0.198 Sum_probs=126.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~ 557 (836)
+.-....-|.+++..|++++|+....+.. +.++.-.--.++.++.+.+-|....++..+++-+...
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tL---------- 172 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATL---------- 172 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH----------
Confidence 33455667788999999999998766632 2344444457889999999999999999999877531
Q ss_pred HHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003249 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (836)
Q Consensus 558 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~ 637 (836)
-+.|..|..+..-.+.+. ++.-.|..+=+.-|-.+.....++.+.+.+++|++|...++.|+.-++++
T Consensus 173 ----------tQLA~awv~la~ggek~q--dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 173 ----------TQLAQAWVKLATGGEKIQ--DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred ----------HHHHHHHHHHhccchhhh--hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 112444555443333322 24666677777678889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 638 HERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 638 ~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
++++.|+-..-..+|.-.++.+.+-.-+..
T Consensus 241 petL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 241 PETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999999999999999998877655544
No 222
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0014 Score=69.22 Aligned_cols=104 Identities=16% Similarity=0.053 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHH
Q 003249 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (836)
Q Consensus 515 ~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~ 594 (836)
+|+.+.-++..|||.+|..-|..=|+--|+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~------------------------------------------------ 175 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST------------------------------------------------ 175 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc------------------------------------------------
Confidence 67778889999999999999999999999863
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 595 QMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 595 ~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~---~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
--+.++|=+|.++...|++++|...|..+++-.|+ -+++++.+|.++.++|+.|+|-..+++.++-.|+.
T Consensus 176 -------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 176 -------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred -------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 23567888999999999999999999999987655 47889999999999999999999999999998887
Q ss_pred HH
Q 003249 672 EA 673 (836)
Q Consensus 672 ~a 673 (836)
++
T Consensus 249 ~a 250 (262)
T COG1729 249 DA 250 (262)
T ss_pred HH
Confidence 54
No 223
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.0064 Score=68.07 Aligned_cols=137 Identities=15% Similarity=0.040 Sum_probs=91.4
Q ss_pred hhccchHHHHHHHHHHHhc--cchhhHhhHHHHHHhcCCHHHHHHHHHHh-HhccCCchHHHHHhhhcCChhhHHHHHHH
Q 003249 394 LLRKEYDEAEHLFEAAVNA--GHIYSIAGLARLGYIKGHKLWAYEKLNSV-ISSVTPLGWMYQERSLYCEGDKRWEDLDK 470 (836)
Q Consensus 394 ~~~g~y~eAi~~f~~Al~l--~~~~a~~~la~~~~~~G~~~~A~~~~~~a-i~~~~~~~~ay~~r~~~~~~~eAi~d~~k 470 (836)
++...+.-+...-+.++.+ +.+.+..--+..++..|++..|.+.+... |...+.
T Consensus 217 lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g----------------------- 273 (696)
T KOG2471|consen 217 LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAG----------------------- 273 (696)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccC-----------------------
Confidence 3444454444444444433 33345555567788889988888876533 222111
Q ss_pred HHhcCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------cCC----------ChHHHHHHHHHHHhcCCHH
Q 003249 471 ATALDPTL--SYPYMYRASSLMTKQNVEAALAEINRILG---------FKL----------ALECLELRFCFFLALEDYQ 529 (836)
Q Consensus 471 Ai~ldP~~--~~ay~~rg~~l~~~g~~~eAi~~~~kai~---------l~P----------~~~~~~~rg~~~~~lg~~~ 529 (836)
--+-|.. --.|+|+|.+.++.|.|.-++-.|.||++ +.| ..+.+||.|..|...|+.-
T Consensus 274 -~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl 352 (696)
T KOG2471|consen 274 -GTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL 352 (696)
T ss_pred -ccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcH
Confidence 0011111 13468899999999999999999999995 344 1356788999999999999
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHH
Q 003249 530 AALCDVQAILTLSPDYRMFEGRVAA 554 (836)
Q Consensus 530 ~Ai~d~~~al~l~P~~~~~~~~~~~ 554 (836)
.|.++|.++.+.--.++-.|.|++.
T Consensus 353 ~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 353 LAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999998877777667777764
No 224
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.54 E-value=5.7e-05 Score=77.84 Aligned_cols=115 Identities=23% Similarity=0.275 Sum_probs=78.3
Q ss_pred eEEehhHHHHhhcCHHHHHhhcCCCCcC---------CcceeEecCCCCCHHHHH-HHHHhhccCcCCCCCHHHHHHHHH
Q 003249 191 EKIECDRQKFAALSAPFSAMLNGSFMES---------LCEDIDLSENNISPSGLR-IISDFSVTGSLNGVTPNLLLEILI 260 (836)
Q Consensus 191 ~~~~aHr~vLaa~S~yF~amf~~~~~Es---------~~~~I~l~~~~is~~~~~-~ll~f~Ytg~l~~~~~~~v~~lL~ 260 (836)
.+|+||+.|.+++|++||.++....+|. ....|.+.+ -|-|.+|. .+++|+||++++ ++
T Consensus 261 eeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD-lS--------- 329 (401)
T KOG2838|consen 261 EEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD-LS--------- 329 (401)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc-hh---------
Confidence 3799999999999999999996544332 235677765 67777776 679999999998 43
Q ss_pred HHHHHhHHHHHHHHHHHHHh---hh--CCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhccc
Q 003249 261 FANKFCCERLKDACDRKLAS---LV--ASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD 317 (836)
Q Consensus 261 aA~~~c~~~L~~~c~~~l~~---~v--~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~ 317 (836)
+|.+ |.+.+-+.-+..-.. .. ...++|+++++.|+......|+..|..|+..+...
T Consensus 330 l~hk-ce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaa 390 (401)
T KOG2838|consen 330 LAHK-CEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAA 390 (401)
T ss_pred hccc-CCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2221 333222222221111 00 12468899999999998999999999998876544
No 225
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.52 E-value=0.00014 Score=51.77 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 638 ~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
|++|+.+|.+++.+|++++|++.|+++++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 467888888888888888888888888888775
No 226
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.52 E-value=0.0038 Score=74.45 Aligned_cols=84 Identities=19% Similarity=0.158 Sum_probs=80.0
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 589 aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
+++...+.+...|+..-+....|+++.++|+.++|..+++..-...++|-..+.-+-.+|.++|++++|+..|++++.-+
T Consensus 28 al~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~ 107 (932)
T KOG2053|consen 28 ALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY 107 (932)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 58888999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred cchH
Q 003249 669 RSFE 672 (836)
Q Consensus 669 p~~~ 672 (836)
|+.+
T Consensus 108 P~ee 111 (932)
T KOG2053|consen 108 PSEE 111 (932)
T ss_pred CcHH
Confidence 9954
No 227
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.00069 Score=70.15 Aligned_cols=94 Identities=20% Similarity=0.300 Sum_probs=81.4
Q ss_pred EEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCC-c-CCcceeEecCCCCCHHHHHHHHHhhccCcCCCCC--HHHHHHHH
Q 003249 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM-E-SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT--PNLLLEIL 259 (836)
Q Consensus 184 V~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~-E-s~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~--~~~v~~lL 259 (836)
|.+-|||+.|..++.-|.-...+|++||.+++. + .....|-|. =||.-|..+|+||..|.+. ++ ...+.+|+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFID---RSpKHF~~ILNfmRdGdv~-LPe~~kel~El~ 82 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFID---RSPKHFDTILNFMRDGDVD-LPESEKELKELL 82 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEec---CChhHHHHHHHhhhccccc-CccchHHHHHHH
Confidence 668899999999999999999999999999873 2 233667777 7999999999999988877 64 45688999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhh
Q 003249 260 IFANKFCCERLKDACDRKLASL 281 (836)
Q Consensus 260 ~aA~~~c~~~L~~~c~~~l~~~ 281 (836)
.=|.+|.++.|...|.+.+...
T Consensus 83 ~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 83 REAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHHHhhHHHHHHHHHHHhhhc
Confidence 9999999999999999987654
No 228
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.44 E-value=0.021 Score=66.47 Aligned_cols=48 Identities=13% Similarity=-0.014 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 492 KQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 492 ~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
.+++..||...+.+-..+.....|-..+.-|..+|+|+-|.+-|.++=
T Consensus 745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~ 792 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD 792 (1636)
T ss_pred hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc
Confidence 455666666555443332222223345677888888888888776654
No 229
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.43 E-value=0.31 Score=53.86 Aligned_cols=285 Identities=16% Similarity=0.118 Sum_probs=188.7
Q ss_pred HHHHHHhhccchHHHHHHHHHHHhc---c-chhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCC-----chHHHHHhhhc
Q 003249 388 QLGCVRLLRKEYDEAEHLFEAAVNA---G-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTP-----LGWMYQERSLY 458 (836)
Q Consensus 388 ~lG~~~~~~g~y~eAi~~f~~Al~l---~-~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~-----~~~ay~~r~~~ 458 (836)
..|.+....|+-..|.+.-.++-++ + ++-.+.--+..-...|+++.|.+.|+..+.. |. +--.|.+-...
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhc
Confidence 4577777888888887776666533 2 2233444466778899999999999876542 31 22233333345
Q ss_pred CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHH------hcCCHH
Q 003249 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK---LALECLELRFCFFL------ALEDYQ 529 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~---P~~~~~~~rg~~~~------~lg~~~ 529 (836)
|..+-|+..-++|-++.|....++...-..+...|++++||...+...+-. |+. +--.|+.++. ---|..
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~-aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV-AERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh-HHHHHHHHHHHHHHHHhcCChH
Confidence 666889999999999999999999988888999999999999988776543 321 1112333322 235688
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHH
Q 003249 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (836)
Q Consensus 530 ~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~ 609 (836)
.|..+-.++++|.|+++++-.-.+...+ + .+...+ .-..+..+...+|.-.++
T Consensus 247 ~Ar~~A~~a~KL~pdlvPaav~AAralf-----~-d~~~rK------------------g~~ilE~aWK~ePHP~ia--- 299 (531)
T COG3898 247 SARDDALEANKLAPDLVPAAVVAARALF-----R-DGNLRK------------------GSKILETAWKAEPHPDIA--- 299 (531)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHH-----h-ccchhh------------------hhhHHHHHHhcCCChHHH---
Confidence 9999999999999999774332221111 0 011111 123445556666544332
Q ss_pred HHHHHHHcCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHh-hccc
Q 003249 610 QSLLLLRLNCPEAAMRSLQLA---RQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL-ADSS 685 (836)
Q Consensus 610 ~gl~l~~l~~~~eAl~~~~~A---l~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL-~~~~ 685 (836)
.+|.+..--+.|+.-++++ -.+.|++.|....+...-++-|++-.|-...+.++.+.|.-.+|.+.+..- +++
T Consensus 300 --~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAet- 376 (531)
T COG3898 300 --LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAET- 376 (531)
T ss_pred --HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhcc-
Confidence 2344333334455555544 468999999999999999999999999999999999999876666655432 222
Q ss_pred cCCCChhHHHHHHHHHhcCCcc
Q 003249 686 QDSSCSSTVVSLLEDALKCPSD 707 (836)
Q Consensus 686 l~~~~~~~~i~~l~~Al~~~~~ 707 (836)
++...+-..+-++++.|.+
T Consensus 377 ---GDqg~vR~wlAqav~APrd 395 (531)
T COG3898 377 ---GDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred ---CchHHHHHHHHHHhcCCCC
Confidence 2344556667777776655
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.42 E-value=0.00029 Score=53.77 Aligned_cols=42 Identities=21% Similarity=0.136 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~ 646 (836)
.+|+.+|.++.++|++++|++.|+++++.+|+++++|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788888888888888888888888888888888887774
No 231
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.41 E-value=0.00029 Score=50.11 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
..++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345666777777777777777777777777764
No 232
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.40 E-value=0.098 Score=62.35 Aligned_cols=186 Identities=15% Similarity=0.012 Sum_probs=120.4
Q ss_pred hhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcC-----CHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHHHH
Q 003249 394 LLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKG-----HKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDL 468 (836)
Q Consensus 394 ~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G-----~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d~ 468 (836)
...|+..+|..+|+.+...++..+...+|.+++..+ +.+.|+.++..+... |
T Consensus 223 ~~~~~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~-----------------------~ 279 (552)
T KOG1550|consen 223 NESGELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES-----------------------F 279 (552)
T ss_pred ccchhhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH-----------------------H
Confidence 333456788899999999899999999998876552 456666665544332 2
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 003249 469 DKATALDPTLSYPYMYRASSLMTKQ-----NVEAALAEINRILGFKLALECLELRFCFFLALE---DYQAALCDVQAILT 540 (836)
Q Consensus 469 ~kAi~ldP~~~~ay~~rg~~l~~~g-----~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg---~~~~Ai~d~~~al~ 540 (836)
.++.... ++.+.+.+|.+|.+.. +++.|+..|.++-++.. +++.+.+|.++..-. |+..|...|..|.+
T Consensus 280 ~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 280 KKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred HHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 2222222 4557778888887743 67778998888887653 444566777665544 45666666666654
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR---- 616 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~---- 616 (836)
. ++..+.++.+.++..
T Consensus 357 ~------------------------------------------------------------G~~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 357 A------------------------------------------------------------GHILAIYRLALCYELGLGV 376 (552)
T ss_pred c------------------------------------------------------------CChHHHHHHHHHHHhCCCc
Confidence 3 222333333333332
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 003249 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEESIQM 667 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~-G~~eeAl~~~~~Ai~l 667 (836)
....+.|...|.+|.+.+ .+.+.+.+|..+..- |+++.+...+....++
T Consensus 377 ~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 345778888899998888 566677777776433 8888888776666554
No 233
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.013 Score=60.32 Aligned_cols=169 Identities=14% Similarity=0.142 Sum_probs=102.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHH-hcCCHHHHHHHHHHHHhcccchHHH
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLVYEGWILY-DTSHCEEGLRKAEESIQMKRSFEAF 674 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e------al~~~G~il~-~~G~~eeAl~~~~~Ai~l~p~~~a~ 674 (836)
+-+..|..-+.++.+. ++++|.+++++||+|-.+-.. -+..+|.+|- ++.++++||..|++|-+--...+
T Consensus 72 Daat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee-- 148 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE-- 148 (288)
T ss_pred hHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--
Confidence 3455666666666554 899999999999987554322 2335666663 55778888888887764221110
Q ss_pred HHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC--Cch------hH
Q 003249 675 FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI--RHT------RA 746 (836)
Q Consensus 675 ~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l--~~~------~A 746 (836)
+...+ ...+.-.+..-..+|+|.+||+.|++...- ++. .-
T Consensus 149 ---------------s~ssA-----------------NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 149 ---------------SVSSA-----------------NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred ---------------hhhhH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 00000 012222233345678999999999998763 332 22
Q ss_pred H-hhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH--HH---------ccCHHHHHHHHHHhHhcCC
Q 003249 747 H-QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR--SE---------YCDRELTRADLEMVTQLDP 805 (836)
Q Consensus 747 ~-~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r--~~---------~~~~~~A~~D~~~Ai~l~P 805 (836)
| +.-|.+++-+++.=.+-....|--+++|+.+..-+-. .. .-.+.+.+..|..-.+||.
T Consensus 197 yflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~ 267 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQ 267 (288)
T ss_pred HHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHH
Confidence 3 3345566666777666666666778899988774332 11 1236777777777766664
No 234
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.22 E-value=0.00046 Score=74.29 Aligned_cols=86 Identities=21% Similarity=0.194 Sum_probs=69.0
Q ss_pred hcCCHHHHHHHHHHhHhccCCchHHHHHhhh----cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 003249 427 IKGHKLWAYEKLNSVISSVTPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEI 502 (836)
Q Consensus 427 ~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~----~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~ 502 (836)
..|.++.|+..+.++|.++|.++.+|..|+. +.....|+.||+.|+++||+.+..|..||.+...+|.+++|-.++
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 3455666666666666666666666666652 244578999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCh
Q 003249 503 NRILGFKLAL 512 (836)
Q Consensus 503 ~kai~l~P~~ 512 (836)
..|.+++-+.
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 9999987654
No 235
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0015 Score=70.09 Aligned_cols=77 Identities=23% Similarity=0.151 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFK---LAL--ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~---P~~--~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~ 552 (836)
.+..|.-=|+-++..++|..|+..|++.|+-+ |+. -.|.||+.+..-+|+|..||.|..+|++++|.+..++.|.
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 35667778999999999999999999999874 442 3477899999999999999999999999999999887775
Q ss_pred HH
Q 003249 553 AA 554 (836)
Q Consensus 553 ~~ 554 (836)
+.
T Consensus 160 Ak 161 (390)
T KOG0551|consen 160 AK 161 (390)
T ss_pred hH
Confidence 53
No 236
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.19 E-value=0.17 Score=56.20 Aligned_cols=185 Identities=17% Similarity=0.107 Sum_probs=116.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch----
Q 003249 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA----SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF---- 671 (836)
Q Consensus 600 ~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P----~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~---- 671 (836)
....+..|...+.+..+.|.++-|...+.++...++ ..+...+....++..+|+.++|+...+..+.-....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 566778899999999999999999999999998762 257788889999999999999999999988722111
Q ss_pred --HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhc------CCHHHHHHHHHHHHcCCc
Q 003249 672 --EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC------GQLDLAADCYSNALKIRH 743 (836)
Q Consensus 672 --~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~------g~~deAi~~y~kAL~l~~ 743 (836)
......+.. . ...+..... ... ......+.++.-+|.-.... +..++++..|.+|+++.|
T Consensus 222 ~~~~~~~~~~~--~-~~~~~~~~~-~~~--------~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 222 ISNAELKSGLL--E-SLEVISSTN-LDK--------ESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred ccHHHHhhccc--c-ccccccccc-hhh--------hhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 000000000 0 000000000 000 00111356788888877777 889999999999998876
Q ss_pred h--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHH--HHHHHccCHHHHHHHHHHhHhcCCCCcccc
Q 003249 744 T--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY--EKRSEYCDRELTRADLEMVTQLDPLRVYPY 811 (836)
Q Consensus 744 ~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay--~~r~~~~~~~~A~~D~~~Ai~l~P~~~~~y 811 (836)
. .++..+|..+.. .++..+.....- ..+.++ ...|+.-|-+|+.+.|+++.-.
T Consensus 290 ~~~k~~~~~a~~~~~-------------~~~~~~~~~~~~~~~~~~~~--~~~ai~~y~~al~~~~~~~~~~ 346 (352)
T PF02259_consen 290 SWEKAWHSWALFNDK-------------LLESDPREKEESSQEDRSEY--LEQAIEGYLKALSLGSKYVRQD 346 (352)
T ss_pred hHHHHHHHHHHHHHH-------------HHHhhhhcccccchhHHHHH--HHHHHHHHHHHHhhCCCchHHH
Confidence 5 456666554432 233332211110 122222 3568888999999999855433
No 237
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.15 E-value=0.00059 Score=61.20 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=68.0
Q ss_pred EEEEeCCeEEehhHHHHh-hcCHHHHHhhcCC---CCcCCcceeEecCCCCCHHHHHHHHHhhcc-CcCCCCCHHHHHHH
Q 003249 184 VVFRIHEEKIECDRQKFA-ALSAPFSAMLNGS---FMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPNLLLEI 258 (836)
Q Consensus 184 V~~~v~~~~~~aHr~vLa-a~S~yF~amf~~~---~~Es~~~~I~l~~~~is~~~~~~ll~f~Yt-g~l~~~~~~~v~~l 258 (836)
|+|.|||+.|..-+..|. ....+|..||.+. ........+-|. =+|..|+.+|+|+.+ +.+...+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD---Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID---RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES---S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec---cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567999999975 445556777776 799999999999999 77772235578889
Q ss_pred HHHHHHHhHHHH-HHHH
Q 003249 259 LIFANKFCCERL-KDAC 274 (836)
Q Consensus 259 L~aA~~~c~~~L-~~~c 274 (836)
+.-|++|+++.| .+.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999887 5544
No 238
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.048 Score=57.10 Aligned_cols=139 Identities=10% Similarity=0.072 Sum_probs=113.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccc
Q 003249 607 YFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (836)
Q Consensus 607 ~~~~gl~l~~l~~~~eAl~~~~~Al~l~-P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~ 685 (836)
.+-...+++..+.|.--+..+.+.++.+ |.++.....+|.+-++-|+.+.|-..|++.-+-..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~---------------- 243 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ---------------- 243 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh----------------
Confidence 4455567788999999999999999988 78888899999999999999999888886542110
Q ss_pred cCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHH
Q 003249 686 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTA 763 (836)
Q Consensus 686 l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A 763 (836)
.++ ..-.+-..+.|.+.+|...++|-+|...|.+.++-+|. .|..+.|.++.-.|+..+|
T Consensus 244 -----------kL~-------~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 244 -----------KLD-------GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred -----------hhh-------ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 000 00012357889999999999999999999999998764 5778999999999999999
Q ss_pred HHHHHHHHHhcCCCHH
Q 003249 764 YEEMTKLIKKARNNAS 779 (836)
Q Consensus 764 ~~~~~kaie~~p~~a~ 779 (836)
++.++.+.++.|..+.
T Consensus 306 iK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 306 LKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHHhccCCccch
Confidence 9999999999998643
No 239
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.12 Score=61.43 Aligned_cols=141 Identities=12% Similarity=-0.050 Sum_probs=71.5
Q ss_pred HHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHh----------HhccCCchHHHHHh---
Q 003249 389 LGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSV----------ISSVTPLGWMYQER--- 455 (836)
Q Consensus 389 lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~a----------i~~~~~~~~ay~~r--- 455 (836)
+-..|...|++++|.+.-+.-=++.-...|++.|.-...+++...|++.|+++ +..+|+.-.-|.++
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d 911 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRD 911 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccc
Confidence 33445555666655443221111111223445555556666666777776653 12223222222221
Q ss_pred -------hhc----CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 003249 456 -------SLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLA 524 (836)
Q Consensus 456 -------~~~----~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~ 524 (836)
|.| |+.+.|+..|..| .-|+..-.++.-+|+.++|-..-+. .-+-.+-|.+|.-|..
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A--------~D~fs~VrI~C~qGk~~kAa~iA~e----sgd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSA--------KDYFSMVRIKCIQGKTDKAARIAEE----SGDKAACYHLARMYEN 979 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHh--------hhhhhheeeEeeccCchHHHHHHHh----cccHHHHHHHHHHhhh
Confidence 111 3334555555444 2244444445555555555432221 1233455678999999
Q ss_pred cCCHHHHHHHHHHHHhh
Q 003249 525 LEDYQAALCDVQAILTL 541 (836)
Q Consensus 525 lg~~~~Ai~d~~~al~l 541 (836)
.|+..+|+..|.+|-.+
T Consensus 980 ~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999998877554
No 240
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.024 Score=59.33 Aligned_cols=139 Identities=12% Similarity=0.052 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 003249 481 PYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (836)
Q Consensus 481 ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~--~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~ 558 (836)
.-+-...++.-.|.|.-.+..++++|+.+|. +.....+|.+-.+.||.+.|-..|+++-+-+-.-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL------------- 245 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL------------- 245 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-------------
Confidence 4455667788899999999999999999974 4555668999999999999999998765321110
Q ss_pred HHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 003249 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (836)
Q Consensus 559 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~ 638 (836)
..--++-..+.+.+.++...|++.+|.+.|.+.+..+|.++
T Consensus 246 ---------------------------------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 246 ---------------------------------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred ---------------------------------------hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 00012234556777888999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 639 eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+-++.+.++..+|+.-+|++..+.++++.|..
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999999999998865
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.09 E-value=0.12 Score=57.85 Aligned_cols=141 Identities=16% Similarity=0.177 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhccc
Q 003249 603 KGVLYFRQSLLLLR---LNCPEAAMRSLQL-ARQHAASDHERLVYEGWILYD---------TSHCEEGLRKAEESIQMKR 669 (836)
Q Consensus 603 ~~~~~~~~gl~l~~---l~~~~eAl~~~~~-Al~l~P~~~eal~~~G~il~~---------~G~~eeAl~~~~~Ai~l~p 669 (836)
.....+..|.++.+ .|+.++|++.+.. ...-.+.+++.+...|.||.+ ....++|+..|.++.+++|
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 34445556666676 8999999999998 667888999999999999853 3457899999999999998
Q ss_pred chHHHHHHHHHhhccccCCCChhHHHHH---HHHHh-c-CCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc
Q 003249 670 SFEAFFLKAYALADSSQDSSCSSTVVSL---LEDAL-K-CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (836)
Q Consensus 670 ~~~a~~~~a~aL~~~~l~~~~~~~~i~~---l~~Al-~-~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~ 743 (836)
+...-=|.+..|.-.|.+...+...-+. +...+ + -..+....-+.+-.++.+..-.|++++|++.++++++++|
T Consensus 258 ~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 258 DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 7633223333333333222222111111 11111 0 0011111224445555555555666666666666665543
No 242
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.051 Score=64.35 Aligned_cols=109 Identities=16% Similarity=0.053 Sum_probs=56.1
Q ss_pred HhhccchHHHHHHHHHHHh-ccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHHHHHHH
Q 003249 393 RLLRKEYDEAEHLFEAAVN-AGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKA 471 (836)
Q Consensus 393 ~~~~g~y~eAi~~f~~Al~-l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d~~kA 471 (836)
|..-|..+.| |+ +|+ |.....|-++|++..+-.+.+-|.-++ |.+-..|| ...+.+|
T Consensus 738 yvtiG~MD~A---fk-sI~~IkS~~vW~nmA~McVkT~RLDVAkVCl----------Ghm~~aRg--------aRAlR~a 795 (1416)
T KOG3617|consen 738 YVTIGSMDAA---FK-SIQFIKSDSVWDNMASMCVKTRRLDVAKVCL----------GHMKNARG--------ARALRRA 795 (1416)
T ss_pred EEEeccHHHH---HH-HHHHHhhhHHHHHHHHHhhhhccccHHHHhh----------hhhhhhhh--------HHHHHHH
Confidence 4556777777 32 333 356668888988877666666665542 22222222 1123444
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHH
Q 003249 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALC 533 (836)
Q Consensus 472 i~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~ 533 (836)
++ ||+..+ ..-+..-.++|..++|...|++--+.| .+-.+|...|.+++|++
T Consensus 796 ~q-~~~e~e--akvAvLAieLgMlEeA~~lYr~ckR~D-------LlNKlyQs~g~w~eA~e 847 (1416)
T KOG3617|consen 796 QQ-NGEEDE--AKVAVLAIELGMLEEALILYRQCKRYD-------LLNKLYQSQGMWSEAFE 847 (1416)
T ss_pred Hh-CCcchh--hHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHhcccHHHHHH
Confidence 43 232222 233444456666666666666554322 22344555566665554
No 243
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0017 Score=69.58 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC---c---hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003249 711 KGQALNNLGSVYVDCGQLDLAADCYSNALKIR---H---TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 784 (836)
Q Consensus 711 ~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~---~---~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r 784 (836)
.+..|..-|+-|++..+|..|+.+|.++|+-+ + .-.|.|+|-+++..|+|..|+.|.++++.++|.|.-||+.=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 35678889999999999999999999999975 2 24689999999999999999999999999999999999864
Q ss_pred H----HccCHHHHHHHHHHhHhcCCCCcc
Q 003249 785 S----EYCDRELTRADLEMVTQLDPLRVY 809 (836)
Q Consensus 785 ~----~~~~~~~A~~D~~~Ai~l~P~~~~ 809 (836)
+ ++.++.+|+++++.-+++|-..-.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~ 188 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKK 188 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 2 456778888888877666654333
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.03 E-value=0.0013 Score=50.12 Aligned_cols=38 Identities=16% Similarity=-0.046 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG 550 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~ 550 (836)
+++..+|.+|..+|++++|++.|+++++.+|++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~ 39 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWR 39 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 34555666666666666666666666666666655443
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.00 E-value=0.016 Score=65.75 Aligned_cols=174 Identities=12% Similarity=0.055 Sum_probs=109.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHH
Q 003249 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 695 (836)
Q Consensus 616 ~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i 695 (836)
+..++++-++...+|++++|+-++||+.++.= ...-..||.+.|++|++..... +.+.......+
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g---------- 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS---LGKSQFLQHHG---------- 244 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh---hchhhhhhccc----------
Confidence 45567778888888899999888888766542 2344678888888887643221 11100000000
Q ss_pred HHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc----hhHHhhHHHHHHhcCCHHHHHHHHHHHH
Q 003249 696 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH----TRAHQGLARVHFLKNNKTTAYEEMTKLI 771 (836)
Q Consensus 696 ~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~----~~A~~~la~~~~~~g~~~~A~~~~~kai 771 (836)
..-+...-.+..+ ..-+-..++.+..++|+.+|||+.|+.-++..| ...|.++-.+++..+.|.++-+-+.|-=
T Consensus 245 -~~~e~~~~Rdt~~-~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 245 -HFWEAWHRRDTNV-LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred -chhhhhhccccch-hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 0000000000000 022446788999999999999999999997644 3588999999999999988876666643
Q ss_pred Hh-cCCCHHHHHHHH-----HccC---------------HHHHHHHHHHhHhcCCC
Q 003249 772 KK-ARNNASAYEKRS-----EYCD---------------RELTRADLEMVTQLDPL 806 (836)
Q Consensus 772 e~-~p~~a~Ay~~r~-----~~~~---------------~~~A~~D~~~Ai~l~P~ 806 (836)
++ -|+.|.-.+.+. ..|| -..|++...+|++-||.
T Consensus 323 Di~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 323 DISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred cccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 33 256665544431 1232 24578889999999996
No 246
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.96 E-value=0.1 Score=65.22 Aligned_cols=234 Identities=7% Similarity=0.045 Sum_probs=150.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCChHH-HHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHHHHHhhhH
Q 003249 491 TKQNVEAALAEINRILGFKLALEC-LELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLVREHIDNW 568 (836)
Q Consensus 491 ~~g~~~eAi~~~~kai~l~P~~~~-~~~rg~~~~~lg~~~~Ai~d~~~al~-l~P~~~~~~~~~~~~~~~~~l~~~~~~~ 568 (836)
+.++-.+..++|.+.+.-+||... |..--..+.++++.++|.+-+++||. +||.-.+
T Consensus 1436 dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee--------------------- 1494 (1710)
T KOG1070|consen 1436 DLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE--------------------- 1494 (1710)
T ss_pred ccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH---------------------
Confidence 334444567899999999998643 54445667899999999999999985 5554321
Q ss_pred hHHHHHHhhhhccCcccccc-hHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003249 569 TIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (836)
Q Consensus 569 ~~a~~~~~~~~~~~~~~~~~-aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~i 647 (836)
++-..|++.++..-.+...+ -..++.+|-+. -+--..|..+.-+|.+-.++++|.+.|+..++-.-+....|...|..
T Consensus 1495 EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1495 EKLNIWIAYLNLENAYGTEESLKKVFERACQY-CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADF 1573 (1710)
T ss_pred HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 11222333222222222111 12233333333 22234566666677777778888888888877777777778888877
Q ss_pred HHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCC
Q 003249 648 LYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ 727 (836)
Q Consensus 648 l~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~ 727 (836)
++.+.+-++|-...++|++-=|.. +..+...--+..-++.|+
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~lPk~--------------------------------------eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQ--------------------------------------EHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhhcchh--------------------------------------hhHHHHHHHHHHHhhcCC
Confidence 777777777766666666433321 112334445566778888
Q ss_pred HHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHh--cCCCHHHHHHH
Q 003249 728 LDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKK--ARNNASAYEKR 784 (836)
Q Consensus 728 ~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~--~p~~a~Ay~~r 784 (836)
-+.+...|.--|.-.|. ..+.-....-.+.|+.+.+-..|+++|++ .|..+--.+|+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 88888888888876553 45555555666778888888889999965 57777777777
No 247
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.95 E-value=0.0012 Score=46.98 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 639 eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
++|+.+|.++.++|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57788888888888888888888888887774
No 248
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.038 Score=55.63 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=102.2
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHH
Q 003249 642 VYEGWILYDTSHCE---EGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718 (836)
Q Consensus 642 ~~~G~il~~~G~~e---eAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nl 718 (836)
...||-|....+.+ +|=..|++++..=. .-.| ..+...++....++...--..+-..+
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~---------------ak~~----~~~~~~ekf~~~n~~t~Ya~laaL~l 95 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQ---------------AKKP----KSIAAAEKFVQANGKTIYAVLAALEL 95 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------cCCc----hhHHHHHHHHhhccccHHHHHHHHHH
Confidence 34577776555554 77778888875310 0011 12333344444443433233556678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCC-c----hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHH-HHHHHH----cc
Q 003249 719 GSVYVDCGQLDLAADCYSNALKIR-H----TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASA-YEKRSE----YC 788 (836)
Q Consensus 719 G~~y~~~g~~deAi~~y~kAL~l~-~----~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~A-y~~r~~----~~ 788 (836)
+.++++.|++++|+...+.++... + .-+-.++|+++..+|.+|+|+...+.. .+++.+.- -.-||. .|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~--~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI--KEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc--ccccHHHHHHHHhhhHHHHcC
Confidence 888999999999999999999752 2 246789999999999999999544332 12222332 233554 49
Q ss_pred CHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhhh
Q 003249 789 DRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNL 824 (836)
Q Consensus 789 ~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~~ 824 (836)
|.++|++.|++|++.+|..+ -|-.+.|+--|+
T Consensus 174 ~k~~Ar~ay~kAl~~~~s~~----~~~~lqmKLn~L 205 (207)
T COG2976 174 DKQEARAAYEKALESDASPA----AREILQMKLNNL 205 (207)
T ss_pred chHHHHHHHHHHHHccCChH----HHHHHHhHHHhc
Confidence 99999999999999986544 355666655443
No 249
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.92 E-value=0.16 Score=60.55 Aligned_cols=264 Identities=14% Similarity=0.031 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHHhhc-----cchHHHHHHHHHHHh-------ccchhhHhhHHHHHHhcC-----CHHHHHHHHHHhHhc
Q 003249 382 RLLAFHQLGCVRLLR-----KEYDEAEHLFEAAVN-------AGHIYSIAGLARLGYIKG-----HKLWAYEKLNSVISS 444 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~-----g~y~eAi~~f~~Al~-------l~~~~a~~~la~~~~~~G-----~~~~A~~~~~~ai~~ 444 (836)
...+.+.+|.++... .+.+.|+.+|+.|.+ .+.+.+..++|.+|.... +...|...+.++-..
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 345777888887665 568999999998877 456678889999987765 456688888877776
Q ss_pred cCCchHHHHHhhhc-CC----hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCChHHH
Q 003249 445 VTPLGWMYQERSLY-CE----GDKRWEDLDKATALDPTLSYPYMYRASSLMTK----QNVEAALAEINRILGFKLALECL 515 (836)
Q Consensus 445 ~~~~~~ay~~r~~~-~~----~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~----g~~~eAi~~~~kai~l~P~~~~~ 515 (836)
....+..+...-.. +. ...|...|..|... .+..+.+++|.++..- .+...|...|.+|-+.+ .+.+.
T Consensus 323 g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~ 399 (552)
T KOG1550|consen 323 GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAA 399 (552)
T ss_pred CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhH
Confidence 65544433332211 11 24677777777654 4667777777776533 46778888888888877 44444
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHH
Q 003249 516 ELRFCFFL-ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIY 594 (836)
Q Consensus 516 ~~rg~~~~-~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~ 594 (836)
+.++.++. ..+++..+..-+....++--..+.... + ..+.+.. ..+......-+...+...+.
T Consensus 400 ~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a--~-----~l~~~~~---------~~~~~~~~~~~~~~~~~~~~ 463 (552)
T KOG1550|consen 400 YLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNA--A-----YLLDQSE---------EDLFSRGVISTLERAFSLYS 463 (552)
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHH--H-----HHHHhcc---------ccccccccccchhHHHHHHH
Confidence 44544322 226666666655555444322211000 0 0000000 00000000000001122222
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cC--CHHHHHHHHHHHHhc
Q 003249 595 QMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD-TS--HCEEGLRKAEESIQM 667 (836)
Q Consensus 595 ~al~~~P~~~~~~~~~gl~l~~----l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~-~G--~~eeAl~~~~~Ai~l 667 (836)
+ ....++..+...+|..+.. ..+++.|...|.+|-... +.+.+++|+.+-. .| +...|...|+++.+.
T Consensus 464 ~--a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 464 R--AAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred H--HHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 2 2234566666666666654 345788888888887777 7788888887641 11 157777777777765
Q ss_pred cc
Q 003249 668 KR 669 (836)
Q Consensus 668 ~p 669 (836)
+.
T Consensus 539 ~~ 540 (552)
T KOG1550|consen 539 DS 540 (552)
T ss_pred Cc
Confidence 43
No 250
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.82 E-value=2 Score=52.07 Aligned_cols=346 Identities=19% Similarity=0.173 Sum_probs=178.4
Q ss_pred HHHHHhh-hhhhhHHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHhccch--------hhHhhHHHHHHhcCCHHHHHH
Q 003249 367 CFLERLL-ESAETDRQRLLAFHQLGCVRL-LRKEYDEAEHLFEAAVNAGHI--------YSIAGLARLGYIKGHKLWAYE 436 (836)
Q Consensus 367 ~LLe~a~-~ca~~~~~~a~a~~~lG~~~~-~~g~y~eAi~~f~~Al~l~~~--------~a~~~la~~~~~~G~~~~A~~ 436 (836)
..|+.+. .+...+.+++..+..+|.+++ +..++++|+...+|++.+... .+..-+++++.+.+... |..
T Consensus 42 ~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~ 120 (608)
T PF10345_consen 42 KCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALK 120 (608)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHH
Confidence 3444444 455566788999999999987 888899999999999887422 12345577777777665 777
Q ss_pred HHHHhHhccCC---chHHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---
Q 003249 437 KLNSVISSVTP---LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--- 510 (836)
Q Consensus 437 ~~~~ai~~~~~---~~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P--- 510 (836)
..++.|+...+ .+|.|.-| + -+.......+++..|+..+++...+.-
T Consensus 121 ~l~~~I~~~~~~~~~~w~~~fr--------------------------l-l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~ 173 (608)
T PF10345_consen 121 NLDKAIEDSETYGHSAWYYAFR--------------------------L-LKIQLALQHKDYNAALENLQSIAQLANQRG 173 (608)
T ss_pred HHHHHHHHHhccCchhHHHHHH--------------------------H-HHHHHHHhcccHHHHHHHHHHHHHHhhhcC
Confidence 77766655332 33333222 0 011112222677777777777776542
Q ss_pred ChHH----HHHHHHHHHhcCCHHHHHHHHHHHHh------hCCCchhhhhhHH--HHHHHHHHHHHhhhHhHH-------
Q 003249 511 ALEC----LELRFCFFLALEDYQAALCDVQAILT------LSPDYRMFEGRVA--ASQLHMLVREHIDNWTIA------- 571 (836)
Q Consensus 511 ~~~~----~~~rg~~~~~lg~~~~Ai~d~~~al~------l~P~~~~~~~~~~--~~~~~~~l~~~~~~~~~a------- 571 (836)
++.. ....|.++...+..+++++..++++. ++|+.......+- ...+...+ ..+++..+
T Consensus 174 d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l--~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 174 DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSL--QQGDVKNSKQKLKQL 251 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Confidence 2211 12235666666767777776666633 2222211000000 00000000 01111111
Q ss_pred HHHHhhhhc---cCcccccchHHHH--HH-------HHhcC--C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003249 572 DCWLQLYDR---WSSVDDIGSLSVI--YQ-------MLESD--A---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (836)
Q Consensus 572 ~~~~~~~~~---~~~~~~~~aL~~~--~~-------al~~~--P---~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~ 634 (836)
...++-... |+..++-+.+..- .. .+..+ | =.+..|+--|+.....+..+.|...+.++++.-
T Consensus 252 q~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i 331 (608)
T PF10345_consen 252 QQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQI 331 (608)
T ss_pred HHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Confidence 111111111 2221111111000 00 00000 0 013445556666666666656666666655421
Q ss_pred CCC--------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCC
Q 003249 635 ASD--------------------------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 688 (836)
Q Consensus 635 P~~--------------------------~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~ 688 (836)
.+. -..+++.++...-+|++.+|....+.........
T Consensus 332 ~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~----------------- 394 (608)
T PF10345_consen 332 EKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRS----------------- 394 (608)
T ss_pred HHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcC-----------------
Confidence 111 1233556666666777766666555554332111
Q ss_pred CChhHHHHHHHHHhcCCcc--ccchHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHcCCch-----hHHhhHHHH
Q 003249 689 SCSSTVVSLLEDALKCPSD--RLRKGQALNNLGSVYVDCGQLDLAADCYS--------NALKIRHT-----RAHQGLARV 753 (836)
Q Consensus 689 ~~~~~~i~~l~~Al~~~~~--~~~~~~a~~nlG~~y~~~g~~deAi~~y~--------kAL~l~~~-----~A~~~la~~ 753 (836)
+++ ..-.+..++-.|..+...|+++.|...|. .+....+. -|-.|+..+
T Consensus 395 ----------------~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I 458 (608)
T PF10345_consen 395 ----------------PSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAII 458 (608)
T ss_pred ----------------ccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHH
Confidence 000 00125678889999999999999999998 33444322 466788888
Q ss_pred HHhcCCHHHHHHHHHHHHH-hcC
Q 003249 754 HFLKNNKTTAYEEMTKLIK-KAR 775 (836)
Q Consensus 754 ~~~~g~~~~A~~~~~kaie-~~p 775 (836)
+...+.....-.+.+++++ ++|
T Consensus 459 ~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 459 LQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred hHhhcccchhhhHHHHHHHhcCc
Confidence 8877765544445677775 555
No 251
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.79 E-value=0.0013 Score=47.93 Aligned_cols=28 Identities=43% Similarity=0.729 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+|.++|.+|.++|+|++|+++|++||.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999998876
No 252
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.75 E-value=0.0022 Score=45.68 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003249 514 CLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (836)
Q Consensus 514 ~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~ 544 (836)
.|+.+|.+|..+|++++|+..|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556667777777777777777777777664
No 253
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.73 E-value=0.0048 Score=54.25 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=61.8
Q ss_pred EEEEe-CCeEEehhHHHHhhcCHHHHHhhcCCCCc--CCcceeEecCCCCCHHHHHHHHHhh-----ccCc------CCC
Q 003249 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFME--SLCEDIDLSENNISPSGLRIISDFS-----VTGS------LNG 249 (836)
Q Consensus 184 V~~~v-~~~~~~aHr~vLaa~S~yF~amf~~~~~E--s~~~~I~l~~~~is~~~~~~ll~f~-----Ytg~------l~~ 249 (836)
|.++- +|.+|-..|- +|.-|+-.|+||+|.+.+ ....+|.+++ |....++.+.+|+ ||+. .+
T Consensus 19 VkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~d--i~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~- 94 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRD--IPSHILEKVCEYLAYKVRYTNSSTEIPEFD- 94 (112)
T ss_pred eEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEecc--chHHHHHHHHHHhhheeeeccccccCCCCC-
Confidence 45554 5666666665 577899999999987654 4557899995 9999999999987 6665 23
Q ss_pred CCHHHHHHHHHHHHHHh
Q 003249 250 VTPNLLLEILIFANKFC 266 (836)
Q Consensus 250 ~~~~~v~~lL~aA~~~c 266 (836)
|+++.+++||.+|+.+-
T Consensus 95 IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 95 IPPEMALELLMAANYLE 111 (112)
T ss_pred CCHHHHHHHHHHhhhhc
Confidence 78999999999999753
No 254
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.32 Score=51.34 Aligned_cols=166 Identities=11% Similarity=0.096 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHH-HHHHh
Q 003249 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL-KAYAL 681 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~-~a~aL 681 (836)
+...+..-|.++..-+++++|++...+. ..-|+.-.--.|+.++.++|-|....++..+++-+. ... .|.+.
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~aw 179 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAW 179 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHH
Confidence 3345556667888889999998887662 334555555678888888888888888888775432 111 12111
Q ss_pred hccccCCCChhHHHHHHHHHhc-CCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcC
Q 003249 682 ADSSQDSSCSSTVVSLLEDALK-CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKN 758 (836)
Q Consensus 682 ~~~~l~~~~~~~~i~~l~~Al~-~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g 758 (836)
-..-...+....+.-.|++..+ +++. +..++..+.+...+|+|+||....+.||.-++ +....|+-.+-...|
T Consensus 180 v~la~ggek~qdAfyifeE~s~k~~~T----~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEKTPPT----PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcccCCC----hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 1111111112222333455444 3332 34566666666666666666666666666533 345566666666666
Q ss_pred CHHHHHHHHHHHH-HhcCCCHH
Q 003249 759 NKTTAYEEMTKLI-KKARNNAS 779 (836)
Q Consensus 759 ~~~~A~~~~~kai-e~~p~~a~ 779 (836)
.-.++.+++..-+ ...|+++.
T Consensus 256 kd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 256 KDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred CChHHHHHHHHHHHhcCCcchH
Confidence 6666665554444 33455543
No 255
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.29 Score=51.55 Aligned_cols=134 Identities=14% Similarity=0.214 Sum_probs=94.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE-AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 590 L~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~-eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
+..++..++.+|++-..|..|-.+...+|++. .=++....++..+..+--+|..|-|+....+.++.=++...+.|+.+
T Consensus 98 l~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 98 LEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 44556666777777777777777777778777 67788888999999999999999999999999999999999999988
Q ss_pred -cchHHHHHHHHHhhcc-c-cCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHh-cC
Q 003249 669 -RSFEAFFLKAYALADS-S-QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD-CG 726 (836)
Q Consensus 669 -p~~~a~~~~a~aL~~~-~-l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~-~g 726 (836)
.++.|+..+-+....+ | ++......-+....+.|...|.+ -.+|+.|.-++.. .|
T Consensus 178 i~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~N---eSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 178 IRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNN---ESAWNYLKGLLELDSG 236 (318)
T ss_pred hhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCC---ccHHHHHHHHHHhccC
Confidence 5556654443332221 1 11111222234456666666655 4689988888875 55
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.19 Score=52.40 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC----C----chhHHhhHHHHHHhcCCHHHHHHHHHHHHHh----cCCCHHHH
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI----R----HTRAHQGLARVHFLKNNKTTAYEEMTKLIKK----ARNNASAY 781 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l----~----~~~A~~~la~~~~~~g~~~~A~~~~~kaie~----~p~~a~Ay 781 (836)
.+-..|.+|....+|+||-..+.|-..+ + +-+++...-.+|+-..+|..|-..|+..-.+ .|+...+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3445566666666666666655554332 1 1123334444555555666666555554432 24444444
Q ss_pred HHH-H--HccCHHHHHHHH
Q 003249 782 EKR-S--EYCDRELTRADL 797 (836)
Q Consensus 782 ~~r-~--~~~~~~~A~~D~ 797 (836)
.++ . .-||.|+...-+
T Consensus 232 enLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhccCCHHHHHHHH
Confidence 444 2 235666655444
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.69 E-value=0.052 Score=60.66 Aligned_cols=169 Identities=17% Similarity=0.120 Sum_probs=109.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhccc-ch-HHHHHHH
Q 003249 608 FRQSLLLLRLNCPEAAMRSLQLARQH----AASDHERLVYEGWILYD---TSHCEEGLRKAEESIQMKR-SF-EAFFLKA 678 (836)
Q Consensus 608 ~~~gl~l~~l~~~~eAl~~~~~Al~l----~P~~~eal~~~G~il~~---~G~~eeAl~~~~~Ai~l~p-~~-~a~~~~a 678 (836)
.+.=+.|....+|+.=++..+..-.+ -++.+..-...|.++.+ .|+.++|+.....++.-+. .+ +.+-..|
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555677788888777777766666 56677888899999998 9999999999988765442 22 2222222
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-hHHhhHHHHHHhc
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFLK 757 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-~A~~~la~~~~~~ 757 (836)
-.+.+..++. -+.+...+++||+.|.+|.+++++ +.--|++.++...
T Consensus 225 RIyKD~~~~s--------------------------------~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 225 RIYKDLFLES--------------------------------NFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA 272 (374)
T ss_pred HHHHHHHHHc--------------------------------CccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence 2222211000 011233489999999999999864 4557788888888
Q ss_pred CCHHHHHHHHHHHH--------Hh----cCCCHHHHHHHHH----ccCHHHHHHHHHHhHhcCCCCc
Q 003249 758 NNKTTAYEEMTKLI--------KK----ARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRV 808 (836)
Q Consensus 758 g~~~~A~~~~~kai--------e~----~p~~a~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P~~~ 808 (836)
|+-.+.-.+..+.. ++ .-++-|.+-.+.+ .||+++|+..++++++++|..=
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 87555544444433 11 1223333333322 3899999999999999987644
No 258
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.65 E-value=0.047 Score=50.53 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=66.9
Q ss_pred HHHHHHHHHH--HHHhhccchHHHHHHHHHHHhcc----------c----hhhHhhHHHHHHhcCCHHHHHHHHHHhHhc
Q 003249 381 QRLLAFHQLG--CVRLLRKEYDEAEHLFEAAVNAG----------H----IYSIAGLARLGYIKGHKLWAYEKLNSVISS 444 (836)
Q Consensus 381 ~~a~a~~~lG--~~~~~~g~y~eAi~~f~~Al~l~----------~----~~a~~~la~~~~~~G~~~~A~~~~~~ai~~ 444 (836)
+.+.+|..|+ .-.++.|.|++|...+++|++.. | ...+.+|+..+..+|++++++..-.
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~----- 79 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSAD----- 79 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHH-----
Confidence 4556676654 44678889999999999998752 1 1357888999999999988877643
Q ss_pred cCCchHHHHHhhhcCChhhHHHHHHHHHhcCCCChH----HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSY----PYMYRASSLMTKQNVEAALAEINRILG 507 (836)
Q Consensus 445 ~~~~~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~----ay~~rg~~l~~~g~~~eAi~~~~kai~ 507 (836)
.|+..|++==+|+-+.-. +-++||.++-.+|+.++|+..|+++-+
T Consensus 80 ------------------~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 80 ------------------RALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp ------------------HHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ------------------HHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 333334444444444333 335677777777777777777777654
No 259
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.095 Score=56.10 Aligned_cols=155 Identities=14% Similarity=0.002 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHH
Q 003249 484 YRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVR 562 (836)
Q Consensus 484 ~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~ 562 (836)
.-+.-+.+.|++.+|...|..++...|+ .++....+.+|...|+.++|..-+. ..|.....
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~----~lP~~~~~-------------- 200 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA----ALPLQAQD-------------- 200 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH----hCcccchh--------------
Confidence 3444566788888999999999998886 4666677888899999888776444 44443210
Q ss_pred HHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHH
Q 003249 563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHER 640 (836)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~--~~ea 640 (836)
+.|.....++.++.+.... ..+..+.+.+..||++..+.+.++..+...|++++|++.+-..++.+-. +.++
T Consensus 201 ---~~~~~l~a~i~ll~qaa~~---~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~ 274 (304)
T COG3118 201 ---KAAHGLQAQIELLEQAAAT---PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEA 274 (304)
T ss_pred ---hHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHH
Confidence 0000011112222222222 2345666777778888888888888888888888888777776665433 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 003249 641 LVYEGWILYDTSHCEEGLRKAE 662 (836)
Q Consensus 641 l~~~G~il~~~G~~eeAl~~~~ 662 (836)
--.+=.++.-.|.-+.+...|+
T Consensus 275 Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 275 RKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 3333334444444444443333
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.3 Score=52.92 Aligned_cols=162 Identities=11% Similarity=0.030 Sum_probs=116.4
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhc-cCCchHHHHHhhh----
Q 003249 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISS-VTPLGWMYQERSL---- 457 (836)
Q Consensus 385 a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~-~~~~~~ay~~r~~---- 457 (836)
-.|.-......+|++.+|-..+++.+..-|.+ ++...-.+++..|+...-...+.++|.. +++.+---+-.|.
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34455556778899999888899998876665 4444455677788887777778888777 4444221111222
Q ss_pred ---cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--h-HH--HHHHHHHHHhcCCHH
Q 003249 458 ---YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA--L-EC--LELRFCFFLALEDYQ 529 (836)
Q Consensus 458 ---~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~--~-~~--~~~rg~~~~~lg~~~ 529 (836)
.+.+++|...-++|+++||++..+....+.++-..|++.|+.+...+--..=-+ - .+ |-.-+.++.+.+.|+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 355589999999999999999999999999999999999999987765332111 1 22 223578899999999
Q ss_pred HHHHHHHHHH--hhCCCch
Q 003249 530 AALCDVQAIL--TLSPDYR 546 (836)
Q Consensus 530 ~Ai~d~~~al--~l~P~~~ 546 (836)
.|++-|++-| +++.+++
T Consensus 265 ~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 265 KALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHHHHHhhccch
Confidence 9999998755 3445553
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.51 E-value=0.084 Score=61.55 Aligned_cols=87 Identities=16% Similarity=0.123 Sum_probs=73.5
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYDTSHCEEGLRKAEES 664 (836)
Q Consensus 589 aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~----~eal~~~G~il~~~G~~eeAl~~~~~A 664 (836)
+...+..+.+..|+.+.-.+.+|.++...|+.++|++.|++++....+- +-.++.+||.+.-+++|++|...|.+.
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999988533333 335788999999999999999999999
Q ss_pred HhcccchHHHH
Q 003249 665 IQMKRSFEAFF 675 (836)
Q Consensus 665 i~l~p~~~a~~ 675 (836)
++.+....++|
T Consensus 332 ~~~s~WSka~Y 342 (468)
T PF10300_consen 332 LKESKWSKAFY 342 (468)
T ss_pred HhccccHHHHH
Confidence 98776655443
No 262
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.14 Score=52.88 Aligned_cols=65 Identities=20% Similarity=0.150 Sum_probs=45.9
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 481 PYMYRASSL-MTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 481 ay~~rg~~l-~~~g~~~eAi~~~~kai~l~P~-------~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
.+..+|.+| .++.+++.||..|.+|-+.-.. +.++...+..-..+|+|.+||.-|+++..-.-++
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345566666 3458889999999988875432 2344444556667899999999999988776655
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.47 E-value=0.033 Score=64.95 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-----LECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-----~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
+.|.+.+....+.-|+.+...+..|.++...|+.++||+.|++++..... .-+++.+|+++.-+++|++|..+|.
T Consensus 250 ~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 250 EEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 66888899999999999999999999999999999999999999965543 2456779999999999999999999
Q ss_pred HHHhhCC
Q 003249 537 AILTLSP 543 (836)
Q Consensus 537 ~al~l~P 543 (836)
+.++.+.
T Consensus 330 ~L~~~s~ 336 (468)
T PF10300_consen 330 RLLKESK 336 (468)
T ss_pred HHHhccc
Confidence 9988654
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.26 Score=53.33 Aligned_cols=168 Identities=12% Similarity=0.046 Sum_probs=79.8
Q ss_pred HHHHHhcCCCChHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCC---h-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003249 468 LDKATALDPTLSYPY-MYRASSLMTKQNVEAALAEINRILGFKLA---L-ECLELRFCFFLALEDYQAALCDVQAILTLS 542 (836)
Q Consensus 468 ~~kAi~ldP~~~~ay-~~rg~~l~~~g~~~eAi~~~~kai~l~P~---~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~ 542 (836)
.++...-||...-+. +..|.++...++--+=+..++++.--.-. . +-.+..+.+....|++.+|-...+|.|.--
T Consensus 54 a~kL~ssDP~~Vmart~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~ 133 (491)
T KOG2610|consen 54 AEKLSSSDPEAVMARTFALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDY 133 (491)
T ss_pred HHHHhcCChHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhC
Confidence 444455555544443 23455565555555555556665421111 1 122223455566677777777777777777
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhc-CCCCHHHHHHHH---HHHHHcC
Q 003249 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES-DAPKGVLYFRQS---LLLLRLN 618 (836)
Q Consensus 543 P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~-~P~~~~~~~~~g---l~l~~l~ 618 (836)
|.+..+.......+. -....++....+.+.+-. +|+.+-.-|-.| ..+...|
T Consensus 134 PtDlla~kfsh~a~f------------------------y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 134 PTDLLAVKFSHDAHF------------------------YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred chhhhhhhhhhhHHH------------------------hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 766433322111000 001122333444444444 444432222222 2344555
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003249 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~ 659 (836)
-|++|....++|+++||.|.-+....+-|+.-.|++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH
Confidence 55555555555555555555555555555555555555544
No 265
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.61 Score=49.18 Aligned_cols=164 Identities=12% Similarity=0.082 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHH-HHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQ-AALCDVQAI 538 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g-~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~-~Ai~d~~~a 538 (836)
..|++....+|.++|-+...|.+|-.++..++ +..+-+..++.+++-+|. ++.|+.|-.+...+|+.. .-++..+.+
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 55777788999999999999999998887665 466778888999999995 799999999888888888 777888888
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH-c
Q 003249 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR-L 617 (836)
Q Consensus 539 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~-l 617 (836)
|..+..+..++... .-.+.. ...|+ ..|...++.|+.|-.+-.+|..|-.+... .
T Consensus 140 l~~DaKNYHaWshR--qW~~r~----F~~~~------------------~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~ 195 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHR--QWVLRF----FKDYE------------------DELAYADELLEEDIRNNSAWNQRYFVITNTK 195 (318)
T ss_pred HhccccchhhhHHH--HHHHHH----HhhHH------------------HHHHHHHHHHHHhhhccchhheeeEEEEecc
Confidence 88877764433211 000000 00111 13666677777776666666666554433 2
Q ss_pred CCHH-----HHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 003249 618 NCPE-----AAMRSLQLARQHAASDHERLVYEGWILY 649 (836)
Q Consensus 618 ~~~~-----eAl~~~~~Al~l~P~~~eal~~~G~il~ 649 (836)
|=.+ .=+....+.|.+.|++..+|+++.-++.
T Consensus 196 ~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 196 GVISKAELERELNYTKDKILLVPNNESAWNYLKGLLE 232 (318)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 2222 2233455566666666666666555544
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.35 E-value=0.78 Score=50.78 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcccch-HHHHH
Q 003249 638 HERLVYEGWILYDT------SHCEEGLRKAEESIQMKRSF-EAFFL 676 (836)
Q Consensus 638 ~eal~~~G~il~~~------G~~eeAl~~~~~Ai~l~p~~-~a~~~ 676 (836)
+.++..+|.-...+ +..++++..|++|++++|+. .+++.
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 35666677776666 88888889999999888876 34443
No 267
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=3.9 Score=50.41 Aligned_cols=239 Identities=13% Similarity=0.038 Sum_probs=142.6
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-chh-----hhh
Q 003249 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPD-YRM-----FEG 550 (836)
Q Consensus 477 ~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~-~~~-----~~~ 550 (836)
+-+..|..+|.+..+.|...+||+.|-||= +|..|...-.+-.+.|.|++-+....-|-+--.. +.+ +|.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikad----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKAD----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcC----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 457889999999999999999999998873 3455566666777889999999888766543221 211 221
Q ss_pred hHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003249 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (836)
Q Consensus 551 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~A 630 (836)
+.. -++.+.+...--+.|+ ..+..|+-- -...+.+-.+-.++..-|-.++..+..+|+|+.|....++|
T Consensus 1178 kt~---rl~elE~fi~gpN~A~-i~~vGdrcf-------~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1178 KTN---RLTELEEFIAGPNVAN-IQQVGDRCF-------EEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred Hhc---hHHHHHHHhcCCCchh-HHHHhHHHh-------hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 111 1111111111111110 111111100 00111222222334455778899999999999999998887
Q ss_pred HHcCC-------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHH-HHHhhcc
Q 003249 631 RQHAA-------------------------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK-AYALADS 684 (836)
Q Consensus 631 l~l~P-------------------------~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~-a~aL~~~ 684 (836)
-.... -.++-+-.+-.-|.+.|.|+|=|..++.++.+.+.....|.. |+.+++
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk- 1325 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK- 1325 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh-
Confidence 53210 012223333445778999999999999999999887666664 443333
Q ss_pred ccCCCChhHHHHHHHHHhcCCccccc---hHHHHHHHHHHHHhcCCHHHHHH
Q 003249 685 SQDSSCSSTVVSLLEDALKCPSDRLR---KGQALNNLGSVYVDCGQLDLAAD 733 (836)
Q Consensus 685 ~l~~~~~~~~i~~l~~Al~~~~~~~~---~~~a~~nlG~~y~~~g~~deAi~ 733 (836)
..|+.-...+++++--+.+| +-+| .+..|..+-..|..-..||-|.-
T Consensus 1326 -ykp~km~EHl~LFwsRvNip-KviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1326 -YKPEKMMEHLKLFWSRVNIP-KVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred -cCHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 45666566666665544332 2222 24567788888877777776643
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.31 E-value=0.2 Score=57.15 Aligned_cols=27 Identities=15% Similarity=0.065 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003249 518 RFCFFLALEDYQAALCDVQAILTLSPD 544 (836)
Q Consensus 518 rg~~~~~lg~~~~Ai~d~~~al~l~P~ 544 (836)
+|.+..++|+.++||+.|+..++.+|.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 356667777777777777777777664
No 269
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.31 E-value=0.0041 Score=64.52 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=53.4
Q ss_pred ccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCc--ceeEecCCCCCHHHHHHHHHhhccCcCC
Q 003249 180 VLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLC--EDIDLSENNISPSGLRIISDFSVTGSLN 248 (836)
Q Consensus 180 ~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~--~~I~l~~~~is~~~~~~ll~f~Ytg~l~ 248 (836)
...||.++.....|++||++|+++||+|+.+.+++-.-... -.|..- |+.-.+|..+|+++|||+..
T Consensus 129 ~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~a--g~dm~~feafLh~l~tgEfg 197 (401)
T KOG2838|consen 129 VCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFA--GFDMDAFEAFLHSLITGEFG 197 (401)
T ss_pred eeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhh--ccChHHHHHHHHHHHhcccc
Confidence 44588888888999999999999999999988765311111 334444 79999999999999999887
No 270
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.24 E-value=0.0023 Score=69.97 Aligned_cols=119 Identities=21% Similarity=0.148 Sum_probs=94.2
Q ss_pred CeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHHH---HHHHHHHHHh
Q 003249 190 EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL---EILIFANKFC 266 (836)
Q Consensus 190 ~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v~---~lL~aA~~~c 266 (836)
+..|.+|+.+++++|+.|++|+.....+.....+++.+ .++..++.+..|.|+..-. ...+.+. .++.+++++-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d--~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~~ 185 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLE--EKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKYK 185 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccc--cchhhHhhhceEEEeccch-HHHHHhhcCChhhhhccccc
Confidence 56699999999999999999999988777777788884 9999999999999996554 3444454 7888999999
Q ss_pred HHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q 003249 267 CERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFL 312 (836)
Q Consensus 267 ~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~ 312 (836)
.+.|+..|.+.+++.+. ...+...+..+..+....+...|+.+..
T Consensus 186 ~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 230 (297)
T KOG1987|consen 186 NRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIA 230 (297)
T ss_pred cHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHh
Confidence 99999999999988764 3344445555555566667777776654
No 271
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.23 E-value=0.12 Score=49.90 Aligned_cols=61 Identities=26% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
+....+..+...|++++|++.+++++.++|-+..++..+-.+|..+|+..+|+..|++..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4455666788999999999999999999999999999999999999999999999998864
No 272
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.21 E-value=1.1 Score=53.05 Aligned_cols=61 Identities=15% Similarity=0.292 Sum_probs=43.3
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHH------HHcCC----ch---hHHhhHHHHHHhcCCHHHHHHHHH
Q 003249 708 RLRKGQALNNLGSVYVDCGQLDLAADCYSN------ALKIR----HT---RAHQGLARVHFLKNNKTTAYEEMT 768 (836)
Q Consensus 708 ~~~~~~a~~nlG~~y~~~g~~deAi~~y~k------AL~l~----~~---~A~~~la~~~~~~g~~~~A~~~~~ 768 (836)
.+-+++.|-.-|.+|.+..++++|++||++ |+++. |. ......|.-+...|+++.|+..|-
T Consensus 657 alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfi 730 (1636)
T KOG3616|consen 657 ALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFI 730 (1636)
T ss_pred HHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHH
Confidence 344578888899999999999999999875 45542 22 233445556677788888876653
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.19 E-value=0.0052 Score=44.73 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 640 al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
+|.++|.++.++|++++|++.|++++.+.++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999998876543
No 274
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.10 E-value=0.054 Score=52.38 Aligned_cols=61 Identities=20% Similarity=0.080 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 480 ~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
.+...++..+...|++++|+..+.+++.++|-. .++..+-.+|..+|+..+|++.|++.-+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456667778888999999999999999999965 4566678889999999999998887654
No 275
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.98 E-value=8 Score=51.96 Aligned_cols=368 Identities=12% Similarity=-0.005 Sum_probs=197.3
Q ss_pred HHHHHHhhccchHHHHHHHHHH-Hh---ccchhhHhhH-HHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChh
Q 003249 388 QLGCVRLLRKEYDEAEHLFEAA-VN---AGHIYSIAGL-ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD 462 (836)
Q Consensus 388 ~lG~~~~~~g~y~eAi~~f~~A-l~---l~~~~a~~~l-a~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~ 462 (836)
.++.+-+.+|.|..|+-++++- .. .+-..++..+ =.+|...+++++-...... ....|++-.-....-..+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHHHHHHHhhccHH
Confidence 4777888899999999888873 11 1111122222 2256666665443332211 112233322222222335558
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHH-HHHHhcCCHHHHHHHHHHHHh
Q 003249 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRF-CFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 463 eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg-~~~~~lg~~~~Ai~d~~~al~ 540 (836)
.|.++|+++++.+|+....+...-......|.++..|...+-.+.-.++ .+.+++.| .+--..++++.--....
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---- 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---- 1542 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh----
Confidence 9999999999999999888888888888899999999877777665553 45555544 23355666655443322
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccc---hHHHHHHHHhcCCCCHH----HHHHHHHH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG---SLSVIYQMLESDAPKGV----LYFRQSLL 613 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~---aL~~~~~al~~~P~~~~----~~~~~gl~ 613 (836)
+.+...+-.+ +..++.-+...-|.+. .++. -+.+.++|-.+- .|.+--..
T Consensus 1543 -~~n~e~w~~~---------------------~~g~~ll~~~~kD~~~~~~~i~~-~r~~~i~~lsa~s~~~Sy~~~Y~~ 1599 (2382)
T KOG0890|consen 1543 -DRNIEYWSVE---------------------SIGKLLLRNKKKDEIATLDLIEN-SRELVIENLSACSIEGSYVRSYEI 1599 (2382)
T ss_pred -cccccchhHH---------------------HHHHHHHhhcccchhhHHHHHHH-HHHHhhhhHHHhhccchHHHHHHH
Confidence 1111111111 0000000000000000 0000 011111110000 00000001
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCC
Q 003249 614 LLRLNCPEAAMRSLQLARQHAASDH-----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 688 (836)
Q Consensus 614 l~~l~~~~eAl~~~~~Al~l~P~~~-----eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~ 688 (836)
..++...-+=.......-+..|++- +-|.+|+..=...++..|=|-.+++++-.- ..++
T Consensus 1600 ~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~----------------~~~~ 1663 (2382)
T KOG0890|consen 1600 LMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDL----------------RMRS 1663 (2382)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHH----------------hccc
Confidence 1111100000011111112222222 234444444334444444444555554110 0000
Q ss_pred CChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHHHHhcCCHHHHHHHHH
Q 003249 689 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMT 768 (836)
Q Consensus 689 ~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~~g~~~~A~~~~~ 768 (836)
.-..+.+..|.+.+.+-...|+++.|-.+.-+|.+...+.++.-+|..++.+|+-..|+...+
T Consensus 1664 -----------------~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1664 -----------------NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQ 1726 (2382)
T ss_pred -----------------cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHH
Confidence 011234789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC-----------HH------HHHHHH----HccC--HHHHHHHHHHhHhcCCCCcccchhhHH
Q 003249 769 KLIKKARNN-----------AS------AYEKRS----EYCD--RELTRADLEMVTQLDPLRVYPYRYRAA 816 (836)
Q Consensus 769 kaie~~p~~-----------a~------Ay~~r~----~~~~--~~~A~~D~~~Ai~l~P~~~~~y~~r~~ 816 (836)
+.++++-.+ -. |..+-+ +.|+ -..-+.-|.+|++++|..-..|.+=|.
T Consensus 1727 ~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1727 EILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred HHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHH
Confidence 999876322 11 111111 1233 234567789999999988889888883
No 276
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.91 E-value=0.038 Score=62.13 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhcccchHHHHHHHHHhhcc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES-IQMKRSFEAFFLKAYALADS 684 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~A-i~l~p~~~a~~~~a~aL~~~ 684 (836)
.|.-+++ +.......|.+-...+..+..+.+.++......+|-.|++.+|.+....+ |.-.|.+.
T Consensus 210 ~ykVr~l--lq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~------------ 275 (696)
T KOG2471|consen 210 LYKVRFL--LQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT------------ 275 (696)
T ss_pred HhhHHHH--HHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc------------
Confidence 3444555 44556778888888899999999999999999999999999998754433 11112110
Q ss_pred ccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHc---------CCc-----------h
Q 003249 685 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK---------IRH-----------T 744 (836)
Q Consensus 685 ~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~---------l~~-----------~ 744 (836)
+-|+ .-....|||+|.+++..|.|..++-.|.+||+ ++| -
T Consensus 276 -~T~q-------------------~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~ 335 (696)
T KOG2471|consen 276 -ITPQ-------------------LSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSM 335 (696)
T ss_pred -ccch-------------------hhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccch
Confidence 0011 01135789999999999999999999999996 122 1
Q ss_pred hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHc
Q 003249 745 RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY 787 (836)
Q Consensus 745 ~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~ 787 (836)
...+|.|..++-.|+...|...|.++...-..|+.-|....+-
T Consensus 336 eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 336 EILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred hhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4679999999999999999999999999999999999887654
No 277
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.82 E-value=0.24 Score=46.02 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=68.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccch---HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHH
Q 003249 646 WILYDTSHCEEGLRKAEESIQMKRSF---EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVY 722 (836)
Q Consensus 646 ~il~~~G~~eeAl~~~~~Ai~l~p~~---~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y 722 (836)
.-...-|.|++|...+++|+.+.+.. ++|=..++ .+-.|.-|..++
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GF-------------------------------DA~chA~Ls~A~ 65 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGF-------------------------------DAFCHAGLSGAL 65 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccH-------------------------------HHHHHHHHHHHH
Confidence 33456699999999999999876432 22211111 134677888999
Q ss_pred HhcCCHHHHHHHHHHHHc-------CCch------hHHhhHHHHHHhcCCHHHHHHHHHHHHH
Q 003249 723 VDCGQLDLAADCYSNALK-------IRHT------RAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (836)
Q Consensus 723 ~~~g~~deAi~~y~kAL~-------l~~~------~A~~~la~~~~~~g~~~~A~~~~~kaie 772 (836)
..+|+|++++..-.+||. ++.+ .+.+++|.++...|+.++|+..|.++-|
T Consensus 66 ~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 66 AGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 999999998887777765 4332 4789999999999999999999999875
No 278
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.54 Score=49.06 Aligned_cols=176 Identities=14% Similarity=0.051 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 003249 480 YPYMYRASSLMTKQNVEAALAEINRILGFK---LAL----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (836)
Q Consensus 480 ~ay~~rg~~l~~~g~~~eAi~~~~kai~l~---P~~----~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~ 552 (836)
..|..-++.+...++|+.|-..+.||++-. -++ .++..-|.+..++..+.++...|++|..+--.+.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G------ 105 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG------ 105 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC------
Confidence 446666778888899999999999998432 221 2234456677778888888888888887632210
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003249 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (836)
Q Consensus 553 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~ 632 (836)
. |+-+-.-..++-=.++.-.+++|+..|++++.
T Consensus 106 --------------s---------------------------------pdtAAmaleKAak~lenv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 106 --------------S---------------------------------PDTAAMALEKAAKALENVKPDDALQLYQRALA 138 (308)
T ss_pred --------------C---------------------------------cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 0 11111111111112333445556666655554
Q ss_pred cCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCc
Q 003249 633 HAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (836)
Q Consensus 633 l~P~~------~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~ 706 (836)
+--.+ .+.+-..|.+|....+|+||-..+.+-..+.-...+ +
T Consensus 139 vve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~-------y------------------------- 186 (308)
T KOG1585|consen 139 VVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA-------Y------------------------- 186 (308)
T ss_pred HHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh-------c-------------------------
Confidence 32211 234556678888889999987655554432111100 0
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003249 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (836)
Q Consensus 707 ~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~ 742 (836)
....-++...-.+|.-..+|..|..||+..-++.
T Consensus 187 --~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 187 --NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred --ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 0012234444455666679999999999988873
No 279
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.78 E-value=0.012 Score=41.32 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 639 eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
++++++|+++.++|++++|++.|++.++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 47788888888888888888888888877664
No 280
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=0.32 Score=49.16 Aligned_cols=85 Identities=24% Similarity=0.148 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhcCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTL---SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAI 538 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~---~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~a 538 (836)
++|+..++.++..--+. +-+-.++|.++.++|++|+|+..++..-+-+-.+-....||-++..+||-++|...|.++
T Consensus 106 d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 106 DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHH
Confidence 55555566555432222 124467899999999999999988876532222333556999999999999999999999
Q ss_pred HhhCCCch
Q 003249 539 LTLSPDYR 546 (836)
Q Consensus 539 l~l~P~~~ 546 (836)
++.+++..
T Consensus 186 l~~~~s~~ 193 (207)
T COG2976 186 LESDASPA 193 (207)
T ss_pred HHccCChH
Confidence 99987653
No 281
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.72 E-value=1 Score=48.85 Aligned_cols=146 Identities=15% Similarity=0.058 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcc-cc-hHHH
Q 003249 605 VLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMK-RS-FEAF 674 (836)
Q Consensus 605 ~~~~~~gl~l~~----l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~----~G~~eeAl~~~~~Ai~l~-p~-~~a~ 674 (836)
.+.+..+..+.. ..+..+|+..|+ ...+..++++.+++|.++.. ..+..+|...|++|.+.. +. ..+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 344445554443 334677888888 45566678888888888876 448888888888888774 22 2223
Q ss_pred HHHHHHhhccc--c-CCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCchhHH
Q 003249 675 FLKAYALADSS--Q-DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAH 747 (836)
Q Consensus 675 ~~~a~aL~~~~--l-~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~----~g~~deAi~~y~kAL~l~~~~A~ 747 (836)
+..+..+.... . -+.....+...+.+|.... .+.+..++|..|.. ..++.+|+.-|.+|-+..+..++
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-----~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~ 226 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-----NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAAC 226 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHH
Confidence 44443333221 0 1111224455555554432 24677888877754 33788888888888887777777
Q ss_pred hhHHHHHHhcC
Q 003249 748 QGLARVHFLKN 758 (836)
Q Consensus 748 ~~la~~~~~~g 758 (836)
+.++ +++..|
T Consensus 227 ~~~~-~~~~~g 236 (292)
T COG0790 227 YNLG-LMYLNG 236 (292)
T ss_pred HHHH-HHHhcC
Confidence 7777 666555
No 282
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.51 E-value=0.016 Score=39.00 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 639 eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
.+++.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677777777778888888888777777664
No 283
>PRK10941 hypothetical protein; Provisional
Probab=95.33 E-value=0.096 Score=56.32 Aligned_cols=59 Identities=15% Similarity=0.037 Sum_probs=30.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 613 ~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
++.+.++++.|+++.+..+.++|+++.-+--||.+|.++|.+..|+.+++.-|+.-|+.
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 34445555555555555555555555555555555555555555555555555554444
No 284
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.27 E-value=0.043 Score=62.20 Aligned_cols=35 Identities=17% Similarity=0.013 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE 639 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e 639 (836)
.+||.++.++..++++.+|+.+...+....|.+..
T Consensus 446 kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 446 KAHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 34555555556666666666666666666665443
No 285
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.25 E-value=0.027 Score=37.73 Aligned_cols=30 Identities=33% Similarity=0.338 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003249 515 LELRFCFFLALEDYQAALCDVQAILTLSPD 544 (836)
Q Consensus 515 ~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~ 544 (836)
+..+|.++..+|++++|+..|+++++++|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444555555556666666666666555554
No 286
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=4.2 Score=50.08 Aligned_cols=143 Identities=15% Similarity=0.101 Sum_probs=89.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--cchHHHHHHH
Q 003249 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK--RSFEAFFLKA 678 (836)
Q Consensus 601 P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~--p~~~a~~~~a 678 (836)
-+.+..|-..|.+.+..|...+|+++|-+| +||..|...-.+-.+.|.||+=+.....|=+-- |..+.- ..
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~e--Li 1173 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSE--LI 1173 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHH--HH
Confidence 356789999999999999999999999775 888899999999999999999998887775432 333321 22
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHHHHhcC
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKN 758 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~~g 758 (836)
+++++++. +..+|+-+.-+.. .-....|.-.++.|.|+.|.-+|+.. ..+..+|..+..+|
T Consensus 1174 ~AyAkt~r--------l~elE~fi~gpN~-----A~i~~vGdrcf~~~~y~aAkl~y~~v------SN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1174 FAYAKTNR--------LTELEEFIAGPNV-----ANIQQVGDRCFEEKMYEAAKLLYSNV------SNFAKLASTLVYLG 1234 (1666)
T ss_pred HHHHHhch--------HHHHHHHhcCCCc-----hhHHHHhHHHhhhhhhHHHHHHHHHh------hhHHHHHHHHHHHH
Confidence 23333331 1223333322111 12334555566666666666666432 22334555555666
Q ss_pred CHHHHHHHHHH
Q 003249 759 NKTTAYEEMTK 769 (836)
Q Consensus 759 ~~~~A~~~~~k 769 (836)
+|+.|.+.-.|
T Consensus 1235 eyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1235 EYQGAVDAARK 1245 (1666)
T ss_pred HHHHHHHHhhh
Confidence 66666554444
No 287
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.14 E-value=0.66 Score=51.43 Aligned_cols=30 Identities=13% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~l~ 742 (836)
..+..+.....+.|-.+.|+..++-.++++
T Consensus 155 ~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 155 YVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 466777888889999999999999999974
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.98 E-value=0.037 Score=38.66 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003249 514 CLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (836)
Q Consensus 514 ~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~ 544 (836)
+++..|.++..+|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566677777777777777777777777775
No 289
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.97 E-value=5.7 Score=48.58 Aligned_cols=227 Identities=17% Similarity=0.115 Sum_probs=145.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHH
Q 003249 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (836)
Q Consensus 517 ~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~a 596 (836)
..+|.....+++.+|-....++-..-|.-.. ...+ .+
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~--~~~~------~l----------------------------------- 456 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMH--SRQG------DL----------------------------------- 456 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcc--cchh------hH-----------------------------------
Confidence 3578888899999998888887766554211 0000 00
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-----RLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 597 l~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e-----al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+..---+|.+....|++++|++..+.++..=|.+.. ++...|.+..-.|++++|+..-.++.++.+..
T Consensus 457 ------~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 457 ------LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred ------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 0111223566777889999999999999988777643 56778999999999999999999999887666
Q ss_pred HHHHHHHHHh-------hccccCCCChhHHHHH------HHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 672 EAFFLKAYAL-------ADSSQDSSCSSTVVSL------LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 738 (836)
Q Consensus 672 ~a~~~~a~aL-------~~~~l~~~~~~~~i~~------l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kA 738 (836)
+.+|....++ ...| ....+... .++-++. .+..+-+.--++.++...-+++++.....++
T Consensus 531 ~~~~l~~~~~~~~s~il~~qG----q~~~a~~~~~~~~~~~q~l~q---~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~ 603 (894)
T COG2909 531 DVYHLALWSLLQQSEILEAQG----QVARAEQEKAFNLIREQHLEQ---KPRHEFLVRIRAQLLRAWLRLDLAEAEARLG 603 (894)
T ss_pred ccHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHhhh---cccchhHHHHHHHHHHHHHHHhhhhHHhhhc
Confidence 5555544332 2222 11111111 0110110 0111223445555666666699999999999
Q ss_pred HcCCch---------hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHH----ccCHHHHHHHHH
Q 003249 739 LKIRHT---------RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN-------ASAYEKRSE----YCDRELTRADLE 798 (836)
Q Consensus 739 L~l~~~---------~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~-------a~Ay~~r~~----~~~~~~A~~D~~ 798 (836)
+++... .+...+|.+...+|+.++|...+...-..-.+. +.++.-+.. .||+++|..+..
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 604 IEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 887311 234589999999999999998888877554333 233333332 388888888887
Q ss_pred H
Q 003249 799 M 799 (836)
Q Consensus 799 ~ 799 (836)
+
T Consensus 684 ~ 684 (894)
T COG2909 684 K 684 (894)
T ss_pred h
Confidence 7
No 290
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=1.7 Score=48.74 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCchh-hhhhHHHHHHHHHHHHHhhhHh
Q 003249 494 NVEAALAEINRILGFKLA-LECLELRFCFFLALED--YQAALCDVQAILTLSPDYRM-FEGRVAASQLHMLVREHIDNWT 569 (836)
Q Consensus 494 ~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~--~~~Ai~d~~~al~l~P~~~~-~~~~~~~~~~~~~l~~~~~~~~ 569 (836)
-.++-+.....+++.+|+ +-+|+.|-+++.+.+. +..=++-.++++++||.+-. ++.|.-. .+..
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV-------~~~~---- 158 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFV-------VEQA---- 158 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHH-------HHHH----
Confidence 456667777778888886 5778888888776543 57777888888888887644 3333211 1110
Q ss_pred HHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH------cC------CHHHHHHHHHHHHHcCCCC
Q 003249 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR------LN------CPEAAMRSLQLARQHAASD 637 (836)
Q Consensus 570 ~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~------l~------~~~eAl~~~~~Al~l~P~~ 637 (836)
.+.. ....+.+...+++|..++.+-.+|..|..++.. .| -...=++....|+--+|+|
T Consensus 159 ---------~~~~-~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~D 228 (421)
T KOG0529|consen 159 ---------ERSR-NLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPED 228 (421)
T ss_pred ---------hccc-ccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccc
Confidence 0111 123345888899999999999999999998873 23 1233456678888899999
Q ss_pred HHHHHHHHHHHHh
Q 003249 638 HERLVYEGWILYD 650 (836)
Q Consensus 638 ~eal~~~G~il~~ 650 (836)
..+|.+.-|.+-.
T Consensus 229 qS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 229 QSCWFYHRWLLGR 241 (421)
T ss_pred cceeeehHHhhcc
Confidence 9999998887765
No 291
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.91 E-value=0.98 Score=48.93 Aligned_cols=80 Identities=14% Similarity=-0.073 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC-----------
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLALE----------- 526 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~----~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg----------- 526 (836)
..|+..|.+|-+.. +..+..++|..|.. ..++.+|+..|.+|-+... ..+.++.+ ++..-|
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcCCCchhhhhccc
Confidence 36777788877776 78889999987754 4478999999999999887 66667777 555444
Q ss_pred ----CHHHHHHHHHHHHhhCCCc
Q 003249 527 ----DYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 527 ----~~~~Ai~d~~~al~l~P~~ 545 (836)
+...|...|+++...-+..
T Consensus 248 ~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 248 AKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred ccCCCHHHHHHHHHHHHHcCChh
Confidence 8888888888888777655
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.78 E-value=7.4 Score=42.13 Aligned_cols=163 Identities=12% Similarity=0.016 Sum_probs=94.4
Q ss_pred HhcCCHHHHHHHHHHHHhcC----CCh-----HHHHHHHHHHHhcC-CHHHHHHHHHHHHhh----CC---Cchhh-hhh
Q 003249 490 MTKQNVEAALAEINRILGFK----LAL-----ECLELRFCFFLALE-DYQAALCDVQAILTL----SP---DYRMF-EGR 551 (836)
Q Consensus 490 ~~~g~~~eAi~~~~kai~l~----P~~-----~~~~~rg~~~~~lg-~~~~Ai~d~~~al~l----~P---~~~~~-~~~ 551 (836)
.++|+++.|...|.|+=.+. |+. ..+|+.|.-..+.+ ++++|+..+++|..+ .+ ....+ ..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888886654 321 34677788888888 999999999999888 22 11111 111
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccc-hHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003249 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG-SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (836)
Q Consensus 552 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~A 630 (836)
......+. ..+-.++..+... ++..+..+-.-.|+++..++-.-.++.+.++.+++.+.+.++
T Consensus 84 ~~iL~~La----------------~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 84 LSILRLLA----------------NAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHHH----------------HHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 11111111 1112222222221 344455555566888888866666777789999999999999
Q ss_pred HHcCC-CCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcc
Q 003249 631 RQHAA-SDHERLVYEGWI-LYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 631 l~l~P-~~~eal~~~G~i-l~~~G~~eeAl~~~~~Ai~l~ 668 (836)
+..-+ .+...-.-++.+ ..-......|..++.+.|.-.
T Consensus 148 i~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 148 IRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNR 187 (278)
T ss_pred HHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 98654 222211112222 112233456777777777443
No 293
>PRK10941 hypothetical protein; Provisional
Probab=94.75 E-value=0.11 Score=55.91 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=55.7
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003249 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (836)
Q Consensus 588 ~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~i 647 (836)
.+|.+.+..+.++|+++..+.-||+++.++|++..|+.+++.-++..|+++.+-.-+-++
T Consensus 199 ~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 199 LALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999997655554
No 294
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.72 E-value=0.25 Score=44.09 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--H-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL--E-CLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 464 Ai~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~--~-~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
.+..+.++++-+|++..+.+.+|..+...|++++|++.+-.+++-+|+. + +-...-.++..+|.-+.-...|++-+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4667899999999999999999999999999999999999999999864 2 22223445666666555555555543
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.70 E-value=0.064 Score=42.79 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
+++|.++..+.++|+|++|.+..+++|+++|++..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 46788999999999999999999999999999965
No 296
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.62 E-value=0.041 Score=40.60 Aligned_cols=29 Identities=38% Similarity=0.528 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+++|+|.+|..+|++++|+..+++|+++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57899999999999999999999999987
No 297
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.53 E-value=8.5 Score=41.67 Aligned_cols=100 Identities=15% Similarity=0.082 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhcc-chHHHHHHHHHHHhc----cchh------------hHhhHHHHHHhcCCHHHHHHHHHHhHhc
Q 003249 382 RLLAFHQLGCVRLLRK-EYDEAEHLFEAAVNA----GHIY------------SIAGLARLGYIKGHKLWAYEKLNSVISS 444 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g-~y~eAi~~f~~Al~l----~~~~------------a~~~la~~~~~~G~~~~A~~~~~~ai~~ 444 (836)
-+..+|+.|......+ ++++|..|+++|.++ .... .+..++.++...+..+
T Consensus 34 La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~------------ 101 (278)
T PF08631_consen 34 LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYE------------ 101 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChH------------
Confidence 3468899999999999 999999999999886 1100 1222333333322221
Q ss_pred cCCchHHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 445 VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF 508 (836)
Q Consensus 445 ~~~~~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l 508 (836)
..++|....+.+-.--|+.+..+.-.=.++...++.+++-+.+.++|.-
T Consensus 102 ---------------~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 102 ---------------SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ---------------HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1134455555555666777777644444555578888888888888864
No 298
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.42 E-value=17 Score=44.71 Aligned_cols=266 Identities=12% Similarity=-0.024 Sum_probs=158.9
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhccchh-h---HhhHHHHHHhcCCHHHHHHHHHH----hHhccCC----chHH
Q 003249 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY-S---IAGLARLGYIKGHKLWAYEKLNS----VISSVTP----LGWM 451 (836)
Q Consensus 384 ~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~-a---~~~la~~~~~~G~~~~A~~~~~~----ai~~~~~----~~~a 451 (836)
.-+++-.....+.|...+||+. |+..+.+. + .-+.+--....++..--+.+.+. ++..+|. .+|.
T Consensus 348 ~lH~~Aa~w~~~~g~~~eAI~h---AlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~ 424 (894)
T COG2909 348 ELHRAAAEWFAEHGLPSEAIDH---ALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWL 424 (894)
T ss_pred HHHHHHHHHHHhCCChHHHHHH---HHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHH
Confidence 4455555667778888888653 44443221 1 11111112333332222222221 2344554 3555
Q ss_pred HHHhhhcCChhhHHHHHHHHHhcCCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh------HHHH
Q 003249 452 YQERSLYCEGDKRWEDLDKATALDPT---------LSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL------ECLE 516 (836)
Q Consensus 452 y~~r~~~~~~~eAi~d~~kAi~ldP~---------~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~------~~~~ 516 (836)
......+ .||-...+++-.--|. .+..---+|.+....|+.++|++.-+.++..=|.. .++.
T Consensus 425 ~~s~~r~---~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 425 LASQHRL---AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHccCh---HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 5555555 4554444444333332 23445568999999999999999999999987732 3456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHH
Q 003249 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (836)
Q Consensus 517 ~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~a 596 (836)
..|.+..-.|++++|+..-+++.++.-.+-.++..+-.....-.+-+..++-..+..- . ..--...+-
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~-~-----------~~~~~~~q~ 569 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQE-K-----------AFNLIREQH 569 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHH-H-----------HHHHHHHHH
Confidence 6789999999999999999999998766544443322222222222222211111100 0 001234455
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH------AASDHER-LVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 597 l~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l------~P~~~ea-l~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
+...|-...+..-++.++..-.++++|.....+.+++ .|-++-+ ++.++.+.+.+|++++|....++...+
T Consensus 570 l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 570 LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6667777777777888777777799999888888864 3333333 347888999999999999888777655
No 299
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=1.4 Score=47.49 Aligned_cols=124 Identities=19% Similarity=0.083 Sum_probs=88.2
Q ss_pred HHHHHHhhccchHHHHHHHHHHHhccc--hhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchH-HHHHh-hhcCCh--
Q 003249 388 QLGCVRLLRKEYDEAEHLFEAAVNAGH--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGW-MYQER-SLYCEG-- 461 (836)
Q Consensus 388 ~lG~~~~~~g~y~eAi~~f~~Al~l~~--~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~-ay~~r-~~~~~~-- 461 (836)
..|.-....|++.+|...|..++...+ ..+..++++++...|+.+.|-..+...-.......+ ....+ ..+...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 445567888999999999999998754 457789999999999998888777653222221111 11111 111000
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA 511 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~ 511 (836)
-.-+.++.+.+.-||++.++-+.+|..+...|+.++|++.+-..++.+-+
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 11235688888999999999999999999999999999988888877653
No 300
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=94.32 E-value=0.2 Score=45.84 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=57.3
Q ss_pred EEEEe-CCeEEehhHHHHhhcCHHHHHhhcCCCCcCC-cceeEecCCCCCHHHHHHHHHhhccCcCCC------------
Q 003249 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESL-CEDIDLSENNISPSGLRIISDFSVTGSLNG------------ 249 (836)
Q Consensus 184 V~~~v-~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~-~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~------------ 249 (836)
|+++- +|.+|...+.+. ..|..++.|+.+...+.. ...|.|+ +|+..+|+.+++|++.-.-..
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 55554 788999999976 689999999976433222 2578888 699999999999998543211
Q ss_pred ------CCHHHHHHHHHHHHHH
Q 003249 250 ------VTPNLLLEILIFANKF 265 (836)
Q Consensus 250 ------~~~~~v~~lL~aA~~~ 265 (836)
++.+.+.+|+.||+++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL 102 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYL 102 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 3445677777777753
No 301
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.15 E-value=1.2 Score=48.44 Aligned_cols=130 Identities=9% Similarity=0.020 Sum_probs=82.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccC
Q 003249 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD-TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD 687 (836)
Q Consensus 609 ~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~-~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~ 687 (836)
.......+.+..++|...|.+|++-.+-..+.|..-+.+-+. .++.+-|...|+.+++.-|...
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~--------------- 70 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP--------------- 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H---------------
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH---------------
Confidence 333444455557888888888887767778888888888777 4555558888888887655442
Q ss_pred CCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-----hHHhhHHHHHHhcCCHHH
Q 003249 688 SSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTT 762 (836)
Q Consensus 688 ~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-----~A~~~la~~~~~~g~~~~ 762 (836)
+.|.....-+...|+.+.|...|++++..-+. ..+......-..-|+.+.
T Consensus 71 -------------------------~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~ 125 (280)
T PF05843_consen 71 -------------------------DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLES 125 (280)
T ss_dssp -------------------------HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHH
T ss_pred -------------------------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHH
Confidence 33444445556677788888888888775222 133344444555677777
Q ss_pred HHHHHHHHHHhcCCCH
Q 003249 763 AYEEMTKLIKKARNNA 778 (836)
Q Consensus 763 A~~~~~kaie~~p~~a 778 (836)
...-+.++.+.-|+..
T Consensus 126 v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 126 VRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHhhhhh
Confidence 7777777777777654
No 302
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.08 E-value=0.15 Score=54.48 Aligned_cols=71 Identities=15% Similarity=0.036 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHH
Q 003249 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKA 678 (836)
Q Consensus 608 ~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a 678 (836)
.+.+.-..+.|+.++|+..|..|+.++|.+++++...|...-.-.+.-+|=.+|-+|+.+.|++ +|.-+++
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3444445789999999999999999999999999999999988899999999999999999987 5555543
No 303
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.98 E-value=0.37 Score=50.13 Aligned_cols=98 Identities=19% Similarity=0.273 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHH----cC-C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCC
Q 003249 618 NCPEAAMRSLQLARQ----HA-A--SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSC 690 (836)
Q Consensus 618 ~~~~eAl~~~~~Al~----l~-P--~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~ 690 (836)
..+++|++.|..|+- .. + .-+..+..++|++.++|+-++....+++|+. +|.+++...+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~-------~y~~a~~~e~~~~---- 159 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALE-------FYEEAYENEDFPI---- 159 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHH-------HHHHHHHhCcCCC----
Confidence 345556665555552 11 1 2255678899999999998888888888875 3444443322211
Q ss_pred hhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003249 691 SSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (836)
Q Consensus 691 ~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~ 742 (836)
.........+-+|.++...|++++|+..|.+.+.-.
T Consensus 160 ----------------~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 160 ----------------EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred ----------------CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 122234678899999999999999999999999863
No 304
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.89 E-value=0.49 Score=43.57 Aligned_cols=106 Identities=9% Similarity=0.027 Sum_probs=70.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHH
Q 003249 518 RFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (836)
Q Consensus 518 rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al 597 (836)
++.-++..|++-+|++-.+..+...++....+. .....+.+ .+.++-
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~---lh~~QG~i------------------------------f~~lA~ 48 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWL---LHRLQGTI------------------------------FYKLAK 48 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHH---HHHHHhHH------------------------------HHHHHH
Confidence 456688899999999999999999988753210 00011111 111111
Q ss_pred hc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 598 ES-DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 598 ~~-~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
.. ||+--..| .-.|+++|.++..+.|..+-.++.+|.=+--.-.|++++...++++.+.
T Consensus 49 ~ten~d~k~~y------------Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 49 KTENPDVKFRY------------LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred hccCchHHHHH------------HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 11 23222222 2357889999999999998888888887766777888888888888763
No 305
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.71 E-value=0.46 Score=42.36 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003249 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (836)
Q Consensus 590 L~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~ 637 (836)
+..+.+.++.+|++..+.+.++..+...|++++|++.+-.+++.+|++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 344455555555555555555555555555555555555555555443
No 306
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.65 E-value=0.19 Score=57.17 Aligned_cols=87 Identities=13% Similarity=-0.056 Sum_probs=77.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 589 SLSVIYQMLESDAPKGVLYFRQSLLLLR---LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 589 aL~~~~~al~~~P~~~~~~~~~gl~l~~---l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai 665 (836)
++..|.++++.-|.....+.+++.++.+ .|+.-.|+++...|++++|....+++.+..++..++++.+|+++...+.
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 5788899999999999999999998887 5677889999999999999999999999999999999999999888777
Q ss_pred hcccchHHHH
Q 003249 666 QMKRSFEAFF 675 (836)
Q Consensus 666 ~l~p~~~a~~ 675 (836)
.-.|...|.-
T Consensus 473 ~~~Ptd~a~~ 482 (758)
T KOG1310|consen 473 MSFPTDVARQ 482 (758)
T ss_pred hcCchhhhhh
Confidence 7778654433
No 307
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.64 E-value=0.18 Score=53.87 Aligned_cols=44 Identities=14% Similarity=0.054 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 003249 494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (836)
Q Consensus 494 ~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~ 551 (836)
+..||+...+.|.+ ....|+.++|..-|+.|+.++|++++.+..
T Consensus 112 ~~kEA~~Al~~A~~--------------~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e 155 (472)
T KOG3824|consen 112 KVKEAILALKAAGR--------------SRKDGKLEKAMTLFEHALALAPTNPQILIE 155 (472)
T ss_pred hhHHHHHHHHHHHH--------------HHhccchHHHHHHHHHHHhcCCCCHHHHHH
Confidence 45666666555543 346789999999999999999998765544
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.55 E-value=0.12 Score=38.04 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 638 ~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
+.++.++|.+|..+|++++|+..+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578999999999999999999999999874
No 309
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=1.1 Score=52.05 Aligned_cols=126 Identities=16% Similarity=0.024 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCCChHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHH-HH
Q 003249 464 RWEDLDKATALDPTLSYPYMY--RASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA-IL 539 (836)
Q Consensus 464 Ai~d~~kAi~ldP~~~~ay~~--rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~-al 539 (836)
++..+...+.++|.+...... +...+...+....|+..+..++..||+ ..+..++|.+....|....|+.++.+ +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344456666677877766433 577788888898899999999999996 57788888777777777777777776 88
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003249 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (836)
Q Consensus 540 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~ 619 (836)
...|++.++.+.... ++..|..+..+|+
T Consensus 130 ~~~~~~~~~~~~~~~----------------------------------------------------~~~~~~~~~~l~~ 157 (620)
T COG3914 130 WLSPDNAEFLGHLIR----------------------------------------------------FYQLGRYLKLLGR 157 (620)
T ss_pred hcCcchHHHHhhHHH----------------------------------------------------HHHHHHHHHHhcc
Confidence 999998765543211 1113334455677
Q ss_pred HHHHHHHHHHHHHcCCCCHHHH
Q 003249 620 PEAAMRSLQLARQHAASDHERL 641 (836)
Q Consensus 620 ~~eAl~~~~~Al~l~P~~~eal 641 (836)
..+|.....++..+.|.++...
T Consensus 158 ~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 158 TAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred HHHHHHHHHHHHHhhhhhhhhH
Confidence 7777777777777777775544
No 310
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.50 E-value=0.21 Score=51.56 Aligned_cols=58 Identities=16% Similarity=0.007 Sum_probs=54.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 614 l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+.+.++.+.|.+.|++|+++.|.....|+.+|.---+.|+++.|.+.|++.++++|..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4567889999999999999999999999999999999999999999999999999876
No 311
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.83 E-value=8 Score=42.85 Aligned_cols=82 Identities=13% Similarity=-0.016 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCC------------HHHHHHHHHHHHhcCCChHH-HHHHHHHHHhcCCHHHHH
Q 003249 466 EDLDKATALDPTLSYPYMYRASSLMTKQN------------VEAALAEINRILGFKLALEC-LELRFCFFLALEDYQAAL 532 (836)
Q Consensus 466 ~d~~kAi~ldP~~~~ay~~rg~~l~~~g~------------~~eAi~~~~kai~l~P~~~~-~~~rg~~~~~lg~~~~Ai 532 (836)
..|++.+.-+|.+..+|..+....-..-. .+.-++.|++||+-+|+... +...-.+..+..+-++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 44777777777777777776654433322 45667788888888886433 333334556667788888
Q ss_pred HHHHHHHhhCCCchh
Q 003249 533 CDVQAILTLSPDYRM 547 (836)
Q Consensus 533 ~d~~~al~l~P~~~~ 547 (836)
+-+++++..+|++..
T Consensus 86 ~~we~~l~~~~~~~~ 100 (321)
T PF08424_consen 86 KKWEELLFKNPGSPE 100 (321)
T ss_pred HHHHHHHHHCCCChH
Confidence 888888888887654
No 312
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=92.82 E-value=0.3 Score=49.84 Aligned_cols=93 Identities=19% Similarity=0.176 Sum_probs=74.9
Q ss_pred ccEEEEeCCeEEehhHHHHhhcCH--HHHHhhcCC--C-CcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHHH
Q 003249 182 RNVVFRIHEEKIECDRQKFAALSA--PFSAMLNGS--F-MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLL 256 (836)
Q Consensus 182 ~DV~~~v~~~~~~aHr~vLaa~S~--yF~amf~~~--~-~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v~ 256 (836)
+=|.+.+||+.|-.-+--|.-+-| -.-+||.+. | .|+.+.-+-|. -+|.-|+.+++|+..|.+...+.-++.
T Consensus 9 ~~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID---Rsp~yFepIlNyLr~Gq~~~~s~i~~l 85 (302)
T KOG1665|consen 9 SMVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID---RSPKYFEPILNYLRDGQIPSLSDIDCL 85 (302)
T ss_pred hhheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc---cCchhhHHHHHHHhcCceeecCCccHH
Confidence 347888999988777666666543 667899863 2 45555666666 899999999999999999977777999
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 003249 257 EILIFANKFCCERLKDACDRK 277 (836)
Q Consensus 257 ~lL~aA~~~c~~~L~~~c~~~ 277 (836)
.||..|++|.+-.|+.+++..
T Consensus 86 gvLeeArff~i~sL~~hle~~ 106 (302)
T KOG1665|consen 86 GVLEEARFFQILSLKDHLEDS 106 (302)
T ss_pred HHHHHhhHHhhHhHHhHHhhh
Confidence 999999999999999988763
No 313
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=92.80 E-value=0.33 Score=54.21 Aligned_cols=85 Identities=21% Similarity=0.208 Sum_probs=67.7
Q ss_pred EEEEeCCeEEehhHHHHhhcC--HHHHHhhcCCCCcCCcce--eEecCCCCCHHHHHHHHHhhccCcCCCCCHHHHHHHH
Q 003249 184 VVFRIHEEKIECDRQKFAALS--APFSAMLNGSFMESLCED--IDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (836)
Q Consensus 184 V~~~v~~~~~~aHr~vLaa~S--~yF~amf~~~~~Es~~~~--I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v~~lL 259 (836)
|.|-|||+.|.-.+.-|+... .+|-++|++.+.-...+. |-|. =.|+.|..+|+|+.||.++ ++......+|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID---RDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID---RDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec---CCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 789999999999999997766 699999998875444433 5555 7899999999999999999 7655444444
Q ss_pred H-HHHHHhHHHHHH
Q 003249 260 I-FANKFCCERLKD 272 (836)
Q Consensus 260 ~-aA~~~c~~~L~~ 272 (836)
. =|.+|.++.|.+
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 4 788888877776
No 314
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=92.46 E-value=3 Score=45.53 Aligned_cols=190 Identities=16% Similarity=0.105 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l 541 (836)
+|||..=.-...|-|..+++.--.++++.+..+...=+..=...|-+.-++..+.+|+.+ ++++.-.++|+..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI-------~eg~all~rA~~~ 285 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALI-------DEGLALLDRALAS 285 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHH-------HHHHHHHHHHHHc
Confidence 777777777788899999999888888876554433222111122222122334445544 4556666666666
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003249 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (836)
Q Consensus 542 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~ 621 (836)
.- -..|..+.+.. .++.. -+..+-+|-..+..+|.+|..--.++..-.|++.++.+.-=++
T Consensus 286 ~~-pGPYqlqAAIa----------------a~HA~--a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 286 RR-PGPYQLQAAIA----------------ALHAR--ARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred CC-CChHHHHHHHH----------------HHHHh--hcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHH
Confidence 54 11232222211 11111 1122233344677778888777777778889999998888888
Q ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHH
Q 003249 622 AAMRSLQLARQH--AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLK 677 (836)
Q Consensus 622 eAl~~~~~Al~l--~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~ 677 (836)
.++...+....- =..++-.+-.+|-.+.++|+.+||-+.|++||.+.++. +..|.+
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 899888877765 45667788889999999999999999999999998776 444443
No 315
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=2 Score=50.08 Aligned_cols=128 Identities=13% Similarity=-0.020 Sum_probs=93.8
Q ss_pred HHHHHhcCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhccc
Q 003249 593 IYQMLESDAPKGVLYFR--QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEE-SIQMKR 669 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~--~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~-Ai~l~p 669 (836)
+...+.++|.+...... +++.+..++....|.-.+..++..+|.++.+..++|.++...|....++..+.. +..+.|
T Consensus 54 ~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~ 133 (620)
T COG3914 54 LLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSP 133 (620)
T ss_pred HHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc
Confidence 33344455666655333 588888899998999999999999999999999999999888888888877766 777777
Q ss_pred chHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhh
Q 003249 670 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQG 749 (836)
Q Consensus 670 ~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~ 749 (836)
++..+-.. ....|. +|.....+|+..+|.....++.++.|...+.+
T Consensus 134 ~~~~~~~~---------------------------------~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 134 DNAEFLGH---------------------------------LIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred chHHHHhh---------------------------------HHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 66211100 012233 78888889999999999999999887766555
Q ss_pred HHHHH
Q 003249 750 LARVH 754 (836)
Q Consensus 750 la~~~ 754 (836)
.+.+-
T Consensus 180 ~~~~~ 184 (620)
T COG3914 180 GALMT 184 (620)
T ss_pred hHHHH
Confidence 55543
No 316
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.41 E-value=7.9 Score=44.35 Aligned_cols=143 Identities=15% Similarity=0.042 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch-----hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHh
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-----YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER 455 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~-----~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r 455 (836)
..+..++.+|.-...-+-|+.|+..|..|+++.+. ....++|.+|.+.|+-+.-++..+. +.|.+...+..+
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq 441 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQ 441 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHH
Confidence 45567778999888999999999999999987433 3456888899998875444433322 233222222111
Q ss_pred hhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---h---H-HHHHHHHHHHhcCCH
Q 003249 456 SLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA---L---E-CLELRFCFFLALEDY 528 (836)
Q Consensus 456 ~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~---~---~-~~~~rg~~~~~lg~~ 528 (836)
.++ +..++-.|.-.+.++++.||-....+.++..-. . . .+..+|.+...+|+.
T Consensus 442 ---------------~l~-----a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~ 501 (629)
T KOG2300|consen 442 ---------------RLE-----ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNT 501 (629)
T ss_pred ---------------HHH-----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 111 356788899999999999999999999987631 1 1 134468889999999
Q ss_pred HHHHHHHHHHHhhCCCch
Q 003249 529 QAALCDVQAILTLSPDYR 546 (836)
Q Consensus 529 ~~Ai~d~~~al~l~P~~~ 546 (836)
.++..-.+-++++...-+
T Consensus 502 ~es~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 502 VESRNMVRPAMQLAKKIP 519 (629)
T ss_pred HHHHhccchHHHHHhcCC
Confidence 999998888888765443
No 317
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=92.40 E-value=0.51 Score=38.86 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=43.5
Q ss_pred EEEEe-CCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhcc
Q 003249 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVT 244 (836)
Q Consensus 184 V~~~v-~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Yt 244 (836)
|+|+- +|+.|.+.+.+.- .|..++.||.+...+.. .|.|+ +|+..+|+.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~Ipl~--~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PIPLP--NVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EEEET--TS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--ccccC--ccCHHHHHHHHHHHHh
Confidence 45555 7889999998765 79999999986443333 79999 6999999999999863
No 318
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.32 E-value=0.53 Score=37.57 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 003249 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY 643 (836)
Q Consensus 608 ~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~ 643 (836)
|.+++.+.++|+|++|.+..+.++++.|++..+...
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 344444455555555555555555555555544433
No 319
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=9 Score=44.54 Aligned_cols=245 Identities=15% Similarity=0.069 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-----LECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-----~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
+...+.+.+..+.-|+++--..+.+..+.-.|+.+.|+..++..++ +. .-+++.+|+++.-+.+|..|-.++.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4445556777888999999999999999999999999999999998 42 2356779999999999999999998
Q ss_pred HHHhhCCCchh-hhhhHHHHHHH--HHHHHHhhhHhHHHHHHhh----hhccCc---ccccchHHHHHHHHhcCC---CC
Q 003249 537 AILTLSPDYRM-FEGRVAASQLH--MLVREHIDNWTIADCWLQL----YDRWSS---VDDIGSLSVIYQMLESDA---PK 603 (836)
Q Consensus 537 ~al~l~P~~~~-~~~~~~~~~~~--~~l~~~~~~~~~a~~~~~~----~~~~~~---~~~~~aL~~~~~al~~~P---~~ 603 (836)
....++-=..- |....++..+. +......+..+.+..+.+. .-..+. ++.+ .+--..+.....| ..
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f-~~RKverf~~~~~~~~~~ 406 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF-IVRKVERFVKRGPLNASI 406 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH-HHHHHHHHhccccccccc
Confidence 88877642211 21222111110 0001111111222111110 000000 0000 1111122222222 22
Q ss_pred HHHH--HHHHHHHHHc--CCHHHHH--HHHHHHHHcCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHH
Q 003249 604 GVLY--FRQSLLLLRL--NCPEAAM--RSLQLARQHAASDHER--LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF 675 (836)
Q Consensus 604 ~~~~--~~~gl~l~~l--~~~~eAl--~~~~~Al~l~P~~~ea--l~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~ 675 (836)
+.+. +......... ...++.+ +.-..--+++..|-+. +..+|.++..+|+-+.|-.+|...++-.
T Consensus 407 ~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e------- 479 (546)
T KOG3783|consen 407 LLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKE------- 479 (546)
T ss_pred cccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------
Confidence 2221 2222222211 1111222 1111112232233333 4568999999998888888887776420
Q ss_pred HHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCC
Q 003249 676 LKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ-LDLAADCYSNALKIR 742 (836)
Q Consensus 676 ~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~-~deAi~~y~kAL~l~ 742 (836)
.....+..-.|-|++.+|..|.++|. +.+|.+...+|=+-.
T Consensus 480 --------------------------~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 480 --------------------------SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred --------------------------HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 00000111136789999999999998 999999999997764
No 320
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.24 E-value=0.5 Score=42.34 Aligned_cols=59 Identities=24% Similarity=0.129 Sum_probs=46.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 613 LLLRLNCPEAAMRSLQLARQH----AAS-----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 613 ~l~~l~~~~eAl~~~~~Al~l----~P~-----~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.-.+.+++.+|++.+.+.... ... ...++.++|.+....|++++|+..+++||++-+..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999998777776643 222 25788999999999999999999999999886543
No 321
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.86 E-value=1.9 Score=39.80 Aligned_cols=101 Identities=12% Similarity=0.029 Sum_probs=54.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCch---HHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHH
Q 003249 422 ARLGYIKGHKLWAYEKLNSVISSVTPLG---WMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAA 498 (836)
Q Consensus 422 a~~~~~~G~~~~A~~~~~~ai~~~~~~~---~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eA 498 (836)
|.-++.+|++-+|++.+++.|..+++.. ..+..+|.. .+..|...+-.+...-+-+ .|
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~i--------f~~lA~~ten~d~k~~yLl-----------~s 63 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTI--------FYKLAKKTENPDVKFRYLL-----------GS 63 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHH--------HHHHHHhccCchHHHHHHH-----------Hh
Confidence 4556677777777777777777766443 233334433 1334444432222222222 24
Q ss_pred HHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003249 499 LAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTL 541 (836)
Q Consensus 499 i~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l 541 (836)
++.|.++..+.|+. ..++.+|.-+.....|++++.-.+++|.+
T Consensus 64 ve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 64 VECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 66777777777753 34445555544455566666666666553
No 322
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.70 E-value=0.45 Score=54.89 Aligned_cols=89 Identities=18% Similarity=0.075 Sum_probs=79.3
Q ss_pred CChhhHHHHHHHHHhcCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 459 CEGDKRWEDLDKATALDPTLSY-PYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~~-ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
|..-.|++++..|+-+.|.-.. +..++++++..-|-..+|-..+++++.++-+ |-.++..|..|..+.+.++|++.|+
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 4457899999999999997654 5789999999999999999999999999965 4556678999999999999999999
Q ss_pred HHHhhCCCchh
Q 003249 537 AILTLSPDYRM 547 (836)
Q Consensus 537 ~al~l~P~~~~ 547 (836)
+|+.++|++..
T Consensus 701 ~a~~~~~~~~~ 711 (886)
T KOG4507|consen 701 QALKLTTKCPE 711 (886)
T ss_pred HHHhcCCCChh
Confidence 99999999965
No 323
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.65 E-value=0.27 Score=56.59 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=82.8
Q ss_pred HHHHHcCCH---HHHHHHHHHHHHcCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhcccc
Q 003249 612 LLLLRLNCP---EAAMRSLQLARQHAASDHE--RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 686 (836)
Q Consensus 612 l~l~~l~~~---~eAl~~~~~Al~l~P~~~e--al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l 686 (836)
.++.+++++ ++-|..+-..+-..|.-|- .++.-|.-...+|+-..|+++...|+-+.|...
T Consensus 576 ~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~-------------- 641 (886)
T KOG4507|consen 576 ILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQ-------------- 641 (886)
T ss_pred HHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhh--------------
Confidence 345555543 4444444333333333332 234456666789999999999999997766431
Q ss_pred CCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHH
Q 003249 687 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAY 764 (836)
Q Consensus 687 ~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~ 764 (836)
-..+.|++++....|...+|-....++|.|+.. -.|+.+|+.++.+.+.+.|+
T Consensus 642 -------------------------~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 642 -------------------------DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred -------------------------cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 123566677777777777777777777776532 35666677777777777777
Q ss_pred HHHHHHHHhcCCCHHHHHH
Q 003249 765 EEMTKLIKKARNNASAYEK 783 (836)
Q Consensus 765 ~~~~kaie~~p~~a~Ay~~ 783 (836)
+.+.+|++++||+...-+.
T Consensus 697 ~~~~~a~~~~~~~~~~~~~ 715 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENS 715 (886)
T ss_pred HHHHHHHhcCCCChhhHHH
Confidence 7777777777777655443
No 324
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=91.33 E-value=3.4 Score=44.78 Aligned_cols=131 Identities=11% Similarity=0.039 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHh-cCCHHHHHHHHHHhHhccCCchHHHHHhhhcCCh
Q 003249 385 AFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYI-KGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (836)
Q Consensus 385 a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~-~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~ 461 (836)
+|.......-..+..++|...|.+|.+-++. ..|...|.+-+. .++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~------------------------------ 52 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDP------------------------------ 52 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-H------------------------------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCH------------------------------
Confidence 3444444444555578888888888754322 233444444222 2222
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE----CLELRFCFFLALEDYQAALCDVQA 537 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~----~~~~rg~~~~~lg~~~~Ai~d~~~ 537 (836)
+.|...|+.+++.-|.+...|..-..-+...|+.+.|-..|.+++..-|... .|......=...|+.+....-+++
T Consensus 53 ~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R 132 (280)
T PF05843_consen 53 KRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKR 132 (280)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3355567888888888888888888888999999999999999999877643 233334445567999999999999
Q ss_pred HHhhCCCc
Q 003249 538 ILTLSPDY 545 (836)
Q Consensus 538 al~l~P~~ 545 (836)
+.++-|+.
T Consensus 133 ~~~~~~~~ 140 (280)
T PF05843_consen 133 AEELFPED 140 (280)
T ss_dssp HHHHTTTS
T ss_pred HHHHhhhh
Confidence 99999885
No 325
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.29 E-value=4.1 Score=40.64 Aligned_cols=155 Identities=12% Similarity=0.056 Sum_probs=105.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcccch---HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHH
Q 003249 644 EGWILYDTSHCEEGLRKAEESIQMKRSF---EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGS 720 (836)
Q Consensus 644 ~G~il~~~G~~eeAl~~~~~Ai~l~p~~---~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~ 720 (836)
-|+-+.+.++-..+=+.|..||++-... +++ ---..|.++|. ... ...+....|.
T Consensus 45 ~gy~yw~~s~as~sgd~flaAL~lA~~~k~d~Al-aaf~~lektg~-------------------g~Y--pvLA~mr~at 102 (221)
T COG4649 45 VGYTYWQTSRASKSGDAFLAALKLAQENKTDDAL-AAFTDLEKTGY-------------------GSY--PVLARMRAAT 102 (221)
T ss_pred eeeehhcccccccchHHHHHHHHHHHcCCchHHH-HHHHHHHhcCC-------------------Ccc--hHHHHHHHHH
Confidence 4667788888888888888888764332 110 00011222220 011 1457788899
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCch------hHHhhHHHHHHhcCCHHHHHHHHHHHH-HhcCCCHHHHHHHH----HccC
Q 003249 721 VYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLI-KKARNNASAYEKRS----EYCD 789 (836)
Q Consensus 721 ~y~~~g~~deAi~~y~kAL~l~~~------~A~~~la~~~~~~g~~~~A~~~~~kai-e~~p~~a~Ay~~r~----~~~~ 789 (836)
+..+.|+-.+|+..|..+-.-.+. .|...-|.++.-.|.|+.--...+..- +.+|-..+|-+.++ +-||
T Consensus 103 ~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd 182 (221)
T COG4649 103 LLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD 182 (221)
T ss_pred HHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc
Confidence 999999999999999998775432 344444556677788876554444322 56677777776663 4599
Q ss_pred HHHHHHHHHHhHhcCCCCcccchhhHHHHHHH
Q 003249 790 RELTRADLEMVTQLDPLRVYPYRYRAAGLIVF 821 (836)
Q Consensus 790 ~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~ 821 (836)
+.+|.++|.+-.. |.+-+..-++||.++|.-
T Consensus 183 ~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 183 FAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred hHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 9999999999777 888899999999988753
No 326
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.22 E-value=0.88 Score=48.51 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003249 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI 647 (836)
Q Consensus 590 L~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~i 647 (836)
+.+..+.+.++|.++.-+.-+|++|.++|++.-|+++++..+++-|+++.+-.-++.+
T Consensus 201 l~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 201 LRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4556666666777776666777777777777777777777777777766665544443
No 327
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.96 E-value=0.31 Score=50.36 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=26.6
Q ss_pred hcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 003249 724 DCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 777 (836)
Q Consensus 724 ~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~ 777 (836)
+.|+.+.|.+.|++||++-|. .-++.+|.-..+-|+++.|.+-|++.++++|.+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 444555555555555555443 234444445555555555555555555555443
No 328
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.80 E-value=10 Score=42.67 Aligned_cols=76 Identities=18% Similarity=0.131 Sum_probs=56.6
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---------hc-----CCC-------hHHHHHH---------HH
Q 003249 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL---------GF-----KLA-------LECLELR---------FC 520 (836)
Q Consensus 471 Ai~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai---------~l-----~P~-------~~~~~~r---------g~ 520 (836)
.+..+|-+.+++..++.++..+|+.+.|.+.+++|| .+ ++. ..-..|| ..
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 356688888888888888888888888888888886 23 221 0111222 34
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCC-ch
Q 003249 521 FFLALEDYQAALCDVQAILTLSPD-YR 546 (836)
Q Consensus 521 ~~~~lg~~~~Ai~d~~~al~l~P~-~~ 546 (836)
.+.+.|-+..|++..+-.+.+||+ ++
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence 567889999999999999999999 43
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.55 E-value=5.6 Score=46.07 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=84.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHH
Q 003249 617 LNCPEAAMRSLQLARQHAASDHER-LVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 695 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~~~ea-l~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i 695 (836)
.++++++++..+. -++-|.-++- ......-|.++|..+.|+. +-.+....|..|..+++
T Consensus 274 ~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~-------~~~D~~~rFeLAl~lg~------------ 333 (443)
T PF04053_consen 274 RGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQ-------FVTDPDHRFELALQLGN------------ 333 (443)
T ss_dssp TT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHH-------HSS-HHHHHHHHHHCT-------------
T ss_pred cCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHh-------hcCChHHHhHHHHhcCC------------
Confidence 3566766666531 2233333333 4455566678888888865 22233345555554443
Q ss_pred HHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 003249 696 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (836)
Q Consensus 696 ~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p 775 (836)
++.|.++... +....-|..||.+...+|+++-|.+||.++=.. .++..+|.-.|+. +.+..+-+.-+..-
T Consensus 334 --L~~A~~~a~~-~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~------~~L~lLy~~~g~~-~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 334 --LDIALEIAKE-LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF------SGLLLLYSSTGDR-EKLSKLAKIAEERG 403 (443)
T ss_dssp --HHHHHHHCCC-CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H------HHHHHHHHHCT-H-HHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHh-cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc------cccHHHHHHhCCH-HHHHHHHHHHHHcc
Confidence 3333333222 223578999999999999999999999988544 4567788888885 44444444444444
Q ss_pred CCHHHHHHHHHccCHHHHHHHHHHh
Q 003249 776 NNASAYEKRSEYCDRELTRADLEMV 800 (836)
Q Consensus 776 ~~a~Ay~~r~~~~~~~~A~~D~~~A 800 (836)
+.-.|+..---+||.++-+.-+.++
T Consensus 404 ~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4445555545557777766655543
No 330
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.36 E-value=0.3 Score=36.13 Aligned_cols=31 Identities=13% Similarity=0.272 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 003249 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (836)
Q Consensus 639 eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p 669 (836)
+.|..+|.+-...++|++|+.+|+++++|+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999998853
No 331
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=90.32 E-value=0.38 Score=52.30 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=65.7
Q ss_pred eEEehhHHHHhhcCHHHHHhhcCCCCc-CCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHHhHHH
Q 003249 191 EKIECDRQKFAALSAPFSAMLNGSFME-SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEILIFANKFCCER 269 (836)
Q Consensus 191 ~~~~aHr~vLaa~S~yF~amf~~~~~E-s~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v~~lL~aA~~~c~~~ 269 (836)
+.|.|.+-.|-..=.||+..+.....+ +..++|+|+- .-+..+|.-|++|+....-. ++++||..||.-|+++..+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisV-hCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISV-HCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEE-ecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 579999999999999999999652211 2234566653 36889999999999987666 99999999999999966666
Q ss_pred HHHHHHHH
Q 003249 270 LKDACDRK 277 (836)
Q Consensus 270 L~~~c~~~ 277 (836)
|...|=..
T Consensus 92 Lve~cl~y 99 (317)
T PF11822_consen 92 LVEECLQY 99 (317)
T ss_pred HHHHHHHH
Confidence 66655443
No 332
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.69 E-value=1.8 Score=37.34 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW---ILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~---il~~~G~~eeAl~~~~~Ai~l 667 (836)
-+..+|+=+...+..++|+...+++++..++.++.+..+|. ++.+.|+|.+.++..-+=+.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999998877776 578999999999876665554
No 333
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.67 E-value=2.7 Score=53.21 Aligned_cols=177 Identities=13% Similarity=0.130 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 003249 481 PYMYRASSLMTKQNVEAALAEINRILGF--------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (836)
Q Consensus 481 ay~~rg~~l~~~g~~~eAi~~~~kai~l--------~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~ 551 (836)
-..-.|..-..+|.+.+|-+ ..+++.+ .|. ..+|..++.++..+||+++|+..-++|.-+.-.
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR------- 1005 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISER------- 1005 (1236)
T ss_pred hhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeech-------
Confidence 34456777777888888888 5555543 444 466777889999999999999876666554321
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003249 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (836)
Q Consensus 552 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~-P~~~~~~~~~gl~l~~l~~~~eAl~~~~~A 630 (836)
.+..+ |+....|-++++.....+....|+..+.++
T Consensus 1006 --------------------------------------------~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 1006 --------------------------------------------VLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred --------------------------------------------hccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHH
Confidence 12222 444555566666666666666677777776
Q ss_pred HH--------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHh
Q 003249 631 RQ--------HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (836)
Q Consensus 631 l~--------l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al 702 (836)
.. ..|.-+-.-.+++.++..+++++.|+...+.|.+++-.. ..|
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v--------------~g~-------------- 1093 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV--------------LGP-------------- 1093 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh--------------cCc--------------
Confidence 64 467777778899999999999999999999998743211 111
Q ss_pred cCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 703 KCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 703 ~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+.+..+..+..++.++...+.+..|+..++.+..|
T Consensus 1094 ----~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 ----KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred ----cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 12223455666677777777777777777777665
No 334
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=89.15 E-value=7.8 Score=39.02 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcccchHHHHH-HHHHhhccccCCCChhHHHHHHHHHhcCCccccchHH
Q 003249 636 SDHERLVYEGWILY-DTSHCEEGLRKAEESIQMKRSFEAFFL-KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 713 (836)
Q Consensus 636 ~~~eal~~~G~il~-~~G~~eeAl~~~~~Ai~l~p~~~a~~~-~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~ 713 (836)
..|++...+|.-+- -+.+|++|...|..-..-+......|- -.+-+.-.+-+..+...++.-++.|... +.++
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~-----n~~~ 106 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA-----NIPQ 106 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-----CCHH
Confidence 44556555554442 335566666666655554444333332 3344444555666777778888877762 2357
Q ss_pred HHHHHHHHHHhcC-------CHHHHHHHHHHHHcCCchhHHhhHHHHHHhc
Q 003249 714 ALNNLGSVYVDCG-------QLDLAADCYSNALKIRHTRAHQGLARVHFLK 757 (836)
Q Consensus 714 a~~nlG~~y~~~g-------~~deAi~~y~kAL~l~~~~A~~~la~~~~~~ 757 (836)
+-.++|.+..+-. +..+|.+.+++|-++++..|-++|...|..-
T Consensus 107 aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 107 ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGG 157 (248)
T ss_pred HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhcc
Confidence 8889998877532 3789999999999999998888888776554
No 335
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.10 E-value=13 Score=39.93 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-------C--hHHHHHHHHHHHhcCCHHHHH
Q 003249 484 YRASSLMTKQNVEAALAEINRILGFKL-------A--LECLELRFCFFLALEDYQAAL 532 (836)
Q Consensus 484 ~rg~~l~~~g~~~eAi~~~~kai~l~P-------~--~~~~~~rg~~~~~lg~~~~Ai 532 (836)
..++-....+++++||..|.+++.-.. + ..+..+++.+|..+|++..--
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 345556678999999999999997632 1 133556888999999887543
No 336
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.70 E-value=0.45 Score=35.20 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+.|.-||.+-...++|++|+++|.+||+|
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778899999999999999999999887
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.55 E-value=7.2 Score=41.46 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHH--------hhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAH--------QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 785 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~--------~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~ 785 (836)
.|.---..|..+.+-..--..|.+||.++.+-.| -.=|..+.+.|++++|-.+|-.|++-..... .-|.
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG---spRR 269 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG---SPRR 269 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC---Ccch
Confidence 4444445678888888888899999998643222 2234478889999999999988886421111 1111
Q ss_pred HccCHHHHHHHHHHhHhcCC---CCcccchhhHHHHH
Q 003249 786 EYCDRELTRADLEMVTQLDP---LRVYPYRYRAAGLI 819 (836)
Q Consensus 786 ~~~~~~~A~~D~~~Ai~l~P---~~~~~y~~r~~~~~ 819 (836)
..|-.=..++..-+--.+|| ..++||.+--.++.
T Consensus 270 ttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlA 306 (440)
T KOG1464|consen 270 TTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILA 306 (440)
T ss_pred hHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHH
Confidence 11111122333333445666 45788888776654
No 338
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=88.26 E-value=0.33 Score=51.55 Aligned_cols=88 Identities=9% Similarity=0.157 Sum_probs=66.9
Q ss_pred cEEEEeCCeEEehhHHHHhhcC-HHHHHhhcCCCC---cCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHHHHH
Q 003249 183 NVVFRIHEEKIECDRQKFAALS-APFSAMLNGSFM---ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEI 258 (836)
Q Consensus 183 DV~~~v~~~~~~aHr~vLaa~S-~yF~amf~~~~~---Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v~~l 258 (836)
-++..|++..|-..+.+|.+.- .-.-.||.+++. -....+.++-| ||+..+|+++|+|--||.+.--+.-.|-+|
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAd-Gi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVAD-GMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhc-chhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 4788888888888888886642 233578887652 33447788887 999999999999999999983344568889
Q ss_pred HHHHHHHhHHHHH
Q 003249 259 LIFANKFCCERLK 271 (836)
Q Consensus 259 L~aA~~~c~~~L~ 271 (836)
-.+.|.+|+.|=-
T Consensus 176 rEACDYLlipF~a 188 (438)
T KOG3840|consen 176 REACDYLLVPFNA 188 (438)
T ss_pred HhhcceEEeeccc
Confidence 9999988876633
No 339
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.10 E-value=5.6 Score=44.71 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 609 ~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai 665 (836)
.+..+|+++++++.|+...-+.|.+||...--+...+.++..+.+|.||-..+--|.
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888888888888888888888888888888866554443
No 340
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=87.90 E-value=0.34 Score=53.05 Aligned_cols=91 Identities=11% Similarity=0.050 Sum_probs=67.1
Q ss_pred cccEEEEe-CCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHHHHHH
Q 003249 181 LRNVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEIL 259 (836)
Q Consensus 181 ~~DV~~~v-~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v~~lL 259 (836)
..|++|.+ +|+.|.|||..|+++|.+|..-+..-+ ....+|+-. .+-+.+|..++.|.|-..=. +-++.-.+|+
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~--~~~heI~~~--~v~~~~f~~flk~lyl~~na-~~~~qynall 223 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFY--VQGHEIEAH--RVILSAFSPFLKQLYLNTNA-EWKDQYNALL 223 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhc--cccCchhhh--hhhHhhhhHHHHHHHHhhhh-hhhhHHHHHH
Confidence 35899987 788999999999999988754443222 223445333 28899999999999987433 5566678899
Q ss_pred HHHHHHhHHHHHHHHHH
Q 003249 260 IFANKFCCERLKDACDR 276 (836)
Q Consensus 260 ~aA~~~c~~~L~~~c~~ 276 (836)
....+|..+.|....+.
T Consensus 224 si~~kF~~e~l~~~~~k 240 (516)
T KOG0511|consen 224 SIEVKFSKEKLSLEISK 240 (516)
T ss_pred hhhhhccHHHhHHHHhh
Confidence 99999888877766554
No 341
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.74 E-value=1.2 Score=47.45 Aligned_cols=65 Identities=22% Similarity=0.218 Sum_probs=54.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 483 ~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
.++-.++...++++.|...-.+.+.++|+ +..+.-||.+|.++|.+..|+.|++..++.-|+...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 34556788889999999999999999996 555667899999999999999999998998888753
No 342
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=86.52 E-value=58 Score=41.31 Aligned_cols=96 Identities=15% Similarity=0.065 Sum_probs=64.9
Q ss_pred hHHHHHhhhcCChhhHHHHHHHHHhcCCCCh---HHHHHHHHHHHhc-------CCHHHHHHHHHHHHhcCCChHHHHHH
Q 003249 449 GWMYQERSLYCEGDKRWEDLDKATALDPTLS---YPYMYRASSLMTK-------QNVEAALAEINRILGFKLALECLELR 518 (836)
Q Consensus 449 ~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~---~ay~~rg~~l~~~-------g~~~eAi~~~~kai~l~P~~~~~~~r 518 (836)
++++..-.+| +.|+.-|.+.-.--|.-. ++.+..|.++.++ ..+++|+..|++.-.--..|-.|...
T Consensus 482 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (932)
T PRK13184 482 PDAFLAEKLY---DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGK 558 (932)
T ss_pred cHHHHhhHHH---HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhH
Confidence 3444444444 555555555555555443 3445556655443 35888999888875422234456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 519 FCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 519 g~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
+.+|..+|+|++-+++|.-|++.-|+++.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 89999999999999999999999999975
No 343
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.35 E-value=9.1 Score=39.24 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHH
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD----HERLVYEGWILYDTSHCEEG 657 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~----~eal~~~G~il~~~G~~eeA 657 (836)
+.++..+.+|.-|. ..+.++|+..+.+++++.+.+ ++.+..++.+++++|++++|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 46777777777776 567899999999999987665 99999999999999999998
No 344
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.10 E-value=0.95 Score=30.25 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 639 ERLVYEGWILYDTSHCEEGLRKAE 662 (836)
Q Consensus 639 eal~~~G~il~~~G~~eeAl~~~~ 662 (836)
.+++.+|.++..+|+.++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 466778888888888888877654
No 345
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=84.55 E-value=83 Score=36.22 Aligned_cols=232 Identities=15% Similarity=0.091 Sum_probs=125.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH--HHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHH
Q 003249 520 CFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA--SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML 597 (836)
Q Consensus 520 ~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~--~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al 597 (836)
....+.++...|-+...-...++|+.. ..+++.. ..+..-+.+.-.++.+-..+..+++..... |++.=..
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ldp~~s-vs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~-DiDrqQL----- 378 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKILDPRIS-VSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY-DIDRQQL----- 378 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcch-hhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh-cccHHHH-----
Confidence 345678999999999999999999874 2222211 011111121222222222222221111111 1110000
Q ss_pred hcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHH
Q 003249 598 ESDAPKGVLYFRQSLLLLRLNC-PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 676 (836)
Q Consensus 598 ~~~P~~~~~~~~~gl~l~~l~~-~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~ 676 (836)
+-...+-+.-+.+.|. -++|++.++.+++..|.|-+..+..-.. .+ ..|.+|++.+ ..+-.+.
T Consensus 379 ------vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f-vK--------q~Y~qaLs~~-~~~rLlk 442 (549)
T PF07079_consen 379 ------VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF-VK--------QAYKQALSMH-AIPRLLK 442 (549)
T ss_pred ------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH-HH--------HHHHHHHhhh-hHHHHHH
Confidence 1111222334556665 8899999999999999998654332221 11 2345555422 1111222
Q ss_pred HHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHH--HHhcCCHHHHHHHHHHHHcCCc-hhHHhhHHHH
Q 003249 677 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSV--YVDCGQLDLAADCYSNALKIRH-TRAHQGLARV 753 (836)
Q Consensus 677 ~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~--y~~~g~~deAi~~y~kAL~l~~-~~A~~~la~~ 753 (836)
......+.|+.|. .++..+.-|-++.+ ++.+|+|.++.-.-.=-.++.| +.++.-+|.+
T Consensus 443 Le~fi~e~gl~~i------------------~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~ 504 (549)
T PF07079_consen 443 LEDFITEVGLTPI------------------TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLC 504 (549)
T ss_pred HHHHHHhcCCCcc------------------cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 2333334444333 33334444445443 6778999987766555567777 4799999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHccCHHHHHHHHHHhH
Q 003249 754 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVT 801 (836)
Q Consensus 754 ~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~~~~~~A~~D~~~Ai 801 (836)
.....+|++||+.+.+ + |-|-..+... .++|+.-|.|-+
T Consensus 505 l~e~k~Y~eA~~~l~~---L-P~n~~~~dsk-----vqKAl~lCqKh~ 543 (549)
T PF07079_consen 505 LMENKRYQEAWEYLQK---L-PPNERMRDSK-----VQKALALCQKHL 543 (549)
T ss_pred HHHHhhHHHHHHHHHh---C-CCchhhHHHH-----HHHHHHHHHHhh
Confidence 9999999999976543 3 4455554432 256666666644
No 346
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=84.30 E-value=6.4 Score=50.10 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=49.4
Q ss_pred ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC----------chhHHhhHHHHHHhcCCHHHHHHHHHHHH
Q 003249 706 SDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR----------HTRAHQGLARVHFLKNNKTTAYEEMTKLI 771 (836)
Q Consensus 706 ~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~----------~~~A~~~la~~~~~~g~~~~A~~~~~kai 771 (836)
++.|.-....+|++.++...++++.|+.+.+.|+.+. ...-+.-+|+++.-.|++..|+...+...
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 3444445567899999999999999999999999863 12345667777777787777776666655
No 347
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.08 E-value=5.2 Score=40.35 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 640 RLVYEGWILYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 640 al~~~G~il~~~G~~eeAl~~~~~Ai 665 (836)
++..+|.-|.+.|++++|++.|.++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~ 63 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRAR 63 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 34455555555555555555555544
No 348
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.92 E-value=27 Score=39.51 Aligned_cols=94 Identities=12% Similarity=0.129 Sum_probs=78.2
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----HHHHHHHHH
Q 003249 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNC--PEAAMRSLQLARQHAASDHERLVYEGWILYDTSH----CEEGLRKAE 662 (836)
Q Consensus 589 aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~--~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~----~eeAl~~~~ 662 (836)
.|..+..+|..+|+.-.+|+.|--++.+... ++.=++..+++++.+|.+-.+|.+|-+|...... ..+=++..+
T Consensus 94 eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt 173 (421)
T KOG0529|consen 94 ELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTT 173 (421)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHH
Confidence 4788899999999999999999999987665 5788999999999999999999999998865444 356677888
Q ss_pred HHHhcccch-HHHHHHHHHhh
Q 003249 663 ESIQMKRSF-EAFFLKAYALA 682 (836)
Q Consensus 663 ~Ai~l~p~~-~a~~~~a~aL~ 682 (836)
++|.-++++ .|+.++-..|.
T Consensus 174 ~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 174 KLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHhccchhhhHHHHHHHHHH
Confidence 888888664 78887776665
No 349
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.69 E-value=6 Score=33.97 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
..+..++.-+-..|++++|+.+|++|+++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34566666777888999999999777764
No 350
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.36 E-value=2.5 Score=30.83 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH--HHHHHhcccc
Q 003249 638 HERLVYEGWILYDTSHCEEGLRK--AEESIQMKRS 670 (836)
Q Consensus 638 ~eal~~~G~il~~~G~~eeAl~~--~~~Ai~l~p~ 670 (836)
++.++..|..++.+|++++|+.. |.-+..++|.
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 35678889999999999999998 4466665543
No 351
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.72 E-value=57 Score=32.89 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-hHHH-HHH-HHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 490 MTKQNVEAALAEINRILGFKLA-LECL-ELR-FCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 490 ~~~g~~~eAi~~~~kai~l~P~-~~~~-~~r-g~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
.+.++.++|++.|...-+-+-. +..+ ..| |.+..+.|+-.+|+.+|+.+-.-.|--
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 4577888888888877665543 3332 233 677888899999999998877766543
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.67 E-value=7.5 Score=33.66 Aligned_cols=58 Identities=10% Similarity=0.049 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHH---HHHHhcCCHHHHHHHHHH
Q 003249 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELRF---CFFLALEDYQAALCDVQA 537 (836)
Q Consensus 480 ~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg---~~~~~lg~~~~Ai~d~~~ 537 (836)
....-+|+-++.+.+.++|+..++++++-.+++ +.+..+| .+|...|+|+++++.--+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888999999999999999999998874 4444455 568899999999875433
No 353
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=82.52 E-value=70 Score=33.81 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHH-hcCCHHHHHHHHHHHHhh
Q 003249 482 YMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFFL-ALEDYQAALCDVQAILTL 541 (836)
Q Consensus 482 y~~rg~~l~~~g~~~eAi~~~~kai~l~P~--~~~~~~rg~~~~-~lg~~~~Ai~d~~~al~l 541 (836)
+.+++.+..+.|+|++.+..+.++++.+|+ .+....+..+|. ..|..-.+.+-+....+-
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 567888999999999999999999999985 344555555553 235555555554444443
No 354
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.34 E-value=4.7 Score=45.88 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=36.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 491 TKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (836)
Q Consensus 491 ~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~a 538 (836)
..|+...|-.-...++.-.|. |.....++.++..+|+|++|.++..-+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~ 349 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDV 349 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhch
Confidence 467777777778888888886 555556788888999999888776543
No 355
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.31 E-value=14 Score=36.56 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=53.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH
Q 003249 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (836)
Q Consensus 611 gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~ 672 (836)
..+-.+.++.+++...+....-+.|+.++.-..-||++...|++.+|+..++...+-.|.++
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 33445667889999999999999999999999999999999999999999999877767663
No 356
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.25 E-value=6.7 Score=44.67 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=48.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai 665 (836)
.+.-+|...|+.+..-..++.+...+|.|+.|++++.-+=.+-..-..+..-+=.-++.+|++++|++..+-.+
T Consensus 311 ~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 311 QLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 34456677777777777777777788888888777666655444444455455556677777777766554444
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.94 E-value=1.6 Score=29.10 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYS 736 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~ 736 (836)
.++.++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356777777777777777777654
No 358
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=81.16 E-value=1.2 Score=48.88 Aligned_cols=64 Identities=13% Similarity=-0.009 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 608 ~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+.+.+.++.+.+..|+..-..+++.+++...+++.+|..+..+.++++|++++..+...+|++
T Consensus 279 ~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 279 RNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred cchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence 3355555666666666666666666666666667777777766667777777666666666665
No 359
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=81.03 E-value=1.4e+02 Score=36.21 Aligned_cols=89 Identities=12% Similarity=0.046 Sum_probs=54.6
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH--H-----HHHHHHHhhccccCCCChhHHHHHHH
Q 003249 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE--A-----FFLKAYALADSSQDSSCSSTVVSLLE 699 (836)
Q Consensus 627 ~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~--a-----~~~~a~aL~~~~l~~~~~~~~i~~l~ 699 (836)
++...+--|++++.+-.+|..+...|..++|++.|-+--. |... + -+++|..|+..-.-|
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--pkaAv~tCv~LnQW~~avelaq~~~l~----------- 907 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--PKAAVHTCVELNQWGEAVELAQRFQLP----------- 907 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC--cHHHHHHHHHHHHHHHHHHHHHhccch-----------
Confidence 3444556799999999999999999999999998854321 2211 0 133444444322111
Q ss_pred HHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 700 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 738 (836)
Q Consensus 700 ~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kA 738 (836)
+.+.....-+.-+...++.-+||+.+++|
T Consensus 908 ----------qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 908 ----------QVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred ----------hHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 11222233344456667888888888888
No 360
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.82 E-value=8.3 Score=38.86 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--c---hhHHhhHHHHHHhcCCHHHHHHHHHHHHHh
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIR--H---TRAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~--~---~~A~~~la~~~~~~g~~~~A~~~~~kaie~ 773 (836)
..++..+|.-|.+.|++++|+++|.++.+-- + .....++-++....|++.......+|+-..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998752 2 256788888999999999998888887744
No 361
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=80.51 E-value=61 Score=34.26 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 515 LELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 515 ~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
+..++.+..+.|+|++++....+++..+|+...
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~ 36 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTE 36 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCH
Confidence 456788999999999999999999999997643
No 362
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.42 E-value=6.7 Score=34.98 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=45.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC----h------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 488 SLMTKQNVEAALAEINRILGFKLA----L------ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 488 ~l~~~g~~~eAi~~~~kai~l~P~----~------~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
--...|+|.+|++.+.+....-.. . .++.++|.++...|++++|+..++.|+++-...
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 345789999999998888876441 1 345568889999999999999999999985443
No 363
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.02 E-value=14 Score=35.42 Aligned_cols=73 Identities=19% Similarity=0.150 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHcC-Cch---hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003249 713 QALNNLGSVYVDCG---QLDLAADCYSNALKI-RHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 785 (836)
Q Consensus 713 ~a~~nlG~~y~~~g---~~deAi~~y~kAL~l-~~~---~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~ 785 (836)
+..+|++-++.... +..+.|.+++.-++- .|. .-.+.||..+++.|+|+.++...+..++..|||.+|-.-+.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 56677777777654 567889999999872 233 35689999999999999999999999999999999976543
No 364
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.29 E-value=17 Score=37.86 Aligned_cols=66 Identities=20% Similarity=0.126 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 603 KGVLYFRQSLLLLRLNCP-------EAAMRSLQLARQHAA------SDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~-------~eAl~~~~~Al~l~P------~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
.+.++.+.|=++..+|+. ..|+..|.+|++... ++...++.+|.+.+++|++++|+..|.+.|.-.
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 356667777777777774 456666666665432 235678889999999999999999999999754
No 365
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.96 E-value=1.6e+02 Score=35.70 Aligned_cols=111 Identities=12% Similarity=-0.040 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC----C---c---------------------hhHHhhHHHHHHhcCCHHHHHH
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI----R---H---------------------TRAHQGLARVHFLKNNKTTAYE 765 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l----~---~---------------------~~A~~~la~~~~~~g~~~~A~~ 765 (836)
.|.==|.++...|..++|...+.+|++. . + -..+...+.....+|++..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 4445577777788888998888888763 1 0 0234667778888999988887
Q ss_pred HHHHHHHhc---CC------CHHHHHHHHH----ccCHHHHHHHHH--------HhHhcCCC---CcccchhhHHHHHHH
Q 003249 766 EMTKLIKKA---RN------NASAYEKRSE----YCDRELTRADLE--------MVTQLDPL---RVYPYRYRAAGLIVF 821 (836)
Q Consensus 766 ~~~kaie~~---p~------~a~Ay~~r~~----~~~~~~A~~D~~--------~Ai~l~P~---~~~~y~~r~~~~~~~ 821 (836)
..+.+.+.. |. .+..++-.|- .|+.+.|+.-|. .+.+..|. +..+-.|+..++...
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~ 462 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYE 462 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhh
Confidence 777766543 22 2444444442 389999999997 44444432 334555666666555
Q ss_pred hhh
Q 003249 822 LNL 824 (836)
Q Consensus 822 ~~~ 824 (836)
+..
T Consensus 463 ~~~ 465 (608)
T PF10345_consen 463 SSR 465 (608)
T ss_pred ccc
Confidence 443
No 366
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=78.79 E-value=5.5 Score=29.10 Aligned_cols=30 Identities=17% Similarity=0.010 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHhhCCC
Q 003249 515 LELRFCFFLALEDYQAALCD--VQAILTLSPD 544 (836)
Q Consensus 515 ~~~rg~~~~~lg~~~~Ai~d--~~~al~l~P~ 544 (836)
++..|..+..+|+|++|+.. |+-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44556666666666666666 3366656554
No 367
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.76 E-value=1.3e+02 Score=34.67 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=47.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 486 ASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 486 g~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
|.-++.+|+|.++.-.-.=..++.|++.++...|.+.....+|++|..++.. +-|+.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~ 525 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNE 525 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCch
Confidence 4457889999999988888888999999999999999999999999988764 44544
No 368
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.73 E-value=9.3 Score=36.67 Aligned_cols=68 Identities=22% Similarity=0.291 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 480 YPYMYRASSLMTKQ---NVEAALAEINRILG-FKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 480 ~ay~~rg~~l~~~g---~~~eAi~~~~kai~-l~P~--~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
...++++-++.... +..+-|..+...++ -.|. -++.|.++..+.++|+|+.|+...+..|+.+|++.+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 34556666665443 46778999999997 5554 378888999999999999999999999999999965
No 369
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.69 E-value=14 Score=42.65 Aligned_cols=83 Identities=4% Similarity=-0.031 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhccc
Q 003249 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSH-CEEGLRKAEESIQMKR 669 (836)
Q Consensus 591 ~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~-~eeAl~~~~~Ai~l~p 669 (836)
..|..++..-|++..+|.+=..--.+-+-+.+--..|.+++..+|++++.|+.-+.=.++-+. .+-|-+.|.++|+.+|
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396|consen 92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCC
Confidence 356677777788888887655544455557888888999999999999999888887777777 8888889999999998
Q ss_pred chHH
Q 003249 670 SFEA 673 (836)
Q Consensus 670 ~~~a 673 (836)
+.+.
T Consensus 172 dsp~ 175 (568)
T KOG2396|consen 172 DSPK 175 (568)
T ss_pred CChH
Confidence 8764
No 370
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=78.19 E-value=42 Score=37.07 Aligned_cols=129 Identities=19% Similarity=0.095 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHhcC-CChH---H----HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHH
Q 003249 493 QNVEAALAEINRILGFK-LALE---C----LELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH 564 (836)
Q Consensus 493 g~~~eAi~~~~kai~l~-P~~~---~----~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~ 564 (836)
+-.+++...+++|...+ |.+. + .+.++. ....-|+..-...|+....+.|+-.-..++..+.....+-.
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~-~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~-- 346 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARAR-RAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPA-- 346 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhc-ccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHH--
Confidence 33566777777777654 2321 1 111111 33456777777888888888888765555543221111100
Q ss_pred hhhHhHHHHHHhhhhccCcccccchHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 003249 565 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLES--DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (836)
Q Consensus 565 ~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~--~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~ 642 (836)
-.|+.++-..+. =-++-..|--+|.++.++|+.+||-..|++|+.+.++.++..+
T Consensus 347 -----------------------agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 347 -----------------------AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred -----------------------hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 013333322222 1234566778999999999999999999999999999999877
Q ss_pred HHHHH
Q 003249 643 YEGWI 647 (836)
Q Consensus 643 ~~G~i 647 (836)
.++..
T Consensus 404 l~~r~ 408 (415)
T COG4941 404 LRQRL 408 (415)
T ss_pred HHHHH
Confidence 66654
No 371
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.56 E-value=18 Score=39.22 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~ 685 (836)
++..++..+...++++.+.+.+++.++.+|-+-.+|..+=.+|+..|+...|+..|++.=.+. ..+.|
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~------------~edlg 222 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL------------AEELG 222 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh------------hhhcC
Confidence 455566677889999999999999999999999999999999999999999999998876531 12234
Q ss_pred cCCCChhHHHHHHHHHhcCCcc
Q 003249 686 QDSSCSSTVVSLLEDALKCPSD 707 (836)
Q Consensus 686 l~~~~~~~~i~~l~~Al~~~~~ 707 (836)
++|. ..+..+|++++.+++.
T Consensus 223 i~P~--~~~~~~y~~~~~~~~~ 242 (280)
T COG3629 223 IDPA--PELRALYEEILRQDPL 242 (280)
T ss_pred CCcc--HHHHHHHHHHhccccc
Confidence 4443 3445666776655444
No 372
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.56 E-value=53 Score=32.16 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=51.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 616 ~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
..++++++...+....-+.|+.++.-..-||++...|+++||+..+++..+-.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 48889999999999999999999999999999999999999999999998876665
No 373
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.96 E-value=25 Score=41.76 Aligned_cols=100 Identities=11% Similarity=-0.026 Sum_probs=81.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHH
Q 003249 517 LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (836)
Q Consensus 517 ~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~a 596 (836)
+-+.-.+++.+|..+++.|...+.--|.+.+-.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~----------------------------------------------- 391 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSD----------------------------------------------- 391 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhh-----------------------------------------------
Confidence 345668899999999999999999888763200
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 597 l~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
..+....++..+|+++.+.+.|.+.++.|=+.+|..+---...-.+...-|.-++|+....+...+-
T Consensus 392 -----~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 392 -----RFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred -----HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 0123345667799999999999999999999999999988888888888999999999887776553
No 374
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.85 E-value=15 Score=39.79 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG 507 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~ 507 (836)
+.++..+++.++++|.+...|..+-.+|...|+...||..|++.=.
T Consensus 170 ~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 170 DAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455556666777777777777777777777777777777666543
No 375
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=75.78 E-value=73 Score=35.34 Aligned_cols=106 Identities=18% Similarity=0.087 Sum_probs=57.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcC----C-chhHHhhHHHH---HHhcCCHHHHHHH--HHHHHHhcC-------CCHHH
Q 003249 718 LGSVYVDCGQLDLAADCYSNALKI----R-HTRAHQGLARV---HFLKNNKTTAYEE--MTKLIKKAR-------NNASA 780 (836)
Q Consensus 718 lG~~y~~~g~~deAi~~y~kAL~l----~-~~~A~~~la~~---~~~~g~~~~A~~~--~~kaie~~p-------~~a~A 780 (836)
=|..+.+-.+|.-|..+|=+|++= + +..|...|-.. .--.+..++--.- -..+++.+. .-|+|
T Consensus 215 SGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA 294 (411)
T KOG1463|consen 215 SGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEA 294 (411)
T ss_pred ccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHH
Confidence 356666667888888888888872 2 23444433321 1122333221111 112222222 23666
Q ss_pred HHHHHHccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhhhhhh
Q 003249 781 YEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNLHIT 827 (836)
Q Consensus 781 y~~r~~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~~~~~ 827 (836)
+.||+-. |++.|++||..=+.-||- ....=...+-.++++.|.
T Consensus 295 ~~nRSLk-dF~~AL~~yk~eL~~D~i---vr~Hl~~Lyd~lLEknl~ 337 (411)
T KOG1463|consen 295 FGNRSLK-DFEKALADYKKELAEDPI---VRSHLQSLYDNLLEKNLC 337 (411)
T ss_pred hcCCcHH-HHHHHHHHhHHHHhcChH---HHHHHHHHHHHHHHHhHH
Confidence 7777643 789999999999988884 222333344444454443
No 376
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=75.61 E-value=14 Score=36.58 Aligned_cols=91 Identities=18% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCC--------------------
Q 003249 189 HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLN-------------------- 248 (836)
Q Consensus 189 ~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~-------------------- 248 (836)
+|+.|.+-+.+. ..|.-..+|+...-.......|.|+ +|+..+|..+++|++.-+-+
T Consensus 13 DG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHHH-HHhHHHHHHHHHcCCCccCCccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 677788777754 5677888877643222222578888 79999999999999984321
Q ss_pred ----CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003249 249 ----GVTPNLLLEILIFANKFCCERLKDACDRKLASLV 282 (836)
Q Consensus 249 ----~~~~~~v~~lL~aA~~~c~~~L~~~c~~~l~~~v 282 (836)
.++.+++.+|+.||+.+-+..|...|.+..+.++
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 0234578899999999999999999888777665
No 377
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=75.48 E-value=3.9 Score=45.03 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 480 ~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
..+.+.+.+....+.+..|+-.-.-+++.+++ ..+++-||..+..+.++++|++++..+...+|++..
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 34444666666777777777766666666665 356666777777777777777777777777777643
No 378
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.46 E-value=16 Score=36.22 Aligned_cols=79 Identities=14% Similarity=-0.005 Sum_probs=63.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+.-.-.+.|+.++.-.-.|.++...|++.+|++.++.+.+-.|..+.+--.++++|+.+|+.+== ...+++++-.++.
T Consensus 32 lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr-~~A~evle~~~d~ 110 (160)
T PF09613_consen 32 LLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR-RYADEVLESGADP 110 (160)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH-HHHHHHHhcCCCh
Confidence 344455678999999999999999999999999999999999999998888899999998887511 1234455554443
No 379
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=75.03 E-value=16 Score=46.17 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=54.2
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcccc
Q 003249 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-----HCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G-----~~eeAl~~~~~Ai~l~p~ 670 (836)
-.|.-+.-|..++++|.++|+++|=+++|..|++.-|+.|+.-..+-.+-+++. +...|+.-.--++.+-|.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 547 GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPE 623 (932)
T ss_pred CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 348888999999999999999999999999999999999998766666655432 233444444445555554
No 380
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.73 E-value=83 Score=33.78 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHHhcCCChHHH-----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 492 KQNVEAALAEINRILGFKLALECL-----ELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 492 ~g~~~eAi~~~~kai~l~P~~~~~-----~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
..+.++|++.|.+++++.|.-..| -..-.+++.+|+|++-...|.+.|+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 457889999999999998853223 2234578889999999999888876
No 381
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=74.25 E-value=11 Score=40.26 Aligned_cols=61 Identities=20% Similarity=-0.029 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCChHHHHHHHHHHHh
Q 003249 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF-KLALECLELRFCFFLA 524 (836)
Q Consensus 464 Ai~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l-~P~~~~~~~rg~~~~~ 524 (836)
|...|.+|+.+.|++..+|+.+|.+....|+.=+|+=.|-|++-. .|-+.+..|+..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 567799999999999999999999999999999999999999965 3445667777666655
No 382
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=73.42 E-value=1.7e+02 Score=33.12 Aligned_cols=76 Identities=11% Similarity=-0.073 Sum_probs=60.0
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------c-----CCC------------C---HHHHHHHHH
Q 003249 596 MLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ---------H-----AAS------------D---HERLVYEGW 646 (836)
Q Consensus 596 al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~---------l-----~P~------------~---~eal~~~G~ 646 (836)
.|..+|-+..++...+.++...|+++.|.+.+++|+= . ++. + --+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 4567899999999999999999999999999888862 1 111 1 224555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccch
Q 003249 647 ILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 647 il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+.+.|-+.-|++..+--+.++|..
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~ 136 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDE 136 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCC
Confidence 7788999999999999999999873
No 383
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=73.21 E-value=2.2e+02 Score=34.54 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHH
Q 003249 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN 717 (836)
Q Consensus 638 ~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~n 717 (836)
..|+.++|..+.++..+++|.++|.+.-......+.+|.. .. ...+|...+..++ +...+--
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~l-e~--------------f~~LE~la~~Lpe---~s~llp~ 857 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRL-EL--------------FGELEVLARTLPE---DSELLPV 857 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHH-Hh--------------hhhHHHHHHhcCc---ccchHHH
Confidence 4588999999999999999999998876554444433321 00 1112222222222 2356777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 003249 718 LGSVYVDCGQLDLAADCYSNAL 739 (836)
Q Consensus 718 lG~~y~~~g~~deAi~~y~kAL 739 (836)
+|..+..-|.-++|.++|-+--
T Consensus 858 ~a~mf~svGMC~qAV~a~Lr~s 879 (1189)
T KOG2041|consen 858 MADMFTSVGMCDQAVEAYLRRS 879 (1189)
T ss_pred HHHHHHhhchHHHHHHHHHhcc
Confidence 8888999999999999886543
No 384
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=72.93 E-value=13 Score=32.10 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
..+...|.-.-..|+|++|+.+|.+||+.
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666677778999999999887764
No 385
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=72.75 E-value=1.5e+02 Score=35.02 Aligned_cols=147 Identities=7% Similarity=-0.038 Sum_probs=98.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHH
Q 003249 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (836)
Q Consensus 594 ~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a 673 (836)
.+-|+.+|.+..+|+.+-.-+... -+++....|++....-|..+.+|..--.-.+...+|+.--..|.+.|.--=+-.-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDL 88 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDL 88 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhH
Confidence 567889999999999877655554 8999999999999999999999988888888888998887777777632111110
Q ss_pred H-HHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHcC
Q 003249 674 F-FLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSV---------YVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 674 ~-~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~---------y~~~g~~deAi~~y~kAL~l 741 (836)
+ ...-|....++...++-....+.|+-+++...-.+.....|...++- |.+..+.+.-...|++||.-
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 0 01122222333333333444455666665544444444555555443 45566888888999999875
No 386
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.26 E-value=7.6 Score=46.94 Aligned_cols=131 Identities=20% Similarity=0.107 Sum_probs=94.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHH
Q 003249 643 YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVY 722 (836)
Q Consensus 643 ~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y 722 (836)
..|.+++..+++++|.-.|..++.+.|.... ..+....|....|
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~------------------------------------~~a~~~~~~~s~~ 101 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH------------------------------------VVATLRSNQASCY 101 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccccch------------------------------------hhhhHHHHHHHHH
Confidence 4589999999999999999999998885410 0012334555554
Q ss_pred H--hcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHccCHHHHHHHHH
Q 003249 723 V--DCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLE 798 (836)
Q Consensus 723 ~--~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~~~~~~A~~D~~ 798 (836)
+ ..|+|..++...+-|+...| ..+..-+++.|.-.++++-|+.+..-.....|++.++-..--++ .....++.
T Consensus 102 m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~el---k~ll~~~d 178 (748)
T KOG4151|consen 102 MQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEEL---KGLLELKD 178 (748)
T ss_pred hhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHH---HHHHhhcC
Confidence 4 45699999999999998766 47888899999999999999999666668899997665543333 44455666
Q ss_pred HhH---hcCCCCcccch
Q 003249 799 MVT---QLDPLRVYPYR 812 (836)
Q Consensus 799 ~Ai---~l~P~~~~~y~ 812 (836)
.+. ++.+.+..|.-
T Consensus 179 ~~s~~~~~~~~~~~~vg 195 (748)
T KOG4151|consen 179 LASDESELPLEAVAPVG 195 (748)
T ss_pred CccccccCChhhhcccc
Confidence 666 66666665543
No 387
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=71.00 E-value=1.2e+02 Score=33.56 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCch----hHHhhHHHHHHhcC----------C------HHHHHHHHHHHHHh---
Q 003249 717 NLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKN----------N------KTTAYEEMTKLIKK--- 773 (836)
Q Consensus 717 nlG~~y~~~g~~deAi~~y~kAL~l~~~----~A~~~la~~~~~~g----------~------~~~A~~~~~kaie~--- 773 (836)
.++..-.++|+..||+..++.-.+--|. ..|.|+-.+++... + .+.|--.|+.|+-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RA 359 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRA 359 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHH
Confidence 4566677788888888887766543221 23444433333322 1 12233344444411
Q ss_pred -cCC-CHHHHHHHHHccCHHHHHHHHHHhHhcCCCCcccch
Q 003249 774 -ARN-NASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYR 812 (836)
Q Consensus 774 -~p~-~a~Ay~~r~~~~~~~~A~~D~~~Ai~l~P~~~~~y~ 812 (836)
..+ .+++-.+||-----.-|++...+|.+-||. +.+|.
T Consensus 360 Va~kFspd~asrRGLS~AE~~AvEAihRAvEFNPH-VPkYL 399 (556)
T KOG3807|consen 360 VSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPH-VPKYL 399 (556)
T ss_pred HHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCC-CcHHH
Confidence 111 233334443222235699999999999997 44554
No 388
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=70.64 E-value=22 Score=30.64 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHH
Q 003249 464 RWEDLDKATALDPTLSYPYMYR 485 (836)
Q Consensus 464 Ai~d~~kAi~ldP~~~~ay~~r 485 (836)
|++.+.+++.+.|+++..-..+
T Consensus 32 aIe~L~q~~~~~pD~~~k~~yr 53 (75)
T cd02682 32 AIEVLSQIVKNYPDSPTRLIYE 53 (75)
T ss_pred HHHHHHHHHHhCCChHHHHHHH
Confidence 3333555555555555443333
No 389
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=69.17 E-value=13 Score=39.57 Aligned_cols=54 Identities=11% Similarity=-0.133 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchHHHHH
Q 003249 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFEAFFL 676 (836)
Q Consensus 623 Al~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~-p~~~a~~~ 676 (836)
|.+.|.+|+.+.|+....|+.+|.+....|+.=+|+=.|-+|+... |...|.-+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~N 55 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSAREN 55 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHH
Confidence 5677888888888888888888888888888888888888887665 43334433
No 390
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.72 E-value=2.4e+02 Score=32.98 Aligned_cols=167 Identities=12% Similarity=0.048 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---cCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch--HHHHH
Q 003249 609 RQSLLLLRLNCPEAAMRSLQLARQ---HAAS-------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF--EAFFL 676 (836)
Q Consensus 609 ~~gl~l~~l~~~~eAl~~~~~Al~---l~P~-------~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~--~a~~~ 676 (836)
.+..+..-.|++.+|++....+.+ ..|. .+..++.+|.--...|.+++|-..|..|.++--+- .|+-+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333445557888888887777664 3444 45667888888888899999999999998775332 33322
Q ss_pred --HHHHhhccccCCCChhHHHHHHHHHhcCCcccc-----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchh----
Q 003249 677 --KAYALADSSQDSSCSSTVVSLLEDALKCPSDRL-----RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR---- 745 (836)
Q Consensus 677 --~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~-----~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~---- 745 (836)
.|+.+-.. .......+.++. +.-+.... -.+.+++-.|...+.++++.||..-..+.|++.+..
T Consensus 408 lnlAi~YL~~----~~~ed~y~~ld~-i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~r 482 (629)
T KOG2300|consen 408 LNLAISYLRI----GDAEDLYKALDL-IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNR 482 (629)
T ss_pred HhHHHHHHHh----ccHHHHHHHHHh-cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHH
Confidence 23322221 111111111111 11110111 135678889999999999999999999999985331
Q ss_pred ----HHhhHHHHHHhcCCHHHHHHHHHHHHHhc---CCCHHH
Q 003249 746 ----AHQGLARVHFLKNNKTTAYEEMTKLIKKA---RNNASA 780 (836)
Q Consensus 746 ----A~~~la~~~~~~g~~~~A~~~~~kaie~~---p~~a~A 780 (836)
...-++.+.+-.|+-.++-.--.-++..+ |+...-
T Consensus 483 L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 483 LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence 23445667777888887776666666444 555433
No 391
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.03 E-value=1.5e+02 Score=30.62 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHhcCCHHHH
Q 003249 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-----ALECLELRFCFFLALEDYQAA 531 (836)
Q Consensus 477 ~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P-----~~~~~~~rg~~~~~lg~~~~A 531 (836)
+.++..+.+|..|. ..+.+.|+..+.+++++.+ |++.+..++.++.++|+++.|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34566666666555 7888999999999998744 467777889999999999887
No 392
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.02 E-value=15 Score=41.97 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=51.1
Q ss_pred hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHH
Q 003249 417 SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVE 496 (836)
Q Consensus 417 a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~ 496 (836)
+..|+.|++...|++..|++.++.. ..+. ..+ |. ..-+-+...+++.|-+|+-++||.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~--~~l----------------~~---~V~~~~is~~YyvGFaylMlrRY~ 181 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNK--KGL----------------YT---KVPACHISTYYYVGFAYLMLRRYA 181 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-Cccc--chh----------------hc---cCcchheehHHHHHHHHHHHHHHH
Confidence 6778999999999999998886532 2211 111 11 223456678999999999999999
Q ss_pred HHHHHHHHHHh
Q 003249 497 AALAEINRILG 507 (836)
Q Consensus 497 eAi~~~~kai~ 507 (836)
+||..|+.++-
T Consensus 182 DAir~f~~iL~ 192 (404)
T PF10255_consen 182 DAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHH
Confidence 99999999983
No 393
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=66.84 E-value=35 Score=35.89 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=26.2
Q ss_pred HHHHHHHHHHH---------HhcCCHHHHHHHHHHHHcCCch
Q 003249 712 GQALNNLGSVY---------VDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 712 ~~a~~nlG~~y---------~~~g~~deAi~~y~kAL~l~~~ 744 (836)
+-.|.-.|.++ .+.++...|+..+++|+++++.
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 45677788877 4667889999999999999764
No 394
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.74 E-value=2.3e+02 Score=32.92 Aligned_cols=46 Identities=17% Similarity=-0.016 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 003249 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE 656 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~ee 656 (836)
+..-|.++|.+-++.|+++-|..+|+++-. +..+..+|.-.|+.+.
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREK 391 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHH
Confidence 445666666677777777777777776532 2234555556666543
No 395
>PHA03098 kelch-like protein; Provisional
Probab=64.55 E-value=4.4 Score=48.10 Aligned_cols=88 Identities=11% Similarity=0.156 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhcccCCC-----hHHH
Q 003249 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN-----DERV 324 (836)
Q Consensus 250 ~~~~~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~~l~-----~~~~ 324 (836)
++.+|+.+++.+|+.+.+..|++.|...++.....+ ........|....+..++......+. .+.+
T Consensus 105 l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v---------~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av 175 (534)
T PHA03098 105 IDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELI---------YNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEII 175 (534)
T ss_pred CCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH---------hcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHH
Confidence 678999999999999999999999988765432111 11111112222223333333222232 2568
Q ss_pred HHHHhcccc-cch--hhhhcccchh
Q 003249 325 VEIFSHANR-QHR--SIMVGLASFS 346 (836)
Q Consensus 325 ~~ll~~~~~-~~r--~~~~~~~~~~ 346 (836)
++|+.++.. |.+ ..+++++||+
T Consensus 176 ~~W~~~~~~~r~~~~~~ll~~vR~~ 200 (534)
T PHA03098 176 IKWLTSKKNNKYKDICLILKVLRIT 200 (534)
T ss_pred HHHHhcChhhhHhHHHHHHhhcccc
Confidence 889988743 222 2557888886
No 396
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=64.09 E-value=13 Score=33.18 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHhhccc--------CCChHHHHHHHhcccc
Q 003249 289 VELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVEIFSHANR 333 (836)
Q Consensus 289 ~~~~~~a~~~~a~~L~~~c~~~~~~~~~~--------~l~~~~~~~ll~~~~~ 333 (836)
+.++.+|..++...|...|.+++..|+.. .++.+.+..++++++.
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l 54 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDL 54 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS-
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhcccc
Confidence 34455555555555555555555554433 2445666677777654
No 397
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=63.50 E-value=11 Score=32.75 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003249 493 QNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTL 541 (836)
Q Consensus 493 g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l 541 (836)
+-|+.|.+.+++||..+ +.|+.++|+..|++++..
T Consensus 3 ~~~~~A~~~I~kaL~~d--------------E~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 3 GYYKQAFEEISKALRAD--------------EWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hHHHHHHHHHHHHhhhh--------------hcCCHHHHHHHHHHHHHH
Confidence 34667777777666543 557777777777777753
No 398
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.90 E-value=25 Score=36.62 Aligned_cols=59 Identities=14% Similarity=0.020 Sum_probs=53.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 613 ~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
-+++-++.++|+...+.-++-+|.++.....+=..|.-.|++++|+.-.+-+-.+.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 35678899999999999999999999998888889999999999999999999998887
No 399
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.55 E-value=43 Score=32.79 Aligned_cols=66 Identities=21% Similarity=0.101 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCC
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED 527 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~ 527 (836)
+++..-++..--+.|+.+..-..-|.+++..|+++||+..++...+-.|. +-+--..++++..+||
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 44555566666788888888888888999999999999999988887776 4444456777777776
No 400
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=60.68 E-value=24 Score=39.90 Aligned_cols=107 Identities=13% Similarity=0.022 Sum_probs=59.1
Q ss_pred HHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHHHHH
Q 003249 390 GCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLD 469 (836)
Q Consensus 390 G~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d~~ 469 (836)
+..++.+|.|.-|+.-|..|+++....+..+-. .+...|+ +..... .+-+.+...|... +..+-|+..-.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~-~~~~~~d----i~~vaS--fIetklv~CYL~~---rkpdlALnh~h 252 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKP-FKASAED----ISSVAS--FIETKLVTCYLRM---RKPDLALNHSH 252 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCC-CCCChhh----HHHHHH--HHHHHHHHhhhhc---CCCchHHHHHh
Confidence 445667777877888888887763221100000 0000000 000000 1112333334333 23366777777
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (836)
Q Consensus 470 kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai 506 (836)
+.|-+||.+.-.+..+|.++..+.||.+|-..+--|.
T Consensus 253 rsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 253 RSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888877665554
No 401
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=59.83 E-value=13 Score=30.97 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+..+.+.|.-+-+.|++++|+++|.+|++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345667777788889999999999888775
No 402
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.51 E-value=2e+02 Score=30.21 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=52.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 488 SLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 488 ~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
-+.+.++.++||.....-++-+|.. ..-+.+..++.-.|+|++|+.-++-+-++.|++..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 5778899999999999999999964 55666778888999999999999999999999853
No 403
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=57.33 E-value=15 Score=31.93 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
-|++|.+..++|++.+ +.|+.++|+..|+++|.
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------hcCCHHHHHHHHHHHHH
Confidence 3667777777776665 45899999999999985
No 404
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.99 E-value=1.3e+02 Score=34.14 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCH-HHHH--HHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQH-AASDH-ERLV--YEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l-~P~~~-eal~--~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
....++..+.+.++|.+|.+.++...+- .++.. +.+. .+|.-+=+.-++++|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567777888999999999999999985 44433 2333 3455566999999999999998864
No 405
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.79 E-value=72 Score=37.13 Aligned_cols=108 Identities=16% Similarity=0.081 Sum_probs=69.5
Q ss_pred HHHHHHhHhccCCchHHHHHhhhcC----ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC
Q 003249 435 YEKLNSVISSVTPLGWMYQERSLYC----EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN-VEAALAEINRILGFK 509 (836)
Q Consensus 435 ~~~~~~ai~~~~~~~~ay~~r~~~~----~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~-~~eAi~~~~kai~l~ 509 (836)
...|..+....+.....|..--.|+ .+.+--..|.+++..+|++++.|..-+.-.++-+. .+.|-+.|.++|+++
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 4566677766665554443332221 12344556999999999999999999999988888 999999999999999
Q ss_pred CCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 510 LAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 510 P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
|+. ..|.. .+...+ .|-+=+..-++++.++-..
T Consensus 171 pdsp~Lw~e--yfrmEL-~~~~Kl~~rr~~~g~~~~~ 204 (568)
T KOG2396|consen 171 PDSPKLWKE--YFRMEL-MYAEKLRNRREELGLDSSD 204 (568)
T ss_pred CCChHHHHH--HHHHHH-HHHHHHHHHHHHhccccch
Confidence 984 43321 111111 1222234445666666554
No 406
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.76 E-value=4.1e+02 Score=31.43 Aligned_cols=66 Identities=24% Similarity=0.260 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC----C-----chhHHhhHHHHHHhcCC-HHHHHHHHHHHHHhcCCCHHHH
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALKI----R-----HTRAHQGLARVHFLKNN-KTTAYEEMTKLIKKARNNASAY 781 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~l----~-----~~~A~~~la~~~~~~g~-~~~A~~~~~kaie~~p~~a~Ay 781 (836)
+--+.-+|.++..+|+-..|..+|+.+++- + ++.|++-+|.+++.+|. .+++. +-+..+.+++.-|
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~----~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEAR----ALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHH----HHHHHHHhhcccc
Confidence 456778899999999999999999999842 1 35799999999999998 55554 5555555555555
No 407
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=55.45 E-value=2.5e+02 Score=33.86 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=44.8
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 468 ~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
++-+-+++-..-++....+.-+..+..+.-|-+.|.+.=..+ ..-..+.+.|++.+|.+--++--++-|+-.+
T Consensus 736 idI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~k-------siVqlHve~~~W~eAFalAe~hPe~~~dVy~ 808 (1081)
T KOG1538|consen 736 IDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLK-------SLVQLHVETQRWDEAFALAEKHPEFKDDVYM 808 (1081)
T ss_pred HHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHH-------HHhhheeecccchHhHhhhhhCccccccccc
Confidence 444455555555666666666666666666666665542111 1224466778888888776666666666544
Q ss_pred hhhh
Q 003249 548 FEGR 551 (836)
Q Consensus 548 ~~~~ 551 (836)
.|++
T Consensus 809 pyaq 812 (1081)
T KOG1538|consen 809 PYAQ 812 (1081)
T ss_pred hHHH
Confidence 4443
No 408
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=55.27 E-value=57 Score=34.34 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=15.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 003249 488 SLMTKQNVEAALAEINRILGFKLA 511 (836)
Q Consensus 488 ~l~~~g~~~eAi~~~~kai~l~P~ 511 (836)
-+++-|+++.|+.....||+.+-.
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCC
Confidence 456677777777777777766553
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=54.84 E-value=67 Score=36.51 Aligned_cols=122 Identities=14% Similarity=0.133 Sum_probs=60.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh-CCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHH
Q 003249 518 RFCFFLALEDYQAALCDVQAILTL-SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (836)
Q Consensus 518 rg~~~~~lg~~~~Ai~d~~~al~l-~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~a 596 (836)
++.-.+..++|..|.+-|+...+- .++-. ++........|+.|..++...+...+.+.
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~---------------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGREE---------------------YQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchhh---------------------HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344566777888888888777763 33221 12222233445666666666666666665
Q ss_pred HhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHH------HHhcCCHHHHHHHHHHHH
Q 003249 597 LESDA---PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH--ERLVYEGWI------LYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 597 l~~~P---~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~--eal~~~G~i------l~~~G~~eeAl~~~~~Ai 665 (836)
+...- .....+..+.-+. +++..+........... -.+..++.+ ...+|+|+.|+..+=+++
T Consensus 196 ~~~~~~l~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~l 268 (379)
T PF09670_consen 196 LKRDKALNQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRAL 268 (379)
T ss_pred HHHhhhhHhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55421 1112222222222 22222222222222211 022222222 346899999999888888
Q ss_pred hc
Q 003249 666 QM 667 (836)
Q Consensus 666 ~l 667 (836)
++
T Consensus 269 El 270 (379)
T PF09670_consen 269 EL 270 (379)
T ss_pred HH
Confidence 75
No 410
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.12 E-value=69 Score=39.41 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=35.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-ccch
Q 003249 614 LLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWILYDTSHCEEGLRKAEESIQM-KRSF 671 (836)
Q Consensus 614 l~~l~~~~eAl~~~~~Al~l~P~~-~eal~~~G~il~~~G~~eeAl~~~~~Ai~l-~p~~ 671 (836)
+.+.+.|+-|+.....- ..+++. ++.+-..|.-++..|++++|...|-++|.- +|++
T Consensus 344 L~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~ 402 (933)
T KOG2114|consen 344 LFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE 402 (933)
T ss_pred HHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH
Confidence 34445555555433221 122222 345667889999999999999999999953 4544
No 411
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.88 E-value=3e+02 Score=31.50 Aligned_cols=58 Identities=10% Similarity=0.025 Sum_probs=32.5
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHHhc----CC---C---hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 480 YPYMYR--ASSLMTKQNVEAALAEINRILGF----KL---A---LECLELRFCFFLALEDYQAALCDVQA 537 (836)
Q Consensus 480 ~ay~~r--g~~l~~~g~~~eAi~~~~kai~l----~P---~---~~~~~~rg~~~~~lg~~~~Ai~d~~~ 537 (836)
++|..+ .+-+++++++.+|.+.-+..+.- |- + ...|+....+|...|+...--..+..
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~ 194 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHA 194 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 444443 33346678899988876665531 11 1 12355566677777875554444433
No 412
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.60 E-value=2.8e+02 Score=30.95 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=37.1
Q ss_pred CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 003249 634 AASDHE---RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (836)
Q Consensus 634 ~P~~~e---al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~ 682 (836)
.|++-| ..+++|.-|....+++.|.-.|++|...+....-||.++...+
T Consensus 118 ~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~ka 169 (449)
T COG3014 118 GGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQKA 169 (449)
T ss_pred CchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 3567888899999999999999999988776666776655433
No 413
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.82 E-value=8.8e+02 Score=34.06 Aligned_cols=142 Identities=16% Similarity=0.132 Sum_probs=102.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-cchH------
Q 003249 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-RSFE------ 672 (836)
Q Consensus 600 ~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~-p~~~------ 672 (836)
+..-++.|.+.+.+-.+.|+++-|...+-.|-+.. -++++.-++..+-.+|+-..|+...++.++++ |+..
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 34567889999999999999999999999999888 67899999999999999999999999999876 5411
Q ss_pred ------HHHHHHHHh-----hccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHH------------HHHHhcCCHH
Q 003249 673 ------AFFLKAYAL-----ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG------------SVYVDCGQLD 729 (836)
Q Consensus 673 ------a~~~~a~aL-----~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG------------~~y~~~g~~d 729 (836)
-.+.++..+ ..++. -.+...+..|.++.++.+..- +-|+.+| +.+.+.|++.
T Consensus 1744 p~~~n~~i~~~~~L~~~~~~~es~n--~~s~~ilk~Y~~~~ail~ewe---~~hy~l~~yy~kll~~~~~~~~E~~g~~~ 1818 (2382)
T KOG0890|consen 1744 PQSVNLLIFKKAKLKITKYLEESGN--FESKDILKYYHDAKAILPEWE---DKHYHLGKYYDKLLEDYKSNKMEKSGRVL 1818 (2382)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHccccc---CceeeHHHHHHHHhhhhhcccccccccHH
Confidence 133333222 22221 456667788899998887543 2344444 3445667777
Q ss_pred H---HHHHHHHHHcCCchhHHh
Q 003249 730 L---AADCYSNALKIRHTRAHQ 748 (836)
Q Consensus 730 e---Ai~~y~kAL~l~~~~A~~ 748 (836)
- |+--|-+|+.-++...+.
T Consensus 1819 ~~l~~~~~~~~sl~yg~~~iyq 1840 (2382)
T KOG0890|consen 1819 SLLKAIYFFGRALYYGNQHLYQ 1840 (2382)
T ss_pred HHHHHHHHHHHHHHhcchhHHH
Confidence 7 666677888776544333
No 414
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=51.60 E-value=63 Score=27.88 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~ 411 (836)
+..+...+.-.-..|+|++|+.+|..||+
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444445555555555555555544443
No 415
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.98 E-value=26 Score=30.16 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=12.9
Q ss_pred hcCCHHHHHHHHHHHHhh
Q 003249 524 ALEDYQAALCDVQAILTL 541 (836)
Q Consensus 524 ~lg~~~~Ai~d~~~al~l 541 (836)
..|+|++|+..|.+|++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 567777777777777764
No 416
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=49.63 E-value=31 Score=28.76 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~ 411 (836)
++|..+...|...-+.|+|++|+.+|.+|++
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3556677778888888888888888888776
No 417
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.96 E-value=5.4e+02 Score=30.80 Aligned_cols=148 Identities=17% Similarity=0.089 Sum_probs=89.7
Q ss_pred chHHHHHHHHHHHhc-c-------------chhhHhhHHHHHHhcCCHHHHHHHHHHhHhc-------------------
Q 003249 398 EYDEAEHLFEAAVNA-G-------------HIYSIAGLARLGYIKGHKLWAYEKLNSVISS------------------- 444 (836)
Q Consensus 398 ~y~eAi~~f~~Al~l-~-------------~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~------------------- 444 (836)
.|.+|...|.-|+.. + |.+++..+|.+...+|+.+-|.....+++-.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 367777778777653 1 3356678888899999988887777776532
Q ss_pred --cCCchHHHHHh-------hhcCChhhHHHHHHHHHhcCCC-ChHHHHHHHHHHH-hcCCHHHHHHHHHHHH-----hc
Q 003249 445 --VTPLGWMYQER-------SLYCEGDKRWEDLDKATALDPT-LSYPYMYRASSLM-TKQNVEAALAEINRIL-----GF 508 (836)
Q Consensus 445 --~~~~~~ay~~r-------~~~~~~~eAi~d~~kAi~ldP~-~~~ay~~rg~~l~-~~g~~~eAi~~~~kai-----~l 508 (836)
+|.+-..|... ..-|...-|++...-.+.+||. ++.+-...-..|. ...+|.=-|..++..- .+
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~ 412 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ 412 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh
Confidence 11122222111 1113347889989999999998 8777666555553 3344444444444332 22
Q ss_pred CCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCc
Q 003249 509 KLALECLELRFCFFLALED---YQAALCDVQAILTLSPDY 545 (836)
Q Consensus 509 ~P~~~~~~~rg~~~~~lg~---~~~Ai~d~~~al~l~P~~ 545 (836)
=||...=..++.+|..... -+.|+.++.+|++.-|.-
T Consensus 413 ~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 413 LPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLV 452 (665)
T ss_pred cCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHH
Confidence 2332211124555655554 788999999999999854
No 418
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.56 E-value=4e+02 Score=29.13 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-----ASDHE--RLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 601 P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~-----P~~~e--al~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
|+-...|...+.++.+.....++-.++..|.... |.--. .=..-|....+-.+|.-|-++|=+|++
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 4445556666667777777777777777666543 22111 122346666777888888888888875
No 419
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=48.31 E-value=55 Score=35.55 Aligned_cols=55 Identities=13% Similarity=-0.006 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 483 MYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQA 537 (836)
Q Consensus 483 ~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~ 537 (836)
...+..+.+.|.+.+|++..++++.++|= ...+..+-.++..+||--.|+..|++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 34566788999999999999999999994 45566677888999998888877764
No 420
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.93 E-value=27 Score=30.12 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+...+.-.-+.|+|++|+.+|.+||+.
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455555667778999999999888775
No 421
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=47.51 E-value=5.4e+02 Score=30.40 Aligned_cols=142 Identities=8% Similarity=-0.091 Sum_probs=76.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-c--c
Q 003249 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK-R--S 670 (836)
Q Consensus 594 ~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~-p--~ 670 (836)
+++|+. ..+-.+++.++.+|... ..+.=....++.++.+=+|+..=-.++..| ++++-+.+...|.+|+.-- | .
T Consensus 90 ~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI~~~q 166 (711)
T COG1747 90 TRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-EKIKKSKAAEFFGKALYRFIPRRQ 166 (711)
T ss_pred HHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhcchhh
Confidence 344444 33445667777777665 566667778888888888877655555544 4599999999999998421 1 0
Q ss_pred hHH---HHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 671 FEA---FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 671 ~~a---~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
+.+ .+.+... +-++..+....+..+.-+..+.. +-..++-..-.-|....++++||....-.|+++..
T Consensus 167 ~~~i~evWeKL~~-----~i~dD~D~fl~l~~kiqt~lg~~-~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k 237 (711)
T COG1747 167 NAAIKEVWEKLPE-----LIGDDKDFFLRLQKKIQTKLGEG-RGSVLMQDVYKKYSENENWTEAIRILKHILEHDEK 237 (711)
T ss_pred hhhHHHHHHHHHH-----hccccHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcch
Confidence 100 0111100 01122222222211111111110 00123333334466677999999999988888643
No 422
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.26 E-value=5.7e+02 Score=30.60 Aligned_cols=169 Identities=18% Similarity=0.055 Sum_probs=98.5
Q ss_pred HcCCHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hcccchHHHHHHH
Q 003249 616 RLNCPEAAMRSLQLARQH------------AASDHERLVYEGWILYDTSHCEEGLRKAEESI-----QMKRSFEAFFLKA 678 (836)
Q Consensus 616 ~l~~~~eAl~~~~~Al~l------------~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai-----~l~p~~~a~~~~a 678 (836)
..+.|++|++.|.-|... +|=+.+.+...+.+...+|+.+-|-+..+++| .+.|.|.-+.+..
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 356688899988888753 56678899999999999999999988888887 1122221000000
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch---hHHhhHHHHHH
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---RAHQGLARVHF 755 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~---~A~~~la~~~~ 755 (836)
.- -.+.|++-... .+++--=.-+...|=+..|.+...--+.++|. .+...+-..|.
T Consensus 330 --RL-~y~~~eNR~Fy------------------L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 330 --RL-PYIYPENRQFY------------------LALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred --cC-cccchhhHHHH------------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 00 00111111111 11222222345678899999999888898764 22222222333
Q ss_pred hcC-C------HHHHHHHHHHHHHhcCCC----HHHHHHHHHcc--CHHHHHHHHHHhHhcCCC
Q 003249 756 LKN-N------KTTAYEEMTKLIKKARNN----ASAYEKRSEYC--DRELTRADLEMVTQLDPL 806 (836)
Q Consensus 756 ~~g-~------~~~A~~~~~kaie~~p~~----a~Ay~~r~~~~--~~~~A~~D~~~Ai~l~P~ 806 (836)
++. + +-++++.+++ +..-||- |-|++-....- +++.|..++.+|++..|.
T Consensus 389 LrareYqwiI~~~~~~e~~n~-l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 389 LRAREYQWIIELSNEPENMNK-LSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHHhHHHHHHHHHHHHhhcc-HhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 322 2 2333333332 3344665 45565554432 589999999999999994
No 423
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=46.94 E-value=28 Score=29.63 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+...|.-+-..|++++|+.+|.+|++.
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666677788999999999888764
No 424
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=46.77 E-value=65 Score=27.70 Aligned_cols=43 Identities=26% Similarity=0.372 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhC--CHHHHHHHH
Q 003249 250 VTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAVELM 292 (836)
Q Consensus 250 ~~~~~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~--~~~~a~~~~ 292 (836)
++.+.+.+|+.+|+++.++.|...|...++..+. ++++...++
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~f 55 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYF 55 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHc
Confidence 5688999999999999999999999999888774 444444444
No 425
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.72 E-value=3.6e+02 Score=29.33 Aligned_cols=45 Identities=7% Similarity=-0.069 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 003249 620 PEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEES 664 (836)
Q Consensus 620 ~~eAl~~~~~Al~l~P~~~eal~~~G~il~~----~G~~eeAl~~~~~A 664 (836)
+++=++..-.++-.+|++..+|.++-++... .-.+++-++++.+-
T Consensus 209 l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k~ 257 (328)
T COG5536 209 LEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVMIGEKVEDLGKY 257 (328)
T ss_pred HHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHHHHHHHHHHHHhh
Confidence 4566677778888999999999887777543 22344444444333
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.73 E-value=51 Score=33.38 Aligned_cols=52 Identities=17% Similarity=0.020 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 494 ~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
..+..++...+.++..|++..+.+.+.++...|+.++|.+..+++..+-|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3556677778889999999999999999999999999999999999999943
No 427
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=45.65 E-value=4.6e+02 Score=30.12 Aligned_cols=24 Identities=38% Similarity=0.678 Sum_probs=20.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 718 LGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 718 lG~~y~~~g~~deAi~~y~kAL~l 741 (836)
=|.-|.++|+...|+.||.+|+.+
T Consensus 376 Ag~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 376 AGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 357789999999999999999876
No 428
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.38 E-value=1.4e+02 Score=35.89 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHH
Q 003249 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718 (836)
Q Consensus 639 eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nl 718 (836)
..+.+-+.-+++..+|..+++.|..++.--|.+. + +.+.+-..-++
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~--~--------------------------------~~~FaK~qR~l 400 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN--Y--------------------------------SDRFAKIQRAL 400 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh--h--------------------------------hhHHHHHHHHH
Confidence 3566667778899999999999999997555441 0 00112345688
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCchhH--HhhHHHHHHhcCCHHHHHHHHHHHH
Q 003249 719 GSVYVDCGQLDLAADCYSNALKIRHTRA--HQGLARVHFLKNNKTTAYEEMTKLI 771 (836)
Q Consensus 719 G~~y~~~g~~deAi~~y~kAL~l~~~~A--~~~la~~~~~~g~~~~A~~~~~kai 771 (836)
...|.++.++|.|.+.|..|=+.+|... ....-.+..-.|.-++|+...-+..
T Consensus 401 ~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 401 QVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8899999999999999999999876432 2233334445566677775554433
No 429
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=44.78 E-value=63 Score=35.35 Aligned_cols=80 Identities=8% Similarity=-0.079 Sum_probs=47.4
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL-RFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 468 ~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~-rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
|-+++..-|+++..|..-+.--...|-+.+--..|..+++..|. .+.|.. -+.-+...++.+.+..-|.++|++||+.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 44455555666666665555555556666666666666666664 344433 2344556666666666666666666666
Q ss_pred hh
Q 003249 546 RM 547 (836)
Q Consensus 546 ~~ 547 (836)
+.
T Consensus 176 p~ 177 (435)
T COG5191 176 PR 177 (435)
T ss_pred ch
Confidence 54
No 430
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=44.44 E-value=16 Score=40.39 Aligned_cols=121 Identities=12% Similarity=0.156 Sum_probs=83.1
Q ss_pred EEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHH--HHHHHHH
Q 003249 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNL--LLEILIF 261 (836)
Q Consensus 184 V~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~--v~~lL~a 261 (836)
+++......+++|+.+|...|+.|..+....-.-+....+.+. +++...+..+..|.|.+ +. -.+.+ +..++.+
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~c~~~~~~~~~l~~~-~e-k~e~~~~~ihll~~ 104 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKIL--GVPCKAVNVFIRFLYSS-LE-KHEMVFFDIHLLAL 104 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceee--cccccccchhhhhhccc-hh-hhHHHHHHHHHHhh
Confidence 3334456679999999999999998776554222233556666 68899999999999998 54 33333 3345555
Q ss_pred HHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHH
Q 003249 262 ANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCL 308 (836)
Q Consensus 262 A~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~ 308 (836)
...+-+..+++.+++.+-....+..+++..+..+....+..|..+|.
T Consensus 105 ~~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~h 151 (319)
T KOG1778|consen 105 SHVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKH 151 (319)
T ss_pred hhhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 44566677777777766655545567887787787777777765554
No 431
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=43.84 E-value=28 Score=37.95 Aligned_cols=80 Identities=6% Similarity=0.088 Sum_probs=64.4
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVY-EGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~-~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
++++-..-|+++..|..=+.--.+.+-+.+--..|..+++.+|.+++.|.. -..=+..-++++-+-..|.++|+++|+.
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 455556668888887665555556667888888999999999999999987 5566778899999999999999999876
Q ss_pred H
Q 003249 672 E 672 (836)
Q Consensus 672 ~ 672 (836)
+
T Consensus 176 p 176 (435)
T COG5191 176 P 176 (435)
T ss_pred c
Confidence 4
No 432
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=43.70 E-value=44 Score=23.79 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=20.2
Q ss_pred HHHHHHH--HHHhhcc-----chHHHHHHHHHHHhcc
Q 003249 384 LAFHQLG--CVRLLRK-----EYDEAEHLFEAAVNAG 413 (836)
Q Consensus 384 ~a~~~lG--~~~~~~g-----~y~eAi~~f~~Al~l~ 413 (836)
.+.+.+| ..+.... ++++|..+|++|.+.+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4667777 4444333 4789999999887654
No 433
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.12 E-value=38 Score=25.97 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 516 ELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 516 ~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
+.++.+|.++||++.|..-.+.++. .++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~~ 31 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE-EGDE 31 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH-cCCH
Confidence 4578899999999999999999994 5544
No 434
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.52 E-value=30 Score=29.79 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 715 LNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 715 ~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+...|..--..|+|++|+..|.+|++.
T Consensus 9 Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 9 LVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 444455555667888888888888875
No 435
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.29 E-value=48 Score=37.86 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------C--hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 481 PYMYRASSLMTKQNVEAALAEINRILGFKL--------A--LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 481 ay~~rg~~l~~~g~~~eAi~~~~kai~l~P--------~--~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
+...+-.+..-+|+|..|+...+-+ +++. . -..+|..|.+|..+++|.+|++.|..+|-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666788899999999876542 3332 1 13467899999999999999999999885
No 436
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.16 E-value=44 Score=28.83 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~ 411 (836)
+|..+...+.-.-+.|+|++|+.+|..||+
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666777777888889888888888876
No 437
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=42.08 E-value=2.5e+02 Score=32.06 Aligned_cols=44 Identities=18% Similarity=-0.005 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhhhhhheecccc
Q 003249 789 DRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNLHITVCISNL 833 (836)
Q Consensus 789 ~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~~~~~~~~~~~ 833 (836)
.+...++-|..-+..|-+++-.-|.|-.| .+.|=+.|.+--|-.
T Consensus 335 kF~~~leq~k~~f~~D~ty~LivRLR~NV-IkTgIR~ISlsYSRI 378 (493)
T KOG2581|consen 335 KFNETLEQFKDKFQADGTYTLIVRLRHNV-IKTGIRKISLSYSRI 378 (493)
T ss_pred HHHHHHHHHHHHHhhCCcchHHHHHHHHH-HHHhhhheeeeeeec
Confidence 46667777777788888998888888877 466666666655443
No 438
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.40 E-value=97 Score=38.90 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al 631 (836)
...|..+++++.++|++++|+..|-..+
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 6677788888888888888887765443
No 439
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=41.11 E-value=38 Score=29.07 Aligned_cols=28 Identities=25% Similarity=0.156 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
-+...|.-.-..|+|++|+.+|.+||+.
T Consensus 8 ~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 8 ALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455556666778899999999888774
No 440
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=40.83 E-value=1.3e+02 Score=36.71 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=15.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCC
Q 003249 617 LNCPEAAMRSLQLARQHAASD 637 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~~ 637 (836)
.|+|.+|+.......+++|..
T Consensus 379 And~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred ccCHHHHHHHHHHHhccCCce
Confidence 467788888888888887763
No 441
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.61 E-value=5.7e+02 Score=28.66 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 480 YPYMYRASSLMTKQNVEAALAEINRILGF 508 (836)
Q Consensus 480 ~ay~~rg~~l~~~g~~~eAi~~~~kai~l 508 (836)
...+++|+-|+..++++.|.-+|++|.+.
T Consensus 126 ~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 126 LINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 34677888888999999999988888753
No 442
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.45 E-value=2.1e+02 Score=32.46 Aligned_cols=21 Identities=0% Similarity=0.088 Sum_probs=17.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 003249 647 ILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 647 il~~~G~~eeAl~~~~~Ai~l 667 (836)
.-..+|+|+.|+...=+++++
T Consensus 255 rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 255 RRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHHHccCHHHHHHHHHHHHHH
Confidence 344899999999988888875
No 443
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.12 E-value=4.6e+02 Score=32.73 Aligned_cols=17 Identities=35% Similarity=0.390 Sum_probs=10.5
Q ss_pred HHHHHhcCCHHHHHHHH
Q 003249 645 GWILYDTSHCEEGLRKA 661 (836)
Q Consensus 645 G~il~~~G~~eeAl~~~ 661 (836)
-.++..+|+|+||+.++
T Consensus 497 ~ille~~~ny~eAl~yi 513 (933)
T KOG2114|consen 497 DILLEDLHNYEEALRYI 513 (933)
T ss_pred HHHHHHhcCHHHHHHHH
Confidence 34556667777776644
No 444
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=39.50 E-value=8.4 Score=34.33 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhh
Q 003249 256 LEILIFANKFCCERLKDACDRKLASL 281 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l~~~ 281 (836)
.+++.+|..+.+..|...|...+...
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~n 27 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKN 27 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHH
Confidence 57889999999999999999877653
No 445
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.41 E-value=5.8e+02 Score=28.41 Aligned_cols=102 Identities=8% Similarity=-0.108 Sum_probs=52.5
Q ss_pred HHHHHHHHHhHhccCCchHHHHHhhhc--CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003249 432 LWAYEKLNSVISSVTPLGWMYQERSLY--CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK 509 (836)
Q Consensus 432 ~~A~~~~~~ai~~~~~~~~ay~~r~~~--~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~ 509 (836)
.+-++.-..+++++|..+.+|.-...- -...+|...+.+|++.- +.-+++.......|..-+|. .+-|
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~da~------~rRD 270 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQHEAQ------LRRD 270 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccchhhh------hhcc
Confidence 334444445666666666666544321 11134444455555431 22233333333333333322 2233
Q ss_pred CChHHHHHH--HHHHHhcCCHHHHHHHHHHHHhhCC
Q 003249 510 LALECLELR--FCFFLALEDYQAALCDVQAILTLSP 543 (836)
Q Consensus 510 P~~~~~~~r--g~~~~~lg~~~~Ai~d~~~al~l~P 543 (836)
-+...|..| +.+-.++|+..+|++-|+...+--|
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 333444443 6677888999999988888877777
No 446
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=39.40 E-value=46 Score=23.09 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhc----cchHHHHHHHHHHHhc
Q 003249 384 LAFHQLGCVRLLR----KEYDEAEHLFEAAVNA 412 (836)
Q Consensus 384 ~a~~~lG~~~~~~----g~y~eAi~~f~~Al~l 412 (836)
.+.+.+|..+... .+..+|+.+|++|.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 3566777776543 3678888888888764
No 447
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=39.24 E-value=72 Score=21.18 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 003249 618 NCPEAAMRSLQLARQHAASDHERLVYEG 645 (836)
Q Consensus 618 ~~~~eAl~~~~~Al~l~P~~~eal~~~G 645 (836)
|.++.|...|++++...|.++..|....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3566777788888888887777775544
No 448
>PF12854 PPR_1: PPR repeat
Probab=38.61 E-value=67 Score=22.77 Aligned_cols=28 Identities=4% Similarity=-0.151 Sum_probs=13.8
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 509 KLALECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 509 ~P~~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
.||.-.|..+-..|-+.|+.++|++-|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444444444444555555555555444
No 449
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.61 E-value=1.8e+02 Score=34.75 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=9.0
Q ss_pred HHHhcCCHHHHHHHH
Q 003249 647 ILYDTSHCEEGLRKA 661 (836)
Q Consensus 647 il~~~G~~eeAl~~~ 661 (836)
.+..+|+++++++..
T Consensus 730 ~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 730 AYFLSGDYEECLELL 744 (794)
T ss_pred HHHHcCCHHHHHHHH
Confidence 455667777665543
No 450
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=38.37 E-value=92 Score=33.94 Aligned_cols=58 Identities=12% Similarity=-0.081 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 608 ~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai 665 (836)
+..+..+..-|.+.+|++..++++.++|=+.+.+..+-.+|..+|+--.|++.|++--
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3345567889999999999999999999999999999999999999999988777643
No 451
>PF12854 PPR_1: PPR repeat
Probab=38.09 E-value=59 Score=23.05 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINR 504 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~k 504 (836)
+...|..+-..+.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 457888999999999999999998875
No 452
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=37.52 E-value=48 Score=28.11 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+...|.-.-..|++++|+.+|.+|++.
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3555666677778999999999888764
No 453
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=37.05 E-value=6.2e+02 Score=29.46 Aligned_cols=231 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCch
Q 003249 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL-TLSPDYR 546 (836)
Q Consensus 468 ~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al-~l~P~~~ 546 (836)
+++++.--|--++.|+.-..-+..-++-+.|+....++++..|. .....+..|..-.|-++--.+|++.+ .|...+.
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps--L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys 368 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS--LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYS 368 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHh
Q ss_pred hhhhhHHHHH------HHHHHHHHhhhHhHHHH-HHhhhhccCcccccchHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Q 003249 547 MFEGRVAASQ------LHMLVREHIDNWTIADC-WLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLYFRQSLLLLRLN 618 (836)
Q Consensus 547 ~~~~~~~~~~------~~~~l~~~~~~~~~a~~-~~~~~~~~~~~~~~~aL~~~~~al~~~-P~~~~~~~~~gl~l~~l~ 618 (836)
+.-...+... ..+++.....++.-+-| ++....+...+..+ -..+-++-..- -..-..-+.--+-+...|
T Consensus 369 ~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aa--R~~F~k~rk~~~~~h~vyi~~A~~E~~~~~ 446 (660)
T COG5107 369 MGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAA--RKLFIKLRKEGIVGHHVYIYCAFIEYYATG 446 (660)
T ss_pred hhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH--HHHHHHHhccCCCCcceeeeHHHHHHHhcC
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHH
Q 003249 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 698 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l 698 (836)
++.-|-..|+..+...|+++-.-+..=.-+...++-+.|.+.|+++++- ++..
T Consensus 447 d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r---------------------------~~~~ 499 (660)
T COG5107 447 DRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER---------------------------LEKT 499 (660)
T ss_pred CcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH---------------------------HHHh
Q ss_pred HHHhcCCccccchHHHHHHHHHHHHhcCCHHH
Q 003249 699 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDL 730 (836)
Q Consensus 699 ~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~de 730 (836)
++-+++.+.+..-.-+-++.++|.-..++-+
T Consensus 500 -q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 500 -QLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred -hhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
No 454
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=36.95 E-value=73 Score=21.92 Aligned_cols=26 Identities=31% Similarity=0.225 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHh
Q 003249 466 EDLDKATALDPTLSYPYMYRASSLMT 491 (836)
Q Consensus 466 ~d~~kAi~ldP~~~~ay~~rg~~l~~ 491 (836)
....++|..+|.+..+|.+|--++..
T Consensus 4 ~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 4 EFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcccccHHHHHHHHHHH
Confidence 34567777788888888777666543
No 455
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=36.61 E-value=4.9e+02 Score=26.70 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-----cCC--HHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCC
Q 003249 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD-----TSH--CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~-----~G~--~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~ 689 (836)
.+.+..|++.+..|-. -+++.+..+.|.++.. .++ .++|.+.+.+|..++-...-|++-+.-+...
T Consensus 86 ~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~----- 158 (248)
T KOG4014|consen 86 DASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGK----- 158 (248)
T ss_pred ccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccc-----
Confidence 3557788888888877 5678888888988763 233 6789999999998875554444433322210
Q ss_pred ChhHHHHHHHHHhcC-CccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHHHHh
Q 003249 690 CSSTVVSLLEDALKC-PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFL 756 (836)
Q Consensus 690 ~~~~~i~~l~~Al~~-~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~ 756 (836)
+++... |+.. .+. .+...+.-+.+.+.|...-.+|-++++..|-.|+.+.|.+
T Consensus 159 ---------~k~~t~ap~~g--~p~---~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMykl 212 (248)
T KOG4014|consen 159 ---------EKFKTNAPGEG--KPL---DRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMYKL 212 (248)
T ss_pred ---------hhhcccCCCCC--CCc---chhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHc
Confidence 111111 1000 011 1233344456789999999999999999999999887754
No 456
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=36.56 E-value=50 Score=28.14 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+...|.-.-..|++++|+.+|.+|++.
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666667778888888888887764
No 457
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.58 E-value=2e+02 Score=36.98 Aligned_cols=138 Identities=15% Similarity=0.130 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--------hcCCH----HHHHHHHHHHHhcccc
Q 003249 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY--------DTSHC----EEGLRKAEESIQMKRS 670 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~--------~~G~~----eeAl~~~~~Ai~l~p~ 670 (836)
+..-.|-+|.+|+..|...+|+++|.+|..--...- ++ +-.++. ..|+- ..|+.+|.+++++-
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL--~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rll-- 993 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-AL--RKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLL-- 993 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HH--HHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHH--
Confidence 456678888899999999999999999876443332 33 223333 22321 23566677766541
Q ss_pred hHHHHHHHHHhhccccCCCChhHHHHHHHHHhcC-CccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc-hhHHh
Q 003249 671 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC-PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-TRAHQ 748 (836)
Q Consensus 671 ~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~-~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~-~~A~~ 748 (836)
+ ..+.++.++++-..||+. +++++..+..+++.=+-..++|.+-+|....-+-=...- -.-..
T Consensus 994 ------------e---~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLR 1058 (1480)
T KOG4521|consen 994 ------------E---EHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLR 1058 (1480)
T ss_pred ------------H---HhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHH
Confidence 1 123455667777777765 444555667777777888888888877654332211100 02334
Q ss_pred hHHHHHHhcCCH
Q 003249 749 GLARVHFLKNNK 760 (836)
Q Consensus 749 ~la~~~~~~g~~ 760 (836)
.+-.+++..|..
T Consensus 1059 qlvivLfecg~l 1070 (1480)
T KOG4521|consen 1059 QLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHHHhccch
Confidence 455566666664
No 458
>PF13041 PPR_2: PPR repeat family
Probab=34.49 E-value=1.3e+02 Score=22.92 Aligned_cols=38 Identities=16% Similarity=0.014 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHH
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRILGF--KLALECLE 516 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai~l--~P~~~~~~ 516 (836)
...|..+-..+.+.|++++|+..|++..+. .|+...|.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 456777777888888888888888888875 44444443
No 459
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.26 E-value=3.6e+02 Score=32.36 Aligned_cols=54 Identities=24% Similarity=0.425 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCC----------ch------------hHHhhHHH-HHHhcCCHHHHHHH
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALKIR----------HT------------RAHQGLAR-VHFLKNNKTTAYEE 766 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~l~----------~~------------~A~~~la~-~~~~~g~~~~A~~~ 766 (836)
.-|..||.+....|++..|-+|+.+|-.+. .. .-+.|+|- +++..|++++.++.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHH
Confidence 569999999999999999999999996642 11 11244554 67777888776643
No 460
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.85 E-value=1.2e+02 Score=30.65 Aligned_cols=48 Identities=13% Similarity=-0.049 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 003249 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p 669 (836)
+..++..++.++..| ++..+.+.+.++..+|+.+||-...+++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 334455566666666 577777788888888888888888888887777
No 461
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=32.25 E-value=96 Score=30.11 Aligned_cols=52 Identities=12% Similarity=-0.098 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEE 656 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~ee 656 (836)
..-..++......|++.-|++..+.++..+|++.++...+..+|..+|.-.+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3344445555666777777777777777777777777666666666554443
No 462
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=32.22 E-value=73 Score=38.91 Aligned_cols=119 Identities=19% Similarity=0.172 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh--hhhhHHHHHHHHHHHHHhhhHhHHHH
Q 003249 496 EAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM--FEGRVAASQLHMLVREHIDNWTIADC 573 (836)
Q Consensus 496 ~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~--~~~~~~~~~~~~~l~~~~~~~~~a~~ 573 (836)
+++.....++.++. .-|..++..++|.+|.--|..++.+-|.... ++.+ -.++-|
T Consensus 44 ~di~v~l~ra~~~~-------~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~----------------~~~~s~ 100 (748)
T KOG4151|consen 44 EDIEVFLSRALELK-------EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLR----------------SNQASC 100 (748)
T ss_pred cchHHHHHHHHHHH-------hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHH----------------HHHHHH
Confidence 45555566665432 2367788899999999999999999995421 1111 122333
Q ss_pred HHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 003249 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERL 641 (836)
Q Consensus 574 ~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal 641 (836)
.+++. ..+...++..-.-++...|.-..+.+.|+..|..+++.+-|++++.-.....|+..++.
T Consensus 101 ~m~~~----l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 101 YMQLG----LGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred HhhcC----ccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 33321 11111233344556777888888888888888888888888888888888888886553
No 463
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=32.02 E-value=9.5e+02 Score=28.70 Aligned_cols=184 Identities=17% Similarity=0.107 Sum_probs=115.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcc-cchHHHHHHHHHhhccccCCCC
Q 003249 626 SLQLARQHAASDHERLVYEGWILYDTSH--------------CEEGLRKAEESIQMK-RSFEAFFLKAYALADSSQDSSC 690 (836)
Q Consensus 626 ~~~~Al~l~P~~~eal~~~G~il~~~G~--------------~eeAl~~~~~Ai~l~-p~~~a~~~~a~aL~~~~l~~~~ 690 (836)
.|++++..-+-.++.|+--..-+...++ -+||...|+++|.-- ..+.-.|.......+...+...
T Consensus 267 ayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 267 AYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch
Confidence 4777888888888888877776666666 788889999998643 2222222222222222233334
Q ss_pred hhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHH---HHhcCCHHHHHHHH
Q 003249 691 SSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARV---HFLKNNKTTAYEEM 767 (836)
Q Consensus 691 ~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~---~~~~g~~~~A~~~~ 767 (836)
.+.+...+++++......+ -.+|.++=+.-....=...|...|.+|=+.....-|...+.+ |+-.++++-|..-|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~--tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL--TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC--ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHH
Confidence 5556666777776655544 245666666556666688899999999887544434444443 45578888888887
Q ss_pred HHHHHhcCCCHHH---HHH-HHHccCHHHHHHHHHHhHhc--CCCCcccc
Q 003249 768 TKLIKKARNNASA---YEK-RSEYCDRELTRADLEMVTQL--DPLRVYPY 811 (836)
Q Consensus 768 ~kaie~~p~~a~A---y~~-r~~~~~~~~A~~D~~~Ai~l--~P~~~~~y 811 (836)
+--++.-+|.+.- |.- ++.+++-.-|..-|++++.- .|+.....
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~I 474 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEI 474 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHH
Confidence 7777776665432 221 36667777777777777654 55544433
No 464
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=31.88 E-value=1.6e+02 Score=28.62 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCC
Q 003249 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSS 689 (836)
Q Consensus 636 ~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~ 689 (836)
..++....++.-.++.|++.-|+...+.++..+|++ ++...++.++...+-..+
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 456777888888999999999999999999999997 677788777765553333
No 465
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=31.79 E-value=1.8e+02 Score=27.72 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=39.5
Q ss_pred EEEE-eCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcC
Q 003249 184 VVFR-IHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSL 247 (836)
Q Consensus 184 V~~~-v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l 247 (836)
|.+. .+|+.|...+. .|-+|-..+.|+.. +.++. -.|.++ +|+..+|+.+++|+-..+-
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d-~~~~n-~p~p~p--nVrSsvl~kv~ew~ehh~~ 63 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCD-STACN-YPIPAP--NVRSSVLMKVQEWMEHHTS 63 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhcc-ccccC-CCCccc--chhHHHHHHHHHHHHhccc
Confidence 4443 36777777765 46777778887763 22333 234455 6999999999999976543
No 466
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=31.53 E-value=1.1e+02 Score=21.04 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 003249 624 MRSLQLARQHAASDHERLVYEGWILYD 650 (836)
Q Consensus 624 l~~~~~Al~l~P~~~eal~~~G~il~~ 650 (836)
++....++..+|.+..+|..|-+++..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 445566677777777777777766654
No 467
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=31.50 E-value=1.3e+02 Score=23.04 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 717 NLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 717 nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
+++.+|.+.|+.+.|.+..++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 455566666666666666666654
No 468
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=31.30 E-value=62 Score=21.41 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
+|+.+=+.|.+.|++++|.+.|++-.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 467777888899999999988887543
No 469
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.26 E-value=46 Score=32.43 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=13.7
Q ss_pred EEEEeCCeEEe-hhHHH
Q 003249 184 VVFRIHEEKIE-CDRQK 199 (836)
Q Consensus 184 V~~~v~~~~~~-aHr~v 199 (836)
|+|.|+|+.|| +||+|
T Consensus 84 vVf~vegR~IPiVHRvi 100 (180)
T KOG3342|consen 84 VVFKVEGREIPIVHRVI 100 (180)
T ss_pred EEEEECCccCchhHHHH
Confidence 67899999999 57776
No 470
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=30.95 E-value=61 Score=27.85 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 715 LNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 715 ~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+...|.-.-..|+|++|+.+|.+||+.
T Consensus 9 l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 9 LIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444555568899999999888875
No 471
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=30.41 E-value=9.9e+02 Score=28.39 Aligned_cols=179 Identities=12% Similarity=0.017 Sum_probs=98.0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCch
Q 003249 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLS-PDYR 546 (836)
Q Consensus 468 ~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~-P~~~ 546 (836)
+++.++. ..+-.+|+.++.+|.+. .-+.=...+++.++.+-+.-....--..+.++++.+.|...|.+|+.-- |.-
T Consensus 89 c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~- 165 (711)
T COG1747 89 CTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIKKSKAAEFFGKALYRFIPRR- 165 (711)
T ss_pred HHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchh-
Confidence 3344443 24456777788888777 5566677788888777654322211223455588888888888887532 111
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCC--CCHHHHHHHH-HHHHHcCCHHHH
Q 003249 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA--PKGVLYFRQS-LLLLRLNCPEAA 623 (836)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P--~~~~~~~~~g-l~l~~l~~~~eA 623 (836)
.+.+. .+- |.++-+.- .+|.+..-...+-++-+- +.+...+..- .-|....++++|
T Consensus 166 ---q~~~i----------~ev------WeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ea 224 (711)
T COG1747 166 ---QNAAI----------KEV------WEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEA 224 (711)
T ss_pred ---hhhhH----------HHH------HHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHH
Confidence 00010 111 21211110 111111111111122111 1112222222 223456789999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHhcccc
Q 003249 624 MRSLQLARQHAASDHERLVYEGWILYD--------------------TSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 624 l~~~~~Al~l~P~~~eal~~~G~il~~--------------------~G~~eeAl~~~~~Ai~l~p~ 670 (836)
++.+...++++..|+.|.-++-.-+.+ -.++-+|+-+|++-+..+.+
T Consensus 225 i~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 225 IRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred HHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 999999999999999887776666666 55677888888888876544
No 472
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=30.39 E-value=90 Score=26.43 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~ 411 (836)
++|..+...|...-+.|++++|+.+|..|++
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455556666667777778888887777765
No 473
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.51 E-value=2.7e+02 Score=34.21 Aligned_cols=133 Identities=13% Similarity=0.045 Sum_probs=80.3
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhcccc
Q 003249 617 LNCPEAAMRSLQLARQH-AASDHERLVYEGWILY---------DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQ 686 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l-~P~~~eal~~~G~il~---------~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l 686 (836)
-|+-++|+...-.+++. .|-.++.|..-|.||. +.+..+.|++.|++|++..|.-.+--+.|..|-..|-
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhh
Confidence 45667777777777764 3445667777788865 5688899999999999999976433333433333333
Q ss_pred CCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHHHHhcCCHHHHHHH
Q 003249 687 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEE 766 (836)
Q Consensus 687 ~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~~g~~~~A~~~ 766 (836)
.-+++.. ....=.-|++.+.+.|.++.--++++-|.-+. +-.+.+++..|+..
T Consensus 336 ~Fens~E-----------------lq~IgmkLn~LlgrKG~leklq~YWdV~~y~~----------asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 336 HFENSLE-----------------LQQIGMKLNSLLGRKGALEKLQEYWDVATYFE----------ASVLANDYQKAIQA 388 (1226)
T ss_pred hccchHH-----------------HHHHHHHHHHHhhccchHHHHHHHHhHHHhhh----------hhhhccCHHHHHHH
Confidence 3332221 11233456667777777777666666554331 22234566666666
Q ss_pred HHHHHHhcCC
Q 003249 767 MTKLIKKARN 776 (836)
Q Consensus 767 ~~kaie~~p~ 776 (836)
-.+..+++|-
T Consensus 389 ae~mfKLk~P 398 (1226)
T KOG4279|consen 389 AEMMFKLKPP 398 (1226)
T ss_pred HHHHhccCCc
Confidence 6666666554
No 474
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=28.21 E-value=99 Score=26.30 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~ 411 (836)
++..+...|.-.-..|+|++|+.+|.+|++
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666667777788888887777765
No 475
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=28.07 E-value=1e+02 Score=26.43 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~ 411 (836)
++|..+...|.-.-..|+|++|..+|..+|+
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3556666667777777888888888877776
No 476
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=28.02 E-value=1.5e+02 Score=24.37 Aligned_cols=52 Identities=25% Similarity=0.467 Sum_probs=39.5
Q ss_pred CCC-CchhHHHHHHHHHHHHhcCCcccchhhHHHHHHhh--hccchHHHHHHHHHHhhh
Q 003249 57 PNY-KPVDYVEVLAQIHEELELCPLQERSSLYLLQFQVF--KGLGEAKLMRRSLRKAWQ 112 (836)
Q Consensus 57 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~r~l~~a~~ 112 (836)
|.| .|=|+-|.|-..|+.|.. ++|...--+.-++ -=+||...+|.+++.|++
T Consensus 5 pnl~~pD~fY~~Li~aH~gLs~----e~S~~lnArLiLlLANhIGD~~vL~eAi~~Ar~ 59 (60)
T PF10932_consen 5 PNLADPDDFYEALIEAHRGLSD----EQSAALNARLILLLANHIGDRAVLREAIAAARR 59 (60)
T ss_pred CCCCChhHHHHHHHHHHhCCCH----HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 444 488999999999999854 5565555554444 348999999999999975
No 477
>PF13041 PPR_2: PPR repeat family
Probab=27.78 E-value=2.3e+02 Score=21.46 Aligned_cols=31 Identities=13% Similarity=-0.131 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 638 ~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
.-.|+.+=..+.+.|++++|++.|++..+..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 4456666677888899999999998888643
No 478
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=27.39 E-value=4.6e+02 Score=29.19 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=59.6
Q ss_pred hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHHHHHHHHhcCC--CChHHHHHHHHHHHhcC
Q 003249 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP--TLSYPYMYRASSLMTKQ 493 (836)
Q Consensus 416 ~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d~~kAi~ldP--~~~~ay~~rg~~l~~~g 493 (836)
.++...|.-|.+.|+.+.|.+.+.+. |++++.+-- +-...-..+|..+.+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t--------------------------~~ktvs~g~kiDVvf~~iRlglfy~D~~ 158 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKT--------------------------YEKTVSLGHKIDVVFYKIRLGLFYLDHD 158 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH--------------------------HHHHhhcccchhhHHHHHHHHHhhccHH
Confidence 46777888889999999888887655 333333322 22345567888888888
Q ss_pred CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 494 NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 494 ~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
=..+-|+--+..|+-.-+-+ -|-....-+|-|--|+++|..|-.
T Consensus 159 lV~~~iekak~liE~GgDWe---RrNRlKvY~Gly~msvR~Fk~Aa~ 202 (393)
T KOG0687|consen 159 LVTESIEKAKSLIEEGGDWE---RRNRLKVYQGLYCMSVRNFKEAAD 202 (393)
T ss_pred HHHHHHHHHHHHHHhCCChh---hhhhHHHHHHHHHHHHHhHHHHHH
Confidence 88888888888887665522 122222223444455555554433
No 479
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=27.24 E-value=3.8e+02 Score=26.03 Aligned_cols=63 Identities=13% Similarity=0.033 Sum_probs=40.1
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 604 GVLYFRQSLL-LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 604 ~~~~~~~gl~-l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
..-|...++- +...|+-+.=-+.++...+-+..+|+.++.+|.+|-+.|+..+|-+..++|.+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3456666663 44555555444555555556778899999999999999999999998888875
No 480
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=27.12 E-value=1.1e+02 Score=25.78 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~ 411 (836)
.+..+...|.-.-..|+|++|+.+|..|++
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555666667777888888888887766
No 481
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.51 E-value=2.5e+02 Score=29.77 Aligned_cols=76 Identities=17% Similarity=0.067 Sum_probs=51.0
Q ss_pred ChhHHHHHHHHHhcCCccccc---hHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-C-------chhHHhhHHHHHHhcC
Q 003249 690 CSSTVVSLLEDALKCPSDRLR---KGQALNNLGSVYVDCGQLDLAADCYSNALKI-R-------HTRAHQGLARVHFLKN 758 (836)
Q Consensus 690 ~~~~~i~~l~~Al~~~~~~~~---~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l-~-------~~~A~~~la~~~~~~g 758 (836)
.+...|+++++|.+.....-. ....-..+|..|...|++++|+..|+.+... . -......+-.+....|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 344455666666554433221 1245568999999999999999999999654 1 1245667777888888
Q ss_pred CHHHHHH
Q 003249 759 NKTTAYE 765 (836)
Q Consensus 759 ~~~~A~~ 765 (836)
+.+..+.
T Consensus 233 ~~~~~l~ 239 (247)
T PF11817_consen 233 DVEDYLT 239 (247)
T ss_pred CHHHHHH
Confidence 8776653
No 482
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.51 E-value=1.3e+03 Score=28.34 Aligned_cols=50 Identities=8% Similarity=-0.027 Sum_probs=38.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 614 l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
..+.++|.+|.+..++--+.-|+ .|+..|.-+.+..+|+||-+.|-+|-+
T Consensus 783 Hve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred eeecccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 44678888888877776666554 677778888899999999888877764
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.33 E-value=6.8e+02 Score=28.53 Aligned_cols=54 Identities=15% Similarity=0.034 Sum_probs=41.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 003249 610 QSLLLLRLNCPEAAMRSLQLARQHAASD-----HER--LVYEGWILYDTSHCEEGLRKAEE 663 (836)
Q Consensus 610 ~gl~l~~l~~~~eAl~~~~~Al~l~P~~-----~ea--l~~~G~il~~~G~~eeAl~~~~~ 663 (836)
++..+.+.++|..|.+.|+.+.+..++. .+. ..-+|..+-+.-++++|++.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4446788999999999999999875432 223 34455566699999999999986
No 484
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=26.29 E-value=1.3e+02 Score=29.93 Aligned_cols=91 Identities=11% Similarity=-0.036 Sum_probs=65.6
Q ss_pred cEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcC----CcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHHHHH
Q 003249 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMES----LCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLLLEI 258 (836)
Q Consensus 183 DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es----~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v~~l 258 (836)
=|-|-|||..|-.-|.-|.--+.-|..-|...-.+. ...---+- +=+|.-|--+|+|+..|++. ++.-.-..+
T Consensus 22 wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlI--DRDP~~FgpvLNylRhgklv-l~~l~eeGv 98 (210)
T KOG2715|consen 22 WVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLI--DRDPFYFGPVLNYLRHGKLV-LNKLSEEGV 98 (210)
T ss_pred EEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEe--ccCcchHHHHHHHHhcchhh-hhhhhhhcc
Confidence 377888999999999999888877766665432221 11122233 26789999999999999998 877444568
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 003249 259 LIFANKFCCERLKDACDR 276 (836)
Q Consensus 259 L~aA~~~c~~~L~~~c~~ 276 (836)
|.-|+++-...|.+.+..
T Consensus 99 L~EAefyn~~~li~likd 116 (210)
T KOG2715|consen 99 LEEAEFYNDPSLIQLIKD 116 (210)
T ss_pred chhhhccCChHHHHHHHH
Confidence 888999877777766544
No 485
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=25.25 E-value=20 Score=31.49 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=15.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 003249 257 EILIFANKFCCERLKDACDRKLA 279 (836)
Q Consensus 257 ~lL~aA~~~c~~~L~~~c~~~l~ 279 (836)
+++.+|+.+.+..|...|...++
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~ 25 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFIL 25 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHH
Confidence 45667777777777777766543
No 486
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=24.87 E-value=1.6e+02 Score=19.42 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003249 758 NNKTTAYEEMTKLIKKARNNASAYEKR 784 (836)
Q Consensus 758 g~~~~A~~~~~kaie~~p~~a~Ay~~r 784 (836)
|+.+.|-.-|+++++..|++...|..-
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 345566666677776667666666543
No 487
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=24.40 E-value=1.5e+02 Score=35.15 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhc-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 463 KRWEDLDKATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (836)
Q Consensus 463 eAi~d~~kAi~l-----dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai 506 (836)
.+++.|++||.. +-...++|.++|..+++.+++.+|+..+..|-
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 344445555543 34556778888888888888888887776663
No 488
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=24.33 E-value=1e+02 Score=26.74 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=30.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHhhcc--------cCCChHHHHHHHhccccc
Q 003249 290 ELMGYAIEENSPVLAVSCLQVFLRELP--------DCLNDERVVEIFSHANRQ 334 (836)
Q Consensus 290 ~~~~~a~~~~a~~L~~~c~~~~~~~~~--------~~l~~~~~~~ll~~~~~~ 334 (836)
.++.+|..++...|...|.+++.+|+. ..|+.+.+..++.+++..
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~ 55 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLN 55 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCC
Confidence 345566777777788888777766532 345557777778777653
No 489
>PHA02790 Kelch-like protein; Provisional
Probab=24.23 E-value=59 Score=38.13 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=33.4
Q ss_pred HHHHHHhhccCcCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 003249 235 LRIISDFSVTGSLNGVTPNLLLEILIFANKFCCERLKDACDRKLASL 281 (836)
Q Consensus 235 ~~~ll~f~Ytg~l~~~~~~~v~~lL~aA~~~c~~~L~~~c~~~l~~~ 281 (836)
...-.+|+-. .++++|..+++.+|+.|.|+.|+..+...++..
T Consensus 109 ~~~C~~fL~~----~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 109 IYTCINFILR----DFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred HHHHHHHHHh----hCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 3444466643 377899999999999999999999988876654
No 490
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=23.88 E-value=3.5e+02 Score=32.23 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=39.7
Q ss_pred HHHHHHHHHHH--hhccchHHHHHHHHHHHhc-------cchhhHhhHHHHHHhcCCHHHHHHHHHHh
Q 003249 383 LLAFHQLGCVR--LLRKEYDEAEHLFEAAVNA-------GHIYSIAGLARLGYIKGHKLWAYEKLNSV 441 (836)
Q Consensus 383 a~a~~~lG~~~--~~~g~y~eAi~~f~~Al~l-------~~~~a~~~la~~~~~~G~~~~A~~~~~~a 441 (836)
+.|+-++|.+- .....-..+++.|.+||.. .|.|.|..+|..+++.+++.+|+..+.++
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 45666666553 2222235678889999875 36678899999999999999999887664
No 491
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=23.75 E-value=1.1e+02 Score=20.50 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
.|+.+=..|.+.|++++|.+.|++-.+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356666778888888888888887654
No 492
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=23.62 E-value=1e+03 Score=26.66 Aligned_cols=31 Identities=13% Similarity=0.152 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhhccc---------hHHHHHHHHHHH
Q 003249 380 RQRLLAFHQLGCVRLLRKE---------YDEAEHLFEAAV 410 (836)
Q Consensus 380 ~~~a~a~~~lG~~~~~~g~---------y~eAi~~f~~Al 410 (836)
.+++..++|+|.++.+.+. +++|...|++|-
T Consensus 104 fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AA 143 (377)
T PF03097_consen 104 FEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAA 143 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 3455566666666544332 566777777663
No 493
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=23.52 E-value=4.3e+02 Score=25.96 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-c------CC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 480 YPYMYRASSLMTKQNVEAALAEINRILG-F------KL--ALECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 480 ~ay~~rg~~l~~~g~~~eAi~~~~kai~-l------~P--~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
......++-+.+.|+..+|...++-+=. + =| .......++..+...|++.+|-.-+..|+.
T Consensus 76 ~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 76 KAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 3455677788999999999998776521 1 12 124455688899999999999988887763
No 494
>PRK09687 putative lyase; Provisional
Probab=22.19 E-value=1e+03 Score=25.73 Aligned_cols=191 Identities=14% Similarity=0.030 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcccchHH
Q 003249 603 KGVLYFRQSLLLLRLNCP----EAAMRSLQLARQHAASDHERLVYEGWILYDTSH-----CEEGLRKAEESIQMKRSFEA 673 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~----~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~-----~eeAl~~~~~Ai~l~p~~~a 673 (836)
++.....-+.++..+|.. ++++..+...+..+|+ +.....-..++-..|. ..++++....++. +++...
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d-~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-D~~~~V 144 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS-ACVRASAINATGHRCKKNPLYSPKIVEQSQITAF-DKSTNV 144 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC-HHHHHHHHHHHhcccccccccchHHHHHHHHHhh-CCCHHH
Confidence 344444555566667663 4566666655444444 3333222222222221 1233443333332 234444
Q ss_pred HHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHH
Q 003249 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARV 753 (836)
Q Consensus 674 ~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~ 753 (836)
.+.-+.+|+..+ ...++..+-.+++.....++ ..|...||.. .-.-.+++....+++.=.+......-.+.
T Consensus 145 R~~a~~aLg~~~-----~~~ai~~L~~~L~d~~~~VR-~~A~~aLg~~---~~~~~~~~~~L~~~L~D~~~~VR~~A~~a 215 (280)
T PRK09687 145 RFAVAFALSVIN-----DEAAIPLLINLLKDPNGDVR-NWAAFALNSN---KYDNPDIREAFVAMLQDKNEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHhccC-----CHHHHHHHHHHhcCCCHHHH-HHHHHHHhcC---CCCCHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 555566665433 23456667777765444333 2445555544 11245788888888854333333333334
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHccCHHHHHHHHHHhHhcCCC
Q 003249 754 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL 806 (836)
Q Consensus 754 ~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~~~~~~A~~D~~~Ai~l~P~ 806 (836)
+-+.|+ ..|+...-+.++-..=...|....+++|+. .|+..+.+.+.-+|+
T Consensus 216 Lg~~~~-~~av~~Li~~L~~~~~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 216 LALRKD-KRVLSVLIKELKKGTVGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred HHccCC-hhHHHHHHHHHcCCchHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 444555 578887777776533233445556888885 699999999988874
No 495
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.88 E-value=9.1e+02 Score=31.50 Aligned_cols=27 Identities=19% Similarity=-0.038 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003249 515 LELRFCFFLALEDYQAALCDVQAILTL 541 (836)
Q Consensus 515 ~~~rg~~~~~lg~~~~Ai~d~~~al~l 541 (836)
-+.+|.+|...|+-.+|+.+|.+|..-
T Consensus 923 rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 923 RFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHhhheeeecCCchHHHHHHHHHHhhc
Confidence 345677889999999999999999864
No 496
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=20.99 E-value=1.6e+02 Score=25.25 Aligned_cols=30 Identities=17% Similarity=0.290 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~ 411 (836)
+|..+...+.-.-..|+|++|..+|..+|+
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444555555566666777777777777766
No 497
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=20.31 E-value=1.1e+03 Score=25.22 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-CC---ChHHHHHHHHHHHh-cCCHHHHHHHHHH
Q 003249 482 YMYRASSLMTKQNVEAALAEINRILGF-KL---ALECLELRFCFFLA-LEDYQAALCDVQA 537 (836)
Q Consensus 482 y~~rg~~l~~~g~~~eAi~~~~kai~l-~P---~~~~~~~rg~~~~~-lg~~~~Ai~d~~~ 537 (836)
..+++.+.-+.++|++.+....++++. +| +.+.-+.+..+|.. .|..-.+.+-...
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 356777888899999999999999987 55 34555556665543 5777777777665
Done!