Query 003250
Match_columns 836
No_of_seqs 384 out of 1548
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 19:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 5.7E-72 1.2E-76 578.0 18.0 205 161-368 1-222 (229)
2 PF08670 MEKHLA: MEKHLA domain 100.0 2E-59 4.3E-64 456.4 16.8 148 688-836 1-148 (148)
3 PF01852 START: START domain; 99.7 7E-17 1.5E-21 163.7 8.4 189 166-361 1-191 (206)
4 KOG0483 Transcription factor H 99.6 2E-16 4.3E-21 161.7 8.0 113 25-145 49-164 (198)
5 smart00234 START in StAR and p 99.6 5.4E-15 1.2E-19 150.3 14.7 189 167-364 2-194 (206)
6 KOG0489 Transcription factor z 99.5 5.8E-15 1.3E-19 157.7 2.7 64 24-91 157-220 (261)
7 KOG0487 Transcription factor A 99.5 1.3E-14 2.9E-19 156.3 4.3 67 25-95 234-300 (308)
8 KOG0843 Transcription factor E 99.5 2.1E-14 4.5E-19 142.6 5.0 64 25-92 101-164 (197)
9 KOG0488 Transcription factor B 99.5 2.6E-14 5.7E-19 155.7 4.2 64 24-91 170-233 (309)
10 KOG0842 Transcription factor t 99.4 7.3E-14 1.6E-18 150.6 5.4 68 25-96 152-219 (307)
11 KOG0484 Transcription factor P 99.4 7.9E-14 1.7E-18 127.3 2.3 62 24-89 15-76 (125)
12 KOG0850 Transcription factor D 99.4 2.1E-13 4.5E-18 140.1 4.7 64 23-90 119-182 (245)
13 KOG0492 Transcription factor M 99.4 5.6E-13 1.2E-17 134.8 5.8 66 22-91 140-205 (246)
14 PF00046 Homeobox: Homeobox do 99.4 3.2E-13 7E-18 111.3 2.7 57 27-87 1-57 (57)
15 KOG0485 Transcription factor N 99.3 4.1E-13 8.9E-18 136.5 3.6 61 25-89 103-163 (268)
16 KOG0848 Transcription factor C 99.3 3.3E-13 7.1E-18 140.8 2.4 57 30-90 203-259 (317)
17 KOG0494 Transcription factor C 99.3 1E-12 2.2E-17 136.5 4.5 58 30-91 145-202 (332)
18 KOG2251 Homeobox transcription 99.3 1.2E-12 2.6E-17 134.1 4.6 65 23-91 34-98 (228)
19 KOG0493 Transcription factor E 99.3 1.8E-12 3.8E-17 134.8 3.6 60 24-87 244-303 (342)
20 cd00177 START Lipid-binding ST 99.2 1.1E-10 2.5E-15 115.6 10.9 165 170-347 2-169 (193)
21 COG5576 Homeodomain-containing 99.2 2.9E-11 6.2E-16 120.1 5.6 65 23-91 48-112 (156)
22 smart00389 HOX Homeodomain. DN 99.2 1.5E-11 3.2E-16 100.5 2.7 55 28-86 2-56 (56)
23 cd00086 homeodomain Homeodomai 99.1 2.4E-11 5.2E-16 99.9 3.4 56 28-87 2-57 (59)
24 TIGR01565 homeo_ZF_HD homeobox 99.1 5.9E-11 1.3E-15 99.4 5.3 52 27-82 2-57 (58)
25 KOG0847 Transcription factor, 99.1 2E-11 4.3E-16 124.4 2.3 65 23-91 164-228 (288)
26 KOG0491 Transcription factor B 99.1 1E-11 2.3E-16 121.9 -1.4 64 26-93 100-163 (194)
27 KOG0844 Transcription factor E 99.1 4.3E-11 9.4E-16 126.8 2.4 63 27-93 182-244 (408)
28 KOG4577 Transcription factor L 99.0 1.8E-10 3.9E-15 121.5 4.8 64 23-90 164-227 (383)
29 KOG3802 Transcription factor O 99.0 2.2E-10 4.7E-15 126.4 4.6 62 25-90 293-354 (398)
30 KOG0486 Transcription factor P 99.0 2.5E-10 5.4E-15 122.0 4.3 64 25-92 111-174 (351)
31 cd08904 START_STARD6-like Lipi 98.9 8.1E-09 1.8E-13 107.0 13.3 170 165-348 4-180 (204)
32 cd08867 START_STARD4_5_6-like 98.9 1.5E-08 3.2E-13 104.4 12.7 169 164-348 3-182 (206)
33 cd08871 START_STARD10-like Lip 98.8 2.8E-08 6E-13 103.5 12.0 166 168-349 8-178 (222)
34 cd08868 START_STARD1_3_like Ch 98.8 4.9E-08 1.1E-12 100.7 11.9 170 165-349 7-183 (208)
35 KOG0490 Transcription factor, 98.7 7.4E-09 1.6E-13 107.2 3.9 61 25-89 59-119 (235)
36 cd08903 START_STARD5-like Lipi 98.7 1.1E-07 2.3E-12 98.7 11.8 169 165-349 4-183 (208)
37 cd08909 START_STARD13-like C-t 98.6 3.1E-07 6.7E-12 95.4 10.6 128 211-349 52-181 (205)
38 cd08905 START_STARD1-like Chol 98.6 2.5E-07 5.4E-12 96.1 9.7 170 165-349 7-184 (209)
39 cd08869 START_RhoGAP C-termina 98.5 4E-07 8.6E-12 93.7 10.9 166 169-349 4-173 (197)
40 PLN00188 enhanced disease resi 98.5 2.6E-07 5.5E-12 109.3 8.9 129 211-347 227-365 (719)
41 KOG1168 Transcription factor A 98.5 1.1E-07 2.5E-12 100.7 4.8 68 18-89 301-368 (385)
42 KOG0849 Transcription factor P 98.4 1.4E-07 3E-12 105.4 3.7 62 24-89 174-235 (354)
43 cd08906 START_STARD3-like Chol 98.3 6.2E-06 1.3E-10 85.9 11.3 170 165-349 7-184 (209)
44 cd08902 START_STARD4-like Lipi 98.2 7.3E-06 1.6E-10 84.7 10.0 166 165-345 4-176 (202)
45 cd08908 START_STARD12-like C-t 98.1 2.4E-05 5.3E-10 81.4 11.1 167 167-349 10-180 (204)
46 KOG0775 Transcription factor S 98.0 4.4E-06 9.5E-11 88.7 3.7 51 33-87 183-233 (304)
47 cd08874 START_STARD9-like C-te 98.0 2.6E-05 5.6E-10 81.2 8.7 127 214-349 48-182 (205)
48 cd08907 START_STARD8-like C-te 97.8 0.00027 5.8E-09 73.5 12.6 168 166-349 9-181 (205)
49 PF13426 PAS_9: PAS domain; PD 97.7 0.00031 6.8E-09 61.5 9.5 101 728-832 1-101 (104)
50 cd08872 START_STARD11-like Cer 97.7 0.00054 1.2E-08 72.8 12.9 167 166-343 6-197 (235)
51 cd08910 START_STARD2-like Lipi 97.5 0.00022 4.8E-09 74.2 7.7 129 209-349 47-182 (207)
52 cd08873 START_STARD14_15-like 97.5 0.00038 8.2E-09 74.1 9.2 120 213-341 79-203 (235)
53 KOG0774 Transcription factor P 97.5 5.9E-05 1.3E-09 79.6 2.9 58 26-87 188-248 (334)
54 cd08876 START_1 Uncharacterize 97.2 0.00074 1.6E-08 68.5 7.5 135 211-355 41-179 (195)
55 cd08870 START_STARD2_7-like Li 97.2 0.003 6.5E-08 65.6 11.8 169 170-349 6-184 (209)
56 PF05920 Homeobox_KN: Homeobox 97.2 7.9E-05 1.7E-09 58.3 -0.2 34 47-84 7-40 (40)
57 cd08877 START_2 Uncharacterize 97.2 0.0021 4.5E-08 66.9 10.1 175 165-349 4-190 (215)
58 cd08913 START_STARD14-like Lip 97.2 0.0033 7.1E-08 67.2 11.7 122 214-349 84-214 (240)
59 cd08914 START_STARD15-like Lip 97.1 0.0033 7.2E-08 67.0 10.6 131 212-354 79-215 (236)
60 KOG0490 Transcription factor, 97.0 0.00046 9.9E-09 71.7 3.7 62 25-90 152-213 (235)
61 cd08911 START_STARD7-like Lipi 97.0 0.0019 4.1E-08 67.1 7.5 129 211-349 45-182 (207)
62 KOG2252 CCAAT displacement pro 96.9 0.00067 1.5E-08 78.5 3.7 63 20-86 414-476 (558)
63 PF08448 PAS_4: PAS fold; Int 96.0 0.043 9.4E-07 48.5 9.1 104 726-834 3-106 (110)
64 PF00989 PAS: PAS fold; Inter 95.7 0.14 3E-06 45.4 11.1 105 723-831 6-111 (113)
65 cd08904 START_STARD6-like Lipi 95.5 0.66 1.4E-05 48.7 16.5 174 404-670 20-203 (204)
66 KOG1146 Homeobox protein [Gene 95.2 0.011 2.4E-07 74.3 2.7 62 26-91 903-964 (1406)
67 cd08869 START_RhoGAP C-termina 94.8 3.2 7E-05 42.9 19.2 57 404-476 17-73 (197)
68 cd08871 START_STARD10-like Lip 94.6 2.6 5.7E-05 44.1 18.1 65 394-476 13-79 (222)
69 PRK13557 histidine kinase; Pro 94.3 0.32 7E-06 55.7 11.6 112 719-832 30-143 (540)
70 cd08907 START_STARD8-like C-te 93.7 7.7 0.00017 41.0 19.0 58 403-476 24-81 (205)
71 cd08874 START_STARD9-like C-te 91.8 1.1 2.4E-05 47.0 10.1 56 403-476 19-76 (205)
72 KOG0773 Transcription factor M 91.4 0.13 2.8E-06 57.5 2.7 57 27-87 240-299 (342)
73 PRK13559 hypothetical protein; 91.3 1.2 2.5E-05 49.0 10.2 112 719-832 43-156 (361)
74 PRK09413 IS2 repressor TnpA; R 91.0 0.44 9.5E-06 45.7 5.6 94 28-134 8-102 (121)
75 cd08864 SRPBCC_DUF3074 DUF3074 90.7 0.33 7.2E-06 51.0 4.8 111 233-349 65-184 (208)
76 cd08877 START_2 Uncharacterize 90.4 15 0.00032 38.4 16.7 72 385-476 4-77 (215)
77 cd08875 START_ArGLABRA2_like C 90.2 2.5 5.4E-05 45.3 10.8 163 384-585 3-180 (229)
78 cd00177 START Lipid-binding ST 89.9 6.8 0.00015 38.7 13.3 126 406-585 15-148 (193)
79 PF11569 Homez: Homeodomain le 89.8 0.093 2E-06 44.2 -0.1 42 37-82 9-50 (56)
80 TIGR00229 sensory_box PAS doma 89.7 5.8 0.00013 32.2 10.7 106 722-832 6-113 (124)
81 cd08868 START_STARD1_3_like Ch 89.2 21 0.00046 36.9 16.8 57 403-476 21-80 (208)
82 cd00130 PAS PAS domain; PAS mo 88.0 7.9 0.00017 29.5 9.9 97 729-830 3-100 (103)
83 KOG2761 START domain-containin 88.0 0.97 2.1E-05 47.9 5.8 110 221-339 64-183 (219)
84 PRK11091 aerobic respiration c 87.3 3.2 7E-05 50.9 10.8 106 723-832 160-265 (779)
85 PF00170 bZIP_1: bZIP transcri 86.6 2.7 5.8E-05 35.9 6.8 45 82-126 19-63 (64)
86 cd08902 START_STARD4-like Lipi 86.3 49 0.0011 35.1 18.3 57 403-476 20-78 (202)
87 smart00234 START in StAR and p 85.7 13 0.00028 37.9 12.6 132 405-587 18-158 (206)
88 cd08909 START_STARD13-like C-t 85.7 13 0.00029 39.2 12.8 129 406-586 27-160 (205)
89 TIGR02938 nifL_nitrog nitrogen 84.9 3.5 7.6E-05 46.3 8.8 107 722-832 8-114 (494)
90 KOG4005 Transcription factor X 83.1 3.3 7.1E-05 44.3 6.9 58 79-136 82-144 (292)
91 cd08908 START_STARD12-like C-t 82.1 66 0.0014 34.0 16.2 55 406-476 27-81 (204)
92 KOG4196 bZIP transcription fac 81.9 5.2 0.00011 39.3 7.2 85 31-135 22-106 (135)
93 cd08913 START_STARD14-like Lip 81.4 18 0.0004 39.0 12.0 55 403-476 56-112 (240)
94 cd08906 START_STARD3-like Chol 81.3 76 0.0016 33.3 17.7 71 387-476 8-81 (209)
95 smart00340 HALZ homeobox assoc 80.6 3 6.5E-05 33.3 4.1 27 99-125 8-34 (44)
96 TIGR02040 PpsR-CrtJ transcript 80.2 7.7 0.00017 44.3 9.3 91 722-817 256-347 (442)
97 PRK13558 bacterio-opsin activa 79.7 10 0.00022 45.8 10.5 106 726-833 156-262 (665)
98 cd08911 START_STARD7-like Lipi 79.1 87 0.0019 32.7 16.4 57 404-476 19-77 (207)
99 TIGR02040 PpsR-CrtJ transcript 78.8 13 0.00027 42.7 10.5 78 726-805 141-218 (442)
100 PF13188 PAS_8: PAS domain; PD 77.8 2.9 6.3E-05 34.5 3.7 39 721-765 3-42 (64)
101 cd08873 START_STARD14_15-like 76.5 3.6 7.7E-05 44.3 4.8 54 404-476 53-108 (235)
102 cd08876 START_1 Uncharacterize 76.4 4.6 0.0001 40.9 5.4 61 399-476 9-72 (195)
103 PRK11073 glnL nitrogen regulat 76.1 8.3 0.00018 42.0 7.7 93 719-817 8-100 (348)
104 smart00338 BRLZ basic region l 75.2 11 0.00024 32.2 6.6 34 101-134 31-64 (65)
105 PRK11359 cyclic-di-GMP phospho 74.8 17 0.00037 44.4 10.7 104 726-833 144-248 (799)
106 cd08870 START_STARD2_7-like Li 72.3 7.3 0.00016 40.6 5.8 58 405-476 21-82 (209)
107 cd08903 START_STARD5-like Lipi 71.1 6.7 0.00014 41.0 5.2 56 404-476 20-79 (208)
108 PRK13560 hypothetical protein; 70.8 24 0.00052 42.8 10.6 104 726-832 212-316 (807)
109 PF01852 START: START domain; 69.9 51 0.0011 33.4 11.2 148 388-585 2-156 (206)
110 PF02183 HALZ: Homeobox associ 69.7 14 0.00031 29.9 5.6 39 96-134 5-43 (45)
111 KOG3623 Homeobox transcription 68.4 3.1 6.8E-05 50.5 2.2 48 38-89 568-615 (1007)
112 cd08914 START_STARD15-like Lip 67.4 8 0.00017 41.7 4.9 55 403-476 53-109 (236)
113 cd08910 START_STARD2-like Lipi 66.4 10 0.00022 39.6 5.4 66 395-476 12-81 (207)
114 TIGR00219 mreC rod shape-deter 65.4 10 0.00022 41.9 5.3 36 100-135 70-109 (283)
115 PRK09776 putative diguanylate 65.2 25 0.00053 44.8 9.5 107 719-829 283-391 (1092)
116 PF04218 CENP-B_N: CENP-B N-te 65.1 5.1 0.00011 33.2 2.3 47 27-82 1-47 (53)
117 PF08447 PAS_3: PAS fold; Int 64.0 40 0.00087 28.9 7.9 82 743-827 2-88 (91)
118 cd08905 START_STARD1-like Chol 62.6 2E+02 0.0044 30.0 16.7 72 386-476 7-81 (209)
119 PF02183 HALZ: Homeobox associ 60.9 15 0.00032 29.9 4.1 36 101-136 3-38 (45)
120 PRK13922 rod shape-determining 60.5 15 0.00033 39.8 5.6 38 98-135 71-111 (276)
121 PRK10060 RNase II stability mo 59.7 38 0.00083 41.4 9.4 82 726-809 119-201 (663)
122 KOG4571 Activating transcripti 58.7 20 0.00044 39.6 6.0 39 85-123 244-282 (294)
123 PF06005 DUF904: Protein of un 57.4 26 0.00055 31.2 5.4 35 100-134 22-56 (72)
124 PRK00888 ftsB cell division pr 53.7 26 0.00056 33.2 5.2 45 73-117 16-62 (105)
125 KOG3119 Basic region leucine z 53.4 26 0.00056 38.5 5.9 23 112-134 224-246 (269)
126 PF07716 bZIP_2: Basic region 51.6 41 0.0009 27.8 5.5 21 113-133 28-48 (54)
127 smart00338 BRLZ basic region l 51.4 82 0.0018 26.8 7.5 45 82-126 19-63 (65)
128 PRK11360 sensory histidine kin 51.0 92 0.002 35.9 10.2 103 724-832 268-370 (607)
129 PRK09776 putative diguanylate 50.4 80 0.0017 40.3 10.4 102 726-832 544-650 (1092)
130 PF06156 DUF972: Protein of un 50.1 42 0.00092 32.0 6.0 38 99-136 18-55 (107)
131 KOG4343 bZIP transcription fac 49.7 37 0.0008 40.5 6.6 31 106-136 305-335 (655)
132 PF00170 bZIP_1: bZIP transcri 48.5 79 0.0017 26.9 6.9 36 98-133 28-63 (64)
133 KOG3119 Basic region leucine z 47.5 46 0.001 36.5 6.7 35 101-135 220-254 (269)
134 PRK13169 DNA replication intia 46.5 53 0.0011 31.6 6.0 38 99-136 18-55 (110)
135 cd08872 START_STARD11-like Cer 46.0 57 0.0012 35.0 7.0 64 398-476 18-84 (235)
136 KOG4343 bZIP transcription fac 45.3 29 0.00063 41.3 4.9 40 91-130 304-343 (655)
137 PF01166 TSC22: TSC-22/dip/bun 43.9 34 0.00074 29.4 3.8 33 102-134 13-45 (59)
138 cd05018 CoxG Carbon monoxide d 43.0 92 0.002 29.1 7.2 109 215-343 5-113 (144)
139 COG3074 Uncharacterized protei 43.0 64 0.0014 28.8 5.4 42 93-134 22-63 (79)
140 PRK11359 cyclic-di-GMP phospho 42.1 94 0.002 38.1 9.0 104 719-827 13-120 (799)
141 KOG0709 CREB/ATF family transc 41.8 58 0.0013 38.3 6.6 91 31-137 219-313 (472)
142 COG4026 Uncharacterized protei 41.4 93 0.002 33.5 7.4 48 90-137 143-190 (290)
143 PRK15422 septal ring assembly 41.2 80 0.0017 28.8 5.9 43 92-134 21-63 (79)
144 cd08867 START_STARD4_5_6-like 40.4 79 0.0017 32.7 6.9 67 387-476 9-79 (206)
145 PRK10884 SH3 domain-containing 40.0 77 0.0017 33.6 6.7 39 96-134 132-170 (206)
146 PF07407 Seadorna_VP6: Seadorn 39.9 39 0.00085 38.0 4.6 30 560-589 337-376 (420)
147 TIGR02966 phoR_proteo phosphat 38.0 88 0.0019 33.1 6.9 49 720-770 8-56 (333)
148 PF07716 bZIP_2: Basic region 37.7 2E+02 0.0044 23.7 7.6 27 106-132 28-54 (54)
149 KOG4196 bZIP transcription fac 37.3 1.3E+02 0.0029 29.8 7.2 42 83-124 68-109 (135)
150 smart00091 PAS PAS domain. PAS 36.5 1.1E+02 0.0023 21.2 5.2 53 727-781 10-62 (67)
151 TIGR03752 conj_TIGR03752 integ 35.8 1E+02 0.0023 36.5 7.4 57 32-113 41-97 (472)
152 KOG4005 Transcription factor X 34.4 81 0.0018 34.2 5.7 47 88-134 103-149 (292)
153 PF13596 PAS_10: PAS domain; P 34.4 1.2E+02 0.0026 27.4 6.3 98 726-832 7-104 (106)
154 PLN00188 enhanced disease resi 34.0 2.6E+02 0.0057 35.0 10.6 96 456-586 236-341 (719)
155 cd08860 TcmN_ARO-CYC_like N-te 33.9 2.2E+02 0.0048 28.1 8.5 107 215-343 5-113 (146)
156 PF14197 Cep57_CLD_2: Centroso 33.1 1.5E+02 0.0033 26.2 6.3 34 101-134 31-64 (69)
157 cd07819 SRPBCC_2 Ligand-bindin 32.9 2.8E+02 0.0061 25.6 8.8 109 215-344 6-114 (140)
158 PF06005 DUF904: Protein of un 32.9 1.6E+02 0.0035 26.2 6.5 41 92-132 21-61 (72)
159 COG1792 MreC Cell shape-determ 32.1 78 0.0017 35.1 5.5 36 100-135 70-108 (284)
160 PRK10820 DNA-binding transcrip 32.0 2E+02 0.0043 34.4 9.3 99 722-832 84-184 (520)
161 PRK11006 phoR phosphate regulo 31.3 91 0.002 35.5 6.1 50 719-770 98-148 (430)
162 cd07821 PYR_PYL_RCAR_like Pyra 31.3 2.8E+02 0.0061 25.4 8.4 35 216-250 6-40 (140)
163 PHA03155 hypothetical protein; 31.2 51 0.0011 31.9 3.3 24 112-135 10-33 (115)
164 PF05812 Herpes_BLRF2: Herpesv 31.2 53 0.0011 32.0 3.5 25 112-136 5-29 (118)
165 PHA03162 hypothetical protein; 30.4 53 0.0011 32.6 3.3 24 112-135 15-38 (135)
166 PF12808 Mto2_bdg: Micro-tubul 30.0 74 0.0016 26.8 3.6 23 114-136 26-48 (52)
167 PRK10724 hypothetical protein; 29.4 1.1E+02 0.0023 30.9 5.6 107 214-343 18-124 (158)
168 PF04977 DivIC: Septum formati 29.4 91 0.002 26.9 4.4 28 108-135 22-49 (80)
169 TIGR02894 DNA_bind_RsfA transc 29.1 1.3E+02 0.0029 30.8 6.0 30 103-132 104-133 (161)
170 PRK00888 ftsB cell division pr 28.0 84 0.0018 29.8 4.2 30 106-135 30-59 (105)
171 KOG1962 B-cell receptor-associ 27.7 1.4E+02 0.0031 32.0 6.3 22 114-135 190-211 (216)
172 KOG4571 Activating transcripti 27.0 1.6E+02 0.0034 32.9 6.6 37 96-132 248-284 (294)
173 PRK13729 conjugal transfer pil 26.3 1.7E+02 0.0036 34.9 7.0 45 91-135 78-122 (475)
174 cd08861 OtcD1_ARO-CYC_like N-t 25.9 2.1E+02 0.0046 26.9 6.6 32 216-247 4-37 (142)
175 PF15058 Speriolin_N: Sperioli 25.8 1.1E+02 0.0023 32.4 4.8 38 99-137 8-45 (200)
176 PRK13560 hypothetical protein; 25.1 4E+02 0.0087 32.4 10.4 102 726-832 340-461 (807)
177 PF12711 Kinesin-relat_1: Kine 25.0 1.3E+02 0.0028 27.9 4.7 33 104-136 25-63 (86)
178 PF14197 Cep57_CLD_2: Centroso 25.0 2.6E+02 0.0057 24.7 6.4 38 98-135 21-58 (69)
179 cd07813 COQ10p_like Coenzyme Q 23.9 1.9E+02 0.0041 27.3 5.9 106 215-343 3-108 (138)
180 KOG1146 Homeobox protein [Gene 23.6 22 0.00047 46.4 -0.8 54 30-87 448-501 (1406)
181 PF08172 CASP_C: CASP C termin 23.6 2E+02 0.0044 31.4 6.6 37 98-134 95-131 (248)
182 PRK10884 SH3 domain-containing 23.3 2E+02 0.0044 30.5 6.4 30 106-135 135-164 (206)
183 TIGR02449 conserved hypothetic 23.2 2.7E+02 0.0059 24.5 6.0 32 101-132 12-43 (65)
184 PF07407 Seadorna_VP6: Seadorn 23.2 96 0.0021 35.1 4.1 23 92-114 35-57 (420)
185 TIGR02209 ftsL_broad cell divi 23.1 1.6E+02 0.0034 26.1 4.9 30 107-136 28-57 (85)
186 PF07558 Shugoshin_N: Shugoshi 22.9 69 0.0015 26.1 2.2 37 97-133 8-44 (46)
187 COG4467 Regulator of replicati 22.5 2.3E+02 0.005 27.4 5.9 37 99-135 18-54 (114)
188 PF10226 DUF2216: Uncharacteri 22.0 2.8E+02 0.0061 29.3 6.9 32 80-112 47-78 (195)
189 PF08410 DUF1737: Domain of un 21.7 1.6E+02 0.0035 25.0 4.3 39 775-814 15-53 (54)
190 KOG4797 Transcriptional regula 21.5 1.8E+02 0.0039 28.1 5.0 31 101-131 65-95 (123)
191 PF04880 NUDE_C: NUDE protein, 21.4 1.1E+02 0.0025 31.5 4.0 19 115-133 29-47 (166)
192 PF15035 Rootletin: Ciliary ro 21.2 2.5E+02 0.0053 29.3 6.4 44 91-134 76-119 (182)
193 PF06156 DUF972: Protein of un 21.0 1.9E+02 0.0042 27.6 5.2 36 101-136 13-48 (107)
194 KOG4403 Cell surface glycoprot 20.8 1.5E+02 0.0033 34.8 5.1 14 74-87 228-244 (575)
195 PF14662 CCDC155: Coiled-coil 20.6 2.3E+02 0.005 29.9 6.0 42 94-135 79-120 (193)
196 PF06210 DUF1003: Protein of u 20.3 3E+02 0.0064 26.5 6.3 46 79-125 57-102 (108)
197 KOG0288 WD40 repeat protein Ti 20.2 3E+02 0.0066 32.3 7.3 46 90-135 28-73 (459)
198 KOG3755 SATB1 matrix attachmen 20.1 26 0.00056 42.2 -1.0 64 24-89 689-758 (769)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=5.7e-72 Score=577.97 Aligned_cols=205 Identities=34% Similarity=0.596 Sum_probs=186.8
Q ss_pred hhchHHHHHHHHHHHHHHhcCCCcceEecCCCCC---CCCccceeec------cCCCcccccceeeEEEeChhHHHHHhc
Q 003250 161 PAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKP---GPDSVGIFAI------SQSCSGVAARACGLVSLEPTKIAEILK 231 (836)
Q Consensus 161 ~~~l~~lA~~am~Ell~~a~~~~plWi~~~~~~~---g~~~~~~~~~------~~~~~~eASR~~glV~m~~~~LVe~lm 231 (836)
++++++||++||+||++||++++|+|++++|+|+ ++|.++..+. ..||.+||||+||+|+||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 4679999999999999999999999999999876 7777754322 236999999999999999999999999
Q ss_pred CccchhhhCCCc----eEeeeecCCC----ccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCC
Q 003250 232 DRPSWFRDCRSL----EVFTMFPAGN----AGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAG 303 (836)
Q Consensus 232 D~~~W~~~f~~~----~~l~~~~~g~----~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~ 303 (836)
|+++|.++||++ +|+.++++|+ +|+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~- 159 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT- 159 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc-
Confidence 999999999876 8999999996 7899999999999999999999999999999999999999999998752
Q ss_pred CCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecccccccccccccccchHHHHHhhhhh
Q 003250 304 PNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQRMTIA 368 (836)
Q Consensus 304 ~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpL~~Sg~afA~R~~~~ 368 (836)
.++.++|+||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||++++|++
T Consensus 160 --~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a 222 (229)
T cd08875 160 --APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVA 222 (229)
T ss_pred --CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHH
Confidence 334457899999999999999999999999999999999999999999999999997666655
No 2
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=100.00 E-value=2e-59 Score=456.44 Aligned_cols=148 Identities=39% Similarity=0.581 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCccCCCCCCchhHHHHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccc
Q 003250 688 PEALTLAHWICQSYSYHLGAELLRSDSVGGDSVLKNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDK 767 (836)
Q Consensus 688 pe~~~l~~~l~~Sy~~~~G~~L~~~~~~~~~~~~~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~ 767 (836)
||++.|+++|++||+++||++|++....+.++.+++|||||||||||++|+||+|||||++||+||||+|+||++||||+
T Consensus 1 pe~~~~~~~l~~SY~~~~G~~L~~~~~~~~~~~~~~L~~ap~ailsh~~~~dP~f~yaN~aaL~l~e~~w~el~~lPsr~ 80 (148)
T PF08670_consen 1 PEALALAQLLLQSYRRWTGRDLLPSDDSSAEELAKALWHAPFAILSHGTKADPIFIYANQAALDLFETTWDELVGLPSRL 80 (148)
T ss_pred ChHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHcCCCEEEEcCCCCCCEEEehhHHHHHHhcCCHHHHhcCcHhh
Confidence 79999999999999999999999987777779999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecCceeC
Q 003250 768 IFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFINWSFV 836 (836)
Q Consensus 768 tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~W~~l 836 (836)
|||+++|+||+++|++|++|||+++|+||||||+||||+||+|+||||+| ++|++|||||||+||+||
T Consensus 81 sae~~~r~er~~lL~~v~~qG~~~~y~GiRiss~Grrf~ie~a~vW~l~D-~~g~~~GqAa~F~~W~~l 148 (148)
T PF08670_consen 81 SAEEPERKERQSLLAQVMQQGYIDNYSGIRISSTGRRFRIERATVWNLID-EDGNYCGQAAMFSNWSFL 148 (148)
T ss_pred ccChhhHHHHHHHHHHHHHhCCccCCCeEEEcCCCCeEEEeceEEEEEEc-CCCCEEEEEEEEeeeEeC
Confidence 99999999999999999999999999999999999999999999999999 999999999999999997
No 3
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.68 E-value=7e-17 Score=163.66 Aligned_cols=189 Identities=26% Similarity=0.368 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeeccCCCcccccceeeEEEeChhHHHHHhcCcc-chhhhCCCce
Q 003250 166 SIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRP-SWFRDCRSLE 244 (836)
Q Consensus 166 ~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lmD~~-~W~~~f~~~~ 244 (836)
++|++++.+++++++.++..|....+.+.+...+.....+.++....-|..++|...+.++++.|+|.. +|-.++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~Wd~~~~~~~ 80 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDREQWDKMCVEAE 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGGHHSTTEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHhhcccchhhhe
Confidence 589999999999999999999997532333332333322223467889999999999999999999988 9999999999
Q ss_pred EeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCC-cccccceeecCccee
Q 003250 245 VFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPAS-AAQFVRAEMLPSGCL 323 (836)
Q Consensus 245 ~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~-~~~~~r~~rlPSGcl 323 (836)
+|+.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+..|++... .++ ...++|+..++||++
T Consensus 81 ~le~~~~~--~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~----~~~~~~~~VR~~~~~s~~~ 153 (206)
T PF01852_consen 81 VLEQIDED--TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQ----YPPNSKGYVRAEILISGWV 153 (206)
T ss_dssp EEEEEETT--EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTT----SSTT-TTSEEEEEESEEEE
T ss_pred eeeecCCC--CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeecccc----ccccccCcceeeeeeEeEE
Confidence 99999865 455556677788889999 9999999999999999999999998643 223 457899999999999
Q ss_pred EeecCCCccEEEEEEeeecccccccccccccccchHHH
Q 003250 324 IRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVV 361 (836)
Q Consensus 324 Iq~~~nG~skVtwVeH~e~d~~~vh~lyrpL~~Sg~af 361 (836)
|++.++|.|+||+|-|+|..-+...-+++.++.+...-
T Consensus 154 i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~ 191 (206)
T PF01852_consen 154 IRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPN 191 (206)
T ss_dssp EEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred EEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHH
Confidence 99999999999999999999988888888888777654
No 4
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.65 E-value=2e-16 Score=161.71 Aligned_cols=113 Identities=34% Similarity=0.515 Sum_probs=98.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHHHHHHhhHHHHHh
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAM 104 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~~l~~~n~~l~~~ 104 (836)
...+++.|+|.+|+..||..|+...+..+.+|.+||++| ||.+|||+|||||||+|||.++.+. +.+.|+.+
T Consensus 49 ~~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L----gL~pRQVavWFQNRRARwK~kqlE~----d~~~Lk~~ 120 (198)
T KOG0483|consen 49 KGKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL----GLQPRQVAVWFQNRRARWKTKQLEK----DYESLKRQ 120 (198)
T ss_pred ccccccccccHHHHHHhHHhhccccccChHHHHHHHHhh----CCChhHHHHHHhhccccccchhhhh----hHHHHHHH
Confidence 345677899999999999999999999999999999999 9999999999999999999988774 45568999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCC---CCCCCC
Q 003250 105 NKLLMEENDRLQKQVSQLVCENGYMKQQLRTAPAT---TDASCD 145 (836)
Q Consensus 105 n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~~~~---~~~s~~ 145 (836)
.+.++.++++++.+++.|+.+...++.+.++.... .+++|+
T Consensus 121 ~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T KOG0483|consen 121 LESLRSENDRLQSEVQELVAELSSLKREMQKSPENTLTMCPNSE 164 (198)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhhhccCcccccccCcccc
Confidence 99999999999999999999988888887774322 455554
No 5
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.62 E-value=5.4e-15 Score=150.27 Aligned_cols=189 Identities=28% Similarity=0.445 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeeccCCCcccccceeeEEEeChhH-HHHHhcCc---cchhhhCCC
Q 003250 167 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTK-IAEILKDR---PSWFRDCRS 242 (836)
Q Consensus 167 lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~-LVe~lmD~---~~W~~~f~~ 242 (836)
.|++++.|+++++...+..|....+.+.|..++.... ..+..+.+-|..++|...+.+ +.++|+|. .+|-..|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~ 80 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENGDEVRSILS-PGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK 80 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCcceEEEEcc-CCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc
Confidence 4788999999999999999999765445555443321 112456899999999999987 66788787 789999999
Q ss_pred ceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccceeecCcce
Q 003250 243 LEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGC 322 (836)
Q Consensus 243 ~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 322 (836)
.++|+.++.+. .++|.-+..+-++++.|||.++|++++.++|.|+|+..|++.. ..|+...++|+..++||+
T Consensus 81 ~~~ie~~~~~~----~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~----~~p~~~~~VR~~~~~~~~ 152 (206)
T smart00234 81 AETLEVIDNGT----VIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHP----TSPPTSGYVRAENLPSGL 152 (206)
T ss_pred EEEEEEECCCC----eEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCC----CCCCCCCceEEEEeceEE
Confidence 99999887542 2333222233213566999999999999999999999999853 334456889999999999
Q ss_pred eEeecCCCccEEEEEEeeecccccccccccccccchHHHHHh
Q 003250 323 LIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQR 364 (836)
Q Consensus 323 lIq~~~nG~skVtwVeH~e~d~~~vh~lyrpL~~Sg~afA~R 364 (836)
+|+++++|.|+|||+.|+|..-+..+-+.+.++.++.....+
T Consensus 153 ~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~ 194 (206)
T smart00234 153 LIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAK 194 (206)
T ss_pred EEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHH
Confidence 999999999999999999999987777888888777665333
No 6
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.50 E-value=5.8e-15 Score=157.67 Aligned_cols=64 Identities=28% Similarity=0.425 Sum_probs=59.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
+..||.|+.||..|+.+||+.|+.++|.+..+|.|||..| +|+++||||||||||+||||.++.
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L----~LtErQIKIWFQNRRMK~Kk~~k~ 220 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHAL----NLTERQIKIWFQNRRMKWKKENKA 220 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHhhcc
Confidence 4568899999999999999999999999999999999999 999999999999999999985543
No 7
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.49 E-value=1.3e-14 Score=156.28 Aligned_cols=67 Identities=33% Similarity=0.480 Sum_probs=60.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ 95 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~~l~ 95 (836)
..||||..||+.|+.+||+.|.-|.|.+...|.||++.| +|++|||||||||||+|+||..++.+++
T Consensus 234 ~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~l----NLTeRQVKIWFQNRRMK~KK~~re~r~~ 300 (308)
T KOG0487|consen 234 RGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTL----NLTERQVKIWFQNRRMKEKKVNRENRLK 300 (308)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhc----ccchhheeeeehhhhhHHhhhhhhhhcc
Confidence 457889999999999999999999999999999999999 9999999999999999999966544433
No 8
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.48 E-value=2.1e-14 Score=142.60 Aligned_cols=64 Identities=28% Similarity=0.445 Sum_probs=59.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 92 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~ 92 (836)
+.||.||.||.+|+..||..|+.|+|....+|++||+.| +|++.||||||||||+|.||.+.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L----~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSL----SLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHc----CCChhHhhhhhhhhhHHHHHHHHHh
Confidence 457889999999999999999999999999999999999 9999999999999999999866553
No 9
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.46 E-value=2.6e-14 Score=155.71 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=59.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
++.|+.|+.||..|+.+||+.|++.+|.+..+|.+||+.| ||+..|||+||||||+|||+..+.
T Consensus 170 kK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~L----gLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 170 KKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASL----GLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred cccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHc----CCchhhHHHHHhhhhHHHHHHHHh
Confidence 4567779999999999999999999999999999999999 999999999999999999996655
No 10
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.44 E-value=7.3e-14 Score=150.61 Aligned_cols=68 Identities=29% Similarity=0.519 Sum_probs=60.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQT 96 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~~l~~ 96 (836)
++||+|.-||..|+.+||+.|+.++|.+..+|++||..| +|++.||||||||||-|.||++....+..
T Consensus 152 ~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~L----rLT~TQVKIWFQNrRYK~KR~~~dk~~~~ 219 (307)
T KOG0842|consen 152 KKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSL----RLTPTQVKIWFQNRRYKTKRQQKDKALEA 219 (307)
T ss_pred cccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhc----CCCchheeeeeecchhhhhhhhhhhhhhc
Confidence 446667779999999999999999999999999999999 99999999999999999999776654443
No 11
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.40 E-value=7.9e-14 Score=127.31 Aligned_cols=62 Identities=26% Similarity=0.552 Sum_probs=58.5
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
.++||-|+.||..|+.+||+.|.+.+||+.-.|++||.++ .|++..|+|||||||+|.|++.
T Consensus 15 rKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~ki----dLTEARVQVWFQNRRAKfRKQE 76 (125)
T KOG0484|consen 15 RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKI----DLTEARVQVWFQNRRAKFRKQE 76 (125)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhh----hhhHHHHHHHHHhhHHHHHHHH
Confidence 4678899999999999999999999999999999999999 9999999999999999988733
No 12
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.39 E-value=2.1e-13 Score=140.13 Aligned_cols=64 Identities=27% Similarity=0.406 Sum_probs=59.3
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
+++-|+.||.|+.-||+.|.+.|++++|.--.+|.+||..| ||+..||||||||||.|.||.++
T Consensus 119 ~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsL----GLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 119 GKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASL----GLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred cccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHh----CCchhHhhhhhhhhHHHHHHHHh
Confidence 34557889999999999999999999999999999999999 99999999999999999998555
No 13
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.36 E-value=5.6e-13 Score=134.85 Aligned_cols=66 Identities=33% Similarity=0.517 Sum_probs=60.4
Q ss_pred ccCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 22 KHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 22 ~~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
|++-.|+.|+.||.+|+..||+-|++.+|.+..+|.+++..| .|++.||||||||||+|.||-|+.
T Consensus 140 Khk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL----~LTeTqVKIWFQNRRAKaKRlQea 205 (246)
T KOG0492|consen 140 KHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSL----ELTETQVKIWFQNRRAKAKRLQEA 205 (246)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhh----hhhhhheehhhhhhhHHHHHHHHH
Confidence 455567889999999999999999999999999999999999 999999999999999999985543
No 14
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.35 E-value=3.2e-13 Score=111.30 Aligned_cols=57 Identities=42% Similarity=0.723 Sum_probs=54.9
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
|++|+.||.+|+..||..|..++||+..++.+||.++ ||++.||+.||||||.++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l----~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKEL----GLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHH----TSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccc----cccccccccCHHHhHHHhCc
Confidence 5788999999999999999999999999999999999 99999999999999999885
No 15
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.34 E-value=4.1e-13 Score=136.52 Aligned_cols=61 Identities=28% Similarity=0.359 Sum_probs=57.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
.+||.|+.|+..|+-.||..|+..+|.+..+|.-||++| .|++.|||+||||||.|||++-
T Consensus 103 RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sL----qLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 103 RKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASL----QLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhh----hhhhhhhhhhhhhhhHHHHHHH
Confidence 556778889999999999999999999999999999999 9999999999999999999844
No 16
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.34 E-value=3.3e-13 Score=140.83 Aligned_cols=57 Identities=30% Similarity=0.532 Sum_probs=53.7
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 30 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 30 R~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
|..||..|..+||+.|..++|.+..++.|||.-| ||++|||||||||||+|+||.++
T Consensus 203 RvVYTDhQRLELEKEfh~SryITirRKSELA~~L----gLsERQVKIWFQNRRAKERK~nK 259 (317)
T KOG0848|consen 203 RVVYTDHQRLELEKEFHTSRYITIRRKSELAATL----GLSERQVKIWFQNRRAKERKDNK 259 (317)
T ss_pred eEEecchhhhhhhhhhccccceeeehhHHHHHhh----CccHhhhhHhhhhhhHHHHHHHH
Confidence 5679999999999999999999999999999999 99999999999999999988444
No 17
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.32 E-value=1e-12 Score=136.54 Aligned_cols=58 Identities=29% Similarity=0.560 Sum_probs=55.1
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 30 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 30 R~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
|+.||..|+++||+.|++.+|||...|+-||-++ .|.+..|+|||||||+||||+.+.
T Consensus 145 RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~kt----elpEDRIqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEAHYPDVYAREMLADKT----ELPEDRIQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred cchhhHHHHHHHHHHHhhccCccHHHHHHHhhhc----cCchhhhhHHhhhhhHHhhhhhhh
Confidence 7789999999999999999999999999999999 999999999999999999986554
No 18
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.31 E-value=1.2e-12 Score=134.10 Aligned_cols=65 Identities=23% Similarity=0.533 Sum_probs=60.8
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
.+++||.||+||..|+++||.+|.++.|||...|++||.+| +|.+.+|||||+|||+|+|+++..
T Consensus 34 pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlkl----nLpeSrVqVWFKNRRAK~r~qq~q 98 (228)
T KOG2251|consen 34 PRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKL----NLPESRVQVWFKNRRAKCRRQQQQ 98 (228)
T ss_pred chhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHh----CCchhhhhhhhccccchhhHhhhh
Confidence 34778999999999999999999999999999999999999 999999999999999999986554
No 19
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.27 E-value=1.8e-12 Score=134.76 Aligned_cols=60 Identities=33% Similarity=0.554 Sum_probs=57.3
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
+.+||.|+.||.+|++.|+..|+++.|.++..|++||.+| +|.+.||||||||+|+|.||
T Consensus 244 ~eeKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~EL----gLNEsQIKIWFQNKRAKiKK 303 (342)
T KOG0493|consen 244 KEEKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQEL----GLNESQIKIWFQNKRAKIKK 303 (342)
T ss_pred chhcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----CcCHHHhhHHhhhhhhhhhh
Confidence 3567889999999999999999999999999999999999 99999999999999999987
No 20
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.18 E-value=1.1e-10 Score=115.62 Aligned_cols=165 Identities=23% Similarity=0.372 Sum_probs=129.1
Q ss_pred HHHHHHHHHhcCCCcceEecCCCCCCCCccceeeccCCCcccccceeeEEEeChhHHHHHhcC---ccchhhhCCCceEe
Q 003250 170 ETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKD---RPSWFRDCRSLEVF 246 (836)
Q Consensus 170 ~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lmD---~~~W~~~f~~~~~l 246 (836)
++..+++.+.+.+ ..|-..... .|-..+... ..+.....-|..+.|..++.++.++|+| +.+|-..|...+++
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~-~~v~vy~~~--~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl 77 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEK-DGVKIYTKP--YEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVI 77 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEEC-CcEEEEEec--CCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEE
Confidence 4667788887766 679876321 122212110 1122346789999999999999999999 77788888888888
Q ss_pred eeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccceeecCcceeEee
Q 003250 247 TMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRP 326 (836)
Q Consensus 247 ~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~ 326 (836)
..+..+ ..++|..+..|.| ++.|||.++|++.+.++|.++|+..|+|.. ..|....++|++.+++|++|++
T Consensus 78 ~~~~~~----~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~----~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 78 EEIDEH----TDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHD----SHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred EEeCCC----eEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCC----CCCCCCCcEEEEEEccEEEEEE
Confidence 887643 5678888899999 999999999999999999999999999863 2233347899999999999999
Q ss_pred cCCCccEEEEEEeeecccccc
Q 003250 327 CDGGGSIIHIVDHLNLEAWSV 347 (836)
Q Consensus 327 ~~nG~skVtwVeH~e~d~~~v 347 (836)
+++|.|+||++-|+|..-+..
T Consensus 149 ~~~~~~~vt~~~~~D~~g~iP 169 (193)
T cd00177 149 LDPGKTKVTYVLQVDPKGSIP 169 (193)
T ss_pred CCCCCEEEEEEEeeCCCCCcc
Confidence 999999999999999886543
No 21
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.16 E-value=2.9e-11 Score=120.12 Aligned_cols=65 Identities=37% Similarity=0.602 Sum_probs=59.9
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
...++++|+|.|.+|+..|++.|+.||||+...|.+|+..| ||+++-|++||||||++.|+....
T Consensus 48 s~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~l----nm~~ksVqIWFQNkR~~~k~~~~~ 112 (156)
T COG5576 48 SSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLL----NMPPKSVQIWFQNKRAKEKKKRSG 112 (156)
T ss_pred CCcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhc----CCChhhhhhhhchHHHHHHHhccc
Confidence 44678899999999999999999999999999999999999 999999999999999999885543
No 22
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.15 E-value=1.5e-11 Score=100.54 Aligned_cols=55 Identities=40% Similarity=0.686 Sum_probs=51.6
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHH
Q 003250 28 GKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 86 (836)
Q Consensus 28 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~K 86 (836)
+.|++++.+|+..||..|..++||+..++.+||.++ ||+.+||+.||+|||.+.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKL----GLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHhHHHHhhccC
Confidence 556789999999999999999999999999999999 9999999999999998753
No 23
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.14 E-value=2.4e-11 Score=99.95 Aligned_cols=56 Identities=41% Similarity=0.751 Sum_probs=53.3
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 28 GKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 28 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
+++..++.+|+..||..|..++||+..++.+||.++ ||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKEL----GLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHhc
Confidence 567799999999999999999999999999999999 99999999999999999775
No 24
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.13 E-value=5.9e-11 Score=99.45 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=50.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCC----CCHHHHHHHHHhCCcccCCCccceeeccccch
Q 003250 27 NGKYVRYTAEQVEALERVYSECPK----PSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 82 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~~~~----Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRR 82 (836)
+|.|+.||++|++.||..|..++| |+...|.+||.++ ||++++|||||||-+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~l----gl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEI----GVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHh----CCCHHHeeeecccCC
Confidence 688999999999999999999999 9999999999999 999999999999964
No 25
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.12 E-value=2e-11 Score=124.39 Aligned_cols=65 Identities=31% Similarity=0.488 Sum_probs=59.3
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
.+.++..|.+|+..||..||..|+..+|+-...|.+||..+ |+.+.||||||||||+|||||...
T Consensus 164 dG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~l----gmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 164 NGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQEL----NMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred CccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccc----cccHHHHHHHHhcchhhhhhhhcc
Confidence 44556667889999999999999999999999999999999 999999999999999999997753
No 26
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.08 E-value=1e-11 Score=121.85 Aligned_cols=64 Identities=25% Similarity=0.454 Sum_probs=59.2
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASR 93 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~~ 93 (836)
.++.|+.|+..|+..||+.|+..+|.+..+|.+||..| +|+++|||.||||||+|.||.+++..
T Consensus 100 r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L----~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 100 RRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANAL----SLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred hhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 45668999999999999999999999999999999999 99999999999999999998776543
No 27
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.07 E-value=4.3e-11 Score=126.80 Aligned_cols=63 Identities=33% Similarity=0.470 Sum_probs=57.7
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASR 93 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~~ 93 (836)
||=|+.||.+||..||+.|.+..|-+...|.|||..| ||.+..|||||||||+|.||++-...
T Consensus 182 RRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaL----NLPEtTIKVWFQNRRMKDKRQRlama 244 (408)
T KOG0844|consen 182 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAAL----NLPETTIKVWFQNRRMKDKRQRLAMA 244 (408)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhh----CCCcceeehhhhhchhhhhhhhhhcc
Confidence 5668889999999999999999999999999999999 99999999999999999998654433
No 28
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.03 E-value=1.8e-10 Score=121.47 Aligned_cols=64 Identities=36% Similarity=0.626 Sum_probs=59.4
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
.+-.||.|+++|..|++.|+..|+..|+|-..-|++|+.+. ||..|.|+|||||||+|+|+-++
T Consensus 164 d~~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseT----GLDMRVVQVWFQNRRAKEKRLKK 227 (383)
T KOG4577|consen 164 DASNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSET----GLDMRVVQVWFQNRRAKEKRLKK 227 (383)
T ss_pred ccccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhcc----CcceeehhhhhhhhhHHHHhhhh
Confidence 33457899999999999999999999999999999999999 99999999999999999998554
No 29
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.01 E-value=2.2e-10 Score=126.41 Aligned_cols=62 Identities=27% Similarity=0.440 Sum_probs=58.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
++||||+.++...+..||++|.+|++|+..++.+||.+| +|+...|+|||+|||.|+||-..
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L----~leKEVVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESL----QLEKEVVRVWFCNRRQKEKRITP 354 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----ccccceEEEEeeccccccccCCC
Confidence 568889999999999999999999999999999999999 99999999999999999988433
No 30
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=98.99 E-value=2.5e-10 Score=122.00 Aligned_cols=64 Identities=22% Similarity=0.481 Sum_probs=59.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 92 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~ 92 (836)
++||.|+.||.+|+++||..|+++.||+-..|++||-.. +|++..|+|||.|||+||||+..+.
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwt----NlTE~rvrvwfknrrakwrkrErN~ 174 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKRERNQ 174 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhc----cccchhhhhhcccchhhhhhhhhhH
Confidence 567778889999999999999999999999999999999 9999999999999999999976654
No 31
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.94 E-value=8.1e-09 Score=107.04 Aligned_cols=170 Identities=17% Similarity=0.236 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeec-cCCCcccccceeeEEEeChhHHHHHhcCcc---chhhhC
Q 003250 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVSLEPTKIAEILKDRP---SWFRDC 240 (836)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD~~---~W~~~f 240 (836)
..++++|++|+++.-. ..-.|-.. |.+.+ +.+... .+.+.+---|..|+|..++.+|+|.+-|.+ +|-..|
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~---k~~~~-~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVV---KTSKK-ITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEE---ecCCc-eEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccc
Confidence 5789999999999987 45788774 22322 222221 234455677999999999999999998866 455555
Q ss_pred CCceEeeeecCCCccHHHHHHHhhh-ccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccceeecC
Q 003250 241 RSLEVFTMFPAGNAGTIELLYTQAY-APTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLP 319 (836)
Q Consensus 241 ~~~~~l~~~~~g~~GalqLm~aE~~-v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlP 319 (836)
-..++|+.+.... .+.|.-++ .+-++|-+|||..+||.++.++|.++|+..|++ .+..|+...++|++..|
T Consensus 79 ~~~~iie~Id~~T----~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~----Hp~~Pp~~g~VRa~n~~ 150 (204)
T cd08904 79 QVYKMLQRIDSDT----FICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVE----YPQCPPSSNYIRGYNHP 150 (204)
T ss_pred cceeeEEEeCCCc----EEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecc----cCCCCCCCCcEEEeeec
Confidence 5556776655322 23332222 345789999999999999999999999999986 34566777999999999
Q ss_pred cceeEeecCCC--ccEEEEEEeeeccccccc
Q 003250 320 SGCLIRPCDGG--GSIIHIVDHLNLEAWSVP 348 (836)
Q Consensus 320 SGclIq~~~nG--~skVtwVeH~e~d~~~vh 348 (836)
+||+|++.+++ +|+++|+-++|+.-+ +|
T Consensus 151 ~G~~i~pl~~~p~~t~l~~~~~~DlkG~-lP 180 (204)
T cd08904 151 CGYVCSPLPENPAYSKLVMFVQPELRGN-LS 180 (204)
T ss_pred cEEEEEECCCCCCceEEEEEEEeCCCCC-CC
Confidence 99999999874 899999999877633 44
No 32
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.89 E-value=1.5e-08 Score=104.39 Aligned_cols=169 Identities=22% Similarity=0.320 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeec-cCCCcccccceeeEEEeChhHHHHHhcC-----ccchh
Q 003250 164 LLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVSLEPTKIAEILKD-----RPSWF 237 (836)
Q Consensus 164 l~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD-----~~~W~ 237 (836)
+-.++++|.+|++.... .+.-|..... +.| +.++.. ..++.+-.-|..|.+..++.++++.|+| +.+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~-~~~---i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd 77 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKT-VKN---ITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWD 77 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEc-CCC---cEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCcccccccc
Confidence 34689999999999987 4477987532 122 212211 1122223368999999999999999998 57899
Q ss_pred hhCCCceEeeeecCCCccHHHHHHHhhhcc---ccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccc
Q 003250 238 RDCRSLEVFTMFPAGNAGTIELLYTQAYAP---TTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVR 314 (836)
Q Consensus 238 ~~f~~~~~l~~~~~g~~GalqLm~aE~~v~---SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r 314 (836)
..|-..++|+.+..+. .++|. ..+ .++|..|||..+||.++.++|.++|+-.|++. |..|+.+.++|
T Consensus 78 ~~~~~~~~le~id~~~----~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h----p~~p~~~~~VR 147 (206)
T cd08867 78 KSLKHYEVLEKISEDL----CVGRT--ITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI----PERPPTPGFVR 147 (206)
T ss_pred ccccceEEEEEeCCCe----EEEEE--EccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC----CCCCCCCCcEE
Confidence 9998888888875321 22332 233 34799999999999999999999999999874 33456668999
Q ss_pred eeecCcceeEeecC--CCccEEEEEEeeeccccccc
Q 003250 315 AEMLPSGCLIRPCD--GGGSIIHIVDHLNLEAWSVP 348 (836)
Q Consensus 315 ~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh 348 (836)
+...++|++|++.+ ++.|+|||+-|+|..- .+|
T Consensus 148 ~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP 182 (206)
T cd08867 148 GYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIP 182 (206)
T ss_pred EEeecCEEEEEECCCCCCceEEEEEEEeccCC-CCc
Confidence 99999999999886 5789999999999763 344
No 33
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.82 E-value=2.8e-08 Score=103.54 Aligned_cols=166 Identities=20% Similarity=0.323 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeec-cCCCcccccceeeEE-EeChhHHHHHhcC---ccchhhhCCC
Q 003250 168 AEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLV-SLEPTKIAEILKD---RPSWFRDCRS 242 (836)
Q Consensus 168 A~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~-~~~~~~eASR~~glV-~m~~~~LVe~lmD---~~~W~~~f~~ 242 (836)
-++.+++|+.++..++ -|-.... +.| +.++-. ..+...-.-|..+.+ ...+..+.+.|+| +.+|-..|..
T Consensus 8 ~~~~~~~~~~~~~~~~-~W~~~~~-~~g---i~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e 82 (222)
T cd08871 8 TDADFEEFKKLCDSTD-GWKLKYN-KNN---VKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE 82 (222)
T ss_pred CHHHHHHHHHHhcCCC-CcEEEEc-CCC---eEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce
Confidence 3688999999997544 7987532 122 222211 122333456777765 5788899999999 5889888888
Q ss_pred ceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccceeecCcce
Q 003250 243 LEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGC 322 (836)
Q Consensus 243 ~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 322 (836)
.++|..+..+ ..++|..+..|-| |..|||.++|..+..+ |..+|+..|++. +..|....++|.....+|+
T Consensus 83 ~~~ie~~d~~----~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~----~~~P~~~g~VR~~~~~~g~ 152 (222)
T cd08871 83 SFDICQLNPN----NDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKH----KKYPPRKGFVRAISLLTGY 152 (222)
T ss_pred eEEEEEcCCC----CEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccC----CCCCCCCCeEEeEEEccEE
Confidence 8888877533 3567777888888 8999999999998776 888999999874 2345556899999999999
Q ss_pred eEeecCCCccEEEEEEeeecccccccc
Q 003250 323 LIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 323 lIq~~~nG~skVtwVeH~e~d~~~vh~ 349 (836)
+|++.+++.|+|||+-|++..-+ +|.
T Consensus 153 ~i~p~~~~~t~vt~~~~~Dp~G~-IP~ 178 (222)
T cd08871 153 LIRPTGPKGCTLTYVTQNDPKGS-LPK 178 (222)
T ss_pred EEEECCCCCEEEEEEEecCCCCC-cCH
Confidence 99999999999999999997755 554
No 34
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.77 E-value=4.9e-08 Score=100.70 Aligned_cols=170 Identities=20% Similarity=0.279 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeeccCCCcccccceeeEEEeChhHHHHHh-cC---ccchhhhC
Q 003250 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEIL-KD---RPSWFRDC 240 (836)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~l-mD---~~~W~~~f 240 (836)
..++++|+++++.+.. ++-|-.....+.|--++.. . ..+ .+-.-|..++|...+.++.+.| .| +.+|-..|
T Consensus 7 ~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~i~i~~r-~-~~~-~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~ 81 (208)
T cd08868 7 LKQGAEALARAWSILT--DPGWKLEKNTTWGDVVYSR-N-VPG-VGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTV 81 (208)
T ss_pred HHHHHHHHHHHHHHhc--CCCceEEEecCCCCEEEEE-E-cCC-CceEEEEEEEEcCCHHHHHHHHHcCccccceecCcc
Confidence 5789999999999964 5589875321112111111 1 112 2356899999999999987654 44 57899999
Q ss_pred CCceEeeeecCCCccHHHHHHHhhhcc-ccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccceeecC
Q 003250 241 RSLEVFTMFPAGNAGTIELLYTQAYAP-TTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLP 319 (836)
Q Consensus 241 ~~~~~l~~~~~g~~GalqLm~aE~~v~-SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlP 319 (836)
-..++|+.+... ..++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++. +..|+...++|+..++
T Consensus 82 ~~~~~i~~~d~~----~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h----~~~P~~~g~VR~~~~~ 152 (208)
T cd08868 82 LECKIIQVIDDN----TDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEH----PAMPPTKNYVRGENGP 152 (208)
T ss_pred cceEEEEEecCC----cEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccC----CCCCCCCCeEEEeccc
Confidence 988898887632 22334222222 2589999999999999866 779999999863 2345566899999999
Q ss_pred cceeEeecCC--CccEEEEEEeeecccccccc
Q 003250 320 SGCLIRPCDG--GGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 320 SGclIq~~~n--G~skVtwVeH~e~d~~~vh~ 349 (836)
+|++|+++++ +.|+|||+-|+|..-+ +|.
T Consensus 153 ~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~ 183 (208)
T cd08868 153 GCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ 183 (208)
T ss_pred cEEEEEECCCCCCceEEEEEEEECCCCC-Ccc
Confidence 9999999987 6899999999997744 554
No 35
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.72 E-value=7.4e-09 Score=107.24 Aligned_cols=61 Identities=25% Similarity=0.452 Sum_probs=57.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
.+++.|+.|+..|+++||+.|++.+||+...|+.||..+ ++++..|++||||||+||++..
T Consensus 59 ~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~----~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 59 SKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLL----TGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred cccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcC----CCCeeeeehhhhhhcHhhhhhh
Confidence 557889999999999999999999999999999999999 9999999999999999999754
No 36
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.70 E-value=1.1e-07 Score=98.70 Aligned_cols=169 Identities=19% Similarity=0.299 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeec-cCCCcccccceeeEEEeChhHHHHHhcCc-----cchhh
Q 003250 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVSLEPTKIAEILKDR-----PSWFR 238 (836)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD~-----~~W~~ 238 (836)
.+++++|+++++.+-+ .+..|-..... .| +.++.. .+...+-.-|.-|+|..++.+|++.|+|. .+|-.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~-~~---i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~ 78 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRT-NE---VAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ 78 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcC-CC---EEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhh
Confidence 5789999999999875 66789875321 12 222211 11222223689999999999999999965 69999
Q ss_pred hCCCceEeeeecCCCccHHHHHHHhhhcccc---ccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccce
Q 003250 239 DCRSLEVFTMFPAGNAGTIELLYTQAYAPTT---LAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRA 315 (836)
Q Consensus 239 ~f~~~~~l~~~~~g~~GalqLm~aE~~v~SP---LVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~ 315 (836)
.|-..++|+.+.... . +.|. ..|.| +|.+|||..+|+.++.++|.++|.-.|.. .+..|+.+.++|+
T Consensus 79 ~~~~~~vle~id~~~-~---i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~----h~~~P~~~~~VR~ 148 (208)
T cd08903 79 NVKDFEVVEAISDDV-S---VCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVE----HPLCPPQAGFVRG 148 (208)
T ss_pred ccccEEEEEEecCCE-E---EEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEecc----CCCCCCCCCeEEE
Confidence 999999998887321 1 1221 34555 69999999999999999999887777765 3345666789999
Q ss_pred eecCcceeEeecCC--CccEEEEEEeeecccccccc
Q 003250 316 EMLPSGCLIRPCDG--GGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 316 ~rlPSGclIq~~~n--G~skVtwVeH~e~d~~~vh~ 349 (836)
+..|+|++|.+.++ +.|+|+|+-|+|.. ..+|.
T Consensus 149 ~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP~ 183 (208)
T cd08903 149 FNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLPQ 183 (208)
T ss_pred eeeccEEEEEECCCCCCceEEEEEEEeccC-CCcCH
Confidence 99999999999964 58999999888864 34663
No 37
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.57 E-value=3.1e-07 Score=95.43 Aligned_cols=128 Identities=25% Similarity=0.324 Sum_probs=97.1
Q ss_pred cccceeeEEEeChhHH-HHHhcCccchhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeee-ccCC
Q 003250 211 VAARACGLVSLEPTKI-AEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTT-LDNG 288 (836)
Q Consensus 211 eASR~~glV~m~~~~L-Ve~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq-~~~G 288 (836)
-+-|....|.-.+..+ -.++.++.+|-..|-..++|+.+... ..+.|--+.-|-|+ |.|||+.+|+-++ +++|
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~~~~ie~ld~~----tdi~~y~~~~~~P~-~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQWKVVETLDKQ----TEVYQYVLNCMAPH-PSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcceeEEEEEeCCC----cEEEEEEeecCCCC-CCCEEEEEEEEEEeCCCC
Confidence 4567666666666666 44677889999999888888877632 22233333345565 9999999999764 6799
Q ss_pred cEEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecccccccc
Q 003250 289 SLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 289 ~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 349 (836)
+.+|+..|++... .|+ ..++|+..+-+|++|+++++|.|+||++-|+|..-+ +|.
T Consensus 127 ~~vi~~~Sv~H~~----~p~-~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~-~P~ 181 (205)
T cd08909 127 ACSLVSVSVEHEE----APL-LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH-SPE 181 (205)
T ss_pred cEEEEEecCCCCc----CCC-CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC-ChH
Confidence 9999999998643 233 378999999999999999999999999999986533 554
No 38
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.56 E-value=2.5e-07 Score=96.10 Aligned_cols=170 Identities=18% Similarity=0.235 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeeccCCCcccccceeeEEEeChhHHHHHhc-C---ccchhhhC
Q 003250 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILK-D---RPSWFRDC 240 (836)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lm-D---~~~W~~~f 240 (836)
..++++|++|++++.+ .+..|-.....+.| +.++.......+-+-|.-++|..++.+|++.|. | ..+|...|
T Consensus 7 ~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g---i~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~ 82 (209)
T cd08905 7 IKQGEEALQKSLSILQ-DQEGWKTEIVAENG---DKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNV 82 (209)
T ss_pred HHHHHHHHHHHHHHhc-cccCCEEEEecCCC---CEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccc
Confidence 5789999999999986 55689874211222 222211111122677888999999999995555 4 37898888
Q ss_pred CCceEeeeecCCCccHHHHHHHhhhcccc--ccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccceeec
Q 003250 241 RSLEVFTMFPAGNAGTIELLYTQAYAPTT--LAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEML 318 (836)
Q Consensus 241 ~~~~~l~~~~~g~~GalqLm~aE~~v~SP--LVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rl 318 (836)
..+++|..+... .-++|. ..+|.| +|..|||-.+|+.++.+++. +++..|.+. +..|+...++|++..
T Consensus 83 ~~~~vl~~id~~----~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~~----~~~P~~~~~VR~~~~ 152 (209)
T cd08905 83 KEVKILQRIGKD----TLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATHF----GLMPEQKGFIRAENG 152 (209)
T ss_pred hHHHHHhhcCCC----ceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeecC----CCCCCCCCeEEEEee
Confidence 887777766532 123443 456655 79999999999999886554 566677653 335566689999999
Q ss_pred CcceeEeecCC--CccEEEEEEeeecccccccc
Q 003250 319 PSGCLIRPCDG--GGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 319 PSGclIq~~~n--G~skVtwVeH~e~d~~~vh~ 349 (836)
++|++|++.++ |.|+|+|+-|+|..-+ +|.
T Consensus 153 ~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~ 184 (209)
T cd08905 153 PTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK 184 (209)
T ss_pred ccEEEEEECCCCCCceEEEEEEeecCCCC-CCH
Confidence 99999999988 9999999999987655 554
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.55 E-value=4e-07 Score=93.71 Aligned_cols=166 Identities=24% Similarity=0.332 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhcCCCcceEecCCCCCCCCcccee--eccCCCcccccceeeEEEeChhHHHHHhcC-ccchhhhCCCceE
Q 003250 169 EETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIF--AISQSCSGVAARACGLVSLEPTKIAEILKD-RPSWFRDCRSLEV 245 (836)
Q Consensus 169 ~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~--~~~~~~~~eASR~~glV~m~~~~LVe~lmD-~~~W~~~f~~~~~ 245 (836)
+.+.++||+-+...+.-|...... .| +.+. +...++...+=|..++|.-.+.++++.++| +.+|-..|-..++
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~-~g---i~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~~~~~~~v 79 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSS-DH---VELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRERHLWDDDLLQWKV 79 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecC-Cc---EEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccchhhheEEE
Confidence 567889999999888999875331 22 2222 222333446778899999889999876655 5678888888889
Q ss_pred eeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeee-ccCCcEEEEEeecCCCCCCCCCCCcccccceeecCcceeE
Q 003250 246 FTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTT-LDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLI 324 (836)
Q Consensus 246 l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclI 324 (836)
|+.+... ..+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++... ..|+ .++|++.+++|++|
T Consensus 80 ie~id~~----~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~---~~p~--g~VR~~~~~~g~~i 149 (197)
T cd08869 80 VETLDED----TEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTE---PVPL--GGVRAVVLASRYLI 149 (197)
T ss_pred EEEecCC----cEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCC---CCCC--CCEEEEEEeeeEEE
Confidence 8888642 2355655666766 59999999999885 78899999999986321 1222 88999999999999
Q ss_pred eecCCCccEEEEEEeeecccccccc
Q 003250 325 RPCDGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 325 q~~~nG~skVtwVeH~e~d~~~vh~ 349 (836)
++.++|.|+||++-|+|.-- .+|.
T Consensus 150 ~p~~~~~t~vty~~~~Dp~G-~iP~ 173 (197)
T cd08869 150 EPCGSGKSRVTHICRVDLRG-RSPE 173 (197)
T ss_pred EECCCCCeEEEEEEEECCCC-CCCc
Confidence 99999999999999998642 4554
No 40
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.50 E-value=2.6e-07 Score=109.29 Aligned_cols=129 Identities=25% Similarity=0.330 Sum_probs=105.8
Q ss_pred cccceeeEEEeChhHHHHHhcCcc----chhhhCCCceEeeeecCCCccHHHHHHHhhh--ccccccCCceeeEEeeeee
Q 003250 211 VAARACGLVSLEPTKIAEILKDRP----SWFRDCRSLEVFTMFPAGNAGTIELLYTQAY--APTTLAPARDFWTLRYTTT 284 (836)
Q Consensus 211 eASR~~glV~m~~~~LVe~lmD~~----~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~--v~SPLVp~Re~~fLRyckq 284 (836)
-+=|+.|+|...+.+|.|.+|+.+ +|=..|-..++|+.+. |...++|.-++ .+...+-+|||+++||-+.
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID----~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr 302 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVD----GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRR 302 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEec----CCeEEEEEEeccccccCccCcceeEEEEEEEE
Confidence 567889999999999999999666 8888888888888875 23334443332 3446677799999999999
Q ss_pred ccCCcEEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecC--C--CccEEEEEEeeecccccc
Q 003250 285 LDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCD--G--GGSIIHIVDHLNLEAWSV 347 (836)
Q Consensus 285 ~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~--n--G~skVtwVeH~e~d~~~v 347 (836)
.+||+++|+=+|+.- +.-|+...|+|++..|+||+|.|++ + -.|.|+|+-|+++.-|..
T Consensus 303 ~eDGsYvil~~Sv~H----p~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 303 NDDGSYVVLFRSREH----ENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred cCCCcEEEeeeeeec----CCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 999999999999874 4456677999999999999999964 4 379999999999998875
No 41
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.48 E-value=1.1e-07 Score=100.70 Aligned_cols=68 Identities=21% Similarity=0.384 Sum_probs=62.2
Q ss_pred CCCCccCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 18 GSINKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 18 ~~~~~~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
++...++.+||||+.+.....+.||.+|...|.|+......+|.+| .|....|+|||+|.|.|.||.+
T Consensus 301 ~~l~~~~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekL----DLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 301 NELLPGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL----DLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred hhccCccccccccccccCcccccHHHHhccCCCCchhHHHHHHHhh----hhhhceEEEEeeccHHHHHHhh
Confidence 3455577889999999999999999999999999999999999999 9999999999999999988854
No 42
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.41 E-value=1.4e-07 Score=105.38 Aligned_cols=62 Identities=27% Similarity=0.579 Sum_probs=57.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
...+|+|+.|+..|++.||+.|+.++||+...|++||.++ ++.+..|++||+|||+|++|..
T Consensus 174 ~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i----~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 174 RGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKET----GLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred ccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhc----cCCchHHHHHHhhhhhhhhhcc
Confidence 3456778999999999999999999999999999999999 9999999999999999998844
No 43
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.26 E-value=6.2e-06 Score=85.88 Aligned_cols=170 Identities=14% Similarity=0.220 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeeccCCCcccccceeeEEEeChhHHH-HHhcCc---cchhhhC
Q 003250 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIA-EILKDR---PSWFRDC 240 (836)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LV-e~lmD~---~~W~~~f 240 (836)
...+++||+++.++... +..|.-....+.|-- ++-......+-+=|.-++|...+..|. +.|.|. .+|-.-+
T Consensus 7 ~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~gi~---V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~ 82 (209)
T cd08906 7 VRQGKEALAVVEQILAQ-EENWKFEKNNDNGDT---VYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTV 82 (209)
T ss_pred HHHHHHHHHHHHHHhhc-ccCCEEEEecCCCCE---EEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccc
Confidence 56789999999999764 447985311122322 221111111233377888888888885 677665 5677677
Q ss_pred CCceEeeeecCCCccHHHHHHHhhhcccc--ccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccceeec
Q 003250 241 RSLEVFTMFPAGNAGTIELLYTQAYAPTT--LAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEML 318 (836)
Q Consensus 241 ~~~~~l~~~~~g~~GalqLm~aE~~v~SP--LVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rl 318 (836)
...++|..+.... -+.| +.-.|.+ .|..|||-.+|+.++.++| ++++..|++. +..|+...++|.+..
T Consensus 83 ~~~~vi~~~~~~~----~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~----~~~P~~~~~VR~~~~ 152 (209)
T cd08906 83 SACQVLQRVDDNT----LVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH----SHKPPLSKYVRGENG 152 (209)
T ss_pred hhhhheeeccCCc----EEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec----CCCCCCCCeEEEeee
Confidence 7777777766321 2334 4444443 6899999999999998888 5778888874 235566789999999
Q ss_pred CcceeEeec--CCCccEEEEEEeeecccccccc
Q 003250 319 PSGCLIRPC--DGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 319 PSGclIq~~--~nG~skVtwVeH~e~d~~~vh~ 349 (836)
++|++|++. .+|.|+|||+-|+|..- .+|.
T Consensus 153 ~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP~ 184 (209)
T cd08906 153 PGGFVVLKSASNPSVCTFIWILNTDLKG-RLPR 184 (209)
T ss_pred ccEEEEEECCCCCCceEEEEEEecCCCC-CCCH
Confidence 999999985 57799999999998764 4553
No 44
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.19 E-value=7.3e-06 Score=84.72 Aligned_cols=166 Identities=20% Similarity=0.276 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCc-cceeeccCCCcccccceeeEEEeChhHHHHHhcC---ccchhhhC
Q 003250 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDS-VGIFAISQSCSGVAARACGLVSLEPTKIAEILKD---RPSWFRDC 240 (836)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~-~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lmD---~~~W~~~f 240 (836)
..+|.+.-+++++--+.++-.|-.-.. ..+. +-..| +..+.+---|.-|+|.-.+..|++.+-+ +.+|=+.+
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~---~~~~~v~~k~-~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v 79 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKK---SKDVTVWRKP-SEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLM 79 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEe---CCCEEEEEec-CCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchh
Confidence 467777778888876668999977422 1111 11111 2244556678889999999999999999 55999988
Q ss_pred CCceEeeeecCCCccHHHHH-HHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccceeecC
Q 003250 241 RSLEVFTMFPAGNAGTIELL-YTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLP 319 (836)
Q Consensus 241 ~~~~~l~~~~~g~~GalqLm-~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlP 319 (836)
-..++|+.|..+ + .++ |.=.-.+-++|-+|||.-|||+++-++|. ..|-||++.. .+|+ .|+|++..|
T Consensus 80 ~~~~Iie~Id~d---t-~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~----~~pp--g~VRgen~p 148 (202)
T cd08902 80 TSMDIIEEFEEN---C-CVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYE----EARP--NFVRGFNHP 148 (202)
T ss_pred hheeHhhhhcCC---c-EEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCC----CCCC--CeEeecccc
Confidence 777666555432 1 111 22223455789999999999999999998 7778887742 2232 899999999
Q ss_pred cceeEeecCCC--ccEEEEEEeeecccc
Q 003250 320 SGCLIRPCDGG--GSIIHIVDHLNLEAW 345 (836)
Q Consensus 320 SGclIq~~~nG--~skVtwVeH~e~d~~ 345 (836)
+||++.+.+|| .|+.||+-++|+.-+
T Consensus 149 ~g~i~~Pl~~~p~k~~~t~~lq~DLkG~ 176 (202)
T cd08902 149 CGWFCVPLKDNPSHSLLTGYIQTDLRGM 176 (202)
T ss_pred cEEEEEECCCCCCceEEEEEEEecCCCC
Confidence 99999999998 577889999887744
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.07 E-value=2.4e-05 Score=81.42 Aligned_cols=167 Identities=21% Similarity=0.292 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeec--cCCCcccccceeeEEEeChhHHHHH-hcCccchhhhCCCc
Q 003250 167 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI--SQSCSGVAARACGLVSLEPTKIAEI-LKDRPSWFRDCRSL 243 (836)
Q Consensus 167 lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~--~~~~~~eASR~~glV~m~~~~LVe~-lmD~~~W~~~f~~~ 243 (836)
.-++.+++|++.|..----|+.... .+...+..+ +.+..--.-|....+.-.+.+++.. +-++.+|-..|-..
T Consensus 10 ~~~~~~~~l~~e~~~k~k~w~~~~~----~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~Wd~~~~e~ 85 (204)
T cd08908 10 FLQDCVDGLFKEVKEKFKGWVSYST----SEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLWDVDLLDS 85 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCC----CCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHHHHHhhhe
Confidence 3467777888887755455655311 111211111 1222224557777777777777744 44567899999988
Q ss_pred eEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeee-eccCCcEEEEEeecCCCCCCCCCCCcccccceeecCcce
Q 003250 244 EVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTT-TLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGC 322 (836)
Q Consensus 244 ~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGc 322 (836)
++|+-++... .+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++-. ..| . .++|.+.+-+|+
T Consensus 86 ~vIe~ld~~~----~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~----~~P-~-~~VR~~~~~~~w 154 (204)
T cd08908 86 KVIEILDSQT----EIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHD----RAP-V-AGVRVNVLLSRY 154 (204)
T ss_pred EeeEecCCCc----eEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCcc----cCC-c-CceEEEEEeeEE
Confidence 8988887432 356666778888 7999999997765 58999999999998853 223 2 368999999999
Q ss_pred eEeecCCCccEEEEEEeeecccccccc
Q 003250 323 LIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 323 lIq~~~nG~skVtwVeH~e~d~~~vh~ 349 (836)
+|+++++|.|+||.+-|+|-- ..+|.
T Consensus 155 ~i~P~g~g~t~vtyi~~~DPg-G~iP~ 180 (204)
T cd08908 155 LIEPCGSGKSKLTYMCRIDLR-GHMPE 180 (204)
T ss_pred EEEECCCCcEEEEEEEEeCCC-CCCcH
Confidence 999999999999999999753 24554
No 46
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=97.99 E-value=4.4e-06 Score=88.71 Aligned_cols=51 Identities=25% Similarity=0.537 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 33 YTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 33 ~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
|-..-...|..+|..++||++.++.+||+.. ||+..||-.||+|||.|.|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aT----gLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEAT----GLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHh----CCchhhhhhhhhhhhhhhhh
Confidence 4455567999999999999999999999999 99999999999999999883
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.95 E-value=2.6e-05 Score=81.23 Aligned_cols=127 Identities=20% Similarity=0.277 Sum_probs=92.9
Q ss_pred ceeeEEEeChhHHHHHhcCc---cchhhhCCCceEeeeecCCCccHHHHHHHhhhccccc-cCCceeeEEeeeeeccCCc
Q 003250 214 RACGLVSLEPTKIAEILKDR---PSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTL-APARDFWTLRYTTTLDNGS 289 (836)
Q Consensus 214 R~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPL-Vp~Re~~fLRyckq~~~G~ 289 (836)
|.-+.|...+.+|.+.|.|. .+|-.++...++|+.+.... .++|.....|=|+ ++.|||..+|-....+++.
T Consensus 48 ~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~----~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 48 LGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDI----CLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCe----EEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 34557888899999999885 57888999999988766431 2344433333333 3999999999555544444
Q ss_pred EEEEEeecCCCCCCCCCCCcc-cccceeecCcceeEeec---CCCccEEEEEEeeecccccccc
Q 003250 290 LVVCERSLSGSGAGPNPASAA-QFVRAEMLPSGCLIRPC---DGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 290 waVvDvSld~~~~~~~~~~~~-~~~r~~rlPSGclIq~~---~nG~skVtwVeH~e~d~~~vh~ 349 (836)
+|.=.|++. +..|+.. .++|.+.+++|++|+++ ++|.|+||.+-|+|.--..+|.
T Consensus 124 -vi~~~SV~~----~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 124 -VVACQSVYD----KSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred -EEEEEeccc----ccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence 466677764 3344454 79999999999999999 9999999999999976445663
No 48
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.78 E-value=0.00027 Score=73.50 Aligned_cols=168 Identities=22% Similarity=0.333 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeeccCCCcccccceeeEEE-eChhHHHHHhcCccchhhhCCCce
Q 003250 166 SIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVS-LEPTKIAEILKDRPSWFRDCRSLE 244 (836)
Q Consensus 166 ~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~~~~~~~eASR~~glV~-m~~~~LVe~lmD~~~W~~~f~~~~ 244 (836)
..-++.+++|++.++...--|+...+ +.+-+.. ....+.+..---=|.+.-|. ..+.-|-++|.|+..|=+.+-...
T Consensus 9 ~~l~~~~~~~lre~~ek~kgW~~~~~-~~~vev~-~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~WD~~m~e~~ 86 (205)
T cd08907 9 AYLEDNVQCLLREASERFKGWHSAPG-PDNTELA-CKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLWDEDLLHSQ 86 (205)
T ss_pred HHHHHHHHHHHHHhhhccCCceeecC-CCCcEEE-EEeCCCCCceEEEEEEEEecCCCHHHHHHHhhchhhhhHHHHhhh
Confidence 34577889999999888888988532 1122211 00011111111112222222 345567899999999999886655
Q ss_pred EeeeecCCCc-cHHHHHHHhhhcc--ccccCCceeeEEeeee-eccCCcEEEEEeecCCCCCCCCCCCcccccceeecCc
Q 003250 245 VFTMFPAGNA-GTIELLYTQAYAP--TTLAPARDFWTLRYTT-TLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPS 320 (836)
Q Consensus 245 ~l~~~~~g~~-GalqLm~aE~~v~--SPLVp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPS 320 (836)
+|+.+.-.+. | -|+. .+.+|+|||.+||.-+ .++.|.-+|+.+|++... .++... +|+--+=|
T Consensus 87 ~Ie~Ld~n~dI~--------yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~----~pp~~g-VRa~~l~s 153 (205)
T cd08907 87 VIEALENNTEVY--------HYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDN----PQLEAG-VRAVLLTS 153 (205)
T ss_pred hheeecCCCEEE--------EEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCc----CCCCCC-eEEEEEec
Confidence 5555542211 1 1222 2568999999999865 478889999999998543 333334 89999999
Q ss_pred ceeEeecCCCccEEEEEEeeecccccccc
Q 003250 321 GCLIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 321 GclIq~~~nG~skVtwVeH~e~d~~~vh~ 349 (836)
||||++++.|.|+||-+-|++..-+ .|+
T Consensus 154 gYlIep~g~g~s~ltyi~rvD~rG~-~P~ 181 (205)
T cd08907 154 QYLIEPCGMGRSRLTHICRADLRGR-SPD 181 (205)
T ss_pred cEEEEECCCCCeEEEEEEEeCCCCC-CcH
Confidence 9999999999999999999987544 444
No 49
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=97.66 E-value=0.00031 Score=61.45 Aligned_cols=101 Identities=14% Similarity=0.137 Sum_probs=82.8
Q ss_pred CCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCeeEE
Q 003250 728 SDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVSY 807 (836)
Q Consensus 728 ~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf~i 807 (836)
|++|++++. +=.+.|+|.++++||.++-+++.+.+...-..+..+.+..+.+.++.++|-...+.=.-..+.|+++++
T Consensus 1 p~~i~i~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~ 78 (104)
T PF13426_consen 1 PDGIFILDP--DGRILYVNPAFERLFGYSREELIGKSISDFFPEEDRPEFEEQIERALEEGGSWSGEVRLRRKDGETFWV 78 (104)
T ss_dssp -SEEEEEET--TSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEEEE
T ss_pred CEEEEEECC--cCcEEehhHHHHHHHCcCHHHHcCCCcccccCcccchhhHHHHHHHHhcCCceeEEEEEEcCCCCEEEE
Confidence 567777776 578999999999999999999999999888887777888888888888776666666777899999988
Q ss_pred cCeEEeEeecCCCCceEEEEEEecC
Q 003250 808 EQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 808 e~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
...+-.+.| ++|+..+..++|.+
T Consensus 79 -~~~~~~i~~-~~g~~~~~i~~~~D 101 (104)
T PF13426_consen 79 -EVSASPIRD-EDGEITGIIGIFRD 101 (104)
T ss_dssp -EEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred -EEEEEEEEC-CCCCEEEEEEEEEE
Confidence 568888999 99999998888765
No 50
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.65 E-value=0.00054 Score=72.83 Aligned_cols=167 Identities=15% Similarity=0.169 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHhcC--CCcceEecCCCCCCCCccceeec-cCCCcccccceeeEEE-eChhHHHHHhcCcc---chhh
Q 003250 166 SIAEETLAEFLSKATG--TAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVS-LEPTKIAEILKDRP---SWFR 238 (836)
Q Consensus 166 ~lA~~am~Ell~~a~~--~~plWi~~~~~~~g~~~~~~~~~-~~~~~~eASR~~glV~-m~~~~LVe~lmD~~---~W~~ 238 (836)
..-++-.+|.+++|.. ++..|--... +.|-.++.. +. ..+.....=|+.++|. ..+..+.+.|.|.+ +|-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~W~l~~~-~~gikVy~r-~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~ 83 (235)
T cd08872 6 PEVDEKVQEQLTYALEDVGADGWQLFAE-EGEMKVYRR-EVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWET 83 (235)
T ss_pred HHHHHHHHHHHHHHHccCCCCCCEEEEe-CCceEEEEE-ECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHh
Confidence 3446778899999984 4667876422 112111110 00 0111223568888888 88899999999975 5666
Q ss_pred hCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccC-------CcEEEEEeecCCCCCCCCCCCccc
Q 003250 239 DCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDN-------GSLVVCERSLSGSGAGPNPASAAQ 311 (836)
Q Consensus 239 ~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~-------G~waVvDvSld~~~~~~~~~~~~~ 311 (836)
.|-..++|+.++.+. .+.|..+-.|=| +..|||.++|+-++.++ +.|+||..|++- +..|+...
T Consensus 84 ~~~~~~vie~l~~~~----~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h----~~~P~~~g 154 (235)
T cd08872 84 TLENFHVVETLSQDT----LIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH----DSAPLNNK 154 (235)
T ss_pred hhheeEEEEecCCCC----EEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC----ccCCCCCC
Confidence 677778888776432 245666677888 69999999999998876 789999999874 33455557
Q ss_pred ccceee---cCcceeEee------c--CCCccEEEEEEeeecc
Q 003250 312 FVRAEM---LPSGCLIRP------C--DGGGSIIHIVDHLNLE 343 (836)
Q Consensus 312 ~~r~~r---lPSGclIq~------~--~nG~skVtwVeH~e~d 343 (836)
++|.+. +=.|.+|.+ + .||.|+||++-|++--
T Consensus 155 ~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPg 197 (235)
T cd08872 155 CVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPG 197 (235)
T ss_pred eEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCC
Confidence 888875 223333333 1 5889999999999743
No 51
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.52 E-value=0.00022 Score=74.17 Aligned_cols=129 Identities=18% Similarity=0.229 Sum_probs=95.5
Q ss_pred cccccceeeEEE-eChhHHHHHhcCc---cchhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeee-
Q 003250 209 SGVAARACGLVS-LEPTKIAEILKDR---PSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTT- 283 (836)
Q Consensus 209 ~~eASR~~glV~-m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyck- 283 (836)
..-.=|+.+.+. ..+..|.++|+|. .+|...+-. ++...+.| ..++|..+..|-| |..|||.++|-..
T Consensus 47 ~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~----~~i~y~~~k~PwP-vs~RD~V~~r~~~~ 119 (207)
T cd08910 47 GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDG----ETVIYWEVKYPFP-LSNRDYVYIRQRRD 119 (207)
T ss_pred CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCC----CEEEEEEEEcCCC-CCCceEEEEEEecc
Confidence 334678888887 7999999999995 567776543 44433332 2456788888999 9999999996444
Q ss_pred eccCC--cEEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecccccccc
Q 003250 284 TLDNG--SLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 284 q~~~G--~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 349 (836)
.-.+| .|+|+..|.+. |..|....++|....-+|++|++..++.|+|+++-|.+-. ..+|.
T Consensus 120 ~~~~~~~~~iv~~~s~~~----p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~ 182 (207)
T cd08910 120 LDVEGRKIWVILARSTSL----PQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS 182 (207)
T ss_pred ccCCCCeEEEEEecCCCC----CCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH
Confidence 33344 68888888763 3345556899999999999999998899999999999842 34553
No 52
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.50 E-value=0.00038 Score=74.09 Aligned_cols=120 Identities=20% Similarity=0.160 Sum_probs=91.5
Q ss_pred cceeeEEEeChhHHHHHhcCcc---chhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCC-
Q 003250 213 ARACGLVSLEPTKIAEILKDRP---SWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNG- 288 (836)
Q Consensus 213 SR~~glV~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G- 288 (836)
=|.-+.|...+.+|.+.|.|.+ +|-..+...++|+-+... .+ ++|..+..|. -+.+|||-++|+.++..++
T Consensus 79 fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d-~~---iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~~~ 153 (235)
T cd08873 79 FCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGED-DG---IYHTTMPSLT-SEKPNDFVLLVSRRKPATDG 153 (235)
T ss_pred EEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCC-cE---EEEEEcCCCC-CCCCceEEEEEEEEeccCCC
Confidence 3555668889999999999965 677777777888877632 12 3444433333 4889999999999984333
Q ss_pred -cEEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeee
Q 003250 289 -SLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLN 341 (836)
Q Consensus 289 -~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e 341 (836)
..+|.=.|+.. +..|+.+.|+|.+.+=+|++|++.++|.|+||.+-|+|
T Consensus 154 ~~~~I~~~SV~h----~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 154 DPYKVAFRSVTL----PRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CeEEEEEeeeec----ccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 38787777652 23456678999999999999999999999999999986
No 53
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.49 E-value=5.9e-05 Score=79.63 Aligned_cols=58 Identities=29% Similarity=0.570 Sum_probs=54.1
Q ss_pred CCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
.+|||..|+..-.++|..+|.. +|||+...+++||+++ |++-.||-.||.|+|-+.||
T Consensus 188 arRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqC----nItvsQvsnwfgnkrIrykK 248 (334)
T KOG0774|consen 188 ARRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQC----NITVSQVSNWFGNKRIRYKK 248 (334)
T ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHc----Cceehhhccccccceeehhh
Confidence 4788889999999999999964 7999999999999999 99999999999999999887
No 54
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.24 E-value=0.00074 Score=68.52 Aligned_cols=135 Identities=15% Similarity=0.168 Sum_probs=93.0
Q ss_pred cccceeeEEEeChhHHHHHhcCccchhh---hCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeee-cc
Q 003250 211 VAARACGLVSLEPTKIAEILKDRPSWFR---DCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTT-LD 286 (836)
Q Consensus 211 eASR~~glV~m~~~~LVe~lmD~~~W~~---~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq-~~ 286 (836)
-.-|.+++|..++.++.+++.|.+.|.+ .|...++|+-+..+. .++|..+..|=| |..|||.+.|.... .+
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~----~i~~~~~~~p~p-vs~Rdfv~~~~~~~~~~ 115 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNE----RSVYTVIDLPWP-VKDRDMVLRSTTEQDAD 115 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCc----EEEEEEEecccc-cCCceEEEEEEEEEcCC
Confidence 4558899999999999999999766554 455556666543221 234444444444 78999998765443 33
Q ss_pred CCcEEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecccccccccccccc
Q 003250 287 NGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLY 355 (836)
Q Consensus 287 ~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpL~ 355 (836)
+|..+|.=.|.+.. .|....++|.+.+.+|+.|++.++|.|+||++-|++..-+...-+.+.+.
T Consensus 116 ~~~~~i~~~s~~~~-----~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~ 179 (195)
T cd08876 116 DGSVTITLEAAPEA-----LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFA 179 (195)
T ss_pred CCEEEEEeecCCcc-----CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHH
Confidence 67777766666532 22234788999999999999999999999999999986443333444443
No 55
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.22 E-value=0.003 Score=65.61 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=120.6
Q ss_pred HHHHHHHHHhcCC--CcceEecCCCCCCCCc-cceeec-cCCCcccccceeeEE-EeChhHHHHHhcC---ccchhhhCC
Q 003250 170 ETLAEFLSKATGT--AVDWVQMPGMKPGPDS-VGIFAI-SQSCSGVAARACGLV-SLEPTKIAEILKD---RPSWFRDCR 241 (836)
Q Consensus 170 ~am~Ell~~a~~~--~plWi~~~~~~~g~~~-~~~~~~-~~~~~~eASR~~glV-~m~~~~LVe~lmD---~~~W~~~f~ 241 (836)
+=+++|+...+.. ...|-.... |.|+.. +.+.-. ..+...-.=|..+++ .+.+..|.+.|+| +.+|-..|-
T Consensus 6 ~d~~~~~~~~~~~~~~~~W~~~~~-k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~ 84 (209)
T cd08870 6 EDLRDLVQELQEGAEGQAWQQVMD-KSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVI 84 (209)
T ss_pred HHHHHHHHHhcCcCCCCcceEhhh-ccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhee
Confidence 3355666665543 257988644 234322 333211 122333457888888 5699999999999 457888888
Q ss_pred CceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccceeecCcc
Q 003250 242 SLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSG 321 (836)
Q Consensus 242 ~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSG 321 (836)
..++|+.... .| ..++|..+..|-|+ -.||+-..|-..+..+|..+|+=.|++. +..|.. .++|.+.+=||
T Consensus 85 ~~~~le~~~~--~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~----~~~P~~-~~vRv~~~~~~ 155 (209)
T cd08870 85 EHETLEEDEK--SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPY----PSVPRS-GRKRVDDYESS 155 (209)
T ss_pred eEEEEEecCC--CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcC----CCCCCC-CcEEEEEEEeE
Confidence 8888876442 12 35688888899888 9999999987777779999898888774 233444 78999999999
Q ss_pred eeEeec--CCCccEEEEEEeeecccccccc
Q 003250 322 CLIRPC--DGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 322 clIq~~--~nG~skVtwVeH~e~d~~~vh~ 349 (836)
++|++. .+|.++++++-|.+- ...+|.
T Consensus 156 ~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~ 184 (209)
T cd08870 156 LVIRAVKGDGQGSACEVTYFHNP-DGGIPR 184 (209)
T ss_pred EEEEEecCCCCceEEEEEEEECC-CCCCCH
Confidence 999999 789999999999973 335764
No 56
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.18 E-value=7.9e-05 Score=58.32 Aligned_cols=34 Identities=35% Similarity=0.636 Sum_probs=28.7
Q ss_pred cCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhH
Q 003250 47 ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 84 (836)
Q Consensus 47 ~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK 84 (836)
.+|||+..++.+|+++. ||+.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~t----gls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQT----GLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHH----TS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHhHcc
Confidence 37999999999999999 99999999999999864
No 57
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.17 E-value=0.0021 Score=66.90 Aligned_cols=175 Identities=15% Similarity=0.172 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeec-cCCCcccccceeeEEEeChhHHHHHhcCccch---hhhC
Q 003250 165 LSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVSLEPTKIAEILKDRPSW---FRDC 240 (836)
Q Consensus 165 ~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD~~~W---~~~f 240 (836)
+.-+...|.|+++.-+. +.-|...... .| +.++-. .++....+-|.-|++..++..+.++|.|.+.. ...|
T Consensus 4 ~~~~~~~~~~~~~~l~~-~~~W~~~~~~-~~---i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 4 IRQEATIMQENLKDLDE-SDGWTLQKES-EG---IRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHHHHHHHhcccC-CCCcEEeccC-CC---eEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 44455778888887765 5579885321 22 222211 11222467788999999999998999988654 4444
Q ss_pred CCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEE-eeeeec-cCCcEEEEEeecCCCCC-----CCCCCCcc-cc
Q 003250 241 RSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTL-RYTTTL-DNGSLVVCERSLSGSGA-----GPNPASAA-QF 312 (836)
Q Consensus 241 ~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fL-Ryckq~-~~G~waVvDvSld~~~~-----~~~~~~~~-~~ 312 (836)
-..++|..+.-. -++.|..+-+|-| +..||+.+. +.+..+ ++|..+|+=.|++.... ....|... .+
T Consensus 79 ~~~~~l~~~~~~----~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~ 153 (215)
T cd08877 79 IRSKKVKQLGRA----DKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKG 153 (215)
T ss_pred eeeEEEeecCCc----eEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCc
Confidence 444555554422 1345555666777 888999985 556677 99999999999985321 11134445 78
Q ss_pred cceeecCcceeEeecCCCccEEEEEEeeecccccccc
Q 003250 313 VRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 313 ~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 349 (836)
+|.+...+|++|+++++|.|+|+++-|++-.-+-||.
T Consensus 154 vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~ 190 (215)
T cd08877 154 VRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPK 190 (215)
T ss_pred eEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCH
Confidence 9999999999999999999999999997633222664
No 58
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.17 E-value=0.0033 Score=67.24 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=92.2
Q ss_pred ceeeEEEeChhHHHHHhcCcc---chhhhCCCceEeeeecCCCccHHHHHHHhhhccc-c---ccCCceeeEEeeeeec-
Q 003250 214 RACGLVSLEPTKIAEILKDRP---SWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPT-T---LAPARDFWTLRYTTTL- 285 (836)
Q Consensus 214 R~~glV~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~S-P---LVp~Re~~fLRyckq~- 285 (836)
|.-++|...+..|.+.|.|.+ +|-..|...++|+.+.... . + .++.+ | -+..|||-.++...+.
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-~----v---Y~v~~~p~~~pvs~RDfV~~~s~~~~~ 155 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-A----I---YHVTSPSLSGHGKPQDFVILASRRKPC 155 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-E----E---EEEecCCCCCCCCCCeEEEEEEEEecc
Confidence 555788999999999999965 6777777788888877431 1 1 23332 2 5889999999888664
Q ss_pred cCC-cEEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecccccccc
Q 003250 286 DNG-SLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 286 ~~G-~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 349 (836)
++| .++|+=.|+.- |..|+...++|.+.+..|++|++.++|.|+||++-|++ +..+|.
T Consensus 156 ~~g~~yii~~~sv~~----P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~ 214 (240)
T cd08913 156 DNGDPYVIALRSVTL----PTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPY 214 (240)
T ss_pred CCCccEEEEEEEeec----CCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccH
Confidence 344 57777777653 33566778999999999999999999999999999998 335664
No 59
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.08 E-value=0.0033 Score=67.00 Aligned_cols=131 Identities=20% Similarity=0.276 Sum_probs=99.2
Q ss_pred ccceeeEEEeChhHHHHHhcCc---cchhhhCCCceEeeeecCCCccHHHHHHHhhhccc-cccCCceeeEEeeeeecc-
Q 003250 212 AARACGLVSLEPTKIAEILKDR---PSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPT-TLAPARDFWTLRYTTTLD- 286 (836)
Q Consensus 212 ASR~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~S-PLVp~Re~~fLRyckq~~- 286 (836)
+-|.-..|...+.+|.+.|.|. .+|...|...++|+-+..... +|...-.|- | +..|||-++|=-.+..
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-----vY~~~~pPw~P-vk~RD~V~~~s~~~~~~ 152 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-----IYHITCPIVNN-DKPKDLVVLVSRRKPLK 152 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-----EEEEecCCCCC-CCCceEEEEEEEEecCC
Confidence 4466667888999999999996 467778888889888774322 344332332 3 4899999987766655
Q ss_pred CCc-EEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeeccccccccccccc
Q 003250 287 NGS-LVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPEVLRPL 354 (836)
Q Consensus 287 ~G~-waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpL 354 (836)
+|. ++|.=.|+.. +..|+...++|.+.+=+|++|++.++|.|+||.+-|+| +..+|...-.+
T Consensus 153 dg~~~~I~~~SVp~----~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~~~n~ 215 (236)
T cd08914 153 DGNTYVVAVKSVIL----PSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYFAGNL 215 (236)
T ss_pred CCCEEEEEEeeccc----ccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--CccchheEEec
Confidence 886 8888888764 34566778999999999999999999999999999995 46666544444
No 60
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.05 E-value=0.00046 Score=71.66 Aligned_cols=62 Identities=35% Similarity=0.625 Sum_probs=56.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
..++.++.++..|+..++..|..+++|+...+.+|+..+ |+.++.+++||||+|++.|+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~----~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 152 KPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEET----GLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhc----CCChhhhhhhcccHHHHHHhhcc
Confidence 456778899999999999999999999999999999999 99999999999999999887544
No 61
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=96.97 E-value=0.0019 Score=67.15 Aligned_cols=129 Identities=20% Similarity=0.267 Sum_probs=97.5
Q ss_pred cccceeeEE-EeChhHHHHHhcCcc---chhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeec-
Q 003250 211 VAARACGLV-SLEPTKIAEILKDRP---SWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTL- 285 (836)
Q Consensus 211 eASR~~glV-~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~- 285 (836)
..=|+.+++ ...+..+++.|+|.+ +|...+-..++|+....- + ..++|..+..|-|+ ..||+.+.|-..+.
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~--~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~ 120 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPET--G-SEIIYWEMQWPKPF-ANRDYVYVRRYIIDE 120 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCC--C-CEEEEEEEECCCCC-CCccEEEEEEEEEcC
Confidence 356776655 788999999999964 688788777888764321 2 24678888899886 99999998877665
Q ss_pred cCCcEEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecC---CCccEEEEEEeeecccc-cccc
Q 003250 286 DNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCD---GGGSIIHIVDHLNLEAW-SVPE 349 (836)
Q Consensus 286 ~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~---nG~skVtwVeH~e~d~~-~vh~ 349 (836)
++|.++|+-.|++. +..|....++|.....||++|++.. +++|+|+++-|. |+. .+|.
T Consensus 121 ~~~~~~i~~~sv~h----p~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~ 182 (207)
T cd08911 121 ENKLIVIVSKAVQH----PSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPS 182 (207)
T ss_pred CCCEEEEEEecCCC----CCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCH
Confidence 45677888888874 2344455899999999999999984 678999988885 555 4663
No 62
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=96.90 E-value=0.00067 Score=78.45 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=56.5
Q ss_pred CCccCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHH
Q 003250 20 INKHQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 86 (836)
Q Consensus 20 ~~~~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~K 86 (836)
.++.-..||.|..||..|.+.|..+|+++++|+....+.|+.+| ||+..-|..||=|-|.|.+
T Consensus 414 ~d~~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL----~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 414 DDKMLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQL----NLELSTVINFFMNARRRSL 476 (558)
T ss_pred ccccccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCcHHHHHHHHHhhhhhcc
Confidence 33344567889999999999999999999999999999999999 9999999999999887753
No 63
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=96.04 E-value=0.043 Score=48.46 Aligned_cols=104 Identities=16% Similarity=0.200 Sum_probs=80.6
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCee
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHV 805 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf 805 (836)
+.|++|+..+. |=.+.|+|+++.+++..+-.++.+.+...-..+..+++....+.++++.|-.....-+... .|+..
T Consensus 3 ~~p~~i~v~D~--~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (110)
T PF08448_consen 3 SSPDGIFVIDP--DGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALRRALAGGEPVFFEEILLR-DGEER 79 (110)
T ss_dssp HCSSEEEEEET--TSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHHHHHHHTSEEEEEEEECT-TSCEE
T ss_pred CCCceeEEECC--CCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHHHhhccCceEEEEEEEee-cCCcE
Confidence 45677766644 6789999999999999999999999999888888999999999999998865443333333 66666
Q ss_pred EEcCeEEeEeecCCCCceEEEEEEecCce
Q 003250 806 SYEQAVAWKVLAPEDNTVHCLAFSFINWS 834 (836)
Q Consensus 806 ~ie~A~vW~v~d~~~g~~~gqAa~f~~W~ 834 (836)
+|+ ..+=-+.| ++|...|..+++.+-+
T Consensus 80 ~~~-~~~~Pi~~-~~g~~~g~~~~~~DiT 106 (110)
T PF08448_consen 80 WFE-VSISPIFD-EDGEVVGVLVIIRDIT 106 (110)
T ss_dssp EEE-EEEEEEEC-TTTCEEEEEEEEEEEC
T ss_pred EEE-EEEEEeEc-CCCCEEEEEEEEEECc
Confidence 663 35556678 9999999988887654
No 64
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=95.74 E-value=0.14 Score=45.44 Aligned_cols=105 Identities=20% Similarity=0.166 Sum_probs=76.1
Q ss_pred HhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcC-C
Q 003250 723 NLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMST-M 801 (836)
Q Consensus 723 ~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss-~ 801 (836)
.|=+.|++|+..+ .+=.+.|.|+++.+||+++-+++.+-+.-.-..+..+.+....+.+.+.++--....=+++.. .
T Consensus 6 i~~~~~~~i~~~d--~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (113)
T PF00989_consen 6 ILENSPDGIFVID--EDGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRRELRERLRQALSQGESGESFEVRFRLRD 83 (113)
T ss_dssp HHHCSSSEEEEEE--TTSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHHHHHHHHHHHHHHCCHECEEEEEEEETT
T ss_pred HHhcCCceEEEEe--CcCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhHHHHHHHHHHHHcCCCceeEEEEEEecC
Confidence 3346777777777 577999999999999999999999988887777776667777777877766544444454544 8
Q ss_pred CCeeEEcCeEEeEeecCCCCceEEEEEEec
Q 003250 802 GRHVSYEQAVAWKVLAPEDNTVHCLAFSFI 831 (836)
Q Consensus 802 Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~ 831 (836)
|+.++++- .+=.+.| .+|+..|.-.+|.
T Consensus 84 g~~~~~~~-~~~~~~~-~~~~~~~~~~~~~ 111 (113)
T PF00989_consen 84 GRPRWVEV-RASPVRD-EDGQIIGILVIFR 111 (113)
T ss_dssp SCEEEEEE-EEEEEEE-TTEEEEEEEEEEE
T ss_pred CcEEEEEE-EEEEEEe-CCCCEEEEEEEEE
Confidence 88888742 3334556 7788778776664
No 65
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=95.45 E-value=0.66 Score=48.67 Aligned_cols=174 Identities=13% Similarity=0.257 Sum_probs=103.2
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhcccccccchh
Q 003250 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADFNVDAY 481 (836)
Q Consensus 404 ~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~~d~~ 481 (836)
..++|.... ..+++.|..+++.+..|. + .++..-+ |.+|+.||+||.+ +|.+||-. +.
T Consensus 20 ~~~gWk~~k--~~~~~~v~~k~~~~~~gk------------l--~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~-~~-- 79 (204)
T cd08904 20 DTSGWKVVK--TSKKITVSWKPSRKYHGN------------L--YRVEGII-PESPAKLIQFMYQPEHRIKWDKS-LQ-- 79 (204)
T ss_pred cccCCeEEe--cCCceEEEEEEcCCCCce------------E--EEEEEEe-cCCHHHHHHHHhccchhhhhccc-cc--
Confidence 348998773 348899999987643332 1 2444556 8999999999997 99999963 11
Q ss_pred hhhhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceEEEeeecccCCCCCCceeEE
Q 003250 482 SAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIHLLQICSGVDENAVGACSEL 561 (836)
Q Consensus 482 s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~~~Gs~s~v 561 (836)
+ .+.+-+| +...+|...+..+.. -.-+-+||.+.+|-.-..+ - | .++
T Consensus 80 ------~---------------~~iie~I----d~~T~I~~~~~~~~~---~~~vspRDfV~vr~~~r~~--~-~--~~i 126 (204)
T cd08904 80 ------V---------------YKMLQRI----DSDTFICHTITQSFA---MGSISPRDFVDLVHIKRYE--G-N--MNI 126 (204)
T ss_pred ------c---------------eeeEEEe----CCCcEEEEEeccccc---CCcccCceEEEEEEEEEeC--C-C--EEE
Confidence 1 2444444 555577766654311 1125578998888732223 1 3 233
Q ss_pred E-EeeccCC----CCCCC--cccCCccEEecCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCCCceEEE
Q 003250 562 V-FAPIDEM----FPDDG--PLLPSGFRIIPLDSKTPDTPDTLTAHRTLDLTSSLEVGPATNPAAGDSSSCHHTRSVLTI 634 (836)
Q Consensus 562 V-yAPvD~~----ds~~v--~LLPSGF~I~P~~~~~~~~~Dg~~~~rtldlas~le~~~~~~~~~~~~~~~~~~gSlLTv 634 (836)
+ +.-|+-+ .+.+| -..|+||.|.|+... .++|.||.
T Consensus 127 i~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~-------------------------------------p~~t~l~~ 169 (204)
T cd08904 127 VSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPEN-------------------------------------PAYSKLVM 169 (204)
T ss_pred EEEEecccCCCCCCCCcEEEeeeccEEEEEECCCC-------------------------------------CCceEEEE
Confidence 3 3334333 24444 378999999994110 14688899
Q ss_pred Eeecccccc-chhhHHhHhhhhHHHHHHHHHHHHHHh
Q 003250 635 AFQFPFESN-LQDNVATMARQYVRSVISSVQRVAMAI 670 (836)
Q Consensus 635 AFQ~l~~~~-~~~sva~~a~~~v~~v~~tvqri~~Al 670 (836)
-+|+=.... +..-|..+..+ ++++.....+.||
T Consensus 170 ~~~~DlkG~lP~~vv~~~~~~---~~~~f~~~~~~~~ 203 (204)
T cd08904 170 FVQPELRGNLSRSVIEKTMPT---NLVNLILDAKDGI 203 (204)
T ss_pred EEEeCCCCCCCHHHHHHHhHH---HHHHHHHHHHHhc
Confidence 888666653 44434333222 3445555555554
No 66
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.18 E-value=0.011 Score=74.34 Aligned_cols=62 Identities=21% Similarity=0.341 Sum_probs=56.8
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
++++|++++..|+..+...|....||.....+.|...+ +++++.|.+||||-|.|.|+..++
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~----~~~~~~i~vw~qna~~~s~k~~~n 964 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPI----GLPKRVIQVWFQNARAKSKKAKLN 964 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccc----cCCcchhHHhhhhhhhhhhhhhhc
Confidence 46678999999999999999999999999999999999 999999999999999999986653
No 67
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=94.81 E-value=3.2 Score=42.94 Aligned_cols=57 Identities=19% Similarity=0.383 Sum_probs=42.9
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhhhhhccccc
Q 003250 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLREHRSEWADF 476 (836)
Q Consensus 404 ~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l 476 (836)
..++|.... ..++|+|.+++..+ +. .+.--++.+-+ +.+|+.|++.|.|.|.+||..
T Consensus 17 ~~~~W~~~~--~~~gi~I~~k~~~~--~~-----------~l~~~K~~~~v-~a~~~~v~~~l~d~r~~Wd~~ 73 (197)
T cd08869 17 KSKGWVSVS--SSDHVELAFKKVDD--GH-----------PLRLWRASTEV-EAPPEEVLQRILRERHLWDDD 73 (197)
T ss_pred ccCCceEEe--cCCcEEEEEEeCCC--CC-----------cEEEEEEEEEe-CCCHHHHHHHHHHHHhccchh
Confidence 468998654 35699999988642 11 23344777888 899999999999999999974
No 68
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=94.58 E-value=2.6 Score=44.12 Aligned_cols=65 Identities=23% Similarity=0.430 Sum_probs=44.4
Q ss_pred HHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhh
Q 003250 394 RGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRS 471 (836)
Q Consensus 394 ~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~Rs 471 (836)
..|..-+ ...++|.... ..++|+|..++..+ +.+...++...++.+||+.+|++|.| .|.
T Consensus 13 ~~~~~~~--~~~~~W~~~~--~~~gi~iy~r~~~~--------------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~ 74 (222)
T cd08871 13 EEFKKLC--DSTDGWKLKY--NKNNVKVWTKNPEN--------------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRK 74 (222)
T ss_pred HHHHHHh--cCCCCcEEEE--cCCCeEEEEeeCCC--------------CceEEEEEEEEeCCCCHHHHHHHHHChhhhh
Confidence 3444333 2356899764 24679998877531 13444555565657999999999998 899
Q ss_pred ccccc
Q 003250 472 EWADF 476 (836)
Q Consensus 472 eWd~l 476 (836)
+||..
T Consensus 75 ~Wd~~ 79 (222)
T cd08871 75 TWDSN 79 (222)
T ss_pred hhhhh
Confidence 99974
No 69
>PRK13557 histidine kinase; Provisional
Probab=94.30 E-value=0.32 Score=55.69 Aligned_cols=112 Identities=10% Similarity=0.020 Sum_probs=77.9
Q ss_pred hHHHHhh-cCCCceeccCCC-CCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCee
Q 003250 719 SVLKNLW-QHSDAILCCSLK-SMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGI 796 (836)
Q Consensus 719 ~~~~~l~-~~~~avl~h~~~-~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~Gv 796 (836)
..|..+. +.+++|+-.+.. .|-.+.|+|+|+.++|.++.+|+.+.+...-..+...++....+.+....|-.....-.
T Consensus 30 ~~~~~~~~~~~~~i~v~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (540)
T PRK13557 30 DIFFAAVETTRMPMIVTDPNQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVAEVRDAIAERREIATEIL 109 (540)
T ss_pred HHHHHHHHhCcCcEEEEcCCCCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCCCCHHHHHHHHHHHHcCCCceEEEE
Confidence 3444444 567777777653 46789999999999999999999999987666555555555556666665543322234
Q ss_pred EEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 797 CMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 797 Riss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
...+.|+.++++ ..+-.+.| ++|...|...+..+
T Consensus 110 ~~~~~G~~~~~~-~~~~~i~~-~~g~~~~~~~~~~d 143 (540)
T PRK13557 110 NYRKDGSSFWNA-LFVSPVYN-DAGDLVYFFGSQLD 143 (540)
T ss_pred EEeCCCCEEEEE-EEEEEeEC-CCCCEEEEEEEecC
Confidence 467899999886 45556888 88888777665543
No 70
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=93.68 E-value=7.7 Score=41.00 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=43.1
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhhhhhccccc
Q 003250 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLREHRSEWADF 476 (836)
Q Consensus 403 s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l 476 (836)
-...||.... +.++|.|.++|..+ + . |.-.+.|. +=.+.+|.+.|+|.|+| |..||..
T Consensus 24 ek~kgW~~~~--~~~~vev~~kk~~d-~-~--------~l~lwk~s---~ei~~~p~~vl~rvL~d-R~~WD~~ 81 (205)
T cd08907 24 ERFKGWHSAP--GPDNTELACKKVGD-G-H--------PLRLWKVS---TEVEAPPSVVLQRVLRE-RHLWDED 81 (205)
T ss_pred hccCCceeec--CCCCcEEEEEeCCC-C-C--------ceEEEEEE---EEecCCCHHHHHHHhhc-hhhhhHH
Confidence 5667998764 36789999998642 2 2 33355444 55678999999999999 9999975
No 71
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=91.84 E-value=1.1 Score=46.98 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=39.7
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhccccc
Q 003250 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (836)
Q Consensus 403 s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (836)
-..++|. +. ...++|+|.++... + . .-++++. +-+ ++||+.|+++|.| .|.+||..
T Consensus 19 ~~~~gW~-l~-~~~~gI~Vy~k~~~--~-~---------~~~~~ge---~~v-~as~~~v~~ll~D~~~r~~Wd~~ 76 (205)
T cd08874 19 QATAGWS-YQ-CLEKDVVIYYKVFN--G-T---------YHGFLGA---GVI-KAPLATVWKAVKDPRTRFLYDTM 76 (205)
T ss_pred hccCCcE-EE-ecCCCEEEEEecCC--C-C---------cceEEEE---EEE-cCCHHHHHHHHhCcchhhhhHHh
Confidence 4677994 43 34578999987642 1 2 1245543 245 8999999999998 89999974
No 72
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=91.37 E-value=0.13 Score=57.47 Aligned_cols=57 Identities=25% Similarity=0.287 Sum_probs=47.9
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
.|++..+.......|+....+ .|||+...+..|+++. ||+..||..||-|.|-|..+
T Consensus 240 ~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~T----GLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 240 WRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQT----GLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhc----CCCcccCCchhhhcccccCC
Confidence 445567888999999877443 5899999999999999 99999999999999977444
No 73
>PRK13559 hypothetical protein; Provisional
Probab=91.34 E-value=1.2 Score=49.04 Aligned_cols=112 Identities=13% Similarity=-0.009 Sum_probs=74.9
Q ss_pred hHHHHhh-cCCCceeccCCC-CCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCee
Q 003250 719 SVLKNLW-QHSDAILCCSLK-SMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGI 796 (836)
Q Consensus 719 ~~~~~l~-~~~~avl~h~~~-~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~Gv 796 (836)
..++.++ +.+++|+-++.+ .+-.+.|.|.++.+||.++.+++.+.+.+....+....+....+..+.+.|-.....-.
T Consensus 43 ~~~~~~~e~~~~~i~i~D~~~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 122 (361)
T PRK13559 43 RLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAATDPIAVAKIRAAIAAEREIVVELL 122 (361)
T ss_pred hHHHHHHHhCCCcEEEecCCCCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcCCCCCHHHHHHHHHHhccCCceEEEEE
Confidence 4444444 778888877754 36679999999999999999999998876544444444445555666665544333344
Q ss_pred EEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 797 CMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 797 Riss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
...+.|+.|+++-. +=-+.| ++|...|...++.+
T Consensus 123 ~~~~dG~~~~~~~~-~~~i~d-~~G~~~~~v~~~~D 156 (361)
T PRK13559 123 NYRKDGEPFWNALH-LGPVYG-EDGRLLYFFGSQWD 156 (361)
T ss_pred EEcCCCCEEEEEEE-EEEEEc-CCCCEEEeeeeeee
Confidence 56788888877432 223457 78888776666554
No 74
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=90.97 E-value=0.44 Score=45.66 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=55.5
Q ss_pred CCcccCCHHHHHH-HHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHHHHHHhhHHHHHhhH
Q 003250 28 GKYVRYTAEQVEA-LERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNK 106 (836)
Q Consensus 28 rkR~r~T~~Ql~~-LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~~l~~~n~~l~~~n~ 106 (836)
++|.+||.++... +...+. +. ....++|+++ |+++.++.-|.+. .+.......-............
T Consensus 8 ~~rr~ys~EfK~~aV~~~~~-~g----~sv~evA~e~----gIs~~tl~~W~r~----y~~~~~~~~~~~~~~~~~~~~~ 74 (121)
T PRK09413 8 EKRRRRTTQEKIAIVQQSFE-PG----MTVSLVARQH----GVAASQLFLWRKQ----YQEGSLTAVAAGEQVVPASELA 74 (121)
T ss_pred CCCCCCCHHHHHHHHHHHHc-CC----CCHHHHHHHH----CcCHHHHHHHHHH----HhhcccccccccccCCchhHHH
Confidence 4456788887554 333333 22 2467789999 9999999999532 2111100000000000111223
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 107 LLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 107 ~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
.+.+++.+|.+++.+|++||+-||.-+.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788899999999999999987764
No 75
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=90.67 E-value=0.33 Score=51.00 Aligned_cols=111 Identities=14% Similarity=0.085 Sum_probs=80.7
Q ss_pred ccchhhhCC--CceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEee-eeeccC-CcEEEEEeecCCCCCCCCCC-
Q 003250 233 RPSWFRDCR--SLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRY-TTTLDN-GSLVVCERSLSGSGAGPNPA- 307 (836)
Q Consensus 233 ~~~W~~~f~--~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRy-ckq~~~-G~waVvDvSld~~~~~~~~~- 307 (836)
..+|...+- .+++++....+.++..++.|.+..+|-| +..|||..|.. +...+. ..++|+..+++.. ..|
T Consensus 65 E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~----~~p~ 139 (208)
T cd08864 65 EKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPP----LVES 139 (208)
T ss_pred hhhchhhhccceeEEeeecCCCccceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCC----cCCc
Confidence 347777777 6888888776655555667777788888 99999999999 666652 6778999998743 222
Q ss_pred CcccccceeecCcceeEeecCC---CccEEEEEEeeecccc-cccc
Q 003250 308 SAAQFVRAEMLPSGCLIRPCDG---GGSIIHIVDHLNLEAW-SVPE 349 (836)
Q Consensus 308 ~~~~~~r~~rlPSGclIq~~~n---G~skVtwVeH~e~d~~-~vh~ 349 (836)
....++|.+ -=||..|+..|. +-..|+|.==...|+. .||.
T Consensus 140 ~~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 140 LYENAVLGR-YASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPR 184 (208)
T ss_pred cCCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcH
Confidence 334788888 679999998875 4789999983344455 4664
No 76
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=90.37 E-value=15 Score=38.38 Aligned_cols=72 Identities=19% Similarity=0.368 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHH
Q 003250 385 LRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVR 464 (836)
Q Consensus 385 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~ 464 (836)
|++.|. ++..|...+.. .++|.... ..++|+|..|...+ +.+++-++-..+ +.|+..++.
T Consensus 4 ~~~~~~-~~~~~~~~l~~--~~~W~~~~--~~~~i~v~~r~~~~--------------~~~~~~k~e~~i-~~~~~~~~~ 63 (215)
T cd08877 4 IRQEAT-IMQENLKDLDE--SDGWTLQK--ESEGIRVYYKFEPD--------------GSLLSLRMEGEI-DGPLFNLLA 63 (215)
T ss_pred HHHHHH-HHHHHHhcccC--CCCcEEec--cCCCeEEEEEeCCC--------------CCEEEEEEEEEe-cCChhHeEE
Confidence 344443 34456656655 77899774 34689999988641 247899999999 789999999
Q ss_pred HHhh--hhhccccc
Q 003250 465 FLRE--HRSEWADF 476 (836)
Q Consensus 465 FLRd--~RseWd~l 476 (836)
.|+| .+.+|+..
T Consensus 64 vl~d~~~~~~W~p~ 77 (215)
T cd08877 64 LLNEVELYKTWVPF 77 (215)
T ss_pred EEehhhhHhhhccc
Confidence 9998 99999975
No 77
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=90.17 E-value=2.5 Score=45.33 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCcccccCCC-----ccEEEEEecCCCCCCCCCCCCCCCCCC-eEEEEeeecccccC
Q 003250 384 VLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGA-----EDVIIAVNSTKSLSTASNPTNSLAFLG-GILCAKASMLLQNV 457 (836)
Q Consensus 384 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~-----~dVrv~~r~s~~~~g~~~~~~~~~~~g-~VL~A~tS~wL~pv 457 (836)
-++.||..-+.-|- .+.-...--|.+..+.+. |....+..+. . +..|+| .+..+-++-+. ++
T Consensus 3 ~~~~lA~~am~Ell-~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~---~-------~~~~~~~~~eASR~~glV-~m 70 (229)
T cd08875 3 GLLELAEEAMDELL-KLAQGGEPLWIKSPGMKPEILNPDEYERMFPRH---G-------GSKPGGFTTEASRACGLV-MM 70 (229)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCCceecCCCCccccCHHHHhhcccCc---C-------CCCCCCCeEEEEeeeEEE-ec
Confidence 68899999999998 455566778998765532 2211111111 1 111344 68888888888 89
Q ss_pred ChhHHHHHHhhhhhccccc-ccchhhhhhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccc
Q 003250 458 PPALLVRFLREHRSEWADF-NVDAYSAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAF 536 (836)
Q Consensus 458 pp~~lf~FLRd~RseWd~l-~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~ 536 (836)
.|..|.+.|.|. .+|-.+ ..++..+..++....+..| ..+..+.|+..+-+.++ --+
T Consensus 71 ~~~~lVe~lmD~-~kW~~~Fp~iv~~a~tl~vistg~~g-------------------~~~G~lqlmyael~~pS--pLV 128 (229)
T cd08875 71 NAIKLVEILMDV-NKWSELFPGIVSKAKTLQVISTGNGG-------------------NRNGTLQLMYAELQVPS--PLV 128 (229)
T ss_pred CHHHHHHHHhCh-hhhhhhhhhhcceeeEEEEeeCCCCC-------------------CCCceehhhhhhcccCc--ccc
Confidence 999999999992 234432 1122222222222222222 22336666666544332 336
Q ss_pred cCCceEEEeeecccCCCCCCceeEEE-EeeccCC----CCC---CCcccCCccEEec
Q 003250 537 VSRDIHLLQICSGVDENAVGACSELV-FAPIDEM----FPD---DGPLLPSGFRIIP 585 (836)
Q Consensus 537 ~~~~~liLQe~s~~De~~~Gs~s~vV-yAPvD~~----ds~---~v~LLPSGF~I~P 585 (836)
..|+..+|.-|...+ .|. .+| -=.+|.. .+. .--.+||||-|-|
T Consensus 129 p~Re~~fLRyc~~l~---dG~--w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~ 180 (229)
T cd08875 129 PTREFYFLRYCKQLE---DGL--WAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQD 180 (229)
T ss_pred cCCeEEEEEEEEEeC---CCe--EEEEEEeecccccCCCCCCccEEEEecCcEEEEE
Confidence 688999999986544 563 333 2244432 122 2247999999998
No 78
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=89.85 E-value=6.8 Score=38.70 Aligned_cols=126 Identities=18% Similarity=0.226 Sum_probs=73.3
Q ss_pred CCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhcccccccchhhh
Q 003250 406 DGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADFNVDAYSA 483 (836)
Q Consensus 406 ~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~~d~~s~ 483 (836)
++|..+.. .++|+|..++..+. .+...++..-+ +.|+..|+++|.| .|.+||..-. .
T Consensus 15 ~~W~~~~~--~~~v~vy~~~~~~~--------------~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~~~---~- 73 (193)
T cd00177 15 EGWKLVKE--KDGVKIYTKPYEDS--------------GLKLLKAEGVI-PASPEQVFELLMDIDLRKKWDKNFE---E- 73 (193)
T ss_pred CCeEEEEE--CCcEEEEEecCCCC--------------CceeEEEEEEE-CCCHHHHHHHHhCCchhhchhhcce---E-
Confidence 58998753 33788887765321 22445556667 7899999999996 8999996311 1
Q ss_pred hhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceEEEeeecccCCCCCCceeEEEE
Q 003250 484 ASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIHLLQICSGVDENAVGACSELVF 563 (836)
Q Consensus 484 ~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~~~Gs~s~vVy 563 (836)
..++..+.. +..|--.+....-+ +-+|+++++..+ ..++ .|. -+++.
T Consensus 74 --------------------~~vl~~~~~----~~~i~~~~~~~p~p-----~~~Rdfv~~~~~-~~~~--~~~-~~~~~ 120 (193)
T cd00177 74 --------------------FEVIEEIDE----HTDIIYYKTKPPWP-----VSPRDFVYLRRR-RKLD--DGT-YVIVS 120 (193)
T ss_pred --------------------EEEEEEeCC----CeEEEEEEeeCCCc-----cCCccEEEEEEE-EEcC--CCe-EEEEE
Confidence 223333322 12333333333211 457899999875 4553 343 46777
Q ss_pred eeccCCC----CCCC--cccCCccEEec
Q 003250 564 APIDEMF----PDDG--PLLPSGFRIIP 585 (836)
Q Consensus 564 APvD~~d----s~~v--~LLPSGF~I~P 585 (836)
.+||... ++.| .++++||.|-|
T Consensus 121 ~Si~~~~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 121 KSVDHDSHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred eecCCCCCCCCCCcEEEEEEccEEEEEE
Confidence 7777641 1222 24567777766
No 79
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=89.77 E-value=0.093 Score=44.21 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=31.1
Q ss_pred HHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccch
Q 003250 37 QVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 82 (836)
Q Consensus 37 Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRR 82 (836)
-++-|++.|...+++....-..|..+. +|+..||+-||-.|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS----~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKS----RMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHT----T--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHH----CCCHHHHHHHHHHhc
Confidence 356799999999999999999999999 999999999996554
No 80
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=89.73 E-value=5.8 Score=32.22 Aligned_cols=106 Identities=11% Similarity=0.123 Sum_probs=63.1
Q ss_pred HHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEE-c
Q 003250 722 KNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICM-S 799 (836)
Q Consensus 722 ~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRi-s 799 (836)
+.++ +.+++++..+. +-.+.|.|.++.++|.++..++.+.+......+.........+.++.+.+......-+++ .
T Consensus 6 ~~~~~~~~~~~~~~d~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T TIGR00229 6 RAIFESSPDAIIVIDL--EGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVRERIERLLEGEREPVSEERRVRR 83 (124)
T ss_pred HHHHhhCCceEEEEcC--CCcEEEEchHHHHHhCCChHHhcCcchhhhcChhhhHHHHHHHHHHHcCCCCCcceEeeeEc
Confidence 3344 44556665543 567899999999999999999988777665555554544555556655332222223343 5
Q ss_pred CCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 800 TMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 800 s~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
..|+.+++.- ....+. ++|...+...++.+
T Consensus 84 ~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~d 113 (124)
T TIGR00229 84 KDGSEIWVEV--SVSPIR-TNGGELGVVGIVRD 113 (124)
T ss_pred CCCCEEEEEE--EEeehh-hCCCeeEEEEEeee
Confidence 6666665532 122233 45666666655543
No 81
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=89.20 E-value=21 Score=36.95 Aligned_cols=57 Identities=18% Similarity=0.372 Sum_probs=39.1
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHh-h--hhhccccc
Q 003250 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLR-E--HRSEWADF 476 (836)
Q Consensus 403 s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLR-d--~RseWd~l 476 (836)
-...+|.... +..++|.|.++...+ . +-+ .++...+ ++||+.||++|- | .|.+||..
T Consensus 21 ~~~~~W~l~~-~~~~~i~i~~r~~~~---~----------~~~--~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 21 LTDPGWKLEK-NTTWGDVVYSRNVPG---V----------GKV--FRLTGVL-DCPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred hcCCCceEEE-ecCCCCEEEEEEcCC---C----------ceE--EEEEEEE-cCCHHHHHHHHHcCccccceecCc
Confidence 3355998664 333489999988531 1 223 4445667 899999998765 4 89999975
No 82
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=88.01 E-value=7.9 Score=29.54 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=54.7
Q ss_pred CceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEE-cCCCCeeEE
Q 003250 729 DAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICM-STMGRHVSY 807 (836)
Q Consensus 729 ~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRi-ss~Grrf~i 807 (836)
++++.++ .+-.+.|.|.++.++|.++..++.+.+......+..+......+.++.+.+-... .-+++ ...|...++
T Consensus 3 ~~i~~~d--~~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (103)
T cd00130 3 DGVIVLD--LDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVT-LEVRLRRKDGSVIWV 79 (103)
T ss_pred ceEEEEC--CCCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCccchHHHHHHHHHHhcCcCeE-EEEEEEccCCCEEEE
Confidence 3444444 3456789999999999999999988776655555555545555555554322111 12222 233555554
Q ss_pred cCeEEeEeecCCCCceEEEEEEe
Q 003250 808 EQAVAWKVLAPEDNTVHCLAFSF 830 (836)
Q Consensus 808 e~A~vW~v~d~~~g~~~gqAa~f 830 (836)
. ..+-.+.+ .+|...+...++
T Consensus 80 ~-~~~~~~~~-~~~~~~~~~~~~ 100 (103)
T cd00130 80 L-VSLTPIRD-EGGEVIGLLGVV 100 (103)
T ss_pred E-EEEEEEec-CCCCEEEEEEEE
Confidence 3 12223345 556666655544
No 83
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=87.97 E-value=0.97 Score=47.89 Aligned_cols=110 Identities=23% Similarity=0.320 Sum_probs=82.8
Q ss_pred eChhHHHHHhcC---ccchhhhCCCceEeeeec-CCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEEee
Q 003250 221 LEPTKIAEILKD---RPSWFRDCRSLEVFTMFP-AGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCERS 296 (836)
Q Consensus 221 m~~~~LVe~lmD---~~~W~~~f~~~~~l~~~~-~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvS 296 (836)
+.|..|-++|+| +.+|=.+--.+++|+..+ +|+ +++|-+++.|.|+- .||+-++|---..++-.-+||-.|
T Consensus 64 vtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~----~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k~~~i~s~~ 138 (219)
T KOG2761|consen 64 VTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGT----EVVYWVKKFPFPMS-NRDYVYVRRWWESDEKDYYIVSKS 138 (219)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCc----eEEEEEEeCCcccC-CccEEEEEEEEecCCceEEEEEec
Confidence 568899999999 468888888889998887 442 46788888998875 599999988777777777888887
Q ss_pred cCCCCCCCCCCCcccccceeecCcceeEe-----ecCCC-ccEEEEEEe
Q 003250 297 LSGSGAGPNPASAAQFVRAEMLPSGCLIR-----PCDGG-GSIIHIVDH 339 (836)
Q Consensus 297 ld~~~~~~~~~~~~~~~r~~rlPSGclIq-----~~~nG-~skVtwVeH 339 (836)
+.. +..|+...++|..-.=||.+|| +=++| .|.++|++|
T Consensus 139 v~h----~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 139 VQH----PSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred ccC----CCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 763 4455555678888999999999 44454 344555543
No 84
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=87.29 E-value=3.2 Score=50.94 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=76.9
Q ss_pred HhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCC
Q 003250 723 NLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMG 802 (836)
Q Consensus 723 ~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~G 802 (836)
.+=+.|++|+..+. +=.++|.|+++.++|.++.+++.+.+..--..+...........++.++|-...+.-....+.|
T Consensus 160 il~~~~~~i~~~D~--~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G 237 (779)
T PRK11091 160 FLDASPDLVYYRNE--DGEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPEAAEKVIETDEKVFRHNVSLTYEQWLDYPDG 237 (779)
T ss_pred HHhcCcceEEEECC--CCcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCC
Confidence 34477888887765 6689999999999999999999998766555554444444555666676655444444456788
Q ss_pred CeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 803 RHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 803 rrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
+.++++ ..+..+.| ++|...|...++.+
T Consensus 238 ~~~~~~-~~~~pi~~-~~g~~~g~v~~~~D 265 (779)
T PRK11091 238 RKACFE-LRKVPFYD-RVGKRHGLMGFGRD 265 (779)
T ss_pred CEEEEE-EEeeeEEc-CCCCEEEEEEEEee
Confidence 888875 35566778 89999888877765
No 85
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=86.64 E-value=2.7 Score=35.88 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 003250 82 RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCEN 126 (836)
Q Consensus 82 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~EN 126 (836)
+++.|++.....++.....|..+|..|++++..|..+...|..+|
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556666666666777667777777777766666666666666554
No 86
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=86.27 E-value=49 Score=35.06 Aligned_cols=57 Identities=14% Similarity=0.320 Sum_probs=40.2
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhccccc
Q 003250 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (836)
Q Consensus 403 s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (836)
-...+|..-... +||.|..+.++..+|.. ..++ +|+ +.-|+.|++|+.+ +|.+||..
T Consensus 20 ~~~~~Wkl~k~~--~~~~v~~k~~~ef~gkl---~R~E---gvv---------~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 20 ILEEEWRVAKKS--KDVTVWRKPSEEFGGYL---YKAQ---GVV---------EDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred ccccCcEEEEeC--CCEEEEEecCCcCCCce---EEEE---EEe---------cCCHHHHHHHHhcccchhcccch
Confidence 367899865433 89999999886555431 0111 343 5778999999998 89999974
No 87
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=85.73 E-value=13 Score=37.93 Aligned_cols=132 Identities=14% Similarity=0.153 Sum_probs=72.6
Q ss_pred CCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhH-HHHHHhh--hhhcccccccchh
Q 003250 405 DDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPAL-LVRFLRE--HRSEWADFNVDAY 481 (836)
Q Consensus 405 ~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~-lf~FLRd--~RseWd~l~~d~~ 481 (836)
.++|..... +.+++.+..+... ++ ..+-..++...+ +.+|+. +.++|.| .|.+||..
T Consensus 18 ~~~W~~~~~-~~~~~~~~~~~~~--~~-----------~~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~----- 77 (206)
T smart00234 18 EPGWVLSSE-NENGDEVRSILSP--GR-----------SPGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKN----- 77 (206)
T ss_pred CCccEEccc-cCCcceEEEEccC--CC-----------CceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchh-----
Confidence 468997653 2334444444332 11 135677888888 678875 6678887 89999975
Q ss_pred hhhhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceEEEeeecccCCCCCCceeEE
Q 003250 482 SAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIHLLQICSGVDENAVGACSEL 561 (836)
Q Consensus 482 s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~~~Gs~s~v 561 (836)
. . ..+.+-.+. .++.|........- .-+-+||..++.-+. .+ ..|++ .|
T Consensus 78 ~----~---------------~~~~ie~~~----~~~~i~~~~~~~~~----~p~~~RDfv~~r~~~-~~--~~~~~-vi 126 (206)
T smart00234 78 V----A---------------KAETLEVID----NGTVIYHYVSKFVA----GPVSPRDFVFVRYWR-EL--VDGSY-AV 126 (206)
T ss_pred c----c---------------cEEEEEEEC----CCCeEEEEEEeccc----CcCCCCeEEEEEEEE-Ec--CCCcE-EE
Confidence 1 0 123343332 22333333322211 124568898888753 44 34542 23
Q ss_pred EEeeccCC----CCCCC--cccCCccEEecCC
Q 003250 562 VFAPIDEM----FPDDG--PLLPSGFRIIPLD 587 (836)
Q Consensus 562 VyAPvD~~----ds~~v--~LLPSGF~I~P~~ 587 (836)
+..-++-+ .+.+| .++++||.|-|++
T Consensus 127 ~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 127 VDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred EEEECCCCCCCCCCCceEEEEeceEEEEEECC
Confidence 33345443 23333 5899999999953
No 88
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=85.70 E-value=13 Score=39.19 Aligned_cols=129 Identities=19% Similarity=0.301 Sum_probs=68.8
Q ss_pred CCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhhhhhcccccccchhhhhh
Q 003250 406 DGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLREHRSEWADFNVDAYSAAS 485 (836)
Q Consensus 406 ~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l~~d~~s~~~ 485 (836)
.+|..+. ..+++.+..+|..+ +. | +=--++++=+ +.||..|+..+-+.|.+||.. +.
T Consensus 27 k~w~~~~--~~~~~e~~ykK~~d--~~--------~---lk~~r~~~ei-~~~p~~VL~~vl~~R~~WD~~---~~---- 83 (205)
T cd08909 27 KGWISCS--SSDNTELAYKKVGD--GN--------P---LRLWKVSVEV-EAPPSVVLNRVLRERHLWDED---FL---- 83 (205)
T ss_pred cCCcccC--CcCCeEEEEecCCC--CC--------c---eEEEEEEEEe-CCCHHHHHHHHHhhHhhHHhh---cc----
Confidence 4777664 35778888888642 22 1 2234457788 677776655555579999964 11
Q ss_pred hhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceEEEeeecccCCCCCCceeEEEEee
Q 003250 486 LKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIHLLQICSGVDENAVGACSELVFAP 565 (836)
Q Consensus 486 ~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~~~Gs~s~vVyAP 565 (836)
+ ..++-.| +..+-|=-.+++...+ +-+||..+++-- .+|+ ..|+|.++-++
T Consensus 84 --~---------------~~~ie~l----d~~tdi~~y~~~~~~P-----~~~RD~v~~R~w-~~~~-~~G~~vi~~~S- 134 (205)
T cd08909 84 --Q---------------WKVVETL----DKQTEVYQYVLNCMAP-----HPSRDFVVLRSW-RTDL-PKGACSLVSVS- 134 (205)
T ss_pred --e---------------eEEEEEe----CCCcEEEEEEeecCCC-----CCCCEEEEEEEE-EEeC-CCCcEEEEEec-
Confidence 1 1222222 1112222223323221 336788888773 3553 57886544444
Q ss_pred ccCCC-C--CC--CcccCCccEEecC
Q 003250 566 IDEMF-P--DD--GPLLPSGFRIIPL 586 (836)
Q Consensus 566 vD~~d-s--~~--v~LLPSGF~I~P~ 586 (836)
|+-.. | .+ +.++-+||.|-|+
T Consensus 135 v~H~~~p~~g~VRa~~~~~gylI~P~ 160 (205)
T cd08909 135 VEHEEAPLLGGVRAVVLDSQYLIEPC 160 (205)
T ss_pred CCCCcCCCCCcEEEEEEcCcEEEEEC
Confidence 55432 1 12 3455677777773
No 89
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=84.90 E-value=3.5 Score=46.32 Aligned_cols=107 Identities=12% Similarity=-0.010 Sum_probs=68.0
Q ss_pred HHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCC
Q 003250 722 KNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTM 801 (836)
Q Consensus 722 ~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~ 801 (836)
..+=+.|++|+.++. +..+.|.|.++.++|+++-+++.+.+...-..+....+....+.+....|-.....-.+..+.
T Consensus 8 ~i~~~~~~~i~~~d~--~g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (494)
T TIGR02938 8 QTVDQAPLAISITDL--KANILYANDAFTRITGYTKEEIIGKNESVLSNHTTPPEVYQALWGSLAEQKPWAGKLLNRRKD 85 (494)
T ss_pred HHHHhCCceEEEECC--CCcEEEEchhheeecCCCHHHHhCCCchhhcCCCCCHHHHHHHHHHHHhCCcccceeeccCCC
Confidence 344467778877775 568999999999999999999998764433333333333333333333332222223345678
Q ss_pred CCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 802 GRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 802 Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
|+.++++ ..+-.+.| ++|...|.-.++.+
T Consensus 86 g~~~~~~-~~~~~~~~-~~g~~~~~~~~~~D 114 (494)
T TIGR02938 86 GELYLAE-LTVAPVLN-EAGETTHFLGMHRD 114 (494)
T ss_pred ccchhhh-eeeEEEEC-CCCCEEEEEEehhh
Confidence 8888874 34446678 88888876666544
No 90
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=83.06 E-value=3.3 Score=44.28 Aligned_cols=58 Identities=29% Similarity=0.281 Sum_probs=40.5
Q ss_pred ccchhHHHHHHH-----HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003250 79 QNRRCREKQRKE-----ASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 79 QNRRaK~Krrqe-----~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
||-|-|.|.|.+ -..+..+|.+|..+|+.|++.++.|..+-++|+.+-..|++||...
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 565666554332 3456667888888888888888888777777777777777777643
No 91
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=82.09 E-value=66 Score=33.98 Aligned_cols=55 Identities=11% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhhhhhccccc
Q 003250 406 DGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLREHRSEWADF 476 (836)
Q Consensus 406 ~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd~RseWd~l 476 (836)
.+|..+. ..+.|.++.+|.. + |. .+.--++++-+ |.+|..|...|-|-|.+||..
T Consensus 27 k~w~~~~--~~~~~el~~~k~~-~-gs-----------~l~~~r~~~~i-~a~~~~vl~~lld~~~~Wd~~ 81 (204)
T cd08908 27 KGWVSYS--TSEQAELSYKKVS-E-GP-----------PLRLWRTTIEV-PAAPEEILKRLLKEQHLWDVD 81 (204)
T ss_pred cCCcccC--CCCcEEEEEeccC-C-CC-----------CcEEEEEEEEe-CCCHHHHHHHHHhhHHHHHHH
Confidence 3677763 3677899998863 2 21 35566777778 677777775555559999974
No 92
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=81.93 E-value=5.2 Score=39.26 Aligned_cols=85 Identities=21% Similarity=0.277 Sum_probs=49.7
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHHHHHHhhHHHHHhhHHHHH
Q 003250 31 VRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLME 110 (836)
Q Consensus 31 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~~l~~~n~~l~~~n~~l~e 110 (836)
.+||.+++..+- -.+|=+.| -|++...|--|=|.||+-.-+ -=...|+. +--.....|..
T Consensus 22 d~lsDd~LvsmS-------------VReLNr~L---rG~~reEVvrlKQrRRTLKNR-GYA~sCR~---KRv~Qk~eLE~ 81 (135)
T KOG4196|consen 22 DRLSDDELVSMS-------------VRELNRHL---RGLSREEVVRLKQRRRTLKNR-GYAQSCRV---KRVQQKHELEK 81 (135)
T ss_pred CCcCHHHHHHhh-------------HHHHHHHh---cCCCHHHHHHHHHHHHHHhhh-hHHHHHHH---HHHHHHHHHHH
Confidence 689999888772 33444444 288888888888888874221 11111111 11112234445
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 111 ENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 111 e~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
++..|..++++|+.||++++.|++.
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777777777777777764
No 93
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=81.39 E-value=18 Score=39.04 Aligned_cols=55 Identities=24% Similarity=0.416 Sum_probs=39.6
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhccccc
Q 003250 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (836)
Q Consensus 403 s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (836)
...++|..-.. .++|+|.++...+ +++-++=+-+ ++|++.||++|.| .|.+||..
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s~----------------~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEEDK----------------FLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCCC----------------ccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhh
Confidence 45678976542 4789999854310 1233555677 8999999999998 99999974
No 94
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=81.25 E-value=76 Score=33.35 Aligned_cols=71 Identities=7% Similarity=0.161 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHH-H
Q 003250 387 TFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVR-F 465 (836)
Q Consensus 387 kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~-F 465 (836)
+.++-=...|..-+.. .++|..-. +..++|+|.+++..+. | .+-+.-+-+ ++||+.||+ .
T Consensus 8 ~~~~~~~~~~~~~l~~--~~~W~l~~-~~~~gi~V~s~~~~~~-------------~--~~fk~~~~v-~~~~~~l~~~l 68 (209)
T cd08906 8 RQGKEALAVVEQILAQ--EENWKFEK-NNDNGDTVYTLEVPFH-------------G--KTFILKAFM-QCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHhhc--ccCCEEEE-ecCCCCEEEEeccCCC-------------C--cEEEEEEEE-cCCHHHHHHHH
Confidence 3344444455544433 45898542 3357889988665311 2 333666777 799999985 5
Q ss_pred Hhh--hhhccccc
Q 003250 466 LRE--HRSEWADF 476 (836)
Q Consensus 466 LRd--~RseWd~l 476 (836)
|.| .|.+||..
T Consensus 69 l~D~~~~~~W~~~ 81 (209)
T cd08906 69 ILQPEKMVLWNKT 81 (209)
T ss_pred HhChhhccccCcc
Confidence 677 99999974
No 95
>smart00340 HALZ homeobox associated leucin zipper.
Probab=80.60 E-value=3 Score=33.34 Aligned_cols=27 Identities=41% Similarity=0.416 Sum_probs=23.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003250 99 RKLTAMNKLLMEENDRLQKQVSQLVCE 125 (836)
Q Consensus 99 ~~l~~~n~~l~ee~~~l~~~~~~L~~E 125 (836)
+-|+..++.|.++|++|++++++||.-
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 448899999999999999999998854
No 96
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=80.18 E-value=7.7 Score=44.35 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=65.8
Q ss_pred HHhhcCCCceeccCCCCCceeecccHHHHHhhcCC-HHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcC
Q 003250 722 KNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETT-LVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMST 800 (836)
Q Consensus 722 ~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~-w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss 800 (836)
..|=+.+++|+-++.+ =.+.|+|.|+.+||+++ =+++.+.+...-.. ....+...++..+.+.|....|...-..+
T Consensus 256 ~l~e~~~d~I~v~D~~--G~I~~~N~a~~~l~G~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 332 (442)
T TIGR02040 256 RLYHEAPDAIVFSDAD--GTIRGANEAFLELTDSSSLEAVRGRTLDRWLG-RGGVDLRVLLSNVRRTGQVRLYATTLTGE 332 (442)
T ss_pred HHHHhCCceEEEEcCC--CcEEehhHHHHHHhCCCChHHHcCCCHHHHhC-CCcccHHHHHHHHhhcCceEEEEEEEEcC
Confidence 3344678888887764 47899999999999997 57788887542221 22334566777888889887777777899
Q ss_pred CCCeeEEcCeEEeEeec
Q 003250 801 MGRHVSYEQAVAWKVLA 817 (836)
Q Consensus 801 ~Grrf~ie~A~vW~v~d 817 (836)
.|+.++++ +-...+.
T Consensus 333 ~G~~~~ve--~s~~~i~ 347 (442)
T TIGR02040 333 FGAQTEVE--ISAAWVD 347 (442)
T ss_pred CCCEEEEE--EEEEEec
Confidence 99999996 3444554
No 97
>PRK13558 bacterio-opsin activator; Provisional
Probab=79.75 E-value=10 Score=45.81 Aligned_cols=106 Identities=10% Similarity=-0.063 Sum_probs=73.8
Q ss_pred cCCCceeccCC-CCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCe
Q 003250 726 QHSDAILCCSL-KSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRH 804 (836)
Q Consensus 726 ~~~~avl~h~~-~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grr 804 (836)
+.++.|..++. ..+..+.|.|.+..+||.++-+++.+.+......+..+.++...+.+..+.|-.....--...+.|..
T Consensus 156 ~~~~gi~~~d~~~~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 235 (665)
T PRK13558 156 EAPVGITIADATLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTNEERVAELREAIDEERPTSVELRNYRKDGST 235 (665)
T ss_pred cCCccEEEEcCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcCCCccHHHHHHHHHHHhcCCCeEEEEEEECCCCCE
Confidence 56777766654 35778999999999999999999999887766666666666666666666554333222335677887
Q ss_pred eEEcCeEEeEeecCCCCceEEEEEEecCc
Q 003250 805 VSYEQAVAWKVLAPEDNTVHCLAFSFINW 833 (836)
Q Consensus 805 f~ie~A~vW~v~d~~~g~~~gqAa~f~~W 833 (836)
++++- .+=.+.| ++|...|...++.+-
T Consensus 236 ~~~~~-~~~pi~d-~~G~~~~~vgi~~DI 262 (665)
T PRK13558 236 FWNQV-DIAPIRD-EDGTVTHYVGFQTDV 262 (665)
T ss_pred EEEEE-EEEEEEC-CCCCEEEEEEEEEeC
Confidence 77642 3335567 889888877766553
No 98
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=79.06 E-value=87 Score=32.70 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=40.1
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhccccc
Q 003250 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (836)
Q Consensus 404 ~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (836)
-..+|..... .++|+|-.|...+. ++.--++...+.++|++.+|++|.| .|.+||..
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~~s--------------~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~ 77 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHPGT--------------GLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT 77 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccCCC--------------CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh
Confidence 4456987653 45799888776421 2233455454558999999999998 89999975
No 99
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=78.82 E-value=13 Score=42.66 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=58.0
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCee
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHV 805 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf 805 (836)
+.+++|+..+. .+-.+.|.|.++.+||.++-+++.+.+......+..+......+.+...+|....+ =+++...|.++
T Consensus 141 ~~~~~i~~~d~-~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~~~~~~~~~~ 218 (442)
T TIGR02040 141 VSSDAVLLVDM-STGRIVEANSAAAALLGGVGQSLVGRAFPQEFEGRRREELMLTLRNVRATGSAAPV-RILLRRSQKRL 218 (442)
T ss_pred hCCceEEEEEC-CCCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCCcce-EEEEcCCCeEE
Confidence 44677776654 24589999999999999999999999877777777787778888888888874432 34454555544
No 100
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=77.81 E-value=2.9 Score=34.48 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=28.0
Q ss_pred HHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcc
Q 003250 721 LKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITL 765 (836)
Q Consensus 721 ~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lps 765 (836)
++.++ +.|++|+-.+ + + .+.|+|+++.+||+++ ..+.+.
T Consensus 3 ~~~l~~~~~~~i~i~d-~-~-~i~~~N~~~~~l~g~~---~~~~~~ 42 (64)
T PF13188_consen 3 YRSLFDNSPDGILIID-G-G-RIIYVNPAFEELFGYS---LEGEDI 42 (64)
T ss_dssp HHHHHCCSSSEEEEEE-T-S-BEEEE-HHHHHHHCS----HTCCCH
T ss_pred HHHHHHcCccceEEEE-C-C-ChHHhhHHHHHHhCCC---CCCCCH
Confidence 44455 7788888888 3 3 9999999999999988 444444
No 101
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=76.49 E-value=3.6 Score=44.29 Aligned_cols=54 Identities=15% Similarity=0.351 Sum_probs=39.5
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhccccc
Q 003250 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (836)
Q Consensus 404 ~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (836)
..++|..- ...++|+|.++.+. .+++-+.=+-+ ++|++.||++|.| .|.+||..
T Consensus 53 ~~~~W~l~--~~k~gIkVytr~~s----------------~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~~ 108 (235)
T cd08873 53 AKSDWTVA--SSTTSVTLYTLEQD----------------GVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDPH 108 (235)
T ss_pred ccCCCEEE--EcCCCEEEEEecCC----------------CceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhhc
Confidence 46789754 34578999998731 23433444446 8999999999998 99999974
No 102
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=76.37 E-value=4.6 Score=40.91 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=43.8
Q ss_pred hccC-CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhcccc
Q 003250 399 AVNG-FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWAD 475 (836)
Q Consensus 399 ~v~~-s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~ 475 (836)
+.++ |++-+|.... ..++|+|..++.. + +.+..-+++..+ +.||+.+++++.| +|.+||.
T Consensus 9 ~~~~~~~~~~W~~~~--~~~~v~v~~~~~~--~------------~~~~~~k~~~~i-~~s~e~v~~vi~d~e~~~~w~~ 71 (195)
T cd08876 9 AGAALAPDGDWQLVK--DKDGIKVYTRDVE--G------------SPLKEFKAVAEV-DASIEAFLALLRDTESYPQWMP 71 (195)
T ss_pred cccccCCCCCCEEEe--cCCCeEEEEEECC--C------------CCeEEEEEEEEE-eCCHHHHHHHHhhhHhHHHHHh
Confidence 3444 4444598775 3568999988753 1 123455666778 7999999999998 8999997
Q ss_pred c
Q 003250 476 F 476 (836)
Q Consensus 476 l 476 (836)
.
T Consensus 72 ~ 72 (195)
T cd08876 72 N 72 (195)
T ss_pred h
Confidence 4
No 103
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=76.07 E-value=8.3 Score=41.98 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=64.3
Q ss_pred hHHHHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEE
Q 003250 719 SVLKNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICM 798 (836)
Q Consensus 719 ~~~~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRi 798 (836)
..-+.|-+.|++|+-.+. +-.++|.|++|.++|.++.+++.+.|..-...... .+. ..+.++.+.|-...+..+++
T Consensus 8 ~~~~il~~~~~gi~~~d~--~~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 83 (348)
T PRK11073 8 DAGQILNSLINSILLLDD--DLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFS-LNI-ELMRESLQAGQGFTDNEVTL 83 (348)
T ss_pred hHHHHHhcCcCeEEEECC--CCeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCcch-hhH-HHHHHHHHcCCcccccceEE
Confidence 344566688888888875 67999999999999999999999988766654432 222 23345555554444567888
Q ss_pred cCCCCeeEEcCeEEeEeec
Q 003250 799 STMGRHVSYEQAVAWKVLA 817 (836)
Q Consensus 799 ss~Grrf~ie~A~vW~v~d 817 (836)
...|+.++++ +.+..+.
T Consensus 84 ~~~g~~~~~~--~~~~~~~ 100 (348)
T PRK11073 84 VIDGRSHILS--LTAQRLP 100 (348)
T ss_pred EECCceEEEE--EEEEEcc
Confidence 8889888763 3444443
No 104
>smart00338 BRLZ basic region leucin zipper.
Probab=75.22 E-value=11 Score=32.19 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=23.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
|..+...|..++..|..++.+|..|+..|++++.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566666777777777778888888877753
No 105
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=74.78 E-value=17 Score=44.42 Aligned_cols=104 Identities=10% Similarity=0.043 Sum_probs=68.8
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCccccc-CCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCe
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKI-FDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRH 804 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~t-ae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grr 804 (836)
+.+++|+..+ .+-.++|.|+++.++|.++.+++.+.+...- ..+....+....+.+....+-.....-......|+.
T Consensus 144 ~~~~~i~~~d--~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 221 (799)
T PRK11359 144 HLDRPVIVLD--PERRIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEK 221 (799)
T ss_pred cCCCcEEEEc--CCCcEEEEChhhHhhhCCCHHHHCCCChHHhcCCCCCcHHHHHHHHHhhccCCCCcceeEEeCCCCCE
Confidence 3455555544 4678999999999999999999998865432 223333444444555555444333333456788998
Q ss_pred eEEcCeEEeEeecCCCCceEEEEEEecCc
Q 003250 805 VSYEQAVAWKVLAPEDNTVHCLAFSFINW 833 (836)
Q Consensus 805 f~ie~A~vW~v~d~~~g~~~gqAa~f~~W 833 (836)
++++ ..+-.+.| ++|...|...++.+-
T Consensus 222 ~~~~-~~~~~v~d-~~g~~~~~~~~~~DI 248 (799)
T PRK11359 222 IWIK-ASISPVYD-VLAHLQNLVMTFSDI 248 (799)
T ss_pred EEEE-eeeeeeec-CCCceeEEEEEeehh
Confidence 8874 45556778 888888877777653
No 106
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=72.34 E-value=7.3 Score=40.59 Aligned_cols=58 Identities=16% Similarity=0.308 Sum_probs=39.4
Q ss_pred CCCCcccccCCCc--cEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhccccc
Q 003250 405 DDGWSLMTCDGAE--DVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (836)
Q Consensus 405 ~~~W~~l~~~g~~--dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (836)
+++|..+....++ +|+|-.|+.. |. ++.--++...+.++||+.|+++|.| .|.+||..
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~---~s-----------~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 82 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPK---GT-----------GLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET 82 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccC---CC-----------CceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh
Confidence 3789987643332 3666555532 11 2334555667767899999999998 89999975
No 107
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=71.10 E-value=6.7 Score=41.02 Aligned_cols=56 Identities=13% Similarity=0.330 Sum_probs=41.1
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh----hhhccccc
Q 003250 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE----HRSEWADF 476 (836)
Q Consensus 404 ~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd----~RseWd~l 476 (836)
..++|.... + .++|+|.++++...+|. + -++-.-+ |++|+.||++|.| .|.+||..
T Consensus 20 ~~~~W~~~~-~-~~~i~v~~~~~~~~~~~------------~--~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~ 79 (208)
T cd08903 20 DESGWKTCR-R-TNEVAVSWRPSAEFAGN------------L--YKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQN 79 (208)
T ss_pred cccCCEEEE-c-CCCEEEEeeecCCCCCc------------E--EEEEEEe-cCCHHHHHHHHHhccchhhhhhhhc
Confidence 567898765 3 36999999987533322 2 4444556 8999999999985 68999974
No 108
>PRK13560 hypothetical protein; Provisional
Probab=70.84 E-value=24 Score=42.78 Aligned_cols=104 Identities=8% Similarity=-0.056 Sum_probs=65.9
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCee
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHV 805 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf 805 (836)
+.|++|+..+. +=.+.|.|+++.++|.++-+++.+.+...-..+...+............|-...+.-....+.|+.+
T Consensus 212 ~~~~~i~~~d~--~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 289 (807)
T PRK13560 212 NIADPAFWKDE--DAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQPADDYQEADAAKFDADGSQIIEAEFQNKDGRTR 289 (807)
T ss_pred hCCCeEEEEcC--CCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcchhHHHHHHHHHHhccCCceEEEEEEEcCCCCEE
Confidence 56777766554 5689999999999999999999998876655444333333444444443322233334557788887
Q ss_pred EEcCeE-EeEeecCCCCceEEEEEEecC
Q 003250 806 SYEQAV-AWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 806 ~ie~A~-vW~v~d~~~g~~~gqAa~f~~ 832 (836)
+++-.+ .-.+.| ++|...|...++.+
T Consensus 290 ~~~~~~~~~~~~~-~~g~~~g~~~~~~D 316 (807)
T PRK13560 290 PVDVIFNHAEFDD-KENHCAGLVGAITD 316 (807)
T ss_pred EEEEEecceEEEc-CCCCEEEEEEEEEe
Confidence 553211 122346 77888777666554
No 109
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=69.88 E-value=51 Score=33.43 Aligned_cols=148 Identities=20% Similarity=0.268 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHh
Q 003250 388 FSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLR 467 (836)
Q Consensus 388 LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLR 467 (836)
|+.+....|.. ......++|.........++. +++..... ...+...++..-+ +.++..+|..|.
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~-----------~~~~~~~k~~~~v-~~~~~~~~~~~~ 66 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLYKDKKNGDVY--YKKVSPSD-----------SCPIKMFKAEGVV-PASPEQVVEDLL 66 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEEEEETTTCEE--EEEEECSS-----------STSCEEEEEEEEE-SSCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEeEccCCCeEE--EEEeCccc-----------cccceEEEEEEEE-cCChHHHHHHHH
Confidence 45555555553 335677899988733344444 33432111 0134566777777 788887777777
Q ss_pred hhhhcccccccchhhhhhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceEEEeee
Q 003250 468 EHRSEWADFNVDAYSAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIHLLQIC 547 (836)
Q Consensus 468 d~RseWd~l~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~ 547 (836)
+.+.+||..-.+ .+.+-.+ ++++.|.....+..-. ..+.+||..+++-.
T Consensus 67 ~~~~~Wd~~~~~------------------------~~~le~~----~~~~~i~~~~~~~~~~---~p~~~RDfv~~~~~ 115 (206)
T PF01852_consen 67 DDREQWDKMCVE------------------------AEVLEQI----DEDTDIVYFVMKSPWP---GPVSPRDFVFLRSW 115 (206)
T ss_dssp CGGGHHSTTEEE------------------------EEEEEEE----ETTEEEEEEEEE-CTT---TTSSEEEEEEEEEE
T ss_pred hhHhhcccchhh------------------------heeeeec----CCCCeEEEEEecccCC---CCCCCcEEEEEEEE
Confidence 644499985111 2333333 2334555544443221 13567889988875
Q ss_pred cccCCCCCCceeEEEEeeccCCC-----CCCCc--ccCCccEEec
Q 003250 548 SGVDENAVGACSELVFAPIDEMF-----PDDGP--LLPSGFRIIP 585 (836)
Q Consensus 548 s~~De~~~Gs~s~vVyAPvD~~d-----s~~v~--LLPSGF~I~P 585 (836)
. .+ ..|+ -.+++..||-+. +..|- +++|||.|-|
T Consensus 116 ~-~~--~~~~-~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~ 156 (206)
T PF01852_consen 116 R-KD--EDGT-YVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRP 156 (206)
T ss_dssp E-EC--TTSE-EEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEE
T ss_pred E-Ee--ccce-EEEEEeeeccccccccccCcceeeeeeEeEEEEE
Confidence 3 33 3453 355666777652 23343 8899999999
No 110
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.75 E-value=14 Score=29.91 Aligned_cols=39 Identities=28% Similarity=0.267 Sum_probs=24.3
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 96 TVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 96 ~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
...+.|++.++.|+.++++|.++.+.|+.|-..|+..++
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556666677776666666666666666666665543
No 111
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=68.38 E-value=3.1 Score=50.52 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=43.7
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 38 VEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 38 l~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
...|...|..|..|+..+-..++... |+..+.||.||+++++....-+
T Consensus 568 ~sllkayyaln~~ps~eelskia~qv----glp~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQV----GLPFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHh----cccHHHHHHHHHhhhhhhhhhc
Confidence 77889999999999999999999999 9999999999999998866533
No 112
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=67.39 E-value=8 Score=41.73 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=43.5
Q ss_pred CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhccccc
Q 003250 403 FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (836)
Q Consensus 403 s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (836)
...++|..- ...++|+|.++. + . .+++-+.-+-+ ++|++.+|++|.| .|.+||..
T Consensus 53 a~~~~W~l~--~dkdgIkVytr~----~-s-----------~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVT--STVEKIKIYTLE----E-H-----------DVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEE--EccCCEEEEEec----C-C-----------CcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHh
Confidence 457899754 345789999974 1 1 25788888888 8999999999999 89999974
No 113
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=66.35 E-value=10 Score=39.64 Aligned_cols=66 Identities=17% Similarity=0.369 Sum_probs=45.7
Q ss_pred HHhhhcc--CCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hh
Q 003250 395 GFNDAVN--GFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HR 470 (836)
Q Consensus 395 ~F~~~v~--~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~R 470 (836)
-||.=|+ .-.+.+|..... .++|+|-.|... + .++.--++...++.++|+.++++|.| .|
T Consensus 12 ~~~~~~~~~~~~~~~W~l~~~--~~~i~Vy~r~~~--~------------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r 75 (207)
T cd08910 12 EACAELQQPALDGAAWELLVE--SSGISIYRLLDE--Q------------SGLYEYKVFGVLEDCSPSLLADVYMDLEYR 75 (207)
T ss_pred HHHHHhcCCCCCCCCeEEEEe--cCCeEEEEeccC--C------------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHH
Confidence 3444444 234467987653 458999887653 1 13445677777855999999999998 89
Q ss_pred hccccc
Q 003250 471 SEWADF 476 (836)
Q Consensus 471 seWd~l 476 (836)
.+||..
T Consensus 76 ~~Wd~~ 81 (207)
T cd08910 76 KQWDQY 81 (207)
T ss_pred HHHHHH
Confidence 999975
No 114
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=65.44 E-value=10 Score=41.86 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=23.2
Q ss_pred HHHHhhHHHHHHHHHHHH----HHHHHHHHhHHHHHhhcc
Q 003250 100 KLTAMNKLLMEENDRLQK----QVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 100 ~l~~~n~~l~ee~~~l~~----~~~~L~~ENa~L~~el~r 135 (836)
.+.+||+.|++++.++.. ..+.++.||++||+.|.-
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 355566666665544422 233489999999998874
No 115
>PRK09776 putative diguanylate cyclase; Provisional
Probab=65.18 E-value=25 Score=44.79 Aligned_cols=107 Identities=14% Similarity=0.045 Sum_probs=71.6
Q ss_pred hHHHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCC-ee
Q 003250 719 SVLKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPA-GI 796 (836)
Q Consensus 719 ~~~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~-Gv 796 (836)
..++.++ +.|++|+.++. |-.+.|.|+++.+|+.++-+|+.+.+...-..+..++.....+.++...+...... -.
T Consensus 283 ~r~~~l~e~~~~~i~~~d~--dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~e~~ 360 (1092)
T PRK09776 283 TRFRNAMEYSAIGMALVGT--EGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLSGEINSYSMEKR 360 (1092)
T ss_pred HHHHHHHHhCCceEEEEcC--CCcEEehhHHHHHHhCCCHHHHccCCceeccCcchhHhHHHHHHHHHcCCccceeeeeE
Confidence 3444444 66777776664 67999999999999999999999998877666666666666666666544322111 22
Q ss_pred EEcCCCCeeEEcCeEEeEeecCCCCceEEEEEE
Q 003250 797 CMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFS 829 (836)
Q Consensus 797 Riss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~ 829 (836)
...+.|+.++++-... -+.| ++|...|...+
T Consensus 361 ~~~~dG~~~~~~~~~~-~~~~-~~g~~~~~i~~ 391 (1092)
T PRK09776 361 YYRRDGEVVWALLAVS-LVRD-TDGTPLYFIAQ 391 (1092)
T ss_pred EEcCCCCEEEEEEEEE-EEEC-CCCCEeeehhh
Confidence 3457788877764333 2446 77877765443
No 116
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=65.13 E-value=5.1 Score=33.20 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=35.5
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccch
Q 003250 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 82 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRR 82 (836)
+|+|..+|-++...+-..++..+ ...++|+++ |+...+|.-|..||.
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~f----gv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREF----GVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHH----T--CCHHHHHHHCHH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHh----CCCHHHHHHHHHhHH
Confidence 47788999999888888888776 578899999 999999999998853
No 117
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=63.96 E-value=40 Score=28.94 Aligned_cols=82 Identities=9% Similarity=0.027 Sum_probs=55.6
Q ss_pred ecccHHHHHhhcCCHHHhhcCc----ccccCCcccHHHHHHHHHH-HHHhCCccCCCeeEEcCCCCeeEEcCeEEeEeec
Q 003250 743 IFANQAGLDMLETTLVALQDIT----LDKIFDESGRKALCADFAK-LMQQGFTYLPAGICMSTMGRHVSYEQAVAWKVLA 817 (836)
Q Consensus 743 ~yaN~aal~l~E~~w~~l~~lp----sr~tae~~~r~~r~~~l~~-v~~qGy~~~y~GvRiss~Grrf~ie~A~vW~v~d 817 (836)
+|.|....+||+++-+++ +.+ +..-.-|.+|+...+.+.+ ..+.|-.....==.+.+.|+..|++- ..=-+.|
T Consensus 2 i~~s~~~~~i~G~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~-~~~~~~d 79 (91)
T PF08447_consen 2 IYWSDNFYEIFGYSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEV-RGRPIFD 79 (91)
T ss_dssp EEE-THHHHHHTS-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEE-EEEEEET
T ss_pred EEEeHHHHHHhCCCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEE-EEEEEEC
Confidence 689999999999999999 777 6666677788888888888 56666333322233457888888853 4444558
Q ss_pred CCCCceEEEE
Q 003250 818 PEDNTVHCLA 827 (836)
Q Consensus 818 ~~~g~~~gqA 827 (836)
++|+..+..
T Consensus 80 -~~g~~~~~~ 88 (91)
T PF08447_consen 80 -ENGKPIRII 88 (91)
T ss_dssp -TTS-EEEEE
T ss_pred -CCCCEEEEE
Confidence 888877654
No 118
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=62.58 E-value=2e+02 Score=30.05 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHH
Q 003250 386 RTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRF 465 (836)
Q Consensus 386 lkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~F 465 (836)
.++++.....|-.-. ...++|.... .+.++++|.++...+. | ---++-.-+ |+||+.|+++
T Consensus 7 ~~~~~~~~~~~~~~~--~~~~~W~~~~-~~~~gi~v~s~~~~~~-------------~--k~~k~e~~i-~~~~~~l~~~ 67 (209)
T cd08905 7 IKQGEEALQKSLSIL--QDQEGWKTEI-VAENGDKVLSKVVPDI-------------G--KVFRLEVVV-DQPLDNLYSE 67 (209)
T ss_pred HHHHHHHHHHHHHHh--ccccCCEEEE-ecCCCCEEEEEEcCCC-------------C--cEEEEEEEe-cCCHHHHHHH
Confidence 345555555555444 2456898663 3356678887554311 1 233445567 8999999977
Q ss_pred Hhh---hhhccccc
Q 003250 466 LRE---HRSEWADF 476 (836)
Q Consensus 466 LRd---~RseWd~l 476 (836)
|.+ .+.+|+..
T Consensus 68 l~~d~e~~~~W~~~ 81 (209)
T cd08905 68 LVDRMEQMGEWNPN 81 (209)
T ss_pred HHhchhhhceeccc
Confidence 774 89999974
No 119
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.92 E-value=15 Score=29.87 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=24.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
+..+++.|+...+.|..+...|..||+.|+.|+.++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777777777777776653
No 120
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=60.47 E-value=15 Score=39.79 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=25.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHH---HHHHHhHHHHHhhcc
Q 003250 98 NRKLTAMNKLLMEENDRLQKQVS---QLVCENGYMKQQLRT 135 (836)
Q Consensus 98 n~~l~~~n~~l~ee~~~l~~~~~---~L~~ENa~L~~el~r 135 (836)
..++.++|+.|++++.+++.+.. +++.||++||+.|.-
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455666666666666555444 688999999998764
No 121
>PRK10060 RNase II stability modulator; Provisional
Probab=59.70 E-value=38 Score=41.37 Aligned_cols=82 Identities=7% Similarity=0.013 Sum_probs=58.0
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcc-cccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCe
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITL-DKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRH 804 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lps-r~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grr 804 (836)
+.+++|+..+.+ =.+.|+|+++.+|+.++-+++.+.+. .+...+...+...+.+..+.+.|-.......-..+.|++
T Consensus 119 ~~~~gI~i~D~~--g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~ 196 (663)
T PRK10060 119 EANSVIVILDSR--GNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERWIKTRKGQR 196 (663)
T ss_pred hCCceEEEEeCC--CCEEEEcHHHHHHHCcCHHHHcCCCHHHHhCChhhHHHHHHHHHHHHhcCCceEEEEEEEeCCCCE
Confidence 566778777664 46999999999999999999999886 444455445555666777777765333233345778888
Q ss_pred eEEcC
Q 003250 805 VSYEQ 809 (836)
Q Consensus 805 f~ie~ 809 (836)
+++..
T Consensus 197 ~~~~~ 201 (663)
T PRK10060 197 LFLFR 201 (663)
T ss_pred EEEEe
Confidence 77543
No 122
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=58.68 E-value=20 Score=39.64 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003250 85 EKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLV 123 (836)
Q Consensus 85 ~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~ 123 (836)
.|||.+...+..+-..|.+.|+.||+...++++|++-|+
T Consensus 244 qKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 244 QKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLK 282 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555555555555555554333
No 123
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.42 E-value=26 Score=31.22 Aligned_cols=35 Identities=31% Similarity=0.344 Sum_probs=21.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 100 KLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 100 ~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
.|+.+++.+++++..+..+...|+.||.+|+++..
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666666666666666666666543
No 124
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=53.74 E-value=26 Score=33.23 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=27.4
Q ss_pred ceeeccccc--hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHH
Q 003250 73 QIKVWFQNR--RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQK 117 (836)
Q Consensus 73 QVKvWFQNR--RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~ 117 (836)
+...||++. +.-.+.+++...++.++.+++++|..|+++.+.++.
T Consensus 16 ~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 16 QYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456788665 333444555556666666666666666666666544
No 125
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=53.40 E-value=26 Score=38.47 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhc
Q 003250 112 NDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 112 ~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
...|+++-+.|+.+..+|++|+.
T Consensus 224 ~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 224 VAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 126
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=51.63 E-value=41 Score=27.77 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhHHHHHhh
Q 003250 113 DRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 113 ~~l~~~~~~L~~ENa~L~~el 133 (836)
..++.++..|..+|..|++++
T Consensus 28 ~~le~~~~~L~~en~~L~~~i 48 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEI 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555554444
No 127
>smart00338 BRLZ basic region leucin zipper.
Probab=51.38 E-value=82 Score=26.81 Aligned_cols=45 Identities=31% Similarity=0.460 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 003250 82 RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCEN 126 (836)
Q Consensus 82 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~EN 126 (836)
+++.|++.....++..-..|..+|..|..+...+..+...|+.++
T Consensus 19 ~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 19 RSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666667777777777777777777777776654
No 128
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=51.00 E-value=92 Score=35.94 Aligned_cols=103 Identities=10% Similarity=0.079 Sum_probs=65.8
Q ss_pred hhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCC
Q 003250 724 LWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGR 803 (836)
Q Consensus 724 l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Gr 803 (836)
+=+.+++|+..+. +-.+.|.|+++.+||.++..++.+.+....+.+.. .....+.++.+.|-.....-+++...+.
T Consensus 268 ~~~~~~~i~~~d~--~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (607)
T PRK11360 268 LESIADGVIAIDR--QGKITTMNPAAEVITGLQRHELVGKPYSELFPPNT--PFASPLLDTLEHGTEHVDLEISFPGRDR 343 (607)
T ss_pred HHhccCeEEEEcC--CCCEEEECHHHHHHhCCChHHhcCCcHHHHcCCch--hHHHHHHHHHhcCCCccceEEEEEcCCC
Confidence 3467788888775 55789999999999999999999988777665432 2233444555554433223344443333
Q ss_pred eeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 804 HVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 804 rf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
...+. ..+=.+.| ++|...|...+|.+
T Consensus 344 ~~~~~-~~~~~i~~-~~g~~~~~i~~~~D 370 (607)
T PRK11360 344 TIELS-VSTSLLHN-THGEMIGALVIFSD 370 (607)
T ss_pred cEEEE-EEEeeEEc-CCCCEEEEEEEEee
Confidence 33232 23334567 88888888777765
No 129
>PRK09776 putative diguanylate cyclase; Provisional
Probab=50.41 E-value=80 Score=40.28 Aligned_cols=102 Identities=11% Similarity=0.082 Sum_probs=65.9
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCc---ccHHHHHHHHHHHHHhCC-ccCCCe-eEEcC
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDE---SGRKALCADFAKLMQQGF-TYLPAG-ICMST 800 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~---~~r~~r~~~l~~v~~qGy-~~~y~G-vRiss 800 (836)
+.+++|+..+. +=.++|.|+++.++++++-+|+.+.|....... ........ +.+....+- .+.... ....+
T Consensus 544 ~~~~~i~~~D~--~g~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 620 (1092)
T PRK09776 544 SIGEAVVCTDM--AMKVTFMNPVAEKMTGWTQEEALGVPLLTVLHITFGDNGPLMEN-IYSCLTSRSAAYLEQDVVLHCR 620 (1092)
T ss_pred ccccEEEEECC--CCeEEEEcHHHHHHhCCCHHHHcCCCHHHHcccccCCcchhhHH-HHHHHhcCCCccccceEEEEeC
Confidence 45778887766 457999999999999999999998876543322 11112222 333333221 111122 34578
Q ss_pred CCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 801 MGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 801 ~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
.|++++++- .+-.+.| ++|...|...++.+
T Consensus 621 ~G~~~~~~~-~~~pi~~-~~g~~~g~v~~~~D 650 (1092)
T PRK09776 621 SGGSYDVHY-SITPLST-LDGENIGSVLVIQD 650 (1092)
T ss_pred CCcEEEEEE-Eeeeeec-CCCCEEEEEEEEEe
Confidence 899998864 5567788 89998887777655
No 130
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=50.09 E-value=42 Score=32.03 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=29.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003250 99 RKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 99 ~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
..+.++-..|+.....+..+-..|++||+.||+.|...
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777778888999999999888764
No 131
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=49.72 E-value=37 Score=40.47 Aligned_cols=31 Identities=29% Similarity=0.176 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003250 106 KLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 106 ~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
..|+..+..+.+|-++|+.||+.||++|.-+
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444455667777788899999999888754
No 132
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=48.53 E-value=79 Score=26.86 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=22.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 98 NRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 98 n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
-..|......|..++..|..++..|..++..|+.++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555666666666666666666666666666654
No 133
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=47.47 E-value=46 Score=36.54 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=20.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
....-..|..||+.|..++.+|+.|+..|++-+..
T Consensus 220 ~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 220 MAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455556666666666666666666665543
No 134
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=46.52 E-value=53 Score=31.64 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=29.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003250 99 RKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 99 ~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
..+.++-..|+.....+..+-..|++||..||+.|...
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555667777777777788888999999999988874
No 135
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=46.03 E-value=57 Score=35.00 Aligned_cols=64 Identities=19% Similarity=0.364 Sum_probs=45.5
Q ss_pred hhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEE-EEeeecccccCChhHHHHHHhh--hhhccc
Q 003250 398 DAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGIL-CAKASMLLQNVPPALLVRFLRE--HRSEWA 474 (836)
Q Consensus 398 ~~v~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL-~A~tS~wL~pvpp~~lf~FLRd--~RseWd 474 (836)
-|.-+-..++|.... ..++|+|-.|...+. |.++ .-++..-++.|+++.++++|.| .|.+||
T Consensus 18 ~~~~~~~~~~W~l~~--~~~gikVy~r~~~~s-------------g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd 82 (235)
T cd08872 18 YALEDVGADGWQLFA--EEGEMKVYRREVEED-------------GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWE 82 (235)
T ss_pred HHHccCCCCCCEEEE--eCCceEEEEEECCCC-------------CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHH
Confidence 344455666898765 256799988775321 1222 3677777866999999999998 999999
Q ss_pred cc
Q 003250 475 DF 476 (836)
Q Consensus 475 ~l 476 (836)
..
T Consensus 83 ~~ 84 (235)
T cd08872 83 TT 84 (235)
T ss_pred hh
Confidence 74
No 136
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=45.34 E-value=29 Score=41.30 Aligned_cols=40 Identities=33% Similarity=0.397 Sum_probs=28.8
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003250 91 ASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMK 130 (836)
Q Consensus 91 ~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~ 130 (836)
...++..-.++.+||+.|+.||.-|..++..|..||..+|
T Consensus 304 ~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 304 MLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 3445555566778888888888888888888888886554
No 137
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=43.86 E-value=34 Score=29.38 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=28.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 102 TAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 102 ~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
+.+-+.+++.+.+|+.+..+|..||..||+...
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445678899999999999999999999998754
No 138
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=43.01 E-value=92 Score=29.05 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=58.1
Q ss_pred eeeEEEeChhHHHHHhcCccchhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEE
Q 003250 215 ACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCE 294 (836)
Q Consensus 215 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 294 (836)
.+-.+...+.++.++|.|.+.|.+-+|.++-+..+..|.-.. +....+ .|+ ..|--...+|...-++..+++.-
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~----~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEA----TVKLKV-GPV-KGTFKGKVELSDLDPPESYTITG 78 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEE----EEEEEE-ccE-EEEEEEEEEEEecCCCcEEEEEE
Confidence 344566778999999999999999998776555544221110 111111 222 12322234554433344444332
Q ss_pred eecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecc
Q 003250 295 RSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLE 343 (836)
Q Consensus 295 vSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d 343 (836)
..-.. . .+. ..=--+-+.+. +|+|+|+|.-+++..
T Consensus 79 ~~~~~---~-------~~~---~~~~~~~l~~~-~~gT~v~~~~~~~~~ 113 (144)
T cd05018 79 EGKGG---A-------GFV---KGTARVTLEPD-GGGTRLTYTADAQVG 113 (144)
T ss_pred EEcCC---C-------ceE---EEEEEEEEEec-CCcEEEEEEEEEEEc
Confidence 11110 0 010 11123456777 667999999999854
No 139
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.00 E-value=64 Score=28.76 Aligned_cols=42 Identities=29% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 93 RLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 93 ~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
.++-+-+.|+..|..+..+..+.+.....|+.||.+||+|-.
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666677888888887743
No 140
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=42.11 E-value=94 Score=38.08 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=66.2
Q ss_pred hHHHHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccC--C--C
Q 003250 719 SVLKNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYL--P--A 794 (836)
Q Consensus 719 ~~~~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~--y--~ 794 (836)
..+.++=+.+++|+..+. +-.+.|.|+++.+||.++-+|+.+-|...-..+..+......+.++...|-... + .
T Consensus 13 ~~~~~le~~~~~i~~~d~--~g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 90 (799)
T PRK11359 13 IFFPALEQNMMGAVLINE--NDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 90 (799)
T ss_pred hHHHHHHhhcCcEEEEcC--CCeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCccccccchHHHhhhhccCCcccccccee
Confidence 334666678888887765 568999999999999999999998877665555444433344444444332110 0 1
Q ss_pred eeEEcCCCCeeEEcCeEEeEeecCCCCceEEEE
Q 003250 795 GICMSTMGRHVSYEQAVAWKVLAPEDNTVHCLA 827 (836)
Q Consensus 795 GvRiss~Grrf~ie~A~vW~v~d~~~g~~~gqA 827 (836)
-....+.|++++++-.+ ..++ .+|...+.+
T Consensus 91 ~~~~~~dG~~~~v~~~~--~~~~-~~g~~~~~~ 120 (799)
T PRK11359 91 LQLEKKDGSKIWTRFAL--SKVS-AEGKVYYLA 120 (799)
T ss_pred eEEecCCcCEEEEEEEe--eeec-cCCceEEEE
Confidence 12246788888886433 4456 667655443
No 141
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=41.84 E-value=58 Score=38.32 Aligned_cols=91 Identities=24% Similarity=0.321 Sum_probs=53.5
Q ss_pred ccCCHHHHHHHHHh-Hhc-CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHH-HHHH-hhHHHHHhhH
Q 003250 31 VRYTAEQVEALERV-YSE-CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS-RLQT-VNRKLTAMNK 106 (836)
Q Consensus 31 ~r~T~~Ql~~LE~~-F~~-~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~-~l~~-~n~~l~~~n~ 106 (836)
-++|.+....|.+. |-. ..+|-.+.-+++.++. ||..|.|+-..++ +-+. --+.|.....
T Consensus 219 L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv----------------RRKIrNK~SAQESRrkKkeYid~LE~rv~ 282 (472)
T KOG0709|consen 219 LVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV----------------RRKIRNKRSAQESRRKKKEYIDGLESRVS 282 (472)
T ss_pred eeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH----------------HHHHHhhhhhHHHHHhHhhHHHHHhhhhh
Confidence 35677777777654 222 3456666555555554 2222222211111 1111 1233444555
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003250 107 LLMEENDRLQKQVSQLVCENGYMKQQLRTAP 137 (836)
Q Consensus 107 ~l~ee~~~l~~~~~~L~~ENa~L~~el~r~~ 137 (836)
...++|.+|++++++|..+|..|-++|.+..
T Consensus 283 ~~taeNqeL~kkV~~Le~~N~sLl~qL~klQ 313 (472)
T KOG0709|consen 283 AFTAENQELQKKVEELELSNRSLLAQLKKLQ 313 (472)
T ss_pred hcccCcHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 6667888999999999999999999998753
No 142
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=41.40 E-value=93 Score=33.54 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=35.2
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003250 90 EASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTAP 137 (836)
Q Consensus 90 e~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~~ 137 (836)
+...+..++..|..++..+..+.+..+..+..|+.||++|.+++.+..
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344455666667777777777777777778889999999998888753
No 143
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=41.17 E-value=80 Score=28.76 Aligned_cols=43 Identities=30% Similarity=0.263 Sum_probs=29.1
Q ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 92 SRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 92 ~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
..++-+-+.++..|..+.+++..+...-..|..||.+||+|..
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455555666666777776666665555668888888887754
No 144
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=40.40 E-value=79 Score=32.69 Aligned_cols=67 Identities=15% Similarity=0.397 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHH
Q 003250 387 TFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFL 466 (836)
Q Consensus 387 kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FL 466 (836)
++.|.|..-+.. .++|.... ..++|+|.+++..+. .+ -..++..-+ |.+|+.||++|
T Consensus 9 ~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~~------------~~--~~~k~~~~i-~~~~~~v~~~l 65 (206)
T cd08867 9 KLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTEF------------TG--HLYRAEGIV-DALPEKVIDVI 65 (206)
T ss_pred HHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCCC------------CC--EEEEEEEEE-cCCHHHHHHHH
Confidence 444555554442 27898764 346899998754321 11 123556667 89999999999
Q ss_pred hh----hhhccccc
Q 003250 467 RE----HRSEWADF 476 (836)
Q Consensus 467 Rd----~RseWd~l 476 (836)
.| .|.+||..
T Consensus 66 ~d~~~~~r~~Wd~~ 79 (206)
T cd08867 66 IPPCGGLRLKWDKS 79 (206)
T ss_pred HhcCcccccccccc
Confidence 97 79999963
No 145
>PRK10884 SH3 domain-containing protein; Provisional
Probab=40.00 E-value=77 Score=33.63 Aligned_cols=39 Identities=18% Similarity=0.054 Sum_probs=27.0
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 96 TVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 96 ~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
.....|..+|..+++++..++.+...|+.+|..++++..
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334447777777777777777777777777777776654
No 146
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=39.88 E-value=39 Score=38.04 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=22.9
Q ss_pred EEEEeeccCC----------CCCCCcccCCccEEecCCCC
Q 003250 560 ELVFAPIDEM----------FPDDGPLLPSGFRIIPLDSK 589 (836)
Q Consensus 560 ~vVyAPvD~~----------ds~~v~LLPSGF~I~P~~~~ 589 (836)
++|.-||-.+ .+=+|-.=|-|.-|-|.+++
T Consensus 337 ~~isg~v~~sit~l~~~~~l~~~~i~f~~~g~~v~~~g~~ 376 (420)
T PF07407_consen 337 YFISGPVGPSITCLMKTYALYSVEIVFGEKGLYVRPTGSK 376 (420)
T ss_pred ceEeccccchHHHHHHHhhhheeEEEEcCCceEEeccCCc
Confidence 5778888776 46677888999999996654
No 147
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=37.97 E-value=88 Score=33.05 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=38.8
Q ss_pred HHHHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCC
Q 003250 720 VLKNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFD 770 (836)
Q Consensus 720 ~~~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae 770 (836)
+...+=+.|+.|+-.+.+. ...|+|+++.++|.+++++..+.|......
T Consensus 8 l~~~~~~~~~~i~~~d~~g--~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~ 56 (333)
T TIGR02966 8 FRAAAQALPDAVVVLDEEG--QIEWCNPAAERLLGLRWPDDLGQRITNLIR 56 (333)
T ss_pred HHHHHHhCcCcEEEECCCC--cEEEEcHHHHHHhCCChHHHcCCcHHHHcc
Confidence 3345558888888888654 599999999999999999999877665543
No 148
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=37.70 E-value=2e+02 Score=23.66 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 003250 106 KLLMEENDRLQKQVSQLVCENGYMKQQ 132 (836)
Q Consensus 106 ~~l~ee~~~l~~~~~~L~~ENa~L~~e 132 (836)
..+..+...|..+..+|+.+++.|+.|
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444555555555555555543
No 149
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=37.34 E-value=1.3e+02 Score=29.84 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003250 83 CREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVC 124 (836)
Q Consensus 83 aK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ 124 (836)
||.|+-+....|+.++..|..+-+.|++|+.++..+.+.++.
T Consensus 68 CR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 68 CRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445565566666666666666666666666555555544443
No 150
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=36.46 E-value=1.1e+02 Score=21.16 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=34.9
Q ss_pred CCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHH
Q 003250 727 HSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADF 781 (836)
Q Consensus 727 ~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l 781 (836)
.+++++.++. +-.+.|.|..+.+++.++..++.+.+......+..++.....+
T Consensus 10 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (67)
T smart00091 10 LPDGIFVLDL--DGRILYANPAAEELLGYSPEELIGKSLLELIHPEDREEVQEAL 62 (67)
T ss_pred CCceEEEEcC--CCeEEEECHHHHHHhCCCHHHHcCCcHHHhcCcccHHHHHHHH
Confidence 3444444443 4567889999999999999888877666555555544333333
No 151
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.76 E-value=1e+02 Score=36.52 Aligned_cols=57 Identities=25% Similarity=0.296 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHHHHHHhhHHHHHhhHHHHHH
Q 003250 32 RYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEE 111 (836)
Q Consensus 32 r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee 111 (836)
.+|+++++.|+- +--.|...-|.-.++-- + -+++...+..+|+.|+++|+.|++.
T Consensus 41 ~ltpee~kalGi---egDTP~DTlrTlva~~k---------~-------------~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 41 ELSPEELKALGI---EGDTPADTLRTLVAEVK---------E-------------LRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred cCCcchhHhcCC---CCCCccchHHHHHHHHH---------H-------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888777753 33455555454443221 0 1233344555666666666666654
Q ss_pred HH
Q 003250 112 ND 113 (836)
Q Consensus 112 ~~ 113 (836)
..
T Consensus 96 ~~ 97 (472)
T TIGR03752 96 EQ 97 (472)
T ss_pred hh
Confidence 43
No 152
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=34.44 E-value=81 Score=34.20 Aligned_cols=47 Identities=32% Similarity=0.367 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 88 RKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 88 rqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
-.++..++.+|+.|++.|+.|..++.++..++..++.|.+.|+++.+
T Consensus 103 ~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 103 TEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 34667788888888888888888888888888888888777776654
No 153
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=34.40 E-value=1.2e+02 Score=27.40 Aligned_cols=98 Identities=12% Similarity=-0.009 Sum_probs=59.9
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCee
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHV 805 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf 805 (836)
..+.+|+-.+. +=.+.|-|++|..+|... ....+-|..--..+...+.....+.++...+= ..--+.+...||.|
T Consensus 7 s~~~~i~~vD~--~~~I~~~n~~a~~~f~~~-~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~ 81 (106)
T PF13596_consen 7 SMPIGIIFVDR--NLRIRYFNPAAARLFNLS-PSDIGRPLFDIHPPLSYPNLKKIIEQVRSGKE--EEFEIVIPNGGRWY 81 (106)
T ss_dssp HSSSEEEEEET--TSBEEEE-SCGC-SS----GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTSB--SEEEEEEEETTEEE
T ss_pred cCCCCEEEEcC--CCeEEEeChhHhhhcCCC-hHHCCCCHHHcCCccchHHHHHHHHHHHcCCC--ceEEEEecCCCEEE
Confidence 44555666555 567889999999999865 45567777666555556666666766665432 11223355667766
Q ss_pred EEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 806 SYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 806 ~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
.+ .+=.+.| ++|++-|...+|.+
T Consensus 82 ~~---~~~P~~~-~~g~~~G~v~~~~D 104 (106)
T PF13596_consen 82 LV---RYRPYRD-EDGEYAGAVITFQD 104 (106)
T ss_dssp EE---EEEEEE--TTS-EEEEEEEEEE
T ss_pred EE---EEEEEEC-CCCCEEEEEEEEEe
Confidence 66 5566778 99999999999975
No 154
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=34.00 E-value=2.6e+02 Score=34.97 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=55.0
Q ss_pred cCChhHHHHHHhh---hhhcccccccchhhhhhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcc
Q 003250 456 NVPPALLVRFLRE---HRSEWADFNVDAYSAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQ 532 (836)
Q Consensus 456 pvpp~~lf~FLRd---~RseWd~l~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~ 532 (836)
+.+|+.||++|-+ .|.|||.. . ++ | +.+-+| +...+|.--++...-.
T Consensus 236 ~aspE~Ifd~Vm~~~~~R~eWD~~-----~----~~----------~-----~vIE~I----D~htdI~Y~~~~~~~~-- 285 (719)
T PLN00188 236 EATCEEIFELVMSMDGTRFEWDCS-----F----QY----------G-----SLVEEV----DGHTAILYHRLQLDWF-- 285 (719)
T ss_pred cCCHHHHHHHHhccCcccccchhc-----c----cc----------e-----EEEEEe----cCCeEEEEEEeccccc--
Confidence 7899999999974 99999975 1 11 2 333333 3333444333321100
Q ss_pred cccccCCceEEEeeecccCCCCCCceeEEE-EeeccCCC----CCCC--cccCCccEEecC
Q 003250 533 EDAFVSRDIHLLQICSGVDENAVGACSELV-FAPIDEMF----PDDG--PLLPSGFRIIPL 586 (836)
Q Consensus 533 ~~~~~~~~~liLQe~s~~De~~~Gs~s~vV-yAPvD~~d----s~~v--~LLPSGF~I~P~ 586 (836)
-.-+-+||-.++.- +.-+ ..|+ |++ |-+|.-.. +.+| -+-|+||.|.|+
T Consensus 286 ~~~ispRDFV~~Ry-wrr~--eDGs--Yvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL 341 (719)
T PLN00188 286 PMFVWPRDLCYVRY-WRRN--DDGS--YVVLFRSREHENCGPQPGFVRAHLESGGFNISPL 341 (719)
T ss_pred cCccCcceeEEEEE-EEEc--CCCc--EEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEEC
Confidence 01245677777775 2233 3563 544 55666542 3333 377999999996
No 155
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=33.94 E-value=2.2e+02 Score=28.07 Aligned_cols=107 Identities=12% Similarity=0.140 Sum_probs=60.9
Q ss_pred eeeEEEeChhHHHHHhcCccchhhhCCCceEeeeecCCCccHHHHHHHhh--hccccccCCceeeEEeeeeeccCCcEEE
Q 003250 215 ACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQA--YAPTTLAPARDFWTLRYTTTLDNGSLVV 292 (836)
Q Consensus 215 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~--~v~SPLVp~Re~~fLRyckq~~~G~waV 292 (836)
.+-+|.-.+..+-+++-|..+|-+.||.+.-+.++..|..|.. +.+ ....+ ..+.-|.=|.+ +....|-|
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~----~r~~i~~~~~--g~~~~w~s~~~--~~~~~~~i 76 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR----FRLTMHPDAN--GTVWSWVSERT--LDPVNRTV 76 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE----EEEEEEeccC--CEEEEEEEEEE--ecCCCcEE
Confidence 4556677899999999999999999998766666665544311 223 22222 12222222333 33344433
Q ss_pred EEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecc
Q 003250 293 CERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLE 343 (836)
Q Consensus 293 vDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d 343 (836)
.=..+.. +| | ..+=-...+++.++| |+|++.-+++..
T Consensus 77 ~~~~~~~---~p-------~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~ 113 (146)
T cd08860 77 RARRVET---GP-------F---AYMNIRWEYTEVPEG-TRMRWVQDFEMK 113 (146)
T ss_pred EEEEecC---CC-------c---ceeeeeEEEEECCCC-EEEEEEEEEEEC
Confidence 3112211 11 1 112223446888877 999999998865
No 156
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.10 E-value=1.5e+02 Score=26.18 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=17.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
+..+++...........+..+|+.||..|++||+
T Consensus 31 L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 31 LRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444566666666666664
No 157
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=32.95 E-value=2.8e+02 Score=25.58 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=62.3
Q ss_pred eeeEEEeChhHHHHHhcCccchhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEE
Q 003250 215 ACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCE 294 (836)
Q Consensus 215 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 294 (836)
.+-.|...+.++.+.|.|.+.|.+.+|.+.-+.++..+.+|.-.. ..+.+ ...+.++.+.++|...- .... -..
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~-~~~i-~~~ 79 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEM--VRIGV--GAYGIKDTYALEYTWDG-AGSV-SWT 79 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEE--EEEEE--eeeeEEEEEEEEEEEcC-CCcE-EEE
Confidence 455677789999999999999999999886666655444432111 11111 22244555556665432 2221 111
Q ss_pred eecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeeccc
Q 003250 295 RSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEA 344 (836)
Q Consensus 295 vSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~ 344 (836)
. .++ .+ +.... .-.-+.+.++ +|+|+|.-|++..-
T Consensus 80 ~-~~~---~~-------~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 80 L-VEG---EG-------NRSQE---GSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred E-ecc---cc-------eeEEE---EEEEEEECCC-CEEEEEEEEEEecC
Confidence 1 111 00 11111 2356788877 59999999998743
No 158
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=32.93 E-value=1.6e+02 Score=26.25 Aligned_cols=41 Identities=32% Similarity=0.363 Sum_probs=23.6
Q ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 003250 92 SRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQ 132 (836)
Q Consensus 92 ~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~e 132 (836)
..++.++..|+.+|..+.+++..|..+.++|+.|-...+..
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666666555444443
No 159
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=32.07 E-value=78 Score=35.07 Aligned_cols=36 Identities=31% Similarity=0.269 Sum_probs=24.9
Q ss_pred HHHHhhHHHHHHHHH---HHHHHHHHHHHhHHHHHhhcc
Q 003250 100 KLTAMNKLLMEENDR---LQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 100 ~l~~~n~~l~ee~~~---l~~~~~~L~~ENa~L~~el~r 135 (836)
.+..+|+.+++++.+ +..+.++|+.||.+||+.|.-
T Consensus 70 ~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 70 DLALENEELKKELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344555556555543 455667899999999999874
No 160
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=32.03 E-value=2e+02 Score=34.43 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=65.8
Q ss_pred HHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCC
Q 003250 722 KNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTM 801 (836)
Q Consensus 722 ~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~ 801 (836)
..|=+-+++|+..+.+. ...|.|+||.+||..+=+++.+.|..--.... .+.+++++|... .....+.-.
T Consensus 84 aIL~sm~eGVi~vD~~G--~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~-------~l~~~le~~~~~-~~~~~v~~~ 153 (520)
T PRK10820 84 ALLEALPEPVLSIDMKG--KVELANPASCQLFGQSEEKLRNHTAAQLINGF-------NFLRWLESEPQD-SHNEHVVIN 153 (520)
T ss_pred HHHHhCCCcEEEECCCC--eeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcc-------hHHHHHHcCCCc-cceEEEEEC
Confidence 44446699999999876 58999999999999998888887765544332 244566666542 223556667
Q ss_pred CCeeEEcCeEEeEeecCCCCce--EEEEEEecC
Q 003250 802 GRHVSYEQAVAWKVLAPEDNTV--HCLAFSFIN 832 (836)
Q Consensus 802 Grrf~ie~A~vW~v~d~~~g~~--~gqAa~f~~ 832 (836)
|+.|.++-.-+. +.| ++|.. .|.-.+|.+
T Consensus 154 g~~~~v~~~PI~-~~d-~~g~~~~~GaVivlrd 184 (520)
T PRK10820 154 GQDFLMEITPVY-LQD-ENDQHVLVGAVVMLRS 184 (520)
T ss_pred CEEEEEEEEeee-ecC-CCCceeEEEEEEEecc
Confidence 887776543332 126 66654 677666643
No 161
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=31.28 E-value=91 Score=35.45 Aligned_cols=50 Identities=8% Similarity=0.038 Sum_probs=39.5
Q ss_pred hHHHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCC
Q 003250 719 SVLKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFD 770 (836)
Q Consensus 719 ~~~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae 770 (836)
..++.++ +.|++|+..+. +-.+.|.|.+|.++|.++|+++.+.+......
T Consensus 98 ~~~~~~~~~~~~~i~~~d~--~g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~~ 148 (430)
T PRK11006 98 KRFRSGAESLPDAVVLTTE--EGNIFWCNGLAQQLLGFRWPEDNGQNILNLLR 148 (430)
T ss_pred HHHHHHHHhCCCeEEEEcC--CCceeHHHHHHHHHhCCCChHhCCCcHHHHhc
Confidence 3455555 77888888874 67899999999999999999998887654443
No 162
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=31.25 E-value=2.8e+02 Score=25.39 Aligned_cols=35 Identities=9% Similarity=0.006 Sum_probs=27.2
Q ss_pred eeEEEeChhHHHHHhcCccchhhhCCCceEeeeec
Q 003250 216 CGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFP 250 (836)
Q Consensus 216 ~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~ 250 (836)
+..|...+.++-+.|.|.+.|.+-+|.+..+....
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~ 40 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAVASCELEG 40 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCcceEEeec
Confidence 34566778899999999999998888776555544
No 163
>PHA03155 hypothetical protein; Provisional
Probab=31.23 E-value=51 Score=31.89 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 112 NDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 112 ~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
.++|.+++++|++||..||+.+-+
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467889999999999999999976
No 164
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=31.17 E-value=53 Score=32.03 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhccC
Q 003250 112 NDRLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 112 ~~~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
.++|.+++++|++||..||.++.+.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4678899999999999999999874
No 165
>PHA03162 hypothetical protein; Provisional
Probab=30.37 E-value=53 Score=32.55 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 112 NDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 112 ~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
.++|.+++++|++||..||+++-+
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999965
No 166
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.95 E-value=74 Score=26.82 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHHHHHhhccC
Q 003250 114 RLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 114 ~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
...+++..|..||..|+.||.+.
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777999999999998753
No 167
>PRK10724 hypothetical protein; Provisional
Probab=29.43 E-value=1.1e+02 Score=30.87 Aligned_cols=107 Identities=12% Similarity=0.156 Sum_probs=61.7
Q ss_pred ceeeEEEeChhHHHHHhcCccchhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEE
Q 003250 214 RACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVC 293 (836)
Q Consensus 214 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVv 293 (836)
+.+.+|.-.+.++.+.+.|.++|-+..|-..-..++....++ +.+++.+--.- ..+-+.-|+.-. .++ .+.+
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~----~~a~l~v~~~g--~~~~f~srv~~~-~~~-~I~~ 89 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQ----MTAAVDVSKAG--ISKTFTTRNQLT-SNQ-SILM 89 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCE----EEEEEEEeeCC--ccEEEEEEEEec-CCC-EEEE
Confidence 556788889999999999999999988855433333333333 24555442222 233333333332 233 3333
Q ss_pred EeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecc
Q 003250 294 ERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLE 343 (836)
Q Consensus 294 DvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d 343 (836)
..+++ + ...+. .-.-+++.++|.|+|+.--++|+.
T Consensus 90 -~~~~G----p----F~~l~------g~W~f~p~~~~~t~V~~~l~fef~ 124 (158)
T PRK10724 90 -QLVDG----P----FKKLI------GGWKFTPLSQEACRIEFHLDFEFT 124 (158)
T ss_pred -EecCC----C----hhhcc------ceEEEEECCCCCEEEEEEEEEEEc
Confidence 22332 2 11233 333467788788999998888855
No 168
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.39 E-value=91 Score=26.92 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 108 LMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 108 l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
++.+...+++++.+++.||..|++|+++
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555554
No 169
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.09 E-value=1.3e+02 Score=30.84 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=13.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 003250 103 AMNKLLMEENDRLQKQVSQLVCENGYMKQQ 132 (836)
Q Consensus 103 ~~n~~l~ee~~~l~~~~~~L~~ENa~L~~e 132 (836)
.+|+.+++++.+++.+...|..||..|+++
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 170
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.01 E-value=84 Score=29.80 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 106 KLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 106 ~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
..++++...++.+.++++.+|+.|+.|+++
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555566666666666655
No 171
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.72 E-value=1.4e+02 Score=31.95 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhHHHHHhhcc
Q 003250 114 RLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 114 ~l~~~~~~L~~ENa~L~~el~r 135 (836)
++..+..+|..||+.|+++++.
T Consensus 190 ~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 190 GLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HcccHHHHHHHHHHHHHHHHhc
Confidence 3444555666666666666654
No 172
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.97 E-value=1.6e+02 Score=32.94 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=24.4
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 003250 96 TVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQ 132 (836)
Q Consensus 96 ~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~e 132 (836)
.+.+.+..+.+.|..+|++|..++++|.-|-++||+=
T Consensus 248 ae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 248 AEKEALLGELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777777777777777777777654
No 173
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.32 E-value=1.7e+02 Score=34.92 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=32.2
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 91 ASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 91 ~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
...++..-++++.+.+.+......++..++.|..||++|+++++.
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455556666666666677888888999999999999864
No 174
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=25.88 E-value=2.1e+02 Score=26.86 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=25.3
Q ss_pred eeEEEeChhHHHHHhcCccchhhhCCC--ceEee
Q 003250 216 CGLVSLEPTKIAEILKDRPSWFRDCRS--LEVFT 247 (836)
Q Consensus 216 ~glV~m~~~~LVe~lmD~~~W~~~f~~--~~~l~ 247 (836)
+.+|.-.+..+-++|-|.++|-+..|. ++++.
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~~~~~~~~ 37 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPTVHVERLE 37 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCCceEEEEE
Confidence 456667889999999999999997784 44443
No 175
>PF15058 Speriolin_N: Speriolin N terminus
Probab=25.81 E-value=1.1e+02 Score=32.35 Aligned_cols=38 Identities=34% Similarity=0.358 Sum_probs=26.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003250 99 RKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTAP 137 (836)
Q Consensus 99 ~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~~ 137 (836)
+-++...+.+..||++|+|++. |-.||.+||.-|...+
T Consensus 8 eGlrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea~ 45 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVR-LIRENHELKSALGEAC 45 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 3355666777788888888775 6678888887765543
No 176
>PRK13560 hypothetical protein; Provisional
Probab=25.11 E-value=4e+02 Score=32.38 Aligned_cols=102 Identities=14% Similarity=0.050 Sum_probs=57.4
Q ss_pred cCCCceeccCCCCCceeecc-cHHHHHhhcCCHHHhhcCcccccCCcccHHHH------------------HHHHHHHHH
Q 003250 726 QHSDAILCCSLKSMPVFIFA-NQAGLDMLETTLVALQDITLDKIFDESGRKAL------------------CADFAKLMQ 786 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~ya-N~aal~l~E~~w~~l~~lpsr~tae~~~r~~r------------------~~~l~~v~~ 786 (836)
+.|++|+..+. +-.+.|. |.++..|+.++.+++.+.+......+ .+++. ...+.+..+
T Consensus 340 ~~~~~i~~~d~--~g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (807)
T PRK13560 340 AAPIAAIGLDA--DGNICFVNNNAAERMLGWSAAEVMGKPLPGMDPE-LNEEFWCGDFQEWYPDGRPMAFDACPMAKTIK 416 (807)
T ss_pred hCcccEEEEcC--CCCEEEecCHHHHHHhCCCHHHHcCCCccccChh-hhhhhhhchhhhcCCcCCcchhhhhhHHHHHh
Confidence 45666666554 4456665 67787899999999998775432211 11111 011223344
Q ss_pred hCCccCCCeeE-EcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 787 QGFTYLPAGIC-MSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 787 qGy~~~y~GvR-iss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
+|-.....-++ ....|+.+++. ..+-.+.| ++|...|.-.++.+
T Consensus 417 ~~~~~~~~e~~~~~~~g~~~~~~-~~~~p~~d-~~g~~~~~~~~~~D 461 (807)
T PRK13560 417 GGKIFDGQEVLIEREDDGPADCS-AYAEPLHD-ADGNIIGAIALLVD 461 (807)
T ss_pred cCCcccCceEEEEcCCCCeEEEE-EEEeeeEC-CCCCEEEEEEEeeh
Confidence 44432222233 34567766663 34556778 88998887666544
No 177
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=25.03 E-value=1.3e+02 Score=27.87 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHH------HHHHHHHHhHHHHHhhccC
Q 003250 104 MNKLLMEENDRLQK------QVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 104 ~n~~l~ee~~~l~~------~~~~L~~ENa~L~~el~r~ 136 (836)
+++.+++|++-|.. ++.+..+||-+|++|+.|.
T Consensus 25 e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl 63 (86)
T PF12711_consen 25 ENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRL 63 (86)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433 3456889999999998874
No 178
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=25.01 E-value=2.6e+02 Score=24.70 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=25.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 98 NRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 98 n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
+......++.|+.+.+....+++....+|..|++|++.
T Consensus 21 ~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~ 58 (69)
T PF14197_consen 21 NSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEA 58 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666667777777777777777777764
No 179
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=23.94 E-value=1.9e+02 Score=27.32 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=59.6
Q ss_pred eeeEEEeChhHHHHHhcCccchhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEE
Q 003250 215 ACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCE 294 (836)
Q Consensus 215 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 294 (836)
.+-.|...+..+.+++-|.+.|.+.+|.++-..++..+.++ +.+++.+..|. -.|++. .|++- ..+..+ -=
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~----~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~i-~~ 73 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDE----LEAELTVGFGG-IRESFT-SRVTL--VPPESI-EA 73 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCE----EEEEEEEeecc-ccEEEE-EEEEe--cCCCEE-EE
Confidence 34556667888899999999999999876554544433332 11223333332 133433 33332 123332 11
Q ss_pred eecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecc
Q 003250 295 RSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLE 343 (836)
Q Consensus 295 vSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d 343 (836)
.++++ + | +.+=--..+++.++|.|+|+|.-|++..
T Consensus 74 ~~~~g----~-------~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~ 108 (138)
T cd07813 74 ELVDG----P-------F---KHLEGEWRFKPLGENACKVEFDLEFEFK 108 (138)
T ss_pred EecCC----C-------h---hhceeEEEEEECCCCCEEEEEEEEEEEC
Confidence 22232 1 0 0111245578899999999999999976
No 180
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=23.59 E-value=22 Score=46.40 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=49.0
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 30 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 30 R~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
+++++.-|...|..+|+...+|.-.++..++.-| ++..|.+-.|||++++++.+
T Consensus 448 s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L----~vhmRskhp~~~~~~c~~gq 501 (1406)
T KOG1146|consen 448 SKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTL----GVHMRSKHPESQSAYCKAGQ 501 (1406)
T ss_pred hhcccccceeeeecccccccCCccchhhhhHHHh----hhcccccccccchhHhHhcc
Confidence 5677888888999999999999999999999999 99999999999999988876
No 181
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.57 E-value=2e+02 Score=31.39 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=24.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 98 NRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 98 n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
|..|..+.....+++..+..++..|+..|-.|.+.+-
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666777777777778877777654
No 182
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.33 E-value=2e+02 Score=30.52 Aligned_cols=30 Identities=27% Similarity=0.195 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 106 KLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 106 ~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
..|+++|++|..+++.++.|+..|+.|++.
T Consensus 135 ~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 135 NGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555555543
No 183
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.22 E-value=2.7e+02 Score=24.54 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=15.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQ 132 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~e 132 (836)
|-..+..++++|..|..++..+..|++.|++.
T Consensus 12 Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ek 43 (65)
T TIGR02449 12 LLEYLERLKSENRLLRAQEKTWREERAQLLEK 43 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445544444445555555555443
No 184
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=23.16 E-value=96 Score=35.13 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=9.3
Q ss_pred HHHHHhhHHHHHhhHHHHHHHHH
Q 003250 92 SRLQTVNRKLTAMNKLLMEENDR 114 (836)
Q Consensus 92 ~~l~~~n~~l~~~n~~l~ee~~~ 114 (836)
..|+.+|++|++||+.|+.+.++
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVer 57 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVER 57 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 185
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.06 E-value=1.6e+02 Score=26.06 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003250 107 LLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 107 ~l~ee~~~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
.+..+..+++.+..+++.||..|+.|+.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556666666666666666653
No 186
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=22.89 E-value=69 Score=26.08 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=13.5
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 97 VNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 97 ~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
.|..+-..|..+.-....++++..+|..||..||++.
T Consensus 8 qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 8 QNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3556667778888888899999999999999999875
No 187
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=22.47 E-value=2.3e+02 Score=27.37 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=28.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 99 RKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 99 ~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
-.+.++-..|++...++-.+-..|++||..||+-|..
T Consensus 18 ~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 18 GVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3455666777777778877788899999999988875
No 188
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=22.02 E-value=2.8e+02 Score=29.30 Aligned_cols=32 Identities=34% Similarity=0.386 Sum_probs=17.9
Q ss_pred cchhHHHHHHHHHHHHHhhHHHHHhhHHHHHHH
Q 003250 80 NRRCREKQRKEASRLQTVNRKLTAMNKLLMEEN 112 (836)
Q Consensus 80 NRRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~ 112 (836)
|||.+.- -.+-..++..|.+|..+|+.|++..
T Consensus 47 NrrlQ~h-l~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 47 NRRLQQH-LNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554432 1344556666777777776666544
No 189
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=21.71 E-value=1.6e+02 Score=24.99 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCccCCCeeEEcCCCCeeEEcCeEEeE
Q 003250 775 KALCADFAKLMQQGFTYLPAGICMSTMGRHVSYEQAVAWK 814 (836)
Q Consensus 775 ~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf~ie~A~vW~ 814 (836)
.+.|.-+.+.+.+|| .+|++-.++-.|.....-+|+|..
T Consensus 15 ~~fc~rVt~aL~~GW-~l~GsP~~t~~~~~~~~~QAvvke 53 (54)
T PF08410_consen 15 SAFCHRVTEALNEGW-QLYGSPTYTFDGGGMICGQAVVKE 53 (54)
T ss_pred HHHHHHHHHHHHcCC-EecCCceEEECCCcEEEEEEEEec
Confidence 577788899999999 899998888887777777777764
No 190
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.45 E-value=1.8e+02 Score=28.07 Aligned_cols=31 Identities=26% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQ 131 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~ 131 (836)
.+.+-+.|++.+.+|.....+|+.||.-||.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788888888888888899999988874
No 191
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.39 E-value=1.1e+02 Score=31.46 Aligned_cols=19 Identities=37% Similarity=0.419 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHhHHHHHhh
Q 003250 115 LQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 115 l~~~~~~L~~ENa~L~~el 133 (836)
|..++|+|+.|-..||+|+
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 192
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=21.20 E-value=2.5e+02 Score=29.32 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=25.0
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 91 ASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 91 ~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
...|.+.|.-|+...+..+.+|+.|..+++.|..+-.++++||.
T Consensus 76 ~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 76 SEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556556555555556666666666655555555555554
No 193
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.03 E-value=1.9e+02 Score=27.65 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=23.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
+...-..+-++...|..++..|..||+.|+.|.+.+
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666677777777777777777776643
No 194
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=20.80 E-value=1.5e+02 Score=34.77 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=10.0
Q ss_pred eeecc---ccchhHHHH
Q 003250 74 IKVWF---QNRRCREKQ 87 (836)
Q Consensus 74 VKvWF---QNRRaK~Kr 87 (836)
.-+|| |||.+|.+-
T Consensus 228 ~gcw~ay~Qnk~akehv 244 (575)
T KOG4403|consen 228 GGCWFAYRQNKKAKEHV 244 (575)
T ss_pred hhhhhhhhhhhHHHHHH
Confidence 34788 888888664
No 195
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=20.60 E-value=2.3e+02 Score=29.95 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=23.1
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 94 LQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 94 l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
+...+.+|.+.++.+.+++.+|..+++.|..||..|..|.+.
T Consensus 79 lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~ 120 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDG 120 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 334445555555555555555555556666666666555554
No 196
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.32 E-value=3e+02 Score=26.45 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=22.4
Q ss_pred ccchhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003250 79 QNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCE 125 (836)
Q Consensus 79 QNRRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~E 125 (836)
|||-++.-+++. ...-+.|.+...+.+.+.++.+.+..+..+...+
T Consensus 57 QNRq~~~dr~ra-~~D~~inl~ae~ei~~l~~~l~~l~~~~~~~~~~ 102 (108)
T PF06210_consen 57 QNRQAARDRLRA-ELDYQINLKAEQEIERLHRKLDALREKLGELLER 102 (108)
T ss_pred hhHhHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 676554222222 2222335555566666666666655554444433
No 197
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=20.23 E-value=3e+02 Score=32.27 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=36.0
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 90 EASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 90 e~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
..+.+..++..++++.+.++......+.++++|+.||-.|.+|.-+
T Consensus 28 ~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 28 AQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677788888888888888888888899999888888765
No 198
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=20.07 E-value=26 Score=42.24 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred CCCCCCcccCCHHHHHHHHHh-HhcCCCCCHHHHHHHHHhCCccc-----CCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERV-YSECPKPSSLRRQQLIRECPILS-----NIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~-F~~~~~Ps~~~R~eLA~~L~~~~-----gL~~rQVKvWFQNRRaK~Krrq 89 (836)
...|+++.+|-.+|..++... |.++.++......+--.++ |+ ..+.+.|++||.|||.++|+-+
T Consensus 689 ~~pk~~~~k~f~~~~~ev~~~w~~k~~s~s~~~v~eYkee~--~~~~~~e~~~~kn~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 689 DLPKKTIIKFFQNQRYEVKHHWKLKTRSGSWVDVAEYKEEE--LLMPYEEKFESKNVQFWFKVRREEEKRLK 758 (769)
T ss_pred cccHHHHHHhhhcceeecchhheecccCchhHHHHHhhHHh--hcchhhhhhhhcchHHHHHHHHHHHhhhh
Done!