Query 003250
Match_columns 836
No_of_seqs 384 out of 1548
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 18:40:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.7 1.7E-17 5.8E-22 170.4 12.8 184 161-362 21-214 (231)
2 2cue_A Paired box protein PAX6 99.6 8.8E-16 3E-20 134.5 6.3 64 24-91 5-68 (80)
3 2h1k_A IPF-1, pancreatic and d 99.6 3.4E-16 1.2E-20 131.0 3.4 61 25-89 2-62 (63)
4 1nk2_P Homeobox protein VND; h 99.6 7.7E-16 2.6E-20 133.9 5.7 64 24-91 7-70 (77)
5 2vi6_A Homeobox protein nanog; 99.6 2E-16 6.8E-21 132.0 1.1 61 25-89 2-62 (62)
6 2dmt_A Homeobox protein BARH-l 99.6 5.8E-16 2E-20 135.6 3.9 62 24-89 15-76 (80)
7 2dmu_A Homeobox protein goosec 99.6 6.3E-16 2.2E-20 131.9 4.0 63 24-90 5-67 (70)
8 2da2_A Alpha-fetoprotein enhan 99.6 3.8E-16 1.3E-20 133.2 2.3 63 24-90 5-67 (70)
9 1ig7_A Homeotic protein MSX-1; 99.6 8.3E-16 2.8E-20 126.3 4.2 57 27-87 1-57 (58)
10 2cra_A Homeobox protein HOX-B1 99.6 4.1E-16 1.4E-20 133.2 2.3 62 24-89 5-66 (70)
11 2da3_A Alpha-fetoprotein enhan 99.6 4.9E-16 1.7E-20 135.6 2.8 62 24-89 15-76 (80)
12 2e1o_A Homeobox protein PRH; D 99.6 1.1E-15 3.8E-20 130.5 4.8 62 25-90 6-67 (70)
13 1puf_A HOX-1.7, homeobox prote 99.6 1.6E-15 5.5E-20 131.9 5.7 64 23-90 10-73 (77)
14 2dmq_A LIM/homeobox protein LH 99.6 1.5E-15 5.3E-20 132.7 5.3 63 24-90 5-67 (80)
15 2hdd_A Protein (engrailed home 99.6 7.1E-16 2.4E-20 128.2 2.9 58 26-87 3-60 (61)
16 2dms_A Homeobox protein OTX2; 99.6 1.2E-15 3.9E-20 133.7 4.4 63 24-90 5-67 (80)
17 3a01_A Homeodomain-containing 99.6 1.4E-15 4.8E-20 137.1 5.0 64 24-91 15-78 (93)
18 1ahd_P Antennapedia protein mu 99.6 7.3E-16 2.5E-20 131.1 2.9 61 26-90 2-62 (68)
19 1yz8_P Pituitary homeobox 2; D 99.6 5.6E-16 1.9E-20 131.6 2.1 62 25-90 2-63 (68)
20 1wh5_A ZF-HD homeobox family p 99.6 8.2E-16 2.8E-20 135.2 2.6 60 24-87 15-78 (80)
21 2da1_A Alpha-fetoprotein enhan 99.6 8.4E-16 2.9E-20 131.1 2.5 62 24-89 5-66 (70)
22 1ftt_A TTF-1 HD, thyroid trans 99.5 1.2E-15 4.2E-20 129.6 3.3 61 26-90 2-62 (68)
23 1jgg_A Segmentation protein EV 99.5 1.2E-15 4.2E-20 126.3 3.1 58 27-88 2-59 (60)
24 2djn_A Homeobox protein DLX-5; 99.5 1E-15 3.5E-20 130.7 2.7 62 24-89 5-66 (70)
25 2kt0_A Nanog, homeobox protein 99.5 8.9E-16 3.1E-20 135.3 2.3 62 24-89 20-81 (84)
26 1zq3_P PRD-4, homeotic bicoid 99.5 2.1E-15 7.1E-20 128.2 4.2 61 26-90 2-62 (68)
27 1fjl_A Paired protein; DNA-bin 99.5 2.3E-15 7.8E-20 132.1 4.3 63 24-90 16-78 (81)
28 1b8i_A Ultrabithorax, protein 99.5 1.5E-15 5.3E-20 133.4 2.7 63 23-89 17-79 (81)
29 3a02_A Homeobox protein arista 99.5 1.4E-15 4.8E-20 126.0 2.1 57 29-89 2-58 (60)
30 2r5y_A Homeotic protein sex co 99.5 1.9E-15 6.4E-20 134.7 3.0 63 23-89 25-87 (88)
31 2hi3_A Homeodomain-only protei 99.5 3.2E-15 1.1E-19 128.8 4.3 61 26-90 2-63 (73)
32 2l7z_A Homeobox protein HOX-A1 99.5 2.4E-15 8.3E-20 129.6 3.6 61 25-89 6-66 (73)
33 1uhs_A HOP, homeodomain only p 99.5 3.4E-15 1.2E-19 128.1 4.3 59 27-89 2-61 (72)
34 3rkq_A Homeobox protein NKX-2. 99.5 2.4E-15 8.1E-20 123.1 3.0 56 27-86 3-58 (58)
35 1bw5_A ISL-1HD, insulin gene e 99.5 1.2E-15 4E-20 128.8 1.2 59 26-88 3-61 (66)
36 2da4_A Hypothetical protein DK 99.5 2E-15 6.8E-20 132.1 2.7 62 24-89 6-71 (80)
37 2k40_A Homeobox expressed in E 99.5 2E-15 7E-20 127.7 2.5 60 27-90 2-61 (67)
38 1wh7_A ZF-HD homeobox family p 99.5 1.7E-15 5.7E-20 133.3 1.9 59 24-87 15-78 (80)
39 3a03_A T-cell leukemia homeobo 99.5 3.2E-15 1.1E-19 122.4 3.2 54 31-88 2-55 (56)
40 2da5_A Zinc fingers and homeob 99.5 3.3E-15 1.1E-19 129.5 3.4 60 27-90 8-67 (75)
41 2m0c_A Homeobox protein arista 99.5 3.1E-15 1E-19 128.9 3.1 64 23-90 6-69 (75)
42 2ecc_A Homeobox and leucine zi 99.5 4.4E-15 1.5E-19 129.4 4.0 58 28-89 5-62 (76)
43 1akh_A Protein (mating-type pr 99.5 2.7E-15 9.1E-20 124.5 1.9 58 25-86 4-61 (61)
44 1b72_A Protein (homeobox prote 99.5 5.4E-15 1.8E-19 134.1 3.5 63 24-90 32-94 (97)
45 2ecb_A Zinc fingers and homeob 99.5 5.4E-15 1.9E-19 132.6 3.1 61 27-91 12-72 (89)
46 2ly9_A Zinc fingers and homeob 99.5 5.8E-15 2E-19 127.2 2.3 61 26-90 6-66 (74)
47 2cuf_A FLJ21616 protein; homeo 99.5 1.2E-14 4E-19 131.4 4.2 63 24-90 5-82 (95)
48 2dn0_A Zinc fingers and homeob 99.5 5.3E-15 1.8E-19 128.3 1.6 61 26-90 8-68 (76)
49 3nar_A ZHX1, zinc fingers and 99.5 8E-15 2.7E-19 132.8 2.3 61 25-89 24-84 (96)
50 1puf_B PRE-B-cell leukemia tra 99.5 1.5E-14 5.1E-19 124.4 3.3 60 27-90 2-64 (73)
51 1x2n_A Homeobox protein pknox1 99.5 2.7E-14 9.2E-19 122.8 4.6 62 24-89 5-69 (73)
52 1k61_A Mating-type protein alp 99.5 1.8E-14 6.3E-19 119.2 2.9 55 29-87 1-58 (60)
53 1b72_B Protein (PBX1); homeodo 99.5 3.1E-14 1.1E-18 126.3 4.4 60 27-90 2-64 (87)
54 2cqx_A LAG1 longevity assuranc 99.4 9.5E-15 3.3E-19 125.9 0.7 57 27-87 9-66 (72)
55 2dmp_A Zinc fingers and homeob 99.4 3.6E-14 1.2E-18 127.0 3.9 60 27-90 14-73 (89)
56 1du6_A PBX1, homeobox protein 99.4 1.2E-14 4.2E-19 121.7 0.3 58 26-87 3-63 (64)
57 1au7_A Protein PIT-1, GHF-1; c 99.4 2.5E-14 8.7E-19 139.0 1.1 61 24-88 85-145 (146)
58 2l9r_A Homeobox protein NKX-3. 99.4 3E-14 1E-18 122.0 1.0 56 31-90 9-64 (69)
59 3nau_A Zinc fingers and homeob 99.4 6.2E-14 2.1E-18 118.7 2.8 53 33-89 11-63 (66)
60 1mnm_C Protein (MAT alpha-2 tr 99.4 7.2E-14 2.5E-18 124.2 3.3 58 25-86 26-86 (87)
61 1le8_B Mating-type protein alp 99.4 6.2E-14 2.1E-18 123.7 2.6 59 27-89 3-64 (83)
62 1e3o_C Octamer-binding transcr 99.4 4.4E-14 1.5E-18 139.2 1.8 60 25-88 100-159 (160)
63 2dmn_A Homeobox protein TGIF2L 99.4 1.2E-13 4.1E-18 122.0 4.3 61 25-89 6-69 (83)
64 1lfb_A Liver transcription fac 99.4 3.5E-14 1.2E-18 129.7 0.7 64 24-91 7-91 (99)
65 1wi3_A DNA-binding protein SAT 99.4 1.4E-13 4.8E-18 116.7 3.7 58 24-85 5-63 (71)
66 2xsd_C POU domain, class 3, tr 99.4 5.6E-14 1.9E-18 139.1 1.1 63 24-90 97-159 (164)
67 2da6_A Hepatocyte nuclear fact 99.4 1.9E-13 6.6E-18 125.1 4.5 68 24-91 4-88 (102)
68 3d1n_I POU domain, class 6, tr 99.4 1.4E-13 4.9E-18 134.2 3.3 60 24-87 91-150 (151)
69 2e19_A Transcription factor 8; 99.4 1.1E-13 3.8E-18 116.7 1.7 54 30-87 7-60 (64)
70 3l1p_A POU domain, class 5, tr 99.4 2.1E-13 7.3E-18 133.7 3.4 60 24-87 94-153 (155)
71 1x2m_A LAG1 longevity assuranc 99.3 9.2E-14 3.1E-18 117.3 0.3 49 35-87 9-58 (64)
72 2pso_A STAR-related lipid tran 99.3 2.6E-12 9E-17 133.6 8.1 178 167-357 33-212 (237)
73 2d5v_A Hepatocyte nuclear fact 99.3 3.8E-13 1.3E-17 132.7 0.8 62 24-89 95-156 (164)
74 3k2a_A Homeobox protein MEIS2; 99.2 2.4E-12 8.1E-17 109.4 2.7 54 32-89 4-60 (67)
75 3p0l_A Steroidogenic acute reg 99.2 9.5E-11 3.2E-15 119.7 10.7 171 164-348 12-189 (221)
76 1em2_A MLN64 protein; beta bar 99.1 1.1E-10 3.8E-15 119.7 9.6 179 162-358 21-207 (229)
77 1ic8_A Hepatocyte nuclear fact 99.1 6.9E-12 2.4E-16 127.3 -1.4 60 24-87 113-193 (194)
78 2lk2_A Homeobox protein TGIF1; 99.0 2E-10 6.9E-15 102.8 3.7 55 31-89 10-67 (89)
79 2da7_A Zinc finger homeobox pr 98.9 1.9E-10 6.5E-15 98.2 1.9 46 35-84 14-59 (71)
80 3fo5_A Thioesterase, adipose a 98.9 9.2E-10 3.2E-14 116.2 6.8 125 213-349 90-221 (258)
81 2h8r_A Hepatocyte nuclear fact 98.9 2.9E-10 9.8E-15 117.0 1.9 58 24-85 140-218 (221)
82 1mh3_A Maltose binding-A1 home 98.8 3.5E-10 1.2E-14 123.9 0.2 57 26-86 365-421 (421)
83 1ln1_A PC-TP, phosphatidylchol 98.8 2.8E-09 9.6E-14 107.4 5.7 127 211-349 52-185 (214)
84 1jss_A Stard4, cholesterol-reg 98.6 1.6E-07 5.6E-12 96.0 12.9 166 164-348 26-198 (224)
85 2nzz_A Penetratin conjugated G 98.3 9.4E-08 3.2E-12 72.2 -0.4 20 72-91 1-20 (37)
86 2e3n_A Lipid-transfer protein 98.2 2.2E-06 7.6E-11 89.1 8.9 177 162-349 22-222 (255)
87 3qsz_A STAR-related lipid tran 98.2 1.9E-06 6.5E-11 85.2 7.2 132 211-355 27-162 (189)
88 3t50_A Blue-light-activated hi 97.3 0.0019 6.6E-08 56.3 11.0 105 726-832 5-110 (128)
89 4eet_B Phototropin-2; LOV, blu 97.2 0.0028 9.6E-08 53.3 11.0 105 726-832 5-110 (115)
90 3ue6_A Aureochrome1; PAS/LOV d 97.0 0.0051 1.8E-07 56.0 11.6 110 722-833 39-149 (166)
91 3lyx_A Sensory BOX/ggdef domai 97.0 0.0088 3E-07 49.9 12.1 111 719-833 7-118 (124)
92 2r55_A STAR-related lipid tran 96.9 0.066 2.3E-06 54.3 19.7 151 382-586 21-181 (231)
93 1n9l_A PHOT-LOV1, putative blu 96.8 0.0079 2.7E-07 52.5 10.4 103 728-832 3-106 (109)
94 2gj3_A Nitrogen fixation regul 96.6 0.017 5.9E-07 50.6 11.1 108 719-832 5-115 (120)
95 1byw_A Protein (human ERG pota 96.6 0.018 6.1E-07 46.9 10.4 93 738-832 12-106 (110)
96 3p7n_A Sensor histidine kinase 96.6 0.011 3.6E-07 59.7 10.8 112 719-832 63-176 (258)
97 3f1p_A Endothelial PAS domain- 96.5 0.019 6.6E-07 49.6 11.1 102 726-832 7-110 (117)
98 4hia_A LOV protein; PAS, HTH, 96.5 0.011 3.8E-07 55.0 10.1 107 724-832 13-120 (176)
99 3luq_A Sensor protein; PAS, hi 96.5 0.0067 2.3E-07 51.0 7.6 108 720-832 4-112 (114)
100 3d72_A Vivid PAS protein VVD; 96.5 0.017 5.9E-07 51.9 10.5 107 723-831 30-148 (149)
101 2z6d_A Phototropin-2; PAS-fold 96.4 0.028 9.7E-07 47.0 10.9 109 723-833 11-120 (130)
102 3sw1_A Sensory box protein; li 96.3 0.022 7.4E-07 51.7 10.1 113 718-832 24-138 (162)
103 3mqq_A Transcriptional regulat 96.1 0.011 3.6E-07 51.7 7.0 105 721-831 5-111 (120)
104 2l0w_A Potassium voltage-gated 96.1 0.043 1.5E-06 46.8 10.6 112 719-832 20-134 (138)
105 2v0u_A NPH1-1, LOV2; kinase, t 95.8 0.076 2.6E-06 45.6 11.0 105 726-832 10-115 (146)
106 1d06_A Nitrogen fixation regul 95.6 0.13 4.4E-06 45.5 12.1 87 723-811 21-111 (130)
107 2pr5_A Blue-light photorecepto 95.6 0.088 3E-06 46.8 10.8 104 724-831 5-109 (132)
108 3kx0_X Uncharacterized protein 95.5 0.023 7.9E-07 54.3 7.2 110 718-832 36-151 (185)
109 2wkq_A NPH1-1, RAS-related C3 95.5 0.067 2.3E-06 55.9 11.0 107 724-832 17-124 (332)
110 2r78_A Sensor protein; sensory 95.4 0.036 1.2E-06 48.7 7.5 90 718-810 10-100 (117)
111 3f1p_B ARYL hydrocarbon recept 95.2 0.05 1.7E-06 47.4 7.8 103 726-832 10-114 (121)
112 2vv6_A FIXL, sensor protein FI 95.2 0.15 5.1E-06 44.3 10.7 83 727-811 2-88 (119)
113 3k3c_A Protein RV1364C/MT1410; 95.1 0.042 1.4E-06 50.0 7.1 109 719-832 17-131 (158)
114 3ewk_A Sensor protein; PAS dom 94.9 0.24 8.3E-06 48.8 12.4 105 724-832 117-227 (227)
115 3ewk_A Sensor protein; PAS dom 94.8 0.09 3.1E-06 52.0 9.1 93 738-832 7-99 (227)
116 3mjq_A Uncharacterized protein 94.7 0.11 3.7E-06 44.3 8.4 101 725-832 6-106 (126)
117 2kdk_A ARYL hydrocarbon recept 94.5 0.16 5.5E-06 43.7 9.0 100 725-829 10-112 (121)
118 2pso_A STAR-related lipid tran 94.2 1.3 4.4E-05 45.5 16.6 173 404-671 48-226 (237)
119 1jss_A Stard4, cholesterol-reg 94.2 1.1 3.6E-05 45.4 15.7 129 405-586 42-176 (224)
120 3p0l_A Steroidogenic acute reg 94.2 1.4 4.6E-05 44.4 16.3 193 385-671 12-213 (221)
121 3olo_A Two-component sensor hi 94.1 0.26 8.8E-06 41.5 9.3 80 724-810 19-98 (118)
122 3fo5_A Thioesterase, adipose a 94.1 0.31 1.1E-05 51.2 11.7 150 378-586 43-201 (258)
123 3eeh_A Putative light and redo 94.0 0.34 1.2E-05 40.3 9.8 106 722-832 15-123 (125)
124 3fc7_A HTR-like protein, senso 94.0 0.15 5.2E-06 43.6 7.7 68 720-789 20-88 (125)
125 3mxq_A Sensor protein; PSI2, M 93.9 0.19 6.5E-06 48.2 9.0 108 721-833 24-144 (152)
126 1ln1_A PC-TP, phosphatidylchol 93.4 2.3 7.8E-05 42.1 16.2 69 392-476 12-84 (214)
127 3qsz_A STAR-related lipid tran 93.3 3.1 0.0001 40.4 16.7 54 406-476 3-58 (189)
128 3b33_A Sensor protein; structu 93.0 0.29 9.9E-06 41.8 7.8 103 722-832 11-113 (115)
129 3nja_A Probable ggdef family p 92.9 0.21 7.2E-06 42.2 6.7 104 724-832 13-119 (125)
130 1em2_A MLN64 protein; beta bar 92.3 4.8 0.00016 40.5 16.9 146 386-586 24-178 (229)
131 1v9y_A Heme PAS sensor protein 92.2 0.79 2.7E-05 40.9 9.9 106 720-831 42-151 (167)
132 3bwl_A Sensor protein; structu 91.2 0.68 2.3E-05 40.0 8.1 84 720-808 18-104 (126)
133 1ll8_A PAS kinase; PAS domain, 91.0 0.097 3.3E-06 45.1 2.3 83 727-810 7-93 (114)
134 3a0s_A Sensor protein; PAS-fol 90.8 2.4 8.3E-05 33.1 10.5 93 728-832 2-96 (96)
135 4hi4_A Aerotaxis transducer AE 90.7 1.3 4.4E-05 38.9 9.6 98 721-832 8-117 (121)
136 3mfx_A Sensory BOX/ggdef famil 90.5 0.15 5.3E-06 46.9 3.3 89 720-810 9-104 (129)
137 3icy_A Sensor protein; sensory 90.4 0.45 1.5E-05 40.0 6.0 108 720-831 5-115 (118)
138 3fg8_A Uncharacterized protein 88.4 0.48 1.7E-05 41.4 4.8 64 724-789 18-81 (118)
139 3h9w_A Diguanylate cyclase wit 88.2 1.1 3.8E-05 38.2 7.0 90 739-831 13-104 (115)
140 1hjb_A Ccaat/enhancer binding 82.9 2.4 8.2E-05 37.7 6.4 47 82-135 29-75 (87)
141 4f3l_A Mclock, circadian locom 81.8 4.4 0.00015 43.8 9.4 92 739-831 260-351 (361)
142 1ci6_A Transcription factor AT 81.6 3.2 0.00011 34.5 6.4 45 82-133 16-60 (63)
143 1gu4_A CAAT/enhancer binding p 81.4 3 0.0001 36.3 6.4 46 82-134 29-74 (78)
144 3vol_A Aerotaxis transducer AE 81.4 4 0.00014 41.1 8.4 115 704-833 9-135 (233)
145 2vlg_A Sporulation kinase A; h 78.9 1.9 6.7E-05 38.5 4.6 78 726-809 7-85 (111)
146 2ys9_A Homeobox and leucine zi 77.0 0.77 2.6E-05 39.2 1.2 43 34-80 14-56 (70)
147 4eho_A Bacteriophytochrome, PA 76.4 3.4 0.00012 48.3 6.9 107 722-833 522-628 (635)
148 2wt7_A Proto-oncogene protein 76.2 5.9 0.0002 32.8 6.4 33 101-133 28-60 (63)
149 1t2k_D Cyclic-AMP-dependent tr 75.0 10 0.00035 31.0 7.5 35 99-133 25-59 (61)
150 1t2k_D Cyclic-AMP-dependent tr 74.6 6.9 0.00024 32.1 6.4 43 82-124 15-57 (61)
151 3rty_A Period circadian protei 70.7 25 0.00084 38.1 11.4 91 731-825 157-253 (339)
152 2w0n_A Sensor protein DCUS; si 70.0 5.5 0.00019 33.0 4.9 94 723-832 20-116 (118)
153 2jhe_A Transcription regulator 67.6 5.8 0.0002 37.3 5.1 86 723-822 85-170 (190)
154 1gd2_E Transcription factor PA 67.0 9 0.00031 32.7 5.5 43 86-128 26-68 (70)
155 2w6a_A ARF GTPase-activating p 66.6 14 0.00049 30.4 6.3 34 99-132 30-63 (63)
156 3s9g_A Protein hexim1; cyclin 66.3 14 0.00047 33.5 6.7 39 96-134 51-89 (104)
157 2jee_A YIIU; FTSZ, septum, coi 65.6 13 0.00043 32.7 6.2 43 92-134 23-65 (81)
158 3mr0_A Sensory box histidine k 64.1 29 0.001 30.7 8.9 102 726-832 17-121 (142)
159 3a0r_A Sensor protein; four he 63.8 11 0.00036 39.1 6.6 95 725-833 15-113 (349)
160 1jnm_A Proto-oncogene C-JUN; B 63.6 8.3 0.00028 31.8 4.6 33 101-133 27-59 (62)
161 1ci6_A Transcription factor AT 63.3 23 0.0008 29.3 7.3 29 105-133 25-53 (63)
162 2wt7_B Transcription factor MA 59.3 14 0.00048 33.0 5.5 63 68-134 17-79 (90)
163 1jnm_A Proto-oncogene C-JUN; B 59.2 17 0.00058 29.9 5.7 41 82-122 15-55 (62)
164 3tfz_A Cyclase; helix-GRIP, BE 58.2 19 0.00064 34.5 6.8 122 214-356 8-130 (172)
165 2wt7_A Proto-oncogene protein 56.8 39 0.0013 27.8 7.5 43 82-124 16-58 (63)
166 2d4r_A Hypothetical protein TT 56.7 29 0.001 30.5 7.4 107 215-344 6-112 (147)
167 4f3l_B BMAL1B; BHLH, PAS, circ 56.2 37 0.0013 37.0 9.5 89 739-830 287-378 (387)
168 2j5u_A MREC protein; bacterial 55.9 8.2 0.00028 40.3 4.1 38 94-135 24-61 (255)
169 2e3n_A Lipid-transfer protein 55.7 12 0.00041 38.2 5.3 58 404-476 45-105 (255)
170 2dgc_A Protein (GCN4); basic d 54.6 16 0.00053 30.4 4.7 13 121-133 48-60 (63)
171 1hjb_A Ccaat/enhancer binding 50.5 53 0.0018 29.1 7.7 37 99-135 32-68 (87)
172 3tl1_A WHIE ORF VI, polyketide 48.1 46 0.0016 31.8 7.7 111 214-345 6-117 (159)
173 1gu4_A CAAT/enhancer binding p 46.1 67 0.0023 27.9 7.5 35 101-135 34-68 (78)
174 1a93_B MAX protein, coiled coi 45.7 27 0.00091 25.9 4.1 28 107-134 4-31 (34)
175 1deb_A APC protein, adenomatou 45.0 16 0.00056 29.2 3.2 22 113-134 6-27 (54)
176 3p9v_A Uncharacterized protein 44.0 24 0.00082 33.4 5.0 110 214-343 10-119 (161)
177 3m91_A Proteasome-associated A 42.6 42 0.0015 26.9 5.3 36 101-136 14-49 (51)
178 2oqq_A Transcription factor HY 42.6 50 0.0017 25.5 5.3 34 101-134 8-41 (42)
179 2jn6_A Protein CGL2762, transp 42.6 5.1 0.00018 34.8 -0.0 83 31-137 4-86 (97)
180 1t6f_A Geminin; coiled-coil, c 42.0 48 0.0016 24.8 5.0 29 103-131 7-35 (37)
181 2qkp_A Uncharacterized protein 39.4 71 0.0024 29.8 7.4 106 719-833 20-130 (151)
182 1dh3_A Transcription factor CR 38.7 86 0.003 25.2 6.7 25 111-135 23-47 (55)
183 2yy0_A C-MYC-binding protein; 38.1 46 0.0016 26.8 4.9 32 103-134 19-50 (53)
184 3cax_A Uncharacterized protein 38.1 82 0.0028 33.9 8.6 102 722-833 243-344 (369)
185 2oa5_A Hypothetical protein BQ 36.4 24 0.00081 32.6 3.3 24 112-135 10-33 (110)
186 1dip_A Delta-sleep-inducing pe 35.9 29 0.001 29.8 3.5 33 102-134 14-46 (78)
187 1dh3_A Transcription factor CR 35.2 28 0.00096 28.1 3.2 24 110-133 29-52 (55)
188 2wt7_B Transcription factor MA 33.8 82 0.0028 28.1 6.3 42 83-124 42-83 (90)
189 3he5_B Synzip2; heterodimeric 32.9 82 0.0028 24.4 5.2 33 101-133 15-47 (52)
190 3hnw_A Uncharacterized protein 32.7 91 0.0031 29.7 6.9 30 104-133 104-133 (138)
191 3m9b_A Proteasome-associated A 31.4 52 0.0018 34.5 5.3 32 98-129 63-94 (251)
192 3gdi_A Period circadian protei 30.9 1.4E+02 0.0048 31.7 8.8 86 738-825 173-261 (309)
193 2dgc_A Protein (GCN4); basic d 30.0 1.7E+02 0.0058 24.1 7.2 25 111-135 31-55 (63)
194 4dj2_A Period circadian protei 29.4 1.9E+02 0.0066 30.8 9.6 87 738-826 184-273 (320)
195 2glo_A Brinker CG9653-PA; prot 29.0 21 0.00073 28.2 1.6 45 30-79 3-47 (59)
196 1go4_E MAD1 (mitotic arrest de 28.9 1.5E+02 0.005 27.0 7.1 18 117-134 75-92 (100)
197 1gd2_E Transcription factor PA 28.6 1.1E+02 0.0039 25.9 6.1 28 106-133 39-66 (70)
198 3tvq_A Multifunctional cyclase 28.4 1.7E+02 0.0058 28.1 8.2 38 214-251 6-43 (169)
199 3a5t_A Transcription factor MA 28.3 14 0.0005 33.9 0.5 66 68-137 27-92 (107)
200 3he5_B Synzip2; heterodimeric 28.3 2E+02 0.0069 22.3 6.7 39 98-136 5-43 (52)
201 4dj3_A Period circadian protei 26.5 2.6E+02 0.0091 29.7 10.1 85 738-824 182-270 (317)
202 1nkp_B MAX protein, MYC proto- 26.1 78 0.0027 27.1 4.8 31 106-136 50-80 (83)
203 1t17_A Conserved hypothetical 26.1 47 0.0016 30.4 3.6 107 214-343 5-115 (148)
204 1wlq_A Geminin; coiled-coil; 2 25.2 1.7E+02 0.0059 25.7 6.6 28 103-130 38-65 (83)
205 1uii_A Geminin; human, DNA rep 25.0 2.1E+02 0.0073 25.1 7.2 29 102-130 45-73 (83)
206 3lph_A Protein REV; helix-loop 24.1 50 0.0017 28.3 3.0 36 39-92 19-54 (72)
207 3hnw_A Uncharacterized protein 23.9 2.1E+02 0.007 27.2 7.6 43 93-135 86-128 (138)
208 3s9g_A Protein hexim1; cyclin 22.7 2.8E+02 0.0095 25.2 7.6 44 90-133 52-95 (104)
209 2jee_A YIIU; FTSZ, septum, coi 22.1 2.3E+02 0.0078 24.8 6.8 46 89-134 27-72 (81)
210 1hlv_A CENP-B, major centromer 22.1 45 0.0016 30.0 2.6 50 28-84 3-52 (131)
211 1nlw_A MAD protein, MAX dimeri 20.9 1.5E+02 0.005 25.6 5.4 31 105-135 49-79 (80)
212 1nwz_A PYP, photoactive yellow 20.5 1.2E+02 0.004 28.3 5.1 95 726-826 25-120 (125)
213 2x7l_M HIV REV; nuclear export 20.2 34 0.0012 31.7 1.3 36 39-92 16-51 (115)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=170.36 Aligned_cols=184 Identities=18% Similarity=0.250 Sum_probs=144.1
Q ss_pred hhchHHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeec-cCCCcccccceeeEEEeChhHHHHHhcC-----cc
Q 003250 161 PAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVSLEPTKIAEILKD-----RP 234 (836)
Q Consensus 161 ~~~l~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD-----~~ 234 (836)
++.+.++|+++|+|++++++.+ ..|..... +.| +.++-. ..+..+.+.|..|+|.+.+.+|++.||+ +.
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~-~~g---v~v~~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r~ 95 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRDT-AGWKICRE-GNG---VSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRV 95 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-SSCEEEEC-CSS---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHCC--CCSHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCEEEEe-CCC---EEEEEEccCCCCCcEEEEEEEECCCHHHHHHHHHhhCcchhh
Confidence 6788999999999999999754 68987532 122 222211 1234568889999999999999999977 89
Q ss_pred chhhhCCCceEeeeecCCCccHHHHHHHhhh--ccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccc
Q 003250 235 SWFRDCRSLEVFTMFPAGNAGTIELLYTQAY--APTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQF 312 (836)
Q Consensus 235 ~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~--v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~ 312 (836)
+|-..|...++|..+... .. ++| ++. .++++|++|||.++||+++.++|.|+|+.+|++. +..|+...+
T Consensus 96 ~Wd~~~~~~~vle~i~~~--~~--i~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~----~~~P~~~~~ 166 (231)
T 2r55_A 96 KWDENVTGFEIIQSITDT--LC--VSR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEH----PLCPPKPGF 166 (231)
T ss_dssp HHCTTCSEEEEEEECSSS--EE--EEE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCC----TTSCCCTTC
T ss_pred hhccccceeEEEEEcCCC--EE--EEE-EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccC----CCCCCCCCC
Confidence 999999999999988632 11 222 232 3456899999999999999999999999999984 345556689
Q ss_pred cceeecCcceeEeecC--CCccEEEEEEeeecccccccccccccccchHHHH
Q 003250 313 VRAEMLPSGCLIRPCD--GGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVA 362 (836)
Q Consensus 313 ~r~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpL~~Sg~afA 362 (836)
+|++.++|||+|++++ +|.|+|||+.|+|..-+ +| +.++++.+..+
T Consensus 167 VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~ 214 (231)
T 2r55_A 167 VRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRS 214 (231)
T ss_dssp EEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHH
T ss_pred EEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHh
Confidence 9999999999999998 78999999999998865 55 45666555543
No 2
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=8.8e-16 Score=134.49 Aligned_cols=64 Identities=27% Similarity=0.534 Sum_probs=59.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
+..+++|++||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhh
Confidence 3567889999999999999999999999999999999999 999999999999999999986654
No 3
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.59 E-value=3.4e-16 Score=131.01 Aligned_cols=61 Identities=31% Similarity=0.425 Sum_probs=55.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
..+++|++||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 356889999999999999999999999999999999999 9999999999999999999853
No 4
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.59 E-value=7.7e-16 Score=133.94 Aligned_cols=64 Identities=28% Similarity=0.466 Sum_probs=59.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
...+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+..
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhcc
Confidence 3567889999999999999999999999999999999999 999999999999999999986543
No 5
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.58 E-value=2e-16 Score=131.95 Aligned_cols=61 Identities=26% Similarity=0.327 Sum_probs=53.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
..+++|+.||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 457889999999999999999999999999999999999 9999999999999999998753
No 6
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5.8e-16 Score=135.64 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=58.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
...+++|++||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+.+
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhccc
Confidence 4567889999999999999999999999999999999999 9999999999999999999754
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.3e-16 Score=131.91 Aligned_cols=63 Identities=30% Similarity=0.545 Sum_probs=59.0
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CCCHHHeehccccccccccccCC
Confidence 4567889999999999999999999999999999999999 99999999999999999998543
No 8
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.57 E-value=3.8e-16 Score=133.16 Aligned_cols=63 Identities=24% Similarity=0.375 Sum_probs=58.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhccc
Confidence 4567889999999999999999999999999999999999 99999999999999999998543
No 9
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=8.3e-16 Score=126.33 Aligned_cols=57 Identities=30% Similarity=0.485 Sum_probs=55.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
+++|+.||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 4788999999999999999999999999999999999 99999999999999999986
No 10
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=4.1e-16 Score=133.20 Aligned_cols=62 Identities=29% Similarity=0.515 Sum_probs=58.3
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccC
Confidence 3567889999999999999999999999999999999999 9999999999999999998754
No 11
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.57 E-value=4.9e-16 Score=135.55 Aligned_cols=62 Identities=29% Similarity=0.453 Sum_probs=58.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
...+|+|++||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+++
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhc
Confidence 3567889999999999999999999999999999999999 9999999999999999999854
No 12
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=1.1e-15 Score=130.53 Aligned_cols=62 Identities=27% Similarity=0.486 Sum_probs=58.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+.
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCC
Confidence 456788999999999999999999999999999999999 99999999999999999998543
No 13
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.57 E-value=1.6e-15 Score=131.89 Aligned_cols=64 Identities=30% Similarity=0.405 Sum_probs=59.4
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
.+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+...
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhh
Confidence 34567889999999999999999999999999999999999 99999999999999999998554
No 14
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=132.65 Aligned_cols=63 Identities=16% Similarity=0.347 Sum_probs=59.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
...+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999 99999999999999999998653
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.56 E-value=7.1e-16 Score=128.22 Aligned_cols=58 Identities=33% Similarity=0.569 Sum_probs=53.1
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
.+++|+.||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 46889999999999999999999999999999999999 99999999999999999986
No 16
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.2e-15 Score=133.65 Aligned_cols=63 Identities=22% Similarity=0.523 Sum_probs=59.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
...+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHH
Confidence 3567889999999999999999999999999999999999 99999999999999999998654
No 17
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.56 E-value=1.4e-15 Score=137.12 Aligned_cols=64 Identities=27% Similarity=0.398 Sum_probs=59.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
...+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+....
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHH
Confidence 3567889999999999999999999999999999999999 999999999999999999986543
No 18
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.56 E-value=7.3e-16 Score=131.10 Aligned_cols=61 Identities=28% Similarity=0.406 Sum_probs=57.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
.+++|++||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhcc
Confidence 57889999999999999999999999999999999999 99999999999999999998543
No 19
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.56 E-value=5.6e-16 Score=131.64 Aligned_cols=62 Identities=24% Similarity=0.513 Sum_probs=58.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
..+++|+.||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhh
Confidence 457889999999999999999999999999999999999 99999999999999999998654
No 20
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.55 E-value=8.2e-16 Score=135.19 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=56.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhc----CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSE----CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~----~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
+..+|+|+.||.+|+..||..|+. ++||+..+|.+||.+| ||+++||||||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 356788999999999999999999 9999999999999999 99999999999999999764
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=8.4e-16 Score=131.06 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=58.5
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
...+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhc
Confidence 4567889999999999999999999999999999999999 9999999999999999999854
No 22
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.55 E-value=1.2e-15 Score=129.60 Aligned_cols=61 Identities=30% Similarity=0.511 Sum_probs=57.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
.+++|++||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhh
Confidence 57889999999999999999999999999999999999 99999999999999999998554
No 23
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.55 E-value=1.2e-15 Score=126.35 Aligned_cols=58 Identities=33% Similarity=0.506 Sum_probs=55.1
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 88 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krr 88 (836)
+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 5788999999999999999999999999999999999 999999999999999999874
No 24
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1e-15 Score=130.74 Aligned_cols=62 Identities=24% Similarity=0.400 Sum_probs=58.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccC
Confidence 4567889999999999999999999999999999999999 9999999999999999998743
No 25
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=8.9e-16 Score=135.34 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=58.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
...+++|+.||.+|+..||..|..++||+..+|.+||..| ||+++||++||||||+|+|+.+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999999 9999999999999999999754
No 26
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.54 E-value=2.1e-15 Score=128.20 Aligned_cols=61 Identities=25% Similarity=0.431 Sum_probs=57.5
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
.+++|+.||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999 99999999999999999998554
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.54 E-value=2.3e-15 Score=132.07 Aligned_cols=63 Identities=29% Similarity=0.582 Sum_probs=58.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 4567889999999999999999999999999999999999 99999999999999999998653
No 28
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.53 E-value=1.5e-15 Score=133.42 Aligned_cols=63 Identities=29% Similarity=0.418 Sum_probs=54.3
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
.+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhc
Confidence 34567889999999999999999999999999999999999 9999999999999999999854
No 29
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.53 E-value=1.4e-15 Score=125.99 Aligned_cols=57 Identities=30% Similarity=0.589 Sum_probs=50.6
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 29 KYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 29 kR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhc
Confidence 57899999999999999999999999999999999 9999999999999999998854
No 30
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.53 E-value=1.9e-15 Score=134.71 Aligned_cols=63 Identities=27% Similarity=0.395 Sum_probs=55.1
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
.+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 34567889999999999999999999999999999999999 9999999999999999999753
No 31
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=3.2e-15 Score=128.78 Aligned_cols=61 Identities=20% Similarity=0.286 Sum_probs=56.8
Q ss_pred CCCCcccCCHHHHHHHHHhHh-cCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYS-ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~-~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
.+++|++||.+|+..||..|. .++||+..+|.+||.++ ||+++||++||||||+|+|+++.
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhcc
Confidence 357789999999999999999 49999999999999999 99999999999999999998653
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.53 E-value=2.4e-15 Score=129.59 Aligned_cols=61 Identities=33% Similarity=0.519 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
..+++|++||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHh
Confidence 457889999999999999999999999999999999999 9999999999999999999743
No 33
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=3.4e-15 Score=128.14 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=55.9
Q ss_pred CCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSE-CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~-~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
.++|++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhc
Confidence 467889999999999999996 9999999999999999 9999999999999999999865
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.53 E-value=2.4e-15 Score=123.11 Aligned_cols=56 Identities=34% Similarity=0.509 Sum_probs=53.8
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 86 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~K 86 (836)
+++|++||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 5778999999999999999999999999999999999 9999999999999999975
No 35
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.53 E-value=1.2e-15 Score=128.81 Aligned_cols=59 Identities=32% Similarity=0.735 Sum_probs=56.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 88 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krr 88 (836)
.+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHH
Confidence 46889999999999999999999999999999999999 999999999999999998874
No 36
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2e-15 Score=132.14 Aligned_cols=62 Identities=11% Similarity=0.247 Sum_probs=58.3
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcC----CCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSEC----PKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~----~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
+..+++|+.||.+|+..||..|..+ +||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhcc
Confidence 4567889999999999999999999 999999999999999 9999999999999999999854
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.52 E-value=2e-15 Score=127.69 Aligned_cols=60 Identities=30% Similarity=0.487 Sum_probs=57.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
+++|++||++|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhch
Confidence 6789999999999999999999999999999999999 99999999999999999998544
No 38
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.52 E-value=1.7e-15 Score=133.32 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=55.0
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhc-----CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSE-----CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~-----~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
...+|+|+.||.+|++.|| .|.+ ++||+...|.+||.+| ||+++||||||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 3567889999999999999 7999 9999999999999999 99999999999999999764
No 39
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.52 E-value=3.2e-15 Score=122.38 Aligned_cols=54 Identities=30% Similarity=0.483 Sum_probs=50.8
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHH
Q 003250 31 VRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 88 (836)
Q Consensus 31 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krr 88 (836)
+.||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999 999999999999999999984
No 40
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.3e-15 Score=129.48 Aligned_cols=60 Identities=27% Similarity=0.479 Sum_probs=56.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhh
Confidence 4667889999999999999999999999999999999 99999999999999999998553
No 41
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.52 E-value=3.1e-15 Score=128.86 Aligned_cols=64 Identities=28% Similarity=0.541 Sum_probs=59.2
Q ss_pred cCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 23 HQLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 23 ~~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
.+..+++|++||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|++..
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999999 99999999999999999998543
No 42
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=4.4e-15 Score=129.37 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=54.4
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 28 GKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 28 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
.+|.+||.+|+.+||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHH
Confidence 456689999999999999999999999999999999 9999999999999999999743
No 43
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.51 E-value=2.7e-15 Score=124.51 Aligned_cols=58 Identities=26% Similarity=0.490 Sum_probs=48.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 86 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~K 86 (836)
..+++|++||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 457889999999999999999999999999999999999 9999999999999999875
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=5.4e-15 Score=134.10 Aligned_cols=63 Identities=29% Similarity=0.497 Sum_probs=55.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
+..+++|+.||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+++.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhc
Confidence 4567889999999999999999999999999999999999 99999999999999999998654
No 45
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=5.4e-15 Score=132.59 Aligned_cols=61 Identities=18% Similarity=0.358 Sum_probs=56.1
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~ 91 (836)
.+++.+||.+|+.+||..|..++||+..+|.+||..| ||+++||++||||||+|||++.+.
T Consensus 12 p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 12 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSC
T ss_pred chhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHH
Confidence 3456699999999999999999999999999999999 999999999999999999985543
No 46
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.49 E-value=5.8e-15 Score=127.17 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=57.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
.++.|+.||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCc
Confidence 36778999999999999999999999999999999999 99999999999999999998554
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=1.2e-14 Score=131.41 Aligned_cols=63 Identities=24% Similarity=0.512 Sum_probs=59.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccC---------------CCccceeeccccchhHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSN---------------IEPKQIKVWFQNRRCREKQR 88 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~g---------------L~~rQVKvWFQNRRaK~Krr 88 (836)
...+|+|+.||++|+..||..|+.++||+..+|.+||.+| | |++.||++||||||+|+|++
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999 9 99999999999999999986
Q ss_pred HH
Q 003250 89 KE 90 (836)
Q Consensus 89 qe 90 (836)
+.
T Consensus 81 ~~ 82 (95)
T 2cuf_A 81 AN 82 (95)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 48
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.3e-15 Score=128.32 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=56.6
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
.++.|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhcc
Confidence 34568899999999999999999999999999999999 99999999999999999988543
No 49
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.47 E-value=8e-15 Score=132.82 Aligned_cols=61 Identities=25% Similarity=0.384 Sum_probs=55.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
..+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 456889999999999999999999999999999999999 9999999999999999999854
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.46 E-value=1.5e-14 Score=124.36 Aligned_cols=60 Identities=27% Similarity=0.510 Sum_probs=56.7
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 27 NGKYVRYTAEQVEALERVY---SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
+++|++||.+|+..||..| ..++||+..+|.+||..+ ||+++||++||||||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcccccc
Confidence 6789999999999999999 899999999999999999 99999999999999999998544
No 51
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=2.7e-14 Score=122.77 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=57.5
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
+..+++|++||.+|+..||..|.+ ++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccc
Confidence 356788999999999999999987 9999999999999999 9999999999999999999854
No 52
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.45 E-value=1.8e-14 Score=119.17 Aligned_cols=55 Identities=31% Similarity=0.497 Sum_probs=52.9
Q ss_pred CcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 29 KYVRYTAEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 29 kR~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
++++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHccccc
Confidence 4679999999999999999 9999999999999999 99999999999999999886
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.45 E-value=3.1e-14 Score=126.30 Aligned_cols=60 Identities=27% Similarity=0.510 Sum_probs=56.2
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 27 NGKYVRYTAEQVEALERVY---SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
||+|++||.+|+..||..| ..++||+..+|.+||.++ ||+++||++||||||+|+|++..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhccc
Confidence 6789999999999999999 899999999999999999 99999999999999999998543
No 54
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.44 E-value=9.5e-15 Score=125.94 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=54.0
Q ss_pred CCCcccCCHHHHHHHHHhH-hcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 27 NGKYVRYTAEQVEALERVY-SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F-~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
.+++.+++.+|+..||..| ..++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCC
Confidence 4667789999999999999 999999999999999999 99999999999999999986
No 55
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.6e-14 Score=127.01 Aligned_cols=60 Identities=23% Similarity=0.390 Sum_probs=55.3
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
..++.++|.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++.
T Consensus 14 p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 14 PQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhH
Confidence 4566779999999999999999999999999999999 99999999999999999987543
No 56
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.2e-14 Score=121.72 Aligned_cols=58 Identities=26% Similarity=0.475 Sum_probs=54.9
Q ss_pred CCCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 26 DNGKYVRYTAEQVEALERVY---SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
.+++|++||.+|+..||..| ..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 35788999999999999999 899999999999999999 99999999999999999875
No 57
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.41 E-value=2.5e-14 Score=139.00 Aligned_cols=61 Identities=34% Similarity=0.532 Sum_probs=55.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 88 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krr 88 (836)
+..+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 3567889999999999999999999999999999999999 999999999999999999874
No 58
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.40 E-value=3e-14 Score=122.05 Aligned_cols=56 Identities=32% Similarity=0.520 Sum_probs=52.6
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 31 VRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 31 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
..+|..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhh
Confidence 368999999999999999999999999999999 99999999999999999988553
No 59
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.40 E-value=6.2e-14 Score=118.72 Aligned_cols=53 Identities=25% Similarity=0.408 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 33 YTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 33 ~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
-|.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 4789999999999999999999999999999 9999999999999999999743
No 60
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.40 E-value=7.2e-14 Score=124.18 Aligned_cols=58 Identities=29% Similarity=0.438 Sum_probs=55.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 86 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~K 86 (836)
..+++|++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcc
Confidence 45677899999999999999999 9999999999999999 9999999999999999987
No 61
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.40 E-value=6.2e-14 Score=123.73 Aligned_cols=59 Identities=27% Similarity=0.412 Sum_probs=54.2
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 27 NGKYVRYTAEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 27 rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
++++++||.+|+..||..|.. ++||+..+|.+||..+ ||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHH----CCCHHHcccccHHHHccccccc
Confidence 456778999999999999999 9999999999999999 9999999999999999998743
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.40 E-value=4.4e-14 Score=139.19 Aligned_cols=60 Identities=32% Similarity=0.444 Sum_probs=54.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 88 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krr 88 (836)
..||+|+.||..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 567889999999999999999999999999999999999 999999999999999999874
No 63
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=122.00 Aligned_cols=61 Identities=26% Similarity=0.257 Sum_probs=56.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 25 LDNGKYVRYTAEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 25 ~~rrkR~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
..+++|++||.+|+..||..|.+ +|||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHH
Confidence 55788899999999999999988 5999999999999999 9999999999999999988743
No 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.39 E-value=3.5e-14 Score=129.70 Aligned_cols=64 Identities=22% Similarity=0.387 Sum_probs=53.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHh------------------CCcccC---CCccceeeccccch
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRE------------------CPILSN---IEPKQIKVWFQNRR 82 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~------------------L~~~~g---L~~rQVKvWFQNRR 82 (836)
...+|+|+.||+.|+..||..|..++||+...|.+||.. | | |++.||++||||||
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~l----g~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGL----GSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTT----GGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccccccccccccccc----CccccCcceeeeccHHHH
Confidence 456788999999999999999999999999999999999 7 8 99999999999999
Q ss_pred hHHHHHHHH
Q 003250 83 CREKQRKEA 91 (836)
Q Consensus 83 aK~Krrqe~ 91 (836)
+++|++++.
T Consensus 83 ~k~k~k~~~ 91 (99)
T 1lfb_A 83 KEEAFRHKL 91 (99)
T ss_dssp HTTSCCC--
T ss_pred HHHHHhchh
Confidence 998876643
No 65
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=1.4e-13 Score=116.75 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=54.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSE-CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCRE 85 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~-~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~ 85 (836)
.+.||.|+.||.+|+..|+..|+. ++||+...|++||+++ ||++++|++||||||--.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHhhccceeee
Confidence 466899999999999999999999 9999999999999999 999999999999999653
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.38 E-value=5.6e-14 Score=139.14 Aligned_cols=63 Identities=30% Similarity=0.467 Sum_probs=52.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 90 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe 90 (836)
+..||+|++||..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+.
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhccC
Confidence 3567889999999999999999999999999999999999 99999999999999999998554
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=125.14 Aligned_cols=68 Identities=22% Similarity=0.397 Sum_probs=59.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCC-------------ccc----CCCccceeeccccchhHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECP-------------ILS----NIEPKQIKVWFQNRRCREK 86 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~-------------~~~----gL~~rQVKvWFQNRRaK~K 86 (836)
+..||+|+.||+.|+.+||..|..++||+..+|++||.+|- .+. ++++.+|++||||||+|+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 45688899999999999999999999999999999999980 001 4889999999999999999
Q ss_pred HHHHH
Q 003250 87 QRKEA 91 (836)
Q Consensus 87 rrqe~ 91 (836)
++++.
T Consensus 84 r~~~~ 88 (102)
T 2da6_A 84 FRQKL 88 (102)
T ss_dssp HHHHH
T ss_pred HhhHh
Confidence 87654
No 68
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.37 E-value=1.4e-13 Score=134.19 Aligned_cols=60 Identities=25% Similarity=0.510 Sum_probs=56.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
+..||+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 3567889999999999999999999999999999999999 99999999999999999885
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-13 Score=116.67 Aligned_cols=54 Identities=15% Similarity=0.240 Sum_probs=50.1
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 30 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 30 R~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
+..++.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 3466799999999999999999999999999999 99999999999999998654
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.35 E-value=2.1e-13 Score=133.69 Aligned_cols=60 Identities=27% Similarity=0.451 Sum_probs=57.1
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
+..+|+|++||..|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHc----CCChhheeeccccccccccC
Confidence 3567889999999999999999999999999999999999 99999999999999999987
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.34 E-value=9.2e-14 Score=117.33 Aligned_cols=49 Identities=29% Similarity=0.537 Sum_probs=46.1
Q ss_pred HHHHHHHHHhH-hcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHH
Q 003250 35 AEQVEALERVY-SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 87 (836)
Q Consensus 35 ~~Ql~~LE~~F-~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Kr 87 (836)
+.|+.+||+.| ..++||+..+|.+||++| ||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCC
Confidence 56899999999 679999999999999999 99999999999999999875
No 72
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.30 E-value=2.6e-12 Score=133.56 Aligned_cols=178 Identities=20% Similarity=0.248 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeeccCCCcccccceeeEEEeChhHHH-HHhcCccchhhhCCCceE
Q 003250 167 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIA-EILKDRPSWFRDCRSLEV 245 (836)
Q Consensus 167 lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LV-e~lmD~~~W~~~f~~~~~ 245 (836)
++++++.|+++.+.....-|-.... +.|-.++.. ....+...-.-|..++|...+.+++ ++|.|+.+|-..|...++
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~-~~gi~V~~k-~~~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~Wd~~~~~~~v 110 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSS-TDNTDLAFK-KVGDGNPLKLWKASVEVEAPPSVVLNRVLRERHLWDEDFVQWKV 110 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECC-SSSCEEEEE-CCCSSCCCCEEEEEEEESSCHHHHHHHHHHCGGGTCTTBCCCEE
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEec-CCCeEEEEE-EcCCCCCcEEEEEEEEEcCChHHHHHHHHhhhhhHHhhhceEEE
Confidence 4467777888777644556977532 122221111 1123333445688888887777764 789999999999999999
Q ss_pred eeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeee-ccCCcEEEEEeecCCCCCCCCCCCcccccceeecCcceeE
Q 003250 246 FTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTT-LDNGSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLI 324 (836)
Q Consensus 246 l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclI 324 (836)
|+.+.... .++|..+..|.| +++|||.++||.++ +++|.++||-.|++. +..|+. .++|+..+++|++|
T Consensus 111 le~id~~~----~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h----~~~P~~-g~VR~~~~~~g~~i 180 (237)
T 2pso_A 111 VETLDRQT----EIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEH----EEAQLL-GGVRAVVMDSQYLI 180 (237)
T ss_dssp EEEEETTE----EEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCC----TTCCCC-SSEECCEEEEEEEE
T ss_pred EEEcCCCc----EEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccC----CCCCCC-CcEEEEEeccEEEE
Confidence 99987421 345666665655 79999999999985 789999999999984 334555 89999999999999
Q ss_pred eecCCCccEEEEEEeeecccccccccccccccc
Q 003250 325 RPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYES 357 (836)
Q Consensus 325 q~~~nG~skVtwVeH~e~d~~~vh~lyrpL~~S 357 (836)
+|+++|.|+|||+-|++.. ..+|.-+..++.+
T Consensus 181 ~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~~~ 212 (237)
T 2pso_A 181 EPCGSGKSRLTHICRIDLK-GHSPEWYSKGFGH 212 (237)
T ss_dssp EECSTTCEEEEEEEEECCS-SSCTTTTTTHHHH
T ss_pred EECCCCCEEEEEEEEeCCC-CCchHHHHHHHHH
Confidence 9999999999999999987 5678765444433
No 73
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.28 E-value=3.8e-13 Score=132.69 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=54.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
...||+|+.||.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccC
Confidence 3567889999999999999999999999999999999999 9999999999999999988743
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.23 E-value=2.4e-12 Score=109.38 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHhHh---cCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 32 RYTAEQVEALERVYS---ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 32 r~T~~Ql~~LE~~F~---~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
+||.+|+..||..|. .+|||+..+|.+||..+ ||+++||++||||||+|+|+..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHH
Confidence 799999999999999 99999999999999999 9999999999999999998743
No 75
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.15 E-value=9.5e-11 Score=119.66 Aligned_cols=171 Identities=19% Similarity=0.274 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeeccCCCcccccceeeEEEeChhHHHHHhc-C---ccchhhh
Q 003250 164 LLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILK-D---RPSWFRD 239 (836)
Q Consensus 164 l~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LVe~lm-D---~~~W~~~ 239 (836)
...+|++||++++.+... +.-|-.....+.|-..+... . .+. +-.=|..++|...+.+|.+.|+ | +.+|-..
T Consensus 12 y~~~~~~~~~~~l~~~~~-~~gW~~~~~~~~gv~vy~~~-~-~~~-g~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~~ 87 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILSN-QEGWKKESQQDNGDKVMSKV-V-PDV-GKVFRLEVVVDQPMERLYEELVERMEAMGEWNPN 87 (221)
T ss_dssp HHHHHHHHHHHHHHHHHS-CTTCEEEEECTTSCEEEEEE-C-SSS-CEEEEEEEEESSCHHHHHHHHTTTGGGTTTSCTT
T ss_pred HHHHHHHHHHHHHHHHhC-CCCCeEeeecCCCcEEEEEE-c-CCC-ceEEEEEEEEcCCHHHHHHHHHhccchhhhcCcc
Confidence 468999999999999863 45698752112232222111 1 122 3456999999999999999984 5 6789999
Q ss_pred CCCceEeeeecCCCccHHHHHHHhh-hccccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccceeec
Q 003250 240 CRSLEVFTMFPAGNAGTIELLYTQA-YAPTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEML 318 (836)
Q Consensus 240 f~~~~~l~~~~~g~~GalqLm~aE~-~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rl 318 (836)
|...++|+.+..+ + .+.|... ..+.+++++|||.++||.++. +|.++|+-.|++. +..|+...|+|+..+
T Consensus 88 ~~~~~vle~~~~~---t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~g~VR~~~~ 158 (221)
T 3p0l_A 88 VKEIKVLQKIGKD---T-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDF----GNMPEQKGVIRAEHG 158 (221)
T ss_dssp CSEEEEEEECSSS---E-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCC----TTSCCCTTSEECEEC
T ss_pred hheEEEEEecCCC---e-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccC----CCCCCCCCeEEEecc
Confidence 9999999988753 2 2333221 123468999999999999985 6899999999873 344556689999999
Q ss_pred CcceeEeecCCC--ccEEEEEEeeeccccccc
Q 003250 319 PSGCLIRPCDGG--GSIIHIVDHLNLEAWSVP 348 (836)
Q Consensus 319 PSGclIq~~~nG--~skVtwVeH~e~d~~~vh 348 (836)
++|++|+++++| .|+|||+-|+|..-+ +|
T Consensus 159 ~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP 189 (221)
T 3p0l_A 159 PTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP 189 (221)
T ss_dssp SCEEEEEEETTEEEEEEEEEEECEECCSS-CC
T ss_pred ceEEEEEECCCCCCcEEEEEEEEecCCCC-CC
Confidence 999999999988 999999999998766 55
No 76
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.12 E-value=1.1e-10 Score=119.65 Aligned_cols=179 Identities=13% Similarity=0.144 Sum_probs=128.9
Q ss_pred hchHHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeeccCCCcccccceeeEEEeChhHHH-HHhcC---ccchh
Q 003250 162 AGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIA-EILKD---RPSWF 237 (836)
Q Consensus 162 ~~l~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~~~~~~~eASR~~glV~m~~~~LV-e~lmD---~~~W~ 237 (836)
...+.++++|+++++.+... .--|-.....+.|-.++... . .+ .+-.-|..++|...+..|. ++|+| +.+|-
T Consensus 21 ~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~vy~~~-~-~~-~g~~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd 96 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDTVYTIE-V-PF-HGKTFILKTFLPCPAELVYQEVILQPERMVLWN 96 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCEEEEEE-E-TT-TEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCEEEEEe-c-CC-CCceEEEEEEecCCHHHHHHHHHhCccchhhcc
Confidence 35578999999999999863 34697652211222222111 0 11 1123489999999999998 66644 66888
Q ss_pred hhCCCceEeeeecCCCccHHHHHHHhhhcc--ccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccce
Q 003250 238 RDCRSLEVFTMFPAGNAGTIELLYTQAYAP--TTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRA 315 (836)
Q Consensus 238 ~~f~~~~~l~~~~~g~~GalqLm~aE~~v~--SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~ 315 (836)
..|...++|..+..+.. ++-++..+ .+++++|||.++|+++.. ++.++||-.|++. +..|+...++|+
T Consensus 97 ~~~~~~~vle~~~~~t~-----I~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~~~VR~ 166 (229)
T 1em2_A 97 KTVTACQILQRVEDNTL-----ISYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIATSH----SAKPPTHKYVRG 166 (229)
T ss_dssp TTEEEEEEEEEETTTEE-----EEEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEECCC----TTSCCCTTSEEC
T ss_pred cccceEEEEEecCCCeE-----EEEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecccC----CCCCCCCCCEee
Confidence 88888899998875421 24445554 578999999999999997 5669999999974 445566689999
Q ss_pred eecCcceeEeecC--CCccEEEEEEeeecccccccccccccccch
Q 003250 316 EMLPSGCLIRPCD--GGGSIIHIVDHLNLEAWSVPEVLRPLYESS 358 (836)
Q Consensus 316 ~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpL~~Sg 358 (836)
..+++|++|++++ +|.|+|||+-|++..-+ +| +.++++.
T Consensus 167 ~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~ 207 (229)
T 1em2_A 167 ENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQS 207 (229)
T ss_dssp EECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHH
T ss_pred eecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHH
Confidence 9999999999987 67899999999987765 65 3455443
No 77
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.08 E-value=6.9e-12 Score=127.26 Aligned_cols=60 Identities=25% Similarity=0.474 Sum_probs=53.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccC---------------------CCccceeeccccch
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSN---------------------IEPKQIKVWFQNRR 82 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~g---------------------L~~rQVKvWFQNRR 82 (836)
+..||+|+.||+.|+..||..|..++||+...|.+||..| | |++.||++||||||
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR 188 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 188 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CchhhccccccccccccccccccCccccchhchhhh
Confidence 4567889999999999999999999999999999999999 9 99999999999999
Q ss_pred hHHHH
Q 003250 83 CREKQ 87 (836)
Q Consensus 83 aK~Kr 87 (836)
+|+|.
T Consensus 189 ~~~k~ 193 (194)
T 1ic8_A 189 KEEAF 193 (194)
T ss_dssp HHCC-
T ss_pred hhhhc
Confidence 98765
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.97 E-value=2e-10 Score=102.82 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=51.3
Q ss_pred ccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHH
Q 003250 31 VRYTAEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 89 (836)
Q Consensus 31 ~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrq 89 (836)
+-|+.+++..|+..|.+ +|||+..+|.+||+++ ||+++||++||||||.|.|+..
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHH
Confidence 56899999999999988 8999999999999999 9999999999999999988743
No 79
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1.9e-10 Score=98.21 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=44.2
Q ss_pred HHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhH
Q 003250 35 AEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 84 (836)
Q Consensus 35 ~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK 84 (836)
.+|+..||..|..+++|+..++.+||..+ ||+.++||+||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 57899999999999999999999999999 99999999999999974
No 80
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.92 E-value=9.2e-10 Score=116.25 Aligned_cols=125 Identities=20% Similarity=0.286 Sum_probs=102.6
Q ss_pred cceeeEEEeChhHHHHHhcCc---cchhhhCCCceEeeeecCCCccHHHHHHHhhhcccc--ccCCceeeEEeeeee-cc
Q 003250 213 ARACGLVSLEPTKIAEILKDR---PSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTT--LAPARDFWTLRYTTT-LD 286 (836)
Q Consensus 213 SR~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SP--LVp~Re~~fLRyckq-~~ 286 (836)
=|..++|...+..|.+.|+|. .+|-..+...++|+.+... .++| ++..|+| ++++|||..|||.+. ..
T Consensus 90 ~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~-----~ivY-~~~~p~~~~~v~~RDFV~lr~~r~~~~ 163 (258)
T 3fo5_A 90 FHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDED-----DAIY-HVTSPALGGHTKPQDFVILASRRKPCD 163 (258)
T ss_dssp EEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETT-----EEEE-EEEECCCTTCSSCEEEEEEEEEECCSS
T ss_pred EEEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCC-----eEEE-EEecCCccCCCCCCEEEEEEEEEeccC
Confidence 388899999999999999886 4677778888888887754 2466 6667775 799999999999987 45
Q ss_pred CCc-EEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecccccccc
Q 003250 287 NGS-LVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 287 ~G~-waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 349 (836)
+|. ++|+-+|++. +..|+...|+|++.+|+||+|+++++|.|+||++-|++- ..+|.
T Consensus 164 ~G~~yvi~~~SV~h----p~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~ 221 (258)
T 3fo5_A 164 NGDPYVIALRSVTL----PTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNY 221 (258)
T ss_dssp TTCCEEEEEEEEEC----TTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHH
T ss_pred CCCEEEEEEEeccC----CCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCc
Confidence 775 9999999983 445667789999999999999999999999999999873 44443
No 81
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.90 E-value=2.9e-10 Score=117.03 Aligned_cols=58 Identities=26% Similarity=0.497 Sum_probs=52.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccC---------------------CCccceeeccccch
Q 003250 24 QLDNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSN---------------------IEPKQIKVWFQNRR 82 (836)
Q Consensus 24 ~~~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~g---------------------L~~rQVKvWFQNRR 82 (836)
...||.|+.|++.|+.+||..|..++||+..+|++||..+ | |++.||++||||||
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~----n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC----NRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----HHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----ChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 3567888899999999999999999999999999999998 6 88999999999999
Q ss_pred hHH
Q 003250 83 CRE 85 (836)
Q Consensus 83 aK~ 85 (836)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 763
No 82
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.84 E-value=3.5e-10 Score=123.91 Aligned_cols=57 Identities=26% Similarity=0.545 Sum_probs=53.1
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHH
Q 003250 26 DNGKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 86 (836)
Q Consensus 26 ~rrkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~K 86 (836)
+++.+..++.+|+..||+.|+.++||+..+|.+||+++ ||+++|||+||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 35567789999999999999999999999999999999 9999999999999999865
No 83
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.81 E-value=2.8e-09 Score=107.40 Aligned_cols=127 Identities=24% Similarity=0.325 Sum_probs=105.8
Q ss_pred cccceeeEEE-eChhHHHHHhcC---ccchhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeecc
Q 003250 211 VAARACGLVS-LEPTKIAEILKD---RPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLD 286 (836)
Q Consensus 211 eASR~~glV~-m~~~~LVe~lmD---~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~ 286 (836)
-.-|..++|. ..+.++.+.|+| +.+|...+...++|+. .| . .++|.++..|.|+ ..|||.++|+++.++
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~--~~--~--~i~~~~~~~p~p~-~~RD~v~~~~~~~~~ 124 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQEC--NG--E--TVVYWEVKYPFPM-SNRDYVYLRQRRDLD 124 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEE--TT--E--EEEEEEECCCTTS-CCEEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEecc--CC--C--EEEEEEEEcCCCC-CCceEEEEEEEEecc
Confidence 4569999994 999999999999 7889888888888765 23 2 2678888888886 999999999999875
Q ss_pred -CC--cEEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecccccccc
Q 003250 287 -NG--SLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 287 -~G--~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 349 (836)
+| .|+|+-.|++. +..|+...++|.+.+++|++|++.++|.|+||++-|++.. ..+|.
T Consensus 125 ~~g~~~~~i~~~Sv~~----p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~ 185 (214)
T 1ln1_A 125 MEGRKIHVILARSTSM----PQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPS 185 (214)
T ss_dssp STTCCEEEEEEEECCB----TTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCH
T ss_pred cCCCeEEEEEEecccC----CCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccH
Confidence 66 49999999974 3345556899999999999999999999999999999987 55664
No 84
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.65 E-value=1.6e-07 Score=96.04 Aligned_cols=166 Identities=20% Similarity=0.343 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEecCCCCCCCCccceeec-cCCCcccccceeeEEEeChhHHHHHhcCcc---chhhh
Q 003250 164 LLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAI-SQSCSGVAARACGLVSLEPTKIAEILKDRP---SWFRD 239 (836)
Q Consensus 164 l~~lA~~am~Ell~~a~~~~plWi~~~~~~~g~~~~~~~~~-~~~~~~eASR~~glV~m~~~~LVe~lmD~~---~W~~~ 239 (836)
+.+.+.++|..+..+ .+.-|-.... +.| +.++-. ..+..+-.-|..++|...+..|.+.|+|.. +|-..
T Consensus 26 ~~~~~~e~l~~~~~~---~~~~W~~~~~-~~g---v~vy~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~ 98 (224)
T 1jss_A 26 ISTKLQNTLIQYHSI---EEDEWRVAKK-AKD---VTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDRL 98 (224)
T ss_dssp HHHHHHHHHHHHTTS---CGGGCEEEEE-ETT---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCSS
T ss_pred HHHHHHHHHHHHhhh---CCCCCEEEEE-CCC---EEEEEEeccCCCceEEEEEEEEeCCHHHHHHHHhCcccccccccc
Confidence 455555555554443 3556876421 112 222211 123334456999999999999999999965 88888
Q ss_pred CCCceEeeeecCCCccHHHHHHHhhhc-cccccCCceeeEEeeeeeccCCcEEEEEeecCCCCCCCCCCCcccccceeec
Q 003250 240 CRSLEVFTMFPAGNAGTIELLYTQAYA-PTTLAPARDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNPASAAQFVRAEML 318 (836)
Q Consensus 240 f~~~~~l~~~~~g~~GalqLm~aE~~v-~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~~rl 318 (836)
|-..++|+.+.... .+.|.-+.- +-|++.+|||.++|+.+..++| ++|+-+|++.. ..+ +.++|++.+
T Consensus 99 ~~~~~vle~id~~~----~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp----~~~--~g~VR~~~~ 167 (224)
T 1jss_A 99 MTSLDVLEHFEENC----CVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS----ETR--PEFVRGYNH 167 (224)
T ss_dssp EEEEEEEEECSTTE----EEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC----CCC--TTSEECEEC
T ss_pred eeeEEEEEEcCCCe----EEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC----CCC--CCCEEEEec
Confidence 88888888775321 223333332 2357999999999999998777 78899998842 222 378999999
Q ss_pred CcceeEeecCCC--ccEEEEEEeeeccccccc
Q 003250 319 PSGCLIRPCDGG--GSIIHIVDHLNLEAWSVP 348 (836)
Q Consensus 319 PSGclIq~~~nG--~skVtwVeH~e~d~~~vh 348 (836)
++|++|++.++| .|+|||+-|+|..-+ +|
T Consensus 168 ~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP 198 (224)
T 1jss_A 168 PCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP 198 (224)
T ss_dssp SEEEEEEEETTEEEEEEEEEEECEECCSC-CC
T ss_pred ccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc
Confidence 999999999875 899999999997754 44
No 85
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.26 E-value=9.4e-08 Score=72.19 Aligned_cols=20 Identities=55% Similarity=0.896 Sum_probs=17.8
Q ss_pred cceeeccccchhHHHHHHHH
Q 003250 72 KQIKVWFQNRRCREKQRKEA 91 (836)
Q Consensus 72 rQVKvWFQNRRaK~Krrqe~ 91 (836)
+||+|||||||+|||+++.+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 69999999999999986655
No 86
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.23 E-value=2.2e-06 Score=89.11 Aligned_cols=177 Identities=15% Similarity=0.202 Sum_probs=118.8
Q ss_pred hchHHHHHHHHHHHHHHhcC---CCcceEecCCCCCCCCccceeeccCCCcccccceeeEEE-eChhHHHHHhcC---cc
Q 003250 162 AGLLSIAEETLAEFLSKATG---TAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVS-LEPTKIAEILKD---RP 234 (836)
Q Consensus 162 ~~l~~lA~~am~Ell~~a~~---~~plWi~~~~~~~g~~~~~~~~~~~~~~~eASR~~glV~-m~~~~LVe~lmD---~~ 234 (836)
..+.++++..+.|.+..+.. +..-|-.... +.|-..+.......|...-.=|..+.|. ..+..+.+.|+| +.
T Consensus 22 ~~~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~-~~gv~vy~~~~~~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~ 100 (255)
T 2e3n_A 22 HRFVQKVEEMVQNHMTYSLQDVGGDANWQLVVE-EGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRN 100 (255)
T ss_dssp CTTHHHHHHHHHHHHHHTTSCCTTCTTEEEEEE-ETTEEEEEECCEETTEECCCEEEEEEEETCCHHHHHHHHHCGGGHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEe-CCCEEEEEEEcCCCCceeeeEEEEEEEcCCCHHHHHHHHhCcchHh
Confidence 35677788888888888764 2456876521 1121111100000111101246666665 788999999999 56
Q ss_pred chhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeec----cC--CcEEEEEeecCCCCCCCCCCC
Q 003250 235 SWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTL----DN--GSLVVCERSLSGSGAGPNPAS 308 (836)
Q Consensus 235 ~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~----~~--G~waVvDvSld~~~~~~~~~~ 308 (836)
+|-..+...++|+.+..+ + .+.|..+..|.|+ ..|||.++|++++. ++ +.|+|+..|++.. ..|+
T Consensus 101 ~Wd~~~~~~~vle~i~~~--~--~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~----~~P~ 171 (255)
T 2e3n_A 101 DWETTIENFHVVETLADN--A--IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHD----SAPL 171 (255)
T ss_dssp HHCCSEEEEEEEEEEETT--E--EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCT----TSCC
T ss_pred hhhhhcceeEEEEEcCCC--C--EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEEEEeccCCC----CCCC
Confidence 788787788888887542 2 4667777788885 89999999999887 33 5999999999842 3445
Q ss_pred cccccceee---cCcceeEeecCC--------CccEEEEEEeeecccccccc
Q 003250 309 AAQFVRAEM---LPSGCLIRPCDG--------GGSIIHIVDHLNLEAWSVPE 349 (836)
Q Consensus 309 ~~~~~r~~r---lPSGclIq~~~n--------G~skVtwVeH~e~d~~~vh~ 349 (836)
...++|... +.+|++|++..+ +.|+||++-|++..- .+|.
T Consensus 172 ~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~ 222 (255)
T 2e3n_A 172 NNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPA 222 (255)
T ss_dssp CSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCH
T ss_pred CCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCH
Confidence 557899984 679999998733 579999999998763 4654
No 87
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.20 E-value=1.9e-06 Score=85.24 Aligned_cols=132 Identities=16% Similarity=0.163 Sum_probs=96.1
Q ss_pred cccceeeEEEeChhHHHHHhcCc---cchhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccC
Q 003250 211 VAARACGLVSLEPTKIAEILKDR---PSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDN 287 (836)
Q Consensus 211 eASR~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~ 287 (836)
-.=|..++|...+.++.+.|+|. ++|...|...++|+. . ++. .++|.++..|-| +..|||.++|+....++
T Consensus 27 ~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~-~---~~~-~i~y~~~~~p~p-~~~RD~v~~~~~~~~~~ 100 (189)
T 3qsz_A 27 REFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKA-T---DTE-QYHYLDNSAPWP-VSNRDGVYHFTYEKAGD 100 (189)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEE-C---SSE-EEEEEEECCSSS-CCCEEEEEEEEEEECTT
T ss_pred EEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEee-c---CCc-eEEEEEeecCCC-cCCcceEEEEEEEECCC
Confidence 35688999999999999999995 455555555667766 2 222 235666666655 79999999999999888
Q ss_pred CcEEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecccccccc-cccccc
Q 003250 288 GSLVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPE-VLRPLY 355 (836)
Q Consensus 288 G~waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~-lyrpL~ 355 (836)
|...|+=.+ + .+..|+...++|.+.+++|++|++ ++|.|+||++-|+|..- .+|. |.+...
T Consensus 101 g~~~i~~~~-~----~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~~lvn~~~ 162 (189)
T 3qsz_A 101 GAITVRVEA-V----PDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPSWLANQTV 162 (189)
T ss_dssp SCEEEEEEE-C----TTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCHHHHHHTT
T ss_pred CeEEEEEEc-C----CCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCHHHHHHHH
Confidence 876554333 2 133455568899999999999999 99999999999999763 4554 333333
No 88
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=97.27 E-value=0.0019 Score=56.25 Aligned_cols=105 Identities=10% Similarity=-0.047 Sum_probs=79.1
Q ss_pred cCCCceeccCCCC-CceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCe
Q 003250 726 QHSDAILCCSLKS-MPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRH 804 (836)
Q Consensus 726 ~~~~avl~h~~~~-dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grr 804 (836)
+.|++|+.++.+. +-.+.|+|.++.+||.++-+++.+.+...-..+..+......+.++...|-.....-......|+.
T Consensus 5 ~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~ 84 (128)
T 3t50_A 5 FTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEA 84 (128)
T ss_dssp CCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCCCE
Confidence 5677888877654 668999999999999999999999998766666555666666666666665433334456788998
Q ss_pred eEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 805 VSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 805 f~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
++++ ..+-.+.| ++|...|...++.+
T Consensus 85 ~~~~-~~~~~i~~-~~g~~~~~~~~~~D 110 (128)
T 3t50_A 85 FWNR-LHISPVHN-ANGRLQHFVSSQLD 110 (128)
T ss_dssp EEEE-EEEEEEEC-TTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEEEC-CCCCEEEEEEEEEE
Confidence 8885 45566778 88998888777765
No 89
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=97.21 E-value=0.0028 Score=53.29 Aligned_cols=105 Identities=9% Similarity=-0.003 Sum_probs=76.0
Q ss_pred cCCCceeccCCC-CCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCe
Q 003250 726 QHSDAILCCSLK-SMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRH 804 (836)
Q Consensus 726 ~~~~avl~h~~~-~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grr 804 (836)
+.|++|+..+.+ ++-.+.|+|.++.+||.++-+++.+.+...-..+..+......+.++.+.|-.....-....+.|+.
T Consensus 5 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 84 (115)
T 4eet_B 5 FIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKK 84 (115)
T ss_dssp CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCCCCE
Confidence 467777776652 2678999999999999999999999997766655555555566666666554333233345788998
Q ss_pred eEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 805 VSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 805 f~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
++++ ..+-.+.| ++|...|...++.+
T Consensus 85 ~~~~-~~~~~~~~-~~g~~~~~~~~~~D 110 (115)
T 4eet_B 85 FWNL-LHLQPVRD-QKGELQYFIGVQLD 110 (115)
T ss_dssp EEEE-EEEEEEEC-TTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEEEC-CCCCEEEEEEEEEe
Confidence 8885 46667788 88998888777765
No 90
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=97.02 E-value=0.0051 Score=56.04 Aligned_cols=110 Identities=6% Similarity=-0.052 Sum_probs=81.8
Q ss_pred HHhhcCCCceeccCCC-CCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcC
Q 003250 722 KNLWQHSDAILCCSLK-SMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMST 800 (836)
Q Consensus 722 ~~l~~~~~avl~h~~~-~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss 800 (836)
..+=+.+++|+.++.+ +|-.+.|+|.++.+||.++.+++.+.+...-..+..+......+.++...|-.....-....+
T Consensus 39 ~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 118 (166)
T 3ue6_A 39 KALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCLLNYRQ 118 (166)
T ss_dssp HHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred HHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEEEEEcC
Confidence 4445778888888763 367899999999999999999999999876666655555666666666666543333344678
Q ss_pred CCCeeEEcCeEEeEeecCCCCceEEEEEEecCc
Q 003250 801 MGRHVSYEQAVAWKVLAPEDNTVHCLAFSFINW 833 (836)
Q Consensus 801 ~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~W 833 (836)
.|+.++++ ..+-.+.| ++|...|...+|.+=
T Consensus 119 ~g~~~~~~-~~~~~i~~-~~g~~~~~~~~~~DI 149 (166)
T 3ue6_A 119 DGTTFWNL-FFVAGLRD-SKGNIVNYVGVQSKV 149 (166)
T ss_dssp TSCEEEEE-EEEEEEEC-TTSCEEEEEEECCBC
T ss_pred CCCEEEEE-EEEEeeeC-CCCCEEEEEEEEEec
Confidence 89999886 45556778 899998888887653
No 91
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=97.00 E-value=0.0088 Score=49.89 Aligned_cols=111 Identities=8% Similarity=-0.027 Sum_probs=82.0
Q ss_pred hHHHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeE
Q 003250 719 SVLKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGIC 797 (836)
Q Consensus 719 ~~~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvR 797 (836)
..++.++ +.+++|+..+. +-.+.|+|.++.++|+++-+++.+.+...-..+..+......+.++...|-.....-..
T Consensus 7 ~~~~~~~~~~~~~i~~~d~--~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T 3lyx_A 7 KQRAKAFDYVFDAIVVTDL--QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIRM 84 (124)
T ss_dssp HHHHHGGGTCSSEEEEEET--TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred HHHHHHHhhcCceEEEECC--CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEEE
Confidence 3445555 56777777764 55899999999999999999999999886666666666666777777777544433344
Q ss_pred EcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecCc
Q 003250 798 MSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFINW 833 (836)
Q Consensus 798 iss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~W 833 (836)
....|+.++++ ..+-.+.| ++|...|...++.+-
T Consensus 85 ~~~~g~~~~~~-~~~~~~~~-~~g~~~~~~~~~~Di 118 (124)
T 3lyx_A 85 LHKDGHIGWIE-SMCVPIYG-ENYQMVGALGINRDI 118 (124)
T ss_dssp ECTTSCEEEEE-EEEEEEEC-STTCEEEEEEEEEEC
T ss_pred EccCCCEEEEE-EEEEEEEC-CCCCEEEEEEEEecc
Confidence 56788888875 45667778 889998888777653
No 92
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=96.89 E-value=0.066 Score=54.32 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhH
Q 003250 382 PAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPAL 461 (836)
Q Consensus 382 ~~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~ 461 (836)
.+.+.++|+..+..|-.-+.. ..+|.... ..++|+|..+...+. ++-+ .++...+ ++||+.
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~--~~~gv~v~~~~~~~~------------~~~~--~k~~~~v-~~~~~~ 81 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRD--TAGWKICR--EGNGVSVSWRPSVEF------------PGNL--YRGEGIV-YGTLEE 81 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CSSCEEEE--CCSSEEEEEEECSSS------------SSEE--EEEEEEE-SSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCCEEEE--eCCCEEEEEEccCCC------------CCcE--EEEEEEE-CCCHHH
Confidence 358999999999988876643 47898775 356799988765311 1223 3555566 899999
Q ss_pred HHHHH--hh--hhhcccccccchhhhhhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCccccccc
Q 003250 462 LVRFL--RE--HRSEWADFNVDAYSAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFV 537 (836)
Q Consensus 462 lf~FL--Rd--~RseWd~l~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~ 537 (836)
||++| .| .|.+||..-. ...++..|. .... |++.-.. +.-..-+-
T Consensus 82 v~~~l~~~d~~~r~~Wd~~~~------------------------~~~vle~i~----~~~~--i~~~~~~-~~~~~~v~ 130 (231)
T 2r55_A 82 VWDCVKPAVGGLRVKWDENVT------------------------GFEIIQSIT----DTLC--VSRTSTP-SAAMKLIS 130 (231)
T ss_dssp HHHHHCC--CCSHHHHCTTCS------------------------EEEEEEECS----SSEE--EEEEECC-CBTTTTBC
T ss_pred HHHHHHhhCcchhhhhccccc------------------------eeEEEEEcC----CCEE--EEEEEec-cccCCccC
Confidence 99999 76 8999997411 123444442 1112 3332110 11011355
Q ss_pred CCceEEEeeecccCCCCCCceeEEEEeeccCCC----CCCC--cccCCccEEecC
Q 003250 538 SRDIHLLQICSGVDENAVGACSELVFAPIDEMF----PDDG--PLLPSGFRIIPL 586 (836)
Q Consensus 538 ~~~~liLQe~s~~De~~~Gs~s~vVyAPvD~~d----s~~v--~LLPSGF~I~P~ 586 (836)
+||..+|.-+ ..++ .|+ -.++.-.||-+. +.+| .++|+||.|-|+
T Consensus 131 ~RDfv~~r~~-~~~~--~g~-~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~ 181 (231)
T 2r55_A 131 PRDFVDLVLV-KRYE--DGT-ISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPL 181 (231)
T ss_dssp CEEEEEEEEE-EECT--TSC-EEEEEEECCCTTSCCCTTCEEEEECSEEEEEEEC
T ss_pred CCeEEEEEEE-EEcC--CCE-EEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEe
Confidence 7888888875 4553 353 234566677542 2333 478899999983
No 93
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=96.79 E-value=0.0079 Score=52.50 Aligned_cols=103 Identities=7% Similarity=-0.039 Sum_probs=68.4
Q ss_pred CCceeccCCC-CCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCeeE
Q 003250 728 SDAILCCSLK-SMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVS 806 (836)
Q Consensus 728 ~~avl~h~~~-~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf~ 806 (836)
+++|+-.+.. +|-.+.|+|.++.+|+.++-+|+.+-+.+.-..+....+..+.+.+.+++|=.....-....+.|+.|+
T Consensus 3 ~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~ 82 (109)
T 1n9l_A 3 RHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFW 82 (109)
T ss_dssp SCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEE
T ss_pred ccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEEE
Confidence 4556555543 467899999999999999999999987655433333333334444455544322222234578999999
Q ss_pred EcCeEEeEeecCCCCceEEEEEEecC
Q 003250 807 YEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 807 ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
++- .+=.+.| ++|...+...++.+
T Consensus 83 ~~~-~~~pi~d-~~G~~~~~v~~~~D 106 (109)
T 1n9l_A 83 NLL-TVTPIKT-PDGRVSKFVGVQVD 106 (109)
T ss_dssp EEE-EEEEEEC-TTSCEEEEEEEEEE
T ss_pred EEE-EEEEEEC-CCCCEEEEEEEEEe
Confidence 865 4556788 99998887776654
No 94
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=96.58 E-value=0.017 Score=50.57 Aligned_cols=108 Identities=11% Similarity=-0.027 Sum_probs=72.4
Q ss_pred hHHHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCe--
Q 003250 719 SVLKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAG-- 795 (836)
Q Consensus 719 ~~~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~G-- 795 (836)
..++.++ +.+++|+..+. +=.+.|.|+++.+|+.++-+|+.+.+...-..+..+......+.+.+.+|= .+.|
T Consensus 5 ~~~~~~~~~~~~~i~~~d~--~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~e~ 80 (120)
T 2gj3_A 5 EIFRQTVEHAPIAISITDL--KANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKK--PWSGVL 80 (120)
T ss_dssp HHHHHHHHHCSSEEEEECT--TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTC--CEEEEE
T ss_pred HHHHHHHHhCCCeEEEECC--CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCC--CEEEEE
Confidence 3444444 77888887764 568999999999999999999998766544333333333444445555442 1233
Q ss_pred eEEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 796 ICMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 796 vRiss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
....+.|+.++++- .+=.+.| ++|...+...++.+
T Consensus 81 ~~~~~dG~~~~~~~-~~~pi~~-~~g~~~~~v~~~~D 115 (120)
T 2gj3_A 81 VNRRKDKTLYLAEL-TVAPVLN-EAGETIYYLGMHRD 115 (120)
T ss_dssp EEECTTSCEEEEEE-EEEEEEC-TTSCEEEEEEEEEE
T ss_pred EEEcCCCCEEEEEE-EEEEEEC-CCCCEEEEEEEecc
Confidence 23578899988854 4445778 88998887766654
No 95
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=96.57 E-value=0.018 Score=46.89 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=62.7
Q ss_pred CCceeecccHHHHHhhcCCHHHhhcCc--ccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCeeEEcCeEEeEe
Q 003250 738 SMPVFIFANQAGLDMLETTLVALQDIT--LDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVSYEQAVAWKV 815 (836)
Q Consensus 738 ~dP~f~yaN~aal~l~E~~w~~l~~lp--sr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf~ie~A~vW~v 815 (836)
++-.+.|+|+++.+||+++-+++.+.+ +.....+.........+.++...|-.....-....+.|+.++++- .+-.+
T Consensus 12 ~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~ 90 (110)
T 1byw_A 12 ENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCLV-DVVPV 90 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEE-EEEEE
T ss_pred CCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEEEE-EEEEe
Confidence 456899999999999999999999988 555544443344344445555555433222233567888888753 44456
Q ss_pred ecCCCCceEEEEEEecC
Q 003250 816 LAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 816 ~d~~~g~~~gqAa~f~~ 832 (836)
.| ++|...|...++.+
T Consensus 91 ~~-~~g~~~~~~~~~~D 106 (110)
T 1byw_A 91 KN-EDGAVIMFILNFEV 106 (110)
T ss_dssp EC-TTCCEEEEEEEEEE
T ss_pred ec-CCCCEEEEEEEEEe
Confidence 78 88988887776654
No 96
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=96.55 E-value=0.011 Score=59.68 Aligned_cols=112 Identities=11% Similarity=-0.020 Sum_probs=83.0
Q ss_pred hHHHHhh-cCCCceeccCCCC-CceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCee
Q 003250 719 SVLKNLW-QHSDAILCCSLKS-MPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGI 796 (836)
Q Consensus 719 ~~~~~l~-~~~~avl~h~~~~-dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~Gv 796 (836)
..++.++ +.|++|+..+.+. |=.++|.|.++.+||.++-+++.+.+...-..+.........+.++++.|-.....-.
T Consensus 63 ~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~ 142 (258)
T 3p7n_A 63 QWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEIL 142 (258)
T ss_dssp HHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEEE
Confidence 4445444 6788888887654 6679999999999999999999999987776666656666666666666543333344
Q ss_pred EEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 797 CMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 797 Riss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
.+.+.|+.|+++- .+-.+.| ++|...|...++.+
T Consensus 143 ~~~~dG~~~~~~~-~~~pi~d-~~g~~~~~v~~~~D 176 (258)
T 3p7n_A 143 NYKKDGTPFRNAV-LVAPIYD-DDDELLYFLGSQVE 176 (258)
T ss_dssp EECTTSCEEEEEE-EEEEEEC-TTSCSEEEEEEEEE
T ss_pred EEcCCCCEEEEee-EEEEEEc-CCCCEEEEEEEeee
Confidence 5678999998854 5556778 89998888777765
No 97
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=96.55 E-value=0.019 Score=49.62 Aligned_cols=102 Identities=9% Similarity=0.067 Sum_probs=76.6
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeE-EcCCCCe
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGIC-MSTMGRH 804 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvR-iss~Grr 804 (836)
+.++.|+-++. +=.|.|.|.++.+|+.++-+||.+.++..-..|..++...+.+.++++.|-.... =+| +.+.|+.
T Consensus 7 ~~~~~i~~~d~--~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~-e~r~~~~dG~~ 83 (117)
T 3f1p_A 7 DSKTFLSEHSM--DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSG-QYRMLAKHGGY 83 (117)
T ss_dssp GGGEEEEEECT--TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECC-CEEEECTTSSE
T ss_pred CCccEEEEECC--CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeee-EEEEEecCCCE
Confidence 34556665554 6689999999999999999999999887777788888888888888887765443 334 4788999
Q ss_pred eEEcCeEEeEeecCC-CCceEEEEEEecC
Q 003250 805 VSYEQAVAWKVLAPE-DNTVHCLAFSFIN 832 (836)
Q Consensus 805 f~ie~A~vW~v~d~~-~g~~~gqAa~f~~ 832 (836)
+|++- .+--+.| + +|...+...++.+
T Consensus 84 ~w~~~-~~~~~~d-~~~g~~~~iv~~~~D 110 (117)
T 3f1p_A 84 VWLET-QGTVIYN-PRNLQPQCIMCVNYV 110 (117)
T ss_dssp EEEEE-EEEEEEE-TTTTEEEEEEEEEEE
T ss_pred EEEEE-eeEEEEC-CCCCCceEEEEEeee
Confidence 98864 4445677 6 7887776665543
No 98
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=96.54 E-value=0.011 Score=55.02 Aligned_cols=107 Identities=10% Similarity=-0.044 Sum_probs=78.4
Q ss_pred hhcCCCceeccCCC-CCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCC
Q 003250 724 LWQHSDAILCCSLK-SMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMG 802 (836)
Q Consensus 724 l~~~~~avl~h~~~-~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~G 802 (836)
+=+.|++|+..+.+ +|=.+.|.|.++.+||.++-+++.+.+...-..+..+......+.++...|-.....-....+.|
T Consensus 13 ~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG 92 (176)
T 4hia_A 13 FDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLRNYRAND 92 (176)
T ss_dssp HHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTC
T ss_pred HhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEEEEcCCC
Confidence 33677888887764 34689999999999999999999999987666666656666667777776653333334467889
Q ss_pred CeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 803 RHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 803 rrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
+.++++- .+-.+.| ++|...|...++.+
T Consensus 93 ~~~~~~~-~~~pi~~-~~g~~~~~~~~~~D 120 (176)
T 4hia_A 93 EPFDNLL-FLHPVGG-RPDAPDYFLGSQFE 120 (176)
T ss_dssp CEEEEEE-EEEEESS-BTTBCSEEEEEEEE
T ss_pred CEEEEEE-EEEEeeC-CCCCeEEEEEEEEE
Confidence 9998853 4455678 88988887776654
No 99
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=96.51 E-value=0.0067 Score=51.00 Aligned_cols=108 Identities=6% Similarity=-0.057 Sum_probs=72.2
Q ss_pred HHHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEE
Q 003250 720 VLKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICM 798 (836)
Q Consensus 720 ~~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRi 798 (836)
.++.++ +.|++|+..+ .+=.+.|+|+++.++|.++-+++.+.+...-. +..++.....+.++.+.+-.....-..+
T Consensus 4 ~~~~~~~~~~~~i~~~d--~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T 3luq_A 4 RLRLFTEHAPAALAMFD--REMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDCFV 80 (114)
T ss_dssp HHHHHHHTCSSEEEEEE--TTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHhcCCceEEEEc--CCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeEEE
Confidence 344444 6688887766 46789999999999999999999988876655 3334445556666665443222111345
Q ss_pred cCCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 799 STMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 799 ss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
...|+.++++- .+-.+.| ++|...|...++.+
T Consensus 81 ~~~g~~~~~~~-~~~p~~~-~~g~~~~~~~~~~D 112 (114)
T 3luq_A 81 RADGRTQWLRW-EVRPWYE-GEGRVGGVVIFTED 112 (114)
T ss_dssp C--CCEEEEEE-EEEEEEC-TTSCEEEEEEEEEE
T ss_pred cCCCcEEEEEE-EEEEeEC-CCCCEEEEEEEEee
Confidence 67788877743 4446778 89998888777654
No 100
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=96.45 E-value=0.017 Score=51.92 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=71.5
Q ss_pred HhhcCCCceeccCC-CCCceeecccHHHHHhhcCCHHHhhcCcccccCCccc-----------HHHHHHHHHHHHHhCCc
Q 003250 723 NLWQHSDAILCCSL-KSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESG-----------RKALCADFAKLMQQGFT 790 (836)
Q Consensus 723 ~l~~~~~avl~h~~-~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~-----------r~~r~~~l~~v~~qGy~ 790 (836)
.++.++++|+..+. ..+=.++|+|+++.+||.++-+++.+.+...-..+.. ..+....+.+.+.+|-.
T Consensus 30 ~~~~~~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (149)
T 3d72_A 30 GPVDTSVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE 109 (149)
T ss_dssp CSCCTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC
T ss_pred HhhcCCccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCc
Confidence 34556677777653 2456899999999999999999999988765544431 33334444455555543
Q ss_pred cCCCeeEEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEec
Q 003250 791 YLPAGICMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFI 831 (836)
Q Consensus 791 ~~y~GvRiss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~ 831 (836)
....-..+.+.|+.++++- .+-.+.| ++|...|...++.
T Consensus 110 ~~~e~~~~~~dG~~~~~~~-~~~~i~~-~~g~~~~~v~~~~ 148 (149)
T 3d72_A 110 VQVEVVNFKKNGQRFVNFL-TMIPVRD-ETGEYRYSMGFQC 148 (149)
T ss_dssp EEEEEEEECTTCCEEEEEE-EEEEEEC-TTSSEEEEEEECC
T ss_pred eEEEEEEECCCCCEEEEEE-EEEEEEc-CCCCEEEEEEEEe
Confidence 2222234578899998853 4446778 8899888777664
No 101
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=96.40 E-value=0.028 Score=46.99 Aligned_cols=109 Identities=7% Similarity=-0.015 Sum_probs=75.6
Q ss_pred HhhcCCCceeccC-CCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCC
Q 003250 723 NLWQHSDAILCCS-LKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTM 801 (836)
Q Consensus 723 ~l~~~~~avl~h~-~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~ 801 (836)
.+=+.+++|+..+ ...+-.+.|.|+++.++|+++-+++.+.+...-..+.........+..+...|-.....-..+...
T Consensus 11 ~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (130)
T 2z6d_A 11 ALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNYKKD 90 (130)
T ss_dssp HHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred HHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeEEEEEcCC
Confidence 3345677777766 224668999999999999999999999887766655555555555556666554322222344667
Q ss_pred CCeeEEcCeEEeEeecCCCCceEEEEEEecCc
Q 003250 802 GRHVSYEQAVAWKVLAPEDNTVHCLAFSFINW 833 (836)
Q Consensus 802 Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~W 833 (836)
|+.++++ ..+..+.| ++|...|...++.+-
T Consensus 91 g~~~~~~-~~~~~~~~-~~g~~~~~~~~~~Di 120 (130)
T 2z6d_A 91 GTPFWNL-LTVTPIKD-DQGNTIKFIGMQVEV 120 (130)
T ss_dssp SCEEEEE-EEEEEEEC-TTSCEEEEEEEEEEC
T ss_pred CcEEEEE-EEEEEEEC-CCCCeeEEEEEEecc
Confidence 8888774 45667778 889988887777653
No 102
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=96.26 E-value=0.022 Score=51.74 Aligned_cols=113 Identities=12% Similarity=-0.006 Sum_probs=80.1
Q ss_pred hhHHHHhh-cCCCceeccCCCCC-ceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCe
Q 003250 718 DSVLKNLW-QHSDAILCCSLKSM-PVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAG 795 (836)
Q Consensus 718 ~~~~~~l~-~~~~avl~h~~~~d-P~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~G 795 (836)
+..++.++ +.+++|+..+.+.+ ..+.|+|.++.+||.++-+++.+.+......+..+......+.++...|-.....-
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 34455554 67788877765432 29999999999999999999999988776666555555666666676665433333
Q ss_pred eEEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 796 ICMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 796 vRiss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
..+...|+.++++ ..+-.+.| ++|...|...++.+
T Consensus 104 ~~~~~~g~~~~~~-~~~~~i~~-~~g~~~~~~~~~~D 138 (162)
T 3sw1_A 104 RNYRKDGSAFWNE-LSITPVKS-DFDQRTYFIGIQKD 138 (162)
T ss_dssp EEECTTCCEEEEE-EEEEEEEC-SSSSCEEEEEEEEE
T ss_pred EEECCCCCEEEEE-EEEEEeec-CCCCEEEEEEEEEe
Confidence 3456788888875 45556778 88988888777654
No 103
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=96.14 E-value=0.011 Score=51.71 Aligned_cols=105 Identities=12% Similarity=0.114 Sum_probs=65.0
Q ss_pred HHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccH-HHHHHHHHHHHHhCCccCCCeeEE
Q 003250 721 LKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGR-KALCADFAKLMQQGFTYLPAGICM 798 (836)
Q Consensus 721 ~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r-~~r~~~l~~v~~qGy~~~y~GvRi 798 (836)
++.++ +.|++|+ .+ .+=.+.|+|+++.+||.++-+++.+.+...-..+... ......+.+.+.+|-.....-...
T Consensus 5 ~~~~~~~~~~~i~-~~--~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (120)
T 3mqq_A 5 YKTAFHLAPIGLV-LS--RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIMK 81 (120)
T ss_dssp HHHHHHHCSSEEE-EE--ETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEEE
T ss_pred HHHHHhcCCceEE-Ee--cCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEEE
Confidence 44455 6677775 33 3678999999999999999999999987655544322 233333334444332222222345
Q ss_pred cCCCCeeEEcCeEEeEeecCCCCceEEEEEEec
Q 003250 799 STMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFI 831 (836)
Q Consensus 799 ss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~ 831 (836)
.+.|+.|+++ +....+| .+|...|...+|.
T Consensus 82 ~~dG~~~~~~--~~~~~~~-~~~~~~~~v~~~~ 111 (120)
T 3mqq_A 82 RAGGELFWCH--VTGRALD-RTAPLAAGVWTFE 111 (120)
T ss_dssp CTTSCEEEEE--EEEEESS-TTSTTSSEEEEEE
T ss_pred eCCCCEEEEE--EEEEECC-CCCCceeEEEEEE
Confidence 7889999886 3345556 6665445444444
No 104
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=96.10 E-value=0.043 Score=46.84 Aligned_cols=112 Identities=11% Similarity=0.060 Sum_probs=72.5
Q ss_pred hHHHHhhcCCCceeccCCCC-CceeecccHHHHHhhcCCHHHhhcCc--ccccCCcccHHHHHHHHHHHHHhCCccCCCe
Q 003250 719 SVLKNLWQHSDAILCCSLKS-MPVFIFANQAGLDMLETTLVALQDIT--LDKIFDESGRKALCADFAKLMQQGFTYLPAG 795 (836)
Q Consensus 719 ~~~~~l~~~~~avl~h~~~~-dP~f~yaN~aal~l~E~~w~~l~~lp--sr~tae~~~r~~r~~~l~~v~~qGy~~~y~G 795 (836)
.++..+=+.+++|+..+.+. +=.+.|+|+++.++|+++-+++.+.+ .+.-..+.........+.++...|-.....=
T Consensus 20 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (138)
T 2l0w_A 20 TIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEI 99 (138)
T ss_dssp HHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEE
T ss_pred HHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEE
Confidence 44445555788888876532 45899999999999999999999988 5554444444443444445554443222112
Q ss_pred eEEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 796 ICMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 796 vRiss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
..+.+.|+.++++- .+-.+.| ++|...|...+|.+
T Consensus 100 ~~~~~~g~~~~~~~-~~~~~~~-~~g~~~~~~~~~~D 134 (138)
T 2l0w_A 100 AFYRKDGSCFLCLV-DVVPVKN-EDGAVIMFILNFEV 134 (138)
T ss_dssp EEECTTSCEEEEEE-EEEEEEC-TTSCEEEEEEEEEE
T ss_pred EEECCCCCEEEEEE-EEEEEeC-CCCCEEEEEEEEEe
Confidence 23467788887753 3445667 88888887766654
No 105
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=95.82 E-value=0.076 Score=45.58 Aligned_cols=105 Identities=9% Similarity=-0.008 Sum_probs=73.0
Q ss_pred cCCCceeccCC-CCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCe
Q 003250 726 QHSDAILCCSL-KSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRH 804 (836)
Q Consensus 726 ~~~~avl~h~~-~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grr 804 (836)
+.+++|+..+. +++-.+.|+|.++.++|.++-.++.+.+......+..+......+.++...|-.....-......|+.
T Consensus 10 ~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 89 (146)
T 2v0u_A 10 RIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKK 89 (146)
T ss_dssp GSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEecCCcE
Confidence 45666766654 12568999999999999999999999888766666555555555666666554333333445677888
Q ss_pred eEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 805 VSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 805 f~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
++++ ..+-.+.| ++|...|...++.+
T Consensus 90 ~~~~-~~~~~~~~-~~g~~~~~~~~~~D 115 (146)
T 2v0u_A 90 FWNL-FHLQPMRD-QKGDVQYFIGVQLD 115 (146)
T ss_dssp EEEE-EEEEEEEC-TTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEeEC-CCCCEEEEEEEEee
Confidence 7774 34556678 88988887776654
No 106
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=95.63 E-value=0.13 Score=45.54 Aligned_cols=87 Identities=15% Similarity=0.056 Sum_probs=62.3
Q ss_pred HhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCC-Ce---eEE
Q 003250 723 NLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLP-AG---ICM 798 (836)
Q Consensus 723 ~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y-~G---vRi 798 (836)
.+-+.+++|+..+. +=.+.|.|.|+.+||.++-+|+.+.+...-..+..+......+......|-.... .+ ..+
T Consensus 21 l~~~~~d~i~~~d~--~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 98 (130)
T 1d06_A 21 ILDTVPDATVVSAT--DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRVVSGQ 98 (130)
T ss_dssp HHTTCSSEEEEEET--TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCEEEEEE
T ss_pred HHhhCcCeEEEECC--CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCeeEEEEE
Confidence 34467888888764 5579999999999999999999999876655555555555666666665542211 11 236
Q ss_pred cCCCCeeEEcCeE
Q 003250 799 STMGRHVSYEQAV 811 (836)
Q Consensus 799 ss~Grrf~ie~A~ 811 (836)
.+.|+.|+++-.+
T Consensus 99 ~kdG~~~~~~~~~ 111 (130)
T 1d06_A 99 RKDGSTFPMKLAV 111 (130)
T ss_dssp CTTSCEEEEEEEE
T ss_pred eCCCCEEEEEEEE
Confidence 8999999987544
No 107
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=95.58 E-value=0.088 Score=46.75 Aligned_cols=104 Identities=10% Similarity=-0.068 Sum_probs=64.2
Q ss_pred hhcCCCceeccCCCC-CceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCC
Q 003250 724 LWQHSDAILCCSLKS-MPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMG 802 (836)
Q Consensus 724 l~~~~~avl~h~~~~-dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~G 802 (836)
+-+.+++|+..+.+. |=.+.|.|+++.+|++++-+|+.+.+...-..+.........+.+.+++|-...+.-....+.|
T Consensus 5 ~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG 84 (132)
T 2pr5_A 5 LDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDG 84 (132)
T ss_dssp -CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTS
T ss_pred HhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEecCC
Confidence 346788888776543 4489999999999999999999998765443333333333444455555542222223457899
Q ss_pred CeeEEcCeEEeEeecCCCCceEEEEEEec
Q 003250 803 RHVSYEQAVAWKVLAPEDNTVHCLAFSFI 831 (836)
Q Consensus 803 rrf~ie~A~vW~v~d~~~g~~~gqAa~f~ 831 (836)
+.|+++-.+. .+.| ++ ..+...++.
T Consensus 85 ~~~~~~~~~~-~~~~-~~--~~~~~~~~~ 109 (132)
T 2pr5_A 85 TMFWNELNID-PMEI-ED--KTYFVGIQN 109 (132)
T ss_dssp CEEEEEEEEE-EEEE-TT--EEEEEEEEE
T ss_pred CeeeeEEEEE-eccC-CC--eeEEEEEEE
Confidence 9998864332 3445 43 444444443
No 108
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=95.52 E-value=0.023 Score=54.30 Aligned_cols=110 Identities=8% Similarity=0.038 Sum_probs=76.8
Q ss_pred hhHHHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCee
Q 003250 718 DSVLKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGI 796 (836)
Q Consensus 718 ~~~~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~Gv 796 (836)
++.++.++ +.|++|+..+. .|-.+.|+|.++.++|.++ ++.+.+..-.+.+..+......+.++++.|-......+
T Consensus 36 ~~~l~~l~~~~~~~i~~~d~-~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 112 (185)
T 3kx0_X 36 AEDVRRIFEHIPAILVGLEG-PDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEW 112 (185)
T ss_dssp HHHHHHHHHHCSSEEEEEET-TTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhcCCceEEEEEC-CCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccce
Confidence 44555555 67888877651 4678999999999999999 88888877666665555566778888887765444444
Q ss_pred EEcCC-----CCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 797 CMSTM-----GRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 797 Riss~-----Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
++... |+..+++ ..+-.+.| ++|...|...++.+
T Consensus 113 ~~~~~~~~~gg~~~~~~-~~~~pi~~-~~g~~~g~~~~~~D 151 (185)
T 3kx0_X 113 RLQTDYDGSGVEERYFD-FVVTPRRR-ADGSIEGVQLIVDD 151 (185)
T ss_dssp EEC--------CCEEEE-EEEEEEEC-TTSCEEEEEEEEEE
T ss_pred eEEeeccCCCCccEEEE-EEEEEEEC-CCCCEEEEEEEEEe
Confidence 44221 6666664 34556778 89999998887764
No 109
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.46 E-value=0.067 Score=55.86 Aligned_cols=107 Identities=9% Similarity=0.007 Sum_probs=78.4
Q ss_pred hhcCCCceeccCCC-CCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCC
Q 003250 724 LWQHSDAILCCSLK-SMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMG 802 (836)
Q Consensus 724 l~~~~~avl~h~~~-~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~G 802 (836)
+-+.|++|+..+.. ++=.+.|+|+++.+|++++-+|+.+.+...-..+..+.+....+.++++.|-.....-....+.|
T Consensus 17 ~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG 96 (332)
T 2wkq_A 17 LERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSG 96 (332)
T ss_dssp GGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTC
T ss_pred hhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCCC
Confidence 44678888877642 26689999999999999999999999887665555555555556666665543322333467889
Q ss_pred CeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 803 RHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 803 rrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
+.++++ ..+..+.| ++|...|...++.+
T Consensus 97 ~~~~~~-~~~~pi~d-~~g~~~~~v~~~~D 124 (332)
T 2wkq_A 97 KKFWNL-FHLQPMRD-QKGDVQYFIGVQLD 124 (332)
T ss_dssp CEEEEE-EEEEEEEC-TTSCEEEEEEEEEE
T ss_pred CEEEEe-eEEEEeEc-CCCCEEEEEEEecc
Confidence 999885 46667888 89999988877765
No 110
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=95.42 E-value=0.036 Score=48.73 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=58.9
Q ss_pred hhHHHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCee
Q 003250 718 DSVLKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGI 796 (836)
Q Consensus 718 ~~~~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~Gv 796 (836)
++.++.++ +.+++|+..+. +=.|.|.|+|+.+|+.++-+|+.+.+...-.++..+......+..+...+. ..+.-.
T Consensus 10 e~~~~~l~e~~~d~i~~~d~--~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 86 (117)
T 2r78_A 10 SNAYRALFEHAIDGIFIMDA--EGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEP-LREERT 86 (117)
T ss_dssp HHHHHHHHHHCSSEEEEECT--TSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTCC-EEEEEE
T ss_pred HHHHHHHHhcCCceEEEECC--CCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCCc-EEEEEE
Confidence 45667766 67888887765 458999999999999999999999876543333222222234444443332 222333
Q ss_pred EEcCCCCeeEEcCe
Q 003250 797 CMSTMGRHVSYEQA 810 (836)
Q Consensus 797 Riss~Grrf~ie~A 810 (836)
.+.+.|+.++++-.
T Consensus 87 ~~~kdG~~~~v~~~ 100 (117)
T 2r78_A 87 VWTRNGDQLTVELS 100 (117)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEecCCCEEEEEEE
Confidence 46789998888643
No 111
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=95.22 E-value=0.05 Score=47.36 Aligned_cols=103 Identities=11% Similarity=0.131 Sum_probs=71.0
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHH-hCCccCCCeeE-EcCCCC
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQ-QGFTYLPAGIC-MSTMGR 803 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~-qGy~~~y~GvR-iss~Gr 803 (836)
+.++.|+.++. +=.|+|.|.++.+++.++-+|+.+.++..-..|..++.....+.++++ .|-...+ =.| +.+.|+
T Consensus 10 ~~~d~i~~~d~--~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~-e~r~~~~dG~ 86 (121)
T 3f1p_B 10 QPTRFISRHNI--EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSV-MFRFRSKNQE 86 (121)
T ss_dssp CCCEEEEEECT--TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEE-EEEEECTTSC
T ss_pred CCCceEEEECC--CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccE-EEEEEecCCC
Confidence 56677766654 668999999999999999999999987666667777766666767664 3322111 123 378899
Q ss_pred eeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 804 HVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 804 rf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
.+|++- .+-.+.|+++|...+...++.+
T Consensus 87 ~~w~~~-~~~~~~~~~~g~~~~iv~~~~D 114 (121)
T 3f1p_B 87 WLWMRT-SSFTFQNPYSDEIEYIICTNTN 114 (121)
T ss_dssp EEEEEE-EEEEECCTTCCCCCEEEEEEEE
T ss_pred EEEEEE-EEEEEECCCCCceeEEEEEeEE
Confidence 998863 3344667226777776655543
No 112
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=95.19 E-value=0.15 Score=44.26 Aligned_cols=83 Identities=8% Similarity=0.058 Sum_probs=59.3
Q ss_pred CCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCC-Ce---eEEcCCC
Q 003250 727 HSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLP-AG---ICMSTMG 802 (836)
Q Consensus 727 ~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y-~G---vRiss~G 802 (836)
.+++|+..+. +=.+.|.|.|+.+||.++-+|+.+.+...-..+..+......+......|-.... .+ ..+.+.|
T Consensus 2 ~~d~i~~~d~--~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG 79 (119)
T 2vv6_A 2 IPDAMIVIDG--HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDG 79 (119)
T ss_dssp CCCEEEEEET--TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTS
T ss_pred CcceEEEECC--CCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCC
Confidence 4677776653 5689999999999999999999999877666555555555666666666543211 12 2357899
Q ss_pred CeeEEcCeE
Q 003250 803 RHVSYEQAV 811 (836)
Q Consensus 803 rrf~ie~A~ 811 (836)
+.|+++-.+
T Consensus 80 ~~~~~~~~~ 88 (119)
T 2vv6_A 80 TTFPMHLSI 88 (119)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 999987544
No 113
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=95.09 E-value=0.042 Score=50.00 Aligned_cols=109 Identities=7% Similarity=0.036 Sum_probs=75.5
Q ss_pred hHHHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeE
Q 003250 719 SVLKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGIC 797 (836)
Q Consensus 719 ~~~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvR 797 (836)
+.++.++ +.|++|+..+ ..+-.+.|.|.++.++|.++ ++.+.+..--+.+..+......+.++++.|-......++
T Consensus 17 ~~~~~~~~~~~~~i~~~d-~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 93 (158)
T 3k3c_A 17 EDVRRIFEHIPAILVGLE-GPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEWR 93 (158)
T ss_dssp HHHHHHHHHCSSEEEEEE-TTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHhcCCceEEEEE-CCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccccccee
Confidence 3444444 6788877665 14668999999999999999 888888776666666666677888888877643333333
Q ss_pred E--cCC---CCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 798 M--STM---GRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 798 i--ss~---Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
+ ... |+..+++ ..+-.+.| ++|...|...++.+
T Consensus 94 ~~~~~~~~~g~~~~~~-~~~~pi~~-~~g~~~g~~~~~~D 131 (158)
T 3k3c_A 94 LQTDYDGSGVEERYFD-FVVTPRRR-ADGSIEGVQLIVDD 131 (158)
T ss_dssp EEEESSSSCEEEEEEE-EEEEEEEC-TTSCEEEEEEEEEE
T ss_pred EEeccCCCCcceEEEE-EEEEEeEC-CCCCEEEEEEEEEe
Confidence 3 322 5555553 34455678 89999998887765
No 114
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=94.85 E-value=0.24 Score=48.84 Aligned_cols=105 Identities=13% Similarity=0.017 Sum_probs=72.4
Q ss_pred hhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCC
Q 003250 724 LWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGR 803 (836)
Q Consensus 724 l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Gr 803 (836)
+-+.+++|+..+ .+-.+.|.|.++.+|+.++-+|+.+.+.+.-..+....+....+.+.++.|-.....=....+.|+
T Consensus 117 ~~~~~~~i~~~d--~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~ 194 (227)
T 3ewk_A 117 MDANSEMILLTD--RAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGP 194 (227)
T ss_dssp HHTCCSEEEEEC--TTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCS
T ss_pred HhcCcCeEEEEc--CCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCC
Confidence 345677777655 467899999999999999999999988766555544455555555555555332223344566776
Q ss_pred ------eeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 804 ------HVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 804 ------rf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
.|+++- .+=-+.| ++|...|...++.+
T Consensus 195 ~~~dg~~~~~~~-~~~pi~d-~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 195 APHDAEDYWAEI-STTPIHT-DGNGLVGYVQIQHD 227 (227)
T ss_dssp SSSCEEEEEEEE-EEEEEEC-SSSCEEEEEEEEEC
T ss_pred cCcccceEEEEE-EEEEEEC-CCCCEEEEEEEecC
Confidence 677654 4456788 99999888777653
No 115
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=94.77 E-value=0.09 Score=51.97 Aligned_cols=93 Identities=9% Similarity=-0.058 Sum_probs=67.2
Q ss_pred CCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCeeEEcCeEEeEeec
Q 003250 738 SMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVSYEQAVAWKVLA 817 (836)
Q Consensus 738 ~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf~ie~A~vW~v~d 817 (836)
.+=.+.|+|.++.+||.++-+|+.+.+.+.-..+...++....+.+....|-.....-....+.|+.|+++- .+=-+.|
T Consensus 7 ~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~-~~~p~~d 85 (227)
T 3ewk_A 7 LQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS-TIVPLMD 85 (227)
T ss_dssp TTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE-EEEEEEC
T ss_pred CCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee-EEEEEEc
Confidence 356799999999999999999999998776554444444445555556666544434455688999999864 4455778
Q ss_pred CCCCceEEEEEEecC
Q 003250 818 PEDNTVHCLAFSFIN 832 (836)
Q Consensus 818 ~~~g~~~gqAa~f~~ 832 (836)
++|...|...++.+
T Consensus 86 -~~g~~~~~~~~~~D 99 (227)
T 3ewk_A 86 -NAGKPRQYISIRRD 99 (227)
T ss_dssp -SSSCEEEEEEEEEE
T ss_pred -CCCCEEEEEEEEEe
Confidence 89998887766543
No 116
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=94.73 E-value=0.11 Score=44.33 Aligned_cols=101 Identities=16% Similarity=0.043 Sum_probs=70.0
Q ss_pred hcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCe
Q 003250 725 WQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRH 804 (836)
Q Consensus 725 ~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grr 804 (836)
=+.+++|+..+. +=.+.|+|.++.++|+++-+++.+.+..--..+..+......+.++...+.. .+.-......|+.
T Consensus 6 ~~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 82 (126)
T 3mjq_A 6 ETIEDMILIINR--EGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKKEGTS 82 (126)
T ss_dssp GGCSSEEEEEET--TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECTTSCE
T ss_pred hhCCceEEEEeC--CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEccCCCE
Confidence 356788887765 5689999999999999999999999887767677777777788888776654 2222233678888
Q ss_pred eEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 805 VSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 805 f~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
++++- .+..+.+ +...|...++.+
T Consensus 83 ~~~~~-~~~~~~~---~~~~~~~~~~~D 106 (126)
T 3mjq_A 83 IPAKA-RIWQGKW---HNEPCLFAIIKD 106 (126)
T ss_dssp EEEEE-EEEEEES---SSSEEEEEEEEE
T ss_pred EEEEE-EEEeeeE---CCceEEEEEEEe
Confidence 88753 3343433 223455455543
No 117
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=94.51 E-value=0.16 Score=43.70 Aligned_cols=100 Identities=11% Similarity=0.122 Sum_probs=65.9
Q ss_pred hcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCC-ccCCCeeE-EcCCC
Q 003250 725 WQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGF-TYLPAGIC-MSTMG 802 (836)
Q Consensus 725 ~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy-~~~y~GvR-iss~G 802 (836)
-+.++.|+.++. +=.+.|.|.++.+||.++-+|+.+.+...-..+..++.....+.++++.+- .... =.| +.+.|
T Consensus 10 ~~~~~~i~~~d~--~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~-e~r~~~~dG 86 (121)
T 2kdk_A 10 VKPTEFITRFAV--NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTD-SYKFRAKDG 86 (121)
T ss_dssp CCSSEEEEEECT--TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEE-EEEEECSSS
T ss_pred cCCccEEEEECC--CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccE-EEEEEEcCC
Confidence 356777777765 568999999999999999999999876555556666666666777666432 1111 123 47889
Q ss_pred CeeEEcCeEEeEeecCCC-CceEEEEEE
Q 003250 803 RHVSYEQAVAWKVLAPED-NTVHCLAFS 829 (836)
Q Consensus 803 rrf~ie~A~vW~v~d~~~-g~~~gqAa~ 829 (836)
+.++++- .+-.+.| ++ +...+...+
T Consensus 87 ~~~~~~~-~~~~~~d-~~~~~~~~~v~~ 112 (121)
T 2kdk_A 87 SFVTLKS-QWFSFTN-PDTKELEYIVSV 112 (121)
T ss_dssp CEEEEEE-EEEEEEC-CSSSCEEEEEEE
T ss_pred CEEEEEE-EEEEEEC-CCCCeeeEEEEE
Confidence 9998863 2334566 54 444444433
No 118
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=94.21 E-value=1.3 Score=45.52 Aligned_cols=173 Identities=19% Similarity=0.280 Sum_probs=96.0
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHH-HHHHhhhhhcccccccchhh
Q 003250 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALL-VRFLREHRSEWADFNVDAYS 482 (836)
Q Consensus 404 ~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~l-f~FLRd~RseWd~l~~d~~s 482 (836)
...+|..... .++|+|..++..+ + . .+-.-++..-+ +.+|+.+ +++|.| |.+||.. .
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~~-~-~-----------~~~~~K~~~~v-~~~~~~v~~~ll~d-r~~Wd~~-----~ 105 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVGD-G-N-----------PLKLWKASVEV-EAPPSVVLNRVLRE-RHLWDED-----F 105 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCCS-S-C-----------CCCEEEEEEEE-SSCHHHHHHHHHHC-GGGTCTT-----B
T ss_pred CCCCCEEEec--CCCeEEEEEEcCC-C-C-----------CcEEEEEEEEE-cCChHHHHHHHHhh-hhhHHhh-----h
Confidence 4568987643 5789999987521 1 1 12233556666 5666555 578888 9999974 1
Q ss_pred hhhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceEEEeeecccCCCCCCceeEEE
Q 003250 483 AASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIHLLQICSGVDENAVGACSELV 562 (836)
Q Consensus 483 ~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~~~Gs~s~vV 562 (836)
. ..+++-.|. ..+.|--....... .+-+||..++.-. ..|. ..|+| .++
T Consensus 106 ----~---------------~~~vle~id----~~~~I~y~~~~~p~-----p~~~RDfv~~r~~-r~~~-~~g~~-vi~ 154 (237)
T 2pso_A 106 ----V---------------QWKVVETLD----RQTEIYQYVLNSMA-----PHPSRDFVVLRTW-KTDL-PKGMC-TLV 154 (237)
T ss_dssp ----C---------------CCEEEEEEE----TTEEEEEEEECCSS-----SCCCEEEEEEEEE-ESCC-GGGCE-EEE
T ss_pred ----c---------------eEEEEEEcC----CCcEEEEEEecCCC-----CcCCeEEEEEEEE-EEEC-CCCEE-EEE
Confidence 0 134444442 22223222332221 2456788877763 3331 13542 333
Q ss_pred EeeccCCC-C--C--CCcccCCccEEecCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCCCCCCceEEEEee
Q 003250 563 FAPIDEMF-P--D--DGPLLPSGFRIIPLDSKTPDTPDTLTAHRTLDLTSSLEVGPATNPAAGDSSSCHHTRSVLTIAFQ 637 (836)
Q Consensus 563 yAPvD~~d-s--~--~v~LLPSGF~I~P~~~~~~~~~Dg~~~~rtldlas~le~~~~~~~~~~~~~~~~~~gSlLTvAFQ 637 (836)
...|+-++ | . -+..+|+||.|-|++ .++|.+|.-+|
T Consensus 155 ~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~---------------------------------------~~~t~vt~~~~ 195 (237)
T 2pso_A 155 SLSVEHEEAQLLGGVRAVVMDSQYLIEPCG---------------------------------------SGKSRLTHICR 195 (237)
T ss_dssp EEECCCTTCCCCSSEECCEEEEEEEEEECS---------------------------------------TTCEEEEEEEE
T ss_pred EEcccCCCCCCCCcEEEEEeccEEEEEECC---------------------------------------CCCEEEEEEEE
Confidence 44555431 1 1 244677888888821 14677777776
Q ss_pred ccccccchhhHHhHhhhhHHHHHHHHHHHHHHhc
Q 003250 638 FPFESNLQDNVATMARQYVRSVISSVQRVAMAIC 671 (836)
Q Consensus 638 ~l~~~~~~~sva~~a~~~v~~v~~tvqri~~Al~ 671 (836)
+=.....-..+ ++-+......++.+++.++.
T Consensus 196 ~Dp~G~iP~~l---n~~~~~~~~~~l~~LR~~~~ 226 (237)
T 2pso_A 196 IDLKGHSPEWY---SKGFGHLCAAEVARIRNSFQ 226 (237)
T ss_dssp ECCSSSCTTTT---TTHHHHHHHHHHHHHHHTTS
T ss_pred eCCCCCchHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 65554333332 44455566679999999985
No 119
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=94.20 E-value=1.1 Score=45.40 Aligned_cols=129 Identities=17% Similarity=0.234 Sum_probs=73.7
Q ss_pred CCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhcccccccchhh
Q 003250 405 DDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADFNVDAYS 482 (836)
Q Consensus 405 ~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l~~d~~s 482 (836)
..+|..... .++|+|..+...+. ++-+. ++..-+ ++||+.||++|.| .|.+||..-.
T Consensus 42 ~~~W~~~~~--~~gv~vy~~~~~~~------------~~~~~--k~~~~v-~~~~~~v~~~l~d~~~r~~Wd~~~~---- 100 (224)
T 1jss_A 42 EDEWRVAKK--AKDVTVWRKPSEEF------------NGYLY--KAQGVM-DDVVNNVIDHIRPGPWRLDWDRLMT---- 100 (224)
T ss_dssp GGGCEEEEE--ETTEEEEEEECSSS------------SSEEE--EEEEEE-SSCHHHHHHHHSSSTTHHHHCSSEE----
T ss_pred CCCCEEEEE--CCCEEEEEEeccCC------------CceEE--EEEEEE-eCCHHHHHHHHhCccccccccccee----
Confidence 568986643 37899998854321 23333 445556 8999999999998 8999997511
Q ss_pred hhhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceEEEeeecccCCCCCCceeEEE
Q 003250 483 AASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIHLLQICSGVDENAVGACSELV 562 (836)
Q Consensus 483 ~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~s~~De~~~Gs~s~vV 562 (836)
+ .+++-+| +....|--....... -.-+-+||..++... ..++ .| .+++
T Consensus 101 -----~---------------~~vle~i----d~~~~I~y~~~~~~~---~~~v~~RDfv~~r~~-~~~~--~~--~vi~ 148 (224)
T 1jss_A 101 -----S---------------LDVLEHF----EENCCVMRYTTAGQL---LNIISPREFVDFSYT-VGYE--EG--LLSC 148 (224)
T ss_dssp -----E---------------EEEEEEC----STTEEEEEEEECCBT---TTTBCCEEEEEEEEE-EEET--TE--EEEE
T ss_pred -----e---------------EEEEEEc----CCCeEEEEEEccccc---CCCCCCCeEEEEEEE-EEcC--Ce--EEEE
Confidence 1 2344444 222233222222110 011457788888863 2332 23 3556
Q ss_pred EeeccCCC--CCC--CcccCCccEEecC
Q 003250 563 FAPIDEMF--PDD--GPLLPSGFRIIPL 586 (836)
Q Consensus 563 yAPvD~~d--s~~--v~LLPSGF~I~P~ 586 (836)
.-.||-++ +.+ +.++++||.|.|+
T Consensus 149 ~~Sv~hp~~~~g~VR~~~~~~g~~i~p~ 176 (224)
T 1jss_A 149 GVSVEWSETRPEFVRGYNHPCGWFCVPL 176 (224)
T ss_dssp EEECCCCCCCTTSEECEECSEEEEEEEE
T ss_pred EeeeecCCCCCCCEEEEecccEEEEEEc
Confidence 66676443 233 2467888888883
No 120
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=94.17 E-value=1.4 Score=44.39 Aligned_cols=193 Identities=11% Similarity=0.138 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHH
Q 003250 385 LRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVR 464 (836)
Q Consensus 385 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~ 464 (836)
-.++++.-...+..-+. ..++|.... ...++|.|..++.. + .|.+ -++...+ ++||+.||+
T Consensus 12 y~~~~~~~~~~~l~~~~--~~~gW~~~~-~~~~gv~vy~~~~~---~----------~g~~--~k~~~~v-~~~~~~v~~ 72 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS--NQEGWKKES-QQDNGDKVMSKVVP---D----------VGKV--FRLEVVV-DQPMERLYE 72 (221)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCEEEE-ECTTSCEEEEEECS---S----------SCEE--EEEEEEE-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCeEee-ecCCCcEEEEEEcC---C----------CceE--EEEEEEE-cCCHHHHHH
Confidence 34555555555554443 357898773 12456788888742 1 1333 3555667 899999999
Q ss_pred HHh-h--hhhcccccccchhhhhhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCce
Q 003250 465 FLR-E--HRSEWADFNVDAYSAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDI 541 (836)
Q Consensus 465 FLR-d--~RseWd~l~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~ 541 (836)
+|. | .|.+||.. . + ..+++-.+.. ... |+..... ..--.-+-+||.
T Consensus 73 ~l~~d~~~r~~Wd~~-----~----~---------------~~~vle~~~~----~t~--I~y~~~~-~~~~~~v~~RDf 121 (221)
T 3p0l_A 73 ELVERMEAMGEWNPN-----V----K---------------EIKVLQKIGK----DTF--ITHELAA-EAAGNLVGPRDF 121 (221)
T ss_dssp HHTTTGGGTTTSCTT-----C----S---------------EEEEEEECSS----SEE--EEEEEEC-C---CCSCCEEE
T ss_pred HHHhccchhhhcCcc-----h----h---------------eEEEEEecCC----CeE--EEEEeec-cccCCccCCceE
Confidence 995 4 89999974 1 1 1344444422 222 3332110 000012446788
Q ss_pred EEEeeecccCCCCCCceeEEEEeeccCC----CCCCC--cccCCccEEecCCCCCCCCCCCcccccccccccccccCCCC
Q 003250 542 HLLQICSGVDENAVGACSELVFAPIDEM----FPDDG--PLLPSGFRIIPLDSKTPDTPDTLTAHRTLDLTSSLEVGPAT 615 (836)
Q Consensus 542 liLQe~s~~De~~~Gs~s~vVyAPvD~~----ds~~v--~LLPSGF~I~P~~~~~~~~~Dg~~~~rtldlas~le~~~~~ 615 (836)
.+|... ..+ .|+ -+++.-.|+-+ .+.+| .++++||.|-|++. |
T Consensus 122 v~~r~~-~~~---~~~-~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~-------~------------------- 170 (221)
T 3p0l_A 122 VSVRCA-KRR---GST-CVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAG-------S------------------- 170 (221)
T ss_dssp EEEEEE-EEC---SSC-EEECCEECCCTTSCCCTTSEECEECSCEEEEEEETT-------E-------------------
T ss_pred EEEEEE-EEc---CCe-EEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCC-------C-------------------
Confidence 887763 233 243 23333445533 23333 47899999988310 0
Q ss_pred CCCCCCCCCCCCCCceEEEEeeccccccchhhHHhHhhhhHHHHHHHHHHHHHHhc
Q 003250 616 NPAAGDSSSCHHTRSVLTIAFQFPFESNLQDNVATMARQYVRSVISSVQRVAMAIC 671 (836)
Q Consensus 616 ~~~~~~~~~~~~~gSlLTvAFQ~l~~~~~~~sva~~a~~~v~~v~~tvqri~~Al~ 671 (836)
..+|.+|.-+|+=.....-..+.. .-...++..+++.++.++.
T Consensus 171 -----------~~~t~vt~~~~~Dp~G~iP~~lvn--~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 171 -----------PSKTKLTWLLSIDLKGWLPKSIIN--QVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp -----------EEEEEEEEEECEECCSSCCHHHHH--HHHHHHHHHHHHHHHHHTC
T ss_pred -----------CCcEEEEEEEEecCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 136777777777665543332322 1223556678888888886
No 121
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=94.08 E-value=0.26 Score=41.53 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=55.3
Q ss_pred hhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCC
Q 003250 724 LWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGR 803 (836)
Q Consensus 724 l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Gr 803 (836)
+=+.+++|+..+. +=.+.|.|.++.+||+++-+++.+.+...-.++..... +..+.+.+. ..+.-....+.|+
T Consensus 19 ~~~~~~~i~~~d~--~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~~~~~~-~~~e~~~~~~~g~ 91 (118)
T 3olo_A 19 INNAVEASFCLGD--NWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEIRQKNN-YTFKTRYRSQSGR 91 (118)
T ss_dssp HHHCSSEEEEECT--TSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHHHHHSE-EEEEEEEECTTCC
T ss_pred HhcCCceEEEECC--CCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHHHhcCc-EEEEEEEEccCCC
Confidence 4467888888774 56899999999999999999999998765553332222 334444443 2233444678899
Q ss_pred eeEEcCe
Q 003250 804 HVSYEQA 810 (836)
Q Consensus 804 rf~ie~A 810 (836)
.++++-.
T Consensus 92 ~~~~~~~ 98 (118)
T 3olo_A 92 IFLVEMS 98 (118)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8888643
No 122
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=94.05 E-value=0.31 Score=51.22 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=88.9
Q ss_pred CCCCchHHHHHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccC
Q 003250 378 LGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNV 457 (836)
Q Consensus 378 ~Gr~~~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pv 457 (836)
+-+. +=+.|+.-.+.+...-. ..++|..... .++|+|..+.. + +.++-++.+-+ ++
T Consensus 43 w~~~--~~~~l~~~n~~al~~l~---~~~gW~~~~~--~~gv~Vy~~~~---~-------------~~l~~k~~~~v-~~ 98 (258)
T 3fo5_A 43 WDPS--NQVYLSYNNVSSLKMLV---AKDNWVLSSE--ISQVRLYTLED---D-------------KFLSFHMEMVV-HV 98 (258)
T ss_dssp CCGG--GHHHHHHHHHHHHHHHH---TCSCCEEEEE--ETTEEEEEEEC---S-------------SCEEEEEEEEE-SS
T ss_pred cCcc--cceecccCCHHHHHhhh---ccCCCEEEec--CCCeEEEEEEC---C-------------CceEEEEEEEE-eC
Confidence 4444 67777776665555333 5689987653 46899987532 1 13555777778 89
Q ss_pred ChhHHHHHHhh--hhhcccccccchhhhhhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCccccc
Q 003250 458 PPALLVRFLRE--HRSEWADFNVDAYSAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDA 535 (836)
Q Consensus 458 pp~~lf~FLRd--~RseWd~l~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~ 535 (836)
||+.||++|.| .|.+||.. +++ .+++.+|. ..++|- ++..... ...
T Consensus 99 ~~~~v~~~L~D~~~R~~WD~~---------~~~---------------~~vle~id----~~~ivY--~~~~p~~--~~~ 146 (258)
T 3fo5_A 99 DAAQAFLLLSDLRQRPEWDKH---------YRS---------------VELVQQVD----EDDAIY--HVTSPAL--GGH 146 (258)
T ss_dssp CHHHHHHHHHCGGGGGGTCTT---------CCE---------------EEEEEEEE----TTEEEE--EEEECCC--TTC
T ss_pred CHHHHHHHHhCchhHhHhhhh---------ccE---------------EEEEEEcC----CCeEEE--EEecCCc--cCC
Confidence 99999999997 79999974 111 34444442 223443 3322111 122
Q ss_pred ccCCceEEEeeecccCCCCCCceeEEE-EeeccCC----CCCCC--cccCCccEEecC
Q 003250 536 FVSRDIHLLQICSGVDENAVGACSELV-FAPIDEM----FPDDG--PLLPSGFRIIPL 586 (836)
Q Consensus 536 ~~~~~~liLQe~s~~De~~~Gs~s~vV-yAPvD~~----ds~~v--~LLPSGF~I~P~ 586 (836)
+-+||..+|... ..++ ..|. .+|| .-.|+-+ -+.+| ..+|+||.|.|+
T Consensus 147 v~~RDFV~lr~~-r~~~-~~G~-~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~ 201 (258)
T 3fo5_A 147 TKPQDFVILASR-RKPC-DNGD-PYVIALRSVTLPTHRETPEYRRGETLCSGFCLWRE 201 (258)
T ss_dssp SSCEEEEEEEEE-ECCS-STTC-CEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEE
T ss_pred CCCCEEEEEEEE-Eecc-CCCC-EEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEEC
Confidence 456777777753 2321 3453 2333 3345433 23444 689999999993
No 123
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=93.99 E-value=0.34 Score=40.27 Aligned_cols=106 Identities=10% Similarity=-0.029 Sum_probs=67.8
Q ss_pred HHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCc--ccccCCcccHHHHHHHHHHHHHhCCccCCCeeEE-
Q 003250 722 KNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDIT--LDKIFDESGRKALCADFAKLMQQGFTYLPAGICM- 798 (836)
Q Consensus 722 ~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lp--sr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRi- 798 (836)
..+-+.+++|+..+.+. =.+.|.|.++.++|+++-+++.+.+ +.....+..+..-...+.++. .|-... .-+++
T Consensus 15 ~~~~~~~~~i~~~d~~~-~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~e~~~~ 91 (125)
T 3eeh_A 15 ELTEATNDILWEFTADL-SEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLM-DGESAD-VECRVN 91 (125)
T ss_dssp HHHSCCCCEEEEEETTS-SCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHH-TTCCEE-EEEEEC
T ss_pred HHHhcCCceEEEEEcCC-CcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHH-cCCCcc-EEEEEE
Confidence 34446777777776541 3789999999999999999999877 333444555555555555533 332211 12333
Q ss_pred cCCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 799 STMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 799 ss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
...|+.++++- .+-.+.| ++|...+...++.+
T Consensus 92 ~~~g~~~~~~~-~~~~~~~-~~g~~~~~~~~~~D 123 (125)
T 3eeh_A 92 ATEEYQRWVWI-QGEPITN-DAGETVRVAGFARD 123 (125)
T ss_dssp GGGTTCEEEEE-EEEEEEC-TTSCEEEEEEEEEE
T ss_pred cCCCCEEEEEE-ecEEEEC-CCCCEEEEEEEEEe
Confidence 45677777753 4445667 88988887766654
No 124
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=93.95 E-value=0.15 Score=43.60 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=47.6
Q ss_pred HHHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCC
Q 003250 720 VLKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGF 789 (836)
Q Consensus 720 ~~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy 789 (836)
.++.++ +.|++|+..+. +-.+.|.|.++.++|+++-+++.+.+..-..++...+.......++...|-
T Consensus 20 ~~~~i~~~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (125)
T 3fc7_A 20 KFESLVSDSPDGIVHLTT--NGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGT 88 (125)
T ss_dssp ------CCSCCEEEEEET--TSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCCeEEEEcC--CCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCC
Confidence 334444 67888888765 568999999999999999999999998877744444444444466666664
No 125
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=93.92 E-value=0.19 Score=48.19 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=74.8
Q ss_pred HHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCcc--------
Q 003250 721 LKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTY-------- 791 (836)
Q Consensus 721 ~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~-------- 791 (836)
++.++ +.+++|+.-+. |=.+.|.|+++.+++.++-+++.+-+..-.+++ .++.-.+.+.++++.|--.
T Consensus 24 l~~il~~~~~gi~v~D~--~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~~~~ 100 (152)
T 3mxq_A 24 LSELLDQLSFALCIVRN--DYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQKP 100 (152)
T ss_dssp HHHHHHHHCCEEEEEET--TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECCSSS
T ss_pred HHHHHhcCCCCEEEEcC--CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeeccccc
Confidence 34333 56777776654 678999999999999999999999888777766 5555666788888876311
Q ss_pred ----CCCeeEEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecCc
Q 003250 792 ----LPAGICMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFINW 833 (836)
Q Consensus 792 ----~y~GvRiss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~W 833 (836)
...+-.++..|+++ +-+.+++-|.| ++|...|.++++.+=
T Consensus 101 ~~~~~~~~~~~~~~~~~~-~~~~ti~Pl~d-~~G~v~gv~~ii~DV 144 (152)
T 3mxq_A 101 HLLPFKSSRPVSGEEEQM-YQNLEVIPIHS-EDGTIEHVCLCVYDV 144 (152)
T ss_dssp CSSCC----------CCE-EEEEEEEEEEC-TTSCEEEEEEEEEEE
T ss_pred ccccccccCCCCCCCcEE-EEEEEEEEEEC-CCCCEEEEEEEEEEC
Confidence 11122345556554 44789999999 999999999887653
No 126
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=93.40 E-value=2.3 Score=42.05 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=46.7
Q ss_pred HHHHHhhhccC--CCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh-
Q 003250 392 LSRGFNDAVNG--FNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE- 468 (836)
Q Consensus 392 M~~~F~~~v~~--s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd- 468 (836)
..+.+|..+.. ....+|..... .++|+|..+.... .++..-++...++++||+.||++|.|
T Consensus 12 ~f~~~~~~l~~~~~~~~~W~~~~~--~~~v~v~~~~~~~--------------~~~~~~k~~~~i~~~~~~~v~~~l~d~ 75 (214)
T 1ln1_A 12 QFWEACAELQQPALAGADWQLLVE--TSGISIYRLLDKK--------------TGLYEYKVFGVLEDCSPTLLADIYMDS 75 (214)
T ss_dssp HHHHTTHHHHSCCCTTTTCEEEEE--ETTEEEEEEEETT--------------TTEEEEEEEEEETTSCHHHHHHHHHCH
T ss_pred HHHHHHHHhccCCCCCCCcEEEEE--CCCeEEEEeccCC--------------CCcEEEEEEEEECCCCHHHHHHHHcCH
Confidence 33444444433 24568987754 3579998876531 13445566777834999999999997
Q ss_pred -hhhccccc
Q 003250 469 -HRSEWADF 476 (836)
Q Consensus 469 -~RseWd~l 476 (836)
.|.+||..
T Consensus 76 ~~r~~Wd~~ 84 (214)
T 1ln1_A 76 DYRKQWDQY 84 (214)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHHHHH
Confidence 89999974
No 127
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=93.30 E-value=3.1 Score=40.43 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=39.9
Q ss_pred CCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHHHHHhh--hhhccccc
Q 003250 406 DGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (836)
Q Consensus 406 ~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (836)
++|..... .++|+|..+...+. ++..-++...+ +.||+.||++|.| .|.+||..
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~~~--------------~~~~~k~~~~v-~~s~~~v~~~l~D~~~~~~W~~~ 58 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVEGS--------------PLREFRGEVRL-KAAADDVVKVLRDANAFRQWMPD 58 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCTTC--------------SSCEEEEEEEE-SSCHHHHHHHHHCGGGGGGTSTT
T ss_pred CCCEEEEc--CCCEEEEEEeCCCC--------------CeEEEEEEEEE-ECCHHHHHHHHHhHHHhhhHHHh
Confidence 57987652 46899998875311 22345566777 7999999999997 89999974
No 128
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.01 E-value=0.29 Score=41.77 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=64.0
Q ss_pred HHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCC
Q 003250 722 KNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTM 801 (836)
Q Consensus 722 ~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~ 801 (836)
..|=+.+++|+..+.+ =.+.|.|++|.+||.++.+++.+.+...-..+... ....+.++.+.|-.....-+++...
T Consensus 11 ~il~~~~~~i~~~D~~--g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (115)
T 3b33_A 11 AILNNMVTATLILDDG--LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTFVVD 86 (115)
T ss_dssp HHHHHCSSEEEEECTT--CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEEEET
T ss_pred HHHhhcCceEEEECCC--CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEEecC
Confidence 4555789999888764 47999999999999999999998876654433321 1234555666553211112333356
Q ss_pred CCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 802 GRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 802 Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
|++++++ ..+-.+.| +|. .|.-++|.+
T Consensus 87 g~~~~~~-~~~~pi~~--~g~-~~~l~~~~D 113 (115)
T 3b33_A 87 GRPLMLE-VTVSPITW--QRQ-LMLLVEMRK 113 (115)
T ss_dssp TEEEEEE-EEEEEEEE--TTE-EEEEEEEEE
T ss_pred CCEEEEE-EEEEEeec--CCc-eEEEEEEEe
Confidence 8877664 33444444 354 566666643
No 129
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=92.88 E-value=0.21 Score=42.15 Aligned_cols=104 Identities=9% Similarity=-0.062 Sum_probs=68.6
Q ss_pred hhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhc--CcccccCCcccHHHHHHHHHHHHHhCCccCCCeeE-EcC
Q 003250 724 LWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQD--ITLDKIFDESGRKALCADFAKLMQQGFTYLPAGIC-MST 800 (836)
Q Consensus 724 l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~--lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvR-iss 800 (836)
+=+.+++|...+. +-.+.|.|.++.+||+++-+++.+ ..+.....+..++.....+.++.+.|-.... -+| ..+
T Consensus 13 ~~~~~~~i~~~d~--~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-e~~~~~~ 89 (125)
T 3nja_A 13 ESDAGIGSWVLHM--ESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDV-EYRIVRP 89 (125)
T ss_dssp ----CCEEEEEET--TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEE-EEEEECT
T ss_pred HHhCCeeEEEEEc--CCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceE-EEEEECC
Confidence 3356666666554 456889999999999999888876 2233334566677777778888877653222 233 356
Q ss_pred CCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 801 MGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 801 ~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
.|+.++++-... -+.| ++|...+...++.+
T Consensus 90 ~g~~~~~~~~~~-~~~~-~~g~~~~~~g~~~D 119 (125)
T 3nja_A 90 DGQVRELLERNH-IQRQ-ASGQVDHLWGTVID 119 (125)
T ss_dssp TSCEEEEEEEEE-EEEC-TTSCEEEEEEEEEE
T ss_pred CCCEEEEEEeeE-EEEC-CCCCEEEEEEEEEe
Confidence 788888865443 5678 88988887776654
No 130
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=92.28 E-value=4.8 Score=40.51 Aligned_cols=146 Identities=11% Similarity=0.115 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEEEEeeecccccCChhHHH-H
Q 003250 386 RTFSQRLSRGFNDAVNGFNDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGILCAKASMLLQNVPPALLV-R 464 (836)
Q Consensus 386 lkLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL~A~tS~wL~pvpp~~lf-~ 464 (836)
.+.++.....|-.-+. ..++|..... ..++++|..+.... .|.+. ++...+ ++||+.|| +
T Consensus 24 ~~~~~~a~~~~~~~l~--~~~~W~~~~~-~~~g~~vy~~~~~~-------------~g~~~--k~~~~v-~~~~~~v~~~ 84 (229)
T 1em2_A 24 IRQGKEATAVVDQILA--QEENWKFEKN-NEYGDTVYTIEVPF-------------HGKTF--ILKTFL-PCPAELVYQE 84 (229)
T ss_dssp HHHHHHHHHHHHHHHT--TGGGCEEEEE-CTTCCEEEEEEETT-------------TEEEE--EEEEEE-SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--CCCCCEEEEe-cCCCCEEEEEecCC-------------CCceE--EEEEEe-cCCHHHHHHH
Confidence 3344444433333332 3468987642 23567887765421 12233 444556 89999999 8
Q ss_pred HHhh--hhhcccccccchhhhhhhhccccCCCCCCCCCCCccceEeeccccCCCCceEEEEEeccCCCcccccccCCceE
Q 003250 465 FLRE--HRSEWADFNVDAYSAASLKAGSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHSLAQEDAFVSRDIH 542 (836)
Q Consensus 465 FLRd--~RseWd~l~~d~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~l 542 (836)
+|.| .|.+||..-. + .+++-.|. ....| +..+... .-..-+-+||.+
T Consensus 85 ~~~d~~~r~~Wd~~~~---------~---------------~~vle~~~----~~t~I-~~~~~~p--~~~~~~~~RDfv 133 (229)
T 1em2_A 85 VILQPERMVLWNKTVT---------A---------------CQILQRVE----DNTLI-SYDVSAG--AAGGVVSPRDFV 133 (229)
T ss_dssp TTTCHHHHTTTCTTEE---------E---------------EEEEEEET----TTEEE-EEEEECC--BTTTTBCCEEEE
T ss_pred HHhCccchhhcccccc---------e---------------EEEEEecC----CCeEE-EEEEecC--cCCCCcCCCeeE
Confidence 8876 8999997511 1 34444442 22223 2222111 001124567888
Q ss_pred EEeeecccCCCCCCceeEEEEeeccCCC----CCC--CcccCCccEEecC
Q 003250 543 LLQICSGVDENAVGACSELVFAPIDEMF----PDD--GPLLPSGFRIIPL 586 (836)
Q Consensus 543 iLQe~s~~De~~~Gs~s~vVyAPvD~~d----s~~--v~LLPSGF~I~P~ 586 (836)
++.-. ..++ +. -+++...|+-+. +.+ +.++++||.|-|+
T Consensus 134 ~~r~~-~~~~---~~-~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~ 178 (229)
T 1em2_A 134 NVRRI-ERRR---DR-YLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKS 178 (229)
T ss_dssp EEEEE-EECS---SE-EEEEEEECCCTTSCCCTTSEECEECSEEEEEEEC
T ss_pred EEEEE-EEcC---CE-EEEEEecccCCCCCCCCCCEeeeecccEEEEEec
Confidence 87764 3442 22 356666776542 222 4468899999983
No 131
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=92.19 E-value=0.79 Score=40.93 Aligned_cols=106 Identities=13% Similarity=-0.006 Sum_probs=66.8
Q ss_pred HHHHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCcc----CCCe
Q 003250 720 VLKNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTY----LPAG 795 (836)
Q Consensus 720 ~~~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~----~y~G 795 (836)
+...+=+.+++|+..+. +=.+.|.|.++.++|+++-.++.+.+......+..+......+..+...+... ...-
T Consensus 42 ~~~~l~~~~~~i~~~d~--~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (167)
T 1v9y_A 42 FFPALEQNMMGAVLINE--NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSREL 119 (167)
T ss_dssp HHHHHHTCSSEEEEECT--TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CEE
T ss_pred HHHHHHhCCCCEEEECC--CCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccceEE
Confidence 33445577888887664 55899999999999999999999998887777666555556666666655321 1122
Q ss_pred eEEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEec
Q 003250 796 ICMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFI 831 (836)
Q Consensus 796 vRiss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~ 831 (836)
......|+.++++-... .+ + ++|... ...+|.
T Consensus 120 ~~~~~~g~~~~~~~~~~-~~-~-~~g~~~-~~~~~~ 151 (167)
T 1v9y_A 120 QLEKKDGSKIWTRFALS-KV-S-AEGKVY-YLALVR 151 (167)
T ss_dssp EEECTTSCEEEEEEEEE-EE-E-ETTEEE-EEEEEE
T ss_pred EEEcCCCcEEEEEEEEE-EE-e-cCCCEE-EEEEEe
Confidence 23466788887753322 23 5 556543 444443
No 132
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=91.18 E-value=0.68 Score=39.96 Aligned_cols=84 Identities=14% Similarity=0.018 Sum_probs=49.0
Q ss_pred HHHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhh--cCcccccCCcccHHHHHHHHHHHHHhCCccCCCee
Q 003250 720 VLKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQ--DITLDKIFDESGRKALCADFAKLMQQGFTYLPAGI 796 (836)
Q Consensus 720 ~~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~--~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~Gv 796 (836)
.++.++ +.|++|+..+. +=.+.|.|+++.+||.++-+++. +.+...-.. .+......+.+....+ ...+...
T Consensus 18 ~~~~l~e~~~~~i~~~d~--~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~e~~ 92 (126)
T 3bwl_A 18 RLEALFENSPDMIDVLDA--DGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFSVDE-RRKFEGL 92 (126)
T ss_dssp HHHHHHHHCSSEEEEECT--TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCCTTC-EEEEEEE
T ss_pred HHHHHHhhCCcEEEEEcC--CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHhcCC-CcceEEE
Confidence 344444 67888887664 56799999999999999999994 444322222 2222222221111111 1111223
Q ss_pred EEcCCCCeeEEc
Q 003250 797 CMSTMGRHVSYE 808 (836)
Q Consensus 797 Riss~Grrf~ie 808 (836)
...+.|+.++++
T Consensus 93 ~~~~dG~~~~~~ 104 (126)
T 3bwl_A 93 YERRDGSTMSVE 104 (126)
T ss_dssp EECTTSCEEEEE
T ss_pred EEeCCCCEEEEE
Confidence 357899999886
No 133
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=90.96 E-value=0.097 Score=45.10 Aligned_cols=83 Identities=19% Similarity=0.209 Sum_probs=50.9
Q ss_pred CCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHH-hCCccCCCe--eE-EcCCC
Q 003250 727 HSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQ-QGFTYLPAG--IC-MSTMG 802 (836)
Q Consensus 727 ~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~-qGy~~~y~G--vR-iss~G 802 (836)
.+++|+..+.+ +=.+.|+|+||.+||.++-+|+.+.+...-..+..++....+..+... .|......+ ++ +.+.|
T Consensus 7 ~~~~i~~~d~~-~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG 85 (114)
T 1ll8_A 7 FNKAIFTVDAK-TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSG 85 (114)
T ss_dssp TTCEEEEEETT-TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTC
T ss_pred CCceEEEEECC-CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEecCC
Confidence 34677766643 047999999999999999999999987665555443332222221111 222111112 33 47889
Q ss_pred CeeEEcCe
Q 003250 803 RHVSYEQA 810 (836)
Q Consensus 803 rrf~ie~A 810 (836)
+.|+++-.
T Consensus 86 ~~~~v~~~ 93 (114)
T 1ll8_A 86 EKIPVSVW 93 (114)
T ss_dssp CCEEEECC
T ss_pred CEEEEEEE
Confidence 99988643
No 134
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=90.79 E-value=2.4 Score=33.05 Aligned_cols=93 Identities=6% Similarity=-0.047 Sum_probs=54.9
Q ss_pred CCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEE-cCCCCeeE
Q 003250 728 SDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICM-STMGRHVS 806 (836)
Q Consensus 728 ~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRi-ss~Grrf~ 806 (836)
+++|+..+. +=.+.|.|+++.+||+++-+++.+.+.... +.. .+....+.++.+.|... -++. ...++ +
T Consensus 2 ~~~i~~~d~--~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~ 71 (96)
T 3a0s_A 2 ETAIITLSK--DGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDF-EEIGSVAESVFENKEPV---FLNFYKFGER--Y 71 (96)
T ss_dssp CCEEEEEET--TSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTC-HHHHHHHHHHHHHTCCE---EEEEEEETTE--E
T ss_pred CceEEEEcC--CCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cch-HHHHHHHHHHhccCCeE---EEEEEcCCcE--E
Confidence 455665554 457899999999999999999998876654 222 23334455555555321 1222 22333 3
Q ss_pred EcCeEEeEeecCCCCc-eEEEEEEecC
Q 003250 807 YEQAVAWKVLAPEDNT-VHCLAFSFIN 832 (836)
Q Consensus 807 ie~A~vW~v~d~~~g~-~~gqAa~f~~ 832 (836)
+ ...+-.+.| ++|. ..|...+|.+
T Consensus 72 ~-~~~~~p~~~-~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 72 F-NIRFSPFRN-AKTQLLEGVIITIDD 96 (96)
T ss_dssp E-EEEEEEEEC-TTTCCEEEEEEEEEC
T ss_pred E-EEEEEEeEc-CCCCeeeEEEEEecC
Confidence 3 234445667 6554 5677766653
No 135
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=90.72 E-value=1.3 Score=38.86 Aligned_cols=98 Identities=15% Similarity=0.068 Sum_probs=63.9
Q ss_pred HHHhhcCCCceeccCCCCCceeecccHHHHHhhc------------CCHHHhhcCcccccCCcccHHHHHHHHHHHHHhC
Q 003250 721 LKNLWQHSDAILCCSLKSMPVFIFANQAGLDMLE------------TTLVALQDITLDKIFDESGRKALCADFAKLMQQG 788 (836)
Q Consensus 721 ~~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E------------~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qG 788 (836)
..+|-+.+++|+..+. +=..+|.|+||.+||. ++-+++.+.+...-...+ +... .+.+..
T Consensus 8 ~~il~~~~~gviv~D~--~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~--~~~~----~~~~~~ 79 (121)
T 4hi4_A 8 ASALDNVSANVMIADN--DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP--AHQR----HLLANL 79 (121)
T ss_dssp HHHHTTSSSEEEEEET--TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSH--HHHH----HHHHHC
T ss_pred HHHHhcCCccEEEEcC--CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCH--HHHH----HHHhCc
Confidence 3456677999999886 5589999999999997 566777777765544322 1111 223322
Q ss_pred CccCCCeeEEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 789 FTYLPAGICMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 789 y~~~y~GvRiss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
- .+....+.-.|+.|. ..+--+.| ++|...|.-++|.+
T Consensus 80 ~--~~~~~~~~~~~~~~~---~~~~pi~~-~~g~~~g~v~~~~D 117 (121)
T 4hi4_A 80 T--GVHKAELNLGGRRFS---LDVVPVFN-DANARLGSAVQWTD 117 (121)
T ss_dssp S--SCEEEEEEETTEEEE---EEEEEEEC-TTSCEEEEEEEEEE
T ss_pred C--CCcEEEEEECCEEEE---EEEEEEEC-CCCCEEEEEEEEEE
Confidence 1 112334445676664 35556778 89999999888875
No 136
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=90.47 E-value=0.15 Score=46.93 Aligned_cols=89 Identities=12% Similarity=0.123 Sum_probs=56.6
Q ss_pred HHHHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhC------CccCC
Q 003250 720 VLKNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQG------FTYLP 793 (836)
Q Consensus 720 ~~~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qG------y~~~y 793 (836)
+...|=+.+++|+..+. +=.+.|+|.||.+||.++-+++.+.+...-..+..++.....+.+..+.| +....
T Consensus 9 l~~i~~~~~d~i~~~D~--~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (129)
T 3mfx_A 9 IELFIQHLTEAMILVNA--NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHPA 86 (129)
T ss_dssp HHHHHTTCSSEEEEEET--TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEEE
T ss_pred HHHHHhcCCceEEEECC--CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCCc
Confidence 33455578899998876 45899999999999999999999998766565555443333333322211 10000
Q ss_pred CeeE-EcCCCCeeEEcCe
Q 003250 794 AGIC-MSTMGRHVSYEQA 810 (836)
Q Consensus 794 ~GvR-iss~Grrf~ie~A 810 (836)
.-++ +.+.|+.|+++-.
T Consensus 87 ~E~~~~rkdG~~~~vels 104 (129)
T 3mfx_A 87 QETTLICASGKAKDVELS 104 (129)
T ss_dssp EEEEEECTTSCEEEEEEE
T ss_pred eEEEEEcCCCCEEEEEEE
Confidence 1123 4678999998743
No 137
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=90.37 E-value=0.45 Score=40.02 Aligned_cols=108 Identities=11% Similarity=0.014 Sum_probs=69.8
Q ss_pred HHHHhh-cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcc--cccCCcccHHHHHHHHHHHHHhCCccCCCee
Q 003250 720 VLKNLW-QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITL--DKIFDESGRKALCADFAKLMQQGFTYLPAGI 796 (836)
Q Consensus 720 ~~~~l~-~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lps--r~tae~~~r~~r~~~l~~v~~qGy~~~y~Gv 796 (836)
.++.+. +.|++|..++ .+-.++|.|.++.+++.++-+++.+.+. .....|..++.....+.++.+.|-.....--
T Consensus 5 ~~~~l~~~~~~~i~~~d--~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e~r 82 (118)
T 3icy_A 5 ELQALVDNIPAAIYHLD--VSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLVYR 82 (118)
T ss_dssp HHHHHHTTCCCCCEEEC--TTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEEEE
T ss_pred HHHHHHhcCCceEEEEE--cCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 344444 5566665554 4667889999999999999888876553 2234566677777777777776643222222
Q ss_pred EEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEec
Q 003250 797 CMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFI 831 (836)
Q Consensus 797 Riss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~ 831 (836)
-+.+.|+..|++- ..=-+.| ++|...+...++.
T Consensus 83 ~~~~~g~~~w~~~-~~~~~~~-~~g~~~~~~g~~~ 115 (118)
T 3icy_A 83 IVTPEGKLHWIED-HMRSSFS-DDGLFSGIDGILC 115 (118)
T ss_dssp EECTTCCEEEEEE-EEEEEEC-TTSCEEEEEEEEE
T ss_pred EECCCCCEEEEEE-EEEEEEC-CCCCEEEEEEEEE
Confidence 2367788887754 3334667 8898876655554
No 138
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=88.37 E-value=0.48 Score=41.40 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=49.6
Q ss_pred hhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCC
Q 003250 724 LWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGF 789 (836)
Q Consensus 724 l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy 789 (836)
|=+.|++|+..+. +=.+.|.|+++.++|.++-+++.+.+...-.++..+......+.++++.|-
T Consensus 18 l~~~~~~i~~~D~--~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (118)
T 3fg8_A 18 YFQGGLGFMALDE--DLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGR 81 (118)
T ss_dssp SSCTTCEEEEECT--TCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCC
T ss_pred HhhCCceEEEECC--CCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCC
Confidence 3356788877664 568999999999999999999999987766655555556667778887664
No 139
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=88.18 E-value=1.1 Score=38.22 Aligned_cols=90 Identities=11% Similarity=0.026 Sum_probs=60.5
Q ss_pred CceeecccHHHHHhhcCCHHHhhcCc-ccccCCcccHHHHHHHHHHHHHhCCccCCCeeE-EcCCCCeeEEcCeEEeEee
Q 003250 739 MPVFIFANQAGLDMLETTLVALQDIT-LDKIFDESGRKALCADFAKLMQQGFTYLPAGIC-MSTMGRHVSYEQAVAWKVL 816 (836)
Q Consensus 739 dP~f~yaN~aal~l~E~~w~~l~~lp-sr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvR-iss~Grrf~ie~A~vW~v~ 816 (836)
+-.|.|.|.+..+||.++-+++.+.. +..-..|..|+.-...+.++++.|-.... =.| +.+.|+..|++- .+--+.
T Consensus 13 ~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~-e~r~~~~dG~~~w~~~-~~~~~~ 90 (115)
T 3h9w_A 13 TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEA-DYRALHRDGHYVWIRD-VVHVVR 90 (115)
T ss_dssp TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEE-EEEEECTTSCEEEEEE-EEEEEE
T ss_pred CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccE-EEEEEcCCCCEEEEEE-EEEEEE
Confidence 34689999999999999999988721 22334566666666777777776642111 123 367888888854 344457
Q ss_pred cCCCCceEEEEEEec
Q 003250 817 APEDNTVHCLAFSFI 831 (836)
Q Consensus 817 d~~~g~~~gqAa~f~ 831 (836)
| ++|...+...+..
T Consensus 91 d-~~G~~~~~~G~~~ 104 (115)
T 3h9w_A 91 D-DSGEVEALIGFMF 104 (115)
T ss_dssp C-TTSCEEEEEEEEE
T ss_pred C-CCCCEEEEEEEEe
Confidence 8 8998877665544
No 140
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=82.88 E-value=2.4 Score=37.72 Aligned_cols=47 Identities=30% Similarity=0.358 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 82 RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 82 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
|+|.|+++....+.... ..|.++|..|..++.+|..|...|+.-|..
T Consensus 29 rSR~krk~r~~e~~~r~-------~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKV-------LELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444444 444455555555555666666666655544
No 141
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=81.80 E-value=4.4 Score=43.80 Aligned_cols=92 Identities=8% Similarity=-0.005 Sum_probs=67.7
Q ss_pred CceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCeeEEcCeEEeEeecC
Q 003250 739 MPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVSYEQAVAWKVLAP 818 (836)
Q Consensus 739 dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf~ie~A~vW~v~d~ 818 (836)
|=.|+|.|.++.++++++-+||.+.+...-.-|.++..-...+.+++++|-.....==.+.+.|.-+|++ +..--+.|+
T Consensus 260 dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~-~~~~~v~~~ 338 (361)
T 4f3l_A 260 EWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQ-THYYITYHQ 338 (361)
T ss_dssp TSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEE-EEEEEEECT
T ss_pred CceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEE-EEEEEEEcC
Confidence 6689999999999999999999999887777777777777778888888854322222458889999985 333344562
Q ss_pred CCCceEEEEEEec
Q 003250 819 EDNTVHCLAFSFI 831 (836)
Q Consensus 819 ~~g~~~gqAa~f~ 831 (836)
.+|...+.-.+..
T Consensus 339 ~~g~~~~iv~~~~ 351 (361)
T 4f3l_A 339 WNSRPEFIVCTHT 351 (361)
T ss_dssp TTCCEEEEEEEEE
T ss_pred CCCCeeEEEEEEE
Confidence 2688777655543
No 142
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=81.56 E-value=3.2 Score=34.52 Aligned_cols=45 Identities=31% Similarity=0.434 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 82 RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 82 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
|++.|++.....+.. +.+.|..+|..|..++..|+.|++.|++-+
T Consensus 16 R~R~KKk~~~~~le~-------~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 16 RYRQKKRAEQEALTG-------ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544444 455566666666666677777777777654
No 143
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=81.40 E-value=3 Score=36.32 Aligned_cols=46 Identities=30% Similarity=0.368 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 82 RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 82 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
|++.|+++....+.. ....|..+|..|..++.+|..|...|+.-|-
T Consensus 29 rSR~krk~r~~e~~~-------r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 29 KSRDKAKMRNLETQH-------KVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444433 3445555666666666677777777776554
No 144
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=81.39 E-value=4 Score=41.08 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=64.8
Q ss_pred hhCCCccCCCCCCchhHHHHhhcCCCceeccCCCCCceeecccHHHHHhh------------cCCHHHhhcCcccccCCc
Q 003250 704 HLGAELLRSDSVGGDSVLKNLWQHSDAILCCSLKSMPVFIFANQAGLDML------------ETTLVALQDITLDKIFDE 771 (836)
Q Consensus 704 ~~G~~L~~~~~~~~~~~~~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~------------E~~w~~l~~lpsr~tae~ 771 (836)
+....|++...+ ...+..+|=+.+++|+..+. +=..+|+|+|+.+|| +++-+++.+-+.+.-...
T Consensus 9 ~~~~~~~~~~~e-~~~l~~iLd~~~~~vii~D~--~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~ 85 (233)
T 3vol_A 9 HHSSGLVPRGSH-MARIKSALDNVSANVMIADN--DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN 85 (233)
T ss_dssp ---------CTH-HHHHHHHHTTSSSEEEEEET--TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS
T ss_pred cccccCCchHHH-HHHHHHHHhcCCCcEEEECC--CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC
Confidence 344456653221 12333445556999988775 568999999999999 566677777766554433
Q ss_pred ccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCeeEEcCeEEeEeecCCCCceEEEEEEecCc
Q 003250 772 SGRKALCADFAKLMQQGFTYLPAGICMSTMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFINW 833 (836)
Q Consensus 772 ~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~W 833 (836)
+. ....++... + + .....+...|+.| ..++=.+.| ++|.+.|.-..|.+-
T Consensus 86 ~~--~~~~~~~~~-~-~----~~~~~~~~~g~~~---~~~~~Pi~d-~~G~~~g~v~~~~DI 135 (233)
T 3vol_A 86 PA--HQRHLLANL-T-G----VHKAELNLGGRRF---SLDVVPVFN-DANERLGSAVQWTDR 135 (233)
T ss_dssp HH--HHHHHHHTC-C-S----CEEEEEEETTEEE---EEEEEEEEC-TTCCEEEEEEEEEEC
T ss_pred HH--HHHHHHHhc-c-c----ceeEEEEECCEEE---EEEEEEEEC-CCCCEEEEEEEEehh
Confidence 21 111222211 1 1 1223344456644 456677889 999999988888653
No 145
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=78.90 E-value=1.9 Score=38.48 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=50.2
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeE-EcCCCCe
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGIC-MSTMGRH 804 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvR-iss~Grr 804 (836)
+.++.|+.++ .+=.|.|.|.++.++|.++=+|+.+.+..--..|..++...+.+ .+++-. ...-.| +.+.|+.
T Consensus 7 ~~~d~i~v~d--~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~---~~~~~~-~~~e~r~~~kdG~~ 80 (111)
T 2vlg_A 7 TKTDIHAVLA--SNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYF---YNEHHL-MPCTFRFIKKDHTI 80 (111)
T ss_dssp --CCEEEEEC--TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHH---HCSCCS-SCEEEEEECTTSCE
T ss_pred cCCCEEEEEc--CCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHH---hccCCC-ccEEEEEEcCCCCE
Confidence 4566677666 45689999999999999999999998864444555555444333 222211 011234 3688988
Q ss_pred eEEcC
Q 003250 805 VSYEQ 809 (836)
Q Consensus 805 f~ie~ 809 (836)
+|++-
T Consensus 81 ~wve~ 85 (111)
T 2vlg_A 81 VWVEA 85 (111)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88864
No 146
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.01 E-value=0.77 Score=39.25 Aligned_cols=43 Identities=19% Similarity=0.397 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeecccc
Q 003250 34 TAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQN 80 (836)
Q Consensus 34 T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQN 80 (836)
++.-.+.|+++|+..+.+.+..-..|+.+. +|+..|||-||-.
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~ks----kms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQAS----RLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHT----TCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHh----CCCHHHHHHHHHh
Confidence 344468999999999999999999999999 9999999999943
No 147
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=76.38 E-value=3.4 Score=48.34 Aligned_cols=107 Identities=12% Similarity=0.054 Sum_probs=74.3
Q ss_pred HHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCC
Q 003250 722 KNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTM 801 (836)
Q Consensus 722 ~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~ 801 (836)
..+=++++.|+..+. +-.++|.|++..+|+.++-+++.+.+......+..++.... +.+.+.+|-.....=.-..+.
T Consensus 522 ~lle~a~~~i~~~D~--~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~-i~~~l~~g~~~~~E~~~~~~d 598 (635)
T 4eho_A 522 SQVHASMQPVLITDA--EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRN-VAELIDHGRGWRGEVLLRGAG 598 (635)
T ss_dssp HHHHHCSSCCEEEET--TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHH-HHHHHHHCCCBCCCCEECCSS
T ss_pred HHHHhCCCcEEEECC--CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHH-HHHHHHcCCcEEEEEEEEccC
Confidence 344567777877765 67899999999999999999999998766655555444444 445555553322221223577
Q ss_pred CCeeEEcCeEEeEeecCCCCceEEEEEEecCc
Q 003250 802 GRHVSYEQAVAWKVLAPEDNTVHCLAFSFINW 833 (836)
Q Consensus 802 Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~W 833 (836)
|+.++++-.+ =-+.| ++|++.|..++|.+=
T Consensus 599 G~~~~~~~~~-~pv~d-~~G~v~g~v~i~~DI 628 (635)
T 4eho_A 599 NRPLPLAVRA-DPVTR-TEDQSLGFVLIFSDA 628 (635)
T ss_dssp SSCEECCCCE-EEECS-TTSSCCEEEECCCCC
T ss_pred CcEEEEEEEE-EEEEC-CCCCEEEEEEEEEeC
Confidence 8888876433 25789 999999999888764
No 148
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=76.23 E-value=5.9 Score=32.84 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=19.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
|..+-+.+..+|..|..++..|+.|...|+..|
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555566666666666666554
No 149
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=75.02 E-value=10 Score=31.02 Aligned_cols=35 Identities=31% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 99 RKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 99 ~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
..|....+.+..+|..|..+++.|+.|++.|++.|
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33555566777777777788888888888888765
No 150
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.63 E-value=6.9 Score=32.07 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003250 82 RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVC 124 (836)
Q Consensus 82 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ 124 (836)
|++.|++.....++.....+..+|..|..+...|..++.+|+.
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777777778888888888888888887777764
No 151
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=70.67 E-value=25 Score=38.08 Aligned_cols=91 Identities=12% Similarity=0.167 Sum_probs=65.8
Q ss_pred eeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccC---CC-ee-EEcCCCCee
Q 003250 731 ILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYL---PA-GI-CMSTMGRHV 805 (836)
Q Consensus 731 vl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~---y~-Gv-Riss~Grrf 805 (836)
|.-|+. |=.|+|.|.++..+++++-+||.+.+..--.-|.++....+.+.+++++|-... .+ =. .+.+.|.-+
T Consensus 157 i~r~~~--dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG~~v 234 (339)
T 3rty_A 157 AIRHTA--TGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYV 234 (339)
T ss_dssp EEEEET--TCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTSCEE
T ss_pred EEEECC--CCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCCCEE
Confidence 444443 668999999999999999999999988777778888887888888888775421 01 12 358889988
Q ss_pred EEcCeEEeE-eecCCCCceEE
Q 003250 806 SYEQAVAWK-VLAPEDNTVHC 825 (836)
Q Consensus 806 ~ie~A~vW~-v~d~~~g~~~g 825 (836)
|++ +-|+ +.|+..+....
T Consensus 235 Wle--t~~~~~~np~s~~~~~ 253 (339)
T 3rty_A 235 LLE--TEWTSFVNPWSRKLEF 253 (339)
T ss_dssp EEE--EEEEEEECTTTCSEEE
T ss_pred EEE--EEEEEEECCCCCCeeE
Confidence 986 3454 45644455443
No 152
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=70.05 E-value=5.5 Score=32.98 Aligned_cols=94 Identities=9% Similarity=0.024 Sum_probs=55.6
Q ss_pred HhhcCCCceeccCCCCCceeecccHHHHHhhcC---CHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEc
Q 003250 723 NLWQHSDAILCCSLKSMPVFIFANQAGLDMLET---TLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMS 799 (836)
Q Consensus 723 ~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~---~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRis 799 (836)
.|=+.+++|+..+. +=.+.|+|+++.++|.+ +-+++.+.+...-..+.. +.++.+.|-.. ....+.
T Consensus 20 il~~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~ 88 (118)
T 2w0n_A 20 MLQSIKEGVVAVDD--RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTPR--RDEEIT 88 (118)
T ss_dssp HHHCCCCCCEEEBT--TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCCC--CCCCEE
T ss_pred HHhhccccEEEECC--CCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCcee--ccEEEE
Confidence 34467888888775 45789999999999996 778888877665544321 44555555422 122233
Q ss_pred CCCCeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 800 TMGRHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 800 s~Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
..|+.+.+.- -.+. ++|...|...+|.+
T Consensus 89 ~~~~~~~~~~---~p~~--~~g~~~g~v~~~~D 116 (118)
T 2w0n_A 89 IKDRLLLINT---VPVR--SNGVIIGAISTFRD 116 (118)
T ss_dssp SSSCEECCCE---ECCC--CSSCCCCEEECCCC
T ss_pred ECCEEEEEee---ceee--eCCEEEEEEEEEEe
Confidence 4565443321 1222 34666665555543
No 153
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=67.60 E-value=5.8 Score=37.35 Aligned_cols=86 Identities=15% Similarity=0.160 Sum_probs=54.1
Q ss_pred HhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCC
Q 003250 723 NLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMG 802 (836)
Q Consensus 723 ~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~G 802 (836)
.|=+.+++|+..+. +=.+.|+|++|.+||.++-+++.+.|...-..+.. +.++.+.|-. ...+..+.-.|
T Consensus 85 il~~~~~gvi~~D~--~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~g 154 (190)
T 2jhe_A 85 LLEALPEPVLSVDM--KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN-------FLRWLESEPQ-DSHNEHVVING 154 (190)
T ss_dssp HHHHCSSCEEEECT--TCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC-------HHHHHHTCCC-SCEEEEEEETT
T ss_pred HHHhCCCcEEEEcC--CCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC-------HHHHHhcCCC-CCcceEEEECC
Confidence 33467888888776 55899999999999999999999988776554432 2234444421 11223333467
Q ss_pred CeeEEcCeEEeEeecCCCCc
Q 003250 803 RHVSYEQAVAWKVLAPEDNT 822 (836)
Q Consensus 803 rrf~ie~A~vW~v~d~~~g~ 822 (836)
+.|.++ +-.+.| ++|.
T Consensus 155 ~~~~~~---~~pi~~-~~~~ 170 (190)
T 2jhe_A 155 QNFLME---ITPVYL-QDEN 170 (190)
T ss_dssp EEEEEE---EEEETT-TTEE
T ss_pred eEEEEE---EEEEEe-cCCC
Confidence 766543 233444 4454
No 154
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.97 E-value=9 Score=32.68 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHH
Q 003250 86 KQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGY 128 (836)
Q Consensus 86 Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~ 128 (836)
++.+....|...-..+...+..+..++..|..++..|..||..
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444555555555554445555555443
No 155
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=66.65 E-value=14 Score=30.45 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=28.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 003250 99 RKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQ 132 (836)
Q Consensus 99 ~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~e 132 (836)
..|..-|..+.+|.+.+++.++.|..||..||.+
T Consensus 30 QQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~q 63 (63)
T 2w6a_A 30 QQLMKVNSSLSDELRKLQREIHKLQAENLQLRQP 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhccC
Confidence 3466678889999999999999999999999853
No 156
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=66.29 E-value=14 Score=33.50 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=24.3
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 96 TVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 96 ~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
.+|..++......-...+.|+.++.+|+.||.+|++|-+
T Consensus 51 ~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 51 DENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443344444556677788888888888887754
No 157
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.59 E-value=13 Score=32.71 Aligned_cols=43 Identities=30% Similarity=0.263 Sum_probs=31.3
Q ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 92 SRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 92 ~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
..++-+.+.|+..|..+.+++..+......|+.||++|++|..
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3455566667777777777777777766778888888888865
No 158
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=64.06 E-value=29 Score=30.68 Aligned_cols=102 Identities=8% Similarity=-0.040 Sum_probs=63.1
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCc--ccccCCcccHHHHHHHHHHHHHhCCccCCCeeE-EcCCC
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDIT--LDKIFDESGRKALCADFAKLMQQGFTYLPAGIC-MSTMG 802 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lp--sr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvR-iss~G 802 (836)
..++.|.-.+. +-...|.|.+..+||+++-.++.+.. +....-|..|..-...+.++.+.|-.+.. =.| +.+.|
T Consensus 17 ~~~~g~w~~d~--~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~-e~r~~~~~G 93 (142)
T 3mr0_A 17 GASAGLWDWNP--KTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDV-EYRVRTRSG 93 (142)
T ss_dssp HTTCEEEEECT--TTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEE-EEEEECTTS
T ss_pred hCCcEEEEEEc--CCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEE-EEEEECCCC
Confidence 45555544433 34467999999999999988876522 33344566677777777777776532211 123 35678
Q ss_pred CeeEEcCeEEeEeecCCCCceEEEEEEecC
Q 003250 803 RHVSYEQAVAWKVLAPEDNTVHCLAFSFIN 832 (836)
Q Consensus 803 rrf~ie~A~vW~v~d~~~g~~~gqAa~f~~ 832 (836)
...|++. ..--+.| ++|...+...++.+
T Consensus 94 ~~~w~~~-~~~~~~d-~~g~~~~~~G~~~D 121 (142)
T 3mr0_A 94 DFRWIQS-RGQALWN-SAGEPYRMVGWIMD 121 (142)
T ss_dssp CEEEEEE-EEEEEEC-TTSCEEEEEEEEEE
T ss_pred CEEEEEE-EEEEEEC-CCCCEEEEEEEEEc
Confidence 8777753 3334568 88988776655543
No 159
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=63.77 E-value=11 Score=39.08 Aligned_cols=95 Identities=7% Similarity=-0.099 Sum_probs=58.1
Q ss_pred hcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCC---ccCCCeeEEcCC
Q 003250 725 WQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGF---TYLPAGICMSTM 801 (836)
Q Consensus 725 ~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy---~~~y~GvRiss~ 801 (836)
=+.|++|+..+. +=.++|+|+++.+||.++-+++.+.+...-.++ ++....+.++.+.|- ...+.+ .
T Consensus 15 ~~~~~~i~~~d~--~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~ 84 (349)
T 3a0r_A 15 ESLETAIITLSK--DGRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPVFLNFYKF-----G 84 (349)
T ss_dssp GGSSSEEEEEES--SSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCCEEECCCB-----T
T ss_pred hhhcCeEEEECC--CCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCceeeccccc-----C
Confidence 357888888765 568999999999999999999999877654322 233344555555442 111111 2
Q ss_pred CCeeEEcCeEEeEeecCCCCce-EEEEEEecCc
Q 003250 802 GRHVSYEQAVAWKVLAPEDNTV-HCLAFSFINW 833 (836)
Q Consensus 802 Grrf~ie~A~vW~v~d~~~g~~-~gqAa~f~~W 833 (836)
+|.|.+ .+-.+.| ++|.. .|...++.+-
T Consensus 85 ~~~~~~---~~~~~~~-~~~~~~~g~~~~~~Di 113 (349)
T 3a0r_A 85 ERYFNI---RFSPFRN-AKTQLLEGVIITIDDV 113 (349)
T ss_dssp TBCCEE---EEEEECC-TTTTSSCEEEEEEECC
T ss_pred ceEEEE---EEEEEEc-CCCceeeEEEEEEEec
Confidence 333332 3334556 55543 5766666553
No 160
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=63.57 E-value=8.3 Score=31.75 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=20.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
|...-..+..+|..|..++..|+.|+..|++.|
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666667777777777777777665
No 161
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=63.27 E-value=23 Score=29.26 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 105 NKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 105 n~~l~ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
...+..+.+.|..+-..|+.+...|+.|+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 162
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=59.33 E-value=14 Score=33.00 Aligned_cols=63 Identities=24% Similarity=0.198 Sum_probs=35.3
Q ss_pred CCCccceeeccccchhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 68 NIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 68 gL~~rQVKvWFQNRRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
||+..+|.-+=|-||+= |.+--...|+. +-..+...|..++..+..++++|+.||++++.|++
T Consensus 17 gls~eev~~lKq~RRtl-KNRgyAq~CR~---Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d 79 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTL-KNRGYAQSCRY---KRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERD 79 (90)
T ss_dssp TCCHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhh-hhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888877776666542 22222222221 12233455556666666677777777777766655
No 163
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=59.22 E-value=17 Score=29.88 Aligned_cols=41 Identities=29% Similarity=0.429 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 003250 82 RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQL 122 (836)
Q Consensus 82 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L 122 (836)
|++.|++.....+...-..+..+|..|..+...|..++.+|
T Consensus 15 k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 15 KSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444433
No 164
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=58.24 E-value=19 Score=34.46 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=70.9
Q ss_pred ceeeEEEeChhHHHHHhcCccchhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEE
Q 003250 214 RACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVC 293 (836)
Q Consensus 214 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVv 293 (836)
..+-+|.-.+.++-+.+-|.+.|-+.+|-+.-+.++..+.++ +.+++.+.-. ..++-|.-|+...-++.. + .
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~----~~~~~~~~~~--G~~~~~~s~~~~~~~~~~-i-~ 79 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGY----QVVRLHVDVA--GEINTWTSRRDLDPARRV-I-A 79 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTE----EEEEEEEEET--TEEEEEEEEEEEETTTTE-E-E
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCE----EEEEEEEecC--CEEEEEEEEEEEeCCCCE-E-E
Confidence 455667778999999999999999999987655555433232 2233332111 223334444433322222 1 1
Q ss_pred EeecCCCCCCCCCCCcccccceeecCccee-EeecCCCccEEEEEEeeeccccccccccccccc
Q 003250 294 ERSLSGSGAGPNPASAAQFVRAEMLPSGCL-IRPCDGGGSIIHIVDHLNLEAWSVPEVLRPLYE 356 (836)
Q Consensus 294 DvSld~~~~~~~~~~~~~~~r~~rlPSGcl-Iq~~~nG~skVtwVeH~e~d~~~vh~lyrpL~~ 356 (836)
-.+++. +++ ...+ .|.. +.+.++|+|+|+|.-++++....+..++.++..
T Consensus 80 ~~~~~~--~gp----f~~~-------~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~ 130 (172)
T 3tfz_A 80 YRQLET--API----VGHM-------SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLT 130 (172)
T ss_dssp EEEEEC--CTT----EEEE-------EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBC
T ss_pred EEEeeC--CCC----hhhc-------EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccC
Confidence 112211 011 0011 2332 566777899999999999988888888887763
No 165
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.76 E-value=39 Score=27.83 Aligned_cols=43 Identities=26% Similarity=0.379 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003250 82 RCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVC 124 (836)
Q Consensus 82 RaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ 124 (836)
|++.|++.....+......|..+|..|..+...|..++.+|+.
T Consensus 16 rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 16 KCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777788888888888888888887777764
No 166
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=56.72 E-value=29 Score=30.47 Aligned_cols=107 Identities=14% Similarity=0.097 Sum_probs=56.9
Q ss_pred eeeEEEeChhHHHHHhcCccchhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEEE
Q 003250 215 ACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVCE 294 (836)
Q Consensus 215 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 294 (836)
.+..|...+.++-+.|.|.+.|.+-+|.+.-+.+...+.+|. ...+.+--+ +.+.-+..++... +++.-++..
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~----~~~~~~~~~--g~~~~~~~~~~~~-~~~~~i~~~ 78 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGART----RSRWVAVAM--GKKVRWLEEEEWD-DENLRNRFF 78 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEE----EEEEEEEET--TEEEEEEEEEEEE-TTTTEEEEE
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCcc----EEEEEEEeC--CceEEEEEEEEEc-CCCcEEEEE
Confidence 345566788899999999999988888765444443332331 111222111 2233344555433 333322111
Q ss_pred eecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeeccc
Q 003250 295 RSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEA 344 (836)
Q Consensus 295 vSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~ 344 (836)
.+++ +. ..+.. -.-+.+.++| |+|+|..+.+...
T Consensus 79 -~~~g----~~----~~~~~------~~~~~~~~~g-T~v~~~~~~~~~~ 112 (147)
T 2d4r_A 79 -SPEG----DF----DRYEG------TWVFLPEGEG-TRVVLTLTYELTI 112 (147)
T ss_dssp -EEEE----SC----SEEEE------EEEEEECSSS-EEEEEEEEEECCC
T ss_pred -eccC----Ch----hheEE------EEEEEECCCC-cEEEEEEEEecCC
Confidence 2221 10 01111 2345677787 9999998888653
No 167
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=56.18 E-value=37 Score=37.00 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=62.9
Q ss_pred CceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCC---ccCCCeeEEcCCCCeeEEcCeEEeEe
Q 003250 739 MPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGF---TYLPAGICMSTMGRHVSYEQAVAWKV 815 (836)
Q Consensus 739 dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy---~~~y~GvRiss~Grrf~ie~A~vW~v 815 (836)
|=.|+|.|.++.++++++-+||.+.++---.-|.++..-...+.++++.|- ..-|+ -+.+.|.-+|++- ..--+
T Consensus 287 dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR--~~~kdG~~vWv~~-~~~~~ 363 (387)
T 4f3l_B 287 DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYK--FKIKDGSFITLRS-RWFSF 363 (387)
T ss_dssp TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEE--EECTTSCEEEEEE-EEEEE
T ss_pred CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEE--EEccCCCEEEEEE-EEEEE
Confidence 668999999999999999999999887666667777766677777765432 12222 2478899999963 33334
Q ss_pred ecCCCCceEEEEEEe
Q 003250 816 LAPEDNTVHCLAFSF 830 (836)
Q Consensus 816 ~d~~~g~~~gqAa~f 830 (836)
.|+.+|...+.-.+.
T Consensus 364 ~~~~~g~~~~ivg~~ 378 (387)
T 4f3l_B 364 MNPWTKEVEYIVSTN 378 (387)
T ss_dssp EETTTTEEEEEEEEE
T ss_pred ECCCCCCEEEEEEEE
Confidence 563468877765544
No 168
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=55.86 E-value=8.2 Score=40.32 Aligned_cols=38 Identities=26% Similarity=0.219 Sum_probs=24.6
Q ss_pred HHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 94 LQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 94 l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
+..+|+.|++++..++.++.+ .++|+.||++||+.|.-
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~----~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESE----VADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Confidence 345566666666665554433 35688999999998874
No 169
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=55.75 E-value=12 Score=38.21 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=39.2
Q ss_pred CCCCCcccccCCCccEEEEEecCCCCCCCCCCCCCCCCCCeEE-EEeeecccccCChhHHHHHHhh--hhhccccc
Q 003250 404 NDDGWSLMTCDGAEDVIIAVNSTKSLSTASNPTNSLAFLGGIL-CAKASMLLQNVPPALLVRFLRE--HRSEWADF 476 (836)
Q Consensus 404 ~~~~W~~l~~~g~~dVrv~~r~s~~~~g~~~~~~~~~~~g~VL-~A~tS~wL~pvpp~~lf~FLRd--~RseWd~l 476 (836)
.+.+|..... .++|+|..+...+. |.++ .-++..-+..++|+.||++|.| .|.+||..
T Consensus 45 ~~~~W~~~~~--~~gv~vy~~~~~~~-------------g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~ 105 (255)
T 2e3n_A 45 GDANWQLVVE--EGEMKVYRREVEEN-------------GIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETT 105 (255)
T ss_dssp TCTTEEEEEE--ETTEEEEEECCEET-------------TEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCS
T ss_pred CCCCcEEEEe--CCCEEEEEEEcCCC-------------CceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhh
Confidence 3568987753 46799998875421 1111 1233344546999999999997 89999975
No 170
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=54.60 E-value=16 Score=30.44 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=5.1
Q ss_pred HHHHHhHHHHHhh
Q 003250 121 QLVCENGYMKQQL 133 (836)
Q Consensus 121 ~L~~ENa~L~~el 133 (836)
.|..|.+.|++++
T Consensus 48 ~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 48 HLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 171
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.53 E-value=53 Score=29.07 Aligned_cols=37 Identities=16% Similarity=0.049 Sum_probs=18.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 99 RKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 99 ~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
++-+.....+..+...|+.+-.+|+.+.+.|+.|+..
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555555555555555555555554
No 172
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=48.12 E-value=46 Score=31.83 Aligned_cols=111 Identities=8% Similarity=0.059 Sum_probs=64.1
Q ss_pred ceeeEEEeChhHHHHHhcCccchhhhCCCceEeeeecCCCccHHHHHHHhhh-ccccccCCceeeEEeeeeeccCCcEEE
Q 003250 214 RACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAY-APTTLAPARDFWTLRYTTTLDNGSLVV 292 (836)
Q Consensus 214 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~-v~SPLVp~Re~~fLRyckq~~~G~waV 292 (836)
..+.+|.-.+.++-+.+-|.++|-+.+|-..-..++..+.++ +.+.+. ..+.- -.++-++.|+... .++.-+
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~~~----~~~rl~~~~~~~-G~~~~~ts~~~~d-~~~~~I- 78 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDK----VTFRLTMHPDAD-GKVWSWVSERVAD-PVTRTV- 78 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECSSE----EEEEEEECCCTT-SCCCEEEEEEEEE-TTTTEE-
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCCCE----EEEEEEEEeccC-ceEEEEEEEEEEc-CCCCEE-
Confidence 456677778999999999999999999977655555544222 222222 01111 1344455666433 233332
Q ss_pred EEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecccc
Q 003250 293 CERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAW 345 (836)
Q Consensus 293 vDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~ 345 (836)
+..+. .++| | +.+=...-+.+.++ +|+|+|.-+.++.+.
T Consensus 79 -~~~~~--~~gP-------f---~~l~g~W~f~p~~~-gt~V~~~~df~~~~~ 117 (159)
T 3tl1_A 79 -RAQRV--ETGP-------F---QYMNIVWEYAETAE-GTVMRWTQDFAMKPD 117 (159)
T ss_dssp -EEEES--SCTT-------E---EEEEEEEEEEEETT-EEEEEEEEEEEECTT
T ss_pred -EEEEc--cCCC-------h---hhccCEEEEEECCC-CEEEEEEEEEEecCC
Confidence 22211 1112 1 12223445677777 599999999998765
No 173
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=46.11 E-value=67 Score=27.85 Aligned_cols=35 Identities=14% Similarity=0.024 Sum_probs=17.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
-+.....+......|+.+-.+|+.+...|+.|+..
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555555555555555543
No 174
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=45.74 E-value=27 Score=25.90 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 107 LLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 107 ~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
.++.++...+.++.+|+-+|+.|.+|+-
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 4566777778888888888888888864
No 175
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=45.03 E-value=16 Score=29.16 Aligned_cols=22 Identities=45% Similarity=0.607 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhhc
Q 003250 113 DRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 113 ~~l~~~~~~L~~ENa~L~~el~ 134 (836)
+.|-.++..|+.||..||+||+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
No 176
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=44.03 E-value=24 Score=33.41 Aligned_cols=110 Identities=5% Similarity=0.077 Sum_probs=65.6
Q ss_pred ceeeEEEeChhHHHHHhcCccchhhhCCCceEeeeecCCCccHHHHHHHhhhccccccCCceeeEEeeeeeccCCcEEEE
Q 003250 214 RACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNAGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGSLVVC 293 (836)
Q Consensus 214 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVv 293 (836)
..+.+|.-.+.++-+.+.|.++|...+|..........| ....+.+++.+- -...|+-|..||...-+ +.-+..
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~~~~---~~~~~~a~l~vg--~~~~~~~~~s~~~~~~~-~~~I~~ 83 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDLGNN---AYRWEMEKVGVD--KHAIQSVYACTYHADKE-AGKITW 83 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEEEEEETT---EEEEEECCBSSG--GGCBCCEEEEEEEEETT-TTEEEE
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEEEEcCCC---ceEEEEEEEeee--eEEEEEEEEEEEEEcCC-CCEEEE
Confidence 346677788999999999999999999987665443322 100111223222 23347888888876543 333222
Q ss_pred EeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecc
Q 003250 294 ERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLE 343 (836)
Q Consensus 294 DvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d 343 (836)
+ ++++ +.. .... .-.-+.+.++|.|+|+|.-+.|..
T Consensus 84 ~-~~~g----~~~---~~l~------g~w~f~p~~~g~t~V~~~~~~e~~ 119 (161)
T 3p9v_A 84 S-PIKG----EGN---GVVS------GSWTLSAKGDNATAVKFQTSAELT 119 (161)
T ss_dssp E-ECTT----STT---EEEE------EEEEEEESSSSCEEEEEEEEEEEE
T ss_pred E-EecC----ccc---eeEE------EEEEEEECCCCeEEEEEEEEEEEc
Confidence 2 2232 110 0111 223457778888999999888876
No 177
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=42.60 E-value=42 Score=26.92 Aligned_cols=36 Identities=14% Similarity=0.134 Sum_probs=24.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
+...+..+.+.|.+|..-+++-+.|-..|++|++++
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666666666666667777777777777764
No 178
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=42.59 E-value=50 Score=25.49 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=26.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
|...-+.+...+.+|+..++-|..||+.||+-+.
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4445566667777888888999999999998653
No 179
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=42.56 E-value=5.1 Score=34.84 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=47.4
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHHHHHHhhHHHHHhhHHHHH
Q 003250 31 VRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLME 110 (836)
Q Consensus 31 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~~l~~~n~~l~~~n~~l~e 110 (836)
.+||.++....-..+... ......++|+.+ |+++..|.-|.+.-+.. ....... . . .
T Consensus 4 ~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~----gIs~~tl~rW~~~~~~~-----g~~~~~~--~-----~-~--- 60 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS---DGASLQQIANDL----GINRVTLKNWIIKYGSN-----HNVQGTT--P-----S-A--- 60 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG---GGSCHHHHHHHH----TSCHHHHHHHHHHHCCC-----STTCSCC--C-----C-H---
T ss_pred CCCCHHHHHHHHHHHHHc---CCChHHHHHHHH----CcCHHHHHHHHHHHhhc-----CcccCCC--C-----C-C---
Confidence 478888876665555432 012367899999 99999998886322110 0000000 0 0 0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003250 111 ENDRLQKQVSQLVCENGYMKQQLRTAP 137 (836)
Q Consensus 111 e~~~l~~~~~~L~~ENa~L~~el~r~~ 137 (836)
......++.+|+.||++|+.|++-+.
T Consensus 61 -~~~~~~ei~~L~~e~~~L~~e~~~Lk 86 (97)
T 2jn6_A 61 -AVSEAEQIRQLKKENALQRARTRHPA 86 (97)
T ss_dssp -HHHTHHHHHHHHHCGGGGGGTTSCCC
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 01123455678888888888877554
No 180
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=42.03 E-value=48 Score=24.75 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=20.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003250 103 AMNKLLMEENDRLQKQVSQLVCENGYMKQ 131 (836)
Q Consensus 103 ~~n~~l~ee~~~l~~~~~~L~~ENa~L~~ 131 (836)
.+|+.+..+.+.-+.++.+|+.||..|++
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 45666666666667777778888877653
No 181
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=39.40 E-value=71 Score=29.84 Aligned_cols=106 Identities=9% Similarity=0.006 Sum_probs=65.5
Q ss_pred hHHHHhhcCCCceeccCCCCCceeecccHH---HHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCe
Q 003250 719 SVLKNLWQHSDAILCCSLKSMPVFIFANQA---GLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAG 795 (836)
Q Consensus 719 ~~~~~l~~~~~avl~h~~~~dP~f~yaN~a---al~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~G 795 (836)
.+-..|=+-++.|+..+. +=.+.|.|++ |-++|... .++.+-+..--.+ +...+....+-++++.|-... .=
T Consensus 20 ~l~~IL~~~~~gI~~vD~--~g~I~~~N~a~~~~~~i~g~~-~~~iGr~v~~~~~-~~~~~~v~~i~~~l~~g~~~~-~~ 94 (151)
T 2qkp_A 20 QANLILNHLPLEITFVNK--DDIFQYYNDSVPAAEMVFKRT-PSQVGRNVELCHP-PKVLDKVKKVFELLRNGQRDK-VN 94 (151)
T ss_dssp HHHHHHHHSSSEEEEEET--TSBEEEECCCSCGGGCSSCCC-GGGTTSBGGGSSC-HHHHHHHHHHHHHHHTTSBSE-EE
T ss_pred HHHHHHHhCCCceEEEcC--CCeEEEEeCCCchhhhhcCCC-HHHcCCCHHHhCC-HHHHHHHHHHHHHHHcCCccE-EE
Confidence 333444478888877665 6689999999 99999944 7888877644333 333333333444555564321 22
Q ss_pred eEEcCC--CCeeEEcCeEEeEeecCCCCceEEEEEEecCc
Q 003250 796 ICMSTM--GRHVSYEQAVAWKVLAPEDNTVHCLAFSFINW 833 (836)
Q Consensus 796 vRiss~--Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~W 833 (836)
+.+... |+.+.+ ...-|.| ++|.+.|.-.+|.+=
T Consensus 95 ~~~~~~~~~~~v~v---~~~Pi~d-~~G~~~G~vev~~Di 130 (151)
T 2qkp_A 95 MWFQSERLGKFVYV---TYAAVRD-QAGDFQGVLEYVQDI 130 (151)
T ss_dssp EEEEETTTTEEEEE---EEEEEEC-TTCCEEEEEEEEEEC
T ss_pred EEEecCCCCeEEEE---EEEEEEC-CCCCEEEEEEEEEEC
Confidence 333333 555544 3345568 899999988888653
No 182
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=38.70 E-value=86 Score=25.22 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 111 ENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 111 e~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
-.+.|+.++.+|..||..|+.|+..
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777654
No 183
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.09 E-value=46 Score=26.76 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 103 AMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 103 ~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
.+.+.|+.++..|+..+..|..+++.|+.+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666667777777777777665
No 184
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=38.05 E-value=82 Score=33.94 Aligned_cols=102 Identities=7% Similarity=-0.054 Sum_probs=69.5
Q ss_pred HHhhcCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCC
Q 003250 722 KNLWQHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTM 801 (836)
Q Consensus 722 ~~l~~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~ 801 (836)
..|=+.+++|+..+. +=.++|.|++ .++| .+-.++.+-+...-..+.. ......+.++++.|-.. ..-+.+...
T Consensus 243 ~IL~~l~dgIivvD~--~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~-~~~~~~l~~~l~~g~~~-~~~~~~~~~ 316 (369)
T 3cax_A 243 AIFEALPVDVTFIDK--DDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKS-VYVVNKILKAFKEGRKK-EATFWLRLR 316 (369)
T ss_dssp HHHHHSSSEEEEECT--TSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGG-HHHHHHHHHHHHHTSCS-CEEEEEEET
T ss_pred HHHHhCCCcEEEECC--CCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhh-HHHHHHHHHHHHcCCce-EEEEEEeeC
Confidence 445578889988876 5589999999 9999 8889999887765554332 23333344556666432 234455556
Q ss_pred CCeeEEcCeEEeEeecCCCCceEEEEEEecCc
Q 003250 802 GRHVSYEQAVAWKVLAPEDNTVHCLAFSFINW 833 (836)
Q Consensus 802 Grrf~ie~A~vW~v~d~~~g~~~gqAa~f~~W 833 (836)
|+.+.+. +--|.| ++|.+.|...+|.+-
T Consensus 317 g~~v~v~---~~PI~d-~~G~~~G~v~v~~DI 344 (369)
T 3cax_A 317 EKYVYIK---YVPLFN-EKGEYIGTLEMTMDI 344 (369)
T ss_dssp TEEEEEE---EEEEEC-TTSCEEEEEEEEEEC
T ss_pred CEEEEEE---EEEEEC-CCCCEEEEEEEEEcC
Confidence 7766553 335678 999999988888764
No 185
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=36.39 E-value=24 Score=32.58 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 112 NDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 112 ~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
.++|.+++++|++||..||+++.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456889999999999999999976
No 186
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=35.86 E-value=29 Score=29.85 Aligned_cols=33 Identities=27% Similarity=0.223 Sum_probs=28.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 102 TAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 102 ~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
+.+-+.|++.+.+|.....+|..||..||.-..
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345688999999999999999999999996544
No 187
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=35.19 E-value=28 Score=28.10 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 110 EENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 110 ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
.....|+.+-..|+.++..|++++
T Consensus 29 ~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 29 NRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555666666666554
No 188
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=33.84 E-value=82 Score=28.11 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003250 83 CREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVC 124 (836)
Q Consensus 83 aK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ 124 (836)
|+.|+..+...++.++..+..+-+.+++++.++.++...++.
T Consensus 42 CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 42 CRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445565666666666666666666666666666555554443
No 189
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=32.95 E-value=82 Score=24.39 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=18.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 101 LTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 101 l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
++..|-.+...-..+++-+..|+.|-++|..|.
T Consensus 15 lkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 15 LKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555566666666666654
No 190
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.67 E-value=91 Score=29.65 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 104 MNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 104 ~n~~l~ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
..+.+..++.++.++...|..++.+|..++
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444443
No 191
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.44 E-value=52 Score=34.47 Aligned_cols=32 Identities=28% Similarity=0.203 Sum_probs=14.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 003250 98 NRKLTAMNKLLMEENDRLQKQVSQLVCENGYM 129 (836)
Q Consensus 98 n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L 129 (836)
...+.+.|+.|+++.+++.+++.+|+.|+.+|
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555444444444444444443
No 192
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=30.89 E-value=1.4e+02 Score=31.69 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=60.3
Q ss_pred CCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCccCC-CeeEE-cCCCCeeEEcCeEEeEe
Q 003250 738 SMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTYLP-AGICM-STMGRHVSYEQAVAWKV 815 (836)
Q Consensus 738 ~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~~y-~GvRi-ss~Grrf~ie~A~vW~v 815 (836)
.|=.|+|.|.++..+++++-+||.+.+.---.-+.++....+.+.++++.|-.... .=.|+ .+.|.-+|+| +-|++
T Consensus 173 ~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwve--t~~~~ 250 (309)
T 3gdi_A 173 PNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLD--TSWSS 250 (309)
T ss_dssp TTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEEE--EEEEE
T ss_pred CCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEEE--EEEEE
Confidence 36789999999999999999999998876555677777777778888875431110 11344 7888888886 45654
Q ss_pred -ecCCCCceEE
Q 003250 816 -LAPEDNTVHC 825 (836)
Q Consensus 816 -~d~~~g~~~g 825 (836)
+|+.++...+
T Consensus 251 ~~np~s~~~e~ 261 (309)
T 3gdi_A 251 FINPWSRKISF 261 (309)
T ss_dssp EECTTTCCEEE
T ss_pred EECCCCCcccE
Confidence 4533455543
No 193
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=30.00 E-value=1.7e+02 Score=24.15 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 111 ENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 111 e~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
....|+.++.+|..+|..|+.|+..
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666554
No 194
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=29.37 E-value=1.9e+02 Score=30.79 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=60.0
Q ss_pred CCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHh-CCccCCCeeE-EcCCCCeeEEcCeEEeEe
Q 003250 738 SMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQ-GFTYLPAGIC-MSTMGRHVSYEQAVAWKV 815 (836)
Q Consensus 738 ~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~q-Gy~~~y~GvR-iss~Grrf~ie~A~vW~v 815 (836)
.|=.|.|.|.++..+++++-+||.+.+.---.-|.++....+.+.++++. |-.....=.| +.+.|.-+|++- -|++
T Consensus 184 ~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet--~~~~ 261 (320)
T 4dj2_A 184 PSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDT--SWAG 261 (320)
T ss_dssp TTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEEEC--EEEE
T ss_pred CCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEEEE--EEEE
Confidence 36789999999999999999999998876666677777777777777773 4321111123 367888888863 4444
Q ss_pred -ecCCCCceEEE
Q 003250 816 -LAPEDNTVHCL 826 (836)
Q Consensus 816 -~d~~~g~~~gq 826 (836)
+|+.++...+.
T Consensus 262 ~~np~s~~~e~I 273 (320)
T 4dj2_A 262 FVHPWSRKVAFV 273 (320)
T ss_dssp EECTTTCSEEEE
T ss_pred EECCCCCCccEE
Confidence 45444555443
No 195
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=29.05 E-value=21 Score=28.23 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=31.7
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccc
Q 003250 30 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQ 79 (836)
Q Consensus 30 R~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQ 79 (836)
+..||+++.......+... .+......++|+++ |+++.+|.-|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~----gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKY----NIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHT----TSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHH----CcCHHHHHHHHH
Confidence 4579999887775555433 22112267899999 999999999964
No 196
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.89 E-value=1.5e+02 Score=26.99 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=9.0
Q ss_pred HHHHHHHHHhHHHHHhhc
Q 003250 117 KQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 117 ~~~~~L~~ENa~L~~el~ 134 (836)
.++.+|+.|+++||.-+.
T Consensus 75 ~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555444
No 197
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.60 E-value=1.1e+02 Score=25.87 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 106 KLLMEENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 106 ~~l~ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
..+...+..+..+...|+.++..|..|+
T Consensus 39 ~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 39 VTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444
No 198
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=28.43 E-value=1.7e+02 Score=28.10 Aligned_cols=38 Identities=8% Similarity=0.057 Sum_probs=29.9
Q ss_pred ceeeEEEeChhHHHHHhcCccchhhhCCCceEeeeecC
Q 003250 214 RACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPA 251 (836)
Q Consensus 214 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~ 251 (836)
..+.+|.-.+.++-+.+.|.++|-+.+|.+.-..++..
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~ 43 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQ 43 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEec
Confidence 34566677888999999999999999998765555554
No 199
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=28.34 E-value=14 Score=33.92 Aligned_cols=66 Identities=27% Similarity=0.288 Sum_probs=39.4
Q ss_pred CCCccceeeccccchhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003250 68 NIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTAP 137 (836)
Q Consensus 68 gL~~rQVKvWFQNRRaK~Krrqe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~~ 137 (836)
||++.+|.-.=|-||+ .|.+--...| ..+-..+...|..++..|+.+..+|..||+.|+.|+++..
T Consensus 27 ~Ls~~e~~~lK~~RR~-lKNR~yAq~C---R~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRT-LKNRGYAASC---RVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp TCCHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHHHh-hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665544333332 2222222222 2222345566667777777888889999999999998764
No 200
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.30 E-value=2e+02 Score=22.27 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=24.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003250 98 NRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 98 n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
|..++..-..+++.+-.++.+.+.|..--+-||+|+.|+
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666666777776653
No 201
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=26.47 E-value=2.6e+02 Score=29.65 Aligned_cols=85 Identities=14% Similarity=0.159 Sum_probs=59.6
Q ss_pred CCceeecccHHHHHhhcCCHHHhhcCcccccCCcccHHHHHHHHHHHHHhCCcc--CCCeeE-EcCCCCeeEEcCeEEeE
Q 003250 738 SMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFAKLMQQGFTY--LPAGIC-MSTMGRHVSYEQAVAWK 814 (836)
Q Consensus 738 ~dP~f~yaN~aal~l~E~~w~~l~~lpsr~tae~~~r~~r~~~l~~v~~qGy~~--~y~GvR-iss~Grrf~ie~A~vW~ 814 (836)
.|=.|+|.|.++..+++++-+||++.+..--.-|.++....+.+.++++.|-.. ...=.| +.+.|.-+|++ +-|+
T Consensus 182 ~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwve--t~~~ 259 (317)
T 4dj3_A 182 PGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILD--SSWS 259 (317)
T ss_dssp TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEE--EEEE
T ss_pred CCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEE--EEEE
Confidence 367899999999999999999999988766666777777777788888754321 111123 47788888886 3455
Q ss_pred e-ecCCCCceE
Q 003250 815 V-LAPEDNTVH 824 (836)
Q Consensus 815 v-~d~~~g~~~ 824 (836)
+ +|+.++...
T Consensus 260 ~~~np~s~~~e 270 (317)
T 4dj3_A 260 SFVNPWSRKVS 270 (317)
T ss_dssp EEECSSSCCEE
T ss_pred EEECCCCCccc
Confidence 4 453345443
No 202
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.09 E-value=78 Score=27.10 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003250 106 KLLMEENDRLQKQVSQLVCENGYMKQQLRTA 136 (836)
Q Consensus 106 ~~l~ee~~~l~~~~~~L~~ENa~L~~el~r~ 136 (836)
..|.+++..++.+..+|+.+|..|+++|...
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566777778888899999999999998764
No 203
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=26.09 E-value=47 Score=30.37 Aligned_cols=107 Identities=12% Similarity=0.143 Sum_probs=62.2
Q ss_pred ceeeEEEeChhHHHHHhcCccchhhhCCCc---eEeeeecCCC-ccHHHHHHHhhhccccccCCceeeEEeeeeeccCCc
Q 003250 214 RACGLVSLEPTKIAEILKDRPSWFRDCRSL---EVFTMFPAGN-AGTIELLYTQAYAPTTLAPARDFWTLRYTTTLDNGS 289 (836)
Q Consensus 214 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~---~~l~~~~~g~-~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~ 289 (836)
+.+..|...+.++-+.+.|.+.|-+.+|.. ++++-...|. ++ +.+++.+ -.-+.++-|..|++..-.+
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~----~~~~~~~--~~~~~~~~~~~~v~~~~~~-- 76 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVST----VDAEAQV--GFSFLREKFATRVRRDKDA-- 76 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEE----EEEEEEC--STTSSCCEEEEEEEEETTT--
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCce----EEEEEEE--EecceeEEEEEEEEEcCCC--
Confidence 345667778899999999999999988765 4544332221 11 2233333 2235566677788764333
Q ss_pred EEEEEeecCCCCCCCCCCCcccccceeecCcceeEeecCCCccEEEEEEeeecc
Q 003250 290 LVVCERSLSGSGAGPNPASAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLE 343 (836)
Q Consensus 290 waVvDvSld~~~~~~~~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d 343 (836)
..|.-.++++ +. ..+...++ +++.++| |+|++.-++|+.
T Consensus 77 ~~i~~~~~~G----~f----~~~~g~w~------f~~~~~g-t~v~~~~~~~~~ 115 (148)
T 1t17_A 77 RSIDVSLLYG----PF----KRLNNGWR------FMPEGDA-TRVEFVIEFAFK 115 (148)
T ss_dssp CEEEEEESST----TS----SCEEEEEE------EEEETTE-EEEEEEEEECCS
T ss_pred cEEEEEECCC----Ch----hccEEEEE------EEECCCC-eEEEEEEEEEEC
Confidence 2233334443 11 11122233 3566777 999999888865
No 204
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.17 E-value=1.7e+02 Score=25.68 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=14.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003250 103 AMNKLLMEENDRLQKQVSQLVCENGYMK 130 (836)
Q Consensus 103 ~~n~~l~ee~~~l~~~~~~L~~ENa~L~ 130 (836)
.+|+.|.+..+.++.++..|+.||..|+
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544
No 205
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.97 E-value=2.1e+02 Score=25.14 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=16.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003250 102 TAMNKLLMEENDRLQKQVSQLVCENGYMK 130 (836)
Q Consensus 102 ~~~n~~l~ee~~~l~~~~~~L~~ENa~L~ 130 (836)
..+|+.|.+..+.++.++..|+.+|..|+
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555666666665555
No 206
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=24.08 E-value=50 Score=28.25 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=24.3
Q ss_pred HHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHH
Q 003250 39 EALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 92 (836)
Q Consensus 39 ~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~ 92 (836)
..+.-.|+.+|||++.--.+ |+ .|||-+|++++...
T Consensus 19 RiIkiLyQSNP~P~p~GTrq-aR-----------------RNRRRRWR~RQrQI 54 (72)
T 3lph_A 19 RLIKFLYQSNPPPNPEGTRQ-AR-----------------RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHTCCCCCCCSCHH-HH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchH-HH-----------------HHHHHHHHHHHHHH
Confidence 45556699999998752222 33 48999999877643
No 207
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.86 E-value=2.1e+02 Score=27.19 Aligned_cols=43 Identities=9% Similarity=0.003 Sum_probs=26.0
Q ss_pred HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 93 RLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 93 ~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
.+..+...++.+......+++.+.++...|+.++..|+.++.+
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555556666666667777777777766654
No 208
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=22.74 E-value=2.8e+02 Score=25.17 Aligned_cols=44 Identities=36% Similarity=0.382 Sum_probs=31.2
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003250 90 EASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQL 133 (836)
Q Consensus 90 e~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el 133 (836)
++.+++.......+.-..|..+.++|..+-+.|+.||+..+++=
T Consensus 52 e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~~ 95 (104)
T 3s9g_A 52 ENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQE 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34445554445555667777788888888888999998888763
No 209
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.11 E-value=2.3e+02 Score=24.82 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003250 89 KEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMKQQLR 134 (836)
Q Consensus 89 qe~~~l~~~n~~l~~~n~~l~ee~~~l~~~~~~L~~ENa~L~~el~ 134 (836)
.+...++..|..+..++..++...+.+..+.++|+.|.+..++.|.
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666677777777777766666666666777766655555443
No 210
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=22.08 E-value=45 Score=30.02 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=37.5
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhH
Q 003250 28 GKYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 84 (836)
Q Consensus 28 rkR~r~T~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK 84 (836)
++|.+||.++...+-..+.+++.+. ..++|+++ |+++..|.-|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~----gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRF----NIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHH----TCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHh----CCCHHHHHHHHhchhhh
Confidence 3567899999988777775555443 34688999 99999999998765543
No 211
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.91 E-value=1.5e+02 Score=25.60 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003250 105 NKLLMEENDRLQKQVSQLVCENGYMKQQLRT 135 (836)
Q Consensus 105 n~~l~ee~~~l~~~~~~L~~ENa~L~~el~r 135 (836)
-..|.++..++..+..+|+.||..|+++|+.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556667777778888888899889888764
No 212
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=20.45 E-value=1.2e+02 Score=28.33 Aligned_cols=95 Identities=6% Similarity=-0.086 Sum_probs=66.8
Q ss_pred cCCCceeccCCCCCceeecccHHHHHhhcCCHHHhhcCcc-cccCCcccHHHHHHHHHHHHHhCCccCCCeeEEcCCCCe
Q 003250 726 QHSDAILCCSLKSMPVFIFANQAGLDMLETTLVALQDITL-DKIFDESGRKALCADFAKLMQQGFTYLPAGICMSTMGRH 804 (836)
Q Consensus 726 ~~~~avl~h~~~~dP~f~yaN~aal~l~E~~w~~l~~lps-r~tae~~~r~~r~~~l~~v~~qGy~~~y~GvRiss~Grr 804 (836)
.-++.|+-=+ .+=...|-|+++..+..++-++..+-+. +..+.-....+-+..+.+..++|-++.--+=.++..|++
T Consensus 25 ~l~~Gii~lD--~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v~~~~~~p 102 (125)
T 1nwz_A 25 GLAFGAIQLD--GDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDYQMTP 102 (125)
T ss_dssp TCSSEEEEEE--TTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEECTTSCC
T ss_pred ccCceEEEEC--CCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCCCCE
Confidence 4455555433 4678899999999999999999999887 445555555665555666666998776667778999998
Q ss_pred eEEcCeEEeEeecCCCCceEEE
Q 003250 805 VSYEQAVAWKVLAPEDNTVHCL 826 (836)
Q Consensus 805 f~ie~A~vW~v~d~~~g~~~gq 826 (836)
+.++=.+ +.+ .+|...+.
T Consensus 103 ~~v~i~l---~~~-~~~~~~~i 120 (125)
T 1nwz_A 103 TKVKVHM---KKA-LSGDSYWV 120 (125)
T ss_dssp EEEEEEE---EEC-SSSSEEEE
T ss_pred EEEEEEE---EEc-CCCCEEEE
Confidence 8875333 234 55555443
No 213
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=20.24 E-value=34 Score=31.69 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=23.8
Q ss_pred HHHHHhHhcCCCCCHHHHHHHHHhCCcccCCCccceeeccccchhHHHHHHHHH
Q 003250 39 EALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 92 (836)
Q Consensus 39 ~~LE~~F~~~~~Ps~~~R~eLA~~L~~~~gL~~rQVKvWFQNRRaK~Krrqe~~ 92 (836)
..+.-.|+.+|||.+.--.+ |+ .|||-|||+++...
T Consensus 16 RiIkiLyQSNPyP~peGTRq-aR-----------------RNRRRRWR~RQrQI 51 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGTRQ-AR-----------------RNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHSSCCCCCCCCTT-TH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchh-hh-----------------HhHHHHHHHHHHHH
Confidence 34555699999998751111 11 58999999877653
Done!