Query 003249
Match_columns 836
No_of_seqs 573 out of 2843
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 18:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-40 4.4E-45 370.0 42.1 371 388-822 4-387 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 4.7E-37 1.6E-41 341.3 43.7 342 382-787 32-382 (388)
3 2xpi_A Anaphase-promoting comp 100.0 1.5E-34 5.3E-39 338.5 41.5 421 364-819 102-595 (597)
4 2gw1_A Mitochondrial precursor 100.0 1.8E-34 6.2E-39 329.9 39.1 373 381-818 4-493 (514)
5 3fp2_A TPR repeat-containing p 100.0 7.9E-33 2.7E-37 318.9 38.7 402 380-811 22-499 (537)
6 4g1t_A Interferon-induced prot 100.0 2.4E-33 8.1E-38 319.1 31.2 365 382-815 50-471 (472)
7 3ieg_A DNAJ homolog subfamily 100.0 1.1E-31 3.7E-36 290.8 42.3 324 383-822 3-354 (359)
8 2y4t_A DNAJ homolog subfamily 100.0 1.8E-31 6.1E-36 300.9 41.7 322 462-823 43-378 (450)
9 2xpi_A Anaphase-promoting comp 100.0 1.2E-31 4.2E-36 313.9 41.6 391 364-787 135-593 (597)
10 2y4t_A DNAJ homolog subfamily 100.0 3.5E-31 1.2E-35 298.6 43.3 339 381-809 24-416 (450)
11 2gw1_A Mitochondrial precursor 100.0 1.7E-31 5.8E-36 305.2 35.4 374 348-784 9-489 (514)
12 3fp2_A TPR repeat-containing p 100.0 4.2E-32 1.4E-36 312.8 28.3 387 415-824 25-478 (537)
13 4g1t_A Interferon-induced prot 100.0 1.5E-30 5.1E-35 296.0 36.6 358 416-824 52-446 (472)
14 2h6f_A Protein farnesyltransfe 100.0 5.6E-31 1.9E-35 295.5 20.4 257 470-825 88-370 (382)
15 3hym_B Cell division cycle pro 100.0 4E-29 1.4E-33 268.1 30.9 287 469-819 12-315 (330)
16 3ieg_A DNAJ homolog subfamily 100.0 2E-28 6.9E-33 265.0 36.0 277 462-824 20-322 (359)
17 1fch_A Peroxisomal targeting s 100.0 6.6E-29 2.3E-33 271.9 28.9 298 392-802 34-358 (368)
18 3hym_B Cell division cycle pro 100.0 3E-28 1E-32 261.2 33.4 284 384-786 23-312 (330)
19 1fch_A Peroxisomal targeting s 100.0 7.7E-29 2.6E-33 271.3 24.8 283 462-825 42-347 (368)
20 2h6f_A Protein farnesyltransfe 100.0 6.3E-29 2.2E-33 278.8 21.9 227 461-786 113-361 (382)
21 2xm6_A Protein corresponding t 100.0 3.5E-25 1.2E-29 255.2 43.7 364 382-787 38-449 (490)
22 4eqf_A PEX5-related protein; a 100.0 4.7E-27 1.6E-31 258.2 26.5 250 462-799 82-352 (365)
23 4eqf_A PEX5-related protein; a 100.0 1.5E-27 5.2E-32 262.1 22.2 266 464-825 46-344 (365)
24 2pl2_A Hypothetical conserved 99.9 2.6E-26 9E-31 236.1 22.7 196 476-770 2-211 (217)
25 3cv0_A Peroxisome targeting si 99.9 8.6E-26 2.9E-30 241.8 27.5 260 462-806 38-318 (327)
26 3u4t_A TPR repeat-containing p 99.9 1.2E-25 4.3E-30 235.4 25.2 228 462-787 20-264 (272)
27 3cv0_A Peroxisome targeting si 99.9 3.3E-25 1.1E-29 237.2 27.0 279 382-742 20-316 (327)
28 2xm6_A Protein corresponding t 99.9 3E-23 1E-27 239.1 43.7 378 400-820 24-452 (490)
29 2pl2_A Hypothetical conserved 99.9 3.4E-25 1.2E-29 227.8 23.4 179 462-739 22-212 (217)
30 3u4t_A TPR repeat-containing p 99.9 4.3E-25 1.5E-29 231.3 23.7 248 478-821 2-268 (272)
31 3uq3_A Heat shock protein STI1 99.9 2.3E-24 7.7E-29 222.6 25.7 227 381-742 3-237 (258)
32 3uq3_A Heat shock protein STI1 99.9 1.2E-24 4E-29 224.7 22.5 238 477-813 3-252 (258)
33 3sf4_A G-protein-signaling mod 99.9 5.8E-25 2E-29 242.7 17.7 314 383-806 9-380 (406)
34 4a1s_A PINS, partner of inscut 99.9 1.2E-24 4.2E-29 242.2 20.0 292 380-781 45-380 (411)
35 3vtx_A MAMA; tetratricopeptide 99.9 5.2E-24 1.8E-28 211.0 21.9 178 477-752 3-181 (184)
36 2ooe_A Cleavage stimulation fa 99.9 2.8E-22 9.7E-27 233.2 40.1 402 382-807 12-496 (530)
37 3sf4_A G-protein-signaling mod 99.9 4.8E-24 1.6E-28 235.4 22.3 277 462-824 26-363 (406)
38 3mkr_A Coatomer subunit epsilo 99.9 1.8E-22 6.1E-27 217.6 29.0 215 393-671 9-233 (291)
39 3hve_A Gigaxonin; ubiquitin, c 99.9 1.6E-24 5.3E-29 229.8 12.4 155 176-334 26-190 (256)
40 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.6E-23 1.2E-27 216.3 22.3 236 462-797 22-269 (275)
41 3i3n_A Kelch-like protein 11; 99.9 1.6E-24 5.3E-29 232.7 10.9 199 176-376 27-268 (279)
42 1ouv_A Conserved hypothetical 99.9 8E-22 2.7E-26 208.1 30.8 127 382-541 5-143 (273)
43 1ouv_A Conserved hypothetical 99.9 1.3E-21 4.5E-26 206.4 31.3 235 475-783 2-261 (273)
44 3e4b_A ALGK; tetratricopeptide 99.9 3.4E-22 1.2E-26 228.9 28.7 377 387-805 7-423 (452)
45 4i17_A Hypothetical protein; T 99.9 7.1E-22 2.4E-26 202.7 27.8 210 475-787 3-223 (228)
46 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.1E-22 1E-26 209.2 25.0 249 392-767 14-269 (275)
47 4a1s_A PINS, partner of inscut 99.9 1.2E-22 4E-27 226.2 22.9 260 462-807 65-376 (411)
48 3ro2_A PINS homolog, G-protein 99.9 1.2E-22 4E-27 216.6 21.9 264 462-777 22-336 (338)
49 2q7f_A YRRB protein; TPR, prot 99.9 1.9E-22 6.3E-27 206.9 22.1 213 478-788 22-237 (243)
50 4gyw_A UDP-N-acetylglucosamine 99.9 4.5E-23 1.5E-27 248.7 20.1 173 474-744 4-177 (723)
51 3mkr_A Coatomer subunit epsilo 99.9 2.6E-22 8.9E-27 216.4 23.6 264 462-797 16-288 (291)
52 4abn_A Tetratricopeptide repea 99.9 9.9E-23 3.4E-27 234.7 20.5 210 462-770 85-318 (474)
53 3vtx_A MAMA; tetratricopeptide 99.9 1E-21 3.6E-26 194.3 24.1 153 462-672 22-175 (184)
54 2ond_A Cleavage stimulation fa 99.9 6.1E-22 2.1E-26 214.2 24.4 246 462-812 33-301 (308)
55 2ho1_A Type 4 fimbrial biogene 99.9 1.8E-21 6.1E-26 201.6 25.4 216 471-784 28-249 (252)
56 3ro2_A PINS homolog, G-protein 99.9 3.8E-22 1.3E-26 212.6 20.9 275 383-743 5-334 (338)
57 2ooe_A Cleavage stimulation fa 99.9 1.9E-20 6.5E-25 217.8 36.8 394 364-778 30-497 (530)
58 4abn_A Tetratricopeptide repea 99.9 9E-22 3.1E-26 226.7 25.1 209 432-738 85-318 (474)
59 3dra_A Protein farnesyltransfe 99.9 2.3E-21 7.7E-26 210.4 25.7 226 462-785 50-300 (306)
60 2vq2_A PILW, putative fimbrial 99.9 5E-21 1.7E-25 193.1 26.4 213 474-784 3-222 (225)
61 3htm_A Speckle-type POZ protei 99.9 9.5E-23 3.2E-27 202.4 12.7 141 176-320 29-169 (172)
62 2q7f_A YRRB protein; TPR, prot 99.9 1.2E-21 4E-26 200.9 19.8 213 512-822 23-241 (243)
63 4i17_A Hypothetical protein; T 99.9 1.1E-20 3.7E-25 193.8 26.9 212 511-818 6-224 (228)
64 4gyw_A UDP-N-acetylglucosamine 99.9 3.6E-22 1.2E-26 240.8 18.3 169 599-807 4-178 (723)
65 3e4b_A ALGK; tetratricopeptide 99.9 1.1E-20 3.6E-25 216.4 25.9 347 419-807 7-391 (452)
66 2ond_A Cleavage stimulation fa 99.9 2.2E-20 7.6E-25 201.9 26.2 254 400-784 33-303 (308)
67 1qqe_A Vesicular transport pro 99.9 2.7E-21 9.4E-26 207.7 18.5 242 463-808 3-274 (292)
68 2ho1_A Type 4 fimbrial biogene 99.9 1.6E-19 5.4E-24 186.9 28.2 204 381-672 35-243 (252)
69 2vq2_A PILW, putative fimbrial 99.9 1.3E-19 4.5E-24 182.7 26.3 210 509-814 4-222 (225)
70 3qky_A Outer membrane assembly 99.9 3.9E-20 1.3E-24 194.2 22.7 224 471-806 7-257 (261)
71 2pzi_A Probable serine/threoni 99.9 6.3E-21 2.2E-25 229.5 18.8 154 459-671 405-567 (681)
72 3hqi_A Speckle-type POZ protei 99.8 3.5E-21 1.2E-25 209.9 13.7 141 176-320 169-309 (312)
73 3dra_A Protein farnesyltransfe 99.8 3E-20 1E-24 201.6 20.6 236 485-818 39-303 (306)
74 3dss_A Geranylgeranyl transfer 99.8 3E-19 1E-23 195.1 26.6 153 462-672 47-227 (331)
75 3urz_A Uncharacterized protein 99.8 3.6E-20 1.2E-24 188.9 17.9 67 478-544 3-86 (208)
76 1qqe_A Vesicular transport pro 99.8 5E-20 1.7E-24 197.9 19.0 197 462-745 54-273 (292)
77 3ulq_A Response regulator aspa 99.8 7.1E-19 2.4E-23 195.2 28.6 243 481-776 105-371 (383)
78 2vkp_A BTB/POZ domain-containi 99.8 7.9E-21 2.7E-25 174.2 10.6 101 176-280 3-107 (109)
79 3nf1_A KLC 1, kinesin light ch 99.8 1.3E-20 4.6E-25 199.8 13.2 250 475-806 23-310 (311)
80 2pzi_A Probable serine/threoni 99.8 3.3E-20 1.1E-24 223.3 18.0 187 473-728 388-584 (681)
81 3urz_A Uncharacterized protein 99.8 9.8E-20 3.3E-24 185.6 18.8 184 512-777 4-190 (208)
82 4eoz_A Speckle-type POZ protei 99.8 1.8E-21 6.3E-26 187.6 5.7 125 176-304 20-144 (145)
83 2if5_A Zinc finger and BTB dom 99.8 1.3E-20 4.6E-25 175.9 10.3 100 176-278 20-119 (120)
84 3ulq_A Response regulator aspa 99.8 1.5E-19 5.1E-24 200.7 20.5 242 384-742 104-369 (383)
85 3nf1_A KLC 1, kinesin light ch 99.8 9.5E-20 3.3E-24 193.2 17.8 267 380-776 24-310 (311)
86 1hz4_A MALT regulatory protein 99.8 3.7E-18 1.3E-22 188.1 30.6 324 381-821 12-366 (373)
87 3dss_A Geranylgeranyl transfer 99.8 2.3E-18 8E-23 188.1 26.4 254 490-818 40-319 (331)
88 1r29_A B-cell lymphoma 6 prote 99.8 4.6E-20 1.6E-24 174.1 10.7 100 176-279 24-124 (127)
89 3qky_A Outer membrane assembly 99.8 1.4E-18 4.7E-23 182.4 20.5 191 597-824 8-248 (261)
90 2ppi_A Gigaxonin; BTB domain, 99.8 4.5E-20 1.5E-24 178.2 8.0 99 176-277 42-142 (144)
91 1xi4_A Clathrin heavy chain; a 99.8 1.5E-16 5.1E-21 196.1 39.2 365 388-822 990-1415(1630)
92 3b84_A Zinc finger and BTB dom 99.8 7.5E-20 2.6E-24 170.7 7.2 97 176-279 19-115 (119)
93 3edt_B KLC 2, kinesin light ch 99.8 2.6E-18 9E-23 178.9 19.8 227 462-741 18-281 (283)
94 2z8h_A Transcription regulator 99.8 1E-19 3.6E-24 174.3 8.3 103 176-282 31-133 (138)
95 1buo_A POZ domain, protein (pr 99.8 3.1E-19 1.1E-23 167.0 10.7 97 176-280 23-119 (121)
96 4ga2_A E3 SUMO-protein ligase 99.8 4.8E-19 1.6E-23 171.3 11.3 145 448-653 3-149 (150)
97 3q15_A PSP28, response regulat 99.8 2.6E-17 8.9E-22 182.6 26.9 244 382-742 100-366 (378)
98 2vpk_A Myoneurin; transcriptio 99.8 3.5E-19 1.2E-23 165.3 9.7 98 176-278 17-114 (116)
99 3q7a_A Farnesyltransferase alp 99.8 3.8E-17 1.3E-21 179.3 27.3 249 462-746 71-337 (349)
100 1xi4_A Clathrin heavy chain; a 99.8 8.7E-16 3E-20 189.4 41.7 354 389-808 1055-1435(1630)
101 4ga2_A E3 SUMO-protein ligase 99.8 7.5E-19 2.6E-23 169.9 11.8 131 484-672 2-134 (150)
102 1hz4_A MALT regulatory protein 99.8 4.3E-17 1.5E-21 179.6 27.3 265 459-806 28-325 (373)
103 2yy9_A Zinc finger and BTB dom 99.8 1.9E-19 6.4E-24 171.9 6.9 100 176-282 20-119 (135)
104 4gco_A Protein STI-1; structur 99.8 2.9E-18 9.8E-23 161.1 14.3 121 470-648 4-125 (126)
105 3as5_A MAMA; tetratricopeptide 99.8 1.1E-17 3.9E-22 162.6 19.0 167 479-743 8-175 (186)
106 1dce_A Protein (RAB geranylger 99.8 6.4E-19 2.2E-23 207.3 11.5 185 462-744 46-270 (567)
107 2ihc_A Transcription regulator 99.8 4.9E-20 1.7E-24 173.3 1.3 98 176-277 24-121 (124)
108 3q15_A PSP28, response regulat 99.8 2.6E-17 8.9E-22 182.6 23.6 243 480-775 102-367 (378)
109 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.9E-17 6.6E-22 170.4 20.1 205 478-777 3-217 (225)
110 3ohu_A Transcription regulator 99.8 2.5E-19 8.4E-24 168.6 3.9 97 176-276 27-123 (125)
111 2q81_A MIZ-1 protein; BTB/POZ 99.7 6.7E-19 2.3E-23 164.3 6.6 95 176-278 22-116 (119)
112 2ifu_A Gamma-SNAP; membrane fu 99.7 5.4E-18 1.9E-22 183.3 14.3 234 462-806 8-266 (307)
113 3as5_A MAMA; tetratricopeptide 99.7 2.4E-17 8.1E-22 160.3 17.5 170 602-811 6-181 (186)
114 4gco_A Protein STI-1; structur 99.7 7.3E-18 2.5E-22 158.3 12.6 116 597-752 6-123 (126)
115 3q7a_A Farnesyltransferase alp 99.7 3.9E-17 1.3E-21 179.3 19.4 152 472-681 47-211 (349)
116 3edt_B KLC 2, kinesin light ch 99.7 2.9E-17 9.8E-22 171.0 16.7 233 490-804 12-282 (283)
117 3fkc_A Transcriptional regulat 99.7 5.6E-18 1.9E-22 157.3 10.0 90 176-272 26-115 (116)
118 3ga1_A Nucleus accumbens-assoc 99.7 6.5E-19 2.2E-23 166.7 3.3 98 176-279 28-125 (129)
119 3qou_A Protein YBBN; thioredox 99.7 5.5E-17 1.9E-21 174.0 18.2 170 475-740 113-283 (287)
120 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.5E-16 5.3E-21 163.6 20.7 169 462-671 21-217 (225)
121 3m5b_A Zinc finger and BTB dom 99.7 2.7E-18 9.3E-23 160.2 6.5 91 176-278 25-115 (119)
122 2ifu_A Gamma-SNAP; membrane fu 99.7 8.4E-17 2.9E-21 173.9 18.7 206 395-671 3-227 (307)
123 1p5q_A FKBP52, FK506-binding p 99.7 3.9E-19 1.3E-23 195.5 0.2 195 462-741 82-294 (336)
124 2r5s_A Uncharacterized protein 99.7 3.6E-17 1.2E-21 161.6 14.1 168 475-666 2-172 (176)
125 3gyz_A Chaperone protein IPGC; 99.7 2.7E-17 9.1E-22 160.0 11.6 117 592-748 24-140 (151)
126 1dce_A Protein (RAB geranylger 99.7 3.6E-17 1.2E-21 192.3 13.6 180 588-807 47-271 (567)
127 1p5q_A FKBP52, FK506-binding p 99.7 5.1E-18 1.8E-22 186.5 5.3 201 390-666 72-293 (336)
128 1b89_A Protein (clathrin heavy 99.7 2.3E-17 8E-22 185.2 10.7 330 370-808 20-362 (449)
129 2vsy_A XCC0866; transferase, g 99.7 3.3E-16 1.1E-20 183.7 19.5 159 460-676 4-167 (568)
130 2r5s_A Uncharacterized protein 99.7 1.1E-16 3.8E-21 158.0 13.1 160 605-772 7-172 (176)
131 3qou_A Protein YBBN; thioredox 99.7 7.7E-16 2.6E-20 165.0 19.0 147 462-666 134-283 (287)
132 3gyz_A Chaperone protein IPGC; 99.7 6.5E-17 2.2E-21 157.2 9.6 115 500-672 23-138 (151)
133 4f3v_A ESX-1 secretion system 99.7 5.5E-16 1.9E-20 165.1 16.0 222 485-785 13-248 (282)
134 2vsy_A XCC0866; transferase, g 99.7 7.3E-16 2.5E-20 180.8 17.5 158 588-785 7-169 (568)
135 3rjv_A Putative SEL1 repeat pr 99.7 4E-15 1.4E-19 152.1 20.7 187 462-753 3-209 (212)
136 4f3v_A ESX-1 secretion system 99.6 2.4E-16 8.3E-21 167.9 9.1 188 459-744 20-240 (282)
137 1b89_A Protein (clathrin heavy 99.6 2.2E-16 7.4E-21 177.4 8.4 306 391-823 11-343 (449)
138 1hh8_A P67PHOX, NCF-2, neutrop 99.6 6.6E-15 2.3E-19 148.3 17.4 154 604-808 6-177 (213)
139 2qfc_A PLCR protein; TPR, HTH, 99.6 1.5E-14 5.2E-19 154.7 20.6 182 474-741 70-266 (293)
140 3rjv_A Putative SEL1 repeat pr 99.6 2.2E-14 7.4E-19 146.6 20.7 181 496-778 3-202 (212)
141 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 1.7E-17 5.9E-22 190.2 -2.9 166 491-739 246-413 (457)
142 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1E-14 3.6E-19 146.8 17.8 133 479-671 6-154 (213)
143 2c2l_A CHIP, carboxy terminus 99.6 3.3E-15 1.1E-19 159.7 14.2 175 601-818 1-179 (281)
144 2hr2_A Hypothetical protein; a 99.6 1.6E-15 5.4E-20 147.7 10.5 113 513-671 12-135 (159)
145 2vgx_A Chaperone SYCD; alterna 99.6 2.8E-15 9.7E-20 144.5 12.0 115 468-640 10-125 (148)
146 2vgx_A Chaperone SYCD; alterna 99.6 4.5E-15 1.5E-19 143.1 13.1 113 592-744 9-121 (148)
147 2c2l_A CHIP, carboxy terminus 99.6 5.5E-15 1.9E-19 158.0 14.4 178 462-668 21-200 (281)
148 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2.5E-16 8.6E-21 180.5 3.7 142 461-660 250-407 (457)
149 4gcn_A Protein STI-1; structur 99.6 4.6E-15 1.6E-19 139.1 11.1 109 602-744 6-115 (127)
150 2hr2_A Hypothetical protein; a 99.6 4.7E-15 1.6E-19 144.4 11.3 102 604-745 11-135 (159)
151 2xcb_A PCRH, regulatory protei 99.6 5.1E-15 1.7E-19 140.9 10.3 123 467-647 6-129 (142)
152 2fo7_A Synthetic consensus TPR 99.6 1.1E-13 3.8E-18 126.4 18.5 133 480-670 2-135 (136)
153 2qfc_A PLCR protein; TPR, HTH, 99.6 1.1E-13 3.8E-18 148.0 20.9 177 513-774 76-267 (293)
154 3u3w_A Transcriptional activat 99.6 7.7E-14 2.6E-18 149.2 19.5 174 482-741 78-266 (293)
155 2xcb_A PCRH, regulatory protei 99.6 1E-14 3.5E-19 138.7 11.2 114 591-744 5-118 (142)
156 2fo7_A Synthetic consensus TPR 99.6 1.1E-13 3.8E-18 126.4 17.2 133 605-777 2-136 (136)
157 3upv_A Heat shock protein STI1 99.6 3.5E-14 1.2E-18 131.4 13.7 102 601-742 1-102 (126)
158 4gcn_A Protein STI-1; structur 99.5 2.9E-14 9.9E-19 133.6 12.9 112 477-640 6-118 (127)
159 3upv_A Heat shock protein STI1 99.5 6.1E-14 2.1E-18 129.7 14.8 116 476-649 1-123 (126)
160 1a17_A Serine/threonine protei 99.5 2.7E-13 9.3E-18 129.9 17.7 132 479-668 13-147 (166)
161 1zu2_A Mitochondrial import re 99.5 1E-14 3.5E-19 141.7 7.4 112 615-785 13-145 (158)
162 3sz7_A HSC70 cochaperone (SGT) 99.5 1.2E-13 4.1E-18 134.2 13.9 117 475-649 7-124 (164)
163 2e2e_A Formate-dependent nitri 99.5 8.2E-14 2.8E-18 136.7 12.7 126 616-781 22-152 (177)
164 2fbn_A 70 kDa peptidylprolyl i 99.5 3.4E-14 1.2E-18 142.6 9.7 152 478-671 3-155 (198)
165 1a17_A Serine/threonine protei 99.5 3.9E-13 1.3E-17 128.9 16.3 130 604-773 13-146 (166)
166 3sz7_A HSC70 cochaperone (SGT) 99.5 1.4E-13 4.8E-18 133.7 13.3 105 600-744 7-111 (164)
167 2fbn_A 70 kDa peptidylprolyl i 99.5 5E-14 1.7E-18 141.4 9.2 145 462-664 21-183 (198)
168 2lni_A Stress-induced-phosphop 99.5 3.7E-13 1.3E-17 123.7 14.3 120 600-759 12-133 (133)
169 2vyi_A SGTA protein; chaperone 99.5 3.5E-13 1.2E-17 122.9 13.8 126 472-655 5-131 (131)
170 3u3w_A Transcriptional activat 99.5 1.2E-12 4E-17 140.0 19.9 164 607-804 78-267 (293)
171 2lni_A Stress-induced-phosphop 99.5 5.3E-13 1.8E-17 122.7 14.6 121 475-653 12-133 (133)
172 3gw4_A Uncharacterized protein 99.5 3.1E-13 1E-17 134.3 13.7 166 489-741 2-176 (203)
173 1hxi_A PEX5, peroxisome target 99.5 2.8E-13 9.6E-18 125.8 12.1 100 606-745 19-118 (121)
174 3rkv_A Putative peptidylprolyl 99.4 3.3E-13 1.1E-17 130.8 12.1 69 604-672 63-131 (162)
175 2e2e_A Formate-dependent nitri 99.4 7.2E-13 2.5E-17 129.9 14.2 84 462-545 27-114 (177)
176 2vyi_A SGTA protein; chaperone 99.4 5.2E-13 1.8E-17 121.8 12.3 122 599-760 7-130 (131)
177 1zu2_A Mitochondrial import re 99.4 1.1E-13 3.8E-18 134.4 8.1 87 461-547 18-126 (158)
178 3q49_B STIP1 homology and U bo 99.4 8.1E-13 2.8E-17 123.1 13.6 107 598-744 3-109 (137)
179 3q49_B STIP1 homology and U bo 99.4 1.2E-12 4.2E-17 121.9 13.8 73 473-545 3-76 (137)
180 1hxi_A PEX5, peroxisome target 99.4 9.6E-13 3.3E-17 122.1 12.6 101 513-671 18-118 (121)
181 1wao_1 Serine/threonine protei 99.4 2.9E-14 1E-18 164.2 2.7 136 478-671 5-154 (477)
182 2if4_A ATFKBP42; FKBP-like, al 99.4 1.2E-13 4.2E-18 151.7 7.0 142 472-671 172-332 (338)
183 3rkv_A Putative peptidylprolyl 99.4 6.3E-13 2.2E-17 128.8 11.2 101 604-744 11-129 (162)
184 1wao_1 Serine/threonine protei 99.4 4.9E-14 1.7E-18 162.4 3.7 127 602-768 4-134 (477)
185 1na0_A Designed protein CTPR3; 99.4 8.5E-12 2.9E-16 112.6 17.1 121 474-652 3-125 (125)
186 1na0_A Designed protein CTPR3; 99.4 5.2E-12 1.8E-16 114.0 15.5 119 600-758 4-125 (125)
187 2if4_A ATFKBP42; FKBP-like, al 99.4 2.8E-13 9.6E-18 148.8 7.4 95 714-808 232-333 (338)
188 2dba_A Smooth muscle cell asso 99.4 1E-11 3.6E-16 116.4 17.1 121 472-650 21-145 (148)
189 2kck_A TPR repeat; tetratricop 99.4 1.9E-12 6.5E-17 115.0 11.1 106 599-744 1-109 (112)
190 1elw_A TPR1-domain of HOP; HOP 99.4 8.5E-12 2.9E-16 111.6 15.2 111 603-753 3-115 (118)
191 4b4t_Q 26S proteasome regulato 99.4 5.5E-12 1.9E-16 141.1 16.9 210 481-741 6-245 (434)
192 3ro3_A PINS homolog, G-protein 99.3 5.6E-12 1.9E-16 118.9 12.9 140 604-777 9-162 (164)
193 3gw4_A Uncharacterized protein 99.3 6.7E-12 2.3E-16 124.5 13.9 155 462-671 9-180 (203)
194 2dba_A Smooth muscle cell asso 99.3 9E-12 3.1E-16 116.8 14.0 72 599-670 23-97 (148)
195 1elw_A TPR1-domain of HOP; HOP 99.3 2.7E-11 9.3E-16 108.3 16.0 112 479-648 4-116 (118)
196 3ro3_A PINS homolog, G-protein 99.3 1.1E-11 3.8E-16 116.8 13.3 142 514-741 11-158 (164)
197 1ihg_A Cyclophilin 40; ppiase 99.3 1.2E-11 4E-16 137.8 15.0 123 479-659 223-362 (370)
198 4e6h_A MRNA 3'-END-processing 99.3 7E-09 2.4E-13 123.9 39.8 213 590-808 329-575 (679)
199 2xev_A YBGF; tetratricopeptide 99.3 2.8E-11 9.7E-16 111.3 14.5 65 481-545 4-72 (129)
200 2kck_A TPR repeat; tetratricop 99.3 2E-11 7E-16 108.2 12.8 65 606-670 42-109 (112)
201 1elr_A TPR2A-domain of HOP; HO 99.3 1.2E-11 4E-16 112.9 11.5 122 602-756 2-124 (131)
202 1ihg_A Cyclophilin 40; ppiase 99.3 6.7E-12 2.3E-16 139.7 11.8 117 513-671 224-340 (370)
203 2xev_A YBGF; tetratricopeptide 99.3 6.2E-11 2.1E-15 109.0 14.9 105 513-672 3-110 (129)
204 1elr_A TPR2A-domain of HOP; HO 99.3 2.7E-11 9.3E-16 110.4 12.2 125 476-652 1-126 (131)
205 3mv2_B Coatomer subunit epsilo 99.3 1.3E-10 4.5E-15 125.2 18.5 243 394-672 24-287 (310)
206 2ast_A S-phase kinase-associat 99.2 2E-11 6.9E-16 119.4 11.0 102 184-289 3-135 (159)
207 3mv2_B Coatomer subunit epsilo 99.2 4E-10 1.4E-14 121.4 21.8 187 498-783 85-292 (310)
208 3k9i_A BH0479 protein; putativ 99.2 1.4E-11 4.7E-16 112.8 8.2 32 609-640 66-97 (117)
209 4b4t_Q 26S proteasome regulato 99.2 7.3E-11 2.5E-15 131.9 14.8 188 605-826 5-227 (434)
210 3k9i_A BH0479 protein; putativ 99.2 2.6E-11 8.9E-16 111.0 7.0 89 459-547 4-96 (117)
211 2kat_A Uncharacterized protein 99.1 2.6E-10 8.9E-15 103.5 11.8 86 462-547 2-88 (115)
212 2l6j_A TPR repeat-containing p 99.1 3.5E-11 1.2E-15 107.4 5.3 101 603-737 3-103 (111)
213 4ajy_C Transcription elongatio 99.1 1.6E-10 5.4E-15 103.4 8.5 80 184-266 4-96 (97)
214 2l6j_A TPR repeat-containing p 99.1 1.1E-10 3.8E-15 104.1 5.5 57 606-662 40-102 (111)
215 4e6h_A MRNA 3'-END-processing 99.0 2.4E-07 8.4E-12 110.6 35.0 336 462-806 83-536 (679)
216 3ly7_A Transcriptional activat 99.0 5.4E-09 1.8E-13 114.7 18.2 148 515-677 199-349 (372)
217 2kat_A Uncharacterized protein 99.0 1.1E-09 3.8E-14 99.3 10.8 83 589-671 4-86 (115)
218 1na3_A Designed protein CTPR2; 99.0 1.4E-09 4.8E-14 93.2 10.8 71 601-671 6-76 (91)
219 3ma5_A Tetratricopeptide repea 99.0 1.2E-09 4.2E-14 97.2 8.8 73 599-671 2-74 (100)
220 3ma5_A Tetratricopeptide repea 98.9 2.9E-09 9.8E-14 94.8 9.6 74 474-547 2-76 (100)
221 3n71_A Histone lysine methyltr 98.9 5.4E-09 1.8E-13 120.4 13.7 134 609-774 314-465 (490)
222 2kc7_A BFR218_protein; tetratr 98.9 2.3E-09 7.9E-14 94.1 7.2 91 715-809 3-96 (99)
223 2kc7_A BFR218_protein; tetratr 98.9 2E-09 6.7E-14 94.6 6.3 65 607-671 3-68 (99)
224 1na3_A Designed protein CTPR2; 98.9 2E-08 6.9E-13 85.9 12.5 82 513-652 10-91 (91)
225 1klx_A Cysteine rich protein B 98.9 3E-08 1E-12 94.0 14.7 119 618-784 9-135 (138)
226 3ly7_A Transcriptional activat 98.8 1.2E-07 4.1E-12 104.0 17.3 146 382-547 195-345 (372)
227 3n71_A Histone lysine methyltr 98.7 3.1E-08 1.1E-12 114.0 12.5 140 519-740 316-463 (490)
228 1klx_A Cysteine rich protein B 98.7 2E-07 7E-12 88.2 14.8 113 397-544 9-129 (138)
229 1fs1_B SKP1, cyclin A/CDK2-ass 98.6 4.9E-08 1.7E-12 93.3 8.4 92 184-283 4-122 (141)
230 2uy1_A Cleavage stimulation fa 98.6 2.6E-05 8.7E-10 89.9 31.3 170 622-800 197-380 (493)
231 3qww_A SET and MYND domain-con 98.5 1.5E-07 5E-12 106.7 9.2 94 616-741 310-411 (433)
232 3u64_A Protein TP_0956; tetrat 98.5 2.6E-06 8.9E-11 90.0 17.2 83 589-671 182-273 (301)
233 2p1m_A SKP1-like protein 1A; F 98.5 3.7E-08 1.3E-12 96.2 1.9 100 184-290 6-135 (160)
234 3qww_A SET and MYND domain-con 98.5 7.8E-07 2.7E-11 100.7 13.1 100 649-780 309-423 (433)
235 3bee_A Putative YFRE protein; 98.4 8E-07 2.7E-11 78.5 10.1 72 600-671 2-76 (93)
236 3qwp_A SET and MYND domain-con 98.4 3.3E-06 1.1E-10 95.6 16.6 105 647-783 296-415 (429)
237 3qwp_A SET and MYND domain-con 98.4 8.2E-07 2.8E-11 100.5 11.5 96 614-741 297-400 (429)
238 2uy1_A Cleavage stimulation fa 98.4 0.00042 1.4E-08 79.7 33.7 215 496-772 196-412 (493)
239 3u64_A Protein TP_0956; tetrat 98.4 1.8E-05 6.2E-10 83.6 19.3 106 599-743 147-271 (301)
240 3bee_A Putative YFRE protein; 98.3 1.8E-06 6E-11 76.3 9.5 71 475-545 2-76 (93)
241 1pc2_A Mitochondria fission pr 98.2 4.6E-06 1.6E-10 80.1 10.3 87 462-548 15-107 (152)
242 1hv2_A Elongin C, ELC1; protei 98.2 5.3E-06 1.8E-10 74.1 9.0 78 183-265 5-97 (99)
243 1pc2_A Mitochondria fission pr 98.1 9.3E-06 3.2E-10 77.9 9.5 80 592-671 20-104 (152)
244 2fnj_C Transcription elongatio 98.1 5.2E-06 1.8E-10 73.7 6.6 78 184-265 3-94 (96)
245 2v5f_A Prolyl 4-hydroxylase su 98.0 3.6E-05 1.2E-09 68.8 10.3 75 712-786 5-88 (104)
246 2v5f_A Prolyl 4-hydroxylase su 98.0 3E-05 1E-09 69.4 9.7 74 478-551 4-85 (104)
247 3v7d_A Suppressor of kinetocho 97.7 0.00016 5.6E-09 70.8 11.3 97 183-283 8-134 (169)
248 3drz_A BTB/POZ domain-containi 97.7 0.00015 5.2E-09 65.5 9.5 93 183-279 7-105 (107)
249 1vcb_B Protein (elongin C); tu 97.5 0.00026 8.8E-09 64.5 7.8 79 183-265 18-110 (112)
250 1nzn_A CGI-135 protein, fissio 97.2 0.0015 5.1E-08 60.5 10.2 86 463-548 19-110 (126)
251 4g26_A Pentatricopeptide repea 97.0 0.053 1.8E-06 62.2 22.5 99 603-740 104-203 (501)
252 1nzn_A CGI-135 protein, fissio 96.8 0.0039 1.3E-07 57.7 9.0 80 592-671 23-107 (126)
253 4g26_A Pentatricopeptide repea 96.6 0.16 5.4E-06 58.2 22.1 59 479-537 105-165 (501)
254 3ffl_A Anaphase-promoting comp 96.3 0.016 5.4E-07 56.0 9.5 135 604-754 20-165 (167)
255 3drx_A BTB/POZ domain-containi 95.9 0.0096 3.3E-07 59.4 6.0 92 184-279 14-111 (202)
256 1y8m_A FIS1; mitochondria, unk 95.3 0.15 5.1E-06 48.0 11.6 73 475-547 35-112 (144)
257 3o48_A Mitochondria fission 1 94.9 0.098 3.4E-06 48.6 9.1 70 478-547 39-113 (134)
258 3ffl_A Anaphase-promoting comp 94.9 0.087 3E-06 50.8 8.9 98 640-768 22-146 (167)
259 4h7y_A Dual specificity protei 94.9 0.12 4E-06 49.1 9.5 117 632-781 7-131 (161)
260 1y8m_A FIS1; mitochondria, unk 94.7 0.22 7.5E-06 46.8 11.0 71 601-671 36-110 (144)
261 4gns_B Protein CSD3, chitin bi 94.4 0.27 9.4E-06 58.8 13.7 60 605-664 338-397 (754)
262 4h7y_A Dual specificity protei 94.3 0.57 1.9E-05 44.5 12.7 57 615-671 71-127 (161)
263 3o48_A Mitochondria fission 1 94.1 0.16 5.6E-06 47.1 8.4 69 603-671 39-111 (134)
264 3txn_A 26S proteasome regulato 94.0 0.97 3.3E-05 49.9 16.0 99 609-740 104-209 (394)
265 3kvt_A Potassium channel prote 93.0 0.074 2.5E-06 48.4 4.1 82 184-269 7-91 (115)
266 3kae_A CDC27, possible protein 92.9 1.3 4.4E-05 42.7 12.6 74 601-674 59-150 (242)
267 1zbp_A Hypothetical protein VP 92.7 1.3 4.4E-05 46.1 13.3 60 488-547 6-66 (273)
268 3mkq_A Coatomer beta'-subunit; 92.5 9 0.00031 45.3 23.0 41 490-534 610-651 (814)
269 2ff4_A Probable regulatory pro 91.9 2.8 9.4E-05 46.1 16.1 59 608-666 175-233 (388)
270 3mkq_A Coatomer beta'-subunit; 91.8 3.8 0.00013 48.6 18.5 98 616-740 611-709 (814)
271 2ff4_A Probable regulatory pro 91.4 2.9 9.8E-05 46.0 15.5 105 388-506 120-232 (388)
272 1s1g_A Potassium voltage-gated 91.1 0.2 6.9E-06 46.1 4.7 81 183-270 14-99 (124)
273 2nz0_B Potassium voltage-gated 90.8 0.22 7.6E-06 46.8 4.8 81 183-270 36-121 (140)
274 1zbp_A Hypothetical protein VP 90.8 2.3 8E-05 44.1 12.8 112 613-743 6-131 (273)
275 1t1d_A Protein (potassium chan 90.6 0.11 3.8E-06 46.0 2.4 82 184-269 3-88 (100)
276 3txn_A 26S proteasome regulato 89.6 9.3 0.00032 42.0 17.4 138 383-542 19-169 (394)
277 1ya0_A SMG-7 transcript varian 89.6 1.2 4.1E-05 50.8 10.4 63 606-668 154-216 (497)
278 1nn7_A Potassium channel KV4.2 88.9 0.25 8.5E-06 44.1 3.4 80 184-270 2-86 (105)
279 2eqx_A Kelch repeat and BTB do 87.1 0.5 1.7E-05 41.9 4.2 30 250-279 8-37 (105)
280 4gns_B Protein CSD3, chitin bi 86.8 2.9 9.9E-05 50.0 11.7 60 712-771 613-682 (754)
281 1ya0_A SMG-7 transcript varian 85.1 3.2 0.00011 47.3 10.5 61 589-649 171-231 (497)
282 4fhn_B Nucleoporin NUP120; pro 84.3 14 0.00049 46.3 17.1 138 484-661 817-961 (1139)
283 3mkq_B Coatomer subunit alpha; 84.2 5.7 0.00019 38.7 10.3 85 712-800 34-141 (177)
284 3kae_A CDC27, possible protein 84.0 9.3 0.00032 36.9 11.3 118 474-640 28-150 (242)
285 4b4t_S RPN3, 26S proteasome re 83.0 0.95 3.3E-05 51.5 4.9 141 614-778 146-304 (523)
286 3mkq_B Coatomer subunit alpha; 78.2 51 0.0018 31.9 18.2 112 603-741 7-118 (177)
287 1qsa_A Protein (soluble lytic 77.6 1.1E+02 0.0038 35.5 37.2 162 590-766 272-435 (618)
288 2eqx_A Kelch repeat and BTB do 77.0 0.57 2E-05 41.5 0.4 68 284-359 9-84 (105)
289 4b4t_S RPN3, 26S proteasome re 76.7 2.4 8.2E-05 48.2 5.5 138 488-670 145-302 (523)
290 4b4t_R RPN7, 26S proteasome re 69.5 14 0.00048 41.0 9.6 67 475-541 127-197 (429)
291 4b4t_R RPN7, 26S proteasome re 68.8 6.7 0.00023 43.6 6.7 101 513-668 132-238 (429)
292 4fhn_B Nucleoporin NUP120; pro 67.4 14 0.00046 46.6 9.9 133 613-767 821-961 (1139)
293 2w2u_A Hypothetical P60 katani 66.8 9.1 0.00031 32.3 5.6 28 714-741 21-48 (83)
294 3spa_A Mtrpol, DNA-directed RN 61.6 62 0.0021 40.0 13.5 72 606-677 129-206 (1134)
295 3spa_A Mtrpol, DNA-directed RN 57.1 70 0.0024 39.5 12.9 133 639-811 128-266 (1134)
296 2w2u_A Hypothetical P60 katani 50.9 39 0.0013 28.4 6.7 31 728-771 16-46 (83)
297 4b4t_P 26S proteasome regulato 48.6 3.1E+02 0.011 30.1 17.2 132 605-742 178-325 (445)
298 2v6y_A AAA family ATPase, P60 47.4 46 0.0016 27.9 6.7 28 714-741 13-40 (83)
299 2v6y_A AAA family ATPase, P60 47.3 52 0.0018 27.5 7.0 30 382-411 10-39 (83)
300 2crb_A Nuclear receptor bindin 45.2 22 0.00076 30.5 4.2 28 479-506 15-42 (97)
301 2crb_A Nuclear receptor bindin 45.0 23 0.00078 30.4 4.3 29 712-740 15-43 (97)
302 3ubw_A 14-3-3E, 14-3-3 protein 40.1 3.2E+02 0.011 27.9 17.8 44 479-522 31-76 (261)
303 1qsa_A Protein (soluble lytic 39.0 5.1E+02 0.017 29.9 32.4 123 610-741 220-348 (618)
304 2cpt_A SKD1 protein, vacuolar 38.0 70 0.0024 28.6 6.8 28 714-741 20-47 (117)
305 2v6x_A Vacuolar protein sortin 37.4 30 0.001 29.0 4.0 30 712-741 13-42 (85)
306 1wfd_A Hypothetical protein 15 37.1 84 0.0029 26.8 6.9 28 383-410 15-42 (93)
307 3iqu_A 14-3-3 protein sigma; s 36.7 3.4E+02 0.012 27.3 18.7 29 712-740 176-204 (236)
308 1wy6_A Hypothetical protein ST 36.3 1.4E+02 0.0047 27.9 8.4 61 606-666 92-153 (172)
309 4b4t_P 26S proteasome regulato 35.9 4.7E+02 0.016 28.6 23.7 105 604-741 137-247 (445)
310 2r9r_B Paddle chimera voltage 35.8 23 0.00079 40.3 4.0 78 184-268 54-138 (514)
311 1wfd_A Hypothetical protein 15 33.9 37 0.0013 29.1 4.0 29 713-741 16-44 (93)
312 3re2_A Predicted protein; meni 33.7 54 0.0019 35.2 5.9 59 712-770 255-322 (472)
313 4ady_A RPN2, 26S proteasome re 33.7 7.4E+02 0.025 30.2 20.2 62 379-444 372-440 (963)
314 4a5x_A MITD1, MIT domain-conta 33.1 43 0.0015 28.3 4.2 27 715-741 19-45 (86)
315 3ax2_A Mitochondrial import re 33.0 52 0.0018 27.0 4.6 31 483-513 21-51 (73)
316 2cpt_A SKD1 protein, vacuolar 32.9 1.2E+02 0.0041 27.1 7.5 19 648-666 28-46 (117)
317 2dl1_A Spartin; SPG20, MIT, st 29.4 70 0.0024 28.6 5.1 28 713-740 23-50 (116)
318 4a5x_A MITD1, MIT domain-conta 27.9 62 0.0021 27.3 4.4 23 644-666 22-44 (86)
319 3u84_A Menin; MLL, JUND, ledgf 26.4 82 0.0028 34.5 5.9 40 731-770 298-344 (550)
320 3ph0_C ASCG; type III secretio 26.2 1.8E+02 0.0062 22.6 6.1 47 611-658 13-60 (61)
321 2v6x_A Vacuolar protein sortin 25.8 78 0.0027 26.4 4.6 31 381-411 11-41 (85)
322 3ax2_A Mitochondrial import re 25.6 70 0.0024 26.2 4.1 30 642-671 21-50 (73)
323 3re2_A Predicted protein; meni 23.4 1.3E+02 0.0043 32.5 6.5 25 516-540 300-324 (472)
324 4gq2_M Nucleoporin NUP120; bet 23.4 2.1E+02 0.0072 35.0 9.8 110 610-741 816-926 (950)
325 4gq4_A Menin; tumor suppressor 23.4 1E+02 0.0035 33.8 5.9 60 712-771 262-330 (489)
326 2ijq_A Hypothetical protein; s 22.2 2.6E+02 0.0088 26.4 8.0 60 607-666 35-103 (161)
327 2wpv_A GET4, UPF0363 protein Y 22.2 6.8E+02 0.023 26.1 15.6 64 601-664 131-214 (312)
328 3u84_A Menin; MLL, JUND, ledgf 21.9 1.4E+02 0.0046 32.8 6.5 43 464-506 298-345 (550)
329 3ubw_A 14-3-3E, 14-3-3 protein 21.9 6.4E+02 0.022 25.7 18.8 46 620-665 172-226 (261)
330 3uzd_A 14-3-3 protein gamma; s 21.5 6.4E+02 0.022 25.5 18.5 43 481-523 6-50 (248)
331 3uzd_A 14-3-3 protein gamma; s 21.3 6.5E+02 0.022 25.4 17.8 33 514-546 6-38 (248)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-40 Score=370.04 Aligned_cols=371 Identities=14% Similarity=0.089 Sum_probs=335.7
Q ss_pred HHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----CCh
Q 003249 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEG 461 (836)
Q Consensus 388 ~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~~~ 461 (836)
.+|..++..|++++|+..|+++++.+|. .++..+|.++...|++++|...+..++..+|..+.+|..+|.. +..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3577889999999999999999988665 4778899999999999999999999999999988888887642 666
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|+..|+++++++|+++.+|.++|.++...|++++|+..|.++++++|+ ...+..+|.++..+|++++|+..|+++++
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 57788899999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~ 620 (836)
++|++...+..++ .++...++++.| +..+.++++++|+...+|+++|.++...|++
T Consensus 164 ~~p~~~~~~~~l~------~~~~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 164 TQPNFAVAWSNLG------CVFNAQGEIWLA------------------IHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HCTTCHHHHHHHH------HHHHTTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred hCCCCHHHHHHHH------HHHHHcCCHHHH------------------HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 9999977665543 233344444444 7788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHH
Q 003249 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLED 700 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~ 700 (836)
++|+..|+++++++|+++.++.++|.++..+|++++|++.|+++++++|++
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------------------------- 270 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF----------------------------- 270 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-----------------------------
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------------------------
Confidence 999999999999999999999999999999999999999999999987765
Q ss_pred HhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCH
Q 003249 701 ALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNA 778 (836)
Q Consensus 701 Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a 778 (836)
+.+|+++|.+|...|++++|++.|++++++.|. .++.++|.++...|++++|+..|+++++++|+++
T Consensus 271 -----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 339 (388)
T 1w3b_A 271 -----------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339 (388)
T ss_dssp -----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 467999999999999999999999999998764 6889999999999999999999999999999999
Q ss_pred HHHHHHHH----ccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHh
Q 003249 779 SAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFL 822 (836)
Q Consensus 779 ~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~ 822 (836)
.+|.+++. .|++++|+..|++|++++|+.+.+|.++|.++..++
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 99999853 589999999999999999999999999999988765
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.7e-37 Score=341.34 Aligned_cols=342 Identities=14% Similarity=0.102 Sum_probs=312.2
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh--
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~-- 457 (836)
.+.++..+|.++...|++++|+..++++++.+|. .++..+|.++...|++++|+..+.+++...|+...+|..++.
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 3567889999999999999999999999998765 478999999999999999999999999999998888877764
Q ss_pred --cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 003249 458 --YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (836)
Q Consensus 458 --~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d 534 (836)
.++.++|+..|+++++++|++..++..+|.++..+|++++|+..|.++++.+|+ ..++.++|.++..+|++++|+..
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 366699999999999999999999999999999999999999999999999997 57888999999999999999999
Q ss_pred HHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003249 535 VQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL 614 (836)
Q Consensus 535 ~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l 614 (836)
|+++++++|++..++..++ .++...+.++. ++..+.++++++|+++.+|+++|.++
T Consensus 192 ~~~al~~~p~~~~~~~~lg------~~~~~~~~~~~------------------A~~~~~~al~~~p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 192 FEKAVTLDPNFLDAYINLG------NVLKEARIFDR------------------AVAAYLRALSLSPNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHH------HHHHTTTCTTH------------------HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHH------HHHHHcCCHHH------------------HHHHHHHHHhhCcCCHHHHHHHHHHH
Confidence 9999999999977665443 23333444444 47889999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHH
Q 003249 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTV 694 (836)
Q Consensus 615 ~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~ 694 (836)
.+.|++++|++.|+++++++|++++++.++|.++..+|++++|++.|++++++.|++
T Consensus 248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------------------- 304 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH----------------------- 304 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-----------------------
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-----------------------
Confidence 999999999999999999999999999999999999999999999999999887755
Q ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHH
Q 003249 695 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (836)
Q Consensus 695 i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie 772 (836)
+.+++++|.+|...|++++|+..|++++++.|. .++.++|.++...|++++|+..|+++++
T Consensus 305 -----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 305 -----------------ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp -----------------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred -----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 468999999999999999999999999999765 6899999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHc
Q 003249 773 KARNNASAYEKRSEY 787 (836)
Q Consensus 773 ~~p~~a~Ay~~r~~~ 787 (836)
++|+++.+|.+++..
T Consensus 368 ~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 368 ISPTFADAYSNMGNT 382 (388)
T ss_dssp TCTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHhHHHH
Confidence 999999999998753
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-34 Score=338.51 Aligned_cols=421 Identities=12% Similarity=0.009 Sum_probs=350.7
Q ss_pred hHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHhcCCHHHHHHHHHHhH
Q 003249 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVI 442 (836)
Q Consensus 364 ~~v~LLe~a~~ca~~~~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l-~~~~a~~~la~~~~~~G~~~~A~~~~~~ai 442 (836)
.+..++.++...... ...++.+|.++...|++++|+..|++++.. ....++..++.++...|++++|+..+++..
T Consensus 102 ~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 177 (597)
T 2xpi_A 102 CAAFVGEKVLDITGN----PNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN 177 (597)
T ss_dssp HHHHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhCCC----chHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence 444455555543222 256778999999999999999999998765 345688889999999999999999988644
Q ss_pred hcc----------------CCchHHHHHhhh----cCChhhHHHHHHHHHhcCCCChHHHHHHHH---------------
Q 003249 443 SSV----------------TPLGWMYQERSL----YCEGDKRWEDLDKATALDPTLSYPYMYRAS--------------- 487 (836)
Q Consensus 443 ~~~----------------~~~~~ay~~r~~----~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~--------------- 487 (836)
... +..+.+|..++. .+..++|+..|+++++++|++..++..++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (597)
T 2xpi_A 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLK 257 (597)
T ss_dssp TTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHh
Confidence 333 223445555442 255599999999999999999998887754
Q ss_pred -----------------------HHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003249 488 -----------------------SLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (836)
Q Consensus 488 -----------------------~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~ 544 (836)
.+.+.|++++|+..|+++++..++...+..+|.+|...|++++|+..|+++++.+|+
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 337 (597)
T 2xpi_A 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337 (597)
T ss_dssp SCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc
Confidence 344789999999999999998667788999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003249 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (836)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl 624 (836)
+...+..++. .+...++++.| +..+.++++.+|+++..|+.+|.++.+.|++++|+
T Consensus 338 ~~~~~~~l~~------~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 338 NLDVYPLHLA------SLHESGEKNKL------------------YLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp CCTTHHHHHH------HHHHHTCHHHH------------------HHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHH------HHHHhCCHHHH------------------HHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHH
Confidence 8766544332 22334444444 67788899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHHHHHHHhc
Q 003249 625 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (836)
Q Consensus 625 ~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~ 703 (836)
+.|+++++++|++.++|+.+|.++.+.|++++|++.|++++++.|++ .+++..+..+...| ....++..++++++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG----NILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875 66777777665544 66778888999887
Q ss_pred CCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC------Cch---hHHhhHHHHHHhcCCHHHHHHHHHHHHHhc
Q 003249 704 CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI------RHT---RAHQGLARVHFLKNNKTTAYEEMTKLIKKA 774 (836)
Q Consensus 704 ~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l------~~~---~A~~~la~~~~~~g~~~~A~~~~~kaie~~ 774 (836)
..++. +.+|+++|.+|...|++++|++.|++++++ +|. .++.++|.++...|++++|++.|+++++++
T Consensus 470 ~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 470 LFQYD---PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 65553 689999999999999999999999999987 453 588999999999999999999999999999
Q ss_pred CCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcccchhhHHHHH
Q 003249 775 RNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLI 819 (836)
Q Consensus 775 p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~ 819 (836)
|+++.+|..++ ..|++++|+..|+++++++|+++.+|...|.++.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999985 4599999999999999999999999998887653
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=329.86 Aligned_cols=373 Identities=13% Similarity=0.037 Sum_probs=317.0
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch-hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh--
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~-~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~-- 457 (836)
..+.+++.+|..++..|+|++|+..|+++++.+|. .++..+|.++...|++++|+..+++++..+|+...++..+|.
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 46789999999999999999999999999998653 478899999999999999999999999999988888877764
Q ss_pred --cCChhhHHHHHHHHHhcCCCC---------------------------------------------------------
Q 003249 458 --YCEGDKRWEDLDKATALDPTL--------------------------------------------------------- 478 (836)
Q Consensus 458 --~~~~~eAi~d~~kAi~ldP~~--------------------------------------------------------- 478 (836)
.+..++|+..|+++++++|.+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 366689999999999988633
Q ss_pred ----------------------hHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----c--CC-------C-hHHHHHH
Q 003249 479 ----------------------SYPYMYRASSLMT---KQNVEAALAEINRILG-----F--KL-------A-LECLELR 518 (836)
Q Consensus 479 ----------------------~~ay~~rg~~l~~---~g~~~eAi~~~~kai~-----l--~P-------~-~~~~~~r 518 (836)
+.++..+|.++.. .|++++|+..|+++++ + +| . ..+++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 7788888888886 8999999999999999 6 44 2 3567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHh
Q 003249 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (836)
Q Consensus 519 g~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~ 598 (836)
|.++...|++++|+..|+++++++|+ ...+..++. ++...+++ ..++..+.+++.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~------~~~~~~~~------------------~~A~~~~~~~~~ 298 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMAL------IMADRNDS------------------TEYYNYFDKALK 298 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHH------HHHTSSCC------------------TTGGGHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHH------HHHHCCCH------------------HHHHHHHHHHhh
Confidence 99999999999999999999999998 554443321 11222222 235778899999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHH
Q 003249 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a 678 (836)
.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|++++++.|++
T Consensus 299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------- 371 (514)
T 2gw1_A 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA------- 371 (514)
T ss_dssp TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC-------
T ss_pred cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876654
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchh--------HHhhH
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR--------AHQGL 750 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~--------A~~~l 750 (836)
+.++.++|.+|...|++++|+..|++++++.|.. ++.++
T Consensus 372 ---------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 372 ---------------------------------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp ---------------------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 3578999999999999999999999999985543 89999
Q ss_pred HHHHHh---cCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcccchhhHHHH
Q 003249 751 ARVHFL---KNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGL 818 (836)
Q Consensus 751 a~~~~~---~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~ 818 (836)
|.++.. .|++++|+..|+++++++|+++.+|..++ ..|++++|+..|++|++++|+...++.......
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 999999 99999999999999999999999998885 458999999999999999999887776554433
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=7.9e-33 Score=318.91 Aligned_cols=402 Identities=10% Similarity=0.017 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh
Q 003249 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (836)
Q Consensus 380 ~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~ 457 (836)
...+.+++.+|..+...|++++|+..|+++++.+|. .++..+|.++...|++++|+..+.+++..+|+...++..+|.
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 446789999999999999999999999999998654 578899999999999999999999999888888887777764
Q ss_pred ----cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH--------------------
Q 003249 458 ----YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE-------------------- 513 (836)
Q Consensus 458 ----~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~-------------------- 513 (836)
.+..++|+..|+ ++.++|+....+.. .+...+...+|+..++++++..|...
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGASIE---PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChHHHH---HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 256688888885 88888887665432 22233333444444444444322100
Q ss_pred ------------------HHHHH--------HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH-HHHHHHHHHHHhh
Q 003249 514 ------------------CLELR--------FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA-ASQLHMLVREHID 566 (836)
Q Consensus 514 ------------------~~~~r--------g~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~-~~~~~~~l~~~~~ 566 (836)
....+ +......|++++|+..|+++++.+|++...+...+ .....+..+...+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 00001 11222334555666666666666665544332222 1222333344444
Q ss_pred hHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003249 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGW 646 (836)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~ 646 (836)
+++.| +..+.++++.+|+ ..+++.+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 258 ~~~~A------------------~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 318 (537)
T 3fp2_A 258 NLLDA------------------QVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ 318 (537)
T ss_dssp CHHHH------------------HHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHH------------------HHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 44444 4445555555555 5555566666666666666666666666666666666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhc
Q 003249 647 ILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC 725 (836)
Q Consensus 647 il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~ 725 (836)
++..+|++++|+..|+++++++|+. .+++..|..+... +....++..++++++..++. +.++.++|.+|...
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ----GKFTESEAFFNETKLKFPTL---PEVPTFFAEILTDR 391 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHh
Confidence 6666666666666666666655554 3444444444332 23444555555555544333 57899999999999
Q ss_pred CCHHHHHHHHHHHHcCCch--------hHHhhHHHHHHhc----------CCHHHHHHHHHHHHHhcCCCHHHHHHHH--
Q 003249 726 GQLDLAADCYSNALKIRHT--------RAHQGLARVHFLK----------NNKTTAYEEMTKLIKKARNNASAYEKRS-- 785 (836)
Q Consensus 726 g~~deAi~~y~kAL~l~~~--------~A~~~la~~~~~~----------g~~~~A~~~~~kaie~~p~~a~Ay~~r~-- 785 (836)
|++++|+..|++++++.|. ..+.++|.++... |++++|+..|+++++++|+++.+|..++
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998543 2356677889888 9999999999999999999999999985
Q ss_pred --HccCHHHHHHHHHHhHhcCCCCcccc
Q 003249 786 --EYCDRELTRADLEMVTQLDPLRVYPY 811 (836)
Q Consensus 786 --~~~~~~~A~~D~~~Ai~l~P~~~~~y 811 (836)
..|++++|+..|++|++++|+.....
T Consensus 472 ~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 45999999999999999999877653
No 6
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=319.09 Aligned_cols=365 Identities=12% Similarity=-0.019 Sum_probs=272.3
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhcc---------c--hhhHhhHHHHHHhcCCHHHHHHHHHHhHhccC----
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG---------H--IYSIAGLARLGYIKGHKLWAYEKLNSVISSVT---- 446 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~---------~--~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~---- 446 (836)
++..|+++|.++..+|++++|+++|++|+++. + ..++.++|.+|..+|++++|...+++++.+.+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 45678899999999999999999999998861 1 12577899999999999999999999987642
Q ss_pred ----CchHHHHHhhh----c--CChhhHHHHHHHHHhcCCCChHHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCC-h
Q 003249 447 ----PLGWMYQERSL----Y--CEGDKRWEDLDKATALDPTLSYPYMYRASSLM---TKQNVEAALAEINRILGFKLA-L 512 (836)
Q Consensus 447 ----~~~~ay~~r~~----~--~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~---~~g~~~eAi~~~~kai~l~P~-~ 512 (836)
..+.++...|. + +..++|+..|++|++++|+++.++.++|.++. ..++.++|+..|++|++++|+ +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 34555555542 1 23489999999999999999999999998854 567889999999999999997 5
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccc
Q 003249 513 ECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIG 588 (836)
Q Consensus 513 ~~~~~rg~~~~~----lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~ 588 (836)
.++.++|..+.. .|++++|+..|++++.++|++...+..++ .++...+.++.|
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg------~~~~~~~~~~~A----------------- 266 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAA------KFYRRKDEPDKA----------------- 266 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHH------HHHHHTTCHHHH-----------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHH------HHHHHcCchHHH-----------------
Confidence 677777766554 57889999999999999999987655443 345555666555
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 003249 589 SLSVIYQMLESDAPKGVLYFRQSLLLLR-------------------LNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (836)
Q Consensus 589 aL~~~~~al~~~P~~~~~~~~~gl~l~~-------------------l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~ 649 (836)
+..+.++++.+|+++.+|+++|.++.. .+.+++|+..++++++++|+++.+++.+|.++.
T Consensus 267 -~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 267 -IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345 (472)
T ss_dssp -HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred -HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence 778899999999999999999998754 345789999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHH-HHhcCCH
Q 003249 650 DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSV-YVDCGQL 728 (836)
Q Consensus 650 ~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~-y~~~g~~ 728 (836)
.+|++++|+..|+++|+++|+... ....+.++|.+ +...|++
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVA-------------------------------------KQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHH-------------------------------------HHHHHHHHHHHHHHTSSCH
T ss_pred HhccHHHHHHHHHHHHhcCCCChH-------------------------------------HHHHHHHHHHHHHHHCCCH
Confidence 999999999999999998876520 02356677765 4578999
Q ss_pred HHHHHHHHHHHcCCchhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH----ccCHHHHHHHHHHhHhcC
Q 003249 729 DLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLD 804 (836)
Q Consensus 729 deAi~~y~kAL~l~~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~----~~~~~~A~~D~~~Ai~l~ 804 (836)
++|+..|++||+++|.... ..+....+...++++++.+|+++.+|.++|. .|++++|++.|++|++++
T Consensus 389 ~~Ai~~y~kal~i~~~~~~--------~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 389 DKAIHHFIEGVKINQKSRE--------KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHSCCCCHH--------HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHhcCcccHH--------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999876422 1122344556678999999999999999964 489999999999999999
Q ss_pred CCCcccchhhH
Q 003249 805 PLRVYPYRYRA 815 (836)
Q Consensus 805 P~~~~~y~~r~ 815 (836)
|..+.|+...|
T Consensus 461 ~~~p~a~~~~G 471 (472)
T 4g1t_A 461 SLIPSASSWNG 471 (472)
T ss_dssp -----------
T ss_pred CCCCcHhhcCC
Confidence 99998887766
No 7
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.1e-31 Score=290.78 Aligned_cols=324 Identities=16% Similarity=0.138 Sum_probs=234.5
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCC
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCE 460 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~ 460 (836)
+.+++.+|.++...|++++|+..|+++++.+|. .++..+|.++...|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~---------------------------- 54 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSK---------------------------- 54 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHH----------------------------
Confidence 345566666666666666666666655554332 23444444444444432
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C-hHHHHHH------------HHHHHh
Q 003249 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---A-LECLELR------------FCFFLA 524 (836)
Q Consensus 461 ~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P---~-~~~~~~r------------g~~~~~ 524 (836)
+|+..|+++++++|++..+|..+|.++...|++++|+..|+++++++| + ...+..+ |.++..
T Consensus 55 --~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 55 --AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp --HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334455555555555555555555555555555555555555555 3 2333333 344444
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCH
Q 003249 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (836)
Q Consensus 525 lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~ 604 (836)
.|++++|+..|++ +++.+|+++
T Consensus 133 ~~~~~~A~~~~~~----------------------------------------------------------~~~~~~~~~ 154 (359)
T 3ieg_A 133 GADYTAAITFLDK----------------------------------------------------------ILEVCVWDA 154 (359)
T ss_dssp TTCHHHHHHHHHH----------------------------------------------------------HHHHCTTCH
T ss_pred ccCHHHHHHHHHH----------------------------------------------------------HHHhCCCch
Confidence 5555555554444 445555556
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhcc
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 684 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~ 684 (836)
.++..+|.++..+|++++|+..++++++++|+++++++.+|.++..+|++++|+..|++++++.|+....+..-.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~----- 229 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK----- 229 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHH-----
Confidence 778889999999999999999999999999999999999999999999999999999999999988743211100
Q ss_pred ccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch------hHHhhHHHHHHhcC
Q 003249 685 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKN 758 (836)
Q Consensus 685 ~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~------~A~~~la~~~~~~g 758 (836)
. +.......++|.++...|++++|+..|++++++.|. .++..+|.++...|
T Consensus 230 ---------------~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 230 ---------------Q--------VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp ---------------H--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------H--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHcc
Confidence 0 001356778899999999999999999999998764 45778999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHH----ccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHh
Q 003249 759 NKTTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFL 822 (836)
Q Consensus 759 ~~~~A~~~~~kaie~~p~~a~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~ 822 (836)
++++|+..|+++++++|+++.+|..++. .|++++|+..|++|++++|++..++...+.+.....
T Consensus 287 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 287 KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999964 599999999999999999999998888777766544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.8e-31 Score=300.93 Aligned_cols=322 Identities=14% Similarity=0.138 Sum_probs=267.0
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|+..|+++++++|+++.+|+.+|.++...|++++|+..|+++++++|+ ..++..+|.+|..+|++++|+..|+++++
T Consensus 43 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444577778888999999999999999999999999999999999997 57788899999999999999999999999
Q ss_pred hCCCch---hhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003249 541 LSPDYR---MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (836)
Q Consensus 541 l~P~~~---~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l 617 (836)
++|++. ..+..++.. +.....+..+.++.... +...++..+.++++.+|+++.+++.+|.++.+.
T Consensus 123 ~~~~~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 123 SNPSENEEKEAQSQLIKS------DEMQRLRSQALNAFGSG------DYTAAIAFLDKILEVCVWDAELRELRAECFIKE 190 (450)
T ss_dssp SCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred cCCCChhhHHHHHHHHHH------HHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC
Confidence 999886 554443221 12222233333222211 112358889999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHH
Q 003249 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 697 (836)
Q Consensus 618 ~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~ 697 (836)
|++++|++.|+++++.+|+++.+++.+|.++..+|++++|+..|++++++.|+....+.....+
T Consensus 191 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~---------------- 254 (450)
T 2y4t_A 191 GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV---------------- 254 (450)
T ss_dssp TCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH----------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999998874322211100
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch------hHHhhHHHHHHhcCCHHHHHHHHHHHH
Q 003249 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTKLI 771 (836)
Q Consensus 698 l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~------~A~~~la~~~~~~g~~~~A~~~~~kai 771 (836)
.....+.++|.++...|++++|+..|++++++.|. .++.++|.++...|++++|+..+++++
T Consensus 255 ------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 255 ------------KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp ------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11346778899999999999999999999998764 378999999999999999999999999
Q ss_pred HhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhh
Q 003249 772 KKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLN 823 (836)
Q Consensus 772 e~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~ 823 (836)
+++|+++.+|..++ ..|++++|+..|++|++++|++..++...|.+....++
T Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 99999999999995 45899999999999999999999999999877666554
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-31 Score=313.88 Aligned_cols=391 Identities=12% Similarity=0.023 Sum_probs=321.9
Q ss_pred hHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc------------------chhhHhhHHHHH
Q 003249 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG------------------HIYSIAGLARLG 425 (836)
Q Consensus 364 ~~v~LLe~a~~ca~~~~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~------------------~~~a~~~la~~~ 425 (836)
.+..++..+...+. .+.+++.+|.++...|++++|+..|++..... ...+|..+|.++
T Consensus 135 ~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 135 RAKCLLTKEDLYNR----SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp HHHHHHHHTCGGGT----CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc----chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence 34445554443322 34578888999999999999998888643322 245788888899
Q ss_pred HhcCCHHHHHHHHHHhHhccCCchHHHHHhhh------------------------------------------cCChhh
Q 003249 426 YIKGHKLWAYEKLNSVISSVTPLGWMYQERSL------------------------------------------YCEGDK 463 (836)
Q Consensus 426 ~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~------------------------------------------~~~~~e 463 (836)
...|++++|+..|.+++..+|+...++...+. .+..++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHH
Confidence 99999999999999998888876665443321 123378
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003249 464 RWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLS 542 (836)
Q Consensus 464 Ai~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~ 542 (836)
|+..|++++++ |.++..|..+|.++...|++++|+..|+++++.+|+ ..++..++.++...|++++|+..|+++++.+
T Consensus 291 A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 291 AEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp HHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 99999999888 788999999999999999999999999999999996 5778889999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 003249 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA 622 (836)
Q Consensus 543 P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~e 622 (836)
|++...+..++ ..+...++++.| +..+.++++++|++..+|+.+|.++.+.|++++
T Consensus 370 ~~~~~~~~~l~------~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 370 PEKAVTWLAVG------IYYLCVNKISEA------------------RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp TTSHHHHHHHH------HHHHHTTCHHHH------------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred cccHHHHHHHH------HHHHHhccHHHH------------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 99876554432 344445555555 677889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHHHHHHH
Q 003249 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDA 701 (836)
Q Consensus 623 Al~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~l~~A 701 (836)
|++.|+++++..|+++.+++.+|.++...|++++|++.|++++++.|.+ .+++..+..+... +..+.++..++++
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNK----SDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999876 4566677666554 3677788888888
Q ss_pred hcCCcc---ccch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 003249 702 LKCPSD---RLRK-GQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (836)
Q Consensus 702 l~~~~~---~~~~-~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p 775 (836)
++..++ .+.. ..+|+++|.+|...|++++|++.|+++++++| ..++..+|.++...|++++|++.|+++++++|
T Consensus 502 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 876322 2332 68999999999999999999999999999865 47899999999999999999999999999999
Q ss_pred CCHHHHHHHHHc
Q 003249 776 NNASAYEKRSEY 787 (836)
Q Consensus 776 ~~a~Ay~~r~~~ 787 (836)
+++.+|..++..
T Consensus 582 ~~~~~~~~l~~~ 593 (597)
T 2xpi_A 582 NEIMASDLLKRA 593 (597)
T ss_dssp TCHHHHHHHHHT
T ss_pred CChHHHHHHHHH
Confidence 999999998764
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=3.5e-31 Score=298.56 Aligned_cols=339 Identities=13% Similarity=0.083 Sum_probs=288.3
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~ 458 (836)
..+.+++.+|..+...|++++|+..|+++++.+|. .++..+|.++...|++++
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~------------------------- 78 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA------------------------- 78 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHH-------------------------
Confidence 45678999999999999999999999999987554 567788888887777644
Q ss_pred CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----HHHH------------HHHHHH
Q 003249 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----ECLE------------LRFCFF 522 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~----~~~~------------~rg~~~ 522 (836)
|+..|+++++++|+++.+|..+|.++..+|++++|+..|+++++++|+. .++. .+|.++
T Consensus 79 -----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 153 (450)
T 2y4t_A 79 -----ALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153 (450)
T ss_dssp -----HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555888888999999999999999999999999999999999999974 3433 347779
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCC
Q 003249 523 LALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP 602 (836)
Q Consensus 523 ~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~ 602 (836)
...|++++|+..|+++++++|++...+..++ .++...++++. ++..+.++++.+|+
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~------~~~~~~g~~~~------------------A~~~~~~~~~~~~~ 209 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRA------ECFIKEGEPRK------------------AISDLKAASKLKND 209 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH------HHHHHTTCGGG------------------GHHHHHHHHHHHCS
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHH------HHHHHCCCHHH------------------HHHHHHHHHHhCCC
Confidence 9999999999999999999999876554433 22333333333 47888999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYE------------GWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~------------G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
++.+|+.+|.++...|++++|+..|+++++++|++...+..+ |.++..+|++++|+..|++++++.|+
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999998776 99999999999999999999998877
Q ss_pred hHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHh
Q 003249 671 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQ 748 (836)
Q Consensus 671 ~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~ 748 (836)
+..+ ...++.++|.+|...|++++|+..|+++++++| ..++.
T Consensus 290 ~~~~------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 333 (450)
T 2y4t_A 290 IAEY------------------------------------TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333 (450)
T ss_dssp SHHH------------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chHH------------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 5211 024789999999999999999999999999866 47899
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHH----------------cc-----CHHHHHHHHHH-hHhcCCC
Q 003249 749 GLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSE----------------YC-----DRELTRADLEM-VTQLDPL 806 (836)
Q Consensus 749 ~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~----------------~~-----~~~~A~~D~~~-Ai~l~P~ 806 (836)
++|.++...|++++|+..|.++++++|+++.++..++. +| +.+++...|.+ +++.+|+
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999988761 13 56778999996 9999998
Q ss_pred Ccc
Q 003249 807 RVY 809 (836)
Q Consensus 807 ~~~ 809 (836)
...
T Consensus 414 ~~~ 416 (450)
T 2y4t_A 414 NFQ 416 (450)
T ss_dssp GCC
T ss_pred CCC
Confidence 764
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-31 Score=305.23 Aligned_cols=374 Identities=13% Similarity=0.042 Sum_probs=317.5
Q ss_pred HHHHHHhhhccCCCChhHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHH
Q 003249 348 YCLLSEVAMNLDPRSDKTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLG 425 (836)
Q Consensus 348 ~~lL~~V~~~~~~~s~~~v~LLe~a~~ca~~~~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~ 425 (836)
+..++.+.+... ....++..+.++.+..+ .+.+++.+|.++...|++++|+.+|+++++++|. .++..+|.++
T Consensus 9 ~~~~g~~~~~~g-~~~~A~~~~~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRNK-KYDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHTS-CHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHHHhcCc----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 445566665554 44556667777766543 3678999999999999999999999999998765 4788999999
Q ss_pred HhcCCHHHHHHHHHHhHhccCCc---------------------------------------------------------
Q 003249 426 YIKGHKLWAYEKLNSVISSVTPL--------------------------------------------------------- 448 (836)
Q Consensus 426 ~~~G~~~~A~~~~~~ai~~~~~~--------------------------------------------------------- 448 (836)
...|++++|+..+.+++...|..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999998877521
Q ss_pred ----------------------hHHHHHhhh-------cCChhhHHHHHHHHHh-----c--C-------CCChHHHHHH
Q 003249 449 ----------------------GWMYQERSL-------YCEGDKRWEDLDKATA-----L--D-------PTLSYPYMYR 485 (836)
Q Consensus 449 ----------------------~~ay~~r~~-------~~~~~eAi~d~~kAi~-----l--d-------P~~~~ay~~r 485 (836)
+.++..++. .+..++|+..|+++++ + + |.++.+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 444444443 3455899999999999 7 4 5667899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHh
Q 003249 486 ASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (836)
Q Consensus 486 g~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~ 565 (836)
|.++...|++++|+..|+++++.+|+..++..+|.++..+|++++|+..|+++++++|++...+..++ .++...
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~------~~~~~~ 317 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG------QMNFIL 317 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHH------HHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHH------HHHHHh
Confidence 99999999999999999999999999666788999999999999999999999999999877554433 233334
Q ss_pred hhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 003249 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEG 645 (836)
Q Consensus 566 ~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G 645 (836)
++++.| +..+.++++.+|++..++..+|.++...|++++|+..++++++.+|+++++++.+|
T Consensus 318 ~~~~~A------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 379 (514)
T 2gw1_A 318 QNYDQA------------------GKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379 (514)
T ss_dssp TCTTHH------------------HHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred CCHHHH------------------HHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 444444 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHh-
Q 003249 646 WILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD- 724 (836)
Q Consensus 646 ~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~- 724 (836)
.++..+|++++|+..|++++++.|+.. .......++.++|.+|..
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLD----------------------------------GIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSS----------------------------------SCSSCSHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccc----------------------------------hHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999998876541 000113589999999999
Q ss_pred --cCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003249 725 --CGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 784 (836)
Q Consensus 725 --~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r 784 (836)
.|++++|+..|++++++.|. .++..+|.++...|++++|+..|+++++++|+++.++...
T Consensus 426 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999999999998664 6889999999999999999999999999999999998776
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=4.2e-32 Score=312.82 Aligned_cols=387 Identities=11% Similarity=0.005 Sum_probs=293.1
Q ss_pred hhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----CChhhHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 003249 415 IYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRWEDLDKATALDPTLSYPYMYRASSLM 490 (836)
Q Consensus 415 ~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~ 490 (836)
..++..+|..+...|++++|+..|++++..+|+.+.++..+|.. ++.++|+..|+++++++|+++.+|..+|.++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 35678889999999999999999999999998888888777642 66689999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-----------------------
Q 003249 491 TKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM----------------------- 547 (836)
Q Consensus 491 ~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~----------------------- 547 (836)
.+|++++|+..|+ ++.++|+..... ...+...+...+|+..+++++..+|+...
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFDGAS--IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHTCHHHHHHHHH-HHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HcCCHHHHHHHHH-HHhcCCCCChHH--HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999995 888888643211 12334455567788888888777554321
Q ss_pred --------------hhhhHHHH--HHHHHHHHHhhhHhHHHHHH-hhhhccCcccccchHHHHHHHHhcCCCCHHHHHHH
Q 003249 548 --------------FEGRVAAS--QLHMLVREHIDNWTIADCWL-QLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (836)
Q Consensus 548 --------------~~~~~~~~--~~~~~l~~~~~~~~~a~~~~-~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~ 610 (836)
....+... ...+......+.+++|.... ++....+...+ ..+..+.+++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~------------~~~~~~~~~~~~ 249 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP------------LRENAALALCYT 249 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH------------HHHHHHHHHHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch------------hhHHHHHHHHHH
Confidence 00000000 01144455556666664322 22222221110 011235678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCC
Q 003249 611 SLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSS 689 (836)
Q Consensus 611 gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~ 689 (836)
|.++...|++++|+..|+++++++|+ +.+++.+|.++..+|++++|+..|+++++++|+. .+++..|..+... +
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 324 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL----Q 324 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----T
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc----C
Confidence 99999999999999999999999999 9999999999999999999999999999999987 5677777766543 4
Q ss_pred ChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHH
Q 003249 690 CSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEM 767 (836)
Q Consensus 690 ~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~ 767 (836)
....++..++++++..++. +.++.++|.+|...|++++|+..|++++++.|. .++.++|.++...|++++|+..|
T Consensus 325 ~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 6778899999999876654 589999999999999999999999999998654 68999999999999999999999
Q ss_pred HHHHHhcCCCHHHHH------HHH----Hc----------cCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhhh
Q 003249 768 TKLIKKARNNASAYE------KRS----EY----------CDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNL 824 (836)
Q Consensus 768 ~kaie~~p~~a~Ay~------~r~----~~----------~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~~ 824 (836)
.++++++|++..++. .++ .. |++++|+..|++|++++|+...+|...|.++...|+.
T Consensus 402 ~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Confidence 999999987754422 221 22 8889999999999999999999999999999988864
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-30 Score=295.99 Aligned_cols=358 Identities=11% Similarity=-0.007 Sum_probs=238.2
Q ss_pred hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH
Q 003249 416 YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV 495 (836)
Q Consensus 416 ~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~ 495 (836)
..+..+|.++..+|++++|++.+.+++++.+. ......+|..+.+|.++|.+|..+|++
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~---------------------~~~~~~~~~~~~~~~nla~~y~~~g~~ 110 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQ---------------------EHADQAEIRSLVTWGNYAWVYYHMGRL 110 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------------HSGGGCTTTTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---------------------cCccccchHHHHHHHHHHHHHHHcCCh
Confidence 45678999999999999999988777665220 011223566666777777777777777
Q ss_pred HHHHHHHHHHHhcCC--------C-hHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHH
Q 003249 496 EAALAEINRILGFKL--------A-LECLELRFCFFLA--LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH 564 (836)
Q Consensus 496 ~eAi~~~~kai~l~P--------~-~~~~~~rg~~~~~--lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~ 564 (836)
++|+..|++++++.| + +..+.++|+++.. .++|++|+.+|++|++++|+++.++..++..... ...
T Consensus 111 ~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~---l~~ 187 (472)
T 4g1t_A 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR---LDN 187 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hcC
Confidence 777777777776532 1 2445556655544 3457777777777777777776655444432111 122
Q ss_pred hhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHH
Q 003249 565 IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL----NCPEAAMRSLQLARQHAASDHER 640 (836)
Q Consensus 565 ~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l----~~~~eAl~~~~~Al~l~P~~~ea 640 (836)
.+..+.| +..+.++++++|+++.++..+|..+..+ +++++|+..++++++++|+++.+
T Consensus 188 ~~~~~~a------------------l~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~ 249 (472)
T 4g1t_A 188 WPPSQNA------------------IDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249 (472)
T ss_dssp SCCCCCT------------------HHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHH
T ss_pred chHHHHH------------------HHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHH
Confidence 2333333 4556667777777777777776665543 45566777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccc--------cCCC-------ChhHHHHHHHHHhcC
Q 003249 641 LVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSS--------QDSS-------CSSTVVSLLEDALKC 704 (836)
Q Consensus 641 l~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~--------l~~~-------~~~~~i~~l~~Al~~ 704 (836)
+.++|.++..+|++++|+..|++|++++|++ .+++..|..+.... .... ....++..++++++.
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 7777777777777777777777777777765 34444443322111 0011 122334445555554
Q ss_pred CccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-----hHHhhHHHH-HHhcCCHHHHHHHHHHHHHhcCCCH
Q 003249 705 PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARV-HFLKNNKTTAYEEMTKLIKKARNNA 778 (836)
Q Consensus 705 ~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-----~A~~~la~~-~~~~g~~~~A~~~~~kaie~~p~~a 778 (836)
.+.. ..++.++|.+|...|++++|+++|++||++++. ..+.++|.+ +..+|++++|+..|.++++++|++.
T Consensus 330 ~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 330 NDNL---FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp CTTT---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred CCch---hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 4433 468999999999999999999999999998643 246677764 4678999999999999999999987
Q ss_pred HHHHHHHHccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhhh
Q 003249 779 SAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNL 824 (836)
Q Consensus 779 ~Ay~~r~~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~~ 824 (836)
...... +.+...++++++++|+++.+|.++|.++...|+.
T Consensus 407 ~~~~~~------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 407 EKEKMK------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHH------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred HHHHHH------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 654332 4456678899999999999999999999999875
No 14
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=5.6e-31 Score=295.46 Aligned_cols=257 Identities=13% Similarity=0.132 Sum_probs=222.4
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCchh
Q 003249 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALED-YQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 470 kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~-~~~Ai~d~~~al~l~P~~~~ 547 (836)
.+|+++|+++.+|.++|.++...|++++|+..|+++|+++|+ ..+|++||.++..+|+ +++|+.+|+++|+++|++
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~-- 165 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN-- 165 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC--
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC--
Confidence 478999999999999999999999999999999999999997 6889999999999997 999999999999998876
Q ss_pred hhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003249 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (836)
Q Consensus 548 ~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~ 627 (836)
..+|+++|.++..+|++++|+.+|
T Consensus 166 --------------------------------------------------------~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 166 --------------------------------------------------------YQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHccCHHHHHHHH
Confidence 356778888888899999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCcc
Q 003249 628 QLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSD 707 (836)
Q Consensus 628 ~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~ 707 (836)
++|++++|+++.+|+++|+++..+|++++|++.|+++|+++|++
T Consensus 190 ~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~------------------------------------ 233 (382)
T 2h6f_A 190 ADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN------------------------------------ 233 (382)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------------------------------------
T ss_pred HHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------------------------
Confidence 99999999999999999999999999999999999999888776
Q ss_pred ccchHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHcCCch--hHHhhHHHHHHhcC--CHHHHHHHHHHHHHhcCCC
Q 003249 708 RLRKGQALNNLGSVYVD-CGQLDLA-----ADCYSNALKIRHT--RAHQGLARVHFLKN--NKTTAYEEMTKLIKKARNN 777 (836)
Q Consensus 708 ~~~~~~a~~nlG~~y~~-~g~~deA-----i~~y~kAL~l~~~--~A~~~la~~~~~~g--~~~~A~~~~~kaie~~p~~ 777 (836)
..+|+++|.+|.. .|.+++| +++|++||+++|. .++.++|.++..+| ++++|++.+.++ +++|++
T Consensus 234 ----~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~ 308 (382)
T 2h6f_A 234 ----NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS 308 (382)
T ss_dssp ----HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC
T ss_pred ----HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC
Confidence 4678888888888 5555777 5889999888764 68888998888888 688888888887 888999
Q ss_pred HHHHHHHHHc----c--------C-HHHHHHHHHHh-HhcCCCCcccchhhHHHHHHHhhhh
Q 003249 778 ASAYEKRSEY----C--------D-RELTRADLEMV-TQLDPLRVYPYRYRAAGLIVFLNLH 825 (836)
Q Consensus 778 a~Ay~~r~~~----~--------~-~~~A~~D~~~A-i~l~P~~~~~y~~r~~~~~~~~~~~ 825 (836)
..++..++.+ | + .++|+..|+++ +++||.+...|.+|+.++....+.|
T Consensus 309 ~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~~~~~ 370 (382)
T 2h6f_A 309 PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTE 370 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhccC
Confidence 8888877532 2 2 48899999999 9999999999999999988765543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=4e-29 Score=268.14 Aligned_cols=287 Identities=11% Similarity=0.023 Sum_probs=211.3
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 469 ~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
...+.-.|+++..+..+|..+...|++++|+..|+++++.+|+ ...+..++.++..+|++++|+..|+++++.+|++..
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 91 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH
Confidence 3445555666667777777777777777777777777777775 455556666677777777777777777777777655
Q ss_pred hhhhHHHHHHHHHHHHHhh-hHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003249 548 FEGRVAASQLHMLVREHID-NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (836)
Q Consensus 548 ~~~~~~~~~~~~~l~~~~~-~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~ 626 (836)
.+..++. ++...+ .++.| +..+.++++.+|+++.+|+.+|.++...|++++|+..
T Consensus 92 ~~~~l~~------~~~~~~~~~~~A------------------~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 92 SWFAVGC------YYLMVGHKNEHA------------------RRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp HHHHHHH------HHHHSCSCHHHH------------------HHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHH------HHHHhhhhHHHH------------------HHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 4443321 222222 33333 5566667777777777788888888888888888888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCc
Q 003249 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (836)
Q Consensus 627 ~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~ 706 (836)
|++++++.|+++.+++.+|.++..+|++++|+..|++++++.|+.
T Consensus 148 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----------------------------------- 192 (330)
T 3hym_B 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED----------------------------------- 192 (330)
T ss_dssp HHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-----------------------------------
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-----------------------------------
Confidence 888888888888888888888888888888888888888776654
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC---------c--hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 003249 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR---------H--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (836)
Q Consensus 707 ~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~---------~--~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p 775 (836)
+.+++++|.+|...|++++|+..|++++++. + ..++.++|.++...|++++|+..|+++++++|
T Consensus 193 -----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 193 -----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred -----hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 3578888888888888888888888888752 2 35788888888888888888888888888888
Q ss_pred CCHHHHHHHHH----ccCHHHHHHHHHHhHhcCCCCcccchhhHHHHH
Q 003249 776 NNASAYEKRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAGLI 819 (836)
Q Consensus 776 ~~a~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~ 819 (836)
+++.+|..++. .|++++|+..|++|++++|+++.++...|.++.
T Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 88888888753 488888888888888888888888888888773
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=2e-28 Score=264.99 Aligned_cols=277 Identities=16% Similarity=0.135 Sum_probs=242.9
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|+..|+++++.+|+++.+|+++|.++...|++++|+..|+++++++|+ ..++..+|.++..+|++++|+..|+++++
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 55556688999999999999999999999999999999999999999996 67888999999999999999999999999
Q ss_pred hCC---CchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003249 541 LSP---DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (836)
Q Consensus 541 l~P---~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l 617 (836)
++| ++...+..++. +.. ...+..+|.++...
T Consensus 100 ~~~~~~~~~~~~~~l~~--------------------------------------~~~--------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 100 SNPSEQEEKEAESQLVK--------------------------------------ADE--------MQRLRSQALDAFDG 133 (359)
T ss_dssp SCCCHHHHHHHHHHHHH--------------------------------------HHH--------HHHHHHHHHHHHHT
T ss_pred cCCcccChHHHHHHHHH--------------------------------------HHH--------HHHHHHHHHHHHHc
Confidence 999 66543322211 000 23466788899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHH
Q 003249 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 697 (836)
Q Consensus 618 ~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~ 697 (836)
|++++|+..++++++.+|++++++..+|.++..+|++++|+..|++++++.|..
T Consensus 134 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------- 187 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN-------------------------- 187 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC--------------------------
T ss_pred cCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------------------
Confidence 999999999999999999999999999999999999999999999999887765
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHH------------hhHHHHHHhcCCHHHH
Q 003249 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAH------------QGLARVHFLKNNKTTA 763 (836)
Q Consensus 698 l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~------------~~la~~~~~~g~~~~A 763 (836)
+.++.++|.+|...|++++|+..|++++++.|. .++ ..+|.++...|++++|
T Consensus 188 --------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 253 (359)
T 3ieg_A 188 --------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253 (359)
T ss_dssp --------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 468999999999999999999999999998764 222 3558899999999999
Q ss_pred HHHHHHHHHhcCCCHHH----HHHHH----HccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHhhh
Q 003249 764 YEEMTKLIKKARNNASA----YEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFLNL 824 (836)
Q Consensus 764 ~~~~~kaie~~p~~a~A----y~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~~~ 824 (836)
+..|++++++.|+++.. |..++ ..|++++|+..|+++++++|+.+.+|..+|.++...|+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 322 (359)
T 3ieg_A 254 TSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMY 322 (359)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH
Confidence 99999999999999854 44453 459999999999999999999999999999999988864
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=6.6e-29 Score=271.85 Aligned_cols=298 Identities=13% Similarity=0.066 Sum_probs=182.6
Q ss_pred HHhhccchHHHHH-HHHHHHhccch------hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhH
Q 003249 392 VRLLRKEYDEAEH-LFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKR 464 (836)
Q Consensus 392 ~~~~~g~y~eAi~-~f~~Al~l~~~------~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eA 464 (836)
++...|+|++|+. .|++++++.+. .++..+|.++...|++ ++|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~------------------------------~~A 83 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDL------------------------------PNA 83 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCH------------------------------HHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCH------------------------------HHH
Confidence 5556678888888 88888776432 3466677777777665 455
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003249 465 WEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (836)
Q Consensus 465 i~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P 543 (836)
+..|+++++++|+++.+|.++|.++...|++++|+..|+++++++|+ ..++..+|.++..+|++++|+..|+++++++|
T Consensus 84 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 84 VLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 55588999999999999999999999999999999999999999996 67888999999999999999999999999999
Q ss_pred CchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003249 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (836)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eA 623 (836)
++...+...+... . .......+...|.++ ..|++++|
T Consensus 164 ~~~~~~~~~~~~~---------~---------------------------------~~~~~~~~~~~~~~~-~~~~~~~A 200 (368)
T 1fch_A 164 AYAHLVTPAEEGA---------G---------------------------------GAGLGPSKRILGSLL-SDSLFLEV 200 (368)
T ss_dssp TTGGGCC---------------------------------------------------------CTTHHHH-HHHHHHHH
T ss_pred CcHHHHHHHHHHh---------h---------------------------------hhcccHHHHHHHHHh-hcccHHHH
Confidence 9876553221000 0 000011112223333 44555555
Q ss_pred HHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHH
Q 003249 624 MRSLQLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDA 701 (836)
Q Consensus 624 l~~~~~Al~l~P~--~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~A 701 (836)
+..|+++++++|+ ++.++..+|.++..+|++++|+..|+++++++|+.
T Consensus 201 ~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------ 250 (368)
T 1fch_A 201 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------------------------------ 250 (368)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------
T ss_pred HHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------------------------------
Confidence 5555555555555 55555555555555555555555555555544433
Q ss_pred hcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--chhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCC--
Q 003249 702 LKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN-- 777 (836)
Q Consensus 702 l~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~--~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~-- 777 (836)
+.+++++|.+|...|++++|+..|++++++. ...++.++|.++...|++++|+..|.++++++|++
T Consensus 251 ----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 251 ----------YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 2345555555555555555555555555542 24555555555555555555555555555555555
Q ss_pred ---------HHHHHHHH----HccCHHHHHHHHHHhHh
Q 003249 778 ---------ASAYEKRS----EYCDRELTRADLEMVTQ 802 (836)
Q Consensus 778 ---------a~Ay~~r~----~~~~~~~A~~D~~~Ai~ 802 (836)
+.+|..++ ..|++++|...+.++++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 55555553 23555555555555544
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=3e-28 Score=261.25 Aligned_cols=284 Identities=12% Similarity=0.025 Sum_probs=239.0
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCCh
Q 003249 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEG 461 (836)
Q Consensus 384 ~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~ 461 (836)
..+..+|..+...|++++|+..|+++++.+|. .++..++.++...|++
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~------------------------------ 72 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKA------------------------------ 72 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCH------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhH------------------------------
Confidence 35566777777778888888888887776544 3445555556555554
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g-~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
++|+..++++++++|+++.+|..+|.++...| ++++|+..|+++++++|+ ..++..+|.++..+|++++|+..|++++
T Consensus 73 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 152 (330)
T 3hym_B 73 NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAA 152 (330)
T ss_dssp HHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45555588888899999999999999999999 999999999999999996 6788889999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003249 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (836)
Q Consensus 540 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~ 619 (836)
+++|+.. ..++.+|.++...|+
T Consensus 153 ~~~~~~~----------------------------------------------------------~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 153 QLMKGCH----------------------------------------------------------LPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHTTTCS----------------------------------------------------------HHHHHHHHHHHHTTC
T ss_pred HhccccH----------------------------------------------------------HHHHHHHHHHHHHhh
Confidence 9888753 345667888999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHH
Q 003249 620 PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 699 (836)
Q Consensus 620 ~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~ 699 (836)
+++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++++.|... ++
T Consensus 175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--------------~~----------- 229 (330)
T 3hym_B 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG--------------NE----------- 229 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS--------------CS-----------
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc--------------cc-----------
Confidence 99999999999999999999999999999999999999999999998765431 00
Q ss_pred HHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 003249 700 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 777 (836)
Q Consensus 700 ~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~ 777 (836)
...+..+.++.++|.+|..+|++++|+..|++++++.|. .++.++|.++...|++++|+..|.++++++|++
T Consensus 230 ------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 230 ------VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp ------CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred ------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 000122468999999999999999999999999998654 789999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 003249 778 ASAYEKRSE 786 (836)
Q Consensus 778 a~Ay~~r~~ 786 (836)
+.++..++.
T Consensus 304 ~~~~~~l~~ 312 (330)
T 3hym_B 304 TFSVTMLGH 312 (330)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999998864
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=7.7e-29 Score=271.30 Aligned_cols=283 Identities=12% Similarity=0.024 Sum_probs=233.2
Q ss_pred hhHHH-HHHHHHhcCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 003249 462 DKRWE-DLDKATALDPTLS----YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDV 535 (836)
Q Consensus 462 ~eAi~-d~~kAi~ldP~~~----~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~ 535 (836)
++|+. .|++++++.|+++ ..++.+|.++...|++++|+..|+++++++|+ ..++..+|.++..+|++++|+..|
T Consensus 42 ~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 121 (368)
T 1fch_A 42 DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121 (368)
T ss_dssp ----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 78888 8999999999884 56999999999999999999999999999997 678889999999999999999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003249 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (836)
Q Consensus 536 ~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~ 615 (836)
+++++++|++..++..++ .++...++++.| +..+.+++..+|++...+...+....
T Consensus 122 ~~al~~~~~~~~~~~~l~------~~~~~~g~~~~A------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 1fch_A 122 RRCLELKPDNQTALMALA------VSFTNESLQRQA------------------CEILRDWLRYTPAYAHLVTPAEEGAG 177 (368)
T ss_dssp HHHHHHCTTCHHHHHHHH------HHHHHTTCHHHH------------------HHHHHHHHHTSTTTGGGCC-------
T ss_pred HHHHhcCCCCHHHHHHHH------HHHHHcCCHHHH------------------HHHHHHHHHhCcCcHHHHHHHHHHhh
Confidence 999999999977665543 334445555555 67788899999988877655433210
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHH
Q 003249 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 695 (836)
Q Consensus 616 ~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i 695 (836)
.......+..+|.++ .+|++++|+..|+++++++|+..
T Consensus 178 ------------------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~----------------------- 215 (368)
T 1fch_A 178 ------------------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI----------------------- 215 (368)
T ss_dssp --------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC-----------------------
T ss_pred ------------------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc-----------------------
Confidence 011123344677777 99999999999999999988730
Q ss_pred HHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHh
Q 003249 696 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKK 773 (836)
Q Consensus 696 ~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~ 773 (836)
.+.+++++|.+|...|++++|+..|++++++.|. .++.++|.++...|++++|+..|++++++
T Consensus 216 ---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 216 ---------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1468999999999999999999999999998764 68999999999999999999999999999
Q ss_pred cCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCC-----------cccchhhHHHHHHHhhhh
Q 003249 774 ARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLR-----------VYPYRYRAAGLIVFLNLH 825 (836)
Q Consensus 774 ~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~-----------~~~y~~r~~~~~~~~~~~ 825 (836)
+|+++.+|..++ ..|++++|+..|++|++++|+. ..+|...|.++...|+..
T Consensus 281 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 999999999986 4599999999999999999998 889999999999988754
No 20
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.96 E-value=6.3e-29 Score=278.75 Aligned_cols=227 Identities=12% Similarity=0.063 Sum_probs=206.7
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQN-VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (836)
Q Consensus 461 ~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~-~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~a 538 (836)
.++|+..|++||+++|+++.+|++||.++..+|+ +++|+..|++||+++|+ ..+|++||.++..+|++++|+.+|+++
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka 192 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 192 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3778888999999999999999999999999997 99999999999999997 689999999999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003249 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (836)
Q Consensus 539 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~ 618 (836)
|+++|++ ..+|+++|.++..+|
T Consensus 193 l~ldP~~----------------------------------------------------------~~a~~~lg~~~~~~g 214 (382)
T 2h6f_A 193 LNQDAKN----------------------------------------------------------YHAWQHRQWVIQEFK 214 (382)
T ss_dssp HHHCTTC----------------------------------------------------------HHHHHHHHHHHHHHT
T ss_pred HHhCccC----------------------------------------------------------HHHHHHHHHHHHHcC
Confidence 9998876 356788999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcccchHHHHHHHHHhhccccCCCChh
Q 003249 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYD-TSHCEEG-----LRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~-~G~~eeA-----l~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~ 692 (836)
++++|++.|+++++++|+++.+|+++|.++.. .|++++| ++.|++||+++|++
T Consensus 215 ~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~--------------------- 273 (382)
T 2h6f_A 215 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN--------------------- 273 (382)
T ss_dssp CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC---------------------
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC---------------------
Confidence 99999999999999999999999999999999 6665888 58999999998877
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcC---------C
Q 003249 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG--QLDLAADCYSNALKIRHT--RAHQGLARVHFLKN---------N 759 (836)
Q Consensus 693 ~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g--~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g---------~ 759 (836)
..+|+++|.+|...| ++++|++.+.++ +++|. .++..+|.++..+| .
T Consensus 274 -------------------~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 274 -------------------ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp -------------------HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred -------------------HHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 468999999999988 699999999988 77554 68899999999985 2
Q ss_pred HHHHHHHHHHH-HHhcCCCHHHHHHHHH
Q 003249 760 KTTAYEEMTKL-IKKARNNASAYEKRSE 786 (836)
Q Consensus 760 ~~~A~~~~~ka-ie~~p~~a~Ay~~r~~ 786 (836)
+++|++.|+++ ++++|.+...|..++.
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 59999999999 9999999999999854
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=3.5e-25 Score=255.19 Aligned_cols=364 Identities=11% Similarity=-0.009 Sum_probs=302.5
Q ss_pred HHHHHHHHHHHHhh----ccchHHHHHHHHHHHhccchhhHhhHHHHHHh----cCCHHHHHHHHHHhHhccCCchHHHH
Q 003249 382 RLLAFHQLGCVRLL----RKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLGWMYQ 453 (836)
Q Consensus 382 ~a~a~~~lG~~~~~----~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~----~G~~~~A~~~~~~ai~~~~~~~~ay~ 453 (836)
.+.+++.+|..+.. .+++++|+.+|++|++.++..++..+|.+|.. .+++.+|+.+|.+++.... +.++.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~ 115 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL--PQAQQ 115 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHH
Confidence 45789999999998 89999999999999999999999999999998 8999999999999987643 33333
Q ss_pred Hhhh--------cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 003249 454 ERSL--------YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCF 521 (836)
Q Consensus 454 ~r~~--------~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~----~g~~~eAi~~~~kai~l~P~~~~~~~rg~~ 521 (836)
..|. ..+.++|+..|++|.+. +++.+++++|.+|.. .+++++|+..|+++++.+ ++.+++++|.+
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-NVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 3332 23558999999999875 689999999999998 899999999999999874 57888999999
Q ss_pred HHh----cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHH----hhhHhHHHHHHhhhhccCcccccchHHHH
Q 003249 522 FLA----LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (836)
Q Consensus 522 ~~~----lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~----~~~~~~a~~~~~~~~~~~~~~~~~aL~~~ 593 (836)
|.. .+++++|+..|+++++..+ +.++..++ .++.. .+++++ ++..+
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg------~~y~~g~g~~~~~~~------------------A~~~~ 246 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSGD--ELGQLHLA------DMYYFGIGVTQDYTQ------------------SRVLF 246 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHH------HHHHHTSSSCCCHHH------------------HHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH------HHHHcCCCCCCCHHH------------------HHHHH
Confidence 998 9999999999999998753 33333322 22221 222333 46667
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 003249 594 YQMLESDAPKGVLYFRQSLLLLR----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-----SHCEEGLRKAEES 664 (836)
Q Consensus 594 ~~al~~~P~~~~~~~~~gl~l~~----l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~-----G~~eeAl~~~~~A 664 (836)
.++++. +++.+++++|.++.. .+++++|+..|+++.+. +++++++.+|.++... +++++|+..|++|
T Consensus 247 ~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a 322 (490)
T 2xm6_A 247 SQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322 (490)
T ss_dssp HHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 777765 678999999999999 99999999999999876 6899999999999998 9999999999999
Q ss_pred HhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHc
Q 003249 665 IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALK 740 (836)
Q Consensus 665 i~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~----~g~~deAi~~y~kAL~ 740 (836)
++..+. .++++.+..+...+ .+.+...++..+++|++. ..+.+++++|.+|.. .+++++|+..|++|++
T Consensus 323 ~~~~~~-~a~~~lg~~y~~~g-~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 323 AEQGDA-TAQANLGAIYFRLG-SEEEHKKAVEWFRKAAAK-----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHTTCH-HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HhcCCH-HHHHHHHHHHHhCC-CcccHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 987543 56777777665432 233567788889998875 236899999999999 8999999999999999
Q ss_pred CCchhHHhhHHHHHHh----cCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHc
Q 003249 741 IRHTRAHQGLARVHFL----KNNKTTAYEEMTKLIKKARN---NASAYEKRSEY 787 (836)
Q Consensus 741 l~~~~A~~~la~~~~~----~g~~~~A~~~~~kaie~~p~---~a~Ay~~r~~~ 787 (836)
..+..++.++|.+|.. .+++++|+..|+++++..|+ ++.|..+.+.+
T Consensus 396 ~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 396 QGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 9999999999999998 89999999999999999955 88888887654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=4.7e-27 Score=258.16 Aligned_cols=250 Identities=14% Similarity=0.111 Sum_probs=174.8
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|+..|+++++++|+++.+|+++|.++...|++++|+..|+++++++|+ ..++.++|.+|..+|++++|+..|+++++
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 45555588999999999999999999999999999999999999999997 68889999999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~ 620 (836)
++|++...+...+ ..+..+...|.++...|++
T Consensus 162 ~~p~~~~~~~~~~------------------------------------------------~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 162 QNPKYKYLVKNKK------------------------------------------------GSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp HCHHHHCC-------------------------------------------------------------------CCHHH
T ss_pred hCccchHHHhhhc------------------------------------------------cchHHHHHHHHHHhhhhhH
Confidence 9998865432211 1123344556666667777
Q ss_pred HHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHH
Q 003249 621 EAAMRSLQLARQHAAS--DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 698 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~--~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l 698 (836)
++|+..|+++++++|+ ++.+++++|.++..+|++++|++.|+++++++|++
T Consensus 194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------- 246 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED--------------------------- 246 (365)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------------------
T ss_pred HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------------------
Confidence 7777777777777777 67777777777777777777777777777665543
Q ss_pred HHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 003249 699 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (836)
Q Consensus 699 ~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~ 776 (836)
+.+|+++|.+|..+|++++|+..|++|+++.|. .++.++|.++...|++++|+..|.++++++|+
T Consensus 247 -------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 247 -------------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 345667777777777777777777777766543 56677777777777777777777777777666
Q ss_pred ------------CHHHHHHHH----HccCHHHHHHHHHH
Q 003249 777 ------------NASAYEKRS----EYCDRELTRADLEM 799 (836)
Q Consensus 777 ------------~a~Ay~~r~----~~~~~~~A~~D~~~ 799 (836)
++.+|..++ ..|+.+.|..-..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 314 SRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp C------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred cCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 244555553 23555555544443
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=1.5e-27 Score=262.06 Aligned_cols=266 Identities=11% Similarity=0.031 Sum_probs=224.7
Q ss_pred HHHHHHHHHhcCCCChHH----HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 464 RWEDLDKATALDPTLSYP----YMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (836)
Q Consensus 464 Ai~d~~kAi~ldP~~~~a----y~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~a 538 (836)
++..+.++....|+++.. |+.+|.++...|++++|+..|+++++++|+ ..+++.+|.++..+|++++|+..|+++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (365)
T 4eqf_A 46 TVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125 (365)
T ss_dssp -------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344566666777766644 999999999999999999999999999997 678999999999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003249 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (836)
Q Consensus 539 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~ 618 (836)
++++|++ +.+|+++|.++..+|
T Consensus 126 l~~~p~~----------------------------------------------------------~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 126 LELQPNN----------------------------------------------------------LKALMALAVSYTNTS 147 (365)
T ss_dssp HHHCTTC----------------------------------------------------------HHHHHHHHHHHHHTT
T ss_pred HhcCCCC----------------------------------------------------------HHHHHHHHHHHHccc
Confidence 9988876 345677888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHH----------HHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCC
Q 003249 619 CPEAAMRSLQLARQHAASDHERLVYE----------GWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDS 688 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l~P~~~eal~~~----------G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~ 688 (836)
++++|+..|+++++++|+++.++..+ |.++..+|++++|+..|+++++++|+..
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------- 211 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI---------------- 211 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC----------------
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc----------------
Confidence 99999999999999999988887766 9999999999999999999999877620
Q ss_pred CChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHH
Q 003249 689 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEE 766 (836)
Q Consensus 689 ~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~ 766 (836)
.+.+++++|.+|..+|++++|+..|++++++.|. .++.++|.++...|++++|+..
T Consensus 212 ----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (365)
T 4eqf_A 212 ----------------------DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA 269 (365)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1468999999999999999999999999998764 6899999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCC------------CcccchhhHHHHHHHhhhh
Q 003249 767 MTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPL------------RVYPYRYRAAGLIVFLNLH 825 (836)
Q Consensus 767 ~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~------------~~~~y~~r~~~~~~~~~~~ 825 (836)
|+++++++|+++.+|.+++ ..|++++|+..|++|++++|+ ....+...|.++..+|...
T Consensus 270 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 270 YTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 9999999999999999996 459999999999999999998 4667888888888887654
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=2.6e-26 Score=236.09 Aligned_cols=196 Identities=17% Similarity=0.107 Sum_probs=146.8
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 003249 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (836)
Q Consensus 476 P~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~ 554 (836)
|+++.+++++|.++...|++++|+..|+++|+++|+ +.+++++|.++..+|++++|+..|+++++++|++..++..++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg- 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS- 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-
Confidence 889999999999999999999999999999999997 688999999999999999999999999999999865544333
Q ss_pred HHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CCHHHH
Q 003249 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL-----------NCPEAA 623 (836)
Q Consensus 555 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l-----------~~~~eA 623 (836)
.++..+ |++++|
T Consensus 81 ---------------------------------------------------------~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 81 ---------------------------------------------------------EAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp ---------------------------------------------------------HHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HHHHHhhhhhhhhcccccCHHHH
Confidence 333333 777888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhc
Q 003249 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (836)
Q Consensus 624 l~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~ 703 (836)
+..|+++++++|+++++++++|.++..+|++++|++.|+++++++ ++
T Consensus 104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-------------------------------- 150 (217)
T 2pl2_A 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT-------------------------------- 150 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC--------------------------------
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc--------------------------------
Confidence 888888888888888888888888888888888888888887764 32
Q ss_pred CCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHH
Q 003249 704 CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 770 (836)
Q Consensus 704 ~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~ka 770 (836)
+.++.++|.+|..+|++++|+..|+++++++|. .++.++|.++...|++++|++.|+++
T Consensus 151 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 151 --------PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp --------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred --------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 356777888888888888888888888777654 56777777888888887777777654
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=8.6e-26 Score=241.78 Aligned_cols=260 Identities=13% Similarity=0.072 Sum_probs=165.1
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+ ..++..+|.++..+|++++|+..|+++++
T Consensus 38 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 117 (327)
T 3cv0_A 38 AEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 117 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55566688899999999999999999999999999999999999999996 67888899999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHH-HH-HHHHcC
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ-SL-LLLRLN 618 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~-gl-~l~~l~ 618 (836)
++|++...+..... ..|.....+ .. |. ++...|
T Consensus 118 ~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~-~~~~~~~~~~~~ 152 (327)
T 3cv0_A 118 SQPQYEQLGSVNLQ--------------------------------------------ADVDIDDLN-VQSEDFFFAAPN 152 (327)
T ss_dssp TSTTTTTC-----------------------------------------------------------------CCTTSHH
T ss_pred hCCccHHHHHHHhH--------------------------------------------HHHHHHHHH-HHHHhHHHHHcc
Confidence 99998654432100 001001111 11 11 234455
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHH
Q 003249 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 698 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l 698 (836)
++++|+..++++++.+|+++.++..+|.++..+|++++|+..|++++++.|+.
T Consensus 153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--------------------------- 205 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD--------------------------- 205 (327)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------
T ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------------------
Confidence 55555555555555555555555555555555555555555555555544432
Q ss_pred HHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 003249 699 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (836)
Q Consensus 699 ~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~ 776 (836)
+.++.++|.+|...|++++|+..|++++++.|. .++.++|.++...|++++|+..|.+++++.|+
T Consensus 206 -------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 206 -------------AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 234555555555555555555555555555432 45555555555555555555555555555555
Q ss_pred ------------CHHHHHHHH----HccCHHHHHHHHHHhHhcCCC
Q 003249 777 ------------NASAYEKRS----EYCDRELTRADLEMVTQLDPL 806 (836)
Q Consensus 777 ------------~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~ 806 (836)
++.+|..++ ..|+.++|...+++++++.|+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 273 GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp SCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred cccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 455555543 235555565555555555443
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=1.2e-25 Score=235.39 Aligned_cols=228 Identities=13% Similarity=0.048 Sum_probs=181.8
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----ECLELRFCFFLALEDYQAALCDVQA 537 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~----~~~~~rg~~~~~lg~~~~Ai~d~~~ 537 (836)
++|+..|+++++++|+++.+|..+|.++...|++++|+..|+++++..+++ .++..+|.++..+|++++|+..|++
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 99 (272)
T 3u4t_A 20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQA 99 (272)
T ss_dssp HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 445555777777888888888888888888888888888888888733232 3367778888888888888888888
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003249 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (836)
Q Consensus 538 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l 617 (836)
+++++|++ +.+|..+|.++..+
T Consensus 100 a~~~~~~~----------------------------------------------------------~~~~~~l~~~~~~~ 121 (272)
T 3u4t_A 100 AVDRDTTR----------------------------------------------------------LDMYGQIGSYFYNK 121 (272)
T ss_dssp HHHHSTTC----------------------------------------------------------THHHHHHHHHHHHT
T ss_pred HHhcCccc----------------------------------------------------------HHHHHHHHHHHHHc
Confidence 88777665 34567778888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHH
Q 003249 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 697 (836)
Q Consensus 618 ~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~ 697 (836)
|++++|+..|+++++++|+++.+++++|...+..+++++|++.|+++++++|++
T Consensus 122 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------------------------- 175 (272)
T 3u4t_A 122 GNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------------------------- 175 (272)
T ss_dssp TCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------------------
T ss_pred cCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--------------------------
Confidence 999999999999999999999999999955555669999999999999887765
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCC---ch-------hHHhhHHHHHHhcCCHHHHH
Q 003249 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQ---LDLAADCYSNALKIR---HT-------RAHQGLARVHFLKNNKTTAY 764 (836)
Q Consensus 698 l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~---~deAi~~y~kAL~l~---~~-------~A~~~la~~~~~~g~~~~A~ 764 (836)
..++.++|.++...|+ +++|+..|++|+++. +. .++..+|.++..+|++++|+
T Consensus 176 --------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 176 --------------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp --------------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3578888888888888 888999999998873 33 57888999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHc
Q 003249 765 EEMTKLIKKARNNASAYEKRSEY 787 (836)
Q Consensus 765 ~~~~kaie~~p~~a~Ay~~r~~~ 787 (836)
+.|+++++++|+++.|+...+..
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHhcCccHHHHHHHhhhh
Confidence 99999999999999998876543
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=3.3e-25 Score=237.25 Aligned_cols=279 Identities=16% Similarity=0.095 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcC
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~ 459 (836)
.+..++.+|..+...|++++|+..|+++++..|. .++..+|.++...|++++|+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----------------------- 76 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAII----------------------- 76 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-----------------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-----------------------
Confidence 3456788999999999999999999999987654 466777777777777655544
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHH--------------HH-HHH
Q 003249 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-ECLELR--------------FC-FFL 523 (836)
Q Consensus 460 ~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~r--------------g~-~~~ 523 (836)
.|+++++++|++..+|..+|.++...|++++|+..|+++++.+|+. ..+..+ |. ++.
T Consensus 77 -------~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 77 -------ALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp -------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTT
T ss_pred -------HHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 4777788888888888888888888888888888888888888863 444444 44 577
Q ss_pred hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCC
Q 003249 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (836)
Q Consensus 524 ~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~ 603 (836)
..|++++|+..|+++++++|++...+..++ .++...++++.| +..+.++++.+|++
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la------~~~~~~~~~~~A------------------~~~~~~~~~~~~~~ 205 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPNDAQLHASLG------VLYNLSNNYDSA------------------AANLRRAVELRPDD 205 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHH------HHHHHTTCHHHH------------------HHHHHHHHHHCTTC
T ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHH------HHHHHhccHHHH------------------HHHHHHHHHhCCCc
Confidence 888888888888888888888765444332 233344455444 66777888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhc
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~ 683 (836)
+.++..+|.++...|++++|+..|+++++++|+++.++..+|.++..+|++++|+..|++++++.|+...
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---------- 275 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT---------- 275 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998876310
Q ss_pred cccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003249 684 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (836)
Q Consensus 684 ~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~ 742 (836)
+... ........+|.++|.+|..+|++++|...|++++++-
T Consensus 276 ----~~~~--------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 276 ----PTGE--------------ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp -----------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred ----cccc--------------chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 0000 0000025789999999999999999999999988763
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=3e-23 Score=239.11 Aligned_cols=378 Identities=11% Similarity=-0.042 Sum_probs=308.9
Q ss_pred HHHHHHHHHHHhccchhhHhhHHHHHHh----cCCHHHHHHHHHHhHhccCCchHHHHHhhh--------cCChhhHHHH
Q 003249 400 DEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLGWMYQERSL--------YCEGDKRWED 467 (836)
Q Consensus 400 ~eAi~~f~~Al~l~~~~a~~~la~~~~~----~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~--------~~~~~eAi~d 467 (836)
..++..++++.+.++..++..+|.+|.. .+++.+|+..+.+++... .+.++...|. ..+.++|+..
T Consensus 24 ~~~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 24 NVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp -CCHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 3356778888888888999999999988 899999999999998873 3444444442 2345899999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 003249 468 LDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAIL 539 (836)
Q Consensus 468 ~~kAi~ldP~~~~ay~~rg~~l~~----~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~----lg~~~~Ai~d~~~al 539 (836)
|.+|.+. .++.+++++|.++.. .+++++|+..|+++++.+ ++.+++++|.+|.. .+++++|+..|++++
T Consensus 102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 9999875 589999999999999 899999999999999864 57888999999998 899999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHH----hhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003249 540 TLSPDYRMFEGRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (836)
Q Consensus 540 ~l~P~~~~~~~~~~~~~~~~~l~~~----~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~ 615 (836)
+.. ++.++..++ .++.. .+.+++ ++..+.++++. +++.+++.+|.++.
T Consensus 179 ~~~--~~~a~~~Lg------~~y~~g~g~~~~~~~------------------A~~~~~~a~~~--~~~~a~~~lg~~y~ 230 (490)
T 2xm6_A 179 EQG--NVWSCNQLG------YMYSRGLGVERNDAI------------------SAQWYRKSATS--GDELGQLHLADMYY 230 (490)
T ss_dssp HTT--CHHHHHHHH------HHHHHTSSSCCCHHH------------------HHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HCC--CHHHHHHHH------HHHhcCCCCCcCHHH------------------HHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 873 444444333 22222 223333 46677777765 67899999999999
Q ss_pred H----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcccchHHHHHHHHHhhcc-cc
Q 003249 616 R----LNCPEAAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS-SQ 686 (836)
Q Consensus 616 ~----l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~----~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~-~l 686 (836)
. .+++++|+..|+++++. .++++++++|.++.. .+++++|+..|++|++.. +..+.+..+..+... .-
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHCBTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCC
Confidence 7 89999999999999876 678999999999999 999999999999999864 235677777766553 22
Q ss_pred CCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCchhHHhhHHHHHHh----cCC
Q 003249 687 DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG---QLDLAADCYSNALKIRHTRAHQGLARVHFL----KNN 759 (836)
Q Consensus 687 ~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g---~~deAi~~y~kAL~l~~~~A~~~la~~~~~----~g~ 759 (836)
.+.+...++..+++|++.. .+.+++++|.+|...| ++++|+..|++|++.++..++.++|.+|.. .++
T Consensus 308 ~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG-----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC
Confidence 3467788899999998752 3579999999999877 899999999999999999999999999999 899
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHH--------ccCHHHHHHHHHHhHhcCCC---CcccchhhHHHHHH
Q 003249 760 KTTAYEEMTKLIKKARNNASAYEKRSE--------YCDRELTRADLEMVTQLDPL---RVYPYRYRAAGLIV 820 (836)
Q Consensus 760 ~~~A~~~~~kaie~~p~~a~Ay~~r~~--------~~~~~~A~~D~~~Ai~l~P~---~~~~y~~r~~~~~~ 820 (836)
+++|+..|+++++. +++.|+++.+. .+|+++|+..|++|++++|+ .+.+..+-|.++..
T Consensus 383 ~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999986 57899888852 47999999999999999955 67666665554443
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=3.4e-25 Score=227.78 Aligned_cols=179 Identities=16% Similarity=0.093 Sum_probs=150.9
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhc-----------CCHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLAL-----------EDYQ 529 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~l-----------g~~~ 529 (836)
++|+..|++|++++|+++.+|+++|.++..+|++++|+..|+++++++|+ ..+++++|.++..+ |+++
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~ 101 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE 101 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence 56666699999999999999999999999999999999999999999997 68899999999999 8888
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHH
Q 003249 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (836)
Q Consensus 530 ~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~ 609 (836)
+|+..|+++++++|++ +.+|++
T Consensus 102 ~A~~~~~~al~~~P~~----------------------------------------------------------~~~~~~ 123 (217)
T 2pl2_A 102 QALSVLKDAERVNPRY----------------------------------------------------------APLHLQ 123 (217)
T ss_dssp HHHHHHHHHHHHCTTC----------------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHhCccc----------------------------------------------------------HHHHHH
Confidence 8888888888887766 456778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCC
Q 003249 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSS 689 (836)
Q Consensus 610 ~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~ 689 (836)
+|.++..+|++++|++.|++|++++ +++++++++|.++..+|++++|+..|+++++++|++
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~------------------ 184 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD------------------ 184 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------------------
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------
Confidence 8999999999999999999999999 999999999999999999999999999999988876
Q ss_pred ChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 690 CSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNAL 739 (836)
Q Consensus 690 ~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL 739 (836)
+.++.++|.++..+|++++|++.|+++-
T Consensus 185 ----------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 185 ----------------------LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ----------------------HHHHHHHHHHHTC---------------
T ss_pred ----------------------hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 4688999999999999999999998864
No 30
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.93 E-value=4.3e-25 Score=231.32 Aligned_cols=248 Identities=16% Similarity=0.119 Sum_probs=213.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~ 556 (836)
++..++.+|.++...|++++|+..|+++++.+|+ ..++..+|.++..+|++++|+..|+++++ .|++..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~--------- 71 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK--------- 71 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT---------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh---------
Confidence 4567899999999999999999999999999997 56899999999999999999999999999 564421
Q ss_pred HHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003249 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (836)
Q Consensus 557 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~ 636 (836)
..+.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 72 ---------------------------------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 72 ---------------------------------------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106 (272)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence 12567889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHH
Q 003249 637 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 716 (836)
Q Consensus 637 ~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~ 716 (836)
+++++..+|.++..+|++++|+..|+++++++|.. +.++.
T Consensus 107 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----------------------------------------~~~~~ 146 (272)
T 3u4t_A 107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD----------------------------------------PKVFY 146 (272)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC----------------------------------------HHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc----------------------------------------HHHHH
Confidence 99999999999999999999999999999887765 46789
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCC---HHHHHHHHHHHHHhc---CC-----CHHHHH
Q 003249 717 NLG-SVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNN---KTTAYEEMTKLIKKA---RN-----NASAYE 782 (836)
Q Consensus 717 nlG-~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~---~~~A~~~~~kaie~~---p~-----~a~Ay~ 782 (836)
++| .+|.. +++++|+.+|++++++.|. .++.++|.++...|+ +++|+..|++++++. |+ .+.+|.
T Consensus 147 ~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (272)
T 3u4t_A 147 ELGQAYYYN-KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225 (272)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 999 55554 5999999999999998765 789999999999999 999999999999886 55 346787
Q ss_pred HHHH----ccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHH
Q 003249 783 KRSE----YCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVF 821 (836)
Q Consensus 783 ~r~~----~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~ 821 (836)
.++. .|++++|+..|++|++++|++..+...-+.+.-..
T Consensus 226 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 226 YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 7754 59999999999999999999998887766655443
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.3e-24 Score=222.57 Aligned_cols=227 Identities=13% Similarity=0.062 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc-chhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcC
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG-HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~-~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~ 459 (836)
+.+.+++.+|.++...|++++|+..|+++++.+ ...++..+|.++...|++++|+..
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~---------------------- 60 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAIST---------------------- 60 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHH----------------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHH----------------------
Confidence 467899999999999999999999999999875 345778888888888887666666
Q ss_pred ChhhHHHHHHHHHhcCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHH
Q 003249 460 EGDKRWEDLDKATALDPTL-------SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAAL 532 (836)
Q Consensus 460 ~~~eAi~d~~kAi~ldP~~-------~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai 532 (836)
|+++++++|++ +.+|..+|.++...|++++|+..|+++++++|+. .++..+|++++|+
T Consensus 61 --------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 61 --------LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKEL 125 (258)
T ss_dssp --------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHH
T ss_pred --------HHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHH
Confidence 55566666655 6889999999999999999999999999998874 3466677788888
Q ss_pred HHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHH
Q 003249 533 CDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSL 612 (836)
Q Consensus 533 ~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl 612 (836)
..+++++..+|+. +.+++.+|.
T Consensus 126 ~~~~~~~~~~~~~----------------------------------------------------------~~~~~~~~~ 147 (258)
T 3uq3_A 126 KKAEAEAYVNPEK----------------------------------------------------------AEEARLEGK 147 (258)
T ss_dssp HHHHHHHHCCHHH----------------------------------------------------------HHHHHHHHH
T ss_pred HHHHHHHHcCcch----------------------------------------------------------HHHHHHHHH
Confidence 8888888776654 345677788
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChh
Q 003249 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (836)
Q Consensus 613 ~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~ 692 (836)
++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------------- 206 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--------------------- 206 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH---------------------
Confidence 88889999999999999999999999999999999999999999999999998877654
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003249 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (836)
Q Consensus 693 ~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~ 742 (836)
+.+|.++|.+|..+|++++|+..|++|+++.
T Consensus 207 -------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 207 -------------------VRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 3578888888888899999888888888876
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-24 Score=224.74 Aligned_cols=238 Identities=14% Similarity=0.100 Sum_probs=195.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 003249 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (836)
Q Consensus 477 ~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~ 556 (836)
+.+..|..+|.++...|++++|+..|++++++++++.++..+|.++..+|++++|+..|+++++++|++...+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------- 75 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY------- 75 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH-------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch-------
Confidence 4568899999999999999999999999999995578899999999999999999999999999988652100
Q ss_pred HHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003249 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (836)
Q Consensus 557 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~ 636 (836)
|..+.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 76 --------------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 111 (258)
T 3uq3_A 76 --------------------------------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111 (258)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch
Confidence 011456778888888888888888888888888887
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHH
Q 003249 637 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 716 (836)
Q Consensus 637 ~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~ 716 (836)
+.++..+|++++|+..+++++.++|.. +.++.
T Consensus 112 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------------------------------~~~~~ 143 (258)
T 3uq3_A 112 --------ADILTKLRNAEKELKKAEAEAYVNPEK----------------------------------------AEEAR 143 (258)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHCCHHH----------------------------------------HHHHH
T ss_pred --------hHHHHHHhHHHHHHHHHHHHHHcCcch----------------------------------------HHHHH
Confidence 567777888888888888888776544 45788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCH
Q 003249 717 NLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDR 790 (836)
Q Consensus 717 nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~ 790 (836)
++|.+|...|++++|+..|++++++.|. .++.++|.++...|++++|+..++++++++|+++.+|..++ ..|++
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH
Confidence 8888888888888888888888887653 67888888888888888888888888888888888888875 34888
Q ss_pred HHHHHHHHHhHhcC------CCCcccchh
Q 003249 791 ELTRADLEMVTQLD------PLRVYPYRY 813 (836)
Q Consensus 791 ~~A~~D~~~Ai~l~------P~~~~~y~~ 813 (836)
++|+..|++|++++ |+....+..
T Consensus 224 ~~A~~~~~~a~~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 224 ASALETLDAARTKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence 88888888888888 665554443
No 33
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=5.8e-25 Score=242.75 Aligned_cols=314 Identities=17% Similarity=0.051 Sum_probs=240.8
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccch------hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhh
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS 456 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~------~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~ 456 (836)
+.++..+|.++...|++++|+.+|++++++.|. .++..+|.++...|++++|+..+.+++...+.
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------- 79 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART--------- 79 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---------
Confidence 467889999999999999999999999998654 36778899999999988888887666543211
Q ss_pred hcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHhcCC--
Q 003249 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALED-- 527 (836)
Q Consensus 457 ~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-------~~~~~~rg~~~~~lg~-- 527 (836)
+.-.|..+.+|.++|.++...|++++|+..|.+++++.|. ..++.++|.+|..+|+
T Consensus 80 ---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 80 ---------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcc
Confidence 1113455778999999999999999999999999998773 2367789999999999
Q ss_pred ------------------HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccch
Q 003249 528 ------------------YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (836)
Q Consensus 528 ------------------~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~a 589 (836)
+++|+..|++++++.+..
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~-------------------------------------------- 180 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL-------------------------------------------- 180 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--------------------------------------------
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--------------------------------------------
Confidence 888888888887763221
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLVYEGWILYDTSHCEEGLRKAEE 663 (836)
Q Consensus 590 L~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e------al~~~G~il~~~G~~eeAl~~~~~ 663 (836)
...|..+.++.++|.++..+|++++|+..+++++++.|.... ++.++|.++..+|++++|+..|++
T Consensus 181 --------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 181 --------GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 011223567889999999999999999999999998777655 999999999999999999999999
Q ss_pred HHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc
Q 003249 664 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (836)
Q Consensus 664 Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~ 743 (836)
++++.|... +....+.++.++|.+|...|++++|+..|++|+++.+
T Consensus 253 al~~~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 253 TLLLARQLK----------------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHTT----------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCc----------------------------------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 998765431 0111256899999999999999999999999998732
Q ss_pred --------hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHc----cCHHH-HHHHHHHhHhcC
Q 003249 744 --------TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARN------NASAYEKRSEY----CDREL-TRADLEMVTQLD 804 (836)
Q Consensus 744 --------~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~------~a~Ay~~r~~~----~~~~~-A~~D~~~Ai~l~ 804 (836)
..++.++|.++...|++++|+..|.+++++.+. .+.++..++.. |+... +.........++
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 378 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEID 378 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC------------
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999988433 36667666432 44433 333333444444
Q ss_pred CC
Q 003249 805 PL 806 (836)
Q Consensus 805 P~ 806 (836)
+.
T Consensus 379 ~~ 380 (406)
T 3sf4_A 379 SS 380 (406)
T ss_dssp --
T ss_pred HH
Confidence 44
No 34
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=1.2e-24 Score=242.19 Aligned_cols=292 Identities=15% Similarity=0.047 Sum_probs=237.3
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch------hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHH
Q 003249 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ 453 (836)
Q Consensus 380 ~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~------~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~ 453 (836)
...+..++.+|..+...|++++|+..|++++++.+. .++..+|.++...|++++|+..+.+++....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------- 117 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK------- 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------
Confidence 345678889999999999999999999999998654 3677888888888888777777655543311
Q ss_pred HhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-hHHHHHHHHHHHhcC
Q 003249 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGF------KLA-LECLELRFCFFLALE 526 (836)
Q Consensus 454 ~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l------~P~-~~~~~~rg~~~~~lg 526 (836)
.+.-+|..+.+|.++|.++...|++++|+..|.+++++ .|. ..++.++|.+|..+|
T Consensus 118 -----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 118 -----------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp -----------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 01114666789999999999999999999999999998 333 356788999999999
Q ss_pred C-----------------HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccch
Q 003249 527 D-----------------YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (836)
Q Consensus 527 ~-----------------~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~a 589 (836)
+ +++|+..|++++++.+..
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~-------------------------------------------- 216 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL-------------------------------------------- 216 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--------------------------------------------
Confidence 9 788888777777663321
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLVYEGWILYDTSHCEEGLRKAEE 663 (836)
Q Consensus 590 L~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e------al~~~G~il~~~G~~eeAl~~~~~ 663 (836)
...|..+.++.++|.++..+|++++|+..+++++++.|.... ++.++|.++..+|++++|+..|++
T Consensus 217 --------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 217 --------GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 011233567889999999999999999999999999886554 899999999999999999999999
Q ss_pred HHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc
Q 003249 664 SIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (836)
Q Consensus 664 Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~ 743 (836)
++++.|... +......++.++|.+|...|++++|+..|++|+++.+
T Consensus 289 al~~~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 289 TLALAVELG----------------------------------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHHHHHHTT----------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC----------------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 998765431 0111246899999999999999999999999999732
Q ss_pred --------hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHH
Q 003249 744 --------TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY 781 (836)
Q Consensus 744 --------~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay 781 (836)
..++.++|.++...|++++|+..|++++++.+....-.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 380 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXXXX 380 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch
Confidence 24889999999999999999999999999988765443
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.92 E-value=5.2e-24 Score=210.97 Aligned_cols=178 Identities=18% Similarity=0.192 Sum_probs=158.6
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 003249 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (836)
Q Consensus 477 ~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~ 555 (836)
+++..|+++|.++..+|++++|+..|+++|+++|+ ..++..+|.+|..+|++++|+..+++++..+|++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 73 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--------- 73 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH---------
Confidence 56789999999999999999999999999999997 68899999999999999999999999998888763
Q ss_pred HHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003249 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (836)
Q Consensus 556 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P 635 (836)
.++...|.++...+++++|+..+.++++++|
T Consensus 74 -------------------------------------------------~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~ 104 (184)
T 3vtx_A 74 -------------------------------------------------EAYYILGSANFMIDEKQAAIDALQRAIALNT 104 (184)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3455667778889999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHH
Q 003249 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL 715 (836)
Q Consensus 636 ~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~ 715 (836)
++++++..+|.++..+|++++|++.|+++++++|++ +.+|
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------------------------~~~~ 144 (184)
T 3vtx_A 105 VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----------------------------------------IRAY 144 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHH
T ss_pred cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh----------------------------------------hhHH
Confidence 999999999999999999999999999999888766 4688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHH
Q 003249 716 NNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLAR 752 (836)
Q Consensus 716 ~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~ 752 (836)
+++|.+|..+|++++|+.+|++||+++|..+++++|.
T Consensus 145 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~~lal 181 (184)
T 3vtx_A 145 QSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKYELAL 181 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHHCSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHHHHHh
Confidence 9999999999999999999999999999887777654
No 36
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=2.8e-22 Score=233.24 Aligned_cols=402 Identities=10% Similarity=-0.063 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhh--
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSL-- 457 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~-- 457 (836)
...++..++.. ...|++++|...|++|++..|. ..|...+......|++++|...|++++...|+ ...|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~-~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-IDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-HHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHH
Confidence 34577777774 6789999999999999998654 47888899999999999999999999999984 445444332
Q ss_pred ---cCChhhHHH----HHHHHHh---cCCCChHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCCh--H-HH
Q 003249 458 ---YCEGDKRWE----DLDKATA---LDPTLSYPYMYRASSLMT---------KQNVEAALAEINRILGFKLAL--E-CL 515 (836)
Q Consensus 458 ---~~~~~eAi~----d~~kAi~---ldP~~~~ay~~rg~~l~~---------~g~~~eAi~~~~kai~l~P~~--~-~~ 515 (836)
.+..++|.+ .|++|+. ++|++...|...+..... .|++++|+..|+++|+ .|.. . .|
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~ 168 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLW 168 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHH
Confidence 233355544 7888876 477888888888877665 7899999999999999 5753 2 22
Q ss_pred HHHHHHHH-------------hcCCHHHHHHHHHH------HHh-----hCCCchhhhhhHHHHHHHHHHHHHhhhHhHH
Q 003249 516 ELRFCFFL-------------ALEDYQAALCDVQA------ILT-----LSPDYRMFEGRVAASQLHMLVREHIDNWTIA 571 (836)
Q Consensus 516 ~~rg~~~~-------------~lg~~~~Ai~d~~~------al~-----l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a 571 (836)
.....+-. ..++|++|...|++ +++ +.|+....... ....|...
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~------------~~~~w~~~ 236 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ------------QVDMWKKY 236 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH------------HHHHHHHH
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH------------HHHHHHHH
Confidence 22222211 23567777766655 343 23332100000 01111111
Q ss_pred HHHHhhhhccCccccc-----chHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH
Q 003249 572 DCWLQLYDRWSSVDDI-----GSLSVIYQMLESDAPKGVLYFRQSLLLLR-------LNCPE-------AAMRSLQLARQ 632 (836)
Q Consensus 572 ~~~~~~~~~~~~~~~~-----~aL~~~~~al~~~P~~~~~~~~~gl~l~~-------l~~~~-------eAl~~~~~Al~ 632 (836)
..+..- .....++. .++..|.+++..+|+++.+|+..|..+.. .|+++ +|+..|++|++
T Consensus 237 ~~~e~~--~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 237 IQWEKS--NPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHH--CSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHc--CCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 111110 00112222 34678999999999999999999999986 79987 99999999997
Q ss_pred -cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH--HHHHHHHHhhccccCCCChhHHHHHHHHHhcCCcccc
Q 003249 633 -HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE--AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL 709 (836)
Q Consensus 633 -l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~--a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~ 709 (836)
++|+++.+|..+|.++..+|++++|.+.|+++++++|... ++...+..+...+ ....+...+++|++.++..
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~Al~~~~~~- 389 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE----GIKSGRMIFKKAREDARTR- 389 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTCTTCC-
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccCCc-
Confidence 8999999999999999999999999999999999988752 3333333222211 2344556666666654432
Q ss_pred chHHHHHHHHHH-HHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHH----HHH
Q 003249 710 RKGQALNNLGSV-YVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNAS----AYE 782 (836)
Q Consensus 710 ~~~~a~~nlG~~-y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~----Ay~ 782 (836)
...+...|.+ +...|++++|+..|++|+++.| ..++.+++.++...|+.++|...|.++++..|.++. .|.
T Consensus 390 --~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~ 467 (530)
T 2ooe_A 390 --HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 467 (530)
T ss_dssp --THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHH
T ss_pred --hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHH
Confidence 2233333322 2346666666666666666543 245566666666666666666666666666544332 332
Q ss_pred HH----HHccCHHHHHHHHHHhHhcCCCC
Q 003249 783 KR----SEYCDRELTRADLEMVTQLDPLR 807 (836)
Q Consensus 783 ~r----~~~~~~~~A~~D~~~Ai~l~P~~ 807 (836)
.- ...|+.+.+..-+.+|++..|..
T Consensus 468 ~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 468 RFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 21 23466666666666666666643
No 37
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.92 E-value=4.8e-24 Score=235.37 Aligned_cols=277 Identities=13% Similarity=0.078 Sum_probs=229.0
Q ss_pred hhHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC-hHHHHHHHHHHHhcCCHHH
Q 003249 462 DKRWEDLDKATALDPTL----SYPYMYRASSLMTKQNVEAALAEINRILGFK------LA-LECLELRFCFFLALEDYQA 530 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~----~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~------P~-~~~~~~rg~~~~~lg~~~~ 530 (836)
++|+..|+++++++|++ +.+|..+|.++...|++++|+..|++++++. |. ..++..+|.++..+|++++
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 105 (406)
T 3sf4_A 26 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 105 (406)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555577888888887 4689999999999999999999999999873 22 3567789999999999999
Q ss_pred HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHH
Q 003249 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (836)
Q Consensus 531 Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~ 610 (836)
|+..|++++++.|+.... +..+.++.++
T Consensus 106 A~~~~~~al~~~~~~~~~----------------------------------------------------~~~~~~~~~l 133 (406)
T 3sf4_A 106 AIVCCQRHLDISRELNDK----------------------------------------------------VGEARALYNL 133 (406)
T ss_dssp HHHHHHHHHHHHHHHTCH----------------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccc----------------------------------------------------cchHHHHHHH
Confidence 999999999987653210 0114567788
Q ss_pred HHHHHHcCC--------------------HHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 611 SLLLLRLNC--------------------PEAAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (836)
Q Consensus 611 gl~l~~l~~--------------------~~eAl~~~~~Al~l------~P~~~eal~~~G~il~~~G~~eeAl~~~~~A 664 (836)
|.++...|+ +++|+..+++++++ .|..+.++.++|.++..+|++++|+..|+++
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888888 99999999999987 5666789999999999999999999999999
Q ss_pred HhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc-
Q 003249 665 IQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH- 743 (836)
Q Consensus 665 i~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~- 743 (836)
+++.|... +....+.++.++|.+|...|++++|+..|++|+++.+
T Consensus 214 l~~~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 214 LLIAKEFG----------------------------------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp HHHHHHTT----------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC----------------------------------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 98765431 0111246899999999999999999999999998732
Q ss_pred -------hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCC------HHHHHHHH----HccCHHHHHHHHHHhHhc---
Q 003249 744 -------TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN------ASAYEKRS----EYCDRELTRADLEMVTQL--- 803 (836)
Q Consensus 744 -------~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~------a~Ay~~r~----~~~~~~~A~~D~~~Ai~l--- 803 (836)
..++.++|.++...|++++|+..|.+++++.++. +.+|..++ ..|++++|+..|++|+++
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999987655 67787775 359999999999999999
Q ss_pred ---CCCCcccchhhHHHHHHHhhh
Q 003249 804 ---DPLRVYPYRYRAAGLIVFLNL 824 (836)
Q Consensus 804 ---~P~~~~~y~~r~~~~~~~~~~ 824 (836)
.|....++...|.++...|+.
T Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 340 VGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCcchhHHHHHHHHHHHHhhHh
Confidence 445577888888888888865
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=1.8e-22 Score=217.62 Aligned_cols=215 Identities=14% Similarity=0.078 Sum_probs=123.6
Q ss_pred HhhccchHHHHHHHHHHHhccchh---hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc----CChhhHH
Q 003249 393 RLLRKEYDEAEHLFEAAVNAGHIY---SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY----CEGDKRW 465 (836)
Q Consensus 393 ~~~~g~y~eAi~~f~~Al~l~~~~---a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~----~~~~eAi 465 (836)
.+..|.|.+|+..+++.....|.. +...++++|..+|+++.|+..++.. .|+...++...+.+ ++.++|+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 466789999999988876665443 5567888999999988888765431 22222233222211 2235566
Q ss_pred HHHHHHHhc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003249 466 EDLDKATAL--DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-ALECLELRFCFFLALEDYQAALCDVQAILTLS 542 (836)
Q Consensus 466 ~d~~kAi~l--dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P-~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~ 542 (836)
..+++++.. +|+++.+++.+|.++...|++++|+..|++ | +.+++..+|.++..+|++++|+..|+++++++
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 666665543 466666666666666666666666666655 3 24555556666666666666666666666665
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 003249 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEA 622 (836)
Q Consensus 543 P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~e 622 (836)
|++.... -+.+|.+ ++...|++++
T Consensus 161 p~~~~~~-----------------------------------------------------l~~a~~~---l~~~~~~~~e 184 (291)
T 3mkr_A 161 EDATLTQ-----------------------------------------------------LATAWVS---LAAGGEKLQD 184 (291)
T ss_dssp TTCHHHH-----------------------------------------------------HHHHHHH---HHHCTTHHHH
T ss_pred cCcHHHH-----------------------------------------------------HHHHHHH---HHhCchHHHH
Confidence 5542100 0111211 1223455666
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 623 AMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 623 Al~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
|+..|+++++..|+++.+|+++|.++..+|++++|++.|+++++++|++
T Consensus 185 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 6666666666666666666666666666666666666666666555544
No 39
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.91 E-value=1.6e-24 Score=229.76 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=130.2
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCC--cCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN 253 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~--Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~ 253 (836)
..++.+|||+|+|||++|+|||.||+++|+||++||+++|. |+...+|+|+ ++++.+|+.+++|+|||++. ++.+
T Consensus 26 ~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~--~v~~~~f~~ll~~~Yt~~~~-i~~~ 102 (256)
T 3hve_A 26 REESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNED 102 (256)
T ss_dssp CC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----------CEEECS--SCCHHHHHHHHHHHHHSCCC-CC-C
T ss_pred HhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeC--CCCHHHHHHHHhhccCCCCc-ccHh
Confidence 67899999999999999999999999999999999999998 7788999999 69999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhccc--------CCChHHHH
Q 003249 254 LLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVV 325 (836)
Q Consensus 254 ~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~--------~l~~~~~~ 325 (836)
++.+|+.+|+++.++.|+..|...+...+ +.++++.++.+|..++...|...|.+++.+++.. .|+.+.+.
T Consensus 103 ~v~~ll~~A~~l~i~~l~~~c~~~L~~~l-~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~ 181 (256)
T 3hve_A 103 TIQDVVQAADLLLLTDLKTLCCEFLEGCI-AAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLK 181 (256)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHHTC-CSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHhhC-CHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHH
Confidence 99999999999999999999999998876 5679999999999999999999999998877643 46678888
Q ss_pred HHHhccccc
Q 003249 326 EIFSHANRQ 334 (836)
Q Consensus 326 ~ll~~~~~~ 334 (836)
++|++++..
T Consensus 182 ~lL~~d~L~ 190 (256)
T 3hve_A 182 EVISLEKLN 190 (256)
T ss_dssp HHHHCC---
T ss_pred HHHccCCCC
Confidence 899998754
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.91 E-value=3.6e-23 Score=216.30 Aligned_cols=236 Identities=11% Similarity=0.024 Sum_probs=188.1
Q ss_pred hhHHHHHHHHHhc----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 462 DKRWEDLDKATAL----DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 462 ~eAi~d~~kAi~l----dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
++|+..|+++++. +|+++.+|+.+|.++...|++++|+..|+++++++|+ ..++..+|.++..+|++++|+..|+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7888888888887 4667888999999999999999999999999999996 6788889999999999999999999
Q ss_pred HHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 003249 537 AILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR 616 (836)
Q Consensus 537 ~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~ 616 (836)
++++++|++. .+++.+|.++..
T Consensus 102 ~al~~~~~~~----------------------------------------------------------~~~~~la~~~~~ 123 (275)
T 1xnf_A 102 SVLELDPTYN----------------------------------------------------------YAHLNRGIALYY 123 (275)
T ss_dssp HHHHHCTTCT----------------------------------------------------------HHHHHHHHHHHH
T ss_pred HHHhcCcccc----------------------------------------------------------HHHHHHHHHHHH
Confidence 9998887653 456677888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHH
Q 003249 617 LNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVS 696 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~ 696 (836)
+|++++|+..|+++++++|+++......+.. ..+|++++|+..|++++...|...
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~------------------------ 178 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQ------------------------ 178 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCS------------------------
T ss_pred hccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcch------------------------
Confidence 9999999999999999999998877777655 566999999999988887665431
Q ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc------hhHHhhHHHHHHhcCCHHHHHHHHHHH
Q 003249 697 LLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH------TRAHQGLARVHFLKNNKTTAYEEMTKL 770 (836)
Q Consensus 697 ~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~------~~A~~~la~~~~~~g~~~~A~~~~~ka 770 (836)
. ..+++.++...++.++|+..++++++..+ ..++..+|.++...|++++|+..|+++
T Consensus 179 ----------------~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 179 ----------------W-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp ----------------T-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------H-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 23466677777888888888888888755 467788888888888888888888888
Q ss_pred HHhcCCCHHHHHH-HHHccCHHHHHHHH
Q 003249 771 IKKARNNASAYEK-RSEYCDRELTRADL 797 (836)
Q Consensus 771 ie~~p~~a~Ay~~-r~~~~~~~~A~~D~ 797 (836)
++++|++...+.. ...+|++++|+.+|
T Consensus 242 l~~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 242 VANNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred HhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 8888877555532 24567778888887
No 41
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.91 E-value=1.6e-24 Score=232.71 Aligned_cols=199 Identities=18% Similarity=0.256 Sum_probs=154.9
Q ss_pred CCCCccccEEEEeC---CeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCC----CCCHHHHHHHHHhhccCcCC
Q 003249 176 SGDQVLRNVVFRIH---EEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSEN----NISPSGLRIISDFSVTGSLN 248 (836)
Q Consensus 176 ~~~~~~~DV~~~v~---~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~----~is~~~~~~ll~f~Ytg~l~ 248 (836)
..++.+|||+|+|+ |++|+|||.||+++|+||++||+++|+|+.+.+|+|++. ++++.+|+.+++|+|||++.
T Consensus 27 ~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~ 106 (279)
T 3i3n_A 27 RRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIR 106 (279)
T ss_dssp HHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEE
T ss_pred HhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcc
Confidence 45788999999998 999999999999999999999999999999999999821 59999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhccc--------CCC
Q 003249 249 GVTPNLLLEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLN 320 (836)
Q Consensus 249 ~~~~~~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~--------~l~ 320 (836)
++.+++.+|+.+|+++.++.|+..|...+...+ +.++++.++..|..++...|...|.+++.+++.. .|+
T Consensus 107 -i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l-~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~ 184 (279)
T 3i3n_A 107 -VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKL-HLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLP 184 (279)
T ss_dssp -EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSC
T ss_pred -cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcC-CcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCC
Confidence 999999999999999999999999999998876 5689999999999999999999999998877543 456
Q ss_pred hHHHHHHHhccccc--------------------chh----hhhcccchh---HHHHHHHhhhccCCCChhHHH-HHHHh
Q 003249 321 DERVVEIFSHANRQ--------------------HRS----IMVGLASFS---LYCLLSEVAMNLDPRSDKTVC-FLERL 372 (836)
Q Consensus 321 ~~~~~~ll~~~~~~--------------------~r~----~~~~~~~~~---l~~lL~~V~~~~~~~s~~~v~-LLe~a 372 (836)
.+.+.++|++++.. .|. .+++++||+ +.++...|..+..++..+.|. ++.++
T Consensus 185 ~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~VRf~l~~~~~L~~~v~~~~l~~~~~~c~~~l~ea 264 (279)
T 3i3n_A 185 FHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADA 264 (279)
T ss_dssp HHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTTSCGGGSCHHHHHHTTTTSHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHhhccchhcCCHHHHHHHHHH
Confidence 67888888887632 111 235666765 355556665555444445555 55555
Q ss_pred hhhh
Q 003249 373 LESA 376 (836)
Q Consensus 373 ~~ca 376 (836)
.+++
T Consensus 265 ~~~~ 268 (279)
T 3i3n_A 265 VERH 268 (279)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=8e-22 Score=208.09 Aligned_cols=127 Identities=19% Similarity=0.121 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHh----cCCHHHHHHHHHHhHhccCCchHHHHHhhh
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYI----KGHKLWAYEKLNSVISSVTPLGWMYQERSL 457 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~----~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~ 457 (836)
.+.+++.+|..+...|++++|+.+|++|++.++..++..+|.++.. .|++++|+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~-------------------- 64 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASF-------------------- 64 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH--------------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHH--------------------
Confidence 3557777777777777777777777777665555555555555554 4443333332
Q ss_pred cCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----cCCHH
Q 003249 458 YCEGDKRWEDLDKATALDPTLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQ 529 (836)
Q Consensus 458 ~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~----~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~----lg~~~ 529 (836)
|++|++++ ++.+++++|.++.. .+++++|+..|+++++.+ ++.+++++|.+|.. .|+++
T Consensus 65 ----------~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 65 ----------YAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp ----------HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ----------HHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHH
Confidence 34444432 44555555555555 555555555555555543 34444555555555 55555
Q ss_pred HHHHHHHHHHhh
Q 003249 530 AALCDVQAILTL 541 (836)
Q Consensus 530 ~Ai~d~~~al~l 541 (836)
+|+..|++++++
T Consensus 132 ~A~~~~~~a~~~ 143 (273)
T 1ouv_A 132 KAVEYFTKACDL 143 (273)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 555555554443
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.90 E-value=1.3e-21 Score=206.42 Aligned_cols=235 Identities=12% Similarity=0.022 Sum_probs=117.0
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCchhhh
Q 003249 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLA----LEDYQAALCDVQAILTLSPDYRMFE 549 (836)
Q Consensus 475 dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~----lg~~~~Ai~d~~~al~l~P~~~~~~ 549 (836)
+|+++.+++.+|.++...|++++|+..|+++++ |+ +.+++++|.+|.. .|++++|+..|+++++++ ++.++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 455666666666666666666666666666665 32 3455556666666 666666666666666553 11111
Q ss_pred hhHHHHHHHHHHHHH----hhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHH
Q 003249 550 GRVAASQLHMLVREH----IDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR----LNCPE 621 (836)
Q Consensus 550 ~~~~~~~~~~~l~~~----~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~----l~~~~ 621 (836)
..++ .++.. .+.+++ ++..+.++++. +++.+++++|.++.. .++++
T Consensus 78 ~~lg------~~~~~g~~~~~~~~~------------------A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 78 HLLG------NLYYSGQGVSQNTNK------------------ALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp HHHH------HHHHHTSSSCCCHHH------------------HHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred HHHH------HHHhCCCCcccCHHH------------------HHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHH
Confidence 1000 00000 000000 01111111111 123344444445554 55555
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHH
Q 003249 622 AAMRSLQLARQHAASDHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 697 (836)
Q Consensus 622 eAl~~~~~Al~l~P~~~eal~~~G~il~~----~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~ 697 (836)
+|+..|+++++.+ ++.+++++|.++.. .|++++|+..|++++++.
T Consensus 132 ~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------------------- 180 (273)
T 1ouv_A 132 KAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----------------------------- 180 (273)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------------
T ss_pred HHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----------------------------
Confidence 5555555555543 34455555555554 555555555555554321
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCchhHHhhHHHHHHh----cCCHHHHHHHHHH
Q 003249 698 LEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTK 769 (836)
Q Consensus 698 l~~Al~~~~~~~~~~~a~~nlG~~y~~----~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~----~g~~~~A~~~~~k 769 (836)
.+.++.++|.+|.. .+++++|+..|++|+++++..++.++|.++.. .|++++|+..|++
T Consensus 181 -------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 181 -------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp -------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 02355566666666 66666666666666666666666666666666 6666666666666
Q ss_pred HHHhcCCCHHHHHH
Q 003249 770 LIKKARNNASAYEK 783 (836)
Q Consensus 770 aie~~p~~a~Ay~~ 783 (836)
++++.|+++..+..
T Consensus 248 a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 248 GCKLGAKGACDILK 261 (273)
T ss_dssp HHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 66666655544443
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.90 E-value=3.4e-22 Score=228.86 Aligned_cols=377 Identities=12% Similarity=-0.007 Sum_probs=264.9
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCH---HHHHHHHHHhHhccCCchHHHHHhhh-c----
Q 003249 387 HQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHK---LWAYEKLNSVISSVTPLGWMYQERSL-Y---- 458 (836)
Q Consensus 387 ~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~---~~A~~~~~~ai~~~~~~~~ay~~r~~-~---- 458 (836)
..+|..+...|++++|+.+|+++++.++..++..+|.++...|+. .+|+..|.+++..+ +.++...|. +
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~---~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTS---PRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCC---HHHHHHHHHHHHhCC
Confidence 457888999999999999999999999899999999999999998 89999999998773 333434333 1
Q ss_pred ----CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHhcCCH----
Q 003249 459 ----CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--ALECLELRFCFFLALEDY---- 528 (836)
Q Consensus 459 ----~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P--~~~~~~~rg~~~~~lg~~---- 528 (836)
.+.++|+..|.+|++. .++.+++++|.+|...++.++++..+.......+ ++.+.+++|.+|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 2347899999999984 5566999999999998876666555554444432 367788899999999854
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhh---hHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHH
Q 003249 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID---NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (836)
Q Consensus 529 ~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~---~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~ 605 (836)
++|...++++...+|+ ++..++ .++...+ ++++ ++..+.++.+..|..+.
T Consensus 162 ~~a~~~~~~a~~~~~~---a~~~Lg------~~~~~~g~~~~~~~------------------A~~~~~~aa~~g~~~a~ 214 (452)
T 3e4b_A 162 DDVERICKAALNTTDI---CYVELA------TVYQKKQQPEQQAE------------------LLKQMEAGVSRGTVTAQ 214 (452)
T ss_dssp HHHHHHHHHHTTTCTT---HHHHHH------HHHHHTTCHHHHHH------------------HHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHcCCHH---HHHHHH------HHHHHcCCcccHHH------------------HHHHHHHHHHCCCHHHH
Confidence 4455557777777776 333333 2222233 3333 46778899999999999
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcccchHHHHHHH
Q 003249 606 LYFRQSLLLLRL----NCPEAAMRSLQLARQHAASDHERLVYEGWI-L--YDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (836)
Q Consensus 606 ~~~~~gl~l~~l----~~~~eAl~~~~~Al~l~P~~~eal~~~G~i-l--~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a 678 (836)
.++++|.+|... +++++|+..|+++. |+++++++++|.+ + ...|++++|+..|++|++.. +..+.++.|
T Consensus 215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg 290 (452)
T 3e4b_A 215 RVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLG 290 (452)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHH
Confidence 999999999776 79999999999998 9999999999999 5 58999999999999999765 446778887
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCchhHHhhHHHHH
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVH 754 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~----~g~~deAi~~y~kAL~l~~~~A~~~la~~~ 754 (836)
..+....--+.+...++..|++|+ +. .+.+++++|.+|.. ..++++|+..|++|.+..+..|.+++|.+|
T Consensus 291 ~~y~~G~g~~~d~~~A~~~~~~Aa--~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 291 KLYYEGKWVPADAKAAEAHFEKAV--GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLF 364 (452)
T ss_dssp HHHHHCSSSCCCHHHHHHHHHTTT--TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHh--CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 776533233456777888888888 22 36899999999887 449999999999999998889999999998
Q ss_pred Hh----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHH-c---cCHHHHHHHHHHhHhcCC
Q 003249 755 FL----KNNKTTAYEEMTKLIKKARNNASAYEKRSE-Y---CDRELTRADLEMVTQLDP 805 (836)
Q Consensus 755 ~~----~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~-~---~~~~~A~~D~~~Ai~l~P 805 (836)
.. ..++++|+.-|++|.+..+..+.....+-. . .+.++|..-..+..+-+|
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~ 423 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAARG 423 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 75 458999999999998866544443333211 1 245566666655554443
No 45
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.90 E-value=7.1e-22 Score=202.70 Aligned_cols=210 Identities=10% Similarity=0.076 Sum_probs=163.3
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 003249 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL-A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (836)
Q Consensus 475 dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P-~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~ 552 (836)
.|.++..|+++|.++...|++++|+..|+++++++| . ..+++++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------- 75 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL------- 75 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH-------
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch-------
Confidence 356678899999999999999999999999999886 3 5677788999999999999999988888888775
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003249 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (836)
Q Consensus 553 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~ 632 (836)
+.+|+.+|.++..+|++++|+..|+++++
T Consensus 76 ---------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 104 (228)
T 4i17_A 76 ---------------------------------------------------ANAYIGKSAAYRDMKNNQEYIATLTEGIK 104 (228)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 24566778888888888999999999999
Q ss_pred cCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--hHHHHHHHHHhhccccCCCChhHHHHHHHHHhc
Q 003249 633 HAASDH-------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--FEAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (836)
Q Consensus 633 l~P~~~-------eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~--~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~ 703 (836)
++|+++ ++|+++|.++..+|++++|++.|+++++++|+ +
T Consensus 105 ~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------------------------- 152 (228)
T 4i17_A 105 AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-------------------------------- 152 (228)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH--------------------------------
T ss_pred HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc--------------------------------
Confidence 888888 66888888888888888888888888888776 4
Q ss_pred CCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 003249 704 CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEK 783 (836)
Q Consensus 704 ~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~ 783 (836)
+.+|.++|.+|..+| ...++++..+.+.......+......|.+++|+..|+++++++|++..+...
T Consensus 153 --------~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 219 (228)
T 4i17_A 153 --------TDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQM 219 (228)
T ss_dssp --------HHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --------HHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 357778888876554 3445667776544444445555666677777777777777777777777665
Q ss_pred HHHc
Q 003249 784 RSEY 787 (836)
Q Consensus 784 r~~~ 787 (836)
..++
T Consensus 220 l~~i 223 (228)
T 4i17_A 220 QDQV 223 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.90 E-value=3.1e-22 Score=209.24 Aligned_cols=249 Identities=12% Similarity=0.004 Sum_probs=202.0
Q ss_pred HHhhccchHHHHHHHHHHHhcc------chhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHH
Q 003249 392 VRLLRKEYDEAEHLFEAAVNAG------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRW 465 (836)
Q Consensus 392 ~~~~~g~y~eAi~~f~~Al~l~------~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi 465 (836)
.....|++++|+..|+++++.. ...++..+|.++...|++++ |+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------------------------A~ 63 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRAL------------------------------AR 63 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHH------------------------------HH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHH------------------------------HH
Confidence 3455688999999999999862 23467777888877777654 44
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003249 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPD 544 (836)
Q Consensus 466 ~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~ 544 (836)
..|+++++++|+++.+|.++|.++...|++++|+..|+++++++|+ ..++.++|.++..+|++++|+..|+++++++|+
T Consensus 64 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (275)
T 1xnf_A 64 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143 (275)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 5588899999999999999999999999999999999999999996 688999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003249 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM 624 (836)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl 624 (836)
+...... .+ +....|++++|+
T Consensus 144 ~~~~~~~----------------------------------------------------------~~-~~~~~~~~~~A~ 164 (275)
T 1xnf_A 144 DPFRSLW----------------------------------------------------------LY-LAEQKLDEKQAK 164 (275)
T ss_dssp CHHHHHH----------------------------------------------------------HH-HHHHHHCHHHHH
T ss_pred ChHHHHH----------------------------------------------------------HH-HHHHhcCHHHHH
Confidence 8531110 01 113457899999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcC
Q 003249 625 RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC 704 (836)
Q Consensus 625 ~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~ 704 (836)
..+++++...|++...+. ++.++...++.++|+..++++++..|...
T Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------- 211 (275)
T 1xnf_A 165 EVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-------------------------------- 211 (275)
T ss_dssp HHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH--------------------------------
T ss_pred HHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccccccc--------------------------------
Confidence 999999999999977765 77788888999999999999998765431
Q ss_pred CccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHHHHhcCCHHHHHHHH
Q 003249 705 PSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEM 767 (836)
Q Consensus 705 ~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~~g~~~~A~~~~ 767 (836)
+..+.++.++|.+|...|++++|+..|++|++++|.. ....+.++...|++++|++.+
T Consensus 212 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 ----EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHC----
T ss_pred ----ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhhHHHH
Confidence 1124689999999999999999999999999998753 334477888999999999887
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.90 E-value=1.2e-22 Score=226.16 Aligned_cols=260 Identities=16% Similarity=0.089 Sum_probs=215.1
Q ss_pred hhHHHHHHHHHhcCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-hHHHHHHHHHHHhcCCHHH
Q 003249 462 DKRWEDLDKATALDPTLS----YPYMYRASSLMTKQNVEAALAEINRILGF------KLA-LECLELRFCFFLALEDYQA 530 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~----~ay~~rg~~l~~~g~~~eAi~~~~kai~l------~P~-~~~~~~rg~~~~~lg~~~~ 530 (836)
++|+..|++|++++|++. .+|..+|.++...|++++|+..|++++++ +|. ..++..+|.+|..+|++++
T Consensus 65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 144 (411)
T 4a1s_A 65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDE 144 (411)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHH
Confidence 455555778888888876 58999999999999999999999999998 443 4678889999999999999
Q ss_pred HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHH
Q 003249 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (836)
Q Consensus 531 Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~ 610 (836)
|+..|++++++.+... ..|..+.++.++
T Consensus 145 A~~~~~~al~~~~~~~----------------------------------------------------~~~~~~~~~~~l 172 (411)
T 4a1s_A 145 AAICCERHLTLARQLG----------------------------------------------------DRLSEGRALYNL 172 (411)
T ss_dssp HHHHHHHHHHHHHHHT----------------------------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh----------------------------------------------------chHHHHHHHHHH
Confidence 9999999998743210 012235677888
Q ss_pred HHHHHHcCC-----------------HHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 611 SLLLLRLNC-----------------PEAAMRSLQLARQHA------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 611 gl~l~~l~~-----------------~~eAl~~~~~Al~l~------P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
|.++..+|+ +++|++.+++++++. |..+.++.++|.++..+|++++|+..|++++++
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888888888 999999999998864 455679999999999999999999999999987
Q ss_pred ccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc----
Q 003249 668 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH---- 743 (836)
Q Consensus 668 ~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~---- 743 (836)
.|... +......++.++|.+|..+|++++|+..|++|+++.+
T Consensus 253 ~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 253 AREFG----------------------------------DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHT----------------------------------CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcC----------------------------------CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 65431 0011145899999999999999999999999999743
Q ss_pred ----hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCC------HHHHHHHH----HccCHHHHHHHHHHhHhcCCCC
Q 003249 744 ----TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN------ASAYEKRS----EYCDRELTRADLEMVTQLDPLR 807 (836)
Q Consensus 744 ----~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~------a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~ 807 (836)
..++.++|.++...|++++|+..+++++++.++. +.+|..++ ..|++++|+..|++|+++.+..
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 3688999999999999999999999999886543 55777775 4599999999999999998754
No 48
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.90 E-value=1.2e-22 Score=216.59 Aligned_cols=264 Identities=16% Similarity=0.053 Sum_probs=197.0
Q ss_pred hhHHHHHHHHHhcCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CC-hHHHHHHHHHHHhcCCHHH
Q 003249 462 DKRWEDLDKATALDPTL----SYPYMYRASSLMTKQNVEAALAEINRILGFK------LA-LECLELRFCFFLALEDYQA 530 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~----~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~------P~-~~~~~~rg~~~~~lg~~~~ 530 (836)
++|+..|+++++++|++ +..|..+|.++...|++++|+..|++++++. |. ..++..+|.++..+|++++
T Consensus 22 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 101 (338)
T 3ro2_A 22 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 101 (338)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHH
Confidence 55556678888888888 4788999999999999999999999999883 22 3567789999999999999
Q ss_pred HHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhh--------------------HhHHHHHHhhhhccCcccccchH
Q 003249 531 ALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN--------------------WTIADCWLQLYDRWSSVDDIGSL 590 (836)
Q Consensus 531 Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~aL 590 (836)
|+..|++++++.|..............++.++...++ ++.| +
T Consensus 102 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A------------------~ 163 (338)
T 3ro2_A 102 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA------------------V 163 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH------------------H
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH------------------H
Confidence 9999999999987653322222222233344444444 4444 3
Q ss_pred HHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHhcCCHHHHH
Q 003249 591 SVIYQMLES------DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLVYEGWILYDTSHCEEGL 658 (836)
Q Consensus 591 ~~~~~al~~------~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e------al~~~G~il~~~G~~eeAl 658 (836)
..+.+++.. .|..+.++.++|.++..+|++++|+..+++++++.|.... ++.++|.++..+|++++|+
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334444433 4555678889999999999999999999999987655433 8889999999999999999
Q ss_pred HHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 659 RKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA 738 (836)
Q Consensus 659 ~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kA 738 (836)
..|++++++.|... +......++.++|.+|..+|++++|+..|++|
T Consensus 244 ~~~~~al~~~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 244 EYYKKTLLLARQLK----------------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc----------------------------------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999987654331 01112467889999999999999999999999
Q ss_pred HcCCc--------hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 003249 739 LKIRH--------TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 777 (836)
Q Consensus 739 L~l~~--------~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~ 777 (836)
+++.+ ..++..+|.++...|++++|+..+++++++.+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 88732 2477889999999999999999999998887654
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=1.9e-22 Score=206.88 Aligned_cols=213 Identities=13% Similarity=0.066 Sum_probs=170.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~ 556 (836)
.+..|+.+|.++...|++++|+..|+++++.+|+ ...+..+|.++..+|++++|+..|+++++++|++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 90 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA----------- 90 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-----------
Confidence 3567889999999999999999999999999996 6778889999999999999999999999887765
Q ss_pred HHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003249 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (836)
Q Consensus 557 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~ 636 (836)
+.+++.+|.++..+|++++|+..++++++++|+
T Consensus 91 -----------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 123 (243)
T 2q7f_A 91 -----------------------------------------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123 (243)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred -----------------------------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 345667778888999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHH
Q 003249 637 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALN 716 (836)
Q Consensus 637 ~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~ 716 (836)
++.++..+|.++..+|++++|+..|++++++.|+. +.++.
T Consensus 124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------~~~~~ 163 (243)
T 2q7f_A 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND----------------------------------------TEARF 163 (243)
T ss_dssp SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC----------------------------------------HHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----------------------------------------HHHHH
Confidence 99999999999999999999999999999876654 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHcc
Q 003249 717 NLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYC 788 (836)
Q Consensus 717 nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~~ 788 (836)
++|.+|...|++++|+..|++++++.| ..++..+|.++...|++++|+..|+++++++|++..++..++.++
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 999999999999999999999998865 467899999999999999999999999999999999998886653
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=4.5e-23 Score=248.74 Aligned_cols=173 Identities=15% Similarity=0.080 Sum_probs=161.2
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 003249 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (836)
Q Consensus 474 ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~ 552 (836)
-.|+++.+|+++|.++.++|++++|++.|++||+++|+ ..+++++|.+|.++|++++|+..|++||+++|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------- 76 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------- 76 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 46999999999999999999999999999999999997 6889999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003249 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ 632 (836)
Q Consensus 553 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~ 632 (836)
+.+|+++|.++.++|++++|++.|++|++
T Consensus 77 ---------------------------------------------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 77 ---------------------------------------------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35678889999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchH
Q 003249 633 HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712 (836)
Q Consensus 633 l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~ 712 (836)
++|+++++|+++|.++.++|++++|++.|++||+++|++ +
T Consensus 106 l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~----------------------------------------~ 145 (723)
T 4gyw_A 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF----------------------------------------P 145 (723)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----------------------------------------H
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------------h
Confidence 999999999999999999999999999999999998877 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
.++.|+|.+|..+|++++|++.|++++++.+.
T Consensus 146 ~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 146 DAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 68999999999999999999999999998543
No 51
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=2.6e-22 Score=216.38 Aligned_cols=264 Identities=11% Similarity=0.075 Sum_probs=154.7
Q ss_pred hhHHHHHHHHHhcCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLS-YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~-~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
++|+..++++...+|++. ++...++.+|..+|++++|+..+++. +|. ..++..++..+...|++++|++.+++++
T Consensus 16 ~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll 92 (291)
T 3mkr_A 16 QQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIVAELDREM 92 (291)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 555555666666666663 46666677777777777777766552 332 3445556667777777777777777776
Q ss_pred hh--CCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003249 540 TL--SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (836)
Q Consensus 540 ~l--~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l 617 (836)
.. +|+++.++..+ +.++...++++.| +..+.+ |++..++..+|.++.++
T Consensus 93 ~~~~~P~~~~~~~~l------a~~~~~~g~~~~A------------------l~~l~~-----~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 93 SRSVDVTNTTFLLMA------ASIYFYDQNPDAA------------------LRTLHQ-----GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HSCCCCSCHHHHHHH------HHHHHHTTCHHHH------------------HHHHTT-----CCSHHHHHHHHHHHHHT
T ss_pred hcccCCCCHHHHHHH------HHHHHHCCCHHHH------------------HHHHhC-----CCCHHHHHHHHHHHHHC
Confidence 54 46554332221 1222233333333 111211 44455555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHH
Q 003249 618 NCPEAAMRSLQLARQHAASDHERLVYEGWIL--YDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 695 (836)
Q Consensus 618 ~~~~eAl~~~~~Al~l~P~~~eal~~~G~il--~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i 695 (836)
|++++|+..|+++++.+|++.......||+. ...|++++|+..|+++++..|++
T Consensus 144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~------------------------ 199 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT------------------------ 199 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC------------------------
T ss_pred CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc------------------------
Confidence 5555555555555555555543333333222 23355555555555555544432
Q ss_pred HHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHH-HHHHHHHHH
Q 003249 696 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTA-YEEMTKLIK 772 (836)
Q Consensus 696 ~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A-~~~~~kaie 772 (836)
+.+|+++|.+|..+|++++|++.|++||+++|. .++.++|.++...|+.+++ ...++++++
T Consensus 200 ----------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 200 ----------------LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 467788888888888888888888888877654 5677888888888877654 456677888
Q ss_pred hcCCCHHHHHHHHHccCHHHHHHHH
Q 003249 773 KARNNASAYEKRSEYCDRELTRADL 797 (836)
Q Consensus 773 ~~p~~a~Ay~~r~~~~~~~~A~~D~ 797 (836)
++|+++.+..--..-..++.|+.-|
T Consensus 264 ~~P~~~~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 264 AHRSHPFIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHHHc
Confidence 8888877754433333345554444
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=9.9e-23 Score=234.73 Aligned_cols=210 Identities=14% Similarity=0.084 Sum_probs=190.9
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV-EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~-~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
++++..++++...+|+++.+|+.+|.++...|++ ++|+..|+++++++|+ ..+++++|.+|..+|++++|+..|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7788889999999999999999999999999999 9999999999999997 6889999999999999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc--
Q 003249 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL-- 617 (836)
Q Consensus 540 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l-- 617 (836)
+++|+. . +++++|.++..+
T Consensus 165 ~~~p~~-~----------------------------------------------------------~~~~lg~~~~~~~~ 185 (474)
T 4abn_A 165 THCKNK-V----------------------------------------------------------SLQNLSMVLRQLQT 185 (474)
T ss_dssp TTCCCH-H----------------------------------------------------------HHHHHHHHHTTCCC
T ss_pred hhCCCH-H----------------------------------------------------------HHHHHHHHHHHhcc
Confidence 999872 2 344555566666
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhccc---chHHHHHHHH
Q 003249 618 -------NCPEAAMRSLQLARQHAASDHERLVYEGWILYDT--------SHCEEGLRKAEESIQMKR---SFEAFFLKAY 679 (836)
Q Consensus 618 -------~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~--------G~~eeAl~~~~~Ai~l~p---~~~a~~~~a~ 679 (836)
|++++|+..|++|++++|+++.+|+++|.++..+ |++++|++.|++|++++| ++
T Consensus 186 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------- 257 (474)
T 4abn_A 186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN-------- 257 (474)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC--------
T ss_pred CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC--------
Confidence 9999999999999999999999999999999999 999999999999999887 33
Q ss_pred HhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhc
Q 003249 680 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLK 757 (836)
Q Consensus 680 aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~ 757 (836)
+.+|+++|.+|..+|++++|+++|++|++++|. .++.+++.++...
T Consensus 258 --------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 258 --------------------------------PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998765 6799999999999
Q ss_pred CCHHHHHHHHHHH
Q 003249 758 NNKTTAYEEMTKL 770 (836)
Q Consensus 758 g~~~~A~~~~~ka 770 (836)
|++++|++.+.+.
T Consensus 306 g~~~eAi~~~~~~ 318 (474)
T 4abn_A 306 SRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHhccc
Confidence 9999998766543
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=1e-21 Score=194.31 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=142.4
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|+..|++|++++|+++.+|.++|.++..+|++++|+..+.+++..+|+ ..++..+|.++...++++.|+..++++++
T Consensus 22 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~ 101 (184)
T 3vtx_A 22 DGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIA 101 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666699999999999999999999999999999999999999999997 57788899999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~ 620 (836)
++|++ ..+++.+|.++.++|++
T Consensus 102 ~~~~~----------------------------------------------------------~~~~~~lg~~~~~~g~~ 123 (184)
T 3vtx_A 102 LNTVY----------------------------------------------------------ADAYYKLGLVYDSMGEH 123 (184)
T ss_dssp HCTTC----------------------------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred hCccc----------------------------------------------------------hHHHHHHHHHHHHhCCc
Confidence 88876 34567788899999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH
Q 003249 621 EAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~ 672 (836)
++|++.|+++++++|+++++|+++|.++..+|++++|++.|++||+++|++.
T Consensus 124 ~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 124 DKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred hhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 9999999999999999999999999999999999999999999999999873
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=6.1e-22 Score=214.21 Aligned_cols=246 Identities=9% Similarity=0.004 Sum_probs=167.0
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHh-cCCC-hHHHHHHHHHHHhc
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMT-------KQNV-------EAALAEINRILG-FKLA-LECLELRFCFFLAL 525 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~-------~g~~-------~eAi~~~~kai~-l~P~-~~~~~~rg~~~~~l 525 (836)
++|+..|++|++++|+++.+|+++|..+.. .|++ ++|+..|++||+ ++|+ ...|..+|.++..+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 578889999999999999999999999874 5886 999999999999 7997 56788899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHH
Q 003249 526 EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGV 605 (836)
Q Consensus 526 g~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~ 605 (836)
|++++|+..|+++++++|++.. .
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~---------------------------------------------------------~ 135 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPT---------------------------------------------------------L 135 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTH---------------------------------------------------------H
T ss_pred CCHHHHHHHHHHHHhccccCcc---------------------------------------------------------H
Confidence 9999999999999999887642 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcccchHHHHHHHHHhhcc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYD-TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 684 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~-~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~ 684 (836)
+|.+.|.++.+.|++++|+..|++|++.+|..+.+|...+.+.+. +|++++|+..|++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~------------- 202 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------------- 202 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------
Confidence 344445555556666666666666666666666665554444332 566666666666666655543
Q ss_pred ccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC---Cc---hhHHhhHHHHHHhcC
Q 003249 685 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI---RH---TRAHQGLARVHFLKN 758 (836)
Q Consensus 685 ~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l---~~---~~A~~~la~~~~~~g 758 (836)
+.+|.++|..+..+|++++|+..|++|++. .| ...+..++......|
T Consensus 203 ---------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 203 ---------------------------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred ---------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 245666666666666666666666666663 22 134555566666666
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHccCHHHHHHHHHHhHhcCCCCcccch
Q 003249 759 NKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYR 812 (836)
Q Consensus 759 ~~~~A~~~~~kaie~~p~~a~Ay~~r~~~~~~~~A~~D~~~Ai~l~P~~~~~y~ 812 (836)
+.++|...+.++++..|+++.-.. .+...|--+.+.++|..+.+.+
T Consensus 256 ~~~~a~~~~~~a~~~~p~~~~~~~--------~~~~~~r~~~l~~~P~~~~~ln 301 (308)
T 2ond_A 256 DLASILKVEKRRFTAFREEYEGKE--------TALLVDRYKFMDLYPCSASELK 301 (308)
T ss_dssp CHHHHHHHHHHHHHHTTTTTSSCH--------HHHHHTTTCBTTBCSSCHHHHH
T ss_pred CHHHHHHHHHHHHHHcccccccch--------HHHHHHHHHhcccCCCCHHHHH
Confidence 666666666666666665432210 1222333355666666665544
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=1.8e-21 Score=201.56 Aligned_cols=216 Identities=13% Similarity=0.021 Sum_probs=191.0
Q ss_pred HHhcCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 003249 471 ATALDPTL-SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (836)
Q Consensus 471 Ai~ldP~~-~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~ 548 (836)
..+.+|++ +.+|+.+|.++...|++++|+..|+++++++|+ ..++..+|.++...|++++|+..|+++++++|++
T Consensus 28 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--- 104 (252)
T 2ho1_A 28 KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN--- 104 (252)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred ccccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---
Confidence 34567876 889999999999999999999999999999996 6788889999999999999999999999988765
Q ss_pred hhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003249 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (836)
Q Consensus 549 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~ 628 (836)
..+++.+|.++...|++++|++.|+
T Consensus 105 -------------------------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~ 129 (252)
T 2ho1_A 105 -------------------------------------------------------ARVLNNYGGFLYEQKRYEEAYQRLL 129 (252)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456677888899999999999999
Q ss_pred HHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCc
Q 003249 629 LARQ--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (836)
Q Consensus 629 ~Al~--l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~ 706 (836)
++++ ..|.++.+++.+|.++..+|++++|+..|++++++.|..
T Consensus 130 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----------------------------------- 174 (252)
T 2ho1_A 130 EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ----------------------------------- 174 (252)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----------------------------------
T ss_pred HHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc-----------------------------------
Confidence 9999 899999999999999999999999999999999877654
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003249 707 DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 784 (836)
Q Consensus 707 ~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r 784 (836)
..++.++|.+|..+|++++|+..|++++++.| ..++..++.++...|++++|...+++++++.|+++.++.-+
T Consensus 175 -----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 175 -----PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 35788999999999999999999999999865 46788999999999999999999999999999998876543
No 56
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.89 E-value=3.8e-22 Score=212.61 Aligned_cols=275 Identities=15% Similarity=0.068 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccch------hhHhhHHHHHHhcCCHHHHHHHHHHhHhcc------CCchH
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI------YSIAGLARLGYIKGHKLWAYEKLNSVISSV------TPLGW 450 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~------~a~~~la~~~~~~G~~~~A~~~~~~ai~~~------~~~~~ 450 (836)
...++..|..+...|++++|+..|+++++..|. .++..+|.++...|++++|+..+.+++... +..+.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 457788999999999999999999999998544 467789999999999999999988887652 22233
Q ss_pred HHHHhhh----cCChhhHHHHHHHHHhcCCCCh------HHHHHHHHHHHhcCC--------------------HHHHHH
Q 003249 451 MYQERSL----YCEGDKRWEDLDKATALDPTLS------YPYMYRASSLMTKQN--------------------VEAALA 500 (836)
Q Consensus 451 ay~~r~~----~~~~~eAi~d~~kAi~ldP~~~------~ay~~rg~~l~~~g~--------------------~~eAi~ 500 (836)
++...|. .+..++|+..+++++++.|... .++.++|.++...|+ +++|+.
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 3333332 1334666666666666655442 266666666666666 666666
Q ss_pred HHHHHHhcCC------C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHH
Q 003249 501 EINRILGFKL------A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADC 573 (836)
Q Consensus 501 ~~~kai~l~P------~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ 573 (836)
.|++++++.+ . ..++.++|.++..+|++++|+..|++++++.|....
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------------- 218 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------------- 218 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------------------------
Confidence 6666665522 1 134555666666666666666666666665443210
Q ss_pred HHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHH
Q 003249 574 WLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWI 647 (836)
Q Consensus 574 ~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~------~eal~~~G~i 647 (836)
.+..+.++.++|.++...|++++|+..+++++++.|+. +.++..+|.+
T Consensus 219 --------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 219 --------------------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 01124578899999999999999999999999998877 8899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCC
Q 003249 648 LYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQ 727 (836)
Q Consensus 648 l~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~ 727 (836)
+..+|++++|+..|++++++.|... +......++.++|.+|..+|+
T Consensus 273 ~~~~g~~~~A~~~~~~a~~~~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 273 YTLLQDYEKAIDYHLKHLAIAQELK----------------------------------DRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHT----------------------------------CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcC----------------------------------CcHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999998755431 011124689999999999999
Q ss_pred HHHHHHHHHHHHcCCc
Q 003249 728 LDLAADCYSNALKIRH 743 (836)
Q Consensus 728 ~deAi~~y~kAL~l~~ 743 (836)
+++|+..|++|+++.+
T Consensus 319 ~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 319 HDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999999843
No 57
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1.9e-20 Score=217.79 Aligned_cols=394 Identities=9% Similarity=-0.068 Sum_probs=275.8
Q ss_pred hHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch-hhHhhHHH-HHHhcCCHHHHHH----H
Q 003249 364 KTVCFLERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI-YSIAGLAR-LGYIKGHKLWAYE----K 437 (836)
Q Consensus 364 ~~v~LLe~a~~ca~~~~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~-~a~~~la~-~~~~~G~~~~A~~----~ 437 (836)
....++++++...+. .+..+...|......|++++|+..|++|++..|. ..|...+. +....|+..+|.+ .
T Consensus 30 ~a~~~~e~al~~~P~---~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~ 106 (530)
T 2ooe_A 30 KARKTYERLVAQFPS---SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA 106 (530)
T ss_dssp HHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 334477777764332 3467888999999999999999999999998653 45666664 3445677666654 6
Q ss_pred HHHhHhc---cCCchHHHHHhhh-------------cCChhhHHHHHHHHHhcCCCChH--HHHHHHH------------
Q 003249 438 LNSVISS---VTPLGWMYQERSL-------------YCEGDKRWEDLDKATALDPTLSY--PYMYRAS------------ 487 (836)
Q Consensus 438 ~~~ai~~---~~~~~~ay~~r~~-------------~~~~~eAi~d~~kAi~ldP~~~~--ay~~rg~------------ 487 (836)
|++++.. +++....|..... .+..++|...|++|++ .|.+.. .|...+.
T Consensus 107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~ 185 (530)
T 2ooe_A 107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKK 185 (530)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHH
Confidence 7777653 4455555543322 1334789999999999 687642 2322111
Q ss_pred -HHHhcCCHHHHHHHHHH------HHhc-----CCCh-----H-HHHHHHHHHHhc------CCH----HHHHHHHHHHH
Q 003249 488 -SLMTKQNVEAALAEINR------ILGF-----KLAL-----E-CLELRFCFFLAL------EDY----QAALCDVQAIL 539 (836)
Q Consensus 488 -~l~~~g~~~eAi~~~~k------ai~l-----~P~~-----~-~~~~rg~~~~~l------g~~----~~Ai~d~~~al 539 (836)
+-...+++.+|...|.+ +++. .|+. . .-..+..+.... ++. +.|+..|++++
T Consensus 186 ~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 186 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 11235678888877776 5542 4431 1 111123333322 333 58899999999
Q ss_pred hhCCCchhhhhhHHHHHHHHH-HHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHh-cCCCCHHHHHHHHHHHHHc
Q 003249 540 TLSPDYRMFEGRVAASQLHML-VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE-SDAPKGVLYFRQSLLLLRL 617 (836)
Q Consensus 540 ~l~P~~~~~~~~~~~~~~~~~-l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~-~~P~~~~~~~~~gl~l~~l 617 (836)
..+|+++..+...+....... .....+.++.|..+ ...++.++.++++ .+|++..+|+..|.++.+.
T Consensus 266 ~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~-----------~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 266 LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF-----------SDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH-----------HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh-----------hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 999999876655442111000 00001111111000 0135889999997 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHH
Q 003249 618 NCPEAAMRSLQLARQHAASDH-ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVV 695 (836)
Q Consensus 618 ~~~~eAl~~~~~Al~l~P~~~-eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i 695 (836)
|++++|...|+++++++|+++ .+|...|.++..+|++++|++.|++|++..|.. ..+...+..... ..+....+.
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~---~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY---CSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH---HTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH---HcCChhHHH
Confidence 999999999999999999996 699999999999999999999999999998875 333333322100 134567788
Q ss_pred HHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch------hHHhhHHHHHHhcCCHHHHHHHHHH
Q 003249 696 SLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHFLKNNKTTAYEEMTK 769 (836)
Q Consensus 696 ~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~------~A~~~la~~~~~~g~~~~A~~~~~k 769 (836)
..+++|++..++. +.+|.++|..+...|++++|...|++|++..|. ..+..........|+.+.+...+.+
T Consensus 412 ~~~e~al~~~p~~---~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 412 KIFELGLKKYGDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC---HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999876654 689999999999999999999999999987432 2555667777788999999999999
Q ss_pred HHHhcCCCH
Q 003249 770 LIKKARNNA 778 (836)
Q Consensus 770 aie~~p~~a 778 (836)
+++..|+++
T Consensus 489 ~~~~~p~~~ 497 (530)
T 2ooe_A 489 RFTAFREEY 497 (530)
T ss_dssp HHHHTHHHH
T ss_pred HHHHCchhc
Confidence 999999554
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.89 E-value=9e-22 Score=226.72 Aligned_cols=209 Identities=11% Similarity=0.028 Sum_probs=177.8
Q ss_pred HHHHHHHHHhHhccCCchHHHHHhhh----cCCh-hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 432 LWAYEKLNSVISSVTPLGWMYQERSL----YCEG-DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (836)
Q Consensus 432 ~~A~~~~~~ai~~~~~~~~ay~~r~~----~~~~-~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai 506 (836)
++++..+.+.....|..+.++..+|. .++. ++|+..|++|++++|+++.+|+++|.++..+|++++|+..|++++
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 164 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555553 2455 777788999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhh
Q 003249 507 GFKLALECLELRFCFFLAL---------EDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQL 577 (836)
Q Consensus 507 ~l~P~~~~~~~rg~~~~~l---------g~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~ 577 (836)
+++|++.++.++|.++..+ |++++|+..|+++++++|++.
T Consensus 165 ~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~------------------------------- 213 (474)
T 4abn_A 165 THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG------------------------------- 213 (474)
T ss_dssp TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH-------------------------------
T ss_pred hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH-------------------------------
Confidence 9999988889999999999 999999999999999888764
Q ss_pred hhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCC---CCHHHHHHHHH
Q 003249 578 YDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL--------NCPEAAMRSLQLARQHAA---SDHERLVYEGW 646 (836)
Q Consensus 578 ~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l--------~~~~eAl~~~~~Al~l~P---~~~eal~~~G~ 646 (836)
.+|+++|.++..+ |++++|+..|++|++++| +++.+|+++|.
T Consensus 214 ---------------------------~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~ 266 (474)
T 4abn_A 214 ---------------------------RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRAT 266 (474)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 3455666666666 889999999999999999 99999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Q 003249 647 ILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG 726 (836)
Q Consensus 647 il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g 726 (836)
++..+|++++|++.|++|++++|++ ..++.++|.++..+|
T Consensus 267 ~~~~~g~~~~A~~~~~~al~l~p~~----------------------------------------~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 267 LHKYEESYGEALEGFSQAAALDPAW----------------------------------------PEPQQREQQLLEFLS 306 (474)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC----------------------------------------HHHHHHHHHHHHHHH
Confidence 9999999999999999999988876 367899999999999
Q ss_pred CHHHHHHHHHHH
Q 003249 727 QLDLAADCYSNA 738 (836)
Q Consensus 727 ~~deAi~~y~kA 738 (836)
++++|++.|.+.
T Consensus 307 ~~~eAi~~~~~~ 318 (474)
T 4abn_A 307 RLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHhccc
Confidence 999999987654
No 59
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.88 E-value=2.3e-21 Score=210.43 Aligned_cols=226 Identities=10% Similarity=0.033 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCC-hHHHHHHHHHH----Hhc---CCHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ--NVEAALAEINRILGFKLA-LECLELRFCFF----LAL---EDYQAA 531 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g--~~~eAi~~~~kai~l~P~-~~~~~~rg~~~----~~l---g~~~~A 531 (836)
++|+..++++|+++|++..+|++||.++..+| ++++|+..++++|.++|+ +.+|+.|++++ ..+ ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 68999999999999999999999999999999 999999999999999996 68899999988 666 667777
Q ss_pred HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHH
Q 003249 532 LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQS 611 (836)
Q Consensus 532 i~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~g 611 (836)
+..++++++++|++ ..+|+.|+
T Consensus 130 L~~~~~~l~~~pkn----------------------------------------------------------y~aW~~R~ 151 (306)
T 3dra_A 130 FDILEAMLSSDPKN----------------------------------------------------------HHVWSYRK 151 (306)
T ss_dssp HHHHHHHHHHCTTC----------------------------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHhCCCC----------------------------------------------------------HHHHHHHH
Confidence 76666666666555 45667777
Q ss_pred HHHHHcCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcccchHHHHHHHHHhhc
Q 003249 612 LLLLRLNCPE--AAMRSLQLARQHAASDHERLVYEGWILYDTSH------CEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (836)
Q Consensus 612 l~l~~l~~~~--eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~------~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~ 683 (836)
.++.++++++ ++++.++++++.+|.+..||.+||+++..+|+ ++++++.++++|.++|++
T Consensus 152 ~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n------------ 219 (306)
T 3dra_A 152 WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN------------ 219 (306)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC------------
T ss_pred HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC------------
Confidence 7777777777 88888888888888888888888888888777 788888888888777766
Q ss_pred cccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHH-HHHHHHHHcCC-----chhHHhhHHHHHHhc
Q 003249 684 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLA-ADCYSNALKIR-----HTRAHQGLARVHFLK 757 (836)
Q Consensus 684 ~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deA-i~~y~kAL~l~-----~~~A~~~la~~~~~~ 757 (836)
..+|++++.++...|+..++ .+.+.++++++ ...|...+|.++.+.
T Consensus 220 ----------------------------~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 220 ----------------------------PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp ----------------------------HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ----------------------------ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 24666667777666664443 34555555543 345667777777777
Q ss_pred CCHHHHHHHHHHHHH-hcCCCHHHHHHHH
Q 003249 758 NNKTTAYEEMTKLIK-KARNNASAYEKRS 785 (836)
Q Consensus 758 g~~~~A~~~~~kaie-~~p~~a~Ay~~r~ 785 (836)
|+.++|++.|+++++ ++|-++..|.-|+
T Consensus 272 ~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 272 KKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 777777777777775 5777777766654
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.88 E-value=5e-21 Score=193.13 Aligned_cols=213 Identities=15% Similarity=0.039 Sum_probs=179.0
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhH
Q 003249 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRV 552 (836)
Q Consensus 474 ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~ 552 (836)
.+|+++.+|..+|.++...|++++|+..|+++++++|+ ..++..+|.++..+|++++|+..|+++++++|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 76 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA------ 76 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh------
Confidence 46888889999999999999999999999999999996 57788889999999999999999999888877652
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 003249 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL-NCPEAAMRSLQLAR 631 (836)
Q Consensus 553 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l-~~~~eAl~~~~~Al 631 (836)
.+++.+|.++... |++++|+..+++++
T Consensus 77 ----------------------------------------------------~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 77 ----------------------------------------------------EINNNYGWFLCGRLNRPAESMAYFDKAL 104 (225)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456677788888 99999999999999
Q ss_pred H--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCcccc
Q 003249 632 Q--HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRL 709 (836)
Q Consensus 632 ~--l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~ 709 (836)
+ ..|.++.+++.+|.++..+|++++|+..|++++++.|++
T Consensus 105 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------------------------- 146 (225)
T 2vq2_A 105 ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF-------------------------------------- 146 (225)
T ss_dssp TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------------------------------
T ss_pred cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------------------------------
Confidence 8 677778899999999999999999999999998876654
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc---hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 003249 710 RKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH---TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKR 784 (836)
Q Consensus 710 ~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~---~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r 784 (836)
+.++.++|.+|...|++++|+..|++++++.| ..++..++.++...|+.++|...++++++.+|+++.+..-+
T Consensus 147 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 147 --PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 35788889999999999999999999988755 35677777888888999988888888888899988876543
No 61
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.88 E-value=9.5e-23 Score=202.45 Aligned_cols=141 Identities=22% Similarity=0.304 Sum_probs=130.0
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.+++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+...+|+|+ ++++++|+.+|+|+|||++. ++.+++
T Consensus 29 ~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~~l~~~Yt~~~~-~~~~~~ 105 (172)
T 3htm_A 29 WENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKMA 105 (172)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEEC--SSCHHHHHHHHHHHHHSCCT-TGGGTH
T ss_pred HhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEec--CCCHHHHHHHHHHHhCCCCC-CcHHHH
Confidence 457889999999999999999999999999999999999999999999999 59999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhcccCCC
Q 003249 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN 320 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~~l~ 320 (836)
.+|+.+|++|.++.|+..|+..+...+ +.++++.++..|..++...|...|.+++.+++...+.
T Consensus 106 ~~ll~~A~~~~~~~l~~~c~~~l~~~l-~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~v~~ 169 (172)
T 3htm_A 106 DDLLAAADKYALERLKVMCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATDVLE 169 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998776 5679999999999999999999999999999876554
No 62
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=1.2e-21 Score=200.92 Aligned_cols=213 Identities=15% Similarity=0.081 Sum_probs=173.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHH
Q 003249 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (836)
Q Consensus 512 ~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~ 591 (836)
...++.+|..+...|++++|+..|+++++.+|++
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~---------------------------------------------- 56 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED---------------------------------------------- 56 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTC----------------------------------------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc----------------------------------------------
Confidence 3567778999999999999999999998887765
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+.+++.+|.++...|++++|+..++++++++|+++.++..+|.++..+|++++|++.|++++++.|..
T Consensus 57 ------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 124 (243)
T 2q7f_A 57 ------------AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN 124 (243)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 34567788889999999999999999999999999999999999999999999999999999877654
Q ss_pred HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhh
Q 003249 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQG 749 (836)
Q Consensus 672 ~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~ 749 (836)
+.++.++|.+|...|++++|+..|++++++.| ..++..
T Consensus 125 ----------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 164 (243)
T 2q7f_A 125 ----------------------------------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQ 164 (243)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35789999999999999999999999999865 478899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHHh
Q 003249 750 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVFL 822 (836)
Q Consensus 750 la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~~ 822 (836)
+|.++...|++++|+..|+++++.+|+++.+|..++ ..|++++|+..|+++++++|++..++..++.+....+
T Consensus 165 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999985 4599999999999999999999999998887765443
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=1.1e-20 Score=193.84 Aligned_cols=212 Identities=13% Similarity=0.073 Sum_probs=183.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccch
Q 003249 511 ALECLELRFCFFLALEDYQAALCDVQAILTLSP-DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (836)
Q Consensus 511 ~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P-~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~a 589 (836)
+++.++++|.++..+|++++|+..|+++++++| .+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------------------------------- 41 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD-------------------------------------------- 41 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC--------------------------------------------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC--------------------------------------------
Confidence 468899999999999999999999999999987 43
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 003249 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (836)
Q Consensus 590 L~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p 669 (836)
..+++++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|
T Consensus 42 --------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 42 --------------SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred --------------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 345677899999999999999999999999999999999999999999999999999999999998
Q ss_pred chHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch----h
Q 003249 670 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----R 745 (836)
Q Consensus 670 ~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~----~ 745 (836)
++..+... .+.+|.++|.++...|++++|++.|++|++++|. .
T Consensus 108 ~~~~~~~~---------------------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 154 (228)
T 4i17_A 108 GNATIEKL---------------------------------YAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD 154 (228)
T ss_dssp TCHHHHHH---------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH
T ss_pred CcHHHHHH---------------------------------HHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH
Confidence 87422111 1358999999999999999999999999999887 6
Q ss_pred HHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH--HccCHHHHHHHHHHhHhcCCCCcccchhhHHHH
Q 003249 746 AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS--EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGL 818 (836)
Q Consensus 746 A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~--~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~ 818 (836)
++.++|.++..+|+ ..+.++..+.+.+...|.... ..+++++|+..|++|++++|+...+....+.+.
T Consensus 155 ~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 155 ALYSLGVLFYNNGA-----DVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 89999999987764 346778888888877776653 347789999999999999999987776665553
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=3.6e-22 Score=240.84 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=159.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHH
Q 003249 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a 678 (836)
..|+++.+|+++|.++.++|++++|++.|++|++++|+++++|+++|.+|.++|++++|++.|++||+++|++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~------- 76 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------- 76 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 4699999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHh
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 756 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~ 756 (836)
+++|+|+|.+|.++|++++|+++|++||+++|. .++.++|.++..
T Consensus 77 ---------------------------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 77 ---------------------------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123 (723)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999999765 789999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCC
Q 003249 757 KNNKTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLR 807 (836)
Q Consensus 757 ~g~~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~ 807 (836)
+|++++|++.|+++|+++|+++.+|.+++ ..|++++|++.|++++++.|+.
T Consensus 124 ~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 99999999999999999999999999995 4599999999999999988754
No 65
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.87 E-value=1.1e-20 Score=216.43 Aligned_cols=347 Identities=11% Similarity=0.022 Sum_probs=247.9
Q ss_pred hhHHHHHHhcCCHHHHHHHHHHhHhccC-----CchHHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Q 003249 419 AGLARLGYIKGHKLWAYEKLNSVISSVT-----PLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQ 493 (836)
Q Consensus 419 ~~la~~~~~~G~~~~A~~~~~~ai~~~~-----~~~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g 493 (836)
..+|..+...|++++|+..|.++...+. .+|.+|...|...+.++|+..|.+|++. ++.+++++|.++...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCC
Confidence 3468888999999999999999987643 4677776666555558999999999977 7789999999887777
Q ss_pred -----CHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHH---HHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHh
Q 003249 494 -----NVEAALAEINRILGFKLALECLELRFCFFLALEDYQAA---LCDVQAILTLSPDYRMFEGRVAASQLHMLVREHI 565 (836)
Q Consensus 494 -----~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~A---i~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~ 565 (836)
++++|+..|.+|++.++ +.+++++|.+|...+..+++ +..+.++.... ++.++..++ .++...
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~Lg------~~y~~~ 154 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE-GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQV------LLYRTQ 154 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC-SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTTHHHHHH------HHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHH------HHHHcC
Confidence 88999999999998654 34788899999887765544 44455544433 333333332 333333
Q ss_pred hhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHH
Q 003249 566 DNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHAASDHERLV 642 (836)
Q Consensus 566 ~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~---~~~eAl~~~~~Al~l~P~~~eal~ 642 (836)
+.++++..+ +...+..+...+|. +++++|.++...| ++++|+..|+++.+..|.++.+++
T Consensus 155 ~~~~~~~~~--------------a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~ 217 (452)
T 3e4b_A 155 GTYDQHLDD--------------VERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVD 217 (452)
T ss_dssp TCGGGGHHH--------------HHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCcccCHHH--------------HHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 333322111 12234445555555 9999999999999 999999999999999999999999
Q ss_pred HHHHHHHhc----CCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHH
Q 003249 643 YEGWILYDT----SHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN 717 (836)
Q Consensus 643 ~~G~il~~~----G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~n 717 (836)
++|.+|... +++++|+..|+++. |++ .+.++.+..+-. +....+...++..+++|++.. .+.++++
T Consensus 218 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~-~~~~~d~~~A~~~~~~Aa~~g-----~~~A~~~ 288 (452)
T 3e4b_A 218 SVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYD-FPELGDVEQMMKYLDNGRAAD-----QPRAELL 288 (452)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHH-SGGGCCHHHHHHHHHHHHHTT-----CHHHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHCC-----CHHHHHH
Confidence 999999876 79999999999998 554 788888877321 122667888999999998643 3689999
Q ss_pred HHHHHHhcC-----CHHHHHHHHHHHHcCCchhHHhhHHHHHHh----cCCHHHHHHHHHHHHHhcCCCHHHHHHHHHc-
Q 003249 718 LGSVYVDCG-----QLDLAADCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTKLIKKARNNASAYEKRSEY- 787 (836)
Q Consensus 718 lG~~y~~~g-----~~deAi~~y~kAL~l~~~~A~~~la~~~~~----~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~- 787 (836)
+|.+|. .| ++++|+..|++|. .++..|++++|.+|.. ..++++|+.-|.++.+ ++++.|+++.+..
T Consensus 289 Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y 364 (452)
T 3e4b_A 289 LGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLF 364 (452)
T ss_dssp HHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHH
T ss_pred HHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHH
Confidence 999998 66 9999999999999 7788999999999887 4499999999999987 5678888888754
Q ss_pred --c-----CHHHHHHHHHHhHhcCCCC
Q 003249 788 --C-----DRELTRADLEMVTQLDPLR 807 (836)
Q Consensus 788 --~-----~~~~A~~D~~~Ai~l~P~~ 807 (836)
| |.++|+.+|++|.+..+..
T Consensus 365 ~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 365 SQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp HSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred HhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 3 7999999999999987754
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=2.2e-20 Score=201.92 Aligned_cols=254 Identities=11% Similarity=-0.028 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHhccc--hhhHhhHHHHHHhc-------CCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHHHHHH
Q 003249 400 DEAEHLFEAAVNAGH--IYSIAGLARLGYIK-------GHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDK 470 (836)
Q Consensus 400 ~eAi~~f~~Al~l~~--~~a~~~la~~~~~~-------G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d~~k 470 (836)
++|+..|++|++.+| ..+|..+|.++... |+...+ .+. .++|+..|++
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~--------------------~~~---~~~A~~~~~r 89 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA--------------------KLF---SDEAANIYER 89 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHH--------------------HHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhc--------------------ccc---hHHHHHHHHH
Confidence 678888888887654 34677777665433 221110 111 2789999999
Q ss_pred HHh-cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 471 ATA-LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LE-CLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 471 Ai~-ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~-~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
|++ ++|++..+|.++|.++...|++++|+..|+++|+++|+ +. +|.+.|.++..+|++++|+..|++|++++|....
T Consensus 90 Al~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 169 (308)
T 2ond_A 90 AISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 169 (308)
T ss_dssp HHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence 999 79999999999999999999999999999999999996 55 7889999999999999999999999999997643
Q ss_pred hhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHH
Q 003249 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL-RLNCPEAAMRS 626 (836)
Q Consensus 548 ~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~-~l~~~~eAl~~ 626 (836)
.+ ...+.+.. .+|++++|+..
T Consensus 170 ~~----------------------------------------------------------~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 170 VY----------------------------------------------------------VTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp HH----------------------------------------------------------HHHHHHHHHTSCCHHHHHHH
T ss_pred HH----------------------------------------------------------HHHHHHHHHHcCCHHHHHHH
Confidence 21 11222212 37999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---ccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhc
Q 003249 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM---KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALK 703 (836)
Q Consensus 627 ~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l---~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~ 703 (836)
|+++++++|+++++|..+|.++..+|++++|+..|+++++. .|+.
T Consensus 192 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~-------------------------------- 239 (308)
T 2ond_A 192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK-------------------------------- 239 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG--------------------------------
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH--------------------------------
Confidence 99999999999999999999999999999999999999985 3321
Q ss_pred CCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHH-hhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 003249 704 CPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAH-QGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE 782 (836)
Q Consensus 704 ~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~-~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~ 782 (836)
....|.+++..+...|++++|...+++|+++.|.... ..++.+ .+--+.+.++|+++.+.+
T Consensus 240 -------~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~~~~~-----------~~r~~~l~~~P~~~~~ln 301 (308)
T 2ond_A 240 -------SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALL-----------VDRYKFMDLYPCSASELK 301 (308)
T ss_dssp -------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCHHHHH-----------HTTTCBTTBCSSCHHHHH
T ss_pred -------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccchHHHH-----------HHHHHhcccCCCCHHHHH
Confidence 1357889999999999999999999999998775321 111222 222267789999999987
Q ss_pred HH
Q 003249 783 KR 784 (836)
Q Consensus 783 ~r 784 (836)
-.
T Consensus 302 ~l 303 (308)
T 2ond_A 302 AL 303 (308)
T ss_dssp TT
T ss_pred hc
Confidence 54
No 67
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.86 E-value=2.7e-21 Score=207.74 Aligned_cols=242 Identities=13% Similarity=-0.000 Sum_probs=182.9
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 463 KRWEDLDKATALDPTLSYPYMYRASSLMTK---QNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAIL 539 (836)
Q Consensus 463 eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~---g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al 539 (836)
+|.+.+.+|-+.-|.....+ .++.. +++++|+..|+++ |.+|..+|++++|+..|++|+
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHH
Confidence 45556677777766542222 11222 2588999988887 567888999999999999999
Q ss_pred hhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 003249 540 TLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC 619 (836)
Q Consensus 540 ~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~ 619 (836)
++.+.... . +..+.+|.++|.++..+|+
T Consensus 65 ~~~~~~~~--------------------~--------------------------------~~~a~~~~~lg~~~~~~g~ 92 (292)
T 1qqe_A 65 DYQKKAGN--------------------E--------------------------------DEAGNTYVEAYKCFKSGGN 92 (292)
T ss_dssp HHHHHTTC--------------------H--------------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCC--------------------H--------------------------------HHHHHHHHHHHHHHHHCCC
Confidence 88543210 0 1114577888999999999
Q ss_pred HHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChh
Q 003249 620 PEAAMRSLQLARQHAASD------HERLVYEGWILYDT-SHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSS 692 (836)
Q Consensus 620 ~~eAl~~~~~Al~l~P~~------~eal~~~G~il~~~-G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~ 692 (836)
+++|+..|++|+++.|.. +.++.++|.++..+ |++++|+..|++|+++.|...
T Consensus 93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~-------------------- 152 (292)
T 1qqe_A 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ-------------------- 152 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--------------------
Confidence 999999999999988764 67899999999996 999999999999999876431
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch---------hHHhhHHHHHHhcCCHHHH
Q 003249 693 TVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT---------RAHQGLARVHFLKNNKTTA 763 (836)
Q Consensus 693 ~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~---------~A~~~la~~~~~~g~~~~A 763 (836)
+......+++++|.+|..+|++++|+.+|++++++.|. .++.++|.++..+|++++|
T Consensus 153 --------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 153 --------------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 00011457999999999999999999999999998643 1578999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHH-----------HHccCHHHHHHHHHHhHhcCCCCc
Q 003249 764 YEEMTKLIKKARNNASAYEKR-----------SEYCDRELTRADLEMVTQLDPLRV 808 (836)
Q Consensus 764 ~~~~~kaie~~p~~a~Ay~~r-----------~~~~~~~~A~~D~~~Ai~l~P~~~ 808 (836)
+..|+++++++|++..+...+ +..+++++|+.+|++++++||..+
T Consensus 219 ~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 219 ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 999999999999988765332 234679999999999999999764
No 68
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.85 E-value=1.6e-19 Score=186.87 Aligned_cols=204 Identities=15% Similarity=0.005 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccch--hhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhc
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHI--YSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLY 458 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~--~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~ 458 (836)
..+.+++.+|.++...|++++|+.+|+++++.+|. .++..+|.++...|++++|+
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~----------------------- 91 (252)
T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLAD----------------------- 91 (252)
T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHH-----------------------
Confidence 34789999999999999999999999999987653 46777888887777765544
Q ss_pred CChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC-hHHHHHHHHHHHhcCCHHHHHHHH
Q 003249 459 CEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILG--FKLA-LECLELRFCFFLALEDYQAALCDV 535 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~--l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~ 535 (836)
..|+++++++|++..+|..+|.++...|++++|+..|+++++ .+|+ ...+..+|.++..+|++++|+..|
T Consensus 92 -------~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 92 -------EEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp -------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------HHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 447888888999999999999999999999999999999999 7776 467888999999999999999999
Q ss_pred HHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003249 536 QAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLL 615 (836)
Q Consensus 536 ~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~ 615 (836)
+++++++|++ +.+++.+|.++.
T Consensus 165 ~~~~~~~~~~----------------------------------------------------------~~~~~~la~~~~ 186 (252)
T 2ho1_A 165 EKSLRLNRNQ----------------------------------------------------------PSVALEMADLLY 186 (252)
T ss_dssp HHHHHHCSCC----------------------------------------------------------HHHHHHHHHHHH
T ss_pred HHHHhcCccc----------------------------------------------------------HHHHHHHHHHHH
Confidence 9999888765 345667788889
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH
Q 003249 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (836)
Q Consensus 616 ~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~ 672 (836)
.+|++++|+..++++++.+|+++.++..++.++..+|++++|+..+++++++.|+..
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999999999999999999999999999999998874
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=1.3e-19 Score=182.71 Aligned_cols=210 Identities=15% Similarity=0.099 Sum_probs=184.4
Q ss_pred CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCccccc
Q 003249 509 KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDI 587 (836)
Q Consensus 509 ~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~ 587 (836)
+|+ +..+..+|.++...|++++|+..|+++++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------------------------ 41 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN------------------------------------------ 41 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------------------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc------------------------------------------
Confidence 454 4678889999999999999999999999988876
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 003249 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEESIQ 666 (836)
Q Consensus 588 ~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~-G~~eeAl~~~~~Ai~ 666 (836)
+.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..+ |++++|+..|+++++
T Consensus 42 ----------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 42 ----------------ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred ----------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 335677788899999999999999999999999999999999999999 999999999999997
Q ss_pred cccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--h
Q 003249 667 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--T 744 (836)
Q Consensus 667 l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~ 744 (836)
.|.. +....++.++|.+|...|++++|+..|++++++.| .
T Consensus 106 -~~~~-------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 147 (225)
T 2vq2_A 106 -DPTY-------------------------------------PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP 147 (225)
T ss_dssp -STTC-------------------------------------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred -CcCC-------------------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 2221 11246899999999999999999999999999865 4
Q ss_pred hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcC-CCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcccchhh
Q 003249 745 RAHQGLARVHFLKNNKTTAYEEMTKLIKKAR-NNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPYRYR 814 (836)
Q Consensus 745 ~A~~~la~~~~~~g~~~~A~~~~~kaie~~p-~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r 814 (836)
.++.++|.++...|++++|+..++++++++| ++..++.... ..|+.+.|..-++++++++|+...+....
T Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 7899999999999999999999999999999 9999987764 45899999999999999999988765543
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.85 E-value=3.9e-20 Score=194.17 Aligned_cols=224 Identities=11% Similarity=0.053 Sum_probs=164.9
Q ss_pred HHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 003249 471 ATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (836)
Q Consensus 471 Ai~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~----~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~ 546 (836)
..+++|+++..++.+|..++..|++++|+..|+++++.+|+ +.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 7 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 7 SGRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp ----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc
Confidence 45789999999999999999999999999999999999995 46788999999999999999999999999999762
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH--------cC
Q 003249 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR--------LN 618 (836)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~--------l~ 618 (836)
..+.+++.+|.++.. +|
T Consensus 87 -------------------------------------------------------~~~~a~~~lg~~~~~~~~~~~~~~~ 111 (261)
T 3qky_A 87 -------------------------------------------------------RVPQAEYERAMCYYKLSPPYELDQT 111 (261)
T ss_dssp -------------------------------------------------------THHHHHHHHHHHHHHHCCCTTSCCH
T ss_pred -------------------------------------------------------hhHHHHHHHHHHHHHhcccccccch
Confidence 223456666666666 55
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHH
Q 003249 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLL 698 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l 698 (836)
++++|+..|+++++..|+++.+...++.+.. .
T Consensus 112 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~------------------------------------------------~ 143 (261)
T 3qky_A 112 DTRKAIEAFQLFIDRYPNHELVDDATQKIRE------------------------------------------------L 143 (261)
T ss_dssp HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH------------------------------------------------H
T ss_pred hHHHHHHHHHHHHHHCcCchhHHHHHHHHHH------------------------------------------------H
Confidence 5666666666666655555433311111100 0
Q ss_pred HHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-----hHHhhHHHHHHhc----------CCHHHH
Q 003249 699 EDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLK----------NNKTTA 763 (836)
Q Consensus 699 ~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-----~A~~~la~~~~~~----------g~~~~A 763 (836)
. ......+.++|.+|...|++++|+..|+++++..|. .++..+|.++... |++++|
T Consensus 144 ~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 144 R---------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp H---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred H---------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 0 001345778888888888888888888888876543 4778888888766 888999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHccCHHHHHHHHHHhHhcCCC
Q 003249 764 YEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPL 806 (836)
Q Consensus 764 ~~~~~kaie~~p~~a~Ay~~r~~~~~~~~A~~D~~~Ai~l~P~ 806 (836)
+..|.++++..|+++.+...+..+++....+..++.++.+.+.
T Consensus 215 ~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 257 (261)
T 3qky_A 215 VELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDASLAQG 257 (261)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTTCCCC
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhHHhhh
Confidence 9999999999999977666665555556777777777776653
No 71
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.85 E-value=6.3e-21 Score=229.51 Aligned_cols=154 Identities=11% Similarity=-0.028 Sum_probs=97.0
Q ss_pred CChhhHHHHHHHHH--------hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHH
Q 003249 459 CEGDKRWEDLDKAT--------ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQ 529 (836)
Q Consensus 459 ~~~~eAi~d~~kAi--------~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~ 529 (836)
++.++|++.|++|+ +++|+++.+|+.+|.++.++|++++|+..|+++++++|+ ..+++++|.++..+|+++
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 484 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYD 484 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHH
T ss_pred cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHH
Confidence 34455666666666 556666666666666666666666666666666666664 355555666666666666
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHH
Q 003249 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (836)
Q Consensus 530 ~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~ 609 (836)
+|+.+|++|++++|++ +.+|++
T Consensus 485 ~A~~~~~~al~l~P~~----------------------------------------------------------~~~~~~ 506 (681)
T 2pzi_A 485 SATKHFTEVLDTFPGE----------------------------------------------------------LAPKLA 506 (681)
T ss_dssp HHHHHHHHHHHHSTTC----------------------------------------------------------SHHHHH
T ss_pred HHHHHHHHHHHhCCCC----------------------------------------------------------hHHHHH
Confidence 6666666655555544 345566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 610 ~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+|.++.++|++++ ++.|++|++++|+++++|+++|.++..+|++++|++.|++|++++|++
T Consensus 507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 7777777777777 777777777777777777777777777777777777777777666655
No 72
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.85 E-value=3.5e-21 Score=209.91 Aligned_cols=141 Identities=22% Similarity=0.304 Sum_probs=124.7
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.+++.+|||+|.|+|++|+|||.|||++|+||++||.++|.|+...+|+|+ ++++++|+.+|+|+|||+++ ++.+++
T Consensus 169 ~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~~L~~iYt~~~~-~~~~~~ 245 (312)
T 3hqi_A 169 WENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKMA 245 (312)
T ss_dssp HHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEEC--SSCHHHHHHHHHHHHHSCCT-THHHHH
T ss_pred HhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEec--CCCHHHHHHHHHhhcCCCCC-ChHHHH
Confidence 457889999999999999999999999999999999999999999999999 59999999999999999999 889999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhHHHHHHHHHhhcccCCC
Q 003249 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLAVSCLQVFLRELPDCLN 320 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~~l~ 320 (836)
.+||.+|++|.++.|+..|+..+...+ +.+++..++.+|..++...|...|++++.+++...+.
T Consensus 246 ~~ll~~A~~~~~~~l~~~c~~~l~~~~-~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~ 309 (312)
T 3hqi_A 246 DDLLAAADKYALERLKVMCEDALCSNL-SVENAAEILILADLHSADQLKTQAVDFINYHATDVLE 309 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998776 5678999999999999999999999999998866543
No 73
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.85 E-value=3e-20 Score=201.62 Aligned_cols=236 Identities=12% Similarity=0.091 Sum_probs=199.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHH
Q 003249 485 RASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE--DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLV 561 (836)
Q Consensus 485 rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg--~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l 561 (836)
.-.++......++|+..++++|.++|+ ..+|+.||.++..+| ++++|+..++++|+++|++..
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~-------------- 104 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ-------------- 104 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH--------------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH--------------
Confidence 333444555667999999999999997 688999999999999 999999999999998888743
Q ss_pred HHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcC
Q 003249 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLL----LRL---NCPEAAMRSLQLARQHA 634 (836)
Q Consensus 562 ~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l----~~l---~~~~eAl~~~~~Al~l~ 634 (836)
+|+.|+.++ ..+ ++++++++.++++++.+
T Consensus 105 --------------------------------------------aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~ 140 (306)
T 3dra_A 105 --------------------------------------------IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD 140 (306)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC
T ss_pred --------------------------------------------HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC
Confidence 445555555 455 78999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchH
Q 003249 635 ASDHERLVYEGWILYDTSHCE--EGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712 (836)
Q Consensus 635 P~~~eal~~~G~il~~~G~~e--eAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~ 712 (836)
|.+..+|++||+++..+|+++ ++++.++++|+++|++ .
T Consensus 141 pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N----------------------------------------~ 180 (306)
T 3dra_A 141 PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN----------------------------------------N 180 (306)
T ss_dssp TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC----------------------------------------H
T ss_pred CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC----------------------------------------H
Confidence 999999999999999999999 9999999999998876 2
Q ss_pred HHHHHHHHHHHhcCC------HHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHH-HHHHHHHhc---CCCHHH
Q 003249 713 QALNNLGSVYVDCGQ------LDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYE-EMTKLIKKA---RNNASA 780 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~------~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~-~~~kaie~~---p~~a~A 780 (836)
.||+++|.++...|+ +++++++++++|.++|. .|..+++.++...|+..+++. -..++++++ |++..|
T Consensus 181 sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 260 (306)
T 3dra_A 181 SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFA 260 (306)
T ss_dssp HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHH
T ss_pred HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHH
Confidence 578888888888887 99999999999998764 799999999999999766665 444456665 889888
Q ss_pred HHHHH----HccCHHHHHHHHHHhHh-cCCCCcccchhhHHHH
Q 003249 781 YEKRS----EYCDRELTRADLEMVTQ-LDPLRVYPYRYRAAGL 818 (836)
Q Consensus 781 y~~r~----~~~~~~~A~~D~~~Ai~-l~P~~~~~y~~r~~~~ 818 (836)
+..+. +.|+.++|+.-|+.+++ +||-+..-+.+|+..+
T Consensus 261 l~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 261 LETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 87773 45899999999999996 8999999999998653
No 74
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.84 E-value=3e-19 Score=195.13 Aligned_cols=153 Identities=11% Similarity=0.070 Sum_probs=136.7
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCC--H
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALED--Y 528 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~----------~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~--~ 528 (836)
++|+..+++++.+||++..+|++|+.++..+++ +++++..++++|..+|. +.+|++|++++..+|+ +
T Consensus 47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 689999999999999999999999999998887 78999999999999995 7899999999999984 7
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHH
Q 003249 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF 608 (836)
Q Consensus 529 ~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~ 608 (836)
++++..++++++++|.+ ..+|.
T Consensus 127 ~~EL~~~~k~l~~dprN----------------------------------------------------------y~AW~ 148 (331)
T 3dss_A 127 ARELELCARFLEADERN----------------------------------------------------------FHCWD 148 (331)
T ss_dssp HHHHHHHHHHHHHCTTC----------------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHhCCCC----------------------------------------------------------HHHHH
Confidence 77777777777666655 45677
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcccchH
Q 003249 609 RQSLLLLRLNC-PEAAMRSLQLARQHAASDHERLVYEGWILYDT--------------SHCEEGLRKAEESIQMKRSFE 672 (836)
Q Consensus 609 ~~gl~l~~l~~-~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~--------------G~~eeAl~~~~~Ai~l~p~~~ 672 (836)
.|+.++..+|+ ++++++.+.++++.+|++..+|.++|.++..+ +.++++++.++++|.++|++.
T Consensus 149 ~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~ 227 (331)
T 3dss_A 149 YRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 227 (331)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 88888888898 69999999999999999999999999999988 679999999999999999883
No 75
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.84 E-value=3.6e-20 Score=188.91 Aligned_cols=67 Identities=10% Similarity=0.121 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHh
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLEL----------------RFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~----------------rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
.+..++.+|..+...|++++|+..|+++++++|+ +.+++. +|.+|..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4566777777777777888888877777777775 455655 44444444444444444444444
Q ss_pred hCCC
Q 003249 541 LSPD 544 (836)
Q Consensus 541 l~P~ 544 (836)
++|+
T Consensus 83 ~~p~ 86 (208)
T 3urz_A 83 KAPN 86 (208)
T ss_dssp HCTT
T ss_pred HCCC
Confidence 4433
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.83 E-value=5e-20 Score=197.90 Aligned_cols=197 Identities=11% Similarity=0.019 Sum_probs=153.9
Q ss_pred hhHHHHHHHHHhcCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHhc-CC
Q 003249 462 DKRWEDLDKATALDP------TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLAL-ED 527 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP------~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-------~~~~~~rg~~~~~l-g~ 527 (836)
++|+..|.+|+++.+ ..+.+|.++|.++..+|++++|+..|++|+++.|. ..++.++|.+|..+ |+
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~ 133 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD 133 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 444444555555432 12578999999999999999999999999999873 24677899999996 99
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHH
Q 003249 528 YQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLY 607 (836)
Q Consensus 528 ~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~ 607 (836)
+++|+..|++|+++.|+..... ..+..+
T Consensus 134 ~~~A~~~~~~Al~~~~~~~~~~----------------------------------------------------~~~~~~ 161 (292)
T 1qqe_A 134 YAKAIDCYELAGEWYAQDQSVA----------------------------------------------------LSNKCF 161 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHH----------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCChH----------------------------------------------------HHHHHH
Confidence 9999999999999987542100 013457
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHH
Q 003249 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-------RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (836)
Q Consensus 608 ~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e-------al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~a 680 (836)
.++|.++.++|++++|+..|+++++++|++.. ++.++|.++..+|++++|+..|+++++++|++...
T Consensus 162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~------ 235 (292)
T 1qqe_A 162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS------ 235 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc------
Confidence 88899999999999999999999999998764 68999999999999999999999999999987210
Q ss_pred hhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCchh
Q 003249 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV--DCGQLDLAADCYSNALKIRHTR 745 (836)
Q Consensus 681 L~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~--~~g~~deAi~~y~kAL~l~~~~ 745 (836)
+....+.+++.+|. +.+++++|+..|+++++++|..
T Consensus 236 -----------------------------~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 236 -----------------------------RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -------------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 01234566677665 6789999999999999998864
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.83 E-value=7.1e-19 Score=195.19 Aligned_cols=243 Identities=9% Similarity=-0.009 Sum_probs=190.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh-hhhhH
Q 003249 481 PYMYRASSLMTKQNVEAALAEINRILGF---KLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM-FEGRV 552 (836)
Q Consensus 481 ay~~rg~~l~~~g~~~eAi~~~~kai~l---~P~----~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~-~~~~~ 552 (836)
.|+.+|..+...|++++|+..|++|+++ .|+ ..+++++|.+|..+|++++|+..|++|+++.|+... .....
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4555999999999999999999999998 333 256788999999999999999999999999877643 22222
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHH
Q 003249 553 AASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP------KGVLYFRQSLLLLRLNCPEAAMRS 626 (836)
Q Consensus 553 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~------~~~~~~~~gl~l~~l~~~~eAl~~ 626 (836)
.....++.++...+++++| +..+.+++++.|. .+.+++++|.++..+|++++|+..
T Consensus 185 ~~~~~lg~~~~~~g~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDA------------------ISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHH------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3344556667777777776 5556666665433 336899999999999999999999
Q ss_pred HHHHHH-----cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHH
Q 003249 627 LQLARQ-----HA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLED 700 (836)
Q Consensus 627 ~~~Al~-----l~-P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~ 700 (836)
|++|++ .+ |..+.+++++|.++..+|++++|+..|++|+++.+...
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------- 298 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG---------------------------- 298 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------------------
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----------------------------
Confidence 999998 46 88889999999999999999999999999998754320
Q ss_pred HhcCCccccchHHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCC-chhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 003249 701 ALKCPSDRLRKGQALNNLGSVYVDCGQ---LDLAADCYSNALKIR-HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARN 776 (836)
Q Consensus 701 Al~~~~~~~~~~~a~~nlG~~y~~~g~---~deAi~~y~kAL~l~-~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~ 776 (836)
.+.....+.++|.+|...|+ +++|+..++++-... ...++..+|.++..+|++++|+..|++++++..+
T Consensus 299 -------~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 299 -------DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp -------CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred -------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 00011236789999999999 888888888872211 1357889999999999999999999999987654
No 78
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.83 E-value=7.9e-21 Score=174.22 Aligned_cols=101 Identities=20% Similarity=0.388 Sum_probs=90.2
Q ss_pred CCCCccccEEEEeCC----eEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCC
Q 003249 176 SGDQVLRNVVFRIHE----EKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVT 251 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~----~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~ 251 (836)
.+++.+|||+|+|+| ++|+|||.||+++|+||++||+++|.|+. .+|+|+ ++++++|+.+++|+|||++. ++
T Consensus 3 ~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~--~~~~~~f~~~l~~iYt~~~~-~~ 78 (109)
T 2vkp_A 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIP--DVEPAAFLILLKYMYSDEID-LE 78 (109)
T ss_dssp TTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEET--TSCHHHHHHHHHHHHHCCCC-CC
T ss_pred ccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeC--CCCHHHHHHHHHHHcCCCcc-CC
Confidence 467899999999998 89999999999999999999999999999 999999 59999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 003249 252 PNLLLEILIFANKFCCERLKDACDRKLAS 280 (836)
Q Consensus 252 ~~~v~~lL~aA~~~c~~~L~~~c~~~l~~ 280 (836)
.+++.+|+.+|+++.++.|+..|...+..
T Consensus 79 ~~~~~~ll~~A~~~~~~~L~~~c~~~l~~ 107 (109)
T 2vkp_A 79 ADTVLATLYAAKKYIVPALAKACVNFLET 107 (109)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 99999999999999999999999988754
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=199.78 Aligned_cols=250 Identities=11% Similarity=0.005 Sum_probs=189.6
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGF--------KLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 475 dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l--------~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
+|..+.++..+|.++...|++++|+..|++++++ +|. ..++..+|.++..+|++++|+..|++++++....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999996 343 4668889999999999999999999999873110
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003249 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (836)
Q Consensus 546 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~ 625 (836)
. -..+|..+.+++++|.++..+|++++|+.
T Consensus 103 ~--------------------------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 132 (311)
T 3nf1_A 103 L--------------------------------------------------GKDHPAVAATLNNLAVLYGKRGKYKEAEP 132 (311)
T ss_dssp H--------------------------------------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred h--------------------------------------------------CCCChHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 0 00123345678899999999999999999
Q ss_pred HHHHHHHcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHH
Q 003249 626 SLQLARQHA--------ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 697 (836)
Q Consensus 626 ~~~~Al~l~--------P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~ 697 (836)
.|++++++. |....++.++|.++..+|++++|++.|++++++.... ..
T Consensus 133 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~---------- 188 (311)
T 3nf1_A 133 LCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK--------------LG---------- 188 (311)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--------------SC----------
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--------------hC----------
Confidence 999999985 7778899999999999999999999999999752100 00
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-----------------hHHhhHHHHHHhcCCH
Q 003249 698 LEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----------------RAHQGLARVHFLKNNK 760 (836)
Q Consensus 698 l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-----------------~A~~~la~~~~~~g~~ 760 (836)
++.+....++.++|.+|..+|++++|+..|++++++.+. ......+..+...+.+
T Consensus 189 --------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 189 --------PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred --------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 011223578999999999999999999999999975221 2233444455566677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHH----ccCHHHHHHHHHHhHhcCCC
Q 003249 761 TTAYEEMTKLIKKARNNASAYEKRSE----YCDRELTRADLEMVTQLDPL 806 (836)
Q Consensus 761 ~~A~~~~~kaie~~p~~a~Ay~~r~~----~~~~~~A~~D~~~Ai~l~P~ 806 (836)
.+|...+.++++..|..+.+|..++. .|++++|+..|++|+++.|.
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 78888899999999999999999864 48999999999999999885
No 80
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.83 E-value=3.3e-20 Score=223.27 Aligned_cols=187 Identities=11% Similarity=-0.038 Sum_probs=130.8
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH--------hcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003249 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL--------GFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSP 543 (836)
Q Consensus 473 ~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai--------~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P 543 (836)
.++|+++.+++..| ...|++++|++.|++++ +.+|+ .++++.+|.++..+|++++|+..|+++++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 67777777777766 67788888888888888 77776 46677778888888888888888888887766
Q ss_pred CchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 003249 544 DYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAA 623 (836)
Q Consensus 544 ~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eA 623 (836)
++ +.+|+++|.++..+|++++|
T Consensus 465 ~~----------------------------------------------------------~~a~~~lg~~~~~~g~~~~A 486 (681)
T 2pzi_A 465 WR----------------------------------------------------------WRLVWYRAVAELLTGDYDSA 486 (681)
T ss_dssp CC----------------------------------------------------------HHHHHHHHHHHHHHTCHHHH
T ss_pred ch----------------------------------------------------------HHHHHHHHHHHHHcCCHHHH
Confidence 65 34566777777788888888
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHHHHHHHh
Q 003249 624 MRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDAL 702 (836)
Q Consensus 624 l~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al 702 (836)
++.|++|++++|+++++++++|.++..+|++++ ++.|++|++++|++ .+++++|.++...+ ....++..|++|+
T Consensus 487 ~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g----~~~~A~~~~~~al 561 (681)
T 2pzi_A 487 TKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEG----DRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT----CHHHHHHHHHTSC
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC----CHHHHHHHHHhhc
Confidence 888888888888888888888888888888888 88888888887776 45555655554433 4455556666666
Q ss_pred cCCccccchHHHHHHHHHHHHhcCCH
Q 003249 703 KCPSDRLRKGQALNNLGSVYVDCGQL 728 (836)
Q Consensus 703 ~~~~~~~~~~~a~~nlG~~y~~~g~~ 728 (836)
+..++. ..++.++|.+|...|+.
T Consensus 562 ~l~P~~---~~a~~~~~~~~~~~~~~ 584 (681)
T 2pzi_A 562 PTSRHF---TTARLTSAVTLLSGRST 584 (681)
T ss_dssp TTSTTH---HHHHHHHHHHTC-----
T ss_pred ccCccc---HHHHHHHHHHHHccCCC
Confidence 554433 45666666666555543
No 81
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.83 E-value=9.8e-20 Score=185.64 Aligned_cols=184 Identities=13% Similarity=0.018 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHH
Q 003249 512 LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (836)
Q Consensus 512 ~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~ 591 (836)
.+.+..+|..+...|++++|+..|+++++++|+++.++...+. ....
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~------------------------------~~~~--- 50 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV------------------------------DKNS--- 50 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS------------------------------CTTS---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh------------------------------cchh---
Confidence 4567789999999999999999999999999998764432110 0000
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
...+..++++|.++.+.|++++|+..|+++++++|+++++++++|.++..+|++++|+..|+++++++|++
T Consensus 51 ---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 51 ---------EISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred ---------hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 00134567899999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHcCCch-hHHh
Q 003249 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG--QLDLAADCYSNALKIRHT-RAHQ 748 (836)
Q Consensus 672 ~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g--~~deAi~~y~kAL~l~~~-~A~~ 748 (836)
+.+|+++|.+|...| +.++|+.+|++++...|. .+++
T Consensus 122 ----------------------------------------~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 161 (208)
T 3urz_A 122 ----------------------------------------LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161 (208)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 468899999987776 456778899998877654 5788
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 003249 749 GLARVHFLKNNKTTAYEEMTKLIKKARNN 777 (836)
Q Consensus 749 ~la~~~~~~g~~~~A~~~~~kaie~~p~~ 777 (836)
++|.++...|++++|+..|+++|+++|+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 89999999999999999999999999975
No 82
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.83 E-value=1.8e-21 Score=187.57 Aligned_cols=125 Identities=23% Similarity=0.320 Sum_probs=95.6
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.+++.+|||+|.|+|++|+|||.||+++|+||++||.++|.|+...+|+|+ ++++++|+.+++|+|||++. ++.+++
T Consensus 20 ~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~~~~~l~~~Y~~~~~-~~~~~~ 96 (145)
T 4eoz_A 20 WENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIN--DVEPEVFKEMMCFIYTGKAP-NLDKMA 96 (145)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEEC--SSCHHHHHHHHHHHHHSCCT-TGGGTH
T ss_pred HhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEec--CCCHHHHHHHHHhhccCccC-CcHHHH
Confidence 457889999999999999999999999999999999999999999999999 59999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHcCChhhH
Q 003249 256 LEILIFANKFCCERLKDACDRKLASLVASREDAVELMGYAIEENSPVLA 304 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l~~~v~~~~~a~~~~~~a~~~~a~~L~ 304 (836)
.+|+.+|++|+++.|+..|+..+...+ +.++++.++..|..+++..|.
T Consensus 97 ~~ll~~A~~~~~~~l~~~c~~~l~~~l-~~~n~~~~l~~A~~~~~~~Lk 144 (145)
T 4eoz_A 97 DDLLAAADKYALERLKVMCEDALCSNL-SVENAAEILILADLHSADQLK 144 (145)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCHHHhc
Confidence 999999999999999999999888766 578999999999999887764
No 83
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.83 E-value=1.3e-20 Score=175.91 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=90.9
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.+++.+|||+|.|+|++|+|||.||+++|+||++||+++|.|+...+|+|+ ++++++|+.+++|+|||++. ++.+++
T Consensus 20 ~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~--~~~~~~f~~ll~~~Yt~~~~-~~~~~~ 96 (120)
T 2if5_A 20 RTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEID--FVSAEALTALMDFAYTATLT-VSTANV 96 (120)
T ss_dssp HHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECC--SSCHHHHHHHHHHHHHSCCC-CCGGGH
T ss_pred HhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHHH
Confidence 457889999999999999999999999999999999999999999999999 59999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 003249 256 LEILIFANKFCCERLKDACDRKL 278 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l 278 (836)
.+|+.+|+++.++.|+..|+..+
T Consensus 97 ~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 97 GDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh
Confidence 99999999999999999998764
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=1.5e-19 Score=200.71 Aligned_cols=242 Identities=10% Similarity=0.022 Sum_probs=193.7
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHhc----c----chhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHh
Q 003249 384 LAFHQLGCVRLLRKEYDEAEHLFEAAVNA----G----HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQER 455 (836)
Q Consensus 384 ~a~~~lG~~~~~~g~y~eAi~~f~~Al~l----~----~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r 455 (836)
..++.+|..+...|++++|+..|++|+++ + ...++..+|.++...|++++|+..+.+++.+.+..+.-
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~---- 179 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY---- 179 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc----
Confidence 45667999999999999999999999986 1 23467888999999999888888877776654432210
Q ss_pred hhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhcCCH
Q 003249 456 SLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLELRFCFFLALEDY 528 (836)
Q Consensus 456 ~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-------~~~~~rg~~~~~lg~~ 528 (836)
.|..+.++.++|.++..+|++++|+..|++|+++.|.. .+++++|.+|..+|++
T Consensus 180 -------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 180 -------------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred -------------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 12235689999999999999999999999999986621 3688899999999999
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcC-CCCHHHH
Q 003249 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD-APKGVLY 607 (836)
Q Consensus 529 ~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~-P~~~~~~ 607 (836)
++|+..|++++++.+.. .+ |..+.++
T Consensus 241 ~~A~~~~~~al~~~~~~-----------------------------------------------------~~~~~~~~~~ 267 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEES-----------------------------------------------------NILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHHHHHHHHT-----------------------------------------------------TCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-----------------------------------------------------ccchhHHHHH
Confidence 99999999999873211 11 4456788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcccchHHHHHHHH
Q 003249 608 FRQSLLLLRLNCPEAAMRSLQLARQH-----AASDHERLVYEGWILYDTSH---CEEGLRKAEESIQMKRSFEAFFLKAY 679 (836)
Q Consensus 608 ~~~gl~l~~l~~~~eAl~~~~~Al~l-----~P~~~eal~~~G~il~~~G~---~eeAl~~~~~Ai~l~p~~~a~~~~a~ 679 (836)
+++|.++.++|++++|+..+++++++ +|.....+..+|.++...|+ +++|+..++++ ..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~------------ 334 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-ML------------ 334 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TC------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cC------------
Confidence 99999999999999999999999998 45555557889999999999 66666655544 11
Q ss_pred HhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003249 680 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (836)
Q Consensus 680 aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~ 742 (836)
.+....++.++|.+|..+|++++|+..|++|+++.
T Consensus 335 ----------------------------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 335 ----------------------------YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11124688999999999999999999999999873
No 85
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=9.5e-20 Score=193.22 Aligned_cols=267 Identities=12% Similarity=0.014 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcC
Q 003249 380 RQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (836)
Q Consensus 380 ~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~ 459 (836)
+..+.+++.+|.++...|++++|+..|++++++.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---------------------------------------------- 57 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDL---------------------------------------------- 57 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------------------------
Confidence 3456788888888888888888888888777631
Q ss_pred ChhhHHHHHHHHH-hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC-hHHHHHHHHHHHhcCCHH
Q 003249 460 EGDKRWEDLDKAT-ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--------LA-LECLELRFCFFLALEDYQ 529 (836)
Q Consensus 460 ~~~eAi~d~~kAi-~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~--------P~-~~~~~~rg~~~~~lg~~~ 529 (836)
.+.. .-+|..+.++..+|.++...|++++|+..|.+++++. |. ..++.++|.++..+|+++
T Consensus 58 ---------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 128 (311)
T 3nf1_A 58 ---------EKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 128 (311)
T ss_dssp ---------HHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred ---------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHH
Confidence 0000 0134456788899999999999999999999999883 33 356778999999999999
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHH
Q 003249 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (836)
Q Consensus 530 ~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~ 609 (836)
+|+..|++++++..... -..+|....++.+
T Consensus 129 ~A~~~~~~a~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 129 EAEPLCKRALEIREKVL--------------------------------------------------GKDHPDVAKQLNN 158 (311)
T ss_dssp HHHHHHHHHHHHHHHHH--------------------------------------------------CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--------------------------------------------------CCCChHHHHHHHH
Confidence 99999999998731000 0011334567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 003249 610 QSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (836)
Q Consensus 610 ~gl~l~~l~~~~eAl~~~~~Al~l--------~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL 681 (836)
+|.++..+|++++|++.|++++++ +|..+.+++.+|.++..+|++++|+..|++++++.|... +
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~ 230 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE--------F 230 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------C
Confidence 999999999999999999999998 888899999999999999999999999999998765431 0
Q ss_pred hccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCC
Q 003249 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLKNN 759 (836)
Q Consensus 682 ~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~ 759 (836)
+ ..++.... .......+...+..+...+.+.+|+..|.+++...|. .++.++|.++...|+
T Consensus 231 ~--~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 293 (311)
T 3nf1_A 231 G--SVDDENKP---------------IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK 293 (311)
T ss_dssp C--------CC---------------HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC
T ss_pred C--CCCcchHH---------------HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC
Confidence 0 00111100 0011345677777788888888999999999887654 678899999999999
Q ss_pred HHHHHHHHHHHHHhcCC
Q 003249 760 KTTAYEEMTKLIKKARN 776 (836)
Q Consensus 760 ~~~A~~~~~kaie~~p~ 776 (836)
+++|+..|++++++.|+
T Consensus 294 ~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 294 FEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998875
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.82 E-value=3.7e-18 Score=188.13 Aligned_cols=324 Identities=11% Similarity=-0.011 Sum_probs=239.4
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccchh-------hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHH
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIY-------SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ 453 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~-------a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~ 453 (836)
..+.++..+|.++...|++++|+..+++++...+.. ++..+|.++...|++++|...+.+++...+..+..+.
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 345677889999999999999999999999874322 4567777788888887777776666555432222110
Q ss_pred HhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------C-hHHHHHHHHHHHh
Q 003249 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--------A-LECLELRFCFFLA 524 (836)
Q Consensus 454 ~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P--------~-~~~~~~rg~~~~~ 524 (836)
...++.++|.++..+|++++|+..|++++++.+ . ..++.++|.++..
T Consensus 92 ------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 92 ------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp ------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH
Confidence 124578899999999999999999999999753 2 2456679999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCH
Q 003249 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (836)
Q Consensus 525 lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~ 604 (836)
+|++++|+..+++++++.|.... |...
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~-----------------------------------------------------~~~~ 174 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQP-----------------------------------------------------QQQL 174 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCG-----------------------------------------------------GGGH
T ss_pred hcCHHHHHHHHHHHHHHhhccCc-----------------------------------------------------HHHH
Confidence 99999999999999999886521 1123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH-HHHH----HHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHH
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DH-ERLV----YEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 677 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~--~~-eal~----~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~ 677 (836)
.++..+|.++...|++++|++.+++++++.+. ++ .... .++.++..+|++++|+..+++++.+.|...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~----- 249 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN----- 249 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc-----
Confidence 46778889999999999999999999987433 32 2211 355668899999999999999987654220
Q ss_pred HHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--------hhHHhh
Q 003249 678 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--------TRAHQG 749 (836)
Q Consensus 678 a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--------~~A~~~ 749 (836)
.....++.++|.++...|++++|++.+++++++.+ ..++..
T Consensus 250 -------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 250 -------------------------------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp -------------------------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 00023578899999999999999999999988622 247889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHccCHHHHHHHHHHhHhcCCCCcccchhhHHHHHHH
Q 003249 750 LARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRVYPYRYRAAGLIVF 821 (836)
Q Consensus 750 la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~~~~ 821 (836)
+|.++...|++++|...+.+++++.+....... -.+.| +....-+++.+..+|. ..+...++.-+.+.
T Consensus 299 la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~-~~~~g--~~~~~ll~~~~~~~~~-~~~~~~~~~~~~~~ 366 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISH-FVIEG--EAMAQQLRQLIQLNTL-PELEQHRAQRILRE 366 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHH-HHTTH--HHHHHHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhccccHHHH-HHHcc--HHHHHHHHHHHhCCCC-chHHHHHHHHHHHH
Confidence 999999999999999999999988653111000 01122 5566677888888887 33555555443333
No 87
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.81 E-value=2.3e-18 Score=188.11 Aligned_cols=254 Identities=13% Similarity=0.028 Sum_probs=188.3
Q ss_pred HhcCCHH-HHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhh
Q 003249 490 MTKQNVE-AALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDN 567 (836)
Q Consensus 490 ~~~g~~~-eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~ 567 (836)
.+.|.++ +|+..++++|.+||+ ..+|+.|+.++..+|+. .+|+.. ...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~------------~~~~~~------------------~~~ 89 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE------------KSPEES------------------AAL 89 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH------------SCHHHH------------------HHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc------------ccchhh------------------hHH
Confidence 3455554 789999999999996 57888888887766542 111110 001
Q ss_pred HhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHH
Q 003249 568 WTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC--PEAAMRSLQLARQHAASDHERLVYEG 645 (836)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~--~~eAl~~~~~Al~l~P~~~eal~~~G 645 (836)
++ .+|..+++++..+|++..+|+.|+.++..+++ ++++++.+.++++++|.+..+|.++|
T Consensus 90 l~------------------~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~ 151 (331)
T 3dss_A 90 VK------------------AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRR 151 (331)
T ss_dssp HH------------------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HH------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 11 13667788888889999999999999999995 89999999999999999999999999
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhcccch-HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Q 003249 646 WILYDTSH-CEEGLRKAEESIQMKRSF-EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV 723 (836)
Q Consensus 646 ~il~~~G~-~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~ 723 (836)
+++...|+ ++++++.++++|+++|++ .|++.++..+.....+.... +..-.
T Consensus 152 ~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~---------------------------~~~~~ 204 (331)
T 3dss_A 152 FVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG---------------------------PQGRL 204 (331)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC---------------------------------CC
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccc---------------------------ccccc
Confidence 99999999 699999999999999887 45555554443321100000 00000
Q ss_pred hcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhc-----------CCHHHHHHHHHHHHHhcCCCHHHHHHHH-----
Q 003249 724 DCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLK-----------NNKTTAYEEMTKLIKKARNNASAYEKRS----- 785 (836)
Q Consensus 724 ~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~-----------g~~~~A~~~~~kaie~~p~~a~Ay~~r~----- 785 (836)
..+.++++++++.+||.++|. .+.+.+..++... +.++++++.+.++|+++|++.+++....
T Consensus 205 ~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~ 284 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 284 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHh
Confidence 115689999999999998765 5776565555554 4589999999999999999999876652
Q ss_pred --HccCHHHHHHHHHHhHhcCCCCcccchhhHHHH
Q 003249 786 --EYCDRELTRADLEMVTQLDPLRVYPYRYRAAGL 818 (836)
Q Consensus 786 --~~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~ 818 (836)
..|..++....+.+.+++||.+.-=|.--+.-+
T Consensus 285 ~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 285 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 246788999999999999999887666544433
No 88
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.81 E-value=4.6e-20 Score=174.06 Aligned_cols=100 Identities=22% Similarity=0.398 Sum_probs=95.2
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEe-cCCCCCHHHHHHHHHhhccCcCCCCCHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDL-SENNISPSGLRIISDFSVTGSLNGVTPNL 254 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l-~~~~is~~~~~~ll~f~Ytg~l~~~~~~~ 254 (836)
..++.+|||+|+|+|++|+|||.||+++|+||++||.++|.| ...+|+| + ++++++|+.+|+|+|||++. ++.++
T Consensus 24 ~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~~~i~l~~--~~~~~~f~~ll~~~Ytg~~~-~~~~~ 99 (127)
T 1r29_A 24 RSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NLSVINLDP--EINPEGFNILLDFMYTSRLN-LREGN 99 (127)
T ss_dssp HHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TCSEEECCT--TSCHHHHHHHHHHHHHSCCC-CCTTT
T ss_pred HhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CCCEEEeCC--CCCHHHHHHHHHHHcCCCcC-cCHHH
Confidence 467899999999999999999999999999999999999999 7899999 6 69999999999999999999 99999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 003249 255 LLEILIFANKFCCERLKDACDRKLA 279 (836)
Q Consensus 255 v~~lL~aA~~~c~~~L~~~c~~~l~ 279 (836)
+.+|+.+|+++.++.|+..|+..+.
T Consensus 100 ~~~ll~~A~~~~i~~L~~~c~~~l~ 124 (127)
T 1r29_A 100 IMAVMATAMYLQMEHVVDTCRKFIK 124 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.80 E-value=1.4e-18 Score=182.37 Aligned_cols=191 Identities=11% Similarity=-0.010 Sum_probs=164.5
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHH
Q 003249 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA 673 (836)
Q Consensus 597 l~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a 673 (836)
.+.+|+++..++.+|..+.+.|++++|+..|+++++.+|++ +++++.+|.+++.+|++++|+..|++++++.|+..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~- 86 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP- 86 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-
Confidence 45689999999999999999999999999999999999999 99999999999999999999999999999877541
Q ss_pred HHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHcCCch-
Q 003249 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD--------CGQLDLAADCYSNALKIRHT- 744 (836)
Q Consensus 674 ~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~--------~g~~deAi~~y~kAL~l~~~- 744 (836)
..+.+++++|.+|.. .|++++|+..|++++++.|.
T Consensus 87 ------------------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 87 ------------------------------------RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp ------------------------------------THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred ------------------------------------hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 124689999999999 99999999999999998664
Q ss_pred -hHH-----------------hhHHHHHHhcCCHHHHHHHHHHHHHhcCC---CHHHHHHHHH----c----------cC
Q 003249 745 -RAH-----------------QGLARVHFLKNNKTTAYEEMTKLIKKARN---NASAYEKRSE----Y----------CD 789 (836)
Q Consensus 745 -~A~-----------------~~la~~~~~~g~~~~A~~~~~kaie~~p~---~a~Ay~~r~~----~----------~~ 789 (836)
.+. +++|.++...|++++|+..|+++++..|+ .+.+++.++. . |+
T Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~ 210 (261)
T 3qky_A 131 ELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPER 210 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccch
Confidence 233 88999999999999999999999999999 4667777642 2 78
Q ss_pred HHHHHHHHHHhHhcCCCCc---ccchhhHHHHHHHhhh
Q 003249 790 RELTRADLEMVTQLDPLRV---YPYRYRAAGLIVFLNL 824 (836)
Q Consensus 790 ~~~A~~D~~~Ai~l~P~~~---~~y~~r~~~~~~~~~~ 824 (836)
+++|+..|+++++++|+.. .++...+.++...++.
T Consensus 211 ~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 211 YRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999985 4555566666665554
No 90
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.80 E-value=4.5e-20 Score=178.20 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=89.8
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCc--CCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFME--SLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN 253 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~E--s~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~ 253 (836)
..++.+|||+|+|+|++|+|||.||+++|+||++||.++|.| +...+|.|+ ++++++|+.+|+|+|||++. ++.+
T Consensus 42 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~--~v~~~~f~~lL~fiYtg~~~-i~~~ 118 (144)
T 2ppi_A 42 REESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELE--GISVMVMREILDYIFSGQIR-LNED 118 (144)
T ss_dssp TC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECC--SSCHHHHHHHHHHHTTSCCC-CCTT
T ss_pred HhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeC--CCCHHHHHHHHHHHhCCCCC-CCHH
Confidence 678999999999999999999999999999999999999976 677899999 59999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 003249 254 LLLEILIFANKFCCERLKDACDRK 277 (836)
Q Consensus 254 ~v~~lL~aA~~~c~~~L~~~c~~~ 277 (836)
++.+|+.+|++++++.|+..|+..
T Consensus 119 ~v~~ll~~A~~l~i~~L~~~C~~~ 142 (144)
T 2ppi_A 119 TIQDVVQAADLLLLTDLKTLCCEF 142 (144)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHH
Confidence 999999999999999999999764
No 91
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1.5e-16 Score=196.13 Aligned_cols=365 Identities=11% Similarity=0.005 Sum_probs=256.6
Q ss_pred HHHHHHhhccchHHHHHHHHHHHhccch------hh------------------H---------hhHHHHHHhcCCHHHH
Q 003249 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHI------YS------------------I---------AGLARLGYIKGHKLWA 434 (836)
Q Consensus 388 ~lG~~~~~~g~y~eAi~~f~~Al~l~~~------~a------------------~---------~~la~~~~~~G~~~~A 434 (836)
.....+...|.+.+|++.|++++ +.+. .. + ..+|.++...|++++|
T Consensus 990 ~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A 990 VTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence 34556778999999999999988 3222 10 0 1236677788888888
Q ss_pred HHHHHHhHhccCCchHHHHHhhhcCChhhHHHHHHHHHhcC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 003249 435 YEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALD--PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL 512 (836)
Q Consensus 435 ~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d~~kAi~ld--P~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~ 512 (836)
+..|+++- .+......+ -+++..+++|+++. .+.+..|+.+|.++.+.|++++||..|.|| -++
T Consensus 1069 f~IYkKa~-~~~~A~~VL---------ie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~ 1134 (1630)
T 1xi4_A 1069 FAIFRKFD-VNTSAVQVL---------IEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDP 1134 (1630)
T ss_pred HHHHHHcC-CHHHHHHHH---------HHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CCh
Confidence 88888762 111111112 23444556655554 588999999999999999999999999887 457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc-hhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHH
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDY-RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~-~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~ 591 (836)
+.|...|.++.++|+|++|++.|..|++.+|+. +... ++..+...++++. +.
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~--------LafaYAKl~rlee-------------------le 1187 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE--------LIFALAKTNRLAE-------------------LE 1187 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH--------HHHHHHhhcCHHH-------------------HH
Confidence 788889999999999999999999999998763 2111 1111111122221 12
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+ + ..| +...|.+.|..+...|+|++|+..|++| ..|..+|.+|.++|++++|++.|++|...
T Consensus 1188 ~f---I-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~---- 1250 (1630)
T 1xi4_A 1188 EF---I-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANST---- 1250 (1630)
T ss_pred HH---H-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH----
Confidence 22 2 234 4467778999999999999999999997 48999999999999999999999999543
Q ss_pred HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhh
Q 003249 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQG 749 (836)
Q Consensus 672 ~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~ 749 (836)
.+|..-+.+.-+ .+.+..|..|.-.-...++-+..++..|...|.|++||..+++||.+++. .....
T Consensus 1251 ~aWkev~~acve-----------~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1251 RTWKEVCFACVD-----------GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred HHHHHHHHHHhh-----------hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 333333333222 12244555544332234677889999999999999999999999999754 33444
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHHhcC-----CCHHHHHHH----HHccCHHHHHHHHHH------------hHhcCCC
Q 003249 750 LAR--VHFLKNNKTTAYEEMTKLIKKAR-----NNASAYEKR----SEYCDRELTRADLEM------------VTQLDPL 806 (836)
Q Consensus 750 la~--~~~~~g~~~~A~~~~~kaie~~p-----~~a~Ay~~r----~~~~~~~~A~~D~~~------------Ai~l~P~ 806 (836)
+|. +.++-++..++++.|.+.+.+.| .++..|... .++|+++.|+.-.-. .+--++.
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~ 1399 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA 1399 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccc
Confidence 555 44556788999999999999888 888888877 357889999832222 2333677
Q ss_pred CcccchhhHHHHHHHh
Q 003249 807 RVYPYRYRAAGLIVFL 822 (836)
Q Consensus 807 ~~~~y~~r~~~~~~~~ 822 (836)
++..|+.=...++...
T Consensus 1400 n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1400 NVELYYRAIQFYLEFK 1415 (1630)
T ss_pred cHHHHHHHHHHHHhhC
Confidence 7777765555555444
No 92
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.79 E-value=7.5e-20 Score=170.72 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=90.5
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.+++.+|||+|+|+|++|+|||.||+++|+||++||.+++ ..+|+|+ ++++++|+.+++|+|||++. ++.+++
T Consensus 19 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~i~l~--~~~~~~f~~ll~~iYtg~~~-~~~~~v 91 (119)
T 3b84_A 19 REKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGNR 91 (119)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred HhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCeEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHHH
Confidence 4578899999999999999999999999999999999987 5789999 69999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 003249 256 LEILIFANKFCCERLKDACDRKLA 279 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l~ 279 (836)
.+|+.+|+++.++.|+..|+..+.
T Consensus 92 ~~ll~~A~~~~i~~L~~~C~~~l~ 115 (119)
T 3b84_A 92 DQVLLAARELRVPEAVELCQSFKP 115 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCC-
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHH
Confidence 999999999999999999987653
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.79 E-value=2.6e-18 Score=178.87 Aligned_cols=227 Identities=14% Similarity=0.042 Sum_probs=161.4
Q ss_pred hhHHHHHHHHHh-------cC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CC-hHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATA-------LD-PTLSYPYMYRASSLMTKQNVEAALAEINRILGFK--------LA-LECLELRFCFFLA 524 (836)
Q Consensus 462 ~eAi~d~~kAi~-------ld-P~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~--------P~-~~~~~~rg~~~~~ 524 (836)
++|+..|++|++ .+ |..+.+|.++|.++...|++++|+..|++++++. |. ..++.++|.++..
T Consensus 18 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 97 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 555555555555 34 7788999999999999999999999999999883 33 3568889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCH
Q 003249 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (836)
Q Consensus 525 lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~ 604 (836)
+|++++|+..|++++.+..... -..+|...
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~--------------------------------------------------~~~~~~~~ 127 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVL--------------------------------------------------GKFHPDVA 127 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHH--------------------------------------------------CTTCHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHc--------------------------------------------------CCCChHHH
Confidence 9999999999999998731100 00124446
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH----
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQH--------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE---- 672 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l--------~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~---- 672 (836)
.+++++|.++..+|++++|+..+++++++ .|..+.++.++|.++..+|++++|+..|++++++.|...
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 207 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV 207 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 78899999999999999999999999999 888899999999999999999999999999998744321
Q ss_pred ------HHHHHHHHhhcccc--CCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 673 ------AFFLKAYALADSSQ--DSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 673 ------a~~~~a~aL~~~~l--~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+...+......+. .......+...+. ......+..+.++.++|.+|..+|++++|+..|++|+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 208 NGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK---ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CSSCCCHHHHHHHHHHTTCCCCC---------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11111111111000 0000000011111 111222334567888888888888888888888888776
No 94
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.79 E-value=1e-19 Score=174.30 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=95.3
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
..++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+ ..|++++ ++++++|+.+|+|+|||++. ++.+++
T Consensus 31 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~~i~l~~-~v~~~~~~~lL~~~Ytg~~~-i~~~~v 106 (138)
T 2z8h_A 31 RKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--LTVTLPE-EVTVKGFEPLIQFAYTAKLI-LSKDNV 106 (138)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--EEEECCT-TSCHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred HhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--ceEEeCC-CCCHHHHHHHHHHhcCCCcc-cCHHHH
Confidence 4678899999999999999999999999999999999999774 5788863 69999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003249 256 LEILIFANKFCCERLKDACDRKLASLV 282 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l~~~v 282 (836)
.+|+.+|++++++.|+..|...+...+
T Consensus 107 ~~ll~~A~~~~i~~L~~~C~~~l~~~l 133 (138)
T 2z8h_A 107 DEVCRCVEFLSVHNIEESCFQFLKFKF 133 (138)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999876654
No 95
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.78 E-value=3.1e-19 Score=166.98 Aligned_cols=97 Identities=21% Similarity=0.322 Sum_probs=90.8
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.+++.+|||+|+|+|++|+|||.||+++|+||++||.++ ..+|+|+ ++++++|+.+++|+|||++. ++.+++
T Consensus 23 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-~~~~~~ 94 (121)
T 1buo_A 23 RLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQHYTLD--FLSPKTFQQILEYAYTATLQ-AKAEDL 94 (121)
T ss_dssp HHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHHHSCCC-CCGGGH
T ss_pred HhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcEEEeC--CCCHHHHHHHHHhhcCCCcC-CCHHHH
Confidence 457889999999999999999999999999999999875 4689999 59999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Q 003249 256 LEILIFANKFCCERLKDACDRKLAS 280 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l~~ 280 (836)
.+|+.+|+++.++.|+..|+..+..
T Consensus 95 ~~ll~~A~~~~i~~L~~~c~~~l~~ 119 (121)
T 1buo_A 95 DDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.78 E-value=4.8e-19 Score=171.30 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=97.6
Q ss_pred chHHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcC
Q 003249 448 LGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE 526 (836)
Q Consensus 448 ~~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg 526 (836)
+|.++..+|.+ ++|++.+.+++..+|+++.+++++|.+|.++|++++|+..|+++|+++|+ +.+|+++|.+|..+|
T Consensus 3 LG~~~~~~~~~---e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADV---ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHH---HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChH---HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34444444444 66777777777777777777777777777777777777777777777775 566677777777777
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHH
Q 003249 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (836)
Q Consensus 527 ~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~ 606 (836)
++++|+..|+++++++|++ +.+
T Consensus 80 ~~~~A~~~~~~al~~~p~~----------------------------------------------------------~~~ 101 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQ----------------------------------------------------------KDL 101 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTC----------------------------------------------------------HHH
T ss_pred chHHHHHHHHHHHHhCCCC----------------------------------------------------------HHH
Confidence 7777777777777766655 234
Q ss_pred HHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHhcCC
Q 003249 607 YFRQSLLLLRLNCPEAAMRS-LQLARQHAASDHERLVYEGWILYDTSH 653 (836)
Q Consensus 607 ~~~~gl~l~~l~~~~eAl~~-~~~Al~l~P~~~eal~~~G~il~~~G~ 653 (836)
|+++|.++.++|++++|... +++|++++|++++++..++.++..+|+
T Consensus 102 ~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 102 VLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 55666666777777666655 467777777777777777777776664
No 97
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=2.6e-17 Score=182.59 Aligned_cols=244 Identities=14% Similarity=0.063 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHhcc--------chhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHH
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAG--------HIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQ 453 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~--------~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~ 453 (836)
....++.+|..+...|++++|+..|++|+++. ...++..+|.++...|++..|+..+.+++...+..+.
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--- 176 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL--- 176 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT---
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC---
Confidence 33467789999999999999999999999862 1246788899999999988888887777665443221
Q ss_pred HhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C----hHHHHHHHHHHHhcC
Q 003249 454 ERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL---A----LECLELRFCFFLALE 526 (836)
Q Consensus 454 ~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P---~----~~~~~~rg~~~~~lg 526 (836)
..+..+.++.++|.++..+|++++|+..|++|+++.+ + ..+++++|.+|..+|
T Consensus 177 --------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 177 --------------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred --------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 0112356889999999999999999999999999743 2 246788999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHH
Q 003249 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (836)
Q Consensus 527 ~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~ 606 (836)
++++|+..|++++++.+.. .+|..+.+
T Consensus 237 ~~~~A~~~~~~al~~~~~~-----------------------------------------------------~~~~~~~~ 263 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREK-----------------------------------------------------VPDLLPKV 263 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHH-----------------------------------------------------CGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh-----------------------------------------------------CChhHHHH
Confidence 9999999999999863211 12444667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcccchHHHHHHH
Q 003249 607 YFRQSLLLLRLNCPEAAMRSLQLARQH-----AASDHERLVYEGWILYDTSH---CEEGLRKAEESIQMKRSFEAFFLKA 678 (836)
Q Consensus 607 ~~~~gl~l~~l~~~~eAl~~~~~Al~l-----~P~~~eal~~~G~il~~~G~---~eeAl~~~~~Ai~l~p~~~a~~~~a 678 (836)
++++|.++.++|++++|+..+++++++ +|.....+..++.++...|+ +++|+..+++.- .
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~----------- 331 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-L----------- 331 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-C-----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-C-----------
Confidence 888999999999999999999999998 45556677888888888888 666666665511 0
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~ 742 (836)
.+....++.++|.+|...|++++|+..|++|+++.
T Consensus 332 -----------------------------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 332 -----------------------------HAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----------------------------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 01123577899999999999999999999999873
No 98
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=165.27 Aligned_cols=98 Identities=21% Similarity=0.316 Sum_probs=89.8
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.+++.+|||+|+|+|++|+|||.||+++|+||++||.++ .+..|+|+.+++++++|+.+++|+|||++. ++.+++
T Consensus 17 ~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~-~~~~~v 91 (116)
T 2vpk_A 17 REAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFLDQSQVKADGFQKLLEFIYTGTLN-LDSWNV 91 (116)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEECCTTTCCHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred HhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEeecCCCCHHHHHHHHHHHcCCCcc-cCHHHH
Confidence 457889999999999999999999999999999999987 356777773359999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 003249 256 LEILIFANKFCCERLKDACDRKL 278 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l 278 (836)
.+|+.+|+++.++.|+..|+..+
T Consensus 92 ~~ll~~A~~~~i~~L~~~C~~~l 114 (116)
T 2vpk_A 92 KEIHQAADYLKVEEVVTKCKIKM 114 (116)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999998865
No 99
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.78 E-value=3.8e-17 Score=179.33 Aligned_cols=249 Identities=14% Similarity=0.088 Sum_probs=157.0
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhc-C-CHHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ-NVEAALAEINRILGFKLA-LECLELRFCFFLAL-E-DYQAALCDVQA 537 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g-~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~l-g-~~~~Ai~d~~~ 537 (836)
++|+..++++|.+||++..+|++||.++..+| .+++++..++++|..+|+ +.+|+.|++++..+ + +++++++.+++
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 67899999999999999999999999999999 599999999999999996 68999999999988 8 88999999999
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 003249 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL 617 (836)
Q Consensus 538 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l 617 (836)
+|+++|++..++...+. +-...+.++.+ ..-.-.+++..+.++|+.+|.+..+|..|+.++.++
T Consensus 151 ~L~~dpkNy~AW~~R~w------vl~~l~~~~~~----------~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 151 SLLPDPKNYHTWAYLHW------LYSHFSTLGRI----------SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HTSSCTTCHHHHHHHHH------HHHHHHHTTCC----------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred HHHhCCCCHHHHHHHHH------HHHHhcccccc----------chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 99998888654433221 11111111100 000001235566666666666666666666666666
Q ss_pred CC-------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCC
Q 003249 618 NC-------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSC 690 (836)
Q Consensus 618 ~~-------~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~ 690 (836)
++ ++++++.+++++.++|+|..+|+++.+++...|+-..=+ ...+-|.... .+++..
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~-----~~~~~~~~~~-----------~~~~~~ 278 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI-----LPAILPYTAS-----------KLNPDI 278 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG-----HHHHGGGTC------------------
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc-----cccccccccc-----------cccccc
Confidence 65 566666666666666666666666666665555431000 0000011000 000000
Q ss_pred hhHHHHHHHHHhcCCcc------ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH-cCCchhH
Q 003249 691 SSTVVSLLEDALKCPSD------RLRKGQALNNLGSVYVDCGQLDLAADCYSNAL-KIRHTRA 746 (836)
Q Consensus 691 ~~~~i~~l~~Al~~~~~------~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL-~l~~~~A 746 (836)
-.+.+.+++.... .++...|+.-++.+|.+.|+.++|+++|+... +.+|.+.
T Consensus 279 ----~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~ 337 (349)
T 3q7a_A 279 ----ETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRA 337 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGH
T ss_pred ----hhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHH
Confidence 0111222222222 13456788888888888888889998888876 5677653
No 100
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=8.7e-16 Score=189.41 Aligned_cols=354 Identities=14% Similarity=0.031 Sum_probs=248.3
Q ss_pred HHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHh--ccCCchHHHHHhhhcCChhhHHH
Q 003249 389 LGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVIS--SVTPLGWMYQERSLYCEGDKRWE 466 (836)
Q Consensus 389 lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~--~~~~~~~ay~~r~~~~~~~eAi~ 466 (836)
+|.++.+.|.|+||...|+++-. +.. .++.++...|++++|++.++++.. .+.++|.++...|. .++|+.
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~--~~~---A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~---~kEAId 1126 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV--NTS---AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGM---VKEAID 1126 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC--HHH---HHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---HHHHHH
Confidence 59999999999999999999732 111 123344577888888888776521 11233444444444 499999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 003249 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (836)
Q Consensus 467 d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~ 546 (836)
.|.+| +++.+|...|.++.+.|++++|+..|..|++.++++..-...|.+|.++++++ ++++|- -.|+..
T Consensus 1127 sYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rle-ele~fI----~~~n~a 1196 (1630)
T 1xi4_A 1127 SYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA-ELEEFI----NGPNNA 1196 (1630)
T ss_pred HHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHH-HHHHHH----hCCCHH
Confidence 99887 88999999999999999999999999999999987654456899999999998 477774 244443
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003249 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (836)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~ 626 (836)
.++ + .+......+.|+.| +..|.+ +..|.++|.++.++|++++|++.
T Consensus 1197 d~~-~------iGd~le~eg~YeeA------------------~~~Y~k--------A~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1197 HIQ-Q------VGDRCYDEKMYDAA------------------KLLYNN--------VSNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHH-H------HHHHHHhcCCHHHH------------------HHHHHh--------hhHHHHHHHHHHHhCCHHHHHHH
Confidence 222 2 23333444555555 334444 35788999999999999999999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCc
Q 003249 627 LQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPS 706 (836)
Q Consensus 627 ~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~ 706 (836)
+++| ++..+|...+.+..+.|+|..|..+... |..+|+.-. .. .......+..+.++.++++++...+
T Consensus 1244 arKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLe--el----i~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1244 ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE--EL----INYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHH--HH----HHHHHHcCCHHHHHHHHHHHhccCh
Confidence 9998 5567888888888888888888777663 555555411 11 1111223455667777777776553
Q ss_pred cccchHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCc-------hhHHhhHHHHHHhcCCHHHHHHHHHHHHHh----
Q 003249 707 DRLRKGQALNNLGSVYVDC--GQLDLAADCYSNALKIRH-------TRAHQGLARVHFLKNNKTTAYEEMTKLIKK---- 773 (836)
Q Consensus 707 ~~~~~~~a~~nlG~~y~~~--g~~deAi~~y~kAL~l~~-------~~A~~~la~~~~~~g~~~~A~~~~~kaie~---- 773 (836)
.. ...+..+|.+|.+- ++..|++..|...+.+.+ ...+..+..+|..-|+++.|+..|-+..+.
T Consensus 1312 aH---~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~ 1388 (1630)
T 1xi4_A 1312 AH---MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 1388 (1630)
T ss_pred hH---hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhh
Confidence 32 45677777777654 478888888888888754 233455555777778888888555554433
Q ss_pred --------cCCCHHHHHHHHH--ccCHHHHHHHHHHhH--hcCCCCc
Q 003249 774 --------ARNNASAYEKRSE--YCDRELTRADLEMVT--QLDPLRV 808 (836)
Q Consensus 774 --------~p~~a~Ay~~r~~--~~~~~~A~~D~~~Ai--~l~P~~~ 808 (836)
.+.|++.|++-.. ++..-+++.|+.+++ +||+.++
T Consensus 1389 ~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~ 1435 (1630)
T 1xi4_A 1389 GQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRA 1435 (1630)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHH
Confidence 6889999999865 356678999999999 8888654
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.77 E-value=7.5e-19 Score=169.90 Aligned_cols=131 Identities=9% Similarity=-0.041 Sum_probs=117.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHH
Q 003249 484 YRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVR 562 (836)
Q Consensus 484 ~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~ 562 (836)
++|.++..+|++++||+.|.+++..+|+ +..++++|.+|..+|+|++|+..|+++|+++|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~----------------- 64 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD----------------- 64 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------
Confidence 5788999999999999999999999997 5678889999999999999999999999998876
Q ss_pred HHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 003249 563 EHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLV 642 (836)
Q Consensus 563 ~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~ 642 (836)
+.+|+++|.++..+|++++|+..|+++++++|+++++++
T Consensus 65 -----------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 103 (150)
T 4ga2_A 65 -----------------------------------------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103 (150)
T ss_dssp -----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------------------------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence 456788899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHH-HHHHhcccchH
Q 003249 643 YEGWILYDTSHCEEGLRKA-EESIQMKRSFE 672 (836)
Q Consensus 643 ~~G~il~~~G~~eeAl~~~-~~Ai~l~p~~~ 672 (836)
++|.++.++|++++|+..| ++|++++|+++
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 9999999999999988875 99999999873
No 102
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.77 E-value=4.3e-17 Score=179.60 Aligned_cols=265 Identities=13% Similarity=-0.017 Sum_probs=193.3
Q ss_pred CChhhHHHHHHHHHhcCCCChH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---h----HHHHHHHHHHHhcC
Q 003249 459 CEGDKRWEDLDKATALDPTLSY-----PYMYRASSLMTKQNVEAALAEINRILGFKLA---L----ECLELRFCFFLALE 526 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~~-----ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~---~----~~~~~rg~~~~~lg 526 (836)
++.++|+..+++|++..|.... ++.++|.++...|++++|+..+.+++++.|. + .++.++|.++..+|
T Consensus 28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G 107 (373)
T 1hz4_A 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 107 (373)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC
Confidence 3346777777777777665532 4666777777777777777777777776552 1 12455677777777
Q ss_pred CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHH
Q 003249 527 DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL 606 (836)
Q Consensus 527 ~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~ 606 (836)
++++|+..|++++++.+.... ...|..+.+
T Consensus 108 ~~~~A~~~~~~al~~~~~~~~--------------------------------------------------~~~~~~~~~ 137 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLINEQHL--------------------------------------------------EQLPMHEFL 137 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC--------------------------------------------------TTSTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcc--------------------------------------------------ccCcHHHHH
Confidence 777777777777765432100 001345677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 003249 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAAS-----DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (836)
Q Consensus 607 ~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~-----~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL 681 (836)
+.++|.++...|++++|++.+++++++.|. ...++.++|.++..+|++++|+..+++++++.+...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--------- 208 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK--------- 208 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC---------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---------
Confidence 889999999999999999999999999876 356899999999999999999999999997643210
Q ss_pred hccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch------hHHhhHHHHHH
Q 003249 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------RAHQGLARVHF 755 (836)
Q Consensus 682 ~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~------~A~~~la~~~~ 755 (836)
.... . .......++.++...|++++|+..+++++++.+. .++.++|.++.
T Consensus 209 --------~~~~---~-------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 209 --------YHSD---W-------------ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp --------CCHH---H-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred --------cchh---H-------------HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 0000 0 0112234556688999999999999999987542 25678999999
Q ss_pred hcCCHHHHHHHHHHHHHhcCCC------HHHHHHHH----HccCHHHHHHHHHHhHhcCCC
Q 003249 756 LKNNKTTAYEEMTKLIKKARNN------ASAYEKRS----EYCDRELTRADLEMVTQLDPL 806 (836)
Q Consensus 756 ~~g~~~~A~~~~~kaie~~p~~------a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~ 806 (836)
..|++++|++.+.+++++.+.. +.++..++ ..|++++|...|.+|+++.+.
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999876532 24555554 458999999999999998774
No 103
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.77 E-value=1.9e-19 Score=171.91 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=88.5
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.+++.+|||+|+|+|++|+|||.||+++|+||++||.+++ ..+|+|+ ++++++|+.+|+|+|||++. ++.+++
T Consensus 20 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~~i~l~--~~~~~~f~~lL~fiYtg~~~-i~~~~v 92 (135)
T 2yy9_A 20 REKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GGSVVLP--AGFAEIFGLLLDFFYTGHLA-LTSGNR 92 (135)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------CCEEEC--GGGHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred HhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CCeEEeC--CCCHHHHHHHHHHHhCCCCC-CCHHHH
Confidence 5678999999999999999999999999999999999987 5689999 59999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003249 256 LEILIFANKFCCERLKDACDRKLASLV 282 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l~~~v 282 (836)
.+|+.+|++|.++.|+..|+..+...+
T Consensus 93 ~~ll~~A~~l~i~~L~~~C~~~l~~~l 119 (135)
T 2yy9_A 93 DQVLLAAKELRVPEAVELCQSFQPQTS 119 (135)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCCC---
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 999999999999999999998765443
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=2.9e-18 Score=161.06 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=107.3
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 003249 470 KATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (836)
Q Consensus 470 kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~ 548 (836)
++..+||+.+.+|.++|.++++.|++++|+..|++||+++|+ +.+++++|.+|..+|++++|+.+|+++|+++|++
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--- 80 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--- 80 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh---
Confidence 456789999999999999999999999999999999999996 6788899999999999999999999999988876
Q ss_pred hhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003249 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (836)
Q Consensus 549 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~ 628 (836)
+.+|+++|.++..+|++++|++.|+
T Consensus 81 -------------------------------------------------------~~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 81 -------------------------------------------------------IKGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp -------------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------------------------------------------hHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3467888889999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHH
Q 003249 629 LARQHAASDHERLVYEGWIL 648 (836)
Q Consensus 629 ~Al~l~P~~~eal~~~G~il 648 (836)
++++++|++++++..+|.++
T Consensus 106 ~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 106 DALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHCcCCHHHHHHHHHhc
Confidence 99999999999998888764
No 105
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.77 E-value=1.1e-17 Score=162.58 Aligned_cols=167 Identities=10% Similarity=0.061 Sum_probs=124.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~ 557 (836)
...|..+|.++...|++++|+..|+++++.+|+ ..++..+|.++...|++++|+..|+++++++|++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------- 76 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV----------- 76 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----------
Confidence 466778888888888888888888888888885 56677788888888888888888888888777653
Q ss_pred HHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003249 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (836)
Q Consensus 558 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~ 637 (836)
.+++.+|.++...|++++|+..++++++.+|++
T Consensus 77 -----------------------------------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 109 (186)
T 3as5_A 77 -----------------------------------------------KVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109 (186)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred -----------------------------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh
Confidence 334555666677777777777777777777777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHH
Q 003249 638 HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNN 717 (836)
Q Consensus 638 ~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~n 717 (836)
+.++..+|.++..+|++++|+..|++++++.|+. +.++.+
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------------------------------------~~~~~~ 149 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE----------------------------------------GKVHRA 149 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc----------------------------------------hHHHHH
Confidence 7777777777777777777777777777655433 346677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCc
Q 003249 718 LGSVYVDCGQLDLAADCYSNALKIRH 743 (836)
Q Consensus 718 lG~~y~~~g~~deAi~~y~kAL~l~~ 743 (836)
+|.+|...|++++|+..|++++++.|
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 77777777777777777777776643
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=6.4e-19 Score=207.29 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcC--CH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN----------VEAALAEINRILGFKLA-LECLELRFCFFLALE--DY 528 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~----------~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg--~~ 528 (836)
++|+..++++|+++|++..+|++||.++..+|+ +++|++.++++|+.+|+ +.+|++|++++..+| ++
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~ 125 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 125 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence 789999999999999999999999999999999 99999999999999996 789999999999999 77
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHH
Q 003249 529 QAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYF 608 (836)
Q Consensus 529 ~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~ 608 (836)
++|+++++++++++|++ ..+|.
T Consensus 126 ~~el~~~~k~l~~d~~N----------------------------------------------------------~~aW~ 147 (567)
T 1dce_A 126 ARELELCARFLEADERN----------------------------------------------------------FHCWD 147 (567)
T ss_dssp HHHHHHHHHHHHHCTTC----------------------------------------------------------HHHHH
T ss_pred HHHHHHHHHHHhhcccc----------------------------------------------------------ccHHH
Confidence 99999888888888776 34677
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcccchHH
Q 003249 609 RQSLLLLRLN-CPEAAMRSLQLARQHAASDHERLVYEGWILYDT--------------SHCEEGLRKAEESIQMKRSFEA 673 (836)
Q Consensus 609 ~~gl~l~~l~-~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~--------------G~~eeAl~~~~~Ai~l~p~~~a 673 (836)
.|+.++.++| .+++|++.+.++++.+|++..+|+++|.++..+ +++++|++.+++||.++|++
T Consensus 148 ~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~-- 225 (567)
T 1dce_A 148 YRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-- 225 (567)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC--
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC--
Confidence 7888888899 899999999999999999999999999999885 67899999999999998877
Q ss_pred HHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHH------------HHHHHHHHHcC
Q 003249 674 FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDL------------AADCYSNALKI 741 (836)
Q Consensus 674 ~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~de------------Ai~~y~kAL~l 741 (836)
..+|+++|.++...+++++ |+.+|++|+++
T Consensus 226 --------------------------------------~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~ 267 (567)
T 1dce_A 226 --------------------------------------QSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTV 267 (567)
T ss_dssp --------------------------------------SHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECT
T ss_pred --------------------------------------ccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceec
Confidence 2578888888888888777 77889999988
Q ss_pred Cch
Q 003249 742 RHT 744 (836)
Q Consensus 742 ~~~ 744 (836)
+|.
T Consensus 268 ~~~ 270 (567)
T 1dce_A 268 GSR 270 (567)
T ss_dssp TBT
T ss_pred ccc
Confidence 754
No 107
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.76 E-value=4.9e-20 Score=173.31 Aligned_cols=98 Identities=18% Similarity=0.286 Sum_probs=87.6
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.+++.+|||+|+|+|++|+|||.||+++|+||++||.++|.|+ .+|++++ ++++++|+.+|+|+|||++. ++.+++
T Consensus 24 ~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~--~~i~l~~-~v~~~~f~~lL~~iYtg~~~-i~~~~v 99 (124)
T 2ihc_A 24 RKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE--LNITLPE-EVTVKGFEPLIQFAYTAKLI-LSKENV 99 (124)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C--EEEECCT-TSCHHHHHHHHHHHHHSEEE-EETTTH
T ss_pred HhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC--ceEeecC-CcCHHHHHHHHHHhcCCCcc-cCHHHH
Confidence 4577899999999999999999999999999999999999775 5788853 79999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 003249 256 LEILIFANKFCCERLKDACDRK 277 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~ 277 (836)
.+|+.+|+++.++.|+..|+..
T Consensus 100 ~~ll~~A~~~~~~~L~~~C~~~ 121 (124)
T 2ihc_A 100 DEVCKCVEFLSVHNIEESCFQF 121 (124)
T ss_dssp HHHHHHHHHHTBSSCCGGGGGT
T ss_pred HHHHHHHHHHCCHHHHHHHHHH
Confidence 9999999999999998888654
No 108
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.76 E-value=2.6e-17 Score=182.58 Aligned_cols=243 Identities=11% Similarity=0.039 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh-hhh
Q 003249 480 YPYMYRASSLMTKQNVEAALAEINRILGFKL---A----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF-EGR 551 (836)
Q Consensus 480 ~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P---~----~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~-~~~ 551 (836)
..|+.+|..+...|++++|+..|.+|+++-+ + ..+++++|.+|..+|++++|+..|++|+++.|....+ ...
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3678899999999999999999999998743 2 2467789999999999999999999999998765431 122
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003249 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESD------APKGVLYFRQSLLLLRLNCPEAAMR 625 (836)
Q Consensus 552 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~------P~~~~~~~~~gl~l~~l~~~~eAl~ 625 (836)
......++.++...++++.| +..+.+++++. +..+.+++++|.++..+|++++|++
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~ 243 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKA------------------LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE 243 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHH------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHH------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 33344566667777777777 44555555542 2345788999999999999999999
Q ss_pred HHHHHHH-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHH
Q 003249 626 SLQLARQ-----HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLED 700 (836)
Q Consensus 626 ~~~~Al~-----l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~ 700 (836)
.|+++++ .+|..+.+++++|.++..+|++++|+..|++++++.+...
T Consensus 244 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------- 295 (378)
T 3q15_A 244 HFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS---------------------------- 295 (378)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC----------------------------
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----------------------------
Confidence 9999999 8888899999999999999999999999999998754320
Q ss_pred HhcCCccccchHHHHHHHHHHHHhcCC---HHHHHHHHHHHHcCC-chhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 003249 701 ALKCPSDRLRKGQALNNLGSVYVDCGQ---LDLAADCYSNALKIR-HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKAR 775 (836)
Q Consensus 701 Al~~~~~~~~~~~a~~nlG~~y~~~g~---~deAi~~y~kAL~l~-~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p 775 (836)
.......+..++.+|...|+ +++|+..+++.-... ...++..+|.+|..+|++++|+..|.+++++..
T Consensus 296 -------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 296 -------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367 (378)
T ss_dssp -------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 01112356788999999999 889988888732221 135778999999999999999999999997653
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.76 E-value=1.9e-17 Score=170.40 Aligned_cols=205 Identities=9% Similarity=0.001 Sum_probs=129.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~----~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~ 553 (836)
.+..++++|..+...|++++|+..|+++++..|+. .+++.+|.+|..+|++++|+..|+++++++|++...
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~----- 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----- 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH-----
Confidence 46789999999999999999999999999999952 578899999999999999999999999999998531
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003249 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (836)
Q Consensus 554 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l 633 (836)
..+++.+|.++..++.
T Consensus 78 --------------------------------------------------~~a~~~~g~~~~~~~~-------------- 93 (225)
T 2yhc_A 78 --------------------------------------------------DYVMYMRGLTNMALDD-------------- 93 (225)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHC--------------
T ss_pred --------------------------------------------------HHHHHHHHHHHHhhhh--------------
Confidence 1223333333332221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH-HHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchH
Q 003249 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712 (836)
Q Consensus 634 ~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~-a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~ 712 (836)
.....+..++.++.++|++++|+..|+++|+..|+.. +...+.. +.... . ..+
T Consensus 94 --~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~-l~~~~----------~-------------~~~ 147 (225)
T 2yhc_A 94 --SALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKR-LVFLK----------D-------------RLA 147 (225)
T ss_dssp ----------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH-HHHHH----------H-------------HHH
T ss_pred --hhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHH-HHHHH----------H-------------HHH
Confidence 1112233444455555555555555555555555442 1111000 00000 0 002
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-----hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRHT-----RAHQGLARVHFLKNNKTTAYEEMTKLIKKARNN 777 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-----~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~ 777 (836)
.....+|.+|...|++++|+..|+++++..|. .++..+|.++..+|++++|++.+.++++..|++
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 34456777777777777777777777776443 467777777777777777777777777766664
No 110
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.75 E-value=2.5e-19 Score=168.59 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=89.7
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.+++.+|||+|+|+|++|+|||.||+++|+||++||.+++.| ..+|.+++ ++++++|+.+++|+|||++. ++.+++
T Consensus 27 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~~i~l~~-~~~~~~f~~~l~~iYtg~~~-~~~~~v 102 (125)
T 3ohu_A 27 RKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DLVVSLPE-EVTARGFGPLLQFAYTAKLL-LSRENI 102 (125)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SCEEECCT-TCCHHHHHHHHHHHTTSEEE-ECTTTH
T ss_pred HhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--CcEEEeCC-CCCHHHHHHHHHhHcCCceE-ECHHHH
Confidence 567899999999999999999999999999999999999977 67899984 49999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 003249 256 LEILIFANKFCCERLKDACDR 276 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~ 276 (836)
.+|+.+|+++.++.|++.|+.
T Consensus 103 ~~ll~~A~~l~i~~L~~~C~~ 123 (125)
T 3ohu_A 103 REVIRCAEFLRMHNLEDSCFS 123 (125)
T ss_dssp HHHHHHHHHHTBSSCTTSSCC
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999888877753
No 111
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.75 E-value=6.7e-19 Score=164.27 Aligned_cols=95 Identities=18% Similarity=0.268 Sum_probs=88.3
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
.+++.+|||+|+|+|++|+|||.||+++|+||++||+++ ..+|+++ ++++++|+.+++|+|||++. ++.+++
T Consensus 22 ~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~~~i~l~--~~~~~~f~~ll~~~Ytg~~~-i~~~~~ 93 (119)
T 2q81_A 22 RQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----KDVVHLD--ISNAAGLGQVLEFMYTAKLS-LSPENV 93 (119)
T ss_dssp HHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----CSGGGGG--GCCHHHHHHHHHHHHHSCCC-CCTTTH
T ss_pred HhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHHHcCCCCc-cCHHHH
Confidence 457889999999999999999999999999999999973 4678888 69999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 003249 256 LEILIFANKFCCERLKDACDRKL 278 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l 278 (836)
.+|+.+|+++.++.|++.|+..+
T Consensus 94 ~~ll~~A~~l~i~~L~~~C~~~l 116 (119)
T 2q81_A 94 DDVLAVATFLQMQDIITACHALK 116 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999998765
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.75 E-value=5.4e-18 Score=183.30 Aligned_cols=234 Identities=12% Similarity=0.066 Sum_probs=176.9
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMT-KQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~-~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|...+.+|.+..|.. ++. .+++++|+..|+++ |.+|..+|++++|+..|.++++
T Consensus 8 ~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al~ 64 (307)
T 2ifu_A 8 SEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAYLQEAE 64 (307)
T ss_dssp HHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHH
Confidence 67777888888877752 112 58899999988876 5678899999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~ 620 (836)
+.|.... . +.-+.+|.+.|.++..+|++
T Consensus 65 ~~~~~~~--------------------~--------------------------------~~~a~~~~~lg~~~~~~g~~ 92 (307)
T 2ifu_A 65 AHANNRS--------------------L--------------------------------FHAAKAFEQAGMMLKDLQRM 92 (307)
T ss_dssp HHHHTTC--------------------H--------------------------------HHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHcCC--------------------H--------------------------------HHHHHHHHHHHHHHHhCCCH
Confidence 8654311 0 00135677888999999999
Q ss_pred HHHHHHHHHHHHcCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHH
Q 003249 621 EAAMRSLQLARQHAAS------DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTV 694 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~------~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~ 694 (836)
++|+..|++|+++.+. .+.++.++|.++.. |++++|+..|++|+++.|...
T Consensus 93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~---------------------- 149 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE---------------------- 149 (307)
T ss_dssp GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC----------------------
Confidence 9999999999988543 25689999999999 999999999999998765431
Q ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--------hhHHhhHHHHHHhcCCHHHHHHH
Q 003249 695 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--------TRAHQGLARVHFLKNNKTTAYEE 766 (836)
Q Consensus 695 i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--------~~A~~~la~~~~~~g~~~~A~~~ 766 (836)
+....+.+++++|.+|..+|++++|+.+|++|+++.+ ..++.++|.++..+|++++|+..
T Consensus 150 ------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 150 ------------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0001246899999999999999999999999999732 24778899999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHH-----H---HccCHHHH--HHHHHHhHhcCCC
Q 003249 767 MTKLIKKARNNASAYEKR-----S---EYCDRELT--RADLEMVTQLDPL 806 (836)
Q Consensus 767 ~~kaie~~p~~a~Ay~~r-----~---~~~~~~~A--~~D~~~Ai~l~P~ 806 (836)
|.+++ ++|++..+...+ . ..|+.+.+ +..|..+..+||.
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~~~~~~~~~~ld~~ 266 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRSPLVTYMDND 266 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHHHTTCHHHHHHHTTSHHHHTSCHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHhCchhhhhhHH
Confidence 99999 999876543322 1 22443222 2335666777764
No 113
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.75 E-value=2.4e-17 Score=160.33 Aligned_cols=170 Identities=14% Similarity=0.063 Sum_probs=156.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL 681 (836)
..+..++.+|.++...|++++|+..++++++.+|+++.+++.+|.++..+|++++|+..+++++++.|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 75 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN---------- 75 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----------
Confidence 3467889999999999999999999999999999999999999999999999999999999999876654
Q ss_pred hccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCC
Q 003249 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNN 759 (836)
Q Consensus 682 ~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~ 759 (836)
..++.++|.+|...|++++|+..|++++++.| ..++..+|.++...|+
T Consensus 76 ------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 76 ------------------------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125 (186)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc
Confidence 35789999999999999999999999999865 4688999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcccc
Q 003249 760 KTTAYEEMTKLIKKARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVYPY 811 (836)
Q Consensus 760 ~~~A~~~~~kaie~~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~~y 811 (836)
+++|+..++++++++|+++.+|..++ ..|++++|+..++++++++|+...++
T Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 126 FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence 99999999999999999999999885 45899999999999999999987654
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=7.3e-18 Score=158.27 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=76.1
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHH
Q 003249 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFL 676 (836)
Q Consensus 597 l~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~ 676 (836)
..+||+.+.+|.++|..+.+.|++++|+..|++|++++|+++.+|+++|.++..+|++++|+.+|++||+++|++
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----- 80 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF----- 80 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-----
Confidence 346677777777777777777777777777777777777777777777777777777777777777777666554
Q ss_pred HHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHH
Q 003249 677 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLAR 752 (836)
Q Consensus 677 ~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~ 752 (836)
+.+|+++|.+|..+|++++|+.+|++||+++|. .++.+++.
T Consensus 81 -----------------------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 81 -----------------------------------IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -----------------------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 345666666666666666666666666666543 34444443
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.74 E-value=3.9e-17 Score=179.28 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=130.5
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCchhhh
Q 003249 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALE-DYQAALCDVQAILTLSPDYRMFE 549 (836)
Q Consensus 472 i~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg-~~~~Ai~d~~~al~l~P~~~~~~ 549 (836)
|...|++..++.++..++...+..++|+..++++|+++|+ ..+|+.|+.++..+| ++++++..++++|..+|++
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn---- 122 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS---- 122 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC----
T ss_pred eeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc----
Confidence 4456677788888999999999999999999999999997 688999999999999 5999988888888877766
Q ss_pred hhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-CHHHHHHHH
Q 003249 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRL-N-CPEAAMRSL 627 (836)
Q Consensus 550 ~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l-~-~~~eAl~~~ 627 (836)
..+|+.|+.++..+ + +++++++.+
T Consensus 123 ------------------------------------------------------y~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 123 ------------------------------------------------------YQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp ------------------------------------------------------HHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 45677778888877 7 899999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcccch-HHHHHHHHHh
Q 003249 628 QLARQHAASDHERLVYEGWILYDTSHCE--------EGLRKAEESIQMKRSF-EAFFLKAYAL 681 (836)
Q Consensus 628 ~~Al~l~P~~~eal~~~G~il~~~G~~e--------eAl~~~~~Ai~l~p~~-~a~~~~a~aL 681 (836)
.++++.+|.+..+|.+||+++..+|+++ ++++.++++|+++|++ .|++.+++.+
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999998 9999999999999876 3444444443
No 116
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.73 E-value=2.9e-17 Score=170.96 Aligned_cols=233 Identities=11% Similarity=0.008 Sum_probs=170.2
Q ss_pred HhcCCHHHHHHHHHHHHhc-------C-CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHH
Q 003249 490 MTKQNVEAALAEINRILGF-------K-LA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHML 560 (836)
Q Consensus 490 ~~~g~~~eAi~~~~kai~l-------~-P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~ 560 (836)
...|++++|+..|++|+++ + |. ..++..+|.++..+|++++|+..|++++++.....
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------- 77 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-------------- 77 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc--------------
Confidence 3567788888888888874 3 33 46788899999999999999999999998731000
Q ss_pred HHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Q 003249 561 VREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH------- 633 (836)
Q Consensus 561 l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l------- 633 (836)
-..+|..+.++.++|.++..+|++++|++.|++++++
T Consensus 78 ------------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 78 ------------------------------------GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp ------------------------------------CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred ------------------------------------CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 0112334567889999999999999999999999998
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchH
Q 003249 634 -AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKG 712 (836)
Q Consensus 634 -~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~ 712 (836)
+|....++.++|.++..+|++++|+..|++++++.... . .++.+...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------------~------------------~~~~~~~~ 169 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR--------------L------------------GPDDPNVA 169 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--------------S------------------CTTCHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--------------c------------------CCCCHHHH
Confidence 58889999999999999999999999999999762100 0 01122235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc-----------hhHHhhHHHHHHhcCCHHHH------HHHHHHHHHhcC
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALKIRH-----------TRAHQGLARVHFLKNNKTTA------YEEMTKLIKKAR 775 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~-----------~~A~~~la~~~~~~g~~~~A------~~~~~kaie~~p 775 (836)
.++.++|.+|..+|++++|+..|++++++.+ ...+..++..+...+....+ ...+.+.....|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 7899999999999999999999999998621 13455555555555443332 222222223346
Q ss_pred CCHHHHHHHH----HccCHHHHHHHHHHhHhcC
Q 003249 776 NNASAYEKRS----EYCDRELTRADLEMVTQLD 804 (836)
Q Consensus 776 ~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~ 804 (836)
..+.+|..++ ..|++++|+..|++|+++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 6677787775 3488999999999998764
No 117
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.73 E-value=5.6e-18 Score=157.31 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=83.2
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
..++.+|||+|+|+|+.|+|||.||+++|+||++||.++ ..+|+++ ++++++|+.+++|+|||++..++.+++
T Consensus 26 ~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~~i~l~--~~~~~~f~~~l~~~Ytg~~~~~~~~~~ 98 (116)
T 3fkc_A 26 RGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQVVELS--FIRAEIFAEILNYIYSSKIVRVRSDLL 98 (116)
T ss_dssp HHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CSEEEEC--SSCHHHHHHHHHHHTTSCCCSCCHHHH
T ss_pred HhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CCEEEeC--CCCHHHHHHHHHhhcCCCcCCCCHHHH
Confidence 457889999999999999999999999999999999986 5689998 699999999999999999933999999
Q ss_pred HHHHHHHHHHhHHHHHH
Q 003249 256 LEILIFANKFCCERLKD 272 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~ 272 (836)
.+++.+|+++.++.|++
T Consensus 99 ~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 99 DELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHhCccccCc
Confidence 99999999999988864
No 118
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.73 E-value=6.5e-19 Score=166.71 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=85.9
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
..++.+|||+|+|+|++|+|||.||+++|+||++||.++ ...+|+|++ ++++++|+.+++|+|||++. ++.+++
T Consensus 28 ~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~~i~l~~-~~~~~~f~~ll~~iYtg~~~-i~~~~~ 101 (129)
T 3ga1_A 28 RLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSAVVELPA-AVQPQSFQQILSFCYTGRLS-MNVGDQ 101 (129)
T ss_dssp HHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCSEEECCT-TCCHHHHHHHHHHHHHSEEE-CCTTTH
T ss_pred HhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCCEEEECC-CCCHHHHHHHHHHHhCCccc-cCHHHH
Confidence 457889999999999999999999999999999999987 567899963 69999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 003249 256 LEILIFANKFCCERLKDACDRKLA 279 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l~ 279 (836)
.+|+.+|+++.++.|++.|+..+.
T Consensus 102 ~~ll~~A~~~~i~~l~~~C~~~L~ 125 (129)
T 3ga1_A 102 DLLMYTAGFLQIQEIMEKGTEFFL 125 (129)
T ss_dssp HHHHHHHHHTTBTTSSCC------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999988888888887654
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.73 E-value=5.5e-17 Score=174.02 Aligned_cols=170 Identities=18% Similarity=0.094 Sum_probs=138.2
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 003249 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (836)
Q Consensus 475 dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~ 553 (836)
-|++..++..+|..+...|++++|+..|+++++++|+ +++++++|.++..+|++++|+..|+++++++|+....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~----- 187 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ----- 187 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH-----
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH-----
Confidence 4999999999999999999999999999999999997 6889999999999999999999999999999965321
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003249 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (836)
Q Consensus 554 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l 633 (836)
+...+..+.+.++.++|++.|+++++.
T Consensus 188 -----------------------------------------------------~~~~~~~l~~~~~~~~a~~~l~~al~~ 214 (287)
T 3qou_A 188 -----------------------------------------------------GLVAQIELLXQAADTPEIQQLQQQVAE 214 (287)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHhhcccCccHHHHHHHHhc
Confidence 222333445556667778888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHH
Q 003249 634 AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQ 713 (836)
Q Consensus 634 ~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~ 713 (836)
+|+++++++++|.++..+|++++|++.|+++++++|++. .+.
T Consensus 215 ~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~--------------------------------------~~~ 256 (287)
T 3qou_A 215 NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA--------------------------------------DGQ 256 (287)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG--------------------------------------GGH
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc--------------------------------------cch
Confidence 888888888888888888888888888888887777651 135
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
++.++|.+|..+|+.++|+..|+++|.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 777888888888888888888887764
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=1.5e-16 Score=163.64 Aligned_cols=169 Identities=9% Similarity=0.009 Sum_probs=136.4
Q ss_pred hhHHHHHHHHHhcCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHh----------
Q 003249 462 DKRWEDLDKATALDPTLS---YPYMYRASSLMTKQNVEAALAEINRILGFKLAL----ECLELRFCFFLA---------- 524 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~---~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~----~~~~~rg~~~~~---------- 524 (836)
++|+..|+++++.+|+++ .+++.+|.++..+|++++|+..|+++++.+|+. .+++.+|.++..
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~ 100 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFF 100 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 455555777788777764 689999999999999999999999999999963 378888988875
Q ss_pred --------cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHH
Q 003249 525 --------LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQM 596 (836)
Q Consensus 525 --------lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~a 596 (836)
+|++++|+..|+++++.+|+...+..-... +..+..
T Consensus 101 ~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~-----------------------------------l~~~~~- 144 (225)
T 2yhc_A 101 GVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKR-----------------------------------LVFLKD- 144 (225)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH-----------------------------------HHHHHH-
T ss_pred ccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHH-----------------------------------HHHHHH-
Confidence 689999999999999999998653211000 000000
Q ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 597 LESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH---ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 597 l~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~---eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.....++.+|.++.+.|++++|+..|+++++..|+++ ++++.+|.++.++|++++|++.+++++...|+.
T Consensus 145 -----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 145 -----RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -----HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 0123456789999999999999999999999999987 789999999999999999999999999877765
No 121
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.72 E-value=2.7e-18 Score=160.17 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=84.8
Q ss_pred CCCCccccEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHHHH
Q 003249 176 SGDQVLRNVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPNLL 255 (836)
Q Consensus 176 ~~~~~~~DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~~v 255 (836)
..++.+|||+|+|+|++|+|||.|||++|+||++ ...+|+|+ ++++++|+.+|+|+|||++. ++.++|
T Consensus 25 r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~~i~l~--~v~~~~f~~ll~fiYtg~~~-i~~~~v 92 (119)
T 3m5b_A 25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQWALGE--GISPSTFAQLLNFVYGESVE-LQPGEL 92 (119)
T ss_dssp HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEEEECCS--SCCHHHHHHHHHHHTTCCEE-ECGGGH
T ss_pred HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCCEEEeC--CCCHHHHHHHHHHHcCCCcC-cCHHHH
Confidence 5578999999999999999999999999999985 34678998 69999999999999999999 999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 003249 256 LEILIFANKFCCERLKDACDRKL 278 (836)
Q Consensus 256 ~~lL~aA~~~c~~~L~~~c~~~l 278 (836)
.+|+.+|+++.++.|++.|+..+
T Consensus 93 ~~ll~aA~~l~i~~l~~~C~~~~ 115 (119)
T 3m5b_A 93 RPLQEAARALGVQSLEEACWRAR 115 (119)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999998864
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.72 E-value=8.4e-17 Score=173.94 Aligned_cols=206 Identities=12% Similarity=0.012 Sum_probs=166.6
Q ss_pred hccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHHHHHHHHhc
Q 003249 395 LRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATAL 474 (836)
Q Consensus 395 ~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d~~kAi~l 474 (836)
..|++++|.+.+++|.+..+.. + +...|+++.|...|+++ +.+|...|.+ ++|+..|.+|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~-~------~~~~~~~~~A~~~~~~a-------~~~~~~~g~~---~~A~~~~~~al~~ 65 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS-F------MKWKPDYDSAASEYAKA-------AVAFKNAKQL---EQAKDAYLQEAEA 65 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC-S------SSCSCCHHHHHHHHHHH-------HHHHHHTTCH---HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc-c------cCCCCCHHHHHHHHHHH-------HHHHHHcCCH---HHHHHHHHHHHHH
Confidence 4578889999998887753321 1 11157888888888876 4456665555 8999999999998
Q ss_pred CCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003249 475 DPTL------SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-------LECLELRFCFFLALEDYQAALCDVQAILTL 541 (836)
Q Consensus 475 dP~~------~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-------~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l 541 (836)
.|.. +.+|.++|.++..+|++++|+..|++|+++.+. ..++.++|.+|.. |++++|+..|++|+++
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 7754 568999999999999999999999999998542 2457789999999 9999999999999998
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003249 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (836)
Q Consensus 542 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~ 621 (836)
.|+.... +..+.++.++|.++.++|+++
T Consensus 145 ~~~~~~~----------------------------------------------------~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 145 FENEERL----------------------------------------------------RQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp HHHTTCH----------------------------------------------------HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhCCCh----------------------------------------------------hHHHHHHHHHHHHHHHcCCHH
Confidence 7643110 001356788999999999999
Q ss_pred HHHHHHHHHHHcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 622 AAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 622 eAl~~~~~Al~l~P~~------~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+|+..|++++++.|++ ..++.++|.++..+|++++|+..|++++ ++|++
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 9999999999987765 4588999999999999999999999999 99876
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.72 E-value=3.9e-19 Score=195.46 Aligned_cols=195 Identities=14% Similarity=0.108 Sum_probs=161.9
Q ss_pred hhHHHHHHH----HHhcCCCChHHHHHHHHHHH------------hcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHh
Q 003249 462 DKRWEDLDK----ATALDPTLSYPYMYRASSLM------------TKQNVEAALAEINRILGFKLA-LECLELRFCFFLA 524 (836)
Q Consensus 462 ~eAi~d~~k----Ai~ldP~~~~ay~~rg~~l~------------~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~ 524 (836)
++|+..+++ ++.++|++ +|..+|.... .++++++|+..|+++++.+|+ ..++.++|.++..
T Consensus 82 e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~ 159 (336)
T 1p5q_A 82 ERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK 159 (336)
T ss_dssp HHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 556666666 67777776 5666665543 678888999999999999996 5778889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCH
Q 003249 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (836)
Q Consensus 525 lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~ 604 (836)
+|+|++|+..|++|++++|++..... .+..+.+|..+
T Consensus 160 ~g~~~~A~~~y~~Al~~~p~~~~~~~-------------------------------------------~~~~~~~~~~~ 196 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVSWLEYESSFSN-------------------------------------------EEAQKAQALRL 196 (336)
T ss_dssp HTCHHHHHHHHHHHHHHTTTCCCCCS-------------------------------------------HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhccccCCh-------------------------------------------HHHHHHHHHHH
Confidence 99999999999999999998743110 01122334456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhcc
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 684 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~ 684 (836)
.+|+++|.++.++|++++|+..|++|++++|+++.+|+++|.++..+|++++|+..|++|++++|++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~------------- 263 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN------------- 263 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-------------
Confidence 8899999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHH-HHHHHHHHcC
Q 003249 685 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLA-ADCYSNALKI 741 (836)
Q Consensus 685 ~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deA-i~~y~kAL~l 741 (836)
..++.++|.++..+|++++| ...|.+.+..
T Consensus 264 ---------------------------~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 264 ---------------------------KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999 5678887754
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.72 E-value=3.6e-17 Score=161.57 Aligned_cols=168 Identities=12% Similarity=-0.012 Sum_probs=140.9
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 003249 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (836)
Q Consensus 475 dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~ 553 (836)
||.....++.+|.++...|++++|+..|+++++++|+ ..+++++|.++..+|++++|+..|+++++++| ++.++...+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 4666678899999999999999999999999999997 68899999999999999999999999999999 654332211
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003249 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (836)
Q Consensus 554 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l 633 (836)
. +.. .+.. ...+++..+.++++.+|+++.+++++|.++...|++++|+..|++++++
T Consensus 81 ~------~~~-~~~~----------------~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 81 K------LEL-HQQA----------------AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp H------HHH-HHHH----------------TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred H------HHH-Hhhc----------------ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 1 000 0000 1113578899999999999999999999999999999999999999999
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 634 AASD--HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 634 ~P~~--~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
+|+. +.++.++|.++..+|+.++|+..|+++|.
T Consensus 138 ~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9986 66999999999999999999999999984
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.71 E-value=2.7e-17 Score=159.98 Aligned_cols=117 Identities=5% Similarity=-0.057 Sum_probs=108.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+.++++++|+++.+++++|.++.+.|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++|++++|++
T Consensus 24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~ 103 (151)
T 3gyz_A 24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND 103 (151)
T ss_dssp CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHh
Q 003249 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQ 748 (836)
Q Consensus 672 ~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~ 748 (836)
+.+|+++|.+|..+|++++|+.+|++|+++.|.....
T Consensus 104 ----------------------------------------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~ 140 (151)
T 3gyz_A 104 ----------------------------------------YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLK 140 (151)
T ss_dssp ----------------------------------------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred ----------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHH
Confidence 4689999999999999999999999999998765433
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=3.6e-17 Score=192.34 Aligned_cols=180 Identities=9% Similarity=0.001 Sum_probs=161.5
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CHH
Q 003249 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNC----------PEAAMRSLQLARQHAASDHERLVYEGWILYDTS--HCE 655 (836)
Q Consensus 588 ~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~----------~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G--~~e 655 (836)
+++..++++|+++|++..+|+.|+.++..+++ +++|++.++++++.+|++..+|+.|||++..+| +++
T Consensus 47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~ 126 (567)
T 1dce_A 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWA 126 (567)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHH
Confidence 46899999999999999999999999999999 999999999999999999999999999999999 779
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcC-CHHHHHHH
Q 003249 656 EGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG-QLDLAADC 734 (836)
Q Consensus 656 eAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g-~~deAi~~ 734 (836)
+|++.++++|+++|.+ ..||+++|.++...| .+++|+++
T Consensus 127 ~el~~~~k~l~~d~~N----------------------------------------~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 127 RELELCARFLEADERN----------------------------------------FHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHCTTC----------------------------------------HHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcccc----------------------------------------ccHHHHHHHHHHHcCCChHHHHHH
Confidence 9999999999998776 358999999999999 99999999
Q ss_pred HHHHHcCCch--hHHhhHHHHHHhc--------------CCHHHHHHHHHHHHHhcCCCHHHHHHHHH----ccCHHH--
Q 003249 735 YSNALKIRHT--RAHQGLARVHFLK--------------NNKTTAYEEMTKLIKKARNNASAYEKRSE----YCDREL-- 792 (836)
Q Consensus 735 y~kAL~l~~~--~A~~~la~~~~~~--------------g~~~~A~~~~~kaie~~p~~a~Ay~~r~~----~~~~~~-- 792 (836)
++++|+++|. .|+.+++.++... +.+++|++.+.+||+++|++.+||+.++- .+++++
T Consensus 167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~ 246 (567)
T 1dce_A 167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLC 246 (567)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEE
T ss_pred HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcccee
Confidence 9999998764 7899999988874 56899999999999999999999887642 244444
Q ss_pred ----------HHHHHHHhHhcCCCC
Q 003249 793 ----------TRADLEMVTQLDPLR 807 (836)
Q Consensus 793 ----------A~~D~~~Ai~l~P~~ 807 (836)
|+..|++|++++|..
T Consensus 247 ~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 247 CVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp EEEEETTTTEEEEEEEEEECTTBTT
T ss_pred eeeeccCCceEEEEeccceeccccc
Confidence 677899999999985
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.70 E-value=5.1e-18 Score=186.52 Aligned_cols=201 Identities=13% Similarity=0.016 Sum_probs=162.0
Q ss_pred HHHHhhccchHHHHHHHHH----HHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHH
Q 003249 390 GCVRLLRKEYDEAEHLFEA----AVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRW 465 (836)
Q Consensus 390 G~~~~~~g~y~eAi~~f~~----Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi 465 (836)
|.++...+.+++|+..+++ ++.++|.+++..+|.... .+.++....|. -.+...++|+
T Consensus 72 g~~~~~~~~~e~al~~~~~Ge~~~l~i~p~~ayg~~g~~~~----------------~i~~~~~l~f~--~~L~~~~~A~ 133 (336)
T 1p5q_A 72 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF----------------QIPPNAELKYE--LHLKSFEKAK 133 (336)
T ss_dssp GGGGTCCHHHHHHHTTCCTTCEEEEEECTTTTTTTTCBGGG----------------TBCSSCCEEEE--EEEEEEECCC
T ss_pred CCccccchHHHHHHhcCCCCCeEEEEECCccccCcCCCCcc----------------CCCCCCeEEEE--EEEeeccccc
Confidence 3444456678888888887 777777766554432221 01111000000 0112336788
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----------------HHHHHHHHHHHhcCCHH
Q 003249 466 EDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----------------ECLELRFCFFLALEDYQ 529 (836)
Q Consensus 466 ~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~----------------~~~~~rg~~~~~lg~~~ 529 (836)
..|+++++++|+++.+|.++|.++..+|++++|+..|++|++++|+. .++.++|.+|..+|+++
T Consensus 134 ~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~ 213 (336)
T 1p5q_A 134 ESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 213 (336)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 88999999999999999999999999999999999999999999975 78889999999999999
Q ss_pred HHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHH
Q 003249 530 AALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFR 609 (836)
Q Consensus 530 ~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~ 609 (836)
+|+.+|+++|+++|++ +.+|++
T Consensus 214 ~A~~~~~~al~~~p~~----------------------------------------------------------~~a~~~ 235 (336)
T 1p5q_A 214 AAIESCNKALELDSNN----------------------------------------------------------EKGLSR 235 (336)
T ss_dssp HHHHHHHHHHHHCTTC----------------------------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHhCCCc----------------------------------------------------------HHHHHH
Confidence 9999999999998876 346788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 003249 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEG-LRKAEESIQ 666 (836)
Q Consensus 610 ~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeA-l~~~~~Ai~ 666 (836)
+|.++..+|++++|+..|++|++++|+++.++.++|.++..+|++++| ...|++.+.
T Consensus 236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999 557777764
No 128
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=2.3e-17 Score=185.23 Aligned_cols=330 Identities=16% Similarity=0.053 Sum_probs=146.4
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhc-----
Q 003249 370 ERLLESAETDRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS----- 444 (836)
Q Consensus 370 e~a~~ca~~~~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~----- 444 (836)
+++..+.... ..+..+.++|.++.+.|++++|+++|.++ +....+..++......|++++|+..+..+++.
T Consensus 20 d~A~~fae~~-~~~~vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~ 95 (449)
T 1b89_A 20 DRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY 95 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC-CChHHHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccch
Confidence 3444443332 33468889999999999999999999765 33447788888888899999999988877743
Q ss_pred -cCCchHHHHHhhhcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 003249 445 -VTPLGWMYQERSLYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFL 523 (836)
Q Consensus 445 -~~~~~~ay~~r~~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~ 523 (836)
.+.++.+|...|.+ +++...++ .|+. .+|.+.|..+.+.|++++|+..|+++ ..|..+|.++.
T Consensus 96 i~~~Li~~Y~Klg~l---~e~e~f~~-----~pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~ 159 (449)
T 1b89_A 96 VETELIFALAKTNRL---AELEEFIN-----GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLV 159 (449)
T ss_dssp -------------CH---HHHTTTTT-----CC-----------------CTTTHHHHHHHT-------TCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCH---HHHHHHHc-----CCcH-HHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHH
Confidence 44556666666554 44444442 2543 58999999999999999999999987 34666788999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCC
Q 003249 524 ALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPK 603 (836)
Q Consensus 524 ~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~ 603 (836)
.+|+|++|++.|+++ +.+
T Consensus 160 ~Lg~yq~AVea~~KA-----~~~--------------------------------------------------------- 177 (449)
T 1b89_A 160 HLGEYQAAVDGARKA-----NST--------------------------------------------------------- 177 (449)
T ss_dssp TTTCHHHHHHHHHHH-----TCH---------------------------------------------------------
T ss_pred HhccHHHHHHHHHHc-----CCc---------------------------------------------------------
Confidence 999999999999888 121
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch-HHHHHHHHHhh
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF-EAFFLKAYALA 682 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~-~a~~~~a~aL~ 682 (836)
..|...+.++...|+++.|..+... +...|++ +..+...|.+.|++++|+..+++++.++|.. ..|...++.++
T Consensus 178 -~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 178 -RTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 252 (449)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 2233334455667777777666654 3344443 3346667777888888888888888777665 34444555444
Q ss_pred ccccCCCChhHHHHHHHHHhcCCcc--ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhHHHHHHhcCCH
Q 003249 683 DSSQDSSCSSTVVSLLEDALKCPSD--RLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGLARVHFLKNNK 760 (836)
Q Consensus 683 ~~~l~~~~~~~~i~~l~~Al~~~~~--~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~~g~~ 760 (836)
+ ..|+.....++.+...+.+++- .-..+..|..+..+|..-++||.|+....+.....-..
T Consensus 253 k--y~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~--------------- 315 (449)
T 1b89_A 253 K--FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE--------------- 315 (449)
T ss_dssp T--TCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCH---------------
T ss_pred h--cCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhh---------------
Confidence 3 2344444445555444443330 00124578888888888888888887766654331000
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHH--ccCHHHHHHHHHHhH--hcCCCCc
Q 003249 761 TTAYEEMTKLIKKARNNASAYEKRSE--YCDRELTRADLEMVT--QLDPLRV 808 (836)
Q Consensus 761 ~~A~~~~~kaie~~p~~a~Ay~~r~~--~~~~~~A~~D~~~Ai--~l~P~~~ 808 (836)
..| |-|-..+.|++.|++-.. ++..-+++.|+-+++ ++||+++
T Consensus 316 ----~~f-~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~ 362 (449)
T 1b89_A 316 ----GQF-KDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRA 362 (449)
T ss_dssp ----HHH-HHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHH
T ss_pred ----HHH-HHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHH
Confidence 122 223346788899988754 355678899999999 9999765
No 129
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.69 E-value=3.3e-16 Score=183.68 Aligned_cols=159 Identities=13% Similarity=-0.005 Sum_probs=131.4
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAI 538 (836)
Q Consensus 460 ~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~a 538 (836)
+.++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|+ ..++.++|.+|..+|++++|+..|+++
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3488999999999999999999999999999999999999999999999997 678899999999999999999999999
Q ss_pred HhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 003249 539 LTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN 618 (836)
Q Consensus 539 l~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~ 618 (836)
++++|++ +.+|+++|.++.++|
T Consensus 84 l~~~p~~----------------------------------------------------------~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 84 SDAAPEH----------------------------------------------------------PGIALWLGHALEDAG 105 (568)
T ss_dssp HHHCTTC----------------------------------------------------------HHHHHHHHHHHHHTT
T ss_pred HhcCCCC----------------------------------------------------------HHHHHHHHHHHHHcC
Confidence 9998876 345677888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcccch-HHHHH
Q 003249 619 CPEAAMRSLQLARQHAASDHERLVYEGWILYDT---SHCEEGLRKAEESIQMKRSF-EAFFL 676 (836)
Q Consensus 619 ~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~---G~~eeAl~~~~~Ai~l~p~~-~a~~~ 676 (836)
++++|++.|+++++++|++++++.++|.++..+ |++++|++.|+++++++|+. .+++.
T Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 167 (568)
T 2vsy_A 106 QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAF 167 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHH
Confidence 999999999999999999999999999999999 99999999999999999886 34443
No 130
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.69 E-value=1.1e-16 Score=158.05 Aligned_cols=160 Identities=15% Similarity=0.081 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHH-HHHHH-hh
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFF-LKAYA-LA 682 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~-~~a~a-L~ 682 (836)
..++.+|..+...|++++|+..|+++++++|+++++++.+|.++..+|++++|+..|+++++++| +..+. ..+.. +.
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555566655555666666665655555555 32211 11111 11
Q ss_pred ccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch----hHHhhHHHHHHhcC
Q 003249 683 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT----RAHQGLARVHFLKN 758 (836)
Q Consensus 683 ~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~----~A~~~la~~~~~~g 758 (836)
..+- ...++..++++++..|+. +.++.++|.+|...|++++|+..|+++++++|. .++.++|.++...|
T Consensus 86 ~~~~----~~~a~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 86 QQAA----ESPELKRLEQELAANPDN---FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHT----SCHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred hhcc----cchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 0000 001244455555443332 467888888888888888888888888887653 37788888888888
Q ss_pred CHHHHHHHHHHHHH
Q 003249 759 NKTTAYEEMTKLIK 772 (836)
Q Consensus 759 ~~~~A~~~~~kaie 772 (836)
+.++|+..|.++|.
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 88888888877764
No 131
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.68 E-value=7.7e-16 Score=165.02 Aligned_cols=147 Identities=14% Similarity=-0.010 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLE-LRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~-~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++.+|++.... ..+..+...|+.++|++.|+++++
T Consensus 134 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~ 213 (287)
T 3qou_A 134 TDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA 213 (287)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh
Confidence 4444447888999999999999999999999999999999999999999865433 456678888888889988888888
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~ 620 (836)
++|++ +.+++++|.++...|++
T Consensus 214 ~~P~~----------------------------------------------------------~~~~~~la~~l~~~g~~ 235 (287)
T 3qou_A 214 ENPED----------------------------------------------------------AALATQLALQLHQVGRN 235 (287)
T ss_dssp HCTTC----------------------------------------------------------HHHHHHHHHHHHHTTCH
T ss_pred cCCcc----------------------------------------------------------HHHHHHHHHHHHHcccH
Confidence 87766 45678889999999999
Q ss_pred HHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 621 EAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~~--~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
++|++.|+++++.+|++ ++++.++|.++..+|+.++|+..|++++.
T Consensus 236 ~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 236 EEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999985
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.68 E-value=6.5e-17 Score=157.25 Aligned_cols=115 Identities=10% Similarity=-0.105 Sum_probs=88.0
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhh
Q 003249 500 AEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLY 578 (836)
Q Consensus 500 ~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~ 578 (836)
..|+++++++|+ .++++.+|.++..+|++++|+..|+++++++|++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--------------------------------- 69 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--------------------------------- 69 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------------------
Confidence 445666777775 4667777777777777777777777777776655
Q ss_pred hccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003249 579 DRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL 658 (836)
Q Consensus 579 ~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl 658 (836)
+.+|+++|.++..+|++++|++.|++|++++|+++++|+++|.++..+|++++|+
T Consensus 70 -------------------------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~ 124 (151)
T 3gyz_A 70 -------------------------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAK 124 (151)
T ss_dssp -------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence 3456677777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcccchH
Q 003249 659 RKAEESIQMKRSFE 672 (836)
Q Consensus 659 ~~~~~Ai~l~p~~~ 672 (836)
..|++++++.|+.+
T Consensus 125 ~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 125 ECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCHH
Confidence 88888888887763
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.67 E-value=5.5e-16 Score=165.14 Aligned_cols=222 Identities=10% Similarity=-0.023 Sum_probs=178.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh-HHHH
Q 003249 485 RASSLMTKQNVEAALAEINRILGFKLA-LECLELR-------FCFFLALEDYQAALCDVQAILTLSPDYRMFEGR-VAAS 555 (836)
Q Consensus 485 rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~r-------g~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~-~~~~ 555 (836)
+|.-+ .-+++.+|...|.++++++|+ .++|..| +.++..++++.+++..+++++.+.|+...+... .+
T Consensus 13 ~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g-- 89 (282)
T 4f3v_A 13 SAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG-- 89 (282)
T ss_dssp HHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT--
T ss_pred HHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC--
Confidence 33343 578889999999999999997 6888888 788999999999999999999999988553322 10
Q ss_pred HHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003249 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (836)
Q Consensus 556 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P 635 (836)
+ ++.++..- -.-..++...+.+|...|++++|.+.|+.++...|
T Consensus 90 ---------------------~---y~~~~~~v------------~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p 133 (282)
T 4f3v_A 90 ---------------------L---YGDITYPV------------TSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS 133 (282)
T ss_dssp ---------------------T---TCCCEEEC------------SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC
T ss_pred ---------------------c---cccccccc------------CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 0 00000000 00124556677889999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHH
Q 003249 636 SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL 715 (836)
Q Consensus 636 ~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~ 715 (836)
++. +++.+|.+++++|++++|+..|+++++..+.. ....++
T Consensus 134 ~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~--------------------------------------~~~~a~ 174 (282)
T 4f3v_A 134 EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF--------------------------------------LAGAAG 174 (282)
T ss_dssp HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH--------------------------------------HHHHHH
T ss_pred chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc--------------------------------------cHHHHH
Confidence 999 99999999999999999999998877642111 013589
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCC--c---hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003249 716 NNLGSVYVDCGQLDLAADCYSNALKIR--H---TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 785 (836)
Q Consensus 716 ~nlG~~y~~~g~~deAi~~y~kAL~l~--~---~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~ 785 (836)
+++|.++..+|++++|+..|++|+.-. | ..+++++|.++..+|+.++|.+.|+++++.+|+ +.++..+.
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999999999999999754 3 368999999999999999999999999999999 88888774
No 134
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=7.3e-16 Score=180.75 Aligned_cols=158 Identities=12% Similarity=0.053 Sum_probs=135.2
Q ss_pred chHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 588 GSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 588 ~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
.++..+.++++.+|+++.+|+++|.++..+|++++|++.|+++++++|+++++++++|.++..+|++++|++.|++++++
T Consensus 7 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 86 (568)
T 2vsy_A 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA 86 (568)
T ss_dssp --------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--h
Q 003249 668 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--R 745 (836)
Q Consensus 668 ~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~ 745 (836)
+|++ ..+++++|.+|..+|++++|++.|++|++++|. .
T Consensus 87 ~p~~----------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 126 (568)
T 2vsy_A 87 APEH----------------------------------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126 (568)
T ss_dssp CTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCC----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 7765 468999999999999999999999999998764 6
Q ss_pred HHhhHHHHHHhc---CCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003249 746 AHQGLARVHFLK---NNKTTAYEEMTKLIKKARNNASAYEKRS 785 (836)
Q Consensus 746 A~~~la~~~~~~---g~~~~A~~~~~kaie~~p~~a~Ay~~r~ 785 (836)
++.++|.++... |++++|++.|.++++.+|++..+|...+
T Consensus 127 ~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 127 ITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 889999999999 9999999999999999999999998876
No 135
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.66 E-value=4e-15 Score=152.07 Aligned_cols=187 Identities=12% Similarity=0.016 Sum_probs=143.4
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcC----CHHHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALE----DYQAALCDVQA 537 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg----~~~~Ai~d~~~ 537 (836)
.+|+..|.+|.+. .++.+++++|.++...+++++|+..|.++++.+ ++.+++++|.+|.. | ++++|+..|++
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 4577778888875 788899999999988999999999999988764 46778888888887 6 88888888888
Q ss_pred HHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q 003249 538 ILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLR- 616 (836)
Q Consensus 538 al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~- 616 (836)
++. + +++.+++++|.++..
T Consensus 79 A~~--~----------------------------------------------------------g~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 79 AVE--A----------------------------------------------------------GSKSGEIVLARVLVNR 98 (212)
T ss_dssp HHH--T----------------------------------------------------------TCHHHHHHHHHHHTCG
T ss_pred HHH--C----------------------------------------------------------CCHHHHHHHHHHHHcC
Confidence 753 2 234456666767766
Q ss_pred ---cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccC
Q 003249 617 ---LNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYD----TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD 687 (836)
Q Consensus 617 ---l~~~~eAl~~~~~Al~l~P~--~~eal~~~G~il~~----~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~ 687 (836)
.+++++|+..|++|++..|. ++++++++|.+|.. .+++++|+..|++|+++ |.+
T Consensus 99 ~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~---------------- 161 (212)
T 3rjv_A 99 QAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT---------------- 161 (212)
T ss_dssp GGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT----------------
T ss_pred CCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC----------------
Confidence 77888888888888888873 58888888888888 78888888888888865 222
Q ss_pred CCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHcCCchhHHhhHHHH
Q 003249 688 SSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-G-----QLDLAADCYSNALKIRHTRAHQGLARV 753 (836)
Q Consensus 688 ~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~-g-----~~deAi~~y~kAL~l~~~~A~~~la~~ 753 (836)
+.+++++|.+|... | ++++|+..|++|++..+..|...++.+
T Consensus 162 ------------------------~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 162 ------------------------GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp ------------------------THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 24678888888754 3 788888888888888777776666544
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.64 E-value=2.4e-16 Score=167.89 Aligned_cols=188 Identities=9% Similarity=-0.001 Sum_probs=159.0
Q ss_pred CChhhHHHHHHHHHhcCCCChHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCh-HHHH--------------
Q 003249 459 CEGDKRWEDLDKATALDPTLSYPYMYR-------ASSLMTKQNVEAALAEINRILGFKLAL-ECLE-------------- 516 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~ldP~~~~ay~~r-------g~~l~~~g~~~eAi~~~~kai~l~P~~-~~~~-------------- 516 (836)
++..+|...|.+|++++|+.+++|.+| +.++...++..+++..+.+++++.|+. .+++
T Consensus 20 ~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred CCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 344778888999999999999999999 999999999999999999999999852 2222
Q ss_pred -------HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccch
Q 003249 517 -------LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGS 589 (836)
Q Consensus 517 -------~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~a 589 (836)
..+.++..+|+|++|.+.|+.++..+|++
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~-------------------------------------------- 135 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH-------------------------------------------- 135 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH--------------------------------------------
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch--------------------------------------------
Confidence 25678999999999999888887766643
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD--HERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 590 L~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~--~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
. ++|.+|.++.+.+++++|+..|+++.+..+.. .++++++|.++..+|++++|++.|++++.-
T Consensus 136 --------------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 136 --------------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS 200 (282)
T ss_dssp --------------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred --------------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 3 56778889999999999999999887764332 468999999999999999999999999853
Q ss_pred c--cchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 668 K--RSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 668 ~--p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
. |.. ..++++++|.++..+|+.++|.+.|+++++++|.
T Consensus 201 ~~~P~~---------------------------------------~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 201 PAGEAC---------------------------------------ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTTTTT---------------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCccc---------------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 2 221 1468999999999999999999999999998775
No 137
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.63 E-value=2.2e-16 Score=177.39 Aligned_cols=306 Identities=13% Similarity=-0.004 Sum_probs=138.2
Q ss_pred HHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhc--cCCchHHHHHhhhcCChhhHHHHH
Q 003249 391 CVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISS--VTPLGWMYQERSLYCEGDKRWEDL 468 (836)
Q Consensus 391 ~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~--~~~~~~ay~~r~~~~~~~eAi~d~ 468 (836)
......|++++|.+.+++. +++.+|..+|.++..+|++.+|+..|.++-.. +...+..+.. .+..++|+..+
T Consensus 11 ~ll~~~~~ld~A~~fae~~---~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~---~g~~EeAi~yl 84 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC---NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANT---SGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC---CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHh---CCCHHHHHHHH
Confidence 3445678899999998877 56679999999999999988888887543100 0011112222 22235555555
Q ss_pred HHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhh
Q 003249 469 DKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMF 548 (836)
Q Consensus 469 ~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~ 548 (836)
+++++..|+ +.....++.+|.+.|+++++...++ .|+..+|.+.|..+...|+|++|+..|.++
T Consensus 85 ~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------- 148 (449)
T 1b89_A 85 QMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT----------
T ss_pred HHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------
Confidence 555553322 4445555555555555555554443 244445555555555555555555555544
Q ss_pred hhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003249 549 EGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQ 628 (836)
Q Consensus 549 ~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~ 628 (836)
..|.++|.++.++|++++|+++++
T Consensus 149 --------------------------------------------------------~n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 149 --------------------------------------------------------SNFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp --------------------------------------------------------TCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --------------------------------------------------------hhHHHHHHHHHHhccHHHHHHHHH
Confidence 135567778889999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccc
Q 003249 629 LARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDR 708 (836)
Q Consensus 629 ~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~ 708 (836)
+| +++.+|-..+.+..+.|+++.|..+... |...|+
T Consensus 173 KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad-------------------------------------- 208 (449)
T 1b89_A 173 KA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD-------------------------------------- 208 (449)
T ss_dssp HH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH--------------------------------------
T ss_pred Hc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh--------------------------------------
Confidence 99 5788999999999999999999665443 222222
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHH--hcCCHHHHHHHHHHHHHhcC-----CCHH
Q 003249 709 LRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHF--LKNNKTTAYEEMTKLIKKAR-----NNAS 779 (836)
Q Consensus 709 ~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~--~~g~~~~A~~~~~kaie~~p-----~~a~ 779 (836)
-...+...|.+.|++++|+..++++|.+++ ..+...+|.+|. +-|+..++++.|.+.|.+.| .++.
T Consensus 209 -----~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 209 -----ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred -----hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 233577789999999999999999999964 456677777654 45788999999999998888 8887
Q ss_pred HHHHH----HHccCHHHHHHHHHHhHhc------------CCCCcccchhhHHHHHHHhh
Q 003249 780 AYEKR----SEYCDRELTRADLEMVTQL------------DPLRVYPYRYRAAGLIVFLN 823 (836)
Q Consensus 780 Ay~~r----~~~~~~~~A~~D~~~Ai~l------------~P~~~~~y~~r~~~~~~~~~ 823 (836)
.|... -++++++.|+.-.-....- +|..+..|+.=...+..+-.
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 77776 3678999888755444433 67777777554444444333
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.62 E-value=6.6e-15 Score=148.30 Aligned_cols=154 Identities=12% Similarity=0.080 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhc
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~ 683 (836)
+..++++|.++...|++++|++.|++++ +| ++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------ 70 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------------ 70 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence 4678999999999999999999999995 44 78999999999999999999999999999987765
Q ss_pred cccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch------------------h
Q 003249 684 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT------------------R 745 (836)
Q Consensus 684 ~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~------------------~ 745 (836)
+.+++++|.+|..+|++++|+.+|++|+++.|. .
T Consensus 71 ----------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 122 (213)
T 1hh8_A 71 ----------------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 122 (213)
T ss_dssp ----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHH
T ss_pred ----------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchH
Confidence 468999999999999999999999999997543 7
Q ss_pred HHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHccCHHHHHHHHHHhHhcCCCCc
Q 003249 746 AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRELTRADLEMVTQLDPLRV 808 (836)
Q Consensus 746 A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~~~~~~A~~D~~~Ai~l~P~~~ 808 (836)
++.++|.++...|++++|+..|.++++++|++.. +..+.|+..+.++....|...
T Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------~~~~~a~~~~~~~~~~~~~~~ 177 (213)
T 1hh8_A 123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH--------SKIDKAMECVWKQKLYEPVVI 177 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG--------GHHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc--------chHHHHHHHHHhccccccccc
Confidence 8999999999999999999999999999998732 345778888887776665443
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.62 E-value=1.5e-14 Score=154.67 Aligned_cols=182 Identities=11% Similarity=0.042 Sum_probs=150.2
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 003249 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL-------ECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (836)
Q Consensus 474 ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~-------~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~ 546 (836)
.+|.....+...+..+...|++++|+..+.++++..|.. ..++..|.++..+|++++|+..|++++++.++..
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 149 (293)
T 2qfc_A 70 SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS
T ss_pred cchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Confidence 345566778889999999999999999999999988742 2245578899999999999999999999887652
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003249 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (836)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~ 626 (836)
..+ ..+.++++.|.++..+|++++|+..
T Consensus 150 ~~~----------------------------------------------------~~~~~~~~lg~~y~~~~~~~~A~~~ 177 (293)
T 2qfc_A 150 DVY----------------------------------------------------QNLYIENAIANIYAENGYLKKGIDL 177 (293)
T ss_dssp CTT----------------------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chH----------------------------------------------------HHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 211 1145788999999999999999999
Q ss_pred HHHHH---HcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHH
Q 003249 627 LQLAR---QHAASDH----ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLE 699 (836)
Q Consensus 627 ~~~Al---~l~P~~~----eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~ 699 (836)
|++|+ +..|++. .+++++|.++..+|++++|+..|++|+++.+..
T Consensus 178 ~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~---------------------------- 229 (293)
T 2qfc_A 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI---------------------------- 229 (293)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------------------
T ss_pred HHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc----------------------------
Confidence 99999 5677754 689999999999999999999999999874321
Q ss_pred HHhcCCccccchHHHHHHHHHHHHhcCCHHHH-HHHHHHHHcC
Q 003249 700 DALKCPSDRLRKGQALNNLGSVYVDCGQLDLA-ADCYSNALKI 741 (836)
Q Consensus 700 ~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deA-i~~y~kAL~l 741 (836)
.+....+.+|+++|.+|..+|++++| ..+|++|+++
T Consensus 230 ------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 230 ------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp ------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 01112357899999999999999999 7889999987
No 140
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.62 E-value=2.2e-14 Score=146.58 Aligned_cols=181 Identities=13% Similarity=0.018 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHH
Q 003249 496 EAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWL 575 (836)
Q Consensus 496 ~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~ 575 (836)
.+|+..|.++.+. -++.+++++|.+|...|++++|+..|+++++.+
T Consensus 3 ~eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------------------------------- 48 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------------------------------- 48 (212)
T ss_dssp -CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------------
T ss_pred chHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------------------------------
Confidence 4688999999986 467889999999999999999999999987642
Q ss_pred hhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-
Q 003249 576 QLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLN----CPEAAMRSLQLARQHAASDHERLVYEGWILYD- 650 (836)
Q Consensus 576 ~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~----~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~- 650 (836)
++.+++++|.++.. + ++++|+..|++|. ++.++.+++++|.++..
T Consensus 49 ---------------------------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 49 ---------------------------DGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNR 98 (212)
T ss_dssp ---------------------------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCG
T ss_pred ---------------------------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcC
Confidence 24556777777777 6 8999999999995 46899999999999998
Q ss_pred ---cCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHh---
Q 003249 651 ---TSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD--- 724 (836)
Q Consensus 651 ---~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~--- 724 (836)
.+++++|+..|++|+++.|+. ..+.+++++|.+|..
T Consensus 99 ~g~~~d~~~A~~~~~~A~~~~~~~--------------------------------------~~~~a~~~Lg~~y~~g~g 140 (212)
T 3rjv_A 99 QAGATDVAHAITLLQDAARDSESD--------------------------------------AAVDAQMLLGLIYASGVH 140 (212)
T ss_dssp GGSSCCHHHHHHHHHHHTSSTTSH--------------------------------------HHHHHHHHHHHHHHHTSS
T ss_pred CCCccCHHHHHHHHHHHHHcCCCc--------------------------------------chHHHHHHHHHHHHcCCC
Confidence 999999999999999876531 014689999999999
Q ss_pred -cCCHHHHHHHHHHHHcC-CchhHHhhHHHHHHhc-C-----CHHHHHHHHHHHHHhcCCCH
Q 003249 725 -CGQLDLAADCYSNALKI-RHTRAHQGLARVHFLK-N-----NKTTAYEEMTKLIKKARNNA 778 (836)
Q Consensus 725 -~g~~deAi~~y~kAL~l-~~~~A~~~la~~~~~~-g-----~~~~A~~~~~kaie~~p~~a 778 (836)
.+++++|+..|++|+++ .+..+++++|.+|... | ++++|+.-|+++++..+..|
T Consensus 141 ~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A 202 (212)
T 3rjv_A 141 GPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTG 202 (212)
T ss_dssp SSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 89999999999999998 6778999999999764 3 89999999999998854333
No 141
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.61 E-value=1.7e-17 Score=190.16 Aligned_cols=166 Identities=12% Similarity=0.046 Sum_probs=134.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHh
Q 003249 491 TKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWT 569 (836)
Q Consensus 491 ~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~ 569 (836)
.++++++|+..|+++++.+|+ ..++.++|.++..+|+|++|+..|++|++++|++......
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~------------------ 307 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK------------------ 307 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH------------------
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChH------------------
Confidence 567788888888888888886 4678888999999999999999999999999887432100
Q ss_pred HHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 003249 570 IADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (836)
Q Consensus 570 ~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~ 649 (836)
...+.+|....+|+++|.++.++|++++|+.+|++|++++|+++.+|+++|.++.
T Consensus 308 -------------------------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~ 362 (457)
T 1kt0_A 308 -------------------------ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL 362 (457)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 0011223346789999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHH
Q 003249 650 DTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLD 729 (836)
Q Consensus 650 ~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~d 729 (836)
.+|++++|+.+|++|++++|++ ..++.++|.++..+|+++
T Consensus 363 ~~g~~~~A~~~~~~al~l~P~~----------------------------------------~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 363 LMNEFESAKGDFEKVLEVNPQN----------------------------------------KAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HTTCHHHHHHHHHHHHTTC--------------------------------------------CHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCC----------------------------------------HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876 247889999999999998
Q ss_pred HHHH-HHHHHH
Q 003249 730 LAAD-CYSNAL 739 (836)
Q Consensus 730 eAi~-~y~kAL 739 (836)
+|.. .|.+.+
T Consensus 403 ~a~~~~~~~~f 413 (457)
T 1kt0_A 403 ERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 8875 344443
No 142
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.61 E-value=1e-14 Score=146.83 Aligned_cols=133 Identities=13% Similarity=0.129 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~ 558 (836)
+..++++|.++...|++++|+..|++++ +|++.+++++|.+|..+|++++|+..|+++++++|++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------- 70 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------------- 70 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------------
Confidence 3467899999999999999999999996 7788889999999999999999999999999988765
Q ss_pred HHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 003249 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (836)
Q Consensus 559 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~ 638 (836)
+.+|+++|.++..+|++++|+..|++++++.|++.
T Consensus 71 ---------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 71 ---------------------------------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred ---------------------------------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 34677888999999999999999999999888877
Q ss_pred ----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 639 ----------------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 639 ----------------eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+++++|.++..+|++++|+..|+++++++|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 106 LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp EEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999999999999999999876
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.61 E-value=3.3e-15 Score=159.73 Aligned_cols=175 Identities=10% Similarity=-0.030 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHH
Q 003249 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (836)
Q Consensus 601 P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~a 680 (836)
|+++..++.+|.++...|++++|+..|++|++++|+++.+++++|.++..+|++++|+..|++|++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--------- 71 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC---------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------
Confidence 67889999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred hhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchh--HHhhHHHHHHhcC
Q 003249 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR--AHQGLARVHFLKN 758 (836)
Q Consensus 681 L~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~--A~~~la~~~~~~g 758 (836)
..+++++|.+|..+|++++|+..|++|++++|.. ............+
T Consensus 72 -------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 120 (281)
T 2c2l_A 72 -------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (281)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Confidence 4589999999999999999999999999987643 1112222222211
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHH--ccCHHHHHHHHHHhHhcCCCCcccchhhHHHH
Q 003249 759 NKTTAYEEMTKLIKKARNNASAYEKRSE--YCDRELTRADLEMVTQLDPLRVYPYRYRAAGL 818 (836)
Q Consensus 759 ~~~~A~~~~~kaie~~p~~a~Ay~~r~~--~~~~~~A~~D~~~Ai~l~P~~~~~y~~r~~~~ 818 (836)
+. ..+. ...-...|+++......+. .|++++|++.|++|++++|.+......-+.++
T Consensus 121 ~~-~~~~--~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 179 (281)
T 2c2l_A 121 KK-KRWN--SIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179 (281)
T ss_dssp HH-HHHH--HHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHH
T ss_pred HH-HHHH--HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhHHHHHH
Confidence 11 1111 1111334554444333322 36667777777777777776654444433333
No 144
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.61 E-value=1.6e-15 Score=147.75 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
..+.++|..++.+|+|++|+..|++||+++|+++..-
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~------------------------------------------- 48 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE------------------------------------------- 48 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-------------------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-------------------------------------------
Confidence 3466789999999999999999999999999864210
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHH
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-------AASDHERL----VYEGWILYDTSHCEEGLRKA 661 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l-------~P~~~eal----~~~G~il~~~G~~eeAl~~~ 661 (836)
++..+|.++.+|.++|.++.++|++++|+.+|++|+++ +|+++.+| +++|.++..+|+++||+++|
T Consensus 49 ---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y 125 (159)
T 2hr2_A 49 ---AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 125 (159)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence 01112445679999999999999999999999999999 99999999 99999999999999999999
Q ss_pred HHHHhcccch
Q 003249 662 EESIQMKRSF 671 (836)
Q Consensus 662 ~~Ai~l~p~~ 671 (836)
++||+++|+.
T Consensus 126 ~kAlel~p~d 135 (159)
T 2hr2_A 126 KKVVEMIEER 135 (159)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHhcCCCc
Confidence 9999999976
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=2.8e-15 Score=144.50 Aligned_cols=115 Identities=13% Similarity=-0.021 Sum_probs=82.1
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 003249 468 LDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (836)
Q Consensus 468 ~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~ 546 (836)
|+++++++|+++.+++++|.++...|++++|+..|+++++++|+ +.+++++|.++..+|++++|+..|+++++++|+++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 67777777777777777777777777777777777777777775 56667777777777777777777777777766552
Q ss_pred hhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003249 547 MFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRS 626 (836)
Q Consensus 547 ~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~ 626 (836)
.+|+++|.++..+|++++|+..
T Consensus 90 ----------------------------------------------------------~~~~~lg~~~~~~g~~~~A~~~ 111 (148)
T 2vgx_A 90 ----------------------------------------------------------RFPFHAAECLLQXGELAEAESG 111 (148)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------------------------------------------hHHHHHHHHHHHcCCHHHHHHH
Confidence 3455566666666666667766
Q ss_pred HHHHHHcCCCCHHH
Q 003249 627 LQLARQHAASDHER 640 (836)
Q Consensus 627 ~~~Al~l~P~~~ea 640 (836)
|+++++++|++++.
T Consensus 112 ~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 112 LFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHTTCGGG
T ss_pred HHHHHHHCcCCCcc
Confidence 66666666666554
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=4.5e-15 Score=143.08 Aligned_cols=113 Identities=11% Similarity=-0.040 Sum_probs=102.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+.++++++|++..+++++|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|++.|+++++++|++
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred HHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 672 EAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 672 ~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
+.+++++|.+|..+|++++|+.+|++|+++.|.
T Consensus 89 ----------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 89 ----------------------------------------PRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp ----------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred ----------------------------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999988654
No 147
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.59 E-value=5.5e-15 Score=157.97 Aligned_cols=178 Identities=16% Similarity=0.106 Sum_probs=141.6
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|+..|++|++++|+++.+|+++|.++..+|++++|+..|+++++++|+ ..+++++|.+|..+|++++|+..|+++++
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666689999999999999999999999999999999999999999997 67889999999999999999999999999
Q ss_pred hCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 003249 541 LSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCP 620 (836)
Q Consensus 541 l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~ 620 (836)
++|++...++......+ .......|... .....|.+..+....+.++ .|++
T Consensus 101 l~p~~~~~~~~~~~~~~---~~~~~~~~~~~------------------------~~~~~~~~~~i~~~l~~l~--~~~~ 151 (281)
T 2c2l_A 101 LAKEQRLNFGDDIPSAL---RIAKKKRWNSI------------------------EERRIHQESELHSYLTRLI--AAER 151 (281)
T ss_dssp HHHHTTCCCCSHHHHHH---HHHHHHHHHHH------------------------HHTCCCCCCHHHHHHHHHH--HHHH
T ss_pred hCccchhhHHHHHHHHH---HHHHHHHHHHH------------------------HHHHHhhhHHHHHHHHHHH--HHHH
Confidence 99987544433221111 11111122111 1234466666666666655 6899
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcc
Q 003249 621 EAAMRSLQLARQHAASDHERLVYEGWILYDT-SHCEEGLRKAEESIQMK 668 (836)
Q Consensus 621 ~eAl~~~~~Al~l~P~~~eal~~~G~il~~~-G~~eeAl~~~~~Ai~l~ 668 (836)
++|++.+++|++++|++......++.++.+. +++++|.+.|+++.+..
T Consensus 152 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 9999999999999999998888888888776 78999999999998743
No 148
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.59 E-value=2.5e-16 Score=180.47 Aligned_cols=142 Identities=13% Similarity=0.049 Sum_probs=128.4
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----------------HHHHHHHHHHHh
Q 003249 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLAL----------------ECLELRFCFFLA 524 (836)
Q Consensus 461 ~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~----------------~~~~~rg~~~~~ 524 (836)
.++|+..|+++++.+|+++.+|.++|.++..+|++++|+..|++||+++|+. .+|+++|.+|..
T Consensus 250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329 (457)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888999999999999999999999999999999999999999999964 678899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCH
Q 003249 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (836)
Q Consensus 525 lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~ 604 (836)
+|+|++|+.+|++||+++|++ +
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~----------------------------------------------------------~ 351 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSAN----------------------------------------------------------E 351 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----------------------------------------------------------H
T ss_pred hcCHHHHHHHHHHHHhcCCcc----------------------------------------------------------H
Confidence 999999999999999998876 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRK 660 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~ 660 (836)
.+|+++|.++..+|++++|+.+|++|++++|++++++.++|.++..+|++++|...
T Consensus 352 ~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 352 KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999998753
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.58 E-value=4.6e-15 Score=139.07 Aligned_cols=109 Identities=12% Similarity=0.111 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH-HHHHHHHH
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE-AFFLKAYA 680 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~-a~~~~a~a 680 (836)
+.+.++.++|.++.+.|++++|+..|++|++++|+++.+|+++|.++..+|++++|++.|++||+++|++. ++.
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----- 80 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK----- 80 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH-----
Confidence 34788999999999999999999999999999999999999999999999999999999999999988762 111
Q ss_pred hhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 681 L~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
..+.+|.++|.+|..+|++++|+++|++||++.|+
T Consensus 81 -----------------------------~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 81 -----------------------------LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 12468999999999999999999999999997654
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.58 E-value=4.7e-15 Score=144.36 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS-------DHE-----RLVYEGWILYDTSHCEEGLRKAEESIQM---- 667 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~-------~~e-----al~~~G~il~~~G~~eeAl~~~~~Ai~l---- 667 (836)
+..++++|..+..+|++++|+..|++|++++|+ +.. +|.++|.++..+|+|++|+.+|++||++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567899999999999999999999999999999 555 9999999999999999999999999987
Q ss_pred ---ccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHH----HHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 668 ---KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQAL----NNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 668 ---~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~----~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
+|++ +.+| +|+|.++..+|++++|+.+|++||+
T Consensus 91 ~e~~pd~----------------------------------------~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDE----------------------------------------GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTH----------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCch----------------------------------------HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5544 4566 9999999999999999999999999
Q ss_pred CCchh
Q 003249 741 IRHTR 745 (836)
Q Consensus 741 l~~~~ 745 (836)
++|.+
T Consensus 131 l~p~d 135 (159)
T 2hr2_A 131 MIEER 135 (159)
T ss_dssp HHHHC
T ss_pred cCCCc
Confidence 97753
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.57 E-value=5.1e-15 Score=140.87 Aligned_cols=123 Identities=12% Similarity=-0.046 Sum_probs=81.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 467 DLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 467 d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
.|.++++++|++..+++.+|.++...|++++|+..|+++++++|+ +..++++|.++..+|++++|+..|+++++++|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 366777777777777777777777777777777777777777775 4666667777777777777777777777766655
Q ss_pred hhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003249 546 RMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMR 625 (836)
Q Consensus 546 ~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~ 625 (836)
+ .+|+++|.++..+|++++|+.
T Consensus 86 ~----------------------------------------------------------~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 86 P----------------------------------------------------------RFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp T----------------------------------------------------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred c----------------------------------------------------------HHHHHHHHHHHHcCCHHHHHH
Confidence 2 344556666666666666666
Q ss_pred HHHHHHHcCCCCHHHHHHHHHH
Q 003249 626 SLQLARQHAASDHERLVYEGWI 647 (836)
Q Consensus 626 ~~~~Al~l~P~~~eal~~~G~i 647 (836)
.|+++++++|++++....+..+
T Consensus 108 ~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 108 GFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHhCCCCcchHHHHHHH
Confidence 6666666666666554444333
No 152
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.57 E-value=1.1e-13 Score=126.42 Aligned_cols=133 Identities=13% Similarity=0.135 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHH
Q 003249 480 YPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLH 558 (836)
Q Consensus 480 ~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~ 558 (836)
.+|+.+|.++...|++++|+..|+++++.+|+ ...+..+|.++...|++++|+..|+++++++|+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------------- 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-------------
Confidence 57899999999999999999999999999996 5778889999999999999999999999887765
Q ss_pred HHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 003249 559 MLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH 638 (836)
Q Consensus 559 ~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~ 638 (836)
...++.+|.++...|++++|+..++++++..|+++
T Consensus 69 ---------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 69 ---------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ---------------------------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 33456677888999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 639 eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
.++..+|.++..+|++++|+..|+++++++|+
T Consensus 104 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999998875
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.56 E-value=1.1e-13 Score=147.98 Aligned_cols=177 Identities=8% Similarity=-0.073 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
..+...+..+...|+|++|+..|+++++..|.......
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~------------------------------------------ 113 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ------------------------------------------ 113 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHH------------------------------------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHH------------------------------------------
Confidence 34556788899999999999999999999887522100
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~------~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
....++..|.++...|++++|+..|++|+++.+.. +.+++++|.++..+|++++|+..|++|++
T Consensus 114 ----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~ 183 (293)
T 2qfc_A 114 ----------FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp ----------HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 02335567888899999999999999999876655 67999999999999999999999999996
Q ss_pred cccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc---
Q 003249 667 MKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--- 743 (836)
Q Consensus 667 l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--- 743 (836)
+.... ++. ......+++|+|.+|..+|++++|+..|++|+++.+
T Consensus 184 ~~~~~----------------~~~-----------------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 184 QLEAL----------------HDN-----------------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp HHHHS----------------CCC-----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhc----------------Ccc-----------------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 52111 000 000125899999999999999999999999998732
Q ss_pred -----hhHHhhHHHHHHhcCCHHHH-HHHHHHHHHhc
Q 003249 744 -----TRAHQGLARVHFLKNNKTTA-YEEMTKLIKKA 774 (836)
Q Consensus 744 -----~~A~~~la~~~~~~g~~~~A-~~~~~kaie~~ 774 (836)
..++.++|.++..+|++++| ...|++|+++.
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 46899999999999999999 66699999764
No 154
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.56 E-value=7.7e-14 Score=149.18 Aligned_cols=174 Identities=12% Similarity=0.060 Sum_probs=141.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hH----H-HH-HHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 003249 482 YMYRASSLMTKQNVEAALAEINRILGFKLA-LE----C-LE-LRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (836)
Q Consensus 482 y~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~----~-~~-~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~ 554 (836)
+...+..+...|++++|+..++++++..|. +. . ++ ..|.++...|++++|+..|++++.+.+.....+.
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~---- 153 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ---- 153 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH----
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH----
Confidence 344577889999999999999999998774 32 1 33 4788999999999999999999998776532110
Q ss_pred HHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 003249 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ-- 632 (836)
Q Consensus 555 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~-- 632 (836)
.+.++.+.|.++..+|++++|+..|++|++
T Consensus 154 ------------------------------------------------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 154 ------------------------------------------------NLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 134678999999999999999999999994
Q ss_pred -----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCcc
Q 003249 633 -----HAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSD 707 (836)
Q Consensus 633 -----l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~ 707 (836)
..|..+.+++++|.++..+|++++|+..+++|+++.+... +
T Consensus 186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~----------------------------------~ 231 (293)
T 3u3w_A 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN----------------------------------S 231 (293)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------------------------B
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC----------------------------------c
Confidence 3344456899999999999999999999999998754331 1
Q ss_pred ccchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcC
Q 003249 708 RLRKGQALNNLGSVYVDCG-QLDLAADCYSNALKI 741 (836)
Q Consensus 708 ~~~~~~a~~nlG~~y~~~g-~~deAi~~y~kAL~l 741 (836)
....+.+|+++|.+|..+| .+++|+++|++|+++
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 1223679999999999999 579999999999987
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.56 E-value=1e-14 Score=138.73 Aligned_cols=114 Identities=11% Similarity=-0.022 Sum_probs=98.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 591 SVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 591 ~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
..+.+++.++|++...++.+|.++.+.|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35667788899999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred hHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 671 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 671 ~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
+ +.+++++|.+|..+|++++|+.+|++++++.|.
T Consensus 85 ~----------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 85 E----------------------------------------PRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp C----------------------------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred C----------------------------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6 357889999999999999999999999988653
No 156
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.55 E-value=1.1e-13 Score=126.40 Aligned_cols=133 Identities=17% Similarity=0.234 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhcc
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADS 684 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~ 684 (836)
.+|+.+|.++...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|++++++.|..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------- 68 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------------- 68 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc-------------
Confidence 5688999999999999999999999999999999999999999999999999999999999876544
Q ss_pred ccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCCHHH
Q 003249 685 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTT 762 (836)
Q Consensus 685 ~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~~~~ 762 (836)
..++.++|.++...|++++|+..|++++++.| ..++..+|.++...|++++
T Consensus 69 ---------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 121 (136)
T 2fo7_A 69 ---------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121 (136)
T ss_dssp ---------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred ---------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHH
Confidence 35788999999999999999999999998765 4678899999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 003249 763 AYEEMTKLIKKARNN 777 (836)
Q Consensus 763 A~~~~~kaie~~p~~ 777 (836)
|+..+.++++++|++
T Consensus 122 A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 122 AIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHccCCCC
Confidence 999999999999874
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.5e-14 Score=131.41 Aligned_cols=102 Identities=11% Similarity=0.011 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHH
Q 003249 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (836)
Q Consensus 601 P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~a 680 (836)
|..+..|+.+|..+.+.|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--------- 71 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------
Confidence 44577889999999999999999999999999999999999999999999999999999999999887765
Q ss_pred hhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003249 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR 742 (836)
Q Consensus 681 L~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~ 742 (836)
+.+|.++|.+|..+|++++|+.+|+++++++
T Consensus 72 -------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 -------------------------------VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp -------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 3578889999999999999999999998887
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.55 E-value=2.9e-14 Score=133.59 Aligned_cols=112 Identities=6% Similarity=0.034 Sum_probs=90.1
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 003249 477 TLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (836)
Q Consensus 477 ~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~ 555 (836)
+.+.++.++|.+++.+|+|++|+..|++||+++|+ ..+|.++|.+|..+|++++|+.+|+++|+++|++...+...
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--- 82 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI--- 82 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH---
Confidence 34678899999999999999999999999999997 67899999999999999999999999999999875422111
Q ss_pred HHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003249 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA 635 (836)
Q Consensus 556 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P 635 (836)
+.+|+++|.++..+|++++|++.|+++++..|
T Consensus 83 ------------------------------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 83 ------------------------------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred ------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 24566677777777777777777777777666
Q ss_pred CCHHH
Q 003249 636 SDHER 640 (836)
Q Consensus 636 ~~~ea 640 (836)
+ ++.
T Consensus 115 ~-~~~ 118 (127)
T 4gcn_A 115 D-PEL 118 (127)
T ss_dssp C-HHH
T ss_pred C-HHH
Confidence 3 443
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=6.1e-14 Score=129.73 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=79.1
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 003249 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (836)
Q Consensus 476 P~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~ 554 (836)
|..+..|..+|..+...|++++|+..|+++|+++|+ +.+++++|.++..+|++++|+.+|+++++++|++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--------- 71 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--------- 71 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---------
Confidence 345566777777777777777777777777777775 4666677777777777777777777777766654
Q ss_pred HHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003249 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (836)
Q Consensus 555 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~ 634 (836)
+.+|+++|.++..+|++++|+..|+++++++
T Consensus 72 -------------------------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 -------------------------------------------------VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 2345566666667777777777777777777
Q ss_pred ------CCCHHHHHHHHHHHH
Q 003249 635 ------ASDHERLVYEGWILY 649 (836)
Q Consensus 635 ------P~~~eal~~~G~il~ 649 (836)
|++.+++..++.+..
T Consensus 103 p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 103 AEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTTTHHHHHHHHHHHHH
T ss_pred cccCCchhHHHHHHHHHHHHH
Confidence 666666666665544
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.52 E-value=2.7e-13 Score=129.94 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~ 557 (836)
+..|..+|.++...|++++|+..|.++++++|+ ..++.++|.++..+|++++|+..|+++++++|++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------------ 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence 577899999999999999999999999999996 6788899999999999999999999999988865
Q ss_pred HHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003249 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (836)
Q Consensus 558 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~ 637 (836)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 81 ----------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 81 ----------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 3456788889999999999999999999999999
Q ss_pred HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcc
Q 003249 638 HERLVYEGWI--LYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 638 ~eal~~~G~i--l~~~G~~eeAl~~~~~Ai~l~ 668 (836)
..++..++.+ +..+|++++|++.++++..+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 115 KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999555554 889999999999999987653
No 161
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.52 E-value=1e-14 Score=141.72 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=97.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcccchHHHHHHHHHhhcc
Q 003249 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHC----------EEGLRKAEESIQMKRSFEAFFLKAYALADS 684 (836)
Q Consensus 615 ~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~----------eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~ 684 (836)
.+++++++|+..++++++++|+++++|+++|.++..+|++ ++|+..|++||+++|++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~------------- 79 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK------------- 79 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-------------
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-------------
Confidence 4577899999999999999999999999999999999886 59999999999998876
Q ss_pred ccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHcCCchhHHhhHHHH
Q 003249 685 SQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG-----------QLDLAADCYSNALKIRHTRAHQGLARV 753 (836)
Q Consensus 685 ~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g-----------~~deAi~~y~kAL~l~~~~A~~~la~~ 753 (836)
.++|+|+|++|..+| ++++|+.+|++||+++|..
T Consensus 80 ---------------------------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~-------- 124 (158)
T 1zu2_A 80 ---------------------------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-------- 124 (158)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC--------
T ss_pred ---------------------------HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC--------
Confidence 468889999998875 8999999999999998874
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003249 754 HFLKNNKTTAYEEMTKLIKKARNNASAYEKRS 785 (836)
Q Consensus 754 ~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~ 785 (836)
..|.+++++.++.++.++...
T Consensus 125 -----------~~y~~al~~~~ka~el~~~~~ 145 (158)
T 1zu2_A 125 -----------THYLKSLEMTAKAPQLHAEAY 145 (158)
T ss_dssp -----------HHHHHHHHHHHTHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHhCHhccCccc
Confidence 467788888888888887653
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=1.2e-13 Score=134.24 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=89.1
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 003249 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (836)
Q Consensus 475 dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~ 553 (836)
+|..+..|+.+|.++...|++++|+..|+++++++|+ ..+++++|.+|..+|++++|+.+|+++++++|++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------- 78 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-------- 78 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------
Confidence 4556777888888888888888888888888888885 5677778888888888888888888877777665
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003249 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (836)
Q Consensus 554 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l 633 (836)
+.+|+++|.++..+|++++|+..|++++++
T Consensus 79 --------------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 79 --------------------------------------------------SKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 245666777777788888888888888888
Q ss_pred CCCCHHHHHHHHHHHH
Q 003249 634 AASDHERLVYEGWILY 649 (836)
Q Consensus 634 ~P~~~eal~~~G~il~ 649 (836)
+|+++++++++|....
T Consensus 109 ~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 109 EGNGGSDAMKRGLETT 124 (164)
T ss_dssp HSSSCCHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHH
Confidence 8888777777776544
No 163
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.50 E-value=8.2e-14 Score=136.68 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=76.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHH
Q 003249 616 RLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVV 695 (836)
Q Consensus 616 ~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i 695 (836)
..|++++|+..++++++.+|+++++++.+|.++..+|++++|+..|+++++++|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------------------------ 77 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN------------------------ 77 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC------------------------
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------------------------
Confidence 35556666666666666666666666666666666666666666666666655543
Q ss_pred HHHHHHhcCCccccchHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHH
Q 003249 696 SLLEDALKCPSDRLRKGQALNNLGSV-YVDCGQL--DLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKL 770 (836)
Q Consensus 696 ~~l~~Al~~~~~~~~~~~a~~nlG~~-y~~~g~~--deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~ka 770 (836)
+.++.++|.+ |...|++ ++|+..|+++++++|. .++.++|.++...|++++|+..|.++
T Consensus 78 ----------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 78 ----------------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp ----------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2355666666 5566666 6666666666665443 45666666666666666666666666
Q ss_pred HHhcCCCHHHH
Q 003249 771 IKKARNNASAY 781 (836)
Q Consensus 771 ie~~p~~a~Ay 781 (836)
++++|++....
T Consensus 142 l~~~p~~~~~~ 152 (177)
T 2e2e_A 142 MDLNSPRINRT 152 (177)
T ss_dssp HHTCCTTSCHH
T ss_pred HhhCCCCccHH
Confidence 66666654433
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.50 E-value=3.4e-14 Score=142.59 Aligned_cols=152 Identities=9% Similarity=-0.090 Sum_probs=110.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~ 556 (836)
.+....+-+......|++++|.+.++...+..+. ...+..+|..+...|+|++|+..|++++++.|++..+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~---- 78 (198)
T 2fbn_A 3 SSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI---- 78 (198)
T ss_dssp -------------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH----
T ss_pred CcccccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh----
Confidence 3445556677778888888888888877666665 46677899999999999999999999999999876432210
Q ss_pred HHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003249 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (836)
Q Consensus 557 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~ 636 (836)
+......+ ...+|+++|.++..+|++++|+..++++++++|+
T Consensus 79 ---------------------------------~~~~~~~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 79 ---------------------------------LLDKKKNI-----EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp ---------------------------------HHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred ---------------------------------HHHHHHHH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 00000111 1467899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 637 DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 637 ~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999998876
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.50 E-value=3.9e-13 Score=128.88 Aligned_cols=130 Identities=12% Similarity=0.027 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhc
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALAD 683 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~ 683 (836)
+..++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 80 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY------------ 80 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------------
Confidence 57889999999999999999999999999999999999999999999999999999999999887655
Q ss_pred cccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHH--hhHHHHHHhcCC
Q 003249 684 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAH--QGLARVHFLKNN 759 (836)
Q Consensus 684 ~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~--~~la~~~~~~g~ 759 (836)
+.++.++|.+|..+|++++|+.+|++++++.|. .++ .+++..+...|+
T Consensus 81 ----------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~ 132 (166)
T 1a17_A 81 ----------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132 (166)
T ss_dssp ----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999998654 344 444445777888
Q ss_pred HHHHHHHHHHHHHh
Q 003249 760 KTTAYEEMTKLIKK 773 (836)
Q Consensus 760 ~~~A~~~~~kaie~ 773 (836)
+++|+..+.++.++
T Consensus 133 ~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 133 FERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHcccchHHH
Confidence 88888888776654
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.49 E-value=1.4e-13 Score=133.70 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHH
Q 003249 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 679 (836)
Q Consensus 600 ~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~ 679 (836)
+|.++..|+.+|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------- 78 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-------- 78 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------
Confidence 456677888888888888888888888888888888888888888888888888888888888888877655
Q ss_pred HhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 680 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 680 aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
+.+|+++|.+|..+|++++|+.+|+++++++|.
T Consensus 79 --------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 79 --------------------------------SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred --------------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 356778888888888888888888777777543
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.48 E-value=5e-14 Score=141.36 Aligned_cols=145 Identities=10% Similarity=0.064 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h----------------HHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-L----------------ECLELRFCFFLA 524 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~----------------~~~~~rg~~~~~ 524 (836)
++|...++...+-.|..+..+..+|.++...|++++|+..|++++++.|+ + .++.++|.++..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 100 (198)
T 2fbn_A 21 GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100 (198)
T ss_dssp -CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555666788999999999999999999999999999985 4 678889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCH
Q 003249 525 LEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKG 604 (836)
Q Consensus 525 lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~ 604 (836)
+|++++|+.+|+++++++|++ +
T Consensus 101 ~~~~~~A~~~~~~al~~~p~~----------------------------------------------------------~ 122 (198)
T 2fbn_A 101 NKDYPKAIDHASKVLKIDKNN----------------------------------------------------------V 122 (198)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC----------------------------------------------------------H
T ss_pred hcCHHHHHHHHHHHHHhCccc----------------------------------------------------------H
Confidence 999999999999999988766 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHH
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL-RKAEES 664 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl-~~~~~A 664 (836)
.+++++|.++..+|++++|+..|+++++++|++++++..++.++..+|+.+++. ..|.+.
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999999999999999999999999999999998887 333333
No 168
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.48 E-value=3.7e-13 Score=123.75 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=109.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHH
Q 003249 600 DAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAY 679 (836)
Q Consensus 600 ~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~ 679 (836)
.|..+.+|+.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-------- 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--------
Confidence 478899999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred HhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHhc
Q 003249 680 ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFLK 757 (836)
Q Consensus 680 aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~ 757 (836)
+.++.++|.+|..+|++++|+..|+++++++|. .++..++.++..+
T Consensus 84 --------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 84 --------------------------------IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred --------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 467899999999999999999999999998764 6788899888877
Q ss_pred CC
Q 003249 758 NN 759 (836)
Q Consensus 758 g~ 759 (836)
|+
T Consensus 132 ~~ 133 (133)
T 2lni_A 132 YN 133 (133)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 169
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.48 E-value=3.5e-13 Score=122.90 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=112.2
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhh
Q 003249 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEG 550 (836)
Q Consensus 472 i~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~ 550 (836)
.+.+|.++..+..+|.++...|++++|+..|+++++++|+ ...+..+|.++..+|++++|+..|+++++++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----- 79 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----- 79 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-----
Confidence 4556778899999999999999999999999999999996 6778889999999999999999999999888765
Q ss_pred hHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003249 551 RVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLA 630 (836)
Q Consensus 551 ~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~A 630 (836)
+.+++.+|.++..+|++++|+..|+++
T Consensus 80 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 80 -----------------------------------------------------SKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345677888899999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCHH
Q 003249 631 RQHAASDHERLVYEGWILYDTSHCE 655 (836)
Q Consensus 631 l~l~P~~~eal~~~G~il~~~G~~e 655 (836)
++++|+++.++..+|.++..+|+++
T Consensus 107 ~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 107 LELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998863
No 170
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.47 E-value=1.2e-12 Score=139.97 Aligned_cols=164 Identities=12% Similarity=0.123 Sum_probs=136.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHH
Q 003249 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE------RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (836)
Q Consensus 607 ~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e------al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~a 680 (836)
+...+..+...|++++|+..++++++..|..++ .+..+|.++...|++++|+..|++|+++.+...
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-------- 149 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-------- 149 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--------
Confidence 345567788999999999999999999888877 233589999999999999999999998754331
Q ss_pred hhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC------Cc---hhHHhhHH
Q 003249 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI------RH---TRAHQGLA 751 (836)
Q Consensus 681 L~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l------~~---~~A~~~la 751 (836)
+......+++++|.+|..+|++++|+..|++|+++ ++ ..++.++|
T Consensus 150 --------------------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 3u3w_A 150 --------------------------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 01112458999999999999999999999999953 11 25889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCC------HHHHHHHHH----cc-CHHHHHHHHHHhHhcC
Q 003249 752 RVHFLKNNKTTAYEEMTKLIKKARNN------ASAYEKRSE----YC-DRELTRADLEMVTQLD 804 (836)
Q Consensus 752 ~~~~~~g~~~~A~~~~~kaie~~p~~------a~Ay~~r~~----~~-~~~~A~~D~~~Ai~l~ 804 (836)
.+|..+|++++|+..++++|++.++. +.+|+++|. .| ++++|+..|++|+++-
T Consensus 204 ~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999987655 899999964 58 4699999999999763
No 171
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.47 E-value=5.3e-13 Score=122.72 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=106.4
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHH
Q 003249 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVA 553 (836)
Q Consensus 475 dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~ 553 (836)
.|..+.+|+.+|.++...|++++|+..|+++++++|+ ..+++++|.++..+|++++|+..|+++++++|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-------- 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--------
Confidence 5777889999999999999999999999999999996 6788889999999999999999999999887765
Q ss_pred HHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003249 554 ASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH 633 (836)
Q Consensus 554 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l 633 (836)
+.+++++|.++..+|++++|+..|++++++
T Consensus 84 --------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 84 --------------------------------------------------IKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 345677788888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q 003249 634 AASDHERLVYEGWILYDTSH 653 (836)
Q Consensus 634 ~P~~~eal~~~G~il~~~G~ 653 (836)
+|++.+++..+|.++..+|+
T Consensus 114 ~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 114 DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp CGGGTHHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHhcC
Confidence 99999999999999988774
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.47 E-value=3.1e-13 Score=134.34 Aligned_cols=166 Identities=12% Similarity=0.073 Sum_probs=129.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhh
Q 003249 489 LMTKQNVEAALAEINRILGFKL-A-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHID 566 (836)
Q Consensus 489 l~~~g~~~eAi~~~~kai~l~P-~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~ 566 (836)
++..|++++|...++.... +| . ..++..+|.++..+|++++|+..|++++++-....
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------- 60 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG-------------------- 60 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--------------------
Confidence 4578999999995555544 66 3 46788899999999999999999999998643220
Q ss_pred hHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC----HH
Q 003249 567 NWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH---AASD----HE 639 (836)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l---~P~~----~e 639 (836)
..|..+.++.++|.++...|++++|++.+++++++ .|++ +.
T Consensus 61 --------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 108 (203)
T 3gw4_A 61 --------------------------------DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASA 108 (203)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred --------------------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 01223567889999999999999999999999998 5533 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHH
Q 003249 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 719 (836)
Q Consensus 640 al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG 719 (836)
+++++|.++..+|++++|+..+++++++.+... +....+.++.++|
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------------~~~~~~~~~~~la 154 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQAD----------------------------------DQVAIACAFRGLG 154 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----------------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc----------------------------------chHHHHHHHHHHH
Confidence 799999999999999999999999997643220 0011145789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHcC
Q 003249 720 SVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 720 ~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+|..+|++++|+..|++|+++
T Consensus 155 ~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999987
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.46 E-value=2.8e-13 Score=125.79 Aligned_cols=100 Identities=10% Similarity=-0.025 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~ 685 (836)
.++.+|..+.+.|++++|+..|+++++++|+++++|+.+|.++..+|++++|+..|++|++++|++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------------- 84 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-------------- 84 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------
Confidence 478999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchh
Q 003249 686 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTR 745 (836)
Q Consensus 686 l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~ 745 (836)
+.++.++|.+|...|++++|+..|+++++++|..
T Consensus 85 --------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 85 --------------------------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred --------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 4689999999999999999999999999998754
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.45 E-value=3.3e-13 Score=130.76 Aligned_cols=69 Identities=10% Similarity=-0.002 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~ 672 (836)
+.+|+++|.++.++|++++|+.+++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 344555555555555555555555555555555555555555555555555555555555555555553
No 175
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.44 E-value=7.2e-13 Score=129.88 Aligned_cols=84 Identities=10% Similarity=0.113 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHH-HHhcCCH--HHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCF-FLALEDY--QAALCDVQA 537 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~-~~~lg~~--~~Ai~d~~~ 537 (836)
++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+ +..+..+|.+ +...|++ ++|+..|++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666664 3455555655 5555665 666655555
Q ss_pred HHhhCCCc
Q 003249 538 ILTLSPDY 545 (836)
Q Consensus 538 al~l~P~~ 545 (836)
+++++|++
T Consensus 107 al~~~p~~ 114 (177)
T 2e2e_A 107 ALALDSNE 114 (177)
T ss_dssp HHHHCTTC
T ss_pred HHHhCCCc
Confidence 55555443
No 176
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.44 E-value=5.2e-13 Score=121.79 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=108.9
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHH
Q 003249 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a 678 (836)
.+|.++..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++++.|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------- 79 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY------- 79 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-------
Confidence 4467788999999999999999999999999999999999999999999999999999999999999876654
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHh
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFL 756 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~ 756 (836)
+.++.++|.+|...|++++|+..|++++++.| ..++..+|.++..
T Consensus 80 ---------------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 80 ---------------------------------SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 35788999999999999999999999999865 3678889999888
Q ss_pred cCCH
Q 003249 757 KNNK 760 (836)
Q Consensus 757 ~g~~ 760 (836)
.|++
T Consensus 127 ~~~~ 130 (131)
T 2vyi_A 127 LREA 130 (131)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 8865
No 177
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.44 E-value=1.1e-13 Score=134.43 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=81.2
Q ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcC---
Q 003249 461 GDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNV----------EAALAEINRILGFKLA-LECLELRFCFFLALE--- 526 (836)
Q Consensus 461 ~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~----------~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg--- 526 (836)
.++|+..+++|++++|+++.+|+++|.++.+++++ ++||..|++||+++|+ .++|+++|.+|..+|
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~ 97 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT 97 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence 38999999999999999999999999999999886 5999999999999997 689999999999885
Q ss_pred --------CHHHHHHHHHHHHhhCCCchh
Q 003249 527 --------DYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 527 --------~~~~Ai~d~~~al~l~P~~~~ 547 (836)
++++|+.+|++||+++|++..
T Consensus 98 P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 98 PDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 899999999999999999854
No 178
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.44 E-value=8.1e-13 Score=123.11 Aligned_cols=107 Identities=12% Similarity=0.021 Sum_probs=96.8
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHH
Q 003249 598 ESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 677 (836)
Q Consensus 598 ~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~ 677 (836)
..+|.++..++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------ 76 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------ 76 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh------
Confidence 35688999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred HHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 678 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 678 a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
+.+++++|.+|..+|++++|+..|++|+++.|.
T Consensus 77 ----------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 ----------------------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 468999999999999999999999999998654
No 179
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.43 E-value=1.2e-12 Score=121.87 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=49.1
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 473 ~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
..+|.++..|+.+|.++...|++++|+..|+++++++|+ ..+++++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 345667777777777777777777777777777777775 4566667777777777777777776666666554
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.42 E-value=9.6e-13 Score=122.14 Aligned_cols=101 Identities=13% Similarity=0.015 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
..++.+|..+...|++++|+..|+++++++|++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~----------------------------------------------- 50 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER----------------------------------------------- 50 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----------------------------------------------
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----------------------------------------------
Confidence 346788999999999999999999999988776
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+.+|+.+|.++..+|++++|+..|++|++++|+++++++++|.++..+|++++|+..|+++++++|++
T Consensus 51 -----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 51 -----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 45678889999999999999999999999999999999999999999999999999999999999876
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.42 E-value=2.9e-14 Score=164.21 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=116.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHH
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQ 556 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~ 556 (836)
.+.+|.++|.++..+|++++|+..|++|++++|+ ..+++++|.+|..+|++++|+.+|++|++++|++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----------- 73 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----------- 73 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-----------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----------
Confidence 3456778888999999999999999999999997 6788899999999999999999999999888766
Q ss_pred HHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003249 557 LHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAAS 636 (836)
Q Consensus 557 ~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~ 636 (836)
+.+|+++|.++..+|++++|++.|++|++++|+
T Consensus 74 -----------------------------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~ 106 (477)
T 1wao_1 74 -----------------------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106 (477)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred -----------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 345778888899999999999999999999999
Q ss_pred CHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHhcccch
Q 003249 637 DHERLVYEGWI--LYDTSHCEEGLRKAE-----------ESIQMKRSF 671 (836)
Q Consensus 637 ~~eal~~~G~i--l~~~G~~eeAl~~~~-----------~Ai~l~p~~ 671 (836)
+++++.++|.+ +.++|++++|++.++ ++++++|++
T Consensus 107 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 107 DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 99999999999 889999999999999 888888765
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.41 E-value=1.2e-13 Score=151.70 Aligned_cols=142 Identities=13% Similarity=0.059 Sum_probs=86.5
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH------------------HHHHHHHHHHhcCCHHHHHH
Q 003249 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALE------------------CLELRFCFFLALEDYQAALC 533 (836)
Q Consensus 472 i~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~------------------~~~~rg~~~~~lg~~~~Ai~ 533 (836)
++..|..+..|..+|.++...|++++|+..|++|+++.|+.. +++++|.+|..+|+|++|+.
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334455677899999999999999999999999999999743 67788888888888888888
Q ss_pred HHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHH
Q 003249 534 DVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLL 613 (836)
Q Consensus 534 d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~ 613 (836)
+|+++|+++|++ +.+|+++|.+
T Consensus 252 ~~~~al~~~p~~----------------------------------------------------------~~a~~~lg~a 273 (338)
T 2if4_A 252 HCNIVLTEEEKN----------------------------------------------------------PKALFRRGKA 273 (338)
T ss_dssp HHHHHHHHCTTC----------------------------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHhCCCC----------------------------------------------------------HHHHHHHHHH
Confidence 888888887765 3467788888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcccch
Q 003249 614 LLRLNCPEAAMRSLQLARQHAASDHERLVYEGWI-LYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 614 l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~i-l~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+..+|++++|+.+|+++++++|++++++.+++.+ ....++.++|...|.+++...|++
T Consensus 274 ~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 274 KAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp HHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 8999999999999999999999999999999888 456677888888899998887765
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.41 E-value=6.3e-13 Score=128.78 Aligned_cols=101 Identities=11% Similarity=-0.001 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQH------------------AASDHERLVYEGWILYDTSHCEEGLRKAEESI 665 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l------------------~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai 665 (836)
+..+..+|..+.+.|++++|+..|++|+++ +|.++.+|+++|.++..+|++++|+..|++||
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 566777888888888888888888888887 55556677777777777777777777777777
Q ss_pred hcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch
Q 003249 666 QMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 666 ~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~ 744 (836)
+++|++ +.+|+++|.+|..+|++++|+.+|++|++++|.
T Consensus 91 ~~~p~~----------------------------------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KREETN----------------------------------------EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHSTTC----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcCCcc----------------------------------------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 666554 345666677777777777777777777666654
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.41 E-value=4.9e-14 Score=162.39 Aligned_cols=127 Identities=12% Similarity=0.059 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL 681 (836)
..+.+++++|.++.+.|++++|++.|++|++++|+++.+|+++|.++..+|++++|++.|++|++++|++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------- 73 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------- 73 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------
Confidence 3455666777777788888888888888888888888888888888888888888888888888776655
Q ss_pred hccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHH--HHhc
Q 003249 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARV--HFLK 757 (836)
Q Consensus 682 ~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~--~~~~ 757 (836)
+.+|+++|.+|..+|++++|+++|++|++++|. .++.+++.+ +..+
T Consensus 74 ------------------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 123 (477)
T 1wao_1 74 ------------------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 123 (477)
T ss_dssp ------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888888777553 456666665 5555
Q ss_pred CCHHHHHHHHH
Q 003249 758 NNKTTAYEEMT 768 (836)
Q Consensus 758 g~~~~A~~~~~ 768 (836)
|++++|++.+.
T Consensus 124 g~~~~A~~~~~ 134 (477)
T 1wao_1 124 KAFERAIAGDE 134 (477)
T ss_dssp HHHCCC-----
T ss_pred HHHHHHhcccc
Confidence 66666665555
No 185
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.40 E-value=8.5e-12 Score=112.62 Aligned_cols=121 Identities=14% Similarity=0.117 Sum_probs=101.0
Q ss_pred cCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhh
Q 003249 474 LDPTL-SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGR 551 (836)
Q Consensus 474 ldP~~-~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~ 551 (836)
++|.. +.+|+.+|.++...|++++|+..|+++++.+|+ ...+..+|.++...|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------ 76 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------ 76 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc------
Confidence 46766 788999999999999999999999999999986 5778888999999999999999999888887765
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003249 552 VAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLAR 631 (836)
Q Consensus 552 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al 631 (836)
...++.+|.++...|++++|+..+++++
T Consensus 77 ----------------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 77 ----------------------------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2345667778888999999999999999
Q ss_pred HcCCCCHHHHHHHHHHHHhcC
Q 003249 632 QHAASDHERLVYEGWILYDTS 652 (836)
Q Consensus 632 ~l~P~~~eal~~~G~il~~~G 652 (836)
+++|+++.++..+|.++..+|
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 105 ELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHCTTCHHHHHHHHHHHHHHC
T ss_pred HhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999887765
No 186
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.40 E-value=5.2e-12 Score=114.03 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=96.8
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHH
Q 003249 600 DAPK-GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKA 678 (836)
Q Consensus 600 ~P~~-~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a 678 (836)
+|.. +..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++++.|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------- 76 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------- 76 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-------
Confidence 4655 77888999999999999999999999999999999999999999999999999999999988766544
Q ss_pred HHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHHHHh
Q 003249 679 YALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARVHFL 756 (836)
Q Consensus 679 ~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~~~~ 756 (836)
+.++.++|.+|...|++++|+..|+++++++|. .++.++|.++..
T Consensus 77 ---------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 77 ---------------------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp ---------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 356788888888889999999888888887653 567777777765
Q ss_pred cC
Q 003249 757 KN 758 (836)
Q Consensus 757 ~g 758 (836)
.|
T Consensus 124 ~g 125 (125)
T 1na0_A 124 QG 125 (125)
T ss_dssp HC
T ss_pred cc
Confidence 44
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.38 E-value=2.8e-13 Score=148.81 Aligned_cols=95 Identities=9% Similarity=-0.004 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCc--hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHc----
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKIRH--TRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEY---- 787 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l~~--~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~---- 787 (836)
+|+|+|.+|..+|+|++|+.+|++||+++| ..+++++|.++..+|++++|+..|.++++++|+++.++..++.+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 577777777777777777777777777655 35777777777777777777777777777777777777665433
Q ss_pred -cCHHHHHHHHHHhHhcCCCCc
Q 003249 788 -CDRELTRADLEMVTQLDPLRV 808 (836)
Q Consensus 788 -~~~~~A~~D~~~Ai~l~P~~~ 808 (836)
+..+.+...|.+++.++|+..
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCC
Confidence 456667777777777777654
No 188
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1e-11 Score=116.39 Aligned_cols=121 Identities=17% Similarity=0.082 Sum_probs=97.1
Q ss_pred HhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 472 TALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 472 i~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~----~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
+..+|.++..++.+|..+...|++++|+..|+++++++|+ ...+.++|.++..+|++++|+..|+++++++|++
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-- 98 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-- 98 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--
Confidence 4567888888999999999999999999999999999887 4567778888888888888888888888877765
Q ss_pred hhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003249 548 FEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSL 627 (836)
Q Consensus 548 ~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~ 627 (836)
+.+|+++|.++..+|++++|+..|
T Consensus 99 --------------------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~ 122 (148)
T 2dba_A 99 --------------------------------------------------------VKALYRRSQALEKLGRLDQAVLDL 122 (148)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 234566777778888888888888
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHh
Q 003249 628 QLARQHAASDHERLVYEGWILYD 650 (836)
Q Consensus 628 ~~Al~l~P~~~eal~~~G~il~~ 650 (836)
+++++++|++.+++..++.+...
T Consensus 123 ~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 123 QRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHcCCCcHHHHHHHHHHHhh
Confidence 88888888888888777766543
No 189
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.38 E-value=1.9e-12 Score=114.97 Aligned_cols=106 Identities=13% Similarity=0.059 Sum_probs=95.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--hHHHHH
Q 003249 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRS--FEAFFL 676 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~--~~a~~~ 676 (836)
++|+++..++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+ .
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~----- 75 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN----- 75 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-----
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-----
Confidence 368889999999999999999999999999999999999999999999999999999999999999988765 3
Q ss_pred HHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCch
Q 003249 677 KAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDC-GQLDLAADCYSNALKIRHT 744 (836)
Q Consensus 677 ~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~-g~~deAi~~y~kAL~l~~~ 744 (836)
..++.++|.+|..+ |++++|+++++++++..|.
T Consensus 76 -----------------------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 76 -----------------------------------KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp -----------------------------------HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred -----------------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 35789999999999 9999999999999987654
No 190
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.37 E-value=8.5e-12 Score=111.61 Aligned_cols=111 Identities=11% Similarity=0.134 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 003249 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~ 682 (836)
.+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++++.|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----------- 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-----------
Confidence 356788899999999999999999999999999999999999999999999999999999999876654
Q ss_pred ccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch--hHHhhHHHH
Q 003249 683 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT--RAHQGLARV 753 (836)
Q Consensus 683 ~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~A~~~la~~ 753 (836)
+.++.++|.+|...|++++|+..|+++++++|. .++..++.+
T Consensus 72 -----------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 72 -----------------------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp -----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 357888999999999999999999999988664 455555554
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=5.5e-12 Score=141.05 Aligned_cols=210 Identities=8% Similarity=-0.023 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003249 481 PYMYRASSLMTKQNVEAALAEINRILGFKLAL------------------ECLELRFCFFLALEDYQAALCDVQAILTLS 542 (836)
Q Consensus 481 ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~------------------~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~ 542 (836)
+-...|..+...|++++|+..|.++++..|+. .++.++|.+|..+|++++|++.|++++++.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666531 135556667777777777777777776666
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHH------hcCCCCHHHHHHHHHHHHH
Q 003249 543 PDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQML------ESDAPKGVLYFRQSLLLLR 616 (836)
Q Consensus 543 P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al------~~~P~~~~~~~~~gl~l~~ 616 (836)
+..............++.++...+.++.+ +..+.+++ ...+..+.++.++|.++..
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a------------------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQ------------------IFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ 147 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHH------------------HHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHH------------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 65543322222222333333333333333 22222222 2334557789999999999
Q ss_pred cCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCC
Q 003249 617 LNCPEAAMRSLQLARQH------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSC 690 (836)
Q Consensus 617 l~~~~eAl~~~~~Al~l------~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~ 690 (836)
.|++++|+..+++++.. .|...+++...|.++..+|++++|...|++++.+.+...
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------------------ 209 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY------------------ 209 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC------------------
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC------------------
Confidence 99999999999999976 566688999999999999999999999999997654320
Q ss_pred hhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 691 SSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 691 ~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+ ....+..+.+.|.++...|+|++|..+|.++++.
T Consensus 210 -------------~~--~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 210 -------------CP--TQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp -------------CC--HHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred -------------Cc--hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 00 0012467899999999999999999999999874
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.35 E-value=5.6e-12 Score=118.89 Aligned_cols=140 Identities=17% Similarity=0.068 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHH
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH------ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 677 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~------eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~ 677 (836)
+.++..+|.++...|++++|+..+++++++.|... .++..+|.++..+|++++|+..|++++++.+...
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----- 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK----- 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----
Confidence 56889999999999999999999999999876543 4899999999999999999999999998654321
Q ss_pred HHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC-----c---hhHHhh
Q 003249 678 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR-----H---TRAHQG 749 (836)
Q Consensus 678 a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~-----~---~~A~~~ 749 (836)
+....+.++.++|.+|...|++++|++.|++|+++. + ..++.+
T Consensus 84 -----------------------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 84 -----------------------------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------------------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 011124689999999999999999999999999862 1 257899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 003249 750 LARVHFLKNNKTTAYEEMTKLIKKARNN 777 (836)
Q Consensus 750 la~~~~~~g~~~~A~~~~~kaie~~p~~ 777 (836)
+|.++...|++++|++.+.+++++....
T Consensus 135 la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 135 LGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887654
No 193
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.34 E-value=6.7e-12 Score=124.53 Aligned_cols=155 Identities=12% Similarity=-0.027 Sum_probs=123.6
Q ss_pred hhHHHHHHHHHhcCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-hHHHHHHHHHHHhcCCHHHHHH
Q 003249 462 DKRWEDLDKATALDP-TLSYPYMYRASSLMTKQNVEAALAEINRILGF------KLA-LECLELRFCFFLALEDYQAALC 533 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP-~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l------~P~-~~~~~~rg~~~~~lg~~~~Ai~ 533 (836)
++|...++.... +| ..+.++..+|.++...|++++|+..|++++++ .|. ..++.++|.++..+|++++|+.
T Consensus 9 ~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 87 (203)
T 3gw4_A 9 ALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARR 87 (203)
T ss_dssp HHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455553333333 44 67889999999999999999999999999994 332 3567889999999999999999
Q ss_pred HHHHHHhh---CCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHH
Q 003249 534 DVQAILTL---SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQ 610 (836)
Q Consensus 534 d~~~al~l---~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~ 610 (836)
.|++++++ .|+... ..+.++.++
T Consensus 88 ~~~~al~~~~~~~~~~~------------------------------------------------------~~~~~~~~l 113 (203)
T 3gw4_A 88 CFLEERELLASLPEDPL------------------------------------------------------AASANAYEV 113 (203)
T ss_dssp HHHHHHHHHHHSCCCHH------------------------------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHH------------------------------------------------------HHHHHHHHH
Confidence 99999998 332210 113567889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 611 SLLLLRLNCPEAAMRSLQLARQHAA--SD----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 611 gl~l~~l~~~~eAl~~~~~Al~l~P--~~----~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
|.++..+|++++|++.+++++++.+ .+ +.++.++|.++..+|++++|+..+++++++.+..
T Consensus 114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999997643 22 3356899999999999999999999999886544
No 194
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=9e-12 Score=116.81 Aligned_cols=72 Identities=10% Similarity=-0.031 Sum_probs=43.1
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
.+|.++..++.+|..+...|++++|+..|+++++++|++ +.+++++|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 345556666666666666666666666666666666655 555666666666666666666666666555443
No 195
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.33 E-value=2.7e-11 Score=108.27 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHH
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQL 557 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~ 557 (836)
+..|+.+|.++...|++++|+..|+++++.+|+ +..+..+|.++..+|++++|+..|+++++++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW------------ 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc------------
Confidence 456667777777777777777777777777774 4556666777777777777777776666665544
Q ss_pred HHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003249 558 HMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD 637 (836)
Q Consensus 558 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~ 637 (836)
+.+++++|.++..+|++++|+..++++++++|++
T Consensus 72 ----------------------------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 72 ----------------------------------------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 2344555666666677777777777777777777
Q ss_pred HHHHHHHHHHH
Q 003249 638 HERLVYEGWIL 648 (836)
Q Consensus 638 ~eal~~~G~il 648 (836)
+.++..+|.+.
T Consensus 106 ~~~~~~l~~~~ 116 (118)
T 1elw_A 106 PQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 66666666553
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.32 E-value=1.1e-11 Score=116.81 Aligned_cols=142 Identities=16% Similarity=0.135 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHH
Q 003249 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVI 593 (836)
Q Consensus 514 ~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~ 593 (836)
++..+|.++...|++++|+..|++++++.|+....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------------------------------------- 45 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------------------------------- 45 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------------------------------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---------------------------------------------
Confidence 45667777888888888888888887775432110
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 594 YQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 594 ~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~------~eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
+..+.++.++|.++...|++++|+..+++++++.+.. +.++.++|.++..+|++++|+..+++++++
T Consensus 46 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 46 -------AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 0013456777888888888888888888888776553 678999999999999999999999999976
Q ss_pred ccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 668 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 668 ~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+... +....+.++.++|.+|..+|++++|++.|++|+++
T Consensus 119 ~~~~~----------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 119 AQELK----------------------------------DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHTT----------------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcc----------------------------------chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 43220 01112568999999999999999999999999986
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.31 E-value=1.2e-11 Score=137.80 Aligned_cols=123 Identities=17% Similarity=0.156 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRILG----------------FKLA-LECLELRFCFFLALEDYQAALCDVQAILTL 541 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai~----------------l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l 541 (836)
+..|..+|..+...|++++|+..|++||+ ++|. ..++.++|.+|..+|+|++|+.+|++||++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999 6775 477889999999999999999999999998
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 003249 542 SPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPE 621 (836)
Q Consensus 542 ~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~ 621 (836)
+|++ +.+|+++|.++..+|+++
T Consensus 303 ~p~~----------------------------------------------------------~~a~~~lg~~~~~~g~~~ 324 (370)
T 1ihg_A 303 DPSN----------------------------------------------------------TKALYRRAQGWQGLKEYD 324 (370)
T ss_dssp CTTC----------------------------------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred Cchh----------------------------------------------------------HHHHHHHHHHHHHccCHH
Confidence 8765 456788899999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003249 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLR 659 (836)
Q Consensus 622 eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~ 659 (836)
+|+..|++|++++|++++++..++.++..+|++++|..
T Consensus 325 eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 325 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988854
No 198
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=7e-09 Score=123.93 Aligned_cols=213 Identities=9% Similarity=-0.051 Sum_probs=157.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAM-RSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 590 L~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl-~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
...|.++|...|..+..|+.-+..+...|+.++|. ..|.+|+...|.+...|...+......|++++|-+.|++++..-
T Consensus 329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999997 99999999999999999999999999999999999999999752
Q ss_pred -----------cc-----------hHHHHHHHHHhhccccCCCChhHHHHHHHHHhcC-CccccchHHHHHHHHHHHHhc
Q 003249 669 -----------RS-----------FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKC-PSDRLRKGQALNNLGSVYVDC 725 (836)
Q Consensus 669 -----------p~-----------~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~-~~~~~~~~~a~~nlG~~y~~~ 725 (836)
|. +.-.+.....+... .+....+.+++++|++. +... ...|...+.+-...
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR---~~~l~~AR~vf~~A~~~~~~~~---~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR---IQGLAASRKIFGKCRRLKKLVT---PDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHTGGGSC---THHHHHHHHHHHTT
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHh
Confidence 32 11011111111111 12345667788888876 3222 35566666666666
Q ss_pred C-CHHHHHHHHHHHHcCCch--hHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCC---CHHHHHH--H--HHccCHHHHHH
Q 003249 726 G-QLDLAADCYSNALKIRHT--RAHQGLARVHFLKNNKTTAYEEMTKLIKKARN---NASAYEK--R--SEYCDRELTRA 795 (836)
Q Consensus 726 g-~~deAi~~y~kAL~l~~~--~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~---~a~Ay~~--r--~~~~~~~~A~~ 795 (836)
| +++.|...|+++|+.-|. ......+......|+.+.|-+-|+++++..|+ ....|.. + ..+|+.+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5 489999999999986332 33345555666778999999999999988773 3333322 2 45788889999
Q ss_pred HHHHhHhcCCCCc
Q 003249 796 DLEMVTQLDPLRV 808 (836)
Q Consensus 796 D~~~Ai~l~P~~~ 808 (836)
-++++.+..|+..
T Consensus 563 v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 563 LEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHSTTCC
T ss_pred HHHHHHHhCCCCc
Confidence 9999999999753
No 199
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.30 E-value=2.8e-11 Score=111.29 Aligned_cols=65 Identities=12% Similarity=0.055 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 481 PYMYRASSLMTKQNVEAALAEINRILGFKLA-L---ECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 481 ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~---~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
+++.+|.++...|++++|+..|+++++.+|+ + .+++.+|.++..+|++++|+..|+++++++|++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 3455666666666666666666666666664 2 355556666666666666666666666665554
No 200
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.30 E-value=2e-11 Score=108.21 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcccc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDT-SHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~--~~eal~~~G~il~~~-G~~eeAl~~~~~Ai~l~p~ 670 (836)
+++++|.++..+|++++|+..|+++++++|+ ++++++.+|.++..+ |++++|++.+++++...|+
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 3445555566666666666666666666666 666777777777777 7777777777777776664
No 201
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.30 E-value=1.2e-11 Score=112.85 Aligned_cols=122 Identities=11% Similarity=0.136 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 003249 602 PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (836)
Q Consensus 602 ~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL 681 (836)
..+..++.+|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++++.|+..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--------- 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR--------- 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST---------
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc---------
Confidence 34678999999999999999999999999999999999999999999999999999999999998876431
Q ss_pred hccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCch-hHHhhHHHHHHh
Q 003249 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHT-RAHQGLARVHFL 756 (836)
Q Consensus 682 ~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~-~A~~~la~~~~~ 756 (836)
+.....+.++.++|.+|...|++++|+..|++++++.|. .....++.+...
T Consensus 73 ------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 73 ------------------------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKI 124 (131)
T ss_dssp ------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ------------------------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 001111468999999999999999999999999998653 455555555443
No 202
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.30 E-value=6.7e-12 Score=139.72 Aligned_cols=117 Identities=11% Similarity=-0.004 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
..+..+|..+...|+|++|+..|++|+++.|.... ...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~------------------------------------------~~~ 261 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA------------------------------------------AAE 261 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH------------------------------------------HSC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcc------------------------------------------ccC
Confidence 34677899999999999999999999998654310 001
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
..+..+.+|.++.+|+++|.++.++|++++|+..+++|++++|+++.+|+++|.++..+|++++|++.|++|++++|++
T Consensus 262 ~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 262 DADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 2234556788899999999999999999999999999999999999999999999999999999999999999998876
No 203
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.27 E-value=6.2e-11 Score=108.96 Aligned_cols=105 Identities=10% Similarity=-0.044 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
++++.+|..+...|++++|+..|+++++.+|++..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------------------------------------- 37 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY--------------------------------------------- 37 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT---------------------------------------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc---------------------------------------------
Confidence 34678899999999999999999999999998631
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p 669 (836)
.+.+++.+|.++..+|++++|+..|+++++.+|++ +++++.+|.++..+|++++|+..|+++++..|
T Consensus 38 ----------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 38 ----------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp ----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 13567889999999999999999999999999999 99999999999999999999999999999998
Q ss_pred chH
Q 003249 670 SFE 672 (836)
Q Consensus 670 ~~~ 672 (836)
+..
T Consensus 108 ~~~ 110 (129)
T 2xev_A 108 GSD 110 (129)
T ss_dssp TSH
T ss_pred CCh
Confidence 873
No 204
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.27 E-value=2.7e-11 Score=110.41 Aligned_cols=125 Identities=8% Similarity=-0.009 Sum_probs=104.7
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHH
Q 003249 476 PTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAA 554 (836)
Q Consensus 476 P~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~ 554 (836)
|..+..|+.+|.++...|++++|+..|+++++++|+ ..+++++|.++..+|++++|+..|+++++++|++...+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----- 75 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY----- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH-----
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH-----
Confidence 345678999999999999999999999999999996 67888999999999999999999999999987652110
Q ss_pred HHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003249 555 SQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (836)
Q Consensus 555 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~ 634 (836)
+..+.+++++|.++..+|++++|+..|+++++++
T Consensus 76 ----------------------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 76 ----------------------------------------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 0014567888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 003249 635 ASDHERLVYEGWILYDTS 652 (836)
Q Consensus 635 P~~~eal~~~G~il~~~G 652 (836)
| +++.+..++.+...++
T Consensus 110 ~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 110 R-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp C-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 8 6888888887766544
No 205
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=1.3e-10 Score=125.23 Aligned_cols=243 Identities=10% Similarity=0.025 Sum_probs=177.1
Q ss_pred hhccchHHHHHHHHHHHhc-cchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHHHHHHHH
Q 003249 394 LLRKEYDEAEHLFEAAVNA-GHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKAT 472 (836)
Q Consensus 394 ~~~g~y~eAi~~f~~Al~l-~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d~~kAi 472 (836)
+-.|.|..++....+ +.. ++......+.|.+..+|++... . ..+++..+......|.. ..|+..+++.+
T Consensus 24 fy~G~yq~~i~e~~~-~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~-~~~~~~~a~~~la~~~~-~~a~~~l~~l~ 93 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEK-FSKVTDNTLLFYKAKTLLALGQYQSQ-------D-PTSKLGKVLDLYVQFLD-TKNIEELENLL 93 (310)
T ss_dssp HTTTCHHHHTHHHHT-SSCCCCHHHHHHHHHHHHHTTCCCCC-------C-SSSTTHHHHHHHHHHHT-TTCCHHHHHTT
T ss_pred HHhhHHHHHHHHHHh-cCccchHHHHHHHHHHHHHcCCCccC-------C-CCCHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 457888888774322 111 2233455667778888875421 1 12223223322233322 33888899999
Q ss_pred hcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----
Q 003249 473 ALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKL--A-LECLELRFCFFLALEDYQAALCDVQAILTLSPD----- 544 (836)
Q Consensus 473 ~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P--~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~----- 544 (836)
+..+....++..+|.++...|++++|+..+.+.|+.+| + .+++...+.++..+|+.+.|.+.+++..+.+|+
T Consensus 94 ~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 94 KDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp TTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 88777778888999999999999999999999999998 4 466777889999999999999999999999994
Q ss_pred chhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHH
Q 003249 545 YRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAP--KGVLYFRQSLLLLRLNCPEA 622 (836)
Q Consensus 545 ~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~--~~~~~~~~gl~l~~l~~~~e 622 (836)
+.. . ...+..|..+....+ ....++..|.++.+..|+ .....++ ++..+|++++
T Consensus 174 d~~-l------------------~~Laea~v~l~~g~~--~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~e 229 (310)
T 3mv2_B 174 NEM-I------------------LNLAESYIKFATNKE--TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAE 229 (310)
T ss_dssp HHH-H------------------HHHHHHHHHHHHTCS--TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHH
T ss_pred hHH-H------------------HHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHH
Confidence 211 1 111233444333222 223468889998888886 4455555 8999999999
Q ss_pred HHHHHHHHHHc----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchH
Q 003249 623 AMRSLQLARQH----------AASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFE 672 (836)
Q Consensus 623 Al~~~~~Al~l----------~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~ 672 (836)
|.+.++.+++. +|++++++.|+..+.+.+|+ +|.+.++++.+++|+.+
T Consensus 230 Ae~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 230 AQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 99999988877 59999999999999999998 89999999999999874
No 206
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.25 E-value=2e-11 Score=119.41 Aligned_cols=102 Identities=21% Similarity=0.290 Sum_probs=87.1
Q ss_pred EEEEe-CCeEEehhHHHHhhcCHHHHHhhcC-CCC-cCCcceeEecCCCCCHHHHHHHHHhhccCc--------------
Q 003249 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG-SFM-ESLCEDIDLSENNISPSGLRIISDFSVTGS-------------- 246 (836)
Q Consensus 184 V~~~v-~~~~~~aHr~vLaa~S~yF~amf~~-~~~-Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~-------------- 246 (836)
|+|+. +|+.|++||.+ |++|+||++||.+ ++. |+....|.|+ +|+..+|+.|++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~--~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLP--NVNAAILKKVIQWCTHHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECT--TSCHHHHHHHHHHHHHTTTCCC----------
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCC--CccHHHHHHHHHHHHHcCcCCCCccccccccc
Confidence 77765 89999999999 9999999999998 888 7888899999 799999999999999998
Q ss_pred ------------CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhC--CHHHHH
Q 003249 247 ------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAV 289 (836)
Q Consensus 247 ------------l~~~~~~~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~--~~~~a~ 289 (836)
+. ++.+++.+|+.||+++.+..|.+.|...++..+. ++++..
T Consensus 80 ~~~~i~~wD~~F~~-id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir 135 (159)
T 2ast_A 80 RTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIR 135 (159)
T ss_dssp -CCCCCHHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred chhhhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 77 8999999999999999999999999999887774 344433
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.24 E-value=4e-10 Score=121.43 Aligned_cols=187 Identities=13% Similarity=0.018 Sum_probs=147.2
Q ss_pred HHHHHHHHHhcC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHh
Q 003249 498 ALAEINRILGFK-LALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQ 576 (836)
Q Consensus 498 Ai~~~~kai~l~-P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~ 576 (836)
|++.|++.++.. +++.++...|.++...|++++|++.+.+.|..+|+.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~------------------------------- 133 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAE------------------------------- 133 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-------------------------------
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-------------------------------
Confidence 889999988875 456666778999999999999999999998887721
Q ss_pred hhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHh
Q 003249 577 LYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAA------SDHERLVYEGWILYD 650 (836)
Q Consensus 577 ~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P------~~~eal~~~G~il~~ 650 (836)
++.+++...+.++++.|+++.|.+.+++..+.+| +..-.....||+...
T Consensus 134 -------------------------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~ 188 (310)
T 3mv2_B 134 -------------------------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFA 188 (310)
T ss_dssp -------------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHH
Confidence 1234455566788999999999999999999999 333345556888888
Q ss_pred cC--CHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCH
Q 003249 651 TS--HCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQL 728 (836)
Q Consensus 651 ~G--~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~ 728 (836)
+| ++++|...|+++.+..|++. ....+.| ++..+|++
T Consensus 189 ~g~~~~q~A~~~f~El~~~~p~~~--------------------------------------~~~lLln---~~~~~g~~ 227 (310)
T 3mv2_B 189 TNKETATSNFYYYEELSQTFPTWK--------------------------------------TQLGLLN---LHLQQRNI 227 (310)
T ss_dssp HTCSTTTHHHHHHHHHHTTSCSHH--------------------------------------HHHHHHH---HHHHHTCH
T ss_pred hCCccHHHHHHHHHHHHHhCCCcc--------------------------------------cHHHHHH---HHHHcCCH
Confidence 88 99999999999876655421 0123444 89999999
Q ss_pred HHHHHHHHHHHcC------------CchhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHH
Q 003249 729 DLAADCYSNALKI------------RHTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEK 783 (836)
Q Consensus 729 deAi~~y~kAL~l------------~~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~ 783 (836)
++|.+.+++.+++ ++..+..|+..+....|+ +|-+.++++.+.+|+++....-
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 9999999988774 345677888888888997 8889999999999999887644
No 208
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.23 E-value=1.4e-11 Score=112.84 Aligned_cols=32 Identities=16% Similarity=0.107 Sum_probs=13.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 003249 609 RQSLLLLRLNCPEAAMRSLQLARQHAASDHER 640 (836)
Q Consensus 609 ~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~ea 640 (836)
++|.++..+|++++|+..++++++.+|++++.
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 33334444444444444444444444444433
No 209
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.21 E-value=7.3e-11 Score=131.86 Aligned_cols=188 Identities=11% Similarity=-0.006 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDH-----------------ERLVYEGWILYDTSHCEEGLRKAEESIQM 667 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~-----------------eal~~~G~il~~~G~~eeAl~~~~~Ai~l 667 (836)
.....+|..+.+.|++++|++.|.++++..|+.. .++.++|.+|.++|++++|++.|++++.+
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3466778888999999999999999999999864 36899999999999999999999999987
Q ss_pred ccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC-----
Q 003249 668 KRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR----- 742 (836)
Q Consensus 668 ~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~----- 742 (836)
.+...-. .....+.+++|.++...|++++|+..|++++++.
T Consensus 85 ~~~~~~~----------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 130 (434)
T 4b4t_Q 85 MMQFAKS----------------------------------KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR 130 (434)
T ss_dssp HHTSCHH----------------------------------HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHccch----------------------------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 5543100 0012356677777777778888888887777651
Q ss_pred ---chhHHhhHHHHHHhcCCHHHHHHHHHHHHHh------cCCCHHHHHHHH----HccCHHHHHHHHHHhHhcCCCCcc
Q 003249 743 ---HTRAHQGLARVHFLKNNKTTAYEEMTKLIKK------ARNNASAYEKRS----EYCDRELTRADLEMVTQLDPLRVY 809 (836)
Q Consensus 743 ---~~~A~~~la~~~~~~g~~~~A~~~~~kaie~------~p~~a~Ay~~r~----~~~~~~~A~~D~~~Ai~l~P~~~~ 809 (836)
....+.++|.++...|++++|+..+.+++.. .|..+.+|...+ ..|++++|+.-|++|+.+.|....
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 210 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC 210 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence 1246677777888888888887777777754 233456666664 347778888888888777777777
Q ss_pred cchhhHHHHHHHhhhhh
Q 003249 810 PYRYRAAGLIVFLNLHI 826 (836)
Q Consensus 810 ~y~~r~~~~~~~~~~~~ 826 (836)
+....|.++...|..|.
T Consensus 211 ~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 211 PTQTVAELDLMSGILHC 227 (434)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHH
Confidence 77777777777776664
No 210
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.17 E-value=2.6e-11 Score=110.97 Aligned_cols=89 Identities=15% Similarity=0.009 Sum_probs=82.4
Q ss_pred CChhhHHHHHHHHHhc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 003249 459 CEGDKRWEDLDKATAL---DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCD 534 (836)
Q Consensus 459 ~~~~eAi~d~~kAi~l---dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d 534 (836)
+..++|+..|++|+++ +|+++.+|+++|.++..+|++++|+..|+++++++|+ +.+++++|.++..+|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 3448999999999999 6999999999999999999999999999999999997 68888999999999999999999
Q ss_pred HHHHHhhCCCchh
Q 003249 535 VQAILTLSPDYRM 547 (836)
Q Consensus 535 ~~~al~l~P~~~~ 547 (836)
|+++++++|++..
T Consensus 84 ~~~al~~~p~~~~ 96 (117)
T 3k9i_A 84 LLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHCCCHH
T ss_pred HHHHHHhCCCcHH
Confidence 9999999999864
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.13 E-value=2.6e-10 Score=103.51 Aligned_cols=86 Identities=13% Similarity=-0.004 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
++|+..|+++++++|+++.+|+++|.++...|++++|+..|+++++++|+ ..+++++|.+|..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999997 57889999999999999999999999999
Q ss_pred hCCCchh
Q 003249 541 LSPDYRM 547 (836)
Q Consensus 541 l~P~~~~ 547 (836)
++|+...
T Consensus 82 ~~~~~~~ 88 (115)
T 2kat_A 82 AAQSRGD 88 (115)
T ss_dssp HHHHHTC
T ss_pred hcccccc
Confidence 9997643
No 212
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.12 E-value=3.5e-11 Score=107.37 Aligned_cols=101 Identities=7% Similarity=0.026 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 003249 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~ 682 (836)
++..|+++|.++...|++++|++.|+++++++|+++.+++++|.++..+|++++|++.|+++++++|++.....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI------ 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH------
Confidence 46789999999999999999999999999999999999999999999999999999999999999887621000
Q ss_pred ccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 683 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSN 737 (836)
Q Consensus 683 ~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~k 737 (836)
.+.++.++|.++..+|++++|+..|++
T Consensus 77 ----------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 77 ----------------------------RSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred ----------------------------HHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 135788889999988888887776654
No 213
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.10 E-value=1.6e-10 Score=103.39 Aligned_cols=80 Identities=24% Similarity=0.357 Sum_probs=64.4
Q ss_pred EEEEe-CCeEEehhHHHHhhcCHHHHHhhcC--CCCcCCcceeEecCCCCCHHHHHHHHHhhc-----c---CcCC--CC
Q 003249 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSV-----T---GSLN--GV 250 (836)
Q Consensus 184 V~~~v-~~~~~~aHr~vLaa~S~yF~amf~~--~~~Es~~~~I~l~~~~is~~~~~~ll~f~Y-----t---g~l~--~~ 250 (836)
|+++- +|++|++||.+ |++|+||++||.+ ++.|+....|.|+ +|++.+|+.+++|+| + +.++ .+
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~--~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i 80 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPI 80 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECT--TSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCC
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECC--CCCHHHHHHHHHHHHHhcccCCCcCCCCcCcC
Confidence 56655 78999999999 9999999999987 7889889999999 799999999999999 5 5554 27
Q ss_pred CHHHHHHHHHHHHHHh
Q 003249 251 TPNLLLEILIFANKFC 266 (836)
Q Consensus 251 ~~~~v~~lL~aA~~~c 266 (836)
+.+++.+|+.||+++.
T Consensus 81 ~~~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 81 APEIALELLMAANFLD 96 (97)
T ss_dssp CGGGHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhhC
Confidence 7999999999999864
No 214
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.1e-10 Score=104.09 Aligned_cols=57 Identities=9% Similarity=0.017 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASD------HERLVYEGWILYDTSHCEEGLRKAE 662 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~------~eal~~~G~il~~~G~~eeAl~~~~ 662 (836)
+|+++|.++..+|++++|++.|+++++++|++ +.+++.+|.++..+|++++|+..++
T Consensus 40 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 40 GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 34455555555555555555566666666655 6677777777777777777766554
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.04 E-value=2.4e-07 Score=110.60 Aligned_cols=336 Identities=10% Similarity=0.001 Sum_probs=212.1
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CChHHHHHHHHHHHhcCCH----HHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFK---LALECLELRFCFFLALEDY----QAA 531 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~---~~eAi~~~~kai~l~---P~~~~~~~rg~~~~~lg~~----~~A 531 (836)
+.+...|++++...|.....|..-...-...+. ++.+...|++++..- |+.+.|..-.......++. ++|
T Consensus 83 ~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~ 162 (679)
T 4e6h_A 83 KQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEA 162 (679)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchh
Confidence 556667899999999999999988888888888 999999999999998 7777665433323333332 333
Q ss_pred ----HHHHHHHHhh----CCCchhhhhhHHHHHHHHH-----HHHHhhhHhHHHHHHhhhhccCcc--------------
Q 003249 532 ----LCDVQAILTL----SPDYRMFEGRVAASQLHML-----VREHIDNWTIADCWLQLYDRWSSV-------------- 584 (836)
Q Consensus 532 ----i~d~~~al~l----~P~~~~~~~~~~~~~~~~~-----l~~~~~~~~~a~~~~~~~~~~~~~-------------- 584 (836)
.+.|++|+.. +|+....+... . .+... -.+..+..+++ ..+|++.-.+
T Consensus 163 r~~vr~~FErAl~~vG~~d~~s~~iW~~Y-i-~f~~~~~~~~~~eeq~~~~~~---R~iy~raL~iP~~~~~~~w~~Y~~ 237 (679)
T 4e6h_A 163 RNIVIQAFQVVVDKCAIFEPKSIQFWNEY-L-HFLEHWKPVNKFEEQQRVQYI---RKLYKTLLCQPMDCLESMWQRYTQ 237 (679)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHH-H-HHHHTCCCCSHHHHHHHHHHH---HHHHHHHTTSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccchHHHHHH-H-HHHHhccccCcHHHHhHHHHH---HHHHHHHHhCccHHHHHHHHHHHH
Confidence 4788888874 66553322110 0 00000 00011111111 1111111110
Q ss_pred -----cccch---H----HHHHH-------------HHhc-CCCC-------------------HHHHHHHHHHHHHcCC
Q 003249 585 -----DDIGS---L----SVIYQ-------------MLES-DAPK-------------------GVLYFRQSLLLLRLNC 619 (836)
Q Consensus 585 -----~~~~a---L----~~~~~-------------al~~-~P~~-------------------~~~~~~~gl~l~~l~~ 619 (836)
....+ + ..|.+ .|.. -|.. ...|. .-+.+.+.+.
T Consensus 238 fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~-~yi~fEk~~~ 316 (679)
T 4e6h_A 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWL-EWIRWESDNK 316 (679)
T ss_dssp HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHH-HHHHHHHTCT
T ss_pred HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHH-HHHHHHHhCC
Confidence 00000 0 01110 1111 0110 12222 2222233321
Q ss_pred --------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcccchHHHHHHHHHhhccccCCCC
Q 003249 620 --------PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGL-RKAEESIQMKRSFEAFFLKAYALADSSQDSSC 690 (836)
Q Consensus 620 --------~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl-~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~ 690 (836)
.+.....|++++...|.+++.|+..+..+...|+.++|+ +.|++|+...|.....+.....+... .+.
T Consensus 317 ~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~---~~~ 393 (679)
T 4e6h_A 317 LELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL---NTK 393 (679)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH---TTC
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hCC
Confidence 234567899999999999999999999999999999998 99999999989876544332222222 134
Q ss_pred hhHHHHHHHHHhcCCcc--------cc-----------chHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-Cc--hhHHh
Q 003249 691 SSTVVSLLEDALKCPSD--------RL-----------RKGQALNNLGSVYVDCGQLDLAADCYSNALKI-RH--TRAHQ 748 (836)
Q Consensus 691 ~~~~i~~l~~Al~~~~~--------~~-----------~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l-~~--~~A~~ 748 (836)
.+.+-.+|+++++..+. .+ ....+|..........|..+.|...|.+|++. .+ ...+.
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 56677888888875311 01 12357888888888889999999999999987 32 24455
Q ss_pred hHHHHHHhcC-CHHHHHHHHHHHHHhcCCCHHHHHHH----HHccCHHHHHHHHHHhHhcCCC
Q 003249 749 GLARVHFLKN-NKTTAYEEMTKLIKKARNNASAYEKR----SEYCDRELTRADLEMVTQLDPL 806 (836)
Q Consensus 749 ~la~~~~~~g-~~~~A~~~~~kaie~~p~~a~Ay~~r----~~~~~~~~A~~D~~~Ai~l~P~ 806 (836)
..|.+....| +.+.|..-|.++++..|+++.-+..- ...|+.+.|.+.|++|+...|.
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 5566666655 48999999999999999998766433 3468999999999999999985
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.02 E-value=5.4e-09 Score=114.67 Aligned_cols=148 Identities=9% Similarity=0.025 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHH
Q 003249 515 LELRFCFFLALE---DYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLS 591 (836)
Q Consensus 515 ~~~rg~~~~~lg---~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~ 591 (836)
++.||..+...+ ++.+|+..|++|++++|+|+.++..++..+....- .+.+... ....+ . .++.
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~---~~~~~~~-~~~~l-~--------~a~~ 265 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHS---QHPLDEK-QLAAL-N--------TEID 265 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH---HSCCCHH-HHHHH-H--------HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc---cCCCchh-hHHHH-H--------HHHH
Confidence 445676665543 45788888888888888887766655543331110 0000000 00000 0 0111
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
. -.++..+|.++.+|...++.+...|++++|++.+++|+.++|+ +.+|..+|+++.-.|++++|++.|++|+.++|..
T Consensus 266 a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 266 N-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp H-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred H-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1 1345778999999999999999899999999999999999975 7899999999999999999999999999999999
Q ss_pred HHHHHH
Q 003249 672 EAFFLK 677 (836)
Q Consensus 672 ~a~~~~ 677 (836)
+.+++-
T Consensus 344 ~t~~~~ 349 (372)
T 3ly7_A 344 NTLYWI 349 (372)
T ss_dssp HHHHHH
T ss_pred ChHHHH
Confidence 766554
No 217
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.02 E-value=1.1e-09 Score=99.26 Aligned_cols=83 Identities=14% Similarity=0.055 Sum_probs=79.9
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 589 aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
++..+.++++.+|+++.+|+++|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cch
Q 003249 669 RSF 671 (836)
Q Consensus 669 p~~ 671 (836)
|..
T Consensus 84 ~~~ 86 (115)
T 2kat_A 84 QSR 86 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 764
No 218
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.02 E-value=1.4e-09 Score=93.23 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 601 P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
|+.+.+++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999988766
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.97 E-value=1.2e-09 Score=97.21 Aligned_cols=73 Identities=8% Similarity=0.058 Sum_probs=68.1
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+|+++.+|+++|.++...|++++|+..|+++++++|+++.+|+++|.++..+|++++|++.|++++++.|..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999987654
No 220
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.93 E-value=2.9e-09 Score=94.79 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=67.4
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 474 ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
.+|+++.+|+++|.++..+|++++|+..|+++++++|+ +.+++++|.+|..+|++++|+..|++++++.|+...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 48999999999999999999999999999999999997 688999999999999999999999999999887643
No 221
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.91 E-value=5.4e-09 Score=120.37 Aligned_cols=134 Identities=11% Similarity=-0.005 Sum_probs=108.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHH
Q 003249 609 RQSLLLLRLNCPEAAMRSLQLARQH-----AAS---DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYA 680 (836)
Q Consensus 609 ~~gl~l~~l~~~~eAl~~~~~Al~l-----~P~---~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~a 680 (836)
..+..+..+|+|++|+..+++++++ .|+ -+.++.++|.+|..+|+|++|+..|+++|++....
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~--------- 384 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL--------- 384 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---------
Confidence 3444567899999999999999974 344 45679999999999999999999999999763211
Q ss_pred hhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-------Cch---hHHhhH
Q 003249 681 LADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI-------RHT---RAHQGL 750 (836)
Q Consensus 681 L~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l-------~~~---~A~~~l 750 (836)
+.+++ +..+..++|+|.+|..+|++++|+..|++|++| +|. ....++
T Consensus 385 -----lG~~H------------------p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l 441 (490)
T 3n71_A 385 -----YHHNN------------------AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR 441 (490)
T ss_dssp -----SCTTC------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred -----cCCCC------------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 22333 334678999999999999999999999999987 232 456789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhc
Q 003249 751 ARVHFLKNNKTTAYEEMTKLIKKA 774 (836)
Q Consensus 751 a~~~~~~g~~~~A~~~~~kaie~~ 774 (836)
+.++..+|++++|...|.++-|-+
T Consensus 442 ~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 442 MQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887644
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.88 E-value=2.3e-09 Score=94.12 Aligned_cols=91 Identities=7% Similarity=-0.124 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCch--h-HHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHccCHH
Q 003249 715 LNNLGSVYVDCGQLDLAADCYSNALKIRHT--R-AHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYEKRSEYCDRE 791 (836)
Q Consensus 715 ~~nlG~~y~~~g~~deAi~~y~kAL~l~~~--~-A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~~r~~~~~~~ 791 (836)
..++|.++...|++++|+..|+++++++|. . ++.++|.++...|++++|++.|.++++++|+++.++.+ +..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----~~~~ 78 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----KMVM 78 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH----HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH----HHHH
Confidence 357899999999999999999999998764 6 89999999999999999999999999999999999866 4568
Q ss_pred HHHHHHHHhHhcCCCCcc
Q 003249 792 LTRADLEMVTQLDPLRVY 809 (836)
Q Consensus 792 ~A~~D~~~Ai~l~P~~~~ 809 (836)
+|+..|++++.++|..+.
T Consensus 79 ~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 79 DILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHhccCccccc
Confidence 999999999999998764
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.87 E-value=2e-09 Score=94.59 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-RLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 607 ~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e-al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+++|.++...|++++|+..|+++++.+|+++. +++++|.++..+|++++|++.|+++++++|++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 357888889999999999999999999999999 99999999999999999999999999988876
No 224
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.87 E-value=2e-08 Score=85.88 Aligned_cols=82 Identities=16% Similarity=0.078 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
..++.+|.++..+|++++|+..|+++++++|++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----------------------------------------------- 42 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----------------------------------------------- 42 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------------------------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----------------------------------------------
Confidence 456667777777777777777777777766654
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS 652 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G 652 (836)
+.+++++|.++...|++++|+..|+++++++|+++.++.++|.++..+|
T Consensus 43 -----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 43 -----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred -----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 2345566777777777888888888888888888888888888877654
No 225
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.87 E-value=3e-08 Score=94.02 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHH
Q 003249 618 NCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSL 697 (836)
Q Consensus 618 ~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~ 697 (836)
+++++|+..|+++.+..+..+. +|.++...+..++|+..|++|.+..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----------------------------- 55 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN----------------------------- 55 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT-----------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC-----------------------------
Confidence 3578899999999988755544 8999999999999999998888641
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCchhHHhhHHHHHHh----cCCHHHHHHHHHH
Q 003249 698 LEDALKCPSDRLRKGQALNNLGSVYVD----CGQLDLAADCYSNALKIRHTRAHQGLARVHFL----KNNKTTAYEEMTK 769 (836)
Q Consensus 698 l~~Al~~~~~~~~~~~a~~nlG~~y~~----~g~~deAi~~y~kAL~l~~~~A~~~la~~~~~----~g~~~~A~~~~~k 769 (836)
.+.+++++|.+|.. .+++++|+..|++|.+..+..+..++|.+|.. .+++++|+.-|++
T Consensus 56 -------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 56 -------------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp -------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 14688999999998 88999999999999999889999999999998 8899999999999
Q ss_pred HHHhcCCCHHHHHHH
Q 003249 770 LIKKARNNASAYEKR 784 (836)
Q Consensus 770 aie~~p~~a~Ay~~r 784 (836)
+.+. .++.|..+.
T Consensus 123 Aa~~--g~~~A~~~l 135 (138)
T 1klx_A 123 ACRL--GSEDACGIL 135 (138)
T ss_dssp HHHT--TCHHHHHHC
T ss_pred HHHC--CCHHHHHHH
Confidence 9887 556666554
No 226
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.77 E-value=1.2e-07 Score=104.05 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhhcc---chHHHHHHHHHHHhccchh--hHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhh
Q 003249 382 RLLAFHQLGCVRLLRK---EYDEAEHLFEAAVNAGHIY--SIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERS 456 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g---~y~eAi~~f~~Al~l~~~~--a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~ 456 (836)
.|..++..|..++..+ .+.+|+.+|++|++++|.+ ++.+++.++.... . ..+.........
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~-------~------~~~~~~~~~~~l- 260 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRH-------S------QHPLDEKQLAAL- 260 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------H------HSCCCHHHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-------c------cCCCchhhHHHH-
Confidence 3455677777776654 4699999999999998875 5666666654110 0 001000000000
Q ss_pred hcCChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 457 LYCEGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 457 ~~~~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
..|+.. ..++.++|.++.+|.-+|.++.-.|++++|+..+++|++++|+..+|..+|.++.-.|++++|++.|+
T Consensus 261 -----~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 261 -----NTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp -----HHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----HHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 223331 24568899999999999999999999999999999999999998778889999999999999999999
Q ss_pred HHHhhCCCchh
Q 003249 537 AILTLSPDYRM 547 (836)
Q Consensus 537 ~al~l~P~~~~ 547 (836)
+|+.++|....
T Consensus 335 ~AlrL~P~~~t 345 (372)
T 3ly7_A 335 TAFNLRPGANT 345 (372)
T ss_dssp HHHHHSCSHHH
T ss_pred HHHhcCCCcCh
Confidence 99999998753
No 227
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.75 E-value=3.1e-08 Score=113.98 Aligned_cols=140 Identities=10% Similarity=-0.046 Sum_probs=109.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHh
Q 003249 519 FCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLE 598 (836)
Q Consensus 519 g~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~ 598 (836)
+..+..+|+|++|+..|+++|++.-.-. | .
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~l---g-----------------------------------------------~ 345 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVF---A-----------------------------------------------D 345 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTB---C-----------------------------------------------T
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhc---C-----------------------------------------------C
Confidence 4456789999999999999998643210 0 1
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 599 SDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH-----AASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l-----~P~~---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
.+|.-+..+.++|.+|..+|+|++|+..+++++++ .|++ +..++++|.+|..+|++++|+..|++|++|...
T Consensus 346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 12444677899999999999999999999999975 4444 556899999999999999999999999986321
Q ss_pred hHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 671 FEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 671 ~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
.+.++++. ..+...+++.++.++|+|++|...|.+|.+
T Consensus 426 --------------~lG~~Hp~------------------~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 426 --------------THGPSHPI------------------TKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp --------------HTCTTSHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HhCCCChH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333332 256779999999999999999999999864
No 228
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.71 E-value=2e-07 Score=88.17 Aligned_cols=113 Identities=13% Similarity=0.121 Sum_probs=96.7
Q ss_pred cchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChhhHHHHHHHHHhcCC
Q 003249 397 KEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGDKRWEDLDKATALDP 476 (836)
Q Consensus 397 g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~eAi~d~~kAi~ldP 476 (836)
+++++|+++|++|.+.++..+. +|.+|...+..++|+.+ |++|.+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~------------------------------~~~Aa~~-- 54 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQY------------------------------LSKACEL-- 54 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHH------------------------------HHHHHHT--
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHH------------------------------HHHHHcC--
Confidence 5689999999999999888887 88888777665555444 6666665
Q ss_pred CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC
Q 003249 477 TLSYPYMYRASSLMT----KQNVEAALAEINRILGFKLALECLELRFCFFLA----LEDYQAALCDVQAILTLSPD 544 (836)
Q Consensus 477 ~~~~ay~~rg~~l~~----~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~----lg~~~~Ai~d~~~al~l~P~ 544 (836)
.++.+++++|.+|.. .+++++|+..|++|.+. -++.+.+++|.+|.. .+|+++|+..|++|.+....
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 688999999999999 89999999999999987 457888999999999 99999999999999998543
No 229
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=98.65 E-value=4.9e-08 Score=93.29 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=82.0
Q ss_pred EEEEe-CCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCc----------------
Q 003249 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS---------------- 246 (836)
Q Consensus 184 V~~~v-~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~---------------- 246 (836)
|+++. +|+.|.+||.+ |..|++|++||.+.- ...|.|+ +|+..+|+.+++|+|+..
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 76 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPLP--NVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 76 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEECT--TCCHHHHHHHHHHHHHHTTCC-------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceecC--CcCHHHHHHHHHHHHHhccCCCccccccccccch
Confidence 67776 88999999998 899999999998631 4579999 799999999999999877
Q ss_pred ----------CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhC
Q 003249 247 ----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (836)
Q Consensus 247 ----------l~~~~~~~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~ 283 (836)
+. ++.+++.+|+.||+++.+..|.+.|.+.++..+.
T Consensus 77 ~~i~~wD~~F~~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 122 (141)
T 1fs1_B 77 DDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 122 (141)
T ss_dssp ----HHHHHHTC-SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHh-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 66 8899999999999999999999999999888774
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.60 E-value=2.6e-05 Score=89.88 Aligned_cols=170 Identities=15% Similarity=0.054 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHH
Q 003249 622 AAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDA 701 (836)
Q Consensus 622 eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~A 701 (836)
.....|++++...|..++.|...+..+...|+.++|...|++|+.. |.....+. +++.. ...+ .....+.++
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~-~y~~~---~e~~---~~~~~l~~~ 268 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL-YYGLV---MDEE---AVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH-HHHHH---TTCT---HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH-HHHhh---cchh---HHHHHHHHH
Confidence 3455666666666666666666666666666777777777777766 65532221 11111 0000 011111111
Q ss_pred hcCCc-------cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHHhhH--HHHHHhcC-CHHHHHHHHHHHH
Q 003249 702 LKCPS-------DRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAHQGL--ARVHFLKN-NKTTAYEEMTKLI 771 (836)
Q Consensus 702 l~~~~-------~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~~~l--a~~~~~~g-~~~~A~~~~~kai 771 (836)
..... .......+|..........|..+.|...|.+| +..+...+..+ |.+-...| +.+.|..-|++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 10000 00112356666676666777788888888888 43222223223 44444444 5888888888888
Q ss_pred HhcCCCHHHHHHH----HHccCHHHHHHHHHHh
Q 003249 772 KKARNNASAYEKR----SEYCDRELTRADLEMV 800 (836)
Q Consensus 772 e~~p~~a~Ay~~r----~~~~~~~~A~~D~~~A 800 (836)
+.-|+.+.-+..- ...|+.+.|.+-|+++
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8777776443221 2234445555444444
No 231
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.52 E-value=1.5e-07 Score=106.74 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccC
Q 003249 616 RLNCPEAAMRSLQLARQH-----AASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQD 687 (836)
Q Consensus 616 ~l~~~~eAl~~~~~Al~l-----~P~~---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~ 687 (836)
..|+|++|+..+++++++ .|++ +.++.++|.+|..+|+|++|+..|+++|++... -+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~--------------~lG 375 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK--------------HYP 375 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------HSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH--------------HcC
Confidence 468899999999999974 4555 456899999999999999999999999976321 122
Q ss_pred CCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 688 SSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 688 ~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
++ .+..+..++|+|.+|..+|++++|+..|++|++|
T Consensus 376 ~~------------------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 376 VY------------------SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp SS------------------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC------------------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 33 3334678999999999999999999999999998
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.49 E-value=2.6e-06 Score=90.04 Aligned_cols=83 Identities=5% Similarity=-0.018 Sum_probs=76.9
Q ss_pred hHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHh-cCCHHHHHH
Q 003249 589 SLSVIYQMLESDAP--KGVLYFRQSLLLLRL-----NCPEAAMRSLQLARQHAASD-HERLVYEGWILYD-TSHCEEGLR 659 (836)
Q Consensus 589 aL~~~~~al~~~P~--~~~~~~~~gl~l~~l-----~~~~eAl~~~~~Al~l~P~~-~eal~~~G~il~~-~G~~eeAl~ 659 (836)
+...+.+++++||+ ++.+|.-+|.+|..+ |+.++|.++|++|++++|+. .++++..|..+.. +|++++|.+
T Consensus 182 A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~ 261 (301)
T 3u64_A 182 AVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDE 261 (301)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence 46678999999999 788999999999996 99999999999999999975 9999999999988 599999999
Q ss_pred HHHHHHhcccch
Q 003249 660 KAEESIQMKRSF 671 (836)
Q Consensus 660 ~~~~Ai~l~p~~ 671 (836)
.+++|++++|..
T Consensus 262 ~L~kAL~a~p~~ 273 (301)
T 3u64_A 262 ALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHCCGGG
T ss_pred HHHHHHcCCCCC
Confidence 999999998874
No 233
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=98.46 E-value=3.7e-08 Score=96.20 Aligned_cols=100 Identities=17% Similarity=0.291 Sum_probs=55.1
Q ss_pred EEEEe-CCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCc----------------
Q 003249 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS---------------- 246 (836)
Q Consensus 184 V~~~v-~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~---------------- 246 (836)
|+|+. +|+.|.+||.+ |..|++|+.||.++. ....|.|+ +|+..+|+.|++|+|+..
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~ 79 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDNGVPLP--NVTSKILAKVIEYCKRHVEAAASKAEAVEGAATS 79 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC---------------CCT--TSCHHHHHHHHHC---------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCCceeCC--cCcHHHHHHHHHHHHHcccCCCcccccccccccc
Confidence 66665 89999999998 899999999998764 23578898 799999999999999986
Q ss_pred -----------CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhC--CHHHHHH
Q 003249 247 -----------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA--SREDAVE 290 (836)
Q Consensus 247 -----------l~~~~~~~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~--~~~~a~~ 290 (836)
+. ++.+++.+|+.||+++.+..|.+.|.+.++..+. ++++...
T Consensus 80 ~~~i~~wD~~Fl~-vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~ 135 (160)
T 2p1m_A 80 DDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRT 135 (160)
T ss_dssp ----------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred cchhhHHHHHHHc-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 45 7888999999999999999999999999988774 4555443
No 234
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.46 E-value=7.8e-07 Score=100.75 Aligned_cols=100 Identities=15% Similarity=0.012 Sum_probs=81.9
Q ss_pred HhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCH
Q 003249 649 YDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQL 728 (836)
Q Consensus 649 ~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~ 728 (836)
...|+|++|+..|++++++.-.. +.+++.. .+.+++|+|.+|.++|+|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~--------------lg~~Hp~------------------~a~~~~nLa~~y~~~g~~ 356 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSV--------------FEDSNVY------------------MLHMMYQAMGVCLYMQDW 356 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTT--------------BCTTSHH------------------HHHHHHHHHHHHHHTTCH
T ss_pred hhccCHHHHHHHHHHHHHHhhCc--------------cChhchH------------------HHHHHHHHHHHHHhhcCH
Confidence 36799999999999999875322 3344322 357899999999999999
Q ss_pred HHHHHHHHHHHcC-------Cc---hhHHhhHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCHHH
Q 003249 729 DLAADCYSNALKI-------RH---TRAHQGLARVHFLKNNKTTAYEEMTKLIKKA-----RNNASA 780 (836)
Q Consensus 729 deAi~~y~kAL~l-------~~---~~A~~~la~~~~~~g~~~~A~~~~~kaie~~-----p~~a~A 780 (836)
++|+..|++||++ ++ ...+.|+|.+|..+|++++|...|.+|++|- |+++..
T Consensus 357 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 357 EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999987 12 2578999999999999999999999999764 777544
No 235
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.44 E-value=8e-07 Score=78.47 Aligned_cols=72 Identities=11% Similarity=-0.018 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 600 DAPKGVLYFRQSLLLLRLNC---PEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 600 ~P~~~~~~~~~gl~l~~l~~---~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+|+++..+..+|.++...+. .++|...+++|++++|+++.+++.+|.++++.|+|++|+..++++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 69999999999999986665 7999999999999999999999999999999999999999999999988763
No 236
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.41 E-value=3.3e-06 Score=95.59 Aligned_cols=105 Identities=10% Similarity=0.024 Sum_probs=84.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Q 003249 647 ILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCG 726 (836)
Q Consensus 647 il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g 726 (836)
-+..+|+|++|++.|++++++.-.. +.+++. ....+++|+|.+|..+|
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~--------------lg~~h~------------------~~~~~~~~L~~~y~~~g 343 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSER--------------LPDINI------------------YQLKVLDCAMDACINLG 343 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCC--------------CCTTSH------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHhhccHHHHHHHHHHHHHhccCc--------------CCccch------------------HHHHHHHHHHHHHHhhc
Confidence 3567899999999999999875332 233332 23578999999999999
Q ss_pred CHHHHHHHHHHHHcCC-------c-h--hHHhhHHHHHHhcCCHHHHHHHHHHHHHh-----cCCCHHHHHH
Q 003249 727 QLDLAADCYSNALKIR-------H-T--RAHQGLARVHFLKNNKTTAYEEMTKLIKK-----ARNNASAYEK 783 (836)
Q Consensus 727 ~~deAi~~y~kAL~l~-------~-~--~A~~~la~~~~~~g~~~~A~~~~~kaie~-----~p~~a~Ay~~ 783 (836)
+|++|+..|+++|++. + . ..++++|.+|..+|++++|...|.||++| -|+++..-.-
T Consensus 344 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 344 LLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred cHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 9999999999999871 2 2 57899999999999999999999999976 3777655433
No 237
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.40 E-value=8.2e-07 Score=100.55 Aligned_cols=96 Identities=16% Similarity=0.050 Sum_probs=79.6
Q ss_pred HHHcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccc
Q 003249 614 LLRLNCPEAAMRSLQLARQH-----AASD---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSS 685 (836)
Q Consensus 614 l~~l~~~~eAl~~~~~Al~l-----~P~~---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~ 685 (836)
+...|++++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+..|+++|++....
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~-------------- 362 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF-------------- 362 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH--------------
Confidence 45788999999999999975 4444 5678999999999999999999999999763211
Q ss_pred cCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 686 QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 686 l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+.+ +.+..+..++|+|.+|..+|++++|+..|++|++|
T Consensus 363 lg~------------------~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 363 FPG------------------SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp SCS------------------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC------------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222 33344778999999999999999999999999997
No 238
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.38 E-value=0.00042 Score=79.70 Aligned_cols=215 Identities=9% Similarity=0.005 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHH
Q 003249 496 EAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCW 574 (836)
Q Consensus 496 ~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~ 574 (836)
+.....|+++|...|. +..|..-+..+...|+.++|..-|++|+.. |.....+...+.. .+ .+.. .
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~------~e----~~~~--~ 262 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLV------MD----EEAV--Y 262 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHH------TT----CTHH--H
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhh------cc----hhHH--H
Confidence 4567899999999996 677888888889999999999999999999 9875432211100 00 0000 0
Q ss_pred HhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-C
Q 003249 575 LQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTS-H 653 (836)
Q Consensus 575 ~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G-~ 653 (836)
..+++........ .......+....+|..-+....+.+..+.|...|.+| +..+.....|...+.+.+..| +
T Consensus 263 ~~l~~~~~~~~~~------~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d 335 (493)
T 2uy1_A 263 GDLKRKYSMGEAE------SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGS 335 (493)
T ss_dssp HHHHHHTC----------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhccc------hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCC
Confidence 0111111000000 0000001112345666666666777899999999999 444446667777777777666 5
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHH
Q 003249 654 CEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAAD 733 (836)
Q Consensus 654 ~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~ 733 (836)
.+.|.+.|+++++.-|+.. ..+...+......|+.+.|..
T Consensus 336 ~~~ar~ife~al~~~~~~~----------------------------------------~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 336 RATPYNIFSSGLLKHPDST----------------------------------------LLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp SHHHHHHHHHHHHHCTTCH----------------------------------------HHHHHHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCH----------------------------------------HHHHHHHHHHHHcCCHHHHHH
Confidence 8889888888887554432 223333445566788999999
Q ss_pred HHHHHHcCCchhHHhhHHHHHHhcCCHHHHHHHHHHHHH
Q 003249 734 CYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLIK 772 (836)
Q Consensus 734 ~y~kAL~l~~~~A~~~la~~~~~~g~~~~A~~~~~kaie 772 (836)
.|+++. +...........-...|+.+.+-+-+.++++
T Consensus 376 l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 376 LFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999983 2333333333444556887777777777774
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.35 E-value=1.8e-05 Score=83.62 Aligned_cols=106 Identities=9% Similarity=-0.078 Sum_probs=67.9
Q ss_pred cCCCCHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhc-----CCHHHHHHH
Q 003249 599 SDAPKGVLYFRQSLLLLR-----------LNCPEAAMRSLQLARQHAAS--DHERLVYEGWILYDT-----SHCEEGLRK 660 (836)
Q Consensus 599 ~~P~~~~~~~~~gl~l~~-----------l~~~~eAl~~~~~Al~l~P~--~~eal~~~G~il~~~-----G~~eeAl~~ 660 (836)
.+|+++++++=.|.+... ++...+|...+++|++++|+ +..+|..+|.+|... |+.++|.+.
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 346666666666665532 22345666777777777777 555777777777764 777777777
Q ss_pred HHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 003249 661 AEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD-CGQLDLAADCYSNAL 739 (836)
Q Consensus 661 ~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~-~g~~deAi~~y~kAL 739 (836)
|++||+|+|+.. .++++..|..+.. .|++++|.+.+++||
T Consensus 227 ferAL~LnP~~~---------------------------------------id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 227 FEHLTRYCSAHD---------------------------------------PDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp HHHHHHHCCTTC---------------------------------------SHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC---------------------------------------chHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777766420 2455566666655 367777777777777
Q ss_pred cCCc
Q 003249 740 KIRH 743 (836)
Q Consensus 740 ~l~~ 743 (836)
.++|
T Consensus 268 ~a~p 271 (301)
T 3u64_A 268 AIDP 271 (301)
T ss_dssp HCCG
T ss_pred cCCC
Confidence 7644
No 240
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.34 E-value=1.8e-06 Score=76.26 Aligned_cols=71 Identities=11% Similarity=0.035 Sum_probs=65.9
Q ss_pred CCCChHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCc
Q 003249 475 DPTLSYPYMYRASSLMTKQN---VEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDY 545 (836)
Q Consensus 475 dP~~~~ay~~rg~~l~~~g~---~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~ 545 (836)
+|+++..+..+|.+++..++ .++|...+++|++++|+ ..++..+|..++..|+|++|+..++++++.+|+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 69999999999999976655 79999999999999997 6889999999999999999999999999999993
No 241
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=4.6e-06 Score=80.10 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-C-hHHHHHHHHHHHhcCCHHHHHHHH
Q 003249 462 DKRWEDLDKATALDPTLSYPYMYRASSLMTKQ---NVEAALAEINRILGFK-L-A-LECLELRFCFFLALEDYQAALCDV 535 (836)
Q Consensus 462 ~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g---~~~eAi~~~~kai~l~-P-~-~~~~~~rg~~~~~lg~~~~Ai~d~ 535 (836)
..+...|+++++.+|.+..+.++.|.+|...+ +++++|..+..+++.+ | + .+++|++|..+.++|+|++|++.+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44566689999999999999999999999998 7779999999999999 8 3 589999999999999999999999
Q ss_pred HHHHhhCCCchhh
Q 003249 536 QAILTLSPDYRMF 548 (836)
Q Consensus 536 ~~al~l~P~~~~~ 548 (836)
+++|+++|++..+
T Consensus 95 ~~lL~ieP~n~QA 107 (152)
T 1pc2_A 95 RGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHCTTCHHH
T ss_pred HHHHhcCCCCHHH
Confidence 9999999999653
No 242
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.18 E-value=5.3e-06 Score=74.08 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=68.0
Q ss_pred cEEEEe-CCeEEehhHHHHhhcCHHHHHhhcCCCCcCCcceeEecCCCCCHHHHHHHHHhhccCc--------------C
Q 003249 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFMESLCEDIDLSENNISPSGLRIISDFSVTGS--------------L 247 (836)
Q Consensus 183 DV~~~v-~~~~~~aHr~vLaa~S~yF~amf~~~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~--------------l 247 (836)
-|+++- +|+.|.++|.+ |..|..++.||.+++ |.....|.|+ +|+..+|+.+++|+|.-. .
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Iplp--~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w 80 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIELK--QFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEET--TSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceecC--CcCHHHHHHHHHHHHHhcccCCCccccccCCCc
Confidence 367776 89999999997 899999999999887 7766889999 799999999999999754 2
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 003249 248 NGVTPNLLLEILIFANKF 265 (836)
Q Consensus 248 ~~~~~~~v~~lL~aA~~~ 265 (836)
. ++.+.+.+|+.||+++
T Consensus 81 ~-vd~~~lfeLi~AAnyL 97 (99)
T 1hv2_A 81 E-IPTEMSLELLLAADYL 97 (99)
T ss_dssp C-CCHHHHHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHh
Confidence 3 7889999999999975
No 243
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.10 E-value=9.3e-06 Score=77.94 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=74.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLN---CPEAAMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~---~~~eAl~~~~~Al~l~-P-~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
.|.+.+..+|.+..+.|+.|.+|.+.+ +.++|+..++..++.+ | +..+.+|++|..++++|+|++|+..++++|+
T Consensus 20 ~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 20 KFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 456667788999999999999999999 6669999999999999 7 6799999999999999999999999999999
Q ss_pred cccch
Q 003249 667 MKRSF 671 (836)
Q Consensus 667 l~p~~ 671 (836)
++|++
T Consensus 100 ieP~n 104 (152)
T 1pc2_A 100 TEPQN 104 (152)
T ss_dssp HCTTC
T ss_pred cCCCC
Confidence 99988
No 244
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.06 E-value=5.2e-06 Score=73.71 Aligned_cols=78 Identities=23% Similarity=0.359 Sum_probs=62.3
Q ss_pred EEEEe-CCeEEehhHHHHhhcCHHHHHhhcC--CCCcCCcceeEecCCCCCHHHHHHHHHhhccCc-----------CCC
Q 003249 184 VVFRI-HEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LNG 249 (836)
Q Consensus 184 V~~~v-~~~~~~aHr~vLaa~S~yF~amf~~--~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~-----------l~~ 249 (836)
|+++- +|+.|.++|.+ |..|.+++.||.+ ++.|+....|.|+ +|+..+|+.+++|+|.-. ..
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~--~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~- 78 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP- 78 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHHSCCSCCCCCC-
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCC--CCCHHHHHHHHHHHHHccccCCCcccCCCcc-
Confidence 56665 89999999997 8999999999985 3467777899999 799999999999998753 23
Q ss_pred CCHHHHHHHHHHHHHH
Q 003249 250 VTPNLLLEILIFANKF 265 (836)
Q Consensus 250 ~~~~~v~~lL~aA~~~ 265 (836)
++.+.+.+|+.||+++
T Consensus 79 vd~~~l~eLi~AAnyL 94 (96)
T 2fnj_C 79 IAPEIALELLMAANFL 94 (96)
T ss_dssp CCTTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 7788999999999975
No 245
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.96 E-value=3.6e-05 Score=68.82 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC---------chhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHH
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIR---------HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAYE 782 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~---------~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay~ 782 (836)
+.-.+.+|..+.+.|+|+.|+.-|++|++.. ....+.++|.++.++|+++.|+..++++++++|+++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3457899999999999999999999999851 2357899999999999999999999999999999999988
Q ss_pred HHHH
Q 003249 783 KRSE 786 (836)
Q Consensus 783 ~r~~ 786 (836)
++.-
T Consensus 85 n~~~ 88 (104)
T 2v5f_A 85 NLKY 88 (104)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7753
No 246
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.96 E-value=3e-05 Score=69.37 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhh
Q 003249 478 LSYPYMYRASSLMTKQNVEAALAEINRILGFK-------LA-LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFE 549 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~-------P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~ 549 (836)
++.-++.+|..+++.|+|+.|+..|.+|++.. +. .+.+.++|.++.++|++++|+..++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45678899999999999999999999999863 22 46788899999999999999999999999999997654
Q ss_pred hh
Q 003249 550 GR 551 (836)
Q Consensus 550 ~~ 551 (836)
.+
T Consensus 84 ~n 85 (104)
T 2v5f_A 84 GN 85 (104)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 247
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=97.73 E-value=0.00016 Score=70.84 Aligned_cols=97 Identities=24% Similarity=0.258 Sum_probs=77.7
Q ss_pred cEEEEe-CCeEEehhHHHHhhcCHHHHHhhcCCCC----cCCcceeEecCCCCCHHHHHHHHHhhccCc-----------
Q 003249 183 NVVFRI-HEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGS----------- 246 (836)
Q Consensus 183 DV~~~v-~~~~~~aHr~vLaa~S~yF~amf~~~~~----Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~----------- 246 (836)
-|+|+- +|+.|.+++.+ |..|..++.|+.+.-. +.....|.|+ +|+..+|+.|++|++.-.
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~~~~ 84 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVP--NVRSSVLQKVIEWAEHHRDSNFPDEDDDD 84 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECT--TCCHHHHHHHHHHHHHTTTCCCCC-----
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeC--CCCHHHHHHHHHHHHHcccCCCccccccc
Confidence 466665 78999999998 7889999999975332 2334789998 699999999999998754
Q ss_pred --------------CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhC
Q 003249 247 --------------LNGVTPNLLLEILIFANKFCCERLKDACDRKLASLVA 283 (836)
Q Consensus 247 --------------l~~~~~~~v~~lL~aA~~~c~~~L~~~c~~~l~~~v~ 283 (836)
+. ++.+.+.+|+.||+++.+..|.+.|...++..+.
T Consensus 85 ~~~~~~i~~wD~~Fl~-vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ik 134 (169)
T 3v7d_A 85 SRKSAPVDSWDREFLK-VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 134 (169)
T ss_dssp ---CCCCCHHHHHHTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccccccccHHHHHHHc-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHc
Confidence 23 6778999999999999999999999998877663
No 248
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=97.68 E-value=0.00015 Score=65.52 Aligned_cols=93 Identities=11% Similarity=0.045 Sum_probs=75.6
Q ss_pred cEEEEeCCeEEehhHHHHhhcC-HHHHHhhcCCCC----cCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHH-HHH
Q 003249 183 NVVFRIHEEKIECDRQKFAALS-APFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLL 256 (836)
Q Consensus 183 DV~~~v~~~~~~aHr~vLaa~S-~yF~amf~~~~~----Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~-~v~ 256 (836)
-|+|.|||+.|..++..|.... .+|.+||.+... .....++-|. -+|..|+.+|+|+.||++. ++.+ ...
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiD---Rdp~~F~~IL~~lr~g~l~-~p~~~~~~ 82 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKLV-INKDLAEE 82 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEEC---SCHHHHHHHHHHHHHSCCC-CCTTSCHH
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEec---CChHHHHHHHHHhCCCeeC-CCCCCCHH
Confidence 3889999999999999998775 478999987531 1134566665 8999999999999999998 6544 357
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 003249 257 EILIFANKFCCERLKDACDRKLA 279 (836)
Q Consensus 257 ~lL~aA~~~c~~~L~~~c~~~l~ 279 (836)
.++.-|++|.++.|.+.|...+.
T Consensus 83 ~l~~Ea~fy~l~~L~~~l~~~i~ 105 (107)
T 3drz_A 83 GVLEEAEFYNITSLIKLVKDKIR 105 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 89999999999999999987653
No 249
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=97.46 E-value=0.00026 Score=64.50 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=61.9
Q ss_pred cEEEE-eCCeEEehhHHHHhhcCHHHHHhhcC--CCCcCCcceeEecCCCCCHHHHHHHHHhhccCc-----------CC
Q 003249 183 NVVFR-IHEEKIECDRQKFAALSAPFSAMLNG--SFMESLCEDIDLSENNISPSGLRIISDFSVTGS-----------LN 248 (836)
Q Consensus 183 DV~~~-v~~~~~~aHr~vLaa~S~yF~amf~~--~~~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~-----------l~ 248 (836)
-|+++ -+|+.|.++|. .|..|..++.|+.+ ++.|+....|.|+ +|+..+|+.|++|++.-. ..
T Consensus 18 ~v~L~SsDG~~F~V~~~-~A~~S~tIk~ml~~~~~~~e~~~~~Iplp--nV~s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKRE-HALTSGTIKAMLSGPGQFAENETNEVNFR--EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp EEEEECTTSCEEEEEHH-HHHTSHHHHHHSSCC--------CEEECS--SCCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred EEEEEcCCCCEEEECHH-HHHHhHHHHHHHHhcCCcccccCCceeCC--CCCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 36666 38999999999 57899999999984 4567666789999 799999999999998643 23
Q ss_pred CCCHHHHHHHHHHHHHH
Q 003249 249 GVTPNLLLEILIFANKF 265 (836)
Q Consensus 249 ~~~~~~v~~lL~aA~~~ 265 (836)
++.+.+.+|+.||+++
T Consensus 95 -vd~~~lfeLi~AAnyL 110 (112)
T 1vcb_B 95 -IAPEIALELLMAANFL 110 (112)
T ss_dssp -CCHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHh
Confidence 7899999999999975
No 250
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.24 E-value=0.0015 Score=60.47 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-CC--hHHHHHHHHHHHhcCCHHHHHHHHH
Q 003249 463 KRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEA---ALAEINRILGFK-LA--LECLELRFCFFLALEDYQAALCDVQ 536 (836)
Q Consensus 463 eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~e---Ai~~~~kai~l~-P~--~~~~~~rg~~~~~lg~~~~Ai~d~~ 536 (836)
.+...|.+++..++....+-++.|.+|...++..+ +|..+...++-+ |. -+++|.+|..+.++|+|++|++.++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44555888888899999999999999999998877 999999999988 62 4889999999999999999999999
Q ss_pred HHHhhCCCchhh
Q 003249 537 AILTLSPDYRMF 548 (836)
Q Consensus 537 ~al~l~P~~~~~ 548 (836)
..|+.+|++..+
T Consensus 99 ~lL~~eP~n~QA 110 (126)
T 1nzn_A 99 GLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHCTTCHHH
T ss_pred HHHHhCCCCHHH
Confidence 999999999653
No 251
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.99 E-value=0.053 Score=62.19 Aligned_cols=99 Identities=9% Similarity=0.050 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHh
Q 003249 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA-ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYAL 681 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~-P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL 681 (836)
+...|...-..+.+.|++++|++.|+...+.. +-+...|..+=..+.+.|+.++|.+.|++..+-
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-------------- 169 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-------------- 169 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------------
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 34566666667788899999999998887642 235777888888888999999999888887642
Q ss_pred hccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 682 ADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 682 ~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
|+.|+ ...|+.+=.+|.+.|+.++|.+.+++--+
T Consensus 170 ---G~~Pd----------------------~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 170 ---EVVPE----------------------EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp ---TCCCC----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CCCCC----------------------HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 22222 24677777788888888888888887644
No 252
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.83 E-value=0.0039 Score=57.66 Aligned_cols=80 Identities=11% Similarity=0.082 Sum_probs=71.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 592 VIYQMLESDAPKGVLYFRQSLLLLRLNCPEA---AMRSLQLARQHA-A-SDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 592 ~~~~al~~~P~~~~~~~~~gl~l~~l~~~~e---Al~~~~~Al~l~-P-~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
.|.+.+..++.+..+-|+.|.+|.+.+.... ++..++..++.+ | ..-+.+|++|..++++|+|++|+..++..|+
T Consensus 23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3555667778899999999999999888877 999999999887 5 6778999999999999999999999999999
Q ss_pred cccch
Q 003249 667 MKRSF 671 (836)
Q Consensus 667 l~p~~ 671 (836)
++|++
T Consensus 103 ~eP~n 107 (126)
T 1nzn_A 103 TEPQN 107 (126)
T ss_dssp HCTTC
T ss_pred hCCCC
Confidence 99988
No 253
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.55 E-value=0.16 Score=58.21 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRILG--FKLALECLELRFCFFLALEDYQAALCDVQA 537 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai~--l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~ 537 (836)
...|..+-..+.+.|++++|+..|++..+ +.|+...|...-..|.+.|+.++|.+-|++
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444455555555555555554443 233433344333444444444444444443
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.26 E-value=0.016 Score=56.01 Aligned_cols=135 Identities=13% Similarity=0.053 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHH
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE---------RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAF 674 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e---------al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~ 674 (836)
-++++.+...+...+.|+-|+-....++.+..++++ ++++.|.+++.+|+|-.|...|++||.+...-.-.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 455677777888999999999999998876554444 89999999999999999999999999875321000
Q ss_pred HHHHH-HhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHH-HcCCchhHHhhHHH
Q 003249 675 FLKAY-ALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNA-LKIRHTRAHQGLAR 752 (836)
Q Consensus 675 ~~~a~-aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kA-L~l~~~~A~~~la~ 752 (836)
..+. .++-..-.|+ .... ....+.-+.++.+|.++|++++|+...+.. .+-+..+...-||+
T Consensus 100 -~s~~~~~~~~ss~p~-----------s~~~----~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~Lak 163 (167)
T 3ffl_A 100 -SKVRPSTGNSASTPQ-----------SQCL----PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLAN 163 (167)
T ss_dssp -----------------------------CC----CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHH
T ss_pred -CCccccccccCCCcc-----------cccc----cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHH
Confidence 0000 0000000000 0011 123467788999999999999999886542 12233344445555
Q ss_pred HH
Q 003249 753 VH 754 (836)
Q Consensus 753 ~~ 754 (836)
+|
T Consensus 164 Ly 165 (167)
T 3ffl_A 164 LY 165 (167)
T ss_dssp HC
T ss_pred Hh
Confidence 44
No 255
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=95.87 E-value=0.0096 Score=59.41 Aligned_cols=92 Identities=11% Similarity=0.059 Sum_probs=73.6
Q ss_pred EEEEeCCeEEehhHHHHhhcC-HHHHHhhcCCC--C--cCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHH-HHHH
Q 003249 184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSF--M--ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (836)
Q Consensus 184 V~~~v~~~~~~aHr~vLaa~S-~yF~amf~~~~--~--Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~-~v~~ 257 (836)
|+|.|||+.|...+..|.... .+|..||.+.. . .....++-|. -+|..|+.+|+|+.||++. ++.+ ....
T Consensus 14 V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFID---RDP~~F~~ILnyLRtG~L~-lP~~~~~~~ 89 (202)
T 3drx_A 14 VRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLID---RDPTYFGPVLNYLRHGKLV-INKDLAEEG 89 (202)
T ss_dssp EEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEEC---SCSTTHHHHHHHHHHSCCC-CCTTSCHHH
T ss_pred EEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEec---CChHHHHHHHHHhcCCccC-CCCCCCHHH
Confidence 788999999999999998764 37899998752 1 1123566665 7999999999999999998 6554 3467
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 003249 258 ILIFANKFCCERLKDACDRKLA 279 (836)
Q Consensus 258 lL~aA~~~c~~~L~~~c~~~l~ 279 (836)
++.-|++|.++.|.+.|...+.
T Consensus 90 l~eEA~FygL~~Lv~~l~~~i~ 111 (202)
T 3drx_A 90 VLEEAEFYNITSLIKLVKDKIR 111 (202)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHHHHHHH
Confidence 8999999999999999987653
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.31 E-value=0.15 Score=47.96 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=64.3
Q ss_pred CCCChHHHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 475 DPTLSYPYMYRASSLMTKQNVE---AALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 475 dP~~~~ay~~rg~~l~~~g~~~---eAi~~~~kai~l~P~--~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
++-...+-++.|.+|....+.+ ++|..+...+.-.|. -+++|.+|..+.++|+|++|.+..+..|+.+|++..
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 4567888899998888877654 799999999998884 488999999999999999999999999999999965
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.94 E-value=0.098 Score=48.56 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 478 LSYPYMYRASSLMTKQNV---EAALAEINRILGFKLA--LECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 478 ~~~ay~~rg~~l~~~g~~---~eAi~~~~kai~l~P~--~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
.+.+-++.|-+|....+. .++|..+...++-+|. -+++|.+|..+.++|+|++|.+..+..|+++|++..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 457777777777766654 4799999999999994 488999999999999999999999999999999965
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.90 E-value=0.087 Score=50.84 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHH
Q 003249 640 RLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLG 719 (836)
Q Consensus 640 al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG 719 (836)
+++.-...+++.|.|+-|+-.++.++.+..++ ++... ...+.+++..+|
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~----------------~~~~s---------------p~~~~~~l~~la 70 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN----------------PELFS---------------PPQKYQLLVYHA 70 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS----------------TTSSC---------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC----------------ccccc---------------HHHHHHHHHHHH
Confidence 44455566889999999999888877653211 11000 001257899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCC-----ch----------------------hHHhhHHHHHHhcCCHHHHHHHHH
Q 003249 720 SVYVDCGQLDLAADCYSNALKIR-----HT----------------------RAHQGLARVHFLKNNKTTAYEEMT 768 (836)
Q Consensus 720 ~~y~~~g~~deAi~~y~kAL~l~-----~~----------------------~A~~~la~~~~~~g~~~~A~~~~~ 768 (836)
.+++..|+|..|...|++||++. .. ...+.+|.+|...|++++|+..++
T Consensus 71 dalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 71 DSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 99999999999999999998752 11 244667777777777777776553
No 259
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.88 E-value=0.12 Score=49.13 Aligned_cols=117 Identities=11% Similarity=-0.010 Sum_probs=79.9
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCC
Q 003249 632 QHAASDHERLVYEGWILYDTSHC------EEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCP 705 (836)
Q Consensus 632 ~l~P~~~eal~~~G~il~~~G~~------eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~ 705 (836)
-+.|++++.|...-..+-+.|+. ++=++.|++|+..-|-..-.+++
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wr---------------------------- 58 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNE---------------------------- 58 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCH----------------------------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHH----------------------------
Confidence 35788888887777777777887 77778888888654322111111
Q ss_pred ccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--chhHHhhHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHH
Q 003249 706 SDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR--HTRAHQGLARVHFLKNNKTTAYEEMTKLIKKARNNASAY 781 (836)
Q Consensus 706 ~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~--~~~A~~~la~~~~~~g~~~~A~~~~~kaie~~p~~a~Ay 781 (836)
+..-.|...+ .+...++.++|.+.|+.|+.+. ....|...|..-..+|+.+.|..-+.+||...|...+..
T Consensus 59 ----rYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 59 ----SFARIQVRFA-ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp ----HHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred ----HHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 1233455555 3466689999999999998872 235666777777788999999999989988888765543
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.74 E-value=0.22 Score=46.81 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 601 APKGVLYFRQSLLLLRLNCP---EAAMRSLQLARQHAA-SDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 601 P~~~~~~~~~gl~l~~l~~~---~eAl~~~~~Al~l~P-~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+-....-|+-+.+|.+.+.. .+++..++..++.+| ..-+-+|+++..++++|+|++|..+.+..|+++|++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 56788899999999887765 478999999999888 567889999999999999999999999999999988
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.27 Score=58.78 Aligned_cols=60 Identities=17% Similarity=0.017 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEES 664 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~A 664 (836)
.+...++.-+...|+++-|+.+.++|+...|++-+.|+.++.+|..+|+||.||-..+-.
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345556777788999999999999999999999999999999999999999999654433
No 262
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.30 E-value=0.57 Score=44.46 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=50.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 615 LRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 615 ~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
..+++.++|.+.|+.++.+....+-.|...+.--..+|+...|.....+||.+.|..
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 445788999999999999988898899999999999999999999999999988765
No 263
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.05 E-value=0.16 Score=47.06 Aligned_cols=69 Identities=16% Similarity=0.068 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 603 KGVLYFRQSLLLLRLNCP---EAAMRSLQLARQHAAS-DHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~---~eAl~~~~~Al~l~P~-~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
.+.+-|+-|.+|.+.+.. .+++..++..++.+|. .-+-+++++..++++|+|++|+...+..++++|++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 567888888888876654 4789999999999994 58899999999999999999999999999999998
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.96 E-value=0.97 Score=49.94 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 003249 609 RQSLLLLRLNCPEAAMRSLQLARQH--A----ASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (836)
Q Consensus 609 ~~gl~l~~l~~~~eAl~~~~~Al~l--~----P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~ 682 (836)
++|.++...|+|.+|+..+++.++- . ..-.|.+.....++..+|++.++-+.|.+|....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~-------------- 169 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA-------------- 169 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh--------------
Confidence 7788999999999999999988873 1 2234667788889999999999999888887532
Q ss_pred ccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHH-hcCCHHHHHHHHHHHHc
Q 003249 683 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYV-DCGQLDLAADCYSNALK 740 (836)
Q Consensus 683 ~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~-~~g~~deAi~~y~kAL~ 740 (836)
.++-++|.. .+.....-|..+. ..++|.+|..+|-+|++
T Consensus 170 -----------------~ai~~~p~i--~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 170 -----------------NAIYCPPKV--QGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp -----------------HHSCCCHHH--HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred -----------------ccCCCCHHH--HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 111111111 1445567788999 89999999999999974
No 265
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=92.96 E-value=0.074 Score=48.37 Aligned_cols=82 Identities=10% Similarity=0.133 Sum_probs=61.3
Q ss_pred EEEEeCCeEEehhHHHHhhcC-HHHHHhhcCCC-CcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHH-HHHHHHH
Q 003249 184 VVFRIHEEKIECDRQKFAALS-APFSAMLNGSF-MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEILI 260 (836)
Q Consensus 184 V~~~v~~~~~~aHr~vLaa~S-~yF~amf~~~~-~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~-~v~~lL~ 260 (836)
|+|.|||+.|...+..|.... ..+.+||++.. ......++-|. -+|..|+.+|+|+.||++. ++.+ .+..++.
T Consensus 7 V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnylR~G~l~-~p~~~~~~~~~~ 82 (115)
T 3kvt_A 7 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFD---RHPGVFAQIINYYRSGKLH-YPTDVCGPLFEE 82 (115)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEEC---SCTTTHHHHHHHHHHSCBC-CCSSSCHHHHHH
T ss_pred EEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEe---cChHHHHHHHHHhcCCCCC-CCCcccHHHHHH
Confidence 889999999999999998663 34566776532 12344667776 7899999999999999997 6543 4567778
Q ss_pred HHHHHhHHH
Q 003249 261 FANKFCCER 269 (836)
Q Consensus 261 aA~~~c~~~ 269 (836)
-|++|.++.
T Consensus 83 Ea~fy~i~~ 91 (115)
T 3kvt_A 83 ELEFWGLDS 91 (115)
T ss_dssp HHHHHTCCG
T ss_pred HHHHhCCCh
Confidence 888865543
No 266
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.91 E-value=1.3 Score=42.70 Aligned_cols=74 Identities=18% Similarity=0.090 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------cCCCCHHHH-HHHHHHHHhcCCHHHHHHHHH
Q 003249 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLARQ-----------------HAASDHERL-VYEGWILYDTSHCEEGLRKAE 662 (836)
Q Consensus 601 P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~-----------------l~P~~~eal-~~~G~il~~~G~~eeAl~~~~ 662 (836)
-+-..+-+-.++++.++++|..|+.+++..++ .+|.|-|-. ..+|.++.++|+.+|||..|.
T Consensus 59 lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 59 LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 45667778889999999999999999999992 357788864 558999999999999999999
Q ss_pred HHHhcccchHHH
Q 003249 663 ESIQMKRSFEAF 674 (836)
Q Consensus 663 ~Ai~l~p~~~a~ 674 (836)
.+..+.|=+.+-
T Consensus 139 ~Sf~~~~lf~~v 150 (242)
T 3kae_A 139 RSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHCCCHHHH
T ss_pred hhcCCccccchH
Confidence 999998877543
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.65 E-value=1.3 Score=46.11 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=51.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchh
Q 003249 488 SLMTKQNVEAALAEINRILGFKLAL-ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRM 547 (836)
Q Consensus 488 ~l~~~g~~~eAi~~~~kai~l~P~~-~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~ 547 (836)
.+.+.|+.++||+.....|+-+|.+ +.-..+..++.-.|+++.|+.-.+.+.+++|+...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 4677899999999999999999964 54445677888889999999999999999999854
No 268
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.54 E-value=9 Score=45.27 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=21.4
Q ss_pred HhcCCHHHHHH-HHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHH
Q 003249 490 MTKQNVEAALA-EINRILGFKLALECLELRFCFFLALEDYQAALCD 534 (836)
Q Consensus 490 ~~~g~~~eAi~-~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d 534 (836)
...+++++|.. .+ ..=|+...+......+..+|.+++|+..
T Consensus 610 ~~~~~~~~a~~~~l----~~i~~~~~~~~~~~~l~~~~~~~~a~~~ 651 (814)
T 3mkq_A 610 TLRGEIEEAIENVL----PNVEGKDSLTKIARFLEGQEYYEEALNI 651 (814)
T ss_dssp HHTTCHHHHHHHTG----GGCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHH----hcCCchHHHHHHHHHHHhCCChHHheec
Confidence 35777887755 22 1111111122334566777887777753
No 269
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.94 E-value=2.8 Score=46.11 Aligned_cols=59 Identities=7% Similarity=-0.085 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 608 FRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 608 ~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
..++..+..+|++++|+..++.++..+|-+-.++..+=.+|+..|+..+|++.|++.-+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566778999999999999999999999999999999999999999999999988754
No 270
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.84 E-value=3.8 Score=48.59 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=55.6
Q ss_pred HcCCHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHH
Q 003249 616 RLNCPEAAMR-SLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTV 694 (836)
Q Consensus 616 ~l~~~~eAl~-~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~ 694 (836)
..+++++|.+ .+. .-| +...+......+.++|..++|+...+. ....|..+..+++
T Consensus 611 ~~~~~~~a~~~~l~----~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~~~f~~~l~~~~----------- 667 (814)
T 3mkq_A 611 LRGEIEEAIENVLP----NVE-GKDSLTKIARFLEGQEYYEEALNISPD-------QDQKFELALKVGQ----------- 667 (814)
T ss_dssp HTTCHHHHHHHTGG----GCC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HHHHHHHHHHHTC-----------
T ss_pred HhCCHHHHHHHHHh----cCC-chHHHHHHHHHHHhCCChHHheecCCC-------cchheehhhhcCC-----------
Confidence 4677777766 330 001 022234455566788888888753321 1112222222222
Q ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 695 VSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 695 i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
+++|.++. +.++....|.++|..+.+.|+++.|+.||.++=.
T Consensus 668 ---~~~A~~~~-~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 668 ---LTLARDLL-TDESAEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp ---HHHHHHHH-TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ---HHHHHHHH-HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 22222221 1123357899999999999999999999999743
No 271
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.44 E-value=2.9 Score=45.98 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=65.7
Q ss_pred HHHHHHhhccchHHHHHHHHHHHhccchhhHhhH--------HHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcC
Q 003249 388 QLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGL--------ARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYC 459 (836)
Q Consensus 388 ~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~l--------a~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~ 459 (836)
..|......|+.++|.+.+++|+.+-....+.++ -+..+. ..+..+.. ....++...|
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~-~~~~~a~~----------~~~~~~l~~g--- 185 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALV-EDKVLAHT----------AKAEAEIACG--- 185 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHH-HHHHHHHH----------HHHHHHHHTT---
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHH-HHHHHHHH----------HHHHHHHHCC---
Confidence 3444445678888899999999987222122111 011100 00011111 1223333333
Q ss_pred ChhhHHHHHHHHHhcCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 460 EGDKRWEDLDKATALDPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (836)
Q Consensus 460 ~~~eAi~d~~kAi~ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai 506 (836)
...+|+..+.+++..+|-+..+|..+-.+|...|+..+|+..|++.-
T Consensus 186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34888888899999999998899999999999999999998888763
No 272
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=91.11 E-value=0.2 Score=46.11 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=61.0
Q ss_pred cEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCC----CcCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHH-HHHH
Q 003249 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSF----MESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (836)
Q Consensus 183 DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~----~Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~-~v~~ 257 (836)
=|+|.|||+.|...+..|.... .+||...- ......++-|. =+|..|+.||+|+.||++. ++.+ .+..
T Consensus 14 ~V~LNVGG~~F~t~~~TL~~~p---~S~L~~~~~~~~~~~~~g~~FiD---Rdp~~F~~ILnflR~G~l~-~p~~~~~~~ 86 (124)
T 1s1g_A 14 LIVLNVSGRRFQTWRTTLERYP---DTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLH-YPRYECISA 86 (124)
T ss_dssp EEEEEETTEEEEEEHHHHTTST---TSSTTSSGGGGTBCSSSCSEEEC---SCHHHHHHHHHHHHHSCBC-CCTTSCHHH
T ss_pred EEEEEeCCEEEEEeHHHHhcCC---CceecccCCcccccCCCCcEEEc---CChHHHHHHHHHHhcCCCC-CCCCcCHHH
Confidence 3889999999999999997532 34554411 11234566665 7999999999999999998 6554 4778
Q ss_pred HHHHHHHHhHHHH
Q 003249 258 ILIFANKFCCERL 270 (836)
Q Consensus 258 lL~aA~~~c~~~L 270 (836)
++.-|++|++..+
T Consensus 87 l~~Ea~fy~i~~l 99 (124)
T 1s1g_A 87 YDDELAFYGILPE 99 (124)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHHcCCChH
Confidence 8888999887765
No 273
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=90.84 E-value=0.22 Score=46.80 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=60.6
Q ss_pred cEEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCC----cCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHH-HHHH
Q 003249 183 NVVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLE 257 (836)
Q Consensus 183 DV~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~----Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~-~v~~ 257 (836)
=|+|.|||+.|...+..|... -.+||...-+ .....++-|. =++..|+.||+|+.||++. ++.+ .+..
T Consensus 36 ~V~LNVGG~~F~T~~~TL~~~---P~S~L~~~~~~~~~~~~~g~yFiD---Rdp~~F~~ILnflR~G~l~-~p~~~~~~~ 108 (140)
T 2nz0_B 36 LIVLNVSGRRFQTWRTTLERY---PDTLLGSTEKEFFFNEDTKEYFFD---RDPEVFRCVLNFYRTGKLH-YPRYECISA 108 (140)
T ss_dssp EEEEEETTEEEEEEHHHHHTC---TTSTTTSGGGGGSEETTTTEEEEC---SCHHHHHHHHHHHHHSSBC-CCTTSCHHH
T ss_pred EEEEEECCEEEEeeHHHHhcC---CCeeecccCCcccccCCCCeEEEe---CCcHHHHHHHHHHhcCCcC-CCCCcCHHH
Confidence 489999999999999999753 2455654111 1234566665 7999999999999999998 6544 4677
Q ss_pred HHHHHHHHhHHHH
Q 003249 258 ILIFANKFCCERL 270 (836)
Q Consensus 258 lL~aA~~~c~~~L 270 (836)
++.-|++|++..+
T Consensus 109 l~eEa~fy~i~~l 121 (140)
T 2nz0_B 109 YDDELAFYGILPE 121 (140)
T ss_dssp HHHHHHHHTCCGG
T ss_pred HHHHHHHcCCChH
Confidence 8888888877655
No 274
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.76 E-value=2.3 Score=44.13 Aligned_cols=112 Identities=10% Similarity=-0.040 Sum_probs=80.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHH---HHHHHHHhhccc----
Q 003249 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEA---FFLKAYALADSS---- 685 (836)
Q Consensus 613 ~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a---~~~~a~aL~~~~---- 685 (836)
-+++.|..++|++.....++-+|.|++....+-..|.-.|+++.|+.-.+.+.+++|++.. .| +....++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y-r~lI~aE~~R~~v 84 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL-RHLVKAAQARKDF 84 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH-HHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999832 22 211111100
Q ss_pred -------cCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc
Q 003249 686 -------QDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH 743 (836)
Q Consensus 686 -------l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~ 743 (836)
.-++.+...+ ...-.++.....|+.++|.+.=.+|++..|
T Consensus 85 faG~~~P~~~g~~~~w~------------------~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 85 AQGAATAKVLGENEELT------------------KSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp TTSCCCEECCCSCHHHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HcCCCCCCCCCCCHHHH------------------HHHHHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 0111111112 223334455667899999999999987644
No 275
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=90.63 E-value=0.11 Score=45.96 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=57.5
Q ss_pred EEEEeCCeEEehhHHHHhhcC-HHHHHhhcC-CCCcCCcceeEecCCCCCHHHHHHHHHhhcc-CcCCCCCHH-HHHHHH
Q 003249 184 VVFRIHEEKIECDRQKFAALS-APFSAMLNG-SFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPN-LLLEIL 259 (836)
Q Consensus 184 V~~~v~~~~~~aHr~vLaa~S-~yF~amf~~-~~~Es~~~~I~l~~~~is~~~~~~ll~f~Yt-g~l~~~~~~-~v~~lL 259 (836)
|+|.|||+.|...+..|...- ..+.+|+.. ........++-|. -+|..|+.+|+|+.| |++. ++.+ .+..++
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFiD---Rdp~~F~~ILnflR~~G~l~-~p~~~~~~~~~ 78 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFFD---RNRPSFDAILYFYQSGGRLR-RPVNVPLDVFS 78 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEEC---SCSTTHHHHHHHHHTTSCCC-CCTTSCHHHHH
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEEc---CChHHHHHHHHHHhcCCccc-CCCCCCHHHHH
Confidence 789999999999999996431 123333321 1111244677776 789999999999999 8997 5443 466788
Q ss_pred HHHHHHhHHH
Q 003249 260 IFANKFCCER 269 (836)
Q Consensus 260 ~aA~~~c~~~ 269 (836)
.-|++|.++.
T Consensus 79 ~Ea~fy~i~~ 88 (100)
T 1t1d_A 79 EEIKFYELGE 88 (100)
T ss_dssp HHHHHTTCCH
T ss_pred HHHHHcCCCH
Confidence 8888876644
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.62 E-value=9.3 Score=42.03 Aligned_cols=138 Identities=12% Similarity=-0.043 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHhccchhhHhhHHHHHHhcCCHHHHHHHHHHhHhccCCchHHHHHhhhcCChh
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAVNAGHIYSIAGLARLGYIKGHKLWAYEKLNSVISSVTPLGWMYQERSLYCEGD 462 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al~l~~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~~~~~~~ay~~r~~~~~~~ 462 (836)
-.+.+.+|..|...|++++-.+.+...... .....- ..+.+.....|....+.+.....
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~k----------ak~~k~v~~l~~~~~~~~~~~~~-------- 77 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPF---LSSISK----------AKAAKLVRSLVDMFLDMDAGTGI-------- 77 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTG---GGGSCH----------HHHHHHHHHHHHHHTTSCCCHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---HHHhch----------HHHHHHHHHHHHHHhcCCCcHHH--------
Confidence 358889999999999998887777544221 111111 12333344444443222211111
Q ss_pred hHHHHHHHHHhcCCCChHHH------HHHHHHHHhcCCHHHHHHHHHHHHhc----CCCh---HHHHHHHHHHHhcCCHH
Q 003249 463 KRWEDLDKATALDPTLSYPY------MYRASSLMTKQNVEAALAEINRILGF----KLAL---ECLELRFCFFLALEDYQ 529 (836)
Q Consensus 463 eAi~d~~kAi~ldP~~~~ay------~~rg~~l~~~g~~~eAi~~~~kai~l----~P~~---~~~~~rg~~~~~lg~~~ 529 (836)
-+..+..+|+..-+.--.| .++|..|.+.|+|.+|+..+++..+- +... +.+.....+|..+|++.
T Consensus 78 -~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~ 156 (394)
T 3txn_A 78 -EVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLP 156 (394)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHH
Confidence 1112223332222111122 37899999999999999999999873 2221 44445577899999999
Q ss_pred HHHHHHHHHHhhC
Q 003249 530 AALCDVQAILTLS 542 (836)
Q Consensus 530 ~Ai~d~~~al~l~ 542 (836)
++-+.|.+|.+..
T Consensus 157 k~k~~l~~a~~~~ 169 (394)
T 3txn_A 157 KARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987763
No 277
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.58 E-value=1.2 Score=50.81 Aligned_cols=63 Identities=13% Similarity=-0.067 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMK 668 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~ 668 (836)
....+|.+..-...++.|...|.+|+.++|+....++.+|.+....|+.-+|+-.|-+++...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~ 216 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence 344677777777888899999999999999999999999999988899988988888888654
No 278
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=88.94 E-value=0.25 Score=44.08 Aligned_cols=80 Identities=14% Similarity=0.105 Sum_probs=59.5
Q ss_pred EEEEeCCeEEehhHHHHhhcCHHHHHhhcCCCC----cCCcceeEecCCCCCHHHHHHHHHhhccCcCCCCCHH-HHHHH
Q 003249 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNGSFM----ESLCEDIDLSENNISPSGLRIISDFSVTGSLNGVTPN-LLLEI 258 (836)
Q Consensus 184 V~~~v~~~~~~aHr~vLaa~S~yF~amf~~~~~----Es~~~~I~l~~~~is~~~~~~ll~f~Ytg~l~~~~~~-~v~~l 258 (836)
|+|.|||+.|...+..|.... .+||...-+ .....++-|. =+|..|+.+|+|+.||++. ++.+ .+..+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p---~s~L~~~~~~~~~~~~~~~~FiD---Rdp~~F~~ILnflR~g~l~-~p~~~~~~~l 74 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYP---DTLLGSSERDFFYHPETQQYFFD---RDPDIFRHILNFYRTGKLH-YPRHECISAY 74 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSC---SSSTTSGGGGGGEEGGGTEEEEC---SCTTTHHHHHHHHHHSCBC-CCTTSCHHHH
T ss_pred EEEEECCEEEEEeHHHHhcCC---CccccccCCcccccCCCCcEEEe---CCcHHHHHHHHHHhcCCCC-CCCCcCHHHH
Confidence 789999999999999997542 345554111 1233566666 7999999999999999998 6544 46778
Q ss_pred HHHHHHHhHHHH
Q 003249 259 LIFANKFCCERL 270 (836)
Q Consensus 259 L~aA~~~c~~~L 270 (836)
+.-|++|++..+
T Consensus 75 ~~Ea~fy~i~~l 86 (105)
T 1nn7_A 75 DEELAFFGLIPE 86 (105)
T ss_dssp HHHHHHHTCCSC
T ss_pred HHHHHHcCCCHH
Confidence 888888777654
No 279
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.05 E-value=0.5 Score=41.90 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003249 250 VTPNLLLEILIFANKFCCERLKDACDRKLA 279 (836)
Q Consensus 250 ~~~~~v~~lL~aA~~~c~~~L~~~c~~~l~ 279 (836)
++++|+..++.+|+.+.|+.|+..|...+.
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~ 37 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAK 37 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 667777788888887777777777766543
No 280
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.80 E-value=2.9 Score=50.01 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc-hhHHhhHHHHHHhcC---------CHHHHHHHHHHHH
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIRH-TRAHQGLARVHFLKN---------NKTTAYEEMTKLI 771 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~-~~A~~~la~~~~~~g---------~~~~A~~~~~kai 771 (836)
+.=|.-+|.+-..+++++||+++|+.+|..+. ..+..+|=.+|...+ +.+..+...-|.+
T Consensus 613 ~lEWEiLGlla~RL~h~~EA~~a~~~~l~~RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~ 682 (754)
T 4gns_B 613 GLEWELLGLIMLRTWHWEDAVACLRTSIVARFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI 682 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence 56699999999999999999999999999874 357777777887766 6677776666665
No 281
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=85.06 E-value=3.2 Score=47.29 Aligned_cols=61 Identities=8% Similarity=-0.161 Sum_probs=53.8
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 003249 589 SLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILY 649 (836)
Q Consensus 589 aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~ 649 (836)
+...|.+|+.+.|+++..|+.+|.+....|+.-+|+-.|.+++......+.+..|+..++.
T Consensus 171 A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 6778899999999999999999999999999999999999999888888888888887764
No 282
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.34 E-value=14 Score=46.35 Aligned_cols=138 Identities=12% Similarity=0.061 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCchhhhhhHHHHHHHHHH
Q 003249 484 YRASSLMTKQNVEAALAEINRILGFKLA-LECLELRFCFFLALEDYQAALCDVQAILT-LSPDYRMFEGRVAASQLHMLV 561 (836)
Q Consensus 484 ~rg~~l~~~g~~~eAi~~~~kai~l~P~-~~~~~~rg~~~~~lg~~~~Ai~d~~~al~-l~P~~~~~~~~~~~~~~~~~l 561 (836)
.+...+...++++-|.. + +..-|. +..-+.+|.++...|++++|..+|++|-. +.++.... ....
T Consensus 817 ~l~~~l~~~~~~~~~~~-l---~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-~~~~-------- 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ-L---IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-AVLR-------- 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH-H---HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-SSHH--------
T ss_pred HHHHHHHHhhhHHHHHH-H---hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-hhhc--------
Confidence 34455677777766543 3 334443 44457799999999999999999998743 21211100 0000
Q ss_pred HHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--
Q 003249 562 REHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHE-- 639 (836)
Q Consensus 562 ~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~e-- 639 (836)
. +..+..........+..|+.-..++.+.|.++.+++..+.|++..+.+.+
T Consensus 884 -----~----------------------~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~ 936 (1139)
T 4fhn_B 884 -----E----------------------FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDL 936 (1139)
T ss_dssp -----H----------------------HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHH
T ss_pred -----c----------------------cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhh
Confidence 0 00000011112223445555666778899999999999999987754433
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHH
Q 003249 640 ---RLVYEGWILYDTSHCEEGLRKA 661 (836)
Q Consensus 640 ---al~~~G~il~~~G~~eeAl~~~ 661 (836)
.|.+.=....++|+|++|....
T Consensus 937 ~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 937 SIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred HHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 4555666678999999996544
No 283
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=84.20 E-value=5.7 Score=38.67 Aligned_cols=85 Identities=16% Similarity=0.096 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC----------chhHH------------hhH-HHHHHhcCCHHHHHHHHH
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALKIR----------HTRAH------------QGL-ARVHFLKNNKTTAYEEMT 768 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~----------~~~A~------------~~l-a~~~~~~g~~~~A~~~~~ 768 (836)
..-|..+|..-...|+++-|..||.++=.+. ...-. +++ ..+++..|+++++++-|
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL- 112 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIF- 112 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHH-
Confidence 5689999999999999999999999985542 11111 122 22445566666666333
Q ss_pred HHHHhcCCCHHHHHHHHHccCHHHHHHHHHHh
Q 003249 769 KLIKKARNNASAYEKRSEYCDRELTRADLEMV 800 (836)
Q Consensus 769 kaie~~p~~a~Ay~~r~~~~~~~~A~~D~~~A 800 (836)
......+.||.--..||--+.|-.-.+.+
T Consensus 113 ---~~~~r~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 113 ---AEGGSLPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp ---HHTTCHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ---HHCCChHHHHHHHHHcCcHHHHHHHHHHh
Confidence 34455567776665666666665555443
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=83.99 E-value=9.3 Score=36.88 Aligned_cols=118 Identities=15% Similarity=0.050 Sum_probs=82.0
Q ss_pred cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHh--h--CCCchhhh
Q 003249 474 LDPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLALECLELRFCFFLALEDYQAALCDVQAILT--L--SPDYRMFE 549 (836)
Q Consensus 474 ldP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~--l--~P~~~~~~ 549 (836)
|-|..++.-.-.+.++.-.|.|..|+-.+. .+|- .-+.+....+|..+.||..|+.+.+..|+ . ||+--.
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~lNT-~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~-- 101 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLH---KLNT-CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDA-- 101 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHH---TCCB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCH--
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHH---hcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccc--
Confidence 346666666778899999999988876443 2221 34456688999999999999999999994 3 343210
Q ss_pred hhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Q 003249 550 GRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDAPKGVL-YFRQSLLLLRLNCPEAAMRSLQ 628 (836)
Q Consensus 550 ~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P~~~~~-~~~~gl~l~~l~~~~eAl~~~~ 628 (836)
.+ +..=.||.+-+. +...|.++..+|.-+||++.|.
T Consensus 102 ------------------------------------------~~-~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 102 ------------------------------------------RI-QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp ------------------------------------------HH-HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------------------------------------------cc-ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 00 112234666555 4457889999999999999999
Q ss_pred HHHHcCCCCHHH
Q 003249 629 LARQHAASDHER 640 (836)
Q Consensus 629 ~Al~l~P~~~ea 640 (836)
....+.|-.+..
T Consensus 139 ~Sf~~~~lf~~v 150 (242)
T 3kae_A 139 RSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHCCCHHHH
T ss_pred hhcCCccccchH
Confidence 999999976654
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.04 E-value=0.95 Score=51.51 Aligned_cols=141 Identities=17% Similarity=0.134 Sum_probs=56.2
Q ss_pred HHHcCCHHHHHHHHHHHH-----------HcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 003249 614 LLRLNCPEAAMRSLQLAR-----------QHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (836)
Q Consensus 614 l~~l~~~~eAl~~~~~Al-----------~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~ 682 (836)
+...+++++|..+-...+ .+++=.+..|++.++++-..|+..+.+......+.+.|..-+.+-- +
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rt----a 221 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKI----A 221 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHH----C
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH----H
Confidence 345667777776655443 2466677888899999888999888877777777665543111100 0
Q ss_pred ccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCc-------hhHHhhHHHHHH
Q 003249 683 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIRH-------TRAHQGLARVHF 755 (836)
Q Consensus 683 ~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~-------~~A~~~la~~~~ 755 (836)
.+..+. ...+..++-+=..|...+.|+.|....+++.-+.+ .+-++.+|+++.
T Consensus 222 --~lr~D~------------------~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a 281 (523)
T 4b4t_S 222 --SLKHDN------------------ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINA 281 (523)
T ss_dssp --CSCSSS------------------CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHH
T ss_pred --hcccCc------------------chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHH
Confidence 111111 01134556666667777788888888888743321 134567788888
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCH
Q 003249 756 LKNNKTTAYEEMTKLIKKARNNA 778 (836)
Q Consensus 756 ~~g~~~~A~~~~~kaie~~p~~a 778 (836)
.+++|.+|.+.++.|+...|.+.
T Consensus 282 ~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 282 IQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HhccHHHHHHHHHHHHHhCCcch
Confidence 88888888888888887777654
No 286
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=78.19 E-value=51 Score=31.86 Aligned_cols=112 Identities=7% Similarity=-0.039 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhh
Q 003249 603 KGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALA 682 (836)
Q Consensus 603 ~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~ 682 (836)
++...|.+++ .+|+++.|.+..+.. ++..-|..+|..-..+|+++-|..+|.++=.... ..|.. ...+
T Consensus 7 D~~~rF~LAL---~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~---L~~Ly-~~tg 74 (177)
T 3mkq_B 7 DPHIRFDLAL---EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDK---LSFLY-LVTG 74 (177)
T ss_dssp CHHHHHHHHH---HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH---HHHHH-HHHT
T ss_pred ChHHHHHHHH---hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHH---HHHHH-HHhC
Confidence 3445555544 679999999987665 7788999999999999999999999988753211 11111 0011
Q ss_pred ccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 683 DSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 683 ~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+.+....+-+.|... .-++-....+.-+|+++++++.|.+.=.+
T Consensus 75 -------~~e~L~kla~iA~~~--------g~~n~af~~~l~lGdv~~~i~lL~~~~r~ 118 (177)
T 3mkq_B 75 -------DVNKLSKMQNIAQTR--------EDFGSMLLNTFYNNSTKERSSIFAEGGSL 118 (177)
T ss_dssp -------CHHHHHHHHHHHHHT--------TCHHHHHHHHHHHTCHHHHHHHHHHTTCH
T ss_pred -------CHHHHHHHHHHHHHC--------ccHHHHHHHHHHcCCHHHHHHHHHHCCCh
Confidence 111111111111110 12445567788899999999988665443
No 287
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=77.65 E-value=1.1e+02 Score=35.48 Aligned_cols=162 Identities=12% Similarity=0.050 Sum_probs=101.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 003249 590 LSVIYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQMKR 669 (836)
Q Consensus 590 L~~~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p 669 (836)
..-+.+.....+++......-+.++ +.|+++.|...|++.-.-.++.+...|.+|.++..+|+.++|...|+++.+ .+
T Consensus 272 ~~~~~~~~~~~~~~~~~e~~~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~-~~ 349 (618)
T 1qsa_A 272 AKWRDDAIMRSQSTSLIERRVRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR 349 (618)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC
T ss_pred HHHHHhccccCCChHHHHHHHHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc-CC
Confidence 3344454444444433444444554 669999999999887776567888999999999999999999999999986 33
Q ss_pred chHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccc--hHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCchhHH
Q 003249 670 SFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLR--KGQALNNLGSVYVDCGQLDLAADCYSNALKIRHTRAH 747 (836)
Q Consensus 670 ~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~--~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~~~~A~ 747 (836)
+| |... +....|....-... ...+.... ....-..++..+...|+.++|...+...++-.+..-.
T Consensus 350 ~f---Yg~l-Aa~~Lg~~~~~~~~---------~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~ 416 (618)
T 1qsa_A 350 GF---YPMV-AAQRIGEEYELKID---------KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQ 416 (618)
T ss_dssp SH---HHHH-HHHHTTCCCCCCCC---------CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred Ch---HHHH-HHHHcCCCCCCCCC---------CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHH
Confidence 33 4321 11122221110000 00000000 0123356677888999999999999988865333334
Q ss_pred hhHHHHHHhcCCHHHHHHH
Q 003249 748 QGLARVHFLKNNKTTAYEE 766 (836)
Q Consensus 748 ~~la~~~~~~g~~~~A~~~ 766 (836)
..++.+....|.++.++..
T Consensus 417 ~~la~~a~~~~~~~~~v~~ 435 (618)
T 1qsa_A 417 AQLARYAFNNQWWDLSVQA 435 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCChHHHHHH
Confidence 5667777778888777643
No 288
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.95 E-value=0.57 Score=41.53 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHcCChhhHHHHHHHHHhhccc--------CCChHHHHHHHhcccccchhhhhcccchhHHHHHHHhh
Q 003249 284 SREDAVELMGYAIEENSPVLAVSCLQVFLRELPD--------CLNDERVVEIFSHANRQHRSIMVGLASFSLYCLLSEVA 355 (836)
Q Consensus 284 ~~~~a~~~~~~a~~~~a~~L~~~c~~~~~~~~~~--------~l~~~~~~~ll~~~~~~~r~~~~~~~~~~l~~lL~~V~ 355 (836)
++++|+.++.+|..++...|...|.+++.+++.. .|+.+++..+|++| ......+ +...+.||.
T Consensus 9 ~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~sd-v~~E~~v-------f~av~~Wv~ 80 (105)
T 2eqx_A 9 QVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG-VPCSQNP-------TEAIEAWIN 80 (105)
T ss_dssp CTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHTC-EETTSCH-------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcCC-CCCHHHH-------HHHHHHHHH
Confidence 5679999999999999999999999999888754 46677888889886 2222122 566788887
Q ss_pred hccC
Q 003249 356 MNLD 359 (836)
Q Consensus 356 ~~~~ 359 (836)
.+..
T Consensus 81 ~d~~ 84 (105)
T 2eqx_A 81 FNKE 84 (105)
T ss_dssp TTHH
T ss_pred cCHH
Confidence 7653
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.71 E-value=2.4 Score=48.23 Aligned_cols=138 Identities=12% Similarity=0.012 Sum_probs=60.5
Q ss_pred HHHhcCCHHHHHHHHHHHHh---cC--------C-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHH
Q 003249 488 SLMTKQNVEAALAEINRILG---FK--------L-ALECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAAS 555 (836)
Q Consensus 488 ~l~~~g~~~eAi~~~~kai~---l~--------P-~~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~ 555 (836)
-+.+.+++++|.+.-++.+. +. + +...|+..+.++...|+..+.+......+.+.|....++ |
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~-r---- 219 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFL-K---- 219 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHH-H----
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHH-H----
Confidence 46778888888877666551 21 1 123455555566667777776666666666555331100 0
Q ss_pred HHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003249 556 QLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSVIYQMLESDA-PKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHA 634 (836)
Q Consensus 556 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~~~~al~~~P-~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l~ 634 (836)
.| .+..|+ ..+.++...--.|+..+.++.|.....++. .
T Consensus 220 --------------ta------------------------~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--f 259 (523)
T 4b4t_S 220 --------------IA------------------------SLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--Y 259 (523)
T ss_dssp --------------HC------------------------CSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--S
T ss_pred --------------HH------------------------hcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--C
Confidence 00 011111 224455555556788999999999999985 3
Q ss_pred CC----C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 003249 635 AS----D---HERLVYEGWILYDTSHCEEGLRKAEESIQMKRS 670 (836)
Q Consensus 635 P~----~---~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~ 670 (836)
|. + ...+|+.|.++.-+++|.+|-+++..|+..-|.
T Consensus 260 P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 260 PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 32 2 445788999999999999999999999987654
No 290
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.47 E-value=14 Score=40.96 Aligned_cols=67 Identities=6% Similarity=0.036 Sum_probs=52.5
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003249 475 DPTLSYPYMYRASSLMTKQNVEAALAEINRILGFKLA----LECLELRFCFFLALEDYQAALCDVQAILTL 541 (836)
Q Consensus 475 dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~----~~~~~~rg~~~~~lg~~~~Ai~d~~~al~l 541 (836)
+..-..++..+|..+.+.|++++|++.|.++...-.. .+.+...-.++...+|+..|...+.++-.+
T Consensus 127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444567889999999999999999999998876543 255555667788889999999988888665
No 291
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.79 E-value=6.7 Score=43.63 Aligned_cols=101 Identities=13% Similarity=0.009 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCchhhhhhHHHHHHHHHHHHHhhhHhHHHHHHhhhhccCcccccchHHH
Q 003249 513 ECLELRFCFFLALEDYQAALCDVQAILTLSPDYRMFEGRVAASQLHMLVREHIDNWTIADCWLQLYDRWSSVDDIGSLSV 592 (836)
Q Consensus 513 ~~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~aL~~ 592 (836)
.++..+|..|.+.||+++|++.|.++...-.....
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~--------------------------------------------- 166 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA--------------------------------------------- 166 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---------------------------------------------
Confidence 45677899999999999999999998765433210
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 593 IYQMLESDAPKGVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASDHE----RLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 593 ~~~al~~~P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l--~P~~~e----al~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
....++....+....+++..|...+++|..+ ...+++ .....|.++...++|.+|-..|-.++.
T Consensus 167 ----------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 167 ----------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp ----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122333334445566777777777776544 222333 234678888899999999999988875
Q ss_pred cc
Q 003249 667 MK 668 (836)
Q Consensus 667 l~ 668 (836)
-.
T Consensus 237 t~ 238 (429)
T 4b4t_R 237 TF 238 (429)
T ss_dssp HS
T ss_pred cC
Confidence 43
No 292
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.43 E-value=14 Score=46.58 Aligned_cols=133 Identities=8% Similarity=-0.049 Sum_probs=81.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cccchHHHHHHHHHhhccccCCCCh
Q 003249 613 LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ-MKRSFEAFFLKAYALADSSQDSSCS 691 (836)
Q Consensus 613 ~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~-l~p~~~a~~~~a~aL~~~~l~~~~~ 691 (836)
.+...+.++-|.+ ....-|.++..-+.+|.++...|++++|..+|++|-. +.+.. ......
T Consensus 821 ~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~--------------~l~~~~ 882 (1139)
T 4fhn_B 821 KLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHT--------------SQFAVL 882 (1139)
T ss_dssp HHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCC--------------CSCSSH
T ss_pred HHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccc--------------hhhhhh
Confidence 3555677765544 4567788888889999999999999999999998842 11110 000000
Q ss_pred hHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC---ch----hHHhhHHHHHHhcCCHHHHH
Q 003249 692 STVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKIR---HT----RAHQGLARVHFLKNNKTTAY 764 (836)
Q Consensus 692 ~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l~---~~----~A~~~la~~~~~~g~~~~A~ 764 (836)
..+.............+.-|.....++.+.|.++.+++.-+.||+.. +. ..+.++=..+...|+|++|+
T Consensus 883 ----~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 ----REFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp ----HHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred ----cccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00111111111110112345666677788888888888888888752 11 24556666777888888887
Q ss_pred HHH
Q 003249 765 EEM 767 (836)
Q Consensus 765 ~~~ 767 (836)
...
T Consensus 959 ~aL 961 (1139)
T 4fhn_B 959 VAL 961 (1139)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 293
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=66.78 E-value=9.1 Score=32.34 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+...|.-.-+.|+|++|+.+|.+||+.
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4666777778889999999999877764
No 294
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=61.65 E-value=62 Score=39.97 Aligned_cols=72 Identities=6% Similarity=-0.206 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--ccchHHHHHH
Q 003249 606 LYFRQSLLLLRLNCPEAAMRSLQLARQH----AASDHERLVYEGWILYDTSHCEEGLRKAEESIQM--KRSFEAFFLK 677 (836)
Q Consensus 606 ~~~~~gl~l~~l~~~~eAl~~~~~Al~l----~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~l--~p~~~a~~~~ 677 (836)
.|.-.-..+.+.|+.++|.+.|....+. -.-|.-.|+.+=..|.+.|+.++|++.|++..+- .|+...|...
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4555556788999999999999775432 2346778999999999999999999999998753 3655444433
No 295
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=57.13 E-value=70 Score=39.51 Aligned_cols=133 Identities=8% Similarity=-0.095 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHH
Q 003249 639 ERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNL 718 (836)
Q Consensus 639 eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nl 718 (836)
..|+.+=..|.+.|+.++|.+.|++.-+.. ..|..|+ ..+||.+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~--------------~kG~~Pd----------------------vvTYNtL 171 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQR--------------QKRKLLT----------------------LDMYNAV 171 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSH--------------HHHTTCC----------------------HHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------------hcCCCCC----------------------HhHHHHH
Confidence 356667778899999999999887654320 0111111 3689999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcC--Cch-hHHhhHHHHHHhcCCH-HHHHHHHHHHHHh--cCCCHHHHHHHHHccCHHH
Q 003249 719 GSVYVDCGQLDLAADCYSNALKI--RHT-RAHQGLARVHFLKNNK-TTAYEEMTKLIKK--ARNNASAYEKRSEYCDREL 792 (836)
Q Consensus 719 G~~y~~~g~~deAi~~y~kAL~l--~~~-~A~~~la~~~~~~g~~-~~A~~~~~kaie~--~p~~a~Ay~~r~~~~~~~~ 792 (836)
=..|.+.|++++|.+.|++-.+- .|+ ..|..+-..+.+.|+. ++|.+-|++-.+. .|| .-.|.-.-.-.+++.
T Consensus 172 I~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD-~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ-ALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSH-HHHHHSCCCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCC-hhhcccccChhhHHH
Confidence 99999999999999999999774 554 4555566677788874 7788888777754 344 233332211123344
Q ss_pred HHHHHHHhHhcCCCCcccc
Q 003249 793 TRADLEMVTQLDPLRVYPY 811 (836)
Q Consensus 793 A~~D~~~Ai~l~P~~~~~y 811 (836)
.+... -+++|.+..+|
T Consensus 251 vL~~V---rkv~P~f~p~~ 266 (1134)
T 3spa_A 251 VLKAV---HKVKPTFSLPP 266 (1134)
T ss_dssp HHHHH---GGGCCCCCCCC
T ss_pred HHHHH---HHhCcccCCCC
Confidence 44444 44477766553
No 296
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=50.89 E-value=39 Score=28.39 Aligned_cols=31 Identities=26% Similarity=0.190 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCchhHHhhHHHHHHhcCCHHHHHHHHHHHH
Q 003249 728 LDLAADCYSNALKIRHTRAHQGLARVHFLKNNKTTAYEEMTKLI 771 (836)
Q Consensus 728 ~deAi~~y~kAL~l~~~~A~~~la~~~~~~g~~~~A~~~~~kai 771 (836)
.+.|++...+|++. .+.|++++|+..|.++|
T Consensus 16 ~~~Ai~lv~~Ave~-------------D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 16 EEMARKYAINAVKA-------------DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHHHHHHHH-------------HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------------HHhccHHHHHHHHHHHH
Confidence 45666666666544 56688888887775544
No 297
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.56 E-value=3.1e+02 Score=30.13 Aligned_cols=132 Identities=14% Similarity=0.019 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--hHH--
Q 003249 605 VLYFRQSLLLLRLNCPEAAMRSLQLARQ---HAASDHE----RLVYEGWILYDTSHCEEGLRKAEESIQMKRS--FEA-- 673 (836)
Q Consensus 605 ~~~~~~gl~l~~l~~~~eAl~~~~~Al~---l~P~~~e----al~~~G~il~~~G~~eeAl~~~~~Ai~l~p~--~~a-- 673 (836)
+.+..+..+++..+++..|...++++.. -.+..++ .+...|.++...++|.+|-.+|.+++.-... .+.
T Consensus 178 e~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~ 257 (445)
T 4b4t_P 178 QFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKW 257 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHH
Confidence 4455666778888899999888888742 2344433 4567888889999999999999999864211 111
Q ss_pred ---HHHHHHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCC
Q 003249 674 ---FFLKAYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVD--CGQLDLAADCYSNALKIR 742 (836)
Q Consensus 674 ---~~~~a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~--~g~~deAi~~y~kAL~l~ 742 (836)
.+.-....--.+.++..+......+.+ .......++..+-.+|.. +.+|+...+.|...|.-+
T Consensus 258 ~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~------~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 258 KPVLSHIVYFLVLSPYGNLQNDLIHKIQND------NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHHHHHHHHHHHSSCSSTTHHHHHSHHHH------SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHhhc------ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 111111111112233332221111211 112234677888888876 458999999988777653
No 298
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=47.36 E-value=46 Score=27.86 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
-+...+.-.-+.|+|++|+.+|.+||+.
T Consensus 13 ~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 13 KYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3556666677777888888877666654
No 299
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=47.27 E-value=52 Score=27.50 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 003249 382 RLLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (836)
Q Consensus 382 ~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~ 411 (836)
+|..+...+.-.-..|+|++|+.+|..||+
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444555555555555555555554443
No 300
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=45.24 E-value=22 Score=30.48 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRIL 506 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai 506 (836)
+..+-.|+..+...|+|++||+...+|.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4566778999999999999999877775
No 301
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=45.02 E-value=23 Score=30.42 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
+-.+.-++..+...|+||+||+|..+|..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34567788899999999999999998875
No 302
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=40.08 E-value=3.2e+02 Score=27.92 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHH
Q 003249 479 SYPYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFF 522 (836)
Q Consensus 479 ~~ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~--~~~~~~rg~~~ 522 (836)
-+-..+++.+.-+.+||++.+....++++.++. .+.-+.+..+|
T Consensus 31 re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAY 76 (261)
T 3ubw_A 31 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAY 76 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHH
Confidence 355566666667777777777777777777664 34444444444
No 303
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=38.96 E-value=5.1e+02 Score=29.88 Aligned_cols=123 Identities=10% Similarity=0.023 Sum_probs=63.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcccchHH--HHHHHHHhhc
Q 003249 610 QSLLLLRLNCPEAAMRSLQLARQHAA-SDHERLVYEGWIL---YDTSHCEEGLRKAEESIQMKRSFEA--FFLKAYALAD 683 (836)
Q Consensus 610 ~gl~l~~l~~~~eAl~~~~~Al~l~P-~~~eal~~~G~il---~~~G~~eeAl~~~~~Ai~l~p~~~a--~~~~a~aL~~ 683 (836)
.++..+..++++.|...+....+..+ ++.+.+...+.+- ...|...++...+.+++...++... +.. ..+|..
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-r~Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRV-RMALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHH-HHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHH-HHHHHC
Confidence 34445555678888888877654322 3333333333332 3344355666777766544443321 221 123321
Q ss_pred cccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 684 SSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 684 ~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
++...+...+...-. .....+...+=+|.++..+|+-++|...|.++.+-
T Consensus 299 -----~d~~~a~~~~~~l~~---~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 299 -----GDRRGLNTWLARLPM---EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp -----TCHHHHHHHHHHSCT---TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred -----CCHHHHHHHHHHccc---cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 222333333333221 11223556677777888888888888888888763
No 304
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=38.00 E-value=70 Score=28.64 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 714 ALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 714 a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
.+...+.-.-..|+|++|+.+|.+|+++
T Consensus 20 ~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 20 DLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3555565666778888888888877764
No 305
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=37.43 E-value=30 Score=28.99 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+..+...+.-.-..|+|++|+.+|.+|++.
T Consensus 13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334556666667788999999999888774
No 306
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=37.10 E-value=84 Score=26.82 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHH
Q 003249 383 LLAFHQLGCVRLLRKEYDEAEHLFEAAV 410 (836)
Q Consensus 383 a~a~~~lG~~~~~~g~y~eAi~~f~~Al 410 (836)
|..+...+.-.-..|+|++|+.+|..||
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQEGI 42 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 307
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=36.75 E-value=3.4e+02 Score=27.28 Aligned_cols=29 Identities=21% Similarity=0.058 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 712 GQALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
+.++|.=-.-|.-+++.++|+..-++|+.
T Consensus 176 GLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 176 GLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555433345567899999887777654
No 308
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=36.27 E-value=1.4e+02 Score=27.90 Aligned_cols=61 Identities=10% Similarity=-0.048 Sum_probs=46.5
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 606 LYFRQSL-LLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 606 ~~~~~gl-~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
-|+.+++ .+...|+-++=-..+...+.-+|-.|+.++.+|.+|.+.|+..+|-+...+|.+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3555555 345677776666666666677888899999999999999999999998888875
No 309
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.92 E-value=4.7e+02 Score=28.61 Aligned_cols=105 Identities=8% Similarity=-0.071 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccchHHHHHH
Q 003249 604 GVLYFRQSLLLLRLNCPEAAMRSLQLARQH--AASD----HERLVYEGWILYDTSHCEEGLRKAEESIQMKRSFEAFFLK 677 (836)
Q Consensus 604 ~~~~~~~gl~l~~l~~~~eAl~~~~~Al~l--~P~~----~eal~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~~a~~~~ 677 (836)
+.....++.++...|++.+|...++....- ...+ .+.+.....++...|++..|-..++++-..
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~---------- 206 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKK---------- 206 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------
Confidence 345567888999999999999998887632 1112 467777888899999999998877776310
Q ss_pred HHHhhccccCCCChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 678 AYALADSSQDSSCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 678 a~aL~~~~l~~~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+...++...-.+.-+...|..+...++|.+|-.+|..+++-
T Consensus 207 -----------------------~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 207 -----------------------TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp -----------------------HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -----------------------hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 00000000012345677788889999999999999999874
No 310
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=35.78 E-value=23 Score=40.30 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=54.7
Q ss_pred EEEEeCCeEEehhHHHHhhcCHHHHHhhcC-----CCCcCCcceeEecCCCCCHHHHHHHHHhhcc-CcCCCCCHH-HHH
Q 003249 184 VVFRIHEEKIECDRQKFAALSAPFSAMLNG-----SFMESLCEDIDLSENNISPSGLRIISDFSVT-GSLNGVTPN-LLL 256 (836)
Q Consensus 184 V~~~v~~~~~~aHr~vLaa~S~yF~amf~~-----~~~Es~~~~I~l~~~~is~~~~~~ll~f~Yt-g~l~~~~~~-~v~ 256 (836)
|++-|||+.|...+..|... -.+|+.. ........++-+. =+|..|+.+|+|+.| |++. .+.+ .+.
T Consensus 54 v~lNVgG~~f~t~~~tL~~~---p~s~l~~~~~~~~~~~~~~~~~f~D---R~~~~F~~IL~~~r~~g~l~-~p~~~~~~ 126 (514)
T 2r9r_B 54 VVINISGLRFETQLKTLAQF---PETLLGDPKKRMRYFDPLRNEYFFD---RNRPSFDAILYYYQSGGRLR-RPVNVPLD 126 (514)
T ss_dssp EEEEETTEEEEEEHHHHTTS---TTSTTTCHHHHGGGEETTTTEEEEC---SCHHHHHHHHHHHHHTSCCC-CCTTSCHH
T ss_pred EEEEeCCEEEEecHHHHhcC---CCCcccccccCCcccCCCCCCEEEc---CChHHHHHHHHHHhcCCccc-cCCcccHH
Confidence 88899999999999999643 2333332 1112344667775 799999999999999 9998 5544 344
Q ss_pred HHHHHHHHHhHH
Q 003249 257 EILIFANKFCCE 268 (836)
Q Consensus 257 ~lL~aA~~~c~~ 268 (836)
.++.=|++|.++
T Consensus 127 ~~~~E~~f~~i~ 138 (514)
T 2r9r_B 127 IFSEEIRFYELG 138 (514)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHhcCCC
Confidence 566666666553
No 311
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=33.87 E-value=37 Score=29.14 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
..+...+.-.-..|+|++|+.+|.+|++.
T Consensus 16 i~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 16 VAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34566677777888999999999888764
No 312
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=33.69 E-value=54 Score=35.20 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHcC-------CchhHHhhHHHHHHhcCCHHHHHHHHHHH
Q 003249 712 GQALNNLGSVYVDCG--QLDLAADCYSNALKI-------RHTRAHQGLARVHFLKNNKTTAYEEMTKL 770 (836)
Q Consensus 712 ~~a~~nlG~~y~~~g--~~deAi~~y~kAL~l-------~~~~A~~~la~~~~~~g~~~~A~~~~~ka 770 (836)
+.|+-|||..-.-.- ....++..|.+|+.. .+.+.|..+|--+++.|++.+|+..+..|
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 455566664422211 112267777777765 24567778888888888888887666554
No 313
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=33.69 E-value=7.4e+02 Score=30.22 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHh---c--c--chhhHhhHHHHHHhcCCHHHHHHHHHHhHhc
Q 003249 379 DRQRLLAFHQLGCVRLLRKEYDEAEHLFEAAVN---A--G--HIYSIAGLARLGYIKGHKLWAYEKLNSVISS 444 (836)
Q Consensus 379 ~~~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~---l--~--~~~a~~~la~~~~~~G~~~~A~~~~~~ai~~ 444 (836)
+|.+..+...+|.++. |+.++++..+.+-+. - . ...+..++|.++...++ +++..+...+..
T Consensus 372 ~~~k~sA~aSLGlIh~--g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~ 440 (963)
T 4ady_A 372 NWAKFTATASLGVIHK--GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVE 440 (963)
T ss_dssp THHHHHHHHHHHHHTS--SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhcc--CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcC
Confidence 4678888889998775 666677777777664 1 1 35688888888765553 577766665543
No 314
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=33.08 E-value=43 Score=28.31 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 715 LNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 715 ~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
+...+.-.-..|+|++|+.+|.+|++.
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455557789999999999888875
No 315
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=32.99 E-value=52 Score=26.97 Aligned_cols=31 Identities=6% Similarity=0.134 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Q 003249 483 MYRASSLMTKQNVEAALAEINRILGFKLALE 513 (836)
Q Consensus 483 ~~rg~~l~~~g~~~eAi~~~~kai~l~P~~~ 513 (836)
..+|..+...|++++|+..|-+||..-|+|.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 3467777777888888888888888777764
No 316
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=32.93 E-value=1.2e+02 Score=27.07 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.9
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 003249 648 LYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 648 l~~~G~~eeAl~~~~~Ai~ 666 (836)
.-..|+|++|+..|..||+
T Consensus 28 ~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 28 EDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3466999999999999986
No 317
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.41 E-value=70 Score=28.63 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003249 713 QALNNLGSVYVDCGQLDLAADCYSNALK 740 (836)
Q Consensus 713 ~a~~nlG~~y~~~g~~deAi~~y~kAL~ 740 (836)
-.+.|.|...-+.|+-++|++.|+++|+
T Consensus 23 F~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 23 FLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 3467777777778888888888877654
No 318
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=27.86 E-value=62 Score=27.30 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=17.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 003249 644 EGWILYDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 644 ~G~il~~~G~~eeAl~~~~~Ai~ 666 (836)
++.-.-..|+|++|+..|..||+
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444577999999999999885
No 319
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=26.45 E-value=82 Score=34.48 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=29.1
Q ss_pred HHHHHHHHHcC-------CchhHHhhHHHHHHhcCCHHHHHHHHHHH
Q 003249 731 AADCYSNALKI-------RHTRAHQGLARVHFLKNNKTTAYEEMTKL 770 (836)
Q Consensus 731 Ai~~y~kAL~l-------~~~~A~~~la~~~~~~g~~~~A~~~~~ka 770 (836)
++..|.+|+.. .+.+.|..+|-.+++.+++.+|+..+..|
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHH
Confidence 67777777765 24577788888888888888887666554
No 320
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=26.19 E-value=1.8e+02 Score=22.58 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=26.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 003249 611 SLLLLRLNCPEAAMRSLQLARQHAASDHER-LVYEGWILYDTSHCEEGL 658 (836)
Q Consensus 611 gl~l~~l~~~~eAl~~~~~Al~l~P~~~ea-l~~~G~il~~~G~~eeAl 658 (836)
++.-....+++||....+ -+...++..|+ -.-|...+..+|+|++|+
T Consensus 13 AL~~TG~HcH~EA~tIA~-~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 13 ALAGTGHHCHQEAASIAD-WLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHTTTCHHHHHHHHH-HHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHccchHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 444456778888876544 45666665554 455777889999999996
No 321
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=25.75 E-value=78 Score=26.38 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 003249 381 QRLLAFHQLGCVRLLRKEYDEAEHLFEAAVN 411 (836)
Q Consensus 381 ~~a~a~~~lG~~~~~~g~y~eAi~~f~~Al~ 411 (836)
++|..+...+.-.-..|+|++|+.+|..|++
T Consensus 11 ~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 11 TKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666667677788889999888888876
No 322
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=25.58 E-value=70 Score=26.20 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccch
Q 003249 642 VYEGWILYDTSHCEEGLRKAEESIQMKRSF 671 (836)
Q Consensus 642 ~~~G~il~~~G~~eeAl~~~~~Ai~l~p~~ 671 (836)
+.+|..+...|++++|+..|-+||..-|..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 457889999999999999999999887654
No 323
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=23.42 E-value=1.3e+02 Score=32.47 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 003249 516 ELRFCFFLALEDYQAALCDVQAILT 540 (836)
Q Consensus 516 ~~rg~~~~~lg~~~~Ai~d~~~al~ 540 (836)
...|..+.+.+++.+|++.+-.|-.
T Consensus 300 tylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 300 TYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcchHHHHHHHHHHHHH
Confidence 3344455555555555555554443
No 324
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.39 E-value=2.1e+02 Score=34.96 Aligned_cols=110 Identities=10% Similarity=-0.055 Sum_probs=68.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcccchHHHHHHHHHhhccccCC
Q 003249 610 QSLLLLRLNCPEAAMRSLQLARQHAASDHERLVYEGWILYDTSHCEEGLRKAEESI-QMKRSFEAFFLKAYALADSSQDS 688 (836)
Q Consensus 610 ~gl~l~~l~~~~eAl~~~~~Al~l~P~~~eal~~~G~il~~~G~~eeAl~~~~~Ai-~l~p~~~a~~~~a~aL~~~~l~~ 688 (836)
...-+...|.++-|. .....-|.++-.-|.+|.++.+.|++++|..+|++|- .+..... ..
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~--------------~~ 877 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS--------------QF 877 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCC--------------SC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcc--------------cc
Confidence 344566778877543 4567888888888999999999999999999999874 2211100 00
Q ss_pred CChhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003249 689 SCSSTVVSLLEDALKCPSDRLRKGQALNNLGSVYVDCGQLDLAADCYSNALKI 741 (836)
Q Consensus 689 ~~~~~~i~~l~~Al~~~~~~~~~~~a~~nlG~~y~~~g~~deAi~~y~kAL~l 741 (836)
........++.. .+ ...-...=|.+...++.+.+-++-+++.-+.||+.
T Consensus 878 ~~~~~~~~ll~~-~e---~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 878 AVLREFQEIAEK-YH---HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp GGGHHHHHHHHH-TT---TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cchhhhhhccCc-cc---ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 000000111110 00 00001234677788888888899998888888875
No 325
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=23.39 E-value=1e+02 Score=33.78 Aligned_cols=60 Identities=18% Similarity=0.059 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHcC-------CchhHHhhHHHHHHhcCCHHHHHHHHHHHH
Q 003249 712 GQALNNLGSVYVDC--GQLDLAADCYSNALKI-------RHTRAHQGLARVHFLKNNKTTAYEEMTKLI 771 (836)
Q Consensus 712 ~~a~~nlG~~y~~~--g~~deAi~~y~kAL~l-------~~~~A~~~la~~~~~~g~~~~A~~~~~kai 771 (836)
+.|+.|||..-.-. ...+.+++.|++|+.. .+.+.|..+|--+++.+++.+|+..+..+=
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhh
Confidence 45566666543221 1223466777777775 245677888888888888888887776653
No 326
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.20 E-value=2.6e+02 Score=26.45 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHH--------HhcCCHHHHHHHHHHHHh
Q 003249 607 YFRQSLLLLRLNCPEAAMRSLQLARQHAASD-HERLVYEGWIL--------YDTSHCEEGLRKAEESIQ 666 (836)
Q Consensus 607 ~~~~gl~l~~l~~~~eAl~~~~~Al~l~P~~-~eal~~~G~il--------~~~G~~eeAl~~~~~Ai~ 666 (836)
-+..|+.+.+.|+|=+|-+.++.++.-.+.. .+.-+..|.|. ...|+...|...+.+|+.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3667888899999999999999999987665 23444445544 678999999999999986
No 327
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=22.19 E-value=6.8e+02 Score=26.07 Aligned_cols=64 Identities=14% Similarity=-0.112 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------H---cCCCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 003249 601 APKGVLYFRQSLLLLRLNCPEAAMRSLQLAR----------------Q---HAASDHERLVYEGWIL-YDTSHCEEGLRK 660 (836)
Q Consensus 601 P~~~~~~~~~gl~l~~l~~~~eAl~~~~~Al----------------~---l~P~~~eal~~~G~il-~~~G~~eeAl~~ 660 (836)
-+++.+|...|..+.+.+++.+|..+|-..- + -.|.+++.+..|+.+- .-+|+...|...
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~ 210 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHES 210 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3688999999999999999999998774211 1 2344455555555433 355666655555
Q ss_pred HHHH
Q 003249 661 AEES 664 (836)
Q Consensus 661 ~~~A 664 (836)
|+.-
T Consensus 211 ~~~f 214 (312)
T 2wpv_A 211 KDIF 214 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 328
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=21.94 E-value=1.4e+02 Score=32.80 Aligned_cols=43 Identities=28% Similarity=0.282 Sum_probs=25.3
Q ss_pred HHHHHHHHHhc-----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003249 464 RWEDLDKATAL-----DPTLSYPYMYRASSLMTKQNVEAALAEINRIL 506 (836)
Q Consensus 464 Ai~d~~kAi~l-----dP~~~~ay~~rg~~l~~~g~~~eAi~~~~kai 506 (836)
++..|.+||.. +-...++|.++|..+++.+++.||+..+..|-
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa 345 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTA 345 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHH
Confidence 34444554442 34456667777777777777777776665553
No 329
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=21.92 E-value=6.4e+02 Score=25.66 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH-----HcCCCCHHHH---HHHHHHHHh-cCCHHHHHHHHHHHH
Q 003249 620 PEAAMRSLQLAR-----QHAASDHERL---VYEGWILYD-TSHCEEGLRKAEESI 665 (836)
Q Consensus 620 ~~eAl~~~~~Al-----~l~P~~~eal---~~~G~il~~-~G~~eeAl~~~~~Ai 665 (836)
.+.|+..|+.|. .+.|.+|-.+ .|....|++ +++.++|....++|+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356677777776 4778888653 223333443 799999998777776
No 330
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.52 E-value=6.4e+02 Score=25.47 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hHHHHHHHHHHH
Q 003249 481 PYMYRASSLMTKQNVEAALAEINRILGFKLA--LECLELRFCFFL 523 (836)
Q Consensus 481 ay~~rg~~l~~~g~~~eAi~~~~kai~l~P~--~~~~~~rg~~~~ 523 (836)
-..+++.+.-+.+||++.+....++++.++. .+.-+.+..+|.
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYK 50 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYK 50 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHH
Confidence 4566777888999999999999999999885 344444555543
No 331
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=21.27 E-value=6.5e+02 Score=25.43 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCch
Q 003249 514 CLELRFCFFLALEDYQAALCDVQAILTLSPDYR 546 (836)
Q Consensus 514 ~~~~rg~~~~~lg~~~~Ai~d~~~al~l~P~~~ 546 (836)
.+..++.+..+.++|++.+..-.++++.+|...
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt 38 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLS 38 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCC
Confidence 345578888999999999999999999998753
Done!