Query 003251
Match_columns 836
No_of_seqs 412 out of 1738
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 19:55:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 1.3E-89 2.8E-94 709.2 22.1 229 337-566 1-229 (229)
2 PF01852 START: START domain; 99.7 1.3E-17 2.8E-22 169.0 14.0 202 342-566 1-205 (206)
3 smart00234 START in StAR and p 99.7 4.3E-16 9.4E-21 158.3 19.1 202 343-567 2-206 (206)
4 KOG0842 Transcription factor t 99.7 8E-17 1.7E-21 173.3 7.4 69 129-197 148-216 (307)
5 KOG0483 Transcription factor H 99.6 7E-16 1.5E-20 157.7 5.4 80 137-216 53-132 (198)
6 KOG0485 Transcription factor N 99.6 1.6E-15 3.6E-20 153.7 7.1 66 130-195 100-165 (268)
7 KOG0850 Transcription factor D 99.6 9.2E-16 2E-20 157.2 4.9 76 124-199 112-187 (245)
8 KOG0488 Transcription factor B 99.6 1E-15 2.3E-20 166.6 5.3 66 130-195 168-233 (309)
9 KOG0489 Transcription factor z 99.6 8.2E-16 1.8E-20 164.2 2.7 65 132-196 157-221 (261)
10 KOG0843 Transcription factor E 99.6 2E-15 4.3E-20 149.8 4.1 65 133-197 101-165 (197)
11 KOG0487 Transcription factor A 99.5 6.5E-15 1.4E-19 158.7 7.2 64 132-195 233-296 (308)
12 KOG0494 Transcription factor C 99.5 4.3E-15 9.2E-20 153.9 5.3 70 137-206 144-213 (332)
13 KOG0484 Transcription factor P 99.5 1.5E-15 3.2E-20 138.5 1.6 65 130-194 13-77 (125)
14 KOG0848 Transcription factor C 99.5 1.2E-14 2.7E-19 151.3 2.5 67 131-197 196-262 (317)
15 KOG0492 Transcription factor M 99.5 6E-14 1.3E-18 141.8 5.9 65 130-194 140-204 (246)
16 KOG2251 Homeobox transcription 99.4 4.7E-14 1E-18 144.3 4.6 67 130-196 33-99 (228)
17 PF00046 Homeobox: Homeobox do 99.4 9.3E-14 2E-18 114.5 3.2 57 135-191 1-57 (57)
18 KOG0493 Transcription factor E 99.4 3.3E-13 7.2E-18 140.1 4.1 59 135-193 247-305 (342)
19 KOG0844 Transcription factor E 99.3 4.8E-13 1E-17 141.4 3.5 66 130-195 177-242 (408)
20 cd00177 START Lipid-binding ST 99.2 1.4E-10 3E-15 115.1 15.5 186 346-563 2-190 (193)
21 KOG0486 Transcription factor P 99.2 5.8E-12 1.3E-16 134.3 5.3 62 132-193 110-171 (351)
22 COG5576 Homeodomain-containing 99.2 5.5E-12 1.2E-16 125.2 4.3 65 133-197 50-114 (156)
23 TIGR01565 homeo_ZF_HD homeobox 99.2 1E-11 2.3E-16 103.9 5.0 53 134-186 1-57 (58)
24 KOG0491 Transcription factor B 99.2 1.4E-12 3E-17 127.9 -0.5 66 132-197 98-163 (194)
25 smart00389 HOX Homeodomain. DN 99.2 5.2E-12 1.1E-16 103.3 2.9 55 136-190 2-56 (56)
26 cd00086 homeodomain Homeodomai 99.2 7.2E-12 1.6E-16 103.1 3.5 56 136-191 2-57 (59)
27 KOG4577 Transcription factor L 99.2 1.6E-11 3.5E-16 129.2 5.9 78 133-210 166-243 (383)
28 KOG3802 Transcription factor O 99.2 1.3E-11 2.9E-16 135.8 4.6 63 131-193 291-353 (398)
29 KOG0847 Transcription factor, 99.1 2.2E-11 4.8E-16 124.0 1.9 66 130-195 163-228 (288)
30 cd08871 START_STARD10-like Lip 99.1 1.3E-08 2.7E-13 106.1 19.9 201 345-578 9-213 (222)
31 cd08867 START_STARD4_5_6-like 99.0 2.4E-08 5.2E-13 102.9 18.1 195 340-565 3-205 (206)
32 cd08868 START_STARD1_3_like Ch 99.0 2E-08 4.3E-13 103.6 17.0 196 340-568 6-208 (208)
33 KOG0490 Transcription factor, 98.9 6.8E-10 1.5E-14 115.0 4.1 64 131-194 57-120 (235)
34 cd08904 START_STARD6-like Lipi 98.8 1.5E-07 3.3E-12 97.7 15.1 171 341-536 4-178 (204)
35 KOG0849 Transcription factor P 98.7 1.2E-08 2.6E-13 113.8 3.8 65 130-194 172-236 (354)
36 cd08903 START_STARD5-like Lipi 98.6 1.1E-06 2.3E-11 91.3 16.8 193 340-565 3-205 (208)
37 cd08909 START_STARD13-like C-t 98.6 2.4E-06 5.2E-11 88.9 16.8 129 393-536 48-178 (205)
38 KOG1168 Transcription factor A 98.5 4.5E-08 9.7E-13 103.7 4.0 62 132-193 307-368 (385)
39 cd08869 START_RhoGAP C-termina 98.5 3.1E-06 6.6E-11 87.2 15.7 168 345-541 4-174 (197)
40 PLN00188 enhanced disease resi 98.5 1.7E-06 3.7E-11 102.5 14.7 129 397-538 227-365 (719)
41 cd08905 START_STARD1-like Chol 98.4 2.9E-06 6.2E-11 88.2 14.1 192 340-566 6-207 (209)
42 cd08906 START_STARD3-like Chol 98.4 1E-05 2.2E-10 84.3 16.3 196 339-566 5-207 (209)
43 cd08902 START_STARD4-like Lipi 98.3 1.1E-05 2.3E-10 83.5 14.9 192 340-564 3-200 (202)
44 KOG0775 Transcription factor S 98.2 1.2E-06 2.6E-11 92.8 3.5 50 141-190 183-232 (304)
45 cd08910 START_STARD2-like Lipi 98.1 3.9E-05 8.5E-10 79.8 14.1 183 352-567 17-206 (207)
46 cd08877 START_2 Uncharacterize 98.0 0.00012 2.6E-09 76.1 15.3 200 340-566 3-213 (215)
47 cd08876 START_1 Uncharacterize 97.9 0.00017 3.8E-09 73.1 14.4 152 398-565 42-194 (195)
48 cd08874 START_STARD9-like C-te 97.9 0.00016 3.5E-09 75.3 12.6 130 391-539 44-181 (205)
49 cd08908 START_STARD12-like C-t 97.8 0.00027 5.8E-09 73.7 13.6 162 344-534 11-175 (204)
50 cd08907 START_STARD8-like C-te 97.7 0.00025 5.4E-09 73.8 10.6 166 344-536 11-178 (205)
51 KOG0774 Transcription factor P 97.6 2.7E-05 5.9E-10 82.1 2.7 59 135-193 189-250 (334)
52 cd08870 START_STARD2_7-like Li 97.6 0.0017 3.6E-08 67.5 15.7 153 397-567 50-208 (209)
53 cd08872 START_STARD11-like Cer 97.5 0.003 6.4E-08 67.3 16.6 195 345-565 9-224 (235)
54 PF05920 Homeobox_KN: Homeobox 97.5 2.3E-05 4.9E-10 61.3 0.2 34 155-188 7-40 (40)
55 cd08911 START_STARD7-like Lipi 97.5 0.0022 4.8E-08 66.7 14.1 152 398-567 46-206 (207)
56 KOG0490 Transcription factor, 97.4 0.00011 2.4E-09 76.3 4.0 64 131-194 150-213 (235)
57 KOG2252 CCAAT displacement pro 97.4 0.00011 2.3E-09 84.9 3.4 61 130-190 416-476 (558)
58 cd08871 START_STARD10-like Lip 97.1 0.023 5.1E-07 59.4 17.4 175 611-833 21-201 (222)
59 cd08873 START_STARD14_15-like 97.1 0.0056 1.2E-07 65.3 12.2 118 403-532 83-203 (235)
60 cd08907 START_STARD8-like C-te 96.6 0.15 3.2E-06 53.5 17.8 174 610-833 24-203 (205)
61 cd08869 START_RhoGAP C-termina 96.5 0.12 2.7E-06 53.3 17.0 174 611-834 17-196 (197)
62 cd08913 START_STARD14-like Lip 96.4 0.037 8.1E-07 59.3 12.8 129 400-541 84-215 (240)
63 cd08914 START_STARD15-like Lip 96.4 0.029 6.3E-07 59.9 11.5 129 398-541 79-211 (236)
64 KOG1146 Homeobox protein [Gene 96.3 0.0065 1.4E-07 76.3 7.0 62 133-194 902-963 (1406)
65 cd08904 START_STARD6-like Lipi 96.2 0.23 4.9E-06 52.1 16.5 174 612-832 21-203 (204)
66 cd08874 START_STARD9-like C-te 95.6 0.15 3.3E-06 53.4 12.5 130 610-763 19-157 (205)
67 cd08876 START_1 Uncharacterize 94.9 1.8 3.8E-05 44.0 17.4 59 610-677 14-72 (195)
68 cd08877 START_2 Uncharacterize 94.9 1.4 3.1E-05 45.8 16.9 117 599-732 10-129 (215)
69 cd00177 START Lipid-binding ST 94.6 1.7 3.7E-05 43.0 16.1 147 613-802 15-165 (193)
70 cd08868 START_STARD1_3_like Ch 94.5 1.8 3.9E-05 44.8 16.6 132 612-764 23-161 (208)
71 cd08870 START_STARD2_7-like Li 94.4 1.5 3.2E-05 45.7 15.6 106 613-732 22-133 (209)
72 smart00234 START in StAR and p 94.2 2.3 5E-05 43.3 16.6 135 612-764 18-158 (206)
73 KOG0773 Transcription factor M 94.2 0.033 7.2E-07 62.1 3.3 61 134-194 239-302 (342)
74 cd08867 START_STARD4_5_6-like 94.2 4.7 0.0001 41.7 18.9 145 593-763 8-160 (206)
75 cd08906 START_STARD3-like Chol 94.2 3.2 7E-05 43.5 17.7 144 596-762 10-160 (209)
76 cd08903 START_STARD5-like Lipi 93.8 2 4.3E-05 44.9 15.3 176 611-833 20-206 (208)
77 cd08911 START_STARD7-like Lipi 93.4 2.2 4.7E-05 44.5 14.6 180 611-833 19-205 (207)
78 PF11569 Homez: Homeodomain le 93.3 0.025 5.5E-07 47.5 0.1 43 145-187 9-51 (56)
79 cd08908 START_STARD12-like C-t 93.1 4.3 9.3E-05 42.8 16.2 172 614-833 28-202 (204)
80 cd08909 START_STARD13-like C-t 93.0 4.4 9.6E-05 42.7 16.2 173 613-833 27-203 (205)
81 cd08914 START_STARD15-like Lip 92.7 1.2 2.6E-05 47.8 11.8 58 610-678 53-110 (236)
82 cd08873 START_STARD14_15-like 92.4 1.2 2.6E-05 47.9 11.3 66 611-689 53-118 (235)
83 PF01852 START: START domain; 91.8 4.5 9.8E-05 41.1 14.3 150 595-763 2-157 (206)
84 cd08860 TcmN_ARO-CYC_like N-te 90.3 5.1 0.00011 39.6 12.5 140 401-567 5-144 (146)
85 cd05018 CoxG Carbon monoxide d 89.5 4.7 0.0001 37.9 11.2 119 402-546 6-124 (144)
86 cd08866 SRPBCC_11 Ligand-bindi 89.1 6.8 0.00015 37.2 12.1 133 400-566 2-143 (144)
87 PRK09413 IS2 repressor TnpA; R 89.0 1.1 2.4E-05 43.0 6.5 41 138-183 10-51 (121)
88 cd08875 START_ArGLABRA2_like C 88.4 14 0.00031 39.7 14.9 185 591-809 3-204 (229)
89 cd08864 SRPBCC_DUF3074 DUF3074 88.2 3.4 7.4E-05 43.5 10.1 103 432-540 76-184 (208)
90 KOG2761 START domain-containin 86.3 5.1 0.00011 42.6 10.0 112 406-530 63-183 (219)
91 cd07813 COQ10p_like Coenzyme Q 86.1 8.2 0.00018 36.6 10.7 135 401-567 3-137 (138)
92 cd08905 START_STARD1-like Chol 85.4 43 0.00093 35.1 16.5 195 591-833 5-207 (209)
93 KOG4196 bZIP transcription fac 84.9 2.6 5.7E-05 41.2 6.5 86 139-258 22-108 (135)
94 cd08910 START_STARD2-like Lipi 84.8 1.5 3.3E-05 45.8 5.4 93 610-719 22-116 (207)
95 cd07819 SRPBCC_2 Ligand-bindin 84.4 23 0.00049 33.0 12.8 132 401-564 6-139 (140)
96 KOG3623 Homeobox transcription 83.9 0.56 1.2E-05 56.5 1.9 46 146-191 568-613 (1007)
97 PRK10724 hypothetical protein; 83.4 23 0.00049 35.7 12.8 137 400-568 18-154 (158)
98 cd08913 START_STARD14-like Lip 82.6 1.9 4.2E-05 46.4 5.2 58 610-678 56-113 (240)
99 cd08861 OtcD1_ARO-CYC_like N-t 81.6 9.5 0.00021 36.1 9.1 27 402-428 4-30 (142)
100 KOG4005 Transcription factor X 81.3 7 0.00015 41.9 8.5 39 182-220 81-121 (292)
101 cd07817 SRPBCC_8 Ligand-bindin 80.7 37 0.00081 31.6 12.7 134 402-566 5-138 (139)
102 PF04218 CENP-B_N: CENP-B N-te 78.7 1.7 3.6E-05 36.1 2.4 46 135-185 1-46 (53)
103 PF10604 Polyketide_cyc2: Poly 78.7 55 0.0012 30.2 14.3 35 402-440 7-41 (139)
104 PRK15422 septal ring assembly 78.7 5.8 0.00013 35.8 5.9 61 190-264 12-76 (79)
105 PF02183 HALZ: Homeobox associ 78.5 4 8.7E-05 33.1 4.5 40 193-260 2-41 (45)
106 cd07821 PYR_PYL_RCAR_like Pyra 78.1 49 0.0011 30.5 12.5 135 402-566 6-140 (140)
107 cd08902 START_STARD4-like Lipi 77.7 4.7 0.0001 42.5 5.9 59 611-678 21-79 (202)
108 cd08872 START_STARD11-like Cer 75.7 48 0.001 35.6 13.1 97 609-719 22-121 (235)
109 COG3074 Uncharacterized protei 73.8 8.8 0.00019 33.9 5.5 58 193-264 15-76 (79)
110 PF06005 DUF904: Protein of un 73.4 8.1 0.00018 34.3 5.4 49 194-263 16-68 (72)
111 TIGR00219 mreC rod shape-deter 71.5 4.8 0.0001 44.4 4.4 42 197-255 67-108 (283)
112 cd08865 SRPBCC_10 Ligand-bindi 70.4 77 0.0017 29.1 11.8 136 402-566 4-139 (140)
113 PF12711 Kinesin-relat_1: Kine 64.9 12 0.00027 34.3 4.9 47 200-261 21-67 (86)
114 cd07822 SRPBCC_4 Ligand-bindin 64.5 69 0.0015 29.5 10.2 51 513-566 91-141 (141)
115 PRK13922 rod shape-determining 64.5 8.2 0.00018 41.9 4.4 40 197-254 70-109 (276)
116 cd07818 SRPBCC_1 Ligand-bindin 63.7 68 0.0015 30.6 10.2 29 401-429 6-34 (150)
117 PLN00188 enhanced disease resi 61.7 28 0.00061 43.0 8.5 157 610-802 195-361 (719)
118 KOG4343 bZIP transcription fac 60.1 17 0.00038 43.1 6.1 19 239-257 317-335 (655)
119 PF01527 HTH_Tnp_1: Transposas 57.7 1.9 4.1E-05 37.1 -1.6 43 136-182 2-44 (76)
120 KOG0971 Microtubule-associated 55.1 31 0.00067 43.4 7.3 58 198-261 334-391 (1243)
121 TIGR03752 conj_TIGR03752 integ 50.5 21 0.00045 42.1 4.7 55 193-260 77-131 (472)
122 KOG0709 CREB/ATF family transc 49.6 1.1E+02 0.0024 36.1 10.3 97 138-262 218-317 (472)
123 PF04880 NUDE_C: NUDE protein, 46.7 17 0.00037 37.3 2.9 20 239-258 25-44 (166)
124 PF06156 DUF972: Protein of un 44.5 37 0.0008 32.4 4.6 21 239-259 37-57 (107)
125 cd07824 SRPBCC_6 Ligand-bindin 44.3 2.1E+02 0.0046 27.5 10.1 119 404-548 8-129 (146)
126 smart00338 BRLZ basic region l 43.6 77 0.0017 27.0 6.1 40 194-254 24-63 (65)
127 PF07407 Seadorna_VP6: Seadorn 42.4 29 0.00062 39.1 4.0 23 197-219 33-55 (420)
128 PRK14872 rod shape-determining 41.7 23 0.00051 40.1 3.3 41 197-255 58-98 (337)
129 COG1792 MreC Cell shape-determ 41.4 49 0.0011 36.7 5.7 42 195-254 65-106 (284)
130 PRK13169 DNA replication intia 40.1 45 0.00098 32.1 4.5 19 239-257 37-55 (110)
131 KOG1146 Homeobox protein [Gene 39.2 15 0.00033 47.7 1.6 60 135-194 445-504 (1406)
132 COG4026 Uncharacterized protei 39.1 62 0.0013 34.8 5.7 49 189-258 142-190 (290)
133 smart00340 HALZ homeobox assoc 39.0 27 0.00059 28.1 2.3 20 241-260 15-34 (44)
134 cd07823 SRPBCC_5 Ligand-bindin 38.2 15 0.00033 35.4 1.1 26 650-675 3-28 (146)
135 PF00170 bZIP_1: bZIP transcri 36.9 1.3E+02 0.0028 25.5 6.5 23 195-217 25-47 (64)
136 PF14389 Lzipper-MIP1: Leucine 36.8 1.8E+02 0.004 26.7 7.8 70 187-259 6-75 (88)
137 KOG4403 Cell surface glycoprot 34.1 98 0.0021 36.2 6.7 26 339-365 398-423 (575)
138 PF06785 UPF0242: Uncharacteri 33.8 51 0.0011 37.3 4.3 72 181-264 54-125 (401)
139 PF15058 Speriolin_N: Sperioli 32.7 58 0.0013 34.3 4.2 39 199-259 8-46 (200)
140 PRK00888 ftsB cell division pr 32.3 38 0.00081 32.1 2.7 42 177-219 16-57 (105)
141 cd07819 SRPBCC_2 Ligand-bindin 31.8 34 0.00074 31.8 2.3 29 648-676 4-32 (140)
142 cd07812 SRPBCC START/RHO_alpha 31.6 3.6E+02 0.0077 23.7 11.1 35 402-440 4-38 (141)
143 KOG4571 Activating transcripti 31.6 1.2E+02 0.0027 33.8 6.7 45 191-256 243-287 (294)
144 cd08865 SRPBCC_10 Ligand-bindi 31.4 29 0.00062 32.0 1.7 28 649-676 2-29 (140)
145 PF10604 Polyketide_cyc2: Poly 31.4 44 0.00094 30.9 3.0 28 649-676 5-32 (139)
146 KOG3119 Basic region leucine z 30.8 96 0.0021 34.1 5.9 23 240-262 231-253 (269)
147 cd07821 PYR_PYL_RCAR_like Pyra 30.0 38 0.00082 31.3 2.3 27 649-675 4-30 (140)
148 KOG2761 START domain-containin 29.7 26 0.00056 37.5 1.2 182 609-833 25-213 (219)
149 cd05018 CoxG Carbon monoxide d 29.0 29 0.00064 32.4 1.4 27 650-676 5-31 (144)
150 cd08866 SRPBCC_11 Ligand-bindi 28.8 35 0.00077 32.3 1.9 28 649-676 2-29 (144)
151 cd08901 SRPBCC_CalC_Aha1-like_ 28.7 34 0.00074 32.8 1.8 27 648-674 2-28 (136)
152 PF14197 Cep57_CLD_2: Centroso 28.6 1.3E+02 0.0027 26.7 5.1 19 239-257 48-66 (69)
153 cd07817 SRPBCC_8 Ligand-bindin 28.1 41 0.00089 31.3 2.2 28 649-676 3-30 (139)
154 PRK03975 tfx putative transcri 28.0 57 0.0012 32.7 3.2 47 139-191 5-51 (141)
155 cd08862 SRPBCC_Smu440-like Lig 26.2 46 0.001 30.9 2.2 30 647-676 2-31 (138)
156 cd07814 SRPBCC_CalC_Aha1-like 26.2 39 0.00085 31.4 1.7 28 649-676 3-30 (139)
157 PF12824 MRP-L20: Mitochondria 25.8 1.2E+02 0.0026 31.1 5.2 47 138-186 83-129 (164)
158 TIGR00219 mreC rod shape-deter 25.5 1.9E+02 0.0041 32.0 7.0 43 201-261 64-107 (283)
159 cd07812 SRPBCC START/RHO_alpha 25.1 47 0.001 29.4 1.9 27 650-676 3-29 (141)
160 TIGR03752 conj_TIGR03752 integ 25.1 1.5E+02 0.0032 35.3 6.3 24 195-218 72-95 (472)
161 cd07825 SRPBCC_7 Ligand-bindin 25.0 49 0.0011 31.3 2.1 26 650-675 4-29 (144)
162 PF05494 Tol_Tol_Ttg2: Toluene 24.8 1.7E+02 0.0037 29.4 6.1 56 434-494 85-140 (170)
163 cd06171 Sigma70_r4 Sigma70, re 24.8 27 0.00059 26.7 0.3 43 140-187 10-52 (55)
164 KOG4343 bZIP transcription fac 24.2 81 0.0018 37.8 4.0 22 199-220 312-333 (655)
165 PF04545 Sigma70_r4: Sigma-70, 24.2 51 0.0011 26.3 1.7 39 140-183 4-42 (50)
166 PRK13729 conjugal transfer pil 24.1 1.6E+02 0.0034 35.1 6.3 58 184-255 64-121 (475)
167 TIGR02449 conserved hypothetic 23.8 2.2E+02 0.0047 25.1 5.5 17 201-217 12-28 (65)
168 PF04967 HTH_10: HTH DNA bindi 23.6 83 0.0018 26.4 2.9 37 141-177 1-39 (53)
169 KOG3119 Basic region leucine z 23.3 35 0.00077 37.4 0.9 26 239-264 223-248 (269)
170 PRK00888 ftsB cell division pr 23.1 1E+02 0.0022 29.3 3.7 37 181-217 26-62 (105)
171 cd07818 SRPBCC_1 Ligand-bindin 22.9 1.4E+02 0.0031 28.4 4.9 32 648-679 4-35 (150)
172 PF03364 Polyketide_cyc: Polyk 21.3 4.2E+02 0.0092 24.4 7.7 103 406-536 2-106 (130)
173 KOG3156 Uncharacterized membra 21.1 2.4E+02 0.0052 30.3 6.3 48 194-261 92-139 (220)
174 KOG3755 SATB1 matrix attachmen 21.0 24 0.00052 42.5 -1.0 61 133-193 691-758 (769)
175 KOG0288 WD40 repeat protein Ti 20.8 1.9E+02 0.0041 33.9 5.9 24 504-528 324-347 (459)
176 cd07822 SRPBCC_4 Ligand-bindin 20.0 76 0.0016 29.3 2.3 27 650-676 4-30 (141)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=1.3e-89 Score=709.21 Aligned_cols=229 Identities=61% Similarity=1.029 Sum_probs=221.0
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHh
Q 003251 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (836)
Q Consensus 337 ~~~l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~l 416 (836)
|++|+|||++||+||++|||+++|||+++.+++ +|+||+|||.++|++..|.++.||++|||||||+|+||+.+|||+|
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~-~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMK-PEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCC-ccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 578999999999999999999999999998877 7999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCceEEEEEEecCCccC
Q 003251 417 MDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE 496 (836)
Q Consensus 417 mD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~ 496 (836)
||+++|.++||+||++|+|++||++|.+|+|||+|||||+|||+||||||+|||||||||||++||+|||||||+|..+.
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~ 159 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT 159 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred CCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003251 497 TSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (836)
Q Consensus 497 ~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 566 (836)
.+..+.++||||+|||||||||+|||||||||||+|||++.+|.+||+|++||+||||+||+++||||||
T Consensus 160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 4434458999999999999999999999999999999999999999999999999999999999999997
No 2
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.74 E-value=1.3e-17 Score=169.03 Aligned_cols=202 Identities=22% Similarity=0.333 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHhhcCCCCceeecc--CCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh
Q 003251 342 ELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (836)
Q Consensus 342 ~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~ 419 (836)
|+|+++|.+++++++.++.-|.... ++. +.|.+..+.. .+..+..-|..++|...+.++++.|+|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~k~~~~v~~~~~~~~~~~~~~ 68 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNG-------DVYYKKVSPS-----DSCPIKMFKAEGVVPASPEQVVEDLLDD 68 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTT-------CEEEEEEECS-----SSTSCEEEEEEEEESSCHHHHHHHHHCG
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCC-------eEEEEEeCcc-----ccccceEEEEEEEEcCChHHHHHHHHhh
Confidence 5899999999999999999998875 332 1222222111 1246778999999999999999999998
Q ss_pred h-hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCceEEEEEEecCCccCCC
Q 003251 420 N-RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 498 (836)
Q Consensus 420 ~-~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~~~ 498 (836)
. +|-.++- .++.++.++.+ ..|..++.++..++|+.| |||.++|++++.++|.|+|+..|++.-...+
T Consensus 69 ~~~Wd~~~~----~~~~le~~~~~------~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~ 137 (206)
T PF01852_consen 69 REQWDKMCV----EAEVLEQIDED------TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPP 137 (206)
T ss_dssp GGHHSTTEE----EEEEEEEEETT------EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSST
T ss_pred Hhhcccchh----hheeeeecCCC------CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccc
Confidence 8 9998844 47777777743 578888889999999999 9999999999999999999999998654433
Q ss_pred CCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003251 499 GAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (836)
Q Consensus 499 ~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 566 (836)
..+.++|+..++||++|++.++|.|+||+|-|++..-+...-+++.++.+...--.+.+.+.|++|++
T Consensus 138 ~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 138 NSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp T-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred cccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 13358999999999999999999999999999999999999999999999999889999999988865
No 3
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.71 E-value=4.3e-16 Score=158.34 Aligned_cols=202 Identities=34% Similarity=0.523 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHhhcCCCCceeeccC--CCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhh-HHHHhcCh
Q 003251 343 LALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLA-LVETLMDP 419 (836)
Q Consensus 343 lA~~Am~El~~la~~~eplWi~~~~--~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~-LVe~lmD~ 419 (836)
.|+.++.|+++++...+..|....+ .+ ..|.+.+ .+.+..+.+-|..++|...+.+ ++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~-------~~~~~~~------~~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~ 68 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENG-------DEVRSIL------SPGRSPGEASRAVGVVPMVCADLVEELMDDL 68 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCc-------ceEEEEc------cCCCCceEEEEEEEEEecChHHHHHHHHhcc
Confidence 3678899999999999999998764 22 1111111 1123557899999999999998 55666665
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCceEEEEEEecCCccCCCC
Q 003251 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSG 499 (836)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~~~~ 499 (836)
.+...+-..+..++.++.++.+ ..|......+.. +|+ ..|||.++|++++.++|.|+|+..|++.-.. +.
T Consensus 69 -~~r~~Wd~~~~~~~~ie~~~~~------~~i~~~~~~~~~-~p~-~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-p~ 138 (206)
T smart00234 69 -RYRPEWDKNVAKAETLEVIDNG------TVIYHYVSKFVA-GPV-SPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-PP 138 (206)
T ss_pred -cchhhCchhcccEEEEEEECCC------CeEEEEEEeccc-CcC-CCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-CC
Confidence 2222233334557888877643 233333333333 354 5599999999999999999999999986432 21
Q ss_pred CCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 003251 500 APAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 567 (836)
Q Consensus 500 ~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqcer 567 (836)
.+.++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+.++.++....+++|.+.|+++|++
T Consensus 139 ~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~~ 206 (206)
T smart00234 139 TSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCAK 206 (206)
T ss_pred CCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 23589999999999999999999999999999999998889999999999999999999999999973
No 4
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.66 E-value=8e-17 Score=173.26 Aligned_cols=69 Identities=32% Similarity=0.442 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhh
Q 003251 129 ADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (836)
Q Consensus 129 ~~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 197 (836)
...++|||+|..|+..|+.+||+.|++.+|.+..+|++||+.|.|++.||||||||||-|.||+++.++
T Consensus 148 t~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk~ 216 (307)
T KOG0842|consen 148 TGKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDKA 216 (307)
T ss_pred cccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhhh
Confidence 345677888889999999999999999999999999999999999999999999999999998776644
No 5
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.59 E-value=7e-16 Score=157.68 Aligned_cols=80 Identities=33% Similarity=0.517 Sum_probs=74.4
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhhhhHHHHHhHHHHHhhhhHH
Q 003251 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIR 216 (836)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ 216 (836)
++.|+|.+|+..||+.|+...|..+.++..||++|||.+|||+|||||||+|||.++...+...|+.+++.|+.+|..+.
T Consensus 53 kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq 132 (198)
T KOG0483|consen 53 KKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQ 132 (198)
T ss_pred ccccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHH
Confidence 33479999999999999999999999999999999999999999999999999999999999999999999998765554
No 6
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.59 E-value=1.6e-15 Score=153.72 Aligned_cols=66 Identities=33% Similarity=0.427 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
.+.+|||.|+.|+..|+..||..|+..+|.+..+|..||++|.|++.||||||||||.||||+...
T Consensus 100 g~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~aa 165 (268)
T KOG0485|consen 100 GDDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQYAA 165 (268)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHHhh
Confidence 345788899999999999999999999999999999999999999999999999999999987644
No 7
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.58 E-value=9.2e-16 Score=157.23 Aligned_cols=76 Identities=26% Similarity=0.356 Sum_probs=68.5
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhhhh
Q 003251 124 DDLDAADNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENS 199 (836)
Q Consensus 124 ~~~~~~~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~ 199 (836)
+....++.+|.||.||.|+.-||+.|.+.|+++.|.-..+|.+||..|||+..||||||||||.|.||..+..+..
T Consensus 112 e~~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k~g~~~ 187 (245)
T KOG0850|consen 112 ERRPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKKQGSGP 187 (245)
T ss_pred eeccCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHhcCCCc
Confidence 3445567778899999999999999999999999999999999999999999999999999999999988755544
No 8
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.58 E-value=1e-15 Score=166.58 Aligned_cols=66 Identities=36% Similarity=0.473 Sum_probs=61.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
..+|+||.|+.||..|+.+||+.|++.+|.+..+|.+||++|||+..|||+||||||+||||+...
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 347778889999999999999999999999999999999999999999999999999999987655
No 9
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.56 E-value=8.2e-16 Score=164.18 Aligned_cols=65 Identities=34% Similarity=0.475 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHh
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 196 (836)
.+.||.|+.||..|+.+||+.|+.++|.++..|.|||..|.|+++||||||||||+||||..+..
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~~ 221 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKAK 221 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhccc
Confidence 45688899999999999999999999999999999999999999999999999999999866553
No 10
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.55 E-value=2e-15 Score=149.79 Aligned_cols=65 Identities=34% Similarity=0.478 Sum_probs=61.7
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhh
Q 003251 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 197 (836)
+.||.||.||.+|+..||..|+.++|..-.+|++||+.|+|++.||||||||||+|.||++.+.+
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~k 165 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQEDK 165 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHhh
Confidence 66888999999999999999999999999999999999999999999999999999999887753
No 11
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.54 E-value=6.5e-15 Score=158.68 Aligned_cols=64 Identities=39% Similarity=0.445 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
++.||||.-+|+.|+.+||+.|..+.|.+.+.|.+|++.|+|++|||||||||||+|+||..++
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re 296 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNRE 296 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhh
Confidence 4557778889999999999999999999999999999999999999999999999999997754
No 12
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.54 E-value=4.3e-15 Score=153.90 Aligned_cols=70 Identities=31% Similarity=0.430 Sum_probs=65.1
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhhhhHHHHHhH
Q 003251 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (836)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~ 206 (836)
-||.||..|+++||+.|++.+||+...|+-||.++.|.+.+|+|||||||+||||+.++.......+|+-
T Consensus 144 ~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maeyg 213 (332)
T KOG0494|consen 144 FRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEYG 213 (332)
T ss_pred ccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhhc
Confidence 3788999999999999999999999999999999999999999999999999999999988777766654
No 13
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.54 E-value=1.5e-15 Score=138.47 Aligned_cols=65 Identities=31% Similarity=0.533 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
..+|+||-|+.||..|+.+||+.|.+.+||+...|++||.++.|++.+|||||||||+|.||+.+
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr 77 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQER 77 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999997543
No 14
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.47 E-value=1.2e-14 Score=151.31 Aligned_cols=67 Identities=31% Similarity=0.412 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhh
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 197 (836)
-+.|-|.|.++|..|..+||+.|..++|.++.++.|||.-|+|++|||||||||||+|+||..+++-
T Consensus 196 tRTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 196 TRTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKKR 262 (317)
T ss_pred eecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHHH
Confidence 3445577888999999999999999999999999999999999999999999999999998776643
No 15
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.45 E-value=6e-14 Score=141.77 Aligned_cols=65 Identities=38% Similarity=0.505 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
+.+..||.|+-||..|+..||+.|++.+|.+..+|.+++..|.|++.||||||||||+|.||.++
T Consensus 140 Khk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 140 KHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 34455788999999999999999999999999999999999999999999999999999998654
No 16
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.45 E-value=4.7e-14 Score=144.31 Aligned_cols=67 Identities=30% Similarity=0.513 Sum_probs=62.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHh
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 196 (836)
..+|.||.||+||..|+++||.+|.+..|||...|++||.+|+|.+.+|||||+|||+|+|++++.+
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 3567789999999999999999999999999999999999999999999999999999999877664
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.41 E-value=9.3e-14 Score=114.52 Aligned_cols=57 Identities=47% Similarity=0.737 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
||+|+.||.+|+..||..|..++||+..+++.||.++||++.||+.||||||.++||
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567889999999999999999999999999999999999999999999999999985
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.36 E-value=3.3e-13 Score=140.08 Aligned_cols=59 Identities=36% Similarity=0.580 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
||.|+.||.+||+.|++.|++++|.++..|++||.+|+|.+.||||||||+|+|.||-.
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 56788999999999999999999999999999999999999999999999999999744
No 19
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.33 E-value=4.8e-13 Score=141.36 Aligned_cols=66 Identities=30% Similarity=0.366 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
...+-||.|+.||.+||..||+.|-+..|-+++.|.+||..|+|++..|||||||||+|+|||..-
T Consensus 177 a~dqmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRla 242 (408)
T KOG0844|consen 177 ADDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLA 242 (408)
T ss_pred ccHHHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhhh
Confidence 344568899999999999999999999999999999999999999999999999999999986543
No 20
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.25 E-value=1.4e-10 Score=115.08 Aligned_cols=186 Identities=19% Similarity=0.304 Sum_probs=137.9
Q ss_pred HHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh---hhh
Q 003251 346 AAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP---NRW 422 (836)
Q Consensus 346 ~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~---~~W 422 (836)
+|..+++.+.+.+ .-|-...+.+ +..-|.+.++.. ....-|..+.|..++.++.++|+|. .+|
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~-----~v~vy~~~~~~~--------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w 67 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD-----GVKIYTKPYEDS--------GLKLLKAEGVIPASPEQVFELLMDIDLRKKW 67 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC-----cEEEEEecCCCC--------CceeEEEEEEECCCHHHHHHHHhCCchhhch
Confidence 4667888887766 6798764432 122244443222 3467899999999999999999994 445
Q ss_pred hhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCceEEEEEEecCCccCCCCCCC
Q 003251 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPA 502 (836)
Q Consensus 423 ~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~~~~~~~ 502 (836)
-.. +.+++.++.++. ...++|..+..|.| +..|||.++|++.+.++|.++|+..|+|.-. .|..+.
T Consensus 68 ~~~----~~~~~vl~~~~~--------~~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~-~p~~~~ 133 (193)
T cd00177 68 DKN----FEEFEVIEEIDE--------HTDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDS-HPKEKG 133 (193)
T ss_pred hhc----ceEEEEEEEeCC--------CeEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCC-CCCCCC
Confidence 432 334555555432 27899999999999 9999999999999999999999999998741 122225
Q ss_pred ccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHH
Q 003251 503 FVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 563 (836)
Q Consensus 503 ~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqR 563 (836)
++|++.+++|++|+++++|.|+||++-|++..-+.. ..++++.+.-.+..++..++.
T Consensus 134 ~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 134 YVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred cEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 799999999999999999999999999999886543 345666666666777766644
No 21
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.24 E-value=5.8e-12 Score=134.29 Aligned_cols=62 Identities=31% Similarity=0.529 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.|+||.|+.||..|+++||..|++++||+...|++||...+|++.+|+|||.|||+||||+.
T Consensus 110 ~KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkrE 171 (351)
T KOG0486|consen 110 SKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 171 (351)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhhh
Confidence 46778899999999999999999999999999999999999999999999999999999644
No 22
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.23 E-value=5.5e-12 Score=125.20 Aligned_cols=65 Identities=32% Similarity=0.522 Sum_probs=59.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhh
Q 003251 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 197 (836)
..+++|+|.|.+|+..|++.|+.++||+...|.+|+..|+|+++-||+||||||++.|++.....
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~~~ 114 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSGKV 114 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhcccch
Confidence 34666778999999999999999999999999999999999999999999999999998766544
No 23
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.22 E-value=1e-11 Score=103.92 Aligned_cols=53 Identities=15% Similarity=0.378 Sum_probs=50.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCC----CCHHHHHHHHHhhcccceeeeeccchhh
Q 003251 134 RKKRYHRHTPQQIQELESLFKECPH----PDEKQRLELSKRLCLETRQVKFWFQNRR 186 (836)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~----Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 186 (836)
+||.||.||.+|++.||..|...+| |+...|.+||.++||++++|||||||-+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4788999999999999999999999 9999999999999999999999999964
No 24
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.22 E-value=1.4e-12 Score=127.94 Aligned_cols=66 Identities=33% Similarity=0.440 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhh
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 197 (836)
-+++|-|+.|+..|+..||+.|+..+|.+..+|.+||..|+|+++|||.||||||+|.||++++.+
T Consensus 98 ~~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~~ 163 (194)
T KOG0491|consen 98 CRRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNNQ 163 (194)
T ss_pred HHhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 346778999999999999999999999999999999999999999999999999999998776644
No 25
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.22 E-value=5.2e-12 Score=103.26 Aligned_cols=55 Identities=45% Similarity=0.786 Sum_probs=51.7
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHH
Q 003251 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (836)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (836)
+.|++|+.+|+..||..|..++||+..++.+||.++||+..||+.||+|||.+.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 4567799999999999999999999999999999999999999999999998754
No 26
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.21 E-value=7.2e-12 Score=103.06 Aligned_cols=56 Identities=48% Similarity=0.832 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
+++..++.+|+..||..|..++||+..++.+||.++||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999999999999999999999885
No 27
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.19 E-value=1.6e-11 Score=129.19 Aligned_cols=78 Identities=26% Similarity=0.404 Sum_probs=71.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhhhhHHHHHhHHHHH
Q 003251 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRA 210 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~ 210 (836)
..||.|+.+|..|++.|+..|+..++|-+..|++|+.++||..|.|||||||||+|+||.++......+.|-+..++.
T Consensus 166 ~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyfrsmK~ 243 (383)
T KOG4577|consen 166 SNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYFRSMKR 243 (383)
T ss_pred ccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHHHHhhc
Confidence 347889999999999999999999999999999999999999999999999999999999999888888877765543
No 28
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.18 E-value=1.3e-11 Score=135.79 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
..|||||||.|+......||++|.+|++|+..++.+||.+|+|++..|+|||||||.|.||..
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~~ 353 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRIT 353 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccCC
Confidence 347888999999999999999999999999999999999999999999999999999999644
No 29
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.10 E-value=2.2e-11 Score=124.04 Aligned_cols=66 Identities=33% Similarity=0.455 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
+..+||..|..|+-.||..||+.|+..+|+-..+|.+||..+|+++.||+|||||||+||||+..-
T Consensus 163 kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 163 LNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred cCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhcc
Confidence 345677778889999999999999999999999999999999999999999999999999986543
No 30
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.05 E-value=1.3e-08 Score=106.11 Aligned_cols=201 Identities=13% Similarity=0.186 Sum_probs=147.7
Q ss_pred HHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEE-EechhhHHHHhcCh---h
Q 003251 345 LAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDP---N 420 (836)
Q Consensus 345 ~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V-~~~~~~LVe~lmD~---~ 420 (836)
++.+++|+.++..+ .-|-...+... .+.|.+. ..+...-.-|..+++ ...+..+.+.|+|. .
T Consensus 9 ~~~~~~~~~~~~~~-~~W~~~~~~~g---------i~iy~r~----~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~ 74 (222)
T cd08871 9 DADFEEFKKLCDST-DGWKLKYNKNN---------VKVWTKN----PENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRK 74 (222)
T ss_pred HHHHHHHHHHhcCC-CCcEEEEcCCC---------eEEEEee----CCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhh
Confidence 37889999999754 47987643321 2233221 122333455776765 57888999999995 6
Q ss_pred hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCceEEEEEEecCCccCCCCC
Q 003251 421 RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGA 500 (836)
Q Consensus 421 ~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~~~~~ 500 (836)
+|-..+ ..++.++.+. ....++|..+..|-| |..|||.++|..+..+ |.++|+..|++.-. .|..
T Consensus 75 ~Wd~~~----~e~~~ie~~d--------~~~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~-~P~~ 139 (222)
T cd08871 75 TWDSNM----IESFDICQLN--------PNNDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKK-YPPR 139 (222)
T ss_pred hhhhhh----ceeEEEEEcC--------CCCEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCC-CCCC
Confidence 676652 2356666554 223789999999988 8999999999998776 88899999987432 2222
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 003251 501 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSA 578 (836)
Q Consensus 501 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqcerla~~~~~~i~~ 578 (836)
..++|.....+|++|++++++.|+|||+-|++..-+ +|. -+++..+.-.+-.++..|+++|+...-.+..+-|.
T Consensus 140 ~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~~ 213 (222)
T cd08871 140 KGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNPE 213 (222)
T ss_pred CCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 358999999999999999999999999999988765 443 34666666777899999999999999988877664
No 31
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.97 E-value=2.4e-08 Score=102.89 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcC-
Q 003251 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD- 418 (836)
Q Consensus 340 l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD- 418 (836)
+-.+|..|.+|++++.. .+.-|....+.. +.+.|.+. ...+..-.-|..+.+..++.++++.|+|
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~~~---------~i~v~~~~----~~~~~~~~~k~~~~i~~~~~~v~~~l~d~ 68 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKTVK---------NITVSWKP----STEFTGHLYRAEGIVDALPEKVIDVIIPP 68 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEcCC---------CcEEEEec----CCCCCCEEEEEEEEEcCCHHHHHHHHHhc
Confidence 34688899999999987 447897653221 12222221 1122222358888999999999999998
Q ss_pred ----hhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecc-cccccccceeeEEeeeceecCceEEEEEEecCC
Q 003251 419 ----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQV-LSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDT 493 (836)
Q Consensus 419 ----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v-~SPLvp~Re~~flRyckq~~~g~waVvDvSld~ 493 (836)
+.+|... +..++.++-|.. ...++|..+-- +.++|..|||.++||.++.++|.++|+-+|++.
T Consensus 69 ~~~~r~~Wd~~----~~~~~~le~id~--------~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h 136 (206)
T cd08867 69 CGGLRLKWDKS----LKHYEVLEKISE--------DLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI 136 (206)
T ss_pred Ccccccccccc----ccceEEEEEeCC--------CeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC
Confidence 4678755 455777776642 12456653322 235799999999999999999999999999864
Q ss_pred ccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 003251 494 IRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 565 (836)
Q Consensus 494 ~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqc 565 (836)
-. .|..+.++|+...++|++|++.+ ++.|+|||+-|++.--+ +| +-++++.++=+.--|+..|++|.
T Consensus 137 p~-~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP---~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 137 PE-RPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IP---QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred CC-CCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCC-Cc---HHHHHhhhhhhHHHHHHHHHHhc
Confidence 32 22223589999999999999886 57899999999987643 33 45577777777778999998774
No 32
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.96 E-value=2e-08 Score=103.65 Aligned_cols=196 Identities=15% Similarity=0.221 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHH-hcC
Q 003251 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVET-LMD 418 (836)
Q Consensus 340 l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~-lmD 418 (836)
-..+++.|++|++.+.. ++-|-...+.. +..+.|.+.. .| ..-.-|..++|...+.++++. |.|
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~--------~~i~i~~r~~----~~-~~~~~k~~~~i~~~~~~v~~~l~~d 70 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTT--------WGDVVYSRNV----PG-VGKVFRLTGVLDCPAEFLYNELVLN 70 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecC--------CCCEEEEEEc----CC-CceEEEEEEEEcCCHHHHHHHHHcC
Confidence 57888999999999954 55897654221 0122232221 11 114578889999999999764 545
Q ss_pred h---hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccc-ccccccceeeEEeeeceecCceEEEEEEecCCc
Q 003251 419 P---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (836)
Q Consensus 419 ~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~-SPLvp~Re~~flRyckq~~~g~waVvDvSld~~ 494 (836)
. .+|-..| ..++.++.+. +...++|.-+.-+ .++|..|||.++|+.++.+ +.++|+..|++.-
T Consensus 71 ~~~~~~Wd~~~----~~~~~i~~~d--------~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~ 137 (208)
T cd08868 71 VESLPSWNPTV----LECKIIQVID--------DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHP 137 (208)
T ss_pred ccccceecCcc----cceEEEEEec--------CCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCC
Confidence 3 5677662 2244444443 2235666444333 3689999999999999866 6799999998732
Q ss_pred cCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 003251 495 RETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 568 (836)
Q Consensus 495 ~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqcerl 568 (836)
. .|..+.++|+...++|++|+++++ +.|+|+|+-|++..-+ +|.- ++++.+.-+.-.++..|+++|+.|
T Consensus 138 ~-~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~---lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 138 A-MPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQY---LVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred C-CCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-Ccce---eeehhhHHHHHHHHHHHHHHHhhC
Confidence 1 122235899999999999999987 6899999999987755 4432 377778888889999999998753
No 33
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.92 E-value=6.8e-10 Score=114.96 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
..++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++..
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEER 120 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhhc
Confidence 4566788899999999999999999999999999999999999999999999999999997654
No 34
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.76 E-value=1.5e-07 Score=97.66 Aligned_cols=171 Identities=15% Similarity=0.190 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCC-CCCCceeeeeceeEEEechhhHHHHhcCh
Q 003251 341 LELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMDP 419 (836)
Q Consensus 341 ~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~-~~g~~~EAsR~~g~V~~~~~~LVe~lmD~ 419 (836)
..|+++|++|++++-+ +.-.|-.-.++. +...+ .+ ...+.+---|..|+|..++.+|+|.+.|.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~k~~~---------~~~v~-----~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~ 68 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVVKTSK---------KITVS-----WKPSRKYHGNLYRVEGIIPESPAKLIQFMYQP 68 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEEecCC---------ceEEE-----EEEcCCCCceEEEEEEEecCCHHHHHHHHhcc
Confidence 5788999999999977 567897654331 01111 12 12344456799999999999999999987
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeec-ccccccccceeeEEeeeceecCceEEEEEEecCCccCCC
Q 003251 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETS 498 (836)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~-v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~~~~ 498 (836)
+...+-=+ .+..++.++-|. +...+.|.-++ .+-++|-+|||..+||.++.++|.++|...|++.-. -|
T Consensus 69 e~r~~Wd~-~~~~~~iie~Id--------~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~-~P 138 (204)
T cd08904 69 EHRIKWDK-SLQVYKMLQRID--------SDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQ-CP 138 (204)
T ss_pred chhhhhcc-cccceeeEEEeC--------CCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCC-CC
Confidence 64443222 345566666554 22256675554 345789999999999999999999999999986432 12
Q ss_pred CCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccc
Q 003251 499 GAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDES 536 (836)
Q Consensus 499 ~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~ 536 (836)
..+.++|++..|+||+|++.+++ +|+++|+-++++.-+
T Consensus 139 p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 139 PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 22358999999999999999874 899999999776643
No 35
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.66 E-value=1.2e-08 Score=113.81 Aligned_cols=65 Identities=31% Similarity=0.504 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
..++.+|.|+.|+..|+..||+.|+.++||+...|++||+++++++.+|++||+|||+|++|+..
T Consensus 172 ~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 172 LQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred ccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 34555677899999999999999999999999999999999999999999999999999997553
No 36
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.63 E-value=1.1e-06 Score=91.31 Aligned_cols=193 Identities=13% Similarity=0.213 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh
Q 003251 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (836)
Q Consensus 340 l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~ 419 (836)
..+++++|+++++.+-+ .+.-|-...+.. +.+.|.+... .+..=.-|.-|+|..++.+|++.|+|.
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~~---------~i~v~~~~~~----~~~~~~~k~e~~i~~s~~~~~~~l~d~ 68 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRTN---------EVAVSWRPSA----EFAGNLYKGEGIVYATLEQVWDCLKPA 68 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcCC---------CEEEEeeecC----CCCCcEEEEEEEecCCHHHHHHHHHhc
Confidence 36789999999999974 677897654321 2233322110 111112688899999999999999976
Q ss_pred -----hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccccc---ccccceeeEEeeeceecCceEEEEEEec
Q 003251 420 -----NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP---LVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (836)
Q Consensus 420 -----~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP---Lvp~Re~~flRyckq~~~g~waVvDvSl 491 (836)
.+|-.. +..++.++-|. +...+.|. ..+.| +|.+|||..+|+.++.++|.++|.-.|.
T Consensus 69 ~~~~r~~W~~~----~~~~~vle~id--------~~~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv 134 (208)
T cd08903 69 AGGLRVKWDQN----VKDFEVVEAIS--------DDVSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNV 134 (208)
T ss_pred cchhhhhhhhc----cccEEEEEEec--------CCEEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEec
Confidence 588877 22345555444 12233443 45555 7999999999999999999988777676
Q ss_pred CCccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 003251 492 DTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 565 (836)
Q Consensus 492 d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqc 565 (836)
..-. -|..+.++|++..|+|++|.+.++ +.|+|+|+-|++.-- .+| +.++++.++=...-.+..|+++.
T Consensus 135 ~h~~-~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 135 EHPL-CPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSG-YLP---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred cCCC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCC-CcC---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 5421 122235899999999999999964 589999998887642 344 34555444434445566665554
No 37
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.55 E-value=2.4e-06 Score=88.89 Aligned_cols=129 Identities=17% Similarity=0.231 Sum_probs=99.0
Q ss_pred CCceeeeeceeEEEechhhHH-HHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceee
Q 003251 393 GFVTEASRETGMVIINSLALV-ETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVN 471 (836)
Q Consensus 393 g~~~EAsR~~g~V~~~~~~LV-e~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~ 471 (836)
+...-+-|....|.-.+..++ .+|.++.+|-..|- .+++++.|. +...+.|--+.-|-|+ |.|||+
T Consensus 48 ~~~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~----~~~~ie~ld--------~~tdi~~y~~~~~~P~-~~RD~v 114 (205)
T cd08909 48 GNPLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFL----QWKVVETLD--------KQTEVYQYVLNCMAPH-PSRDFV 114 (205)
T ss_pred CCceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcc----eeEEEEEeC--------CCcEEEEEEeecCCCC-CCCEEE
Confidence 344456777777777777664 46677888888743 377777665 2246777777777776 999999
Q ss_pred EEeeece-ecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccc
Q 003251 472 FLRFCKQ-HAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES 536 (836)
Q Consensus 472 flRyckq-~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~ 536 (836)
.+|+-++ +++|.++|+..|++.....+ ..++|+..+=+|++|+++++|.|+||++-|++..-+
T Consensus 115 ~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 115 VLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred EEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 9999765 46999999999999764322 147999999999999999999999999999987543
No 38
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.55 E-value=4.5e-08 Score=103.73 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
..|||+|+.+...+.+.||++|...+.|+.+....+|++|.|....|+|||+|.|+|.||..
T Consensus 307 ~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 307 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred cccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHhh
Confidence 34677889999999999999999999999999999999999999999999999999988743
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.49 E-value=3.1e-06 Score=87.20 Aligned_cols=168 Identities=13% Similarity=0.241 Sum_probs=120.3
Q ss_pred HHHHHHHHHhhcCCCCceeeccC-CCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh-hhh
Q 003251 345 LAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP-NRW 422 (836)
Q Consensus 345 ~~Am~El~~la~~~eplWi~~~~-~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~-~~W 422 (836)
+.+.++|++-+...+.-|.-..+ .| .+| |.|.. +.++..-+=|..++|...+.++++.|+|. .+|
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~~~g-i~I-----~~k~~-------~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~W 70 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSSSDH-VEL-----AFKKV-------DDGHPLRLWRASTEVEAPPEEVLQRILRERHLW 70 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEecCCc-EEE-----EEEeC-------CCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhcc
Confidence 46788999999988999976532 23 122 22221 22445567788889999999999877764 456
Q ss_pred hhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeece-ecCceEEEEEEecCCccCCCCCC
Q 003251 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGAP 501 (836)
Q Consensus 423 ~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq-~~~g~waVvDvSld~~~~~~~~~ 501 (836)
-.. +.+++.++.|+ ....+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++....-+ +
T Consensus 71 d~~----~~~~~vie~id--------~~~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p--~ 135 (197)
T cd08869 71 DDD----LLQWKVVETLD--------EDTEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVP--L 135 (197)
T ss_pred chh----hheEEEEEEec--------CCcEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCC--C
Confidence 665 23356666554 123578888888877 59999999998875 67889999999986321111 1
Q ss_pred CccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 003251 502 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (836)
Q Consensus 502 ~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 541 (836)
.++|++.+++|++|++..+|.|+|||+-|++.-- .+|.-
T Consensus 136 g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G-~iP~w 174 (197)
T cd08869 136 GGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRG-RSPEW 174 (197)
T ss_pred CCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCC-CCCce
Confidence 4899999999999999999999999999998643 34443
No 40
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.47 E-value=1.7e-06 Score=102.46 Aligned_cols=129 Identities=17% Similarity=0.286 Sum_probs=104.1
Q ss_pred eeeeceeEEEechhhHHHHhcChh----hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeec--cccccccccee
Q 003251 397 EASRETGMVIINSLALVETLMDPN----RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREV 470 (836)
Q Consensus 397 EAsR~~g~V~~~~~~LVe~lmD~~----~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SPLvp~Re~ 470 (836)
-+=|+.|+|...+.+|.|.+|+.+ +|=.. +..++-++-|. |...++|.-++ .+...+-+|||
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~----~~~~~vIE~ID--------~htdI~Y~~~~~~~~~~~ispRDF 294 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCS----FQYGSLVEEVD--------GHTAILYHRLQLDWFPMFVWPRDL 294 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhc----ccceEEEEEec--------CCeEEEEEEeccccccCccCccee
Confidence 577899999999999999999777 66554 45577777663 56678887774 44567777999
Q ss_pred eEEeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecC--C--CccEEEEEEeeeeccccc
Q 003251 471 NFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--N--GYSKVTWVEHAEYDESQV 538 (836)
Q Consensus 471 ~flRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~--n--G~skVtwVeH~e~d~~~v 538 (836)
+++||-+..+||+++|+=+|+..-.- |..+.++|++..|.||+|.+++ + -.|.|+|+-|++..-|..
T Consensus 295 V~~Rywrr~eDGsYvil~~Sv~Hp~c-PP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 295 CYVRYWRRNDDGSYVVLFRSREHENC-GPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEEEEEEEcCCCcEEEeeeeeecCCC-CCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 99999999999999999999875332 2123589999999999999964 3 389999999999988874
No 41
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.44 E-value=2.9e-06 Score=88.23 Aligned_cols=192 Identities=13% Similarity=0.206 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecc--CCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhc
Q 003251 340 FLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLM 417 (836)
Q Consensus 340 l~~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lm 417 (836)
-..++.+|++|++++.+ .+..|-... +.| ..| |.+.||.. | -+-|.-++|..++.+|++.|.
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g-i~v-----~s~~~~~~------~---k~~k~e~~i~~~~~~l~~~l~ 69 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENG-DKV-----LSKVVPDI------G---KVFRLEVVVDQPLDNLYSELV 69 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCC-CEE-----EEEEcCCC------C---cEEEEEEEecCCHHHHHHHHH
Confidence 56889999999999986 666897652 223 111 22333222 1 455667799999999995555
Q ss_pred -Ch---hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccccc--ccccceeeEEeeeceecCceEEEEEEec
Q 003251 418 -DP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSI 491 (836)
Q Consensus 418 -D~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--Lvp~Re~~flRyckq~~~g~waVvDvSl 491 (836)
|. .+|... |.-.++|.... ....++|. ..++.| +|..|||..+|+.++.+++. +++..|.
T Consensus 70 ~d~e~~~~W~~~-------~~~~~vl~~id-----~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~ 135 (209)
T cd08905 70 DRMEQMGEWNPN-------VKEVKILQRIG-----KDTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMAT 135 (209)
T ss_pred hchhhhceeccc-------chHHHHHhhcC-----CCceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEee
Confidence 53 566665 44555554332 12245664 667766 79999999999999986654 5556765
Q ss_pred CCccCCCCCCCccceeecCCcceEeecCC--CccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003251 492 DTIRETSGAPAFVNCRRLPSGCVVQDMPN--GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (836)
Q Consensus 492 d~~~~~~~~~~~~~~~r~PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 566 (836)
+.-. -|..+.++|++..+.|++|+++++ |.|+|+|+-|++..-+ +|. .|++..++=..-.++..|+++.+
T Consensus 136 ~~~~-~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 136 HFGL-MPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred cCCC-CCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 4321 122225899999999999999988 9999999999987655 443 45666666666778888877754
No 42
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.38 E-value=1e-05 Score=84.34 Aligned_cols=196 Identities=10% Similarity=0.167 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeec-cC-CCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHH-HH
Q 003251 339 MFLELALAAMDELVKMAQTDEPLWIRS-FE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ET 415 (836)
Q Consensus 339 ~l~~lA~~Am~El~~la~~~eplWi~~-~~-~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e~ 415 (836)
-....+.+||+++.++... +.-|.-. .+ .| .+.|.+........| |.-++|...+..|. +.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g----------i~V~s~~~~~~~~~f-----k~~~~v~~~~~~l~~~l 68 (209)
T cd08906 5 EYVRQGKEALAVVEQILAQ-EENWKFEKNNDNG----------DTVYTLEVPFHGKTF-----ILKAFMQCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC----------CEEEEeccCCCCcEE-----EEEEEEcCCHHHHHHHH
Confidence 3567899999999999765 4579853 22 34 123322111011223 66677788888995 68
Q ss_pred hcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccccc--ccccceeeEEeeeceecCceEEEEEEecCC
Q 003251 416 LMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCKQHAEGVWAVVDVSIDT 493 (836)
Q Consensus 416 lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--Lvp~Re~~flRyckq~~~g~waVvDvSld~ 493 (836)
|.|.+...+=.+.+ ..++.|+-|+. .--+.| +.-.|.+ .|..|||..+|+.++.+++ ++++..|++.
T Consensus 69 l~D~~~~~~W~~~~-~~~~vi~~~~~--------~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~ 137 (209)
T cd08906 69 ILQPEKMVLWNKTV-SACQVLQRVDD--------NTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH 137 (209)
T ss_pred HhChhhccccCccc-hhhhheeeccC--------CcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec
Confidence 88886554444442 22444444431 123557 6666664 6899999999999998888 5777788764
Q ss_pred ccCCCCCCCccceeecCCcceEeec--CCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003251 494 IRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (836)
Q Consensus 494 ~~~~~~~~~~~~~~r~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 566 (836)
-. -|..+.++|.+..++|++|++. .+|.|+|||+-|++.--+ +| +.|++..++=..-..+..|+++.+
T Consensus 138 ~~-~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP---~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 138 SH-KPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LP---RYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred CC-CCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 31 1222358999999999999985 577999999999987653 33 245666555555556666655543
No 43
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.33 E-value=1.1e-05 Score=83.51 Aligned_cols=192 Identities=14% Similarity=0.160 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCC-CCCCceeeeeceeEEEechhhHHHHhcC
Q 003251 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLK-PNGFVTEASRETGMVIINSLALVETLMD 418 (836)
Q Consensus 340 l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~-~~g~~~EAsR~~g~V~~~~~~LVe~lmD 418 (836)
...+|.++-+++++--+.++-.|-.-.+.+. -.+..+ ..-|.+---|.-|+|.-.+..|++.+-+
T Consensus 3 ~~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~--------------~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~ 68 (202)
T cd08902 3 IASKTTKLQNTLIQYHSILEEEWRVAKKSKD--------------VTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRP 68 (202)
T ss_pred HHHHHHHHHHHHHHhccccccCcEEEEeCCC--------------EEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhc
Confidence 3567888888899987779999976433220 111222 2245555667788998999999999999
Q ss_pred ---hhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCceEEEEEEecCCcc
Q 003251 419 ---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIR 495 (836)
Q Consensus 419 ---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~~ 495 (836)
+.+|=+. |..|+.|+-|.. +++-.-|.=.-.+-++|-+|||.-|||+++.++|. ..|=||++.-.
T Consensus 69 ~~~r~~Wd~~----v~~~~Iie~Id~-------dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~ 136 (202)
T cd08902 69 GPYRLDWDSL----MTSMDIIEEFEE-------NCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEE 136 (202)
T ss_pred ccchhcccch----hhheeHhhhhcC-------CcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCC
Confidence 5599876 455666655542 33322255556777899999999999999999998 77788887543
Q ss_pred CCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHH
Q 003251 496 ETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQ 564 (836)
Q Consensus 496 ~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRq 564 (836)
.- +.++|++..|.||++++.+|| .|+.||+-++++.-+ |=+-++++.++=..=-....|+++
T Consensus 137 ~p---pg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 137 AR---PNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred CC---CCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHHh
Confidence 21 258999999999999999998 677889999777644 334456555444333345555443
No 44
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.15 E-value=1.2e-06 Score=92.80 Aligned_cols=50 Identities=26% Similarity=0.469 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHH
Q 003251 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (836)
Q Consensus 141 fT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (836)
|...-...|..+|.+++||+..++.+||+.+||+..||-.||+|||+|+|
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDR 232 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDR 232 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhh
Confidence 44555678999999999999999999999999999999999999999988
No 45
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.13 E-value=3.9e-05 Score=79.75 Aligned_cols=183 Identities=15% Similarity=0.243 Sum_probs=124.3
Q ss_pred HHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEE-echhhHHHHhcChh---hhhhhcc
Q 003251 352 VKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPN---RWAEMFP 427 (836)
Q Consensus 352 ~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~-~~~~~LVe~lmD~~---~W~~~Fp 427 (836)
+..-+.+.+-|-...+... .+.|.+.. .+...-.=|+.+.+. ..+..|+++|+|.+ +|...
T Consensus 17 ~~~~~~~~~~W~l~~~~~~---------i~Vy~r~~----~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-- 81 (207)
T cd08910 17 LQQPALDGAAWELLVESSG---------ISIYRLLD----EQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY-- 81 (207)
T ss_pred hcCCCCCCCCeEEEEecCC---------eEEEEecc----CCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH--
Confidence 3434455677987654321 22332221 122233678788887 79999999999965 56665
Q ss_pred cccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeece-ecCc--eEEEEEEecCCccCCCCCCCcc
Q 003251 428 CMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEG--VWAVVDVSIDTIRETSGAPAFV 504 (836)
Q Consensus 428 ~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq-~~~g--~waVvDvSld~~~~~~~~~~~~ 504 (836)
++. .++.++ .+ ..++|-.+..|-| |..||+.++|-... ..+| .|+|+..|.+.- .-|....++
T Consensus 82 -~~~---~~~~~~-------~~-~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p-~~P~~~~~V 147 (207)
T cd08910 82 -VKE---LYEKEC-------DG-ETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSLP-QLPEKPGVI 147 (207)
T ss_pred -HHh---heeecC-------CC-CEEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCCC-CCCCCCCCE
Confidence 221 223222 12 3678999999999 99999999964443 3344 689888887632 112223589
Q ss_pred ceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHH
Q 003251 505 NCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 567 (836)
Q Consensus 505 ~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqcer 567 (836)
|....-+|++|++..++.|+|+++-|.+-. -.+|. -+++.....+...|+..|+..|.+
T Consensus 148 Rv~~~~~~~~i~p~~~~~t~i~~~~~~DPg-G~IP~---wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 148 RVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GMIPS---WLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred EEEEEEEEEEEEeCCCCceEEEEEEEeCCC-CcchH---HHHHHHHHHhhHHHHHHHHHHHhc
Confidence 999999999999998889999999998853 23443 257777888889999999888853
No 46
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.03 E-value=0.00012 Score=76.09 Aligned_cols=200 Identities=16% Similarity=0.077 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcCh
Q 003251 340 FLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDP 419 (836)
Q Consensus 340 l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD~ 419 (836)
+++=+...|+|+++..+. +.-|....+.. +.++|-+.. ++-..-+-|.-|++..+...+.++|.|.
T Consensus 3 ~~~~~~~~~~~~~~~l~~-~~~W~~~~~~~---------~i~v~~r~~----~~~~~~~~k~e~~i~~~~~~~~~vl~d~ 68 (215)
T cd08877 3 KIRQEATIMQENLKDLDE-SDGWTLQKESE---------GIRVYYKFE----PDGSLLSLRMEGEIDGPLFNLLALLNEV 68 (215)
T ss_pred hHHHHHHHHHHHHhcccC-CCCcEEeccCC---------CeEEEEEeC----CCCCEEEEEEEEEecCChhHeEEEEehh
Confidence 355566788999988776 56798764331 223322211 1222467788899999999999999999
Q ss_pred hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEE-eeecee-cCceEEEEEEecCCccC-
Q 003251 420 NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL-RFCKQH-AEGVWAVVDVSIDTIRE- 496 (836)
Q Consensus 420 ~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fl-Ryckq~-~~g~waVvDvSld~~~~- 496 (836)
+...+-+|.. ..++.++.++- .-++.|..+-+|-| +..||+.+. +.+.++ ++|..+|+=.|++.-..
T Consensus 69 ~~~~~W~p~~-~~~~~l~~~~~--------~~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~ 138 (215)
T cd08877 69 ELYKTWVPFC-IRSKKVKQLGR--------ADKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEF 138 (215)
T ss_pred hhHhhhcccc-eeeEEEeecCC--------ceEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCccc
Confidence 8777777763 33455544431 13677878888888 888999975 557777 89999999999985432
Q ss_pred -------CCCCC-CccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003251 497 -------TSGAP-AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (836)
Q Consensus 497 -------~~~~~-~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 566 (836)
-|..+ .++|....-+|++|+++++|.|+|+++-|++-.-+-||.= |++...--.+...+..|+++|+
T Consensus 139 ~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 139 LKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred ccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 12233 5799999999999999999999999999966332226653 3444444446667777877765
No 47
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.95 E-value=0.00017 Score=73.10 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=106.5
Q ss_pred eeeceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeec
Q 003251 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 477 (836)
Q Consensus 398 AsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyck 477 (836)
.-|..++|..++.++.+++.|.+.|.+-=|. +...+||..... + -.++|..+..+=| |..|||.++|...
T Consensus 42 ~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~----~~~~~vie~~~~----~-~~i~~~~~~~p~p-vs~Rdfv~~~~~~ 111 (195)
T cd08876 42 EFKAVAEVDASIEAFLALLRDTESYPQWMPN----CKESRVLKRTDD----N-ERSVYTVIDLPWP-VKDRDMVLRSTTE 111 (195)
T ss_pred EEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh----cceEEEeecCCC----C-cEEEEEEEecccc-cCCceEEEEEEEE
Confidence 5588889999999999999999888766554 445555553321 1 2556666666555 7899999876543
Q ss_pred ee-cCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHH
Q 003251 478 QH-AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQR 556 (836)
Q Consensus 478 q~-~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~r 556 (836)
.. ++|..+|.=.|.+.. -|....++|++.+-+|+.|++.++|.|+|+++-|++..-+...-+.+.+. .=+..+
T Consensus 112 ~~~~~~~~~i~~~s~~~~--~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~----~~~~~~ 185 (195)
T cd08876 112 QDADDGSVTITLEAAPEA--LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFA----KDAPYN 185 (195)
T ss_pred EcCCCCEEEEEeecCCcc--CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHH----HHHHHH
Confidence 33 367777766666542 12222478999999999999999999999999999887543334444443 335668
Q ss_pred HHHHHHHHH
Q 003251 557 WVATLQRQC 565 (836)
Q Consensus 557 WlatLqRqc 565 (836)
++++|+++|
T Consensus 186 ~l~~l~~~~ 194 (195)
T cd08876 186 TLENLRKQL 194 (195)
T ss_pred HHHHHHHhh
Confidence 888887765
No 48
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.85 E-value=0.00016 Score=75.33 Aligned_cols=130 Identities=17% Similarity=0.212 Sum_probs=92.9
Q ss_pred CCCCceeeeeceeEEEechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccccccc-c
Q 003251 391 PNGFVTEASRETGMVIINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLV-P 466 (836)
Q Consensus 391 ~~g~~~EAsR~~g~V~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLv-p 466 (836)
..+|.. -++|...+.+|++.|.|.. +|-.+ +.+.+||..-. ....++|.....|=|+. +
T Consensus 44 ~~~~~g-----e~~v~as~~~v~~ll~D~~~r~~Wd~~-------~~~~~vl~~~~-----~d~~i~y~~~~~Pwp~~~~ 106 (205)
T cd08874 44 YHGFLG-----AGVIKAPLATVWKAVKDPRTRFLYDTM-------IKTARIHKTFT-----EDICLVYLVHETPLCLLKQ 106 (205)
T ss_pred cceEEE-----EEEEcCCHHHHHHHHhCcchhhhhHHh-------hhheeeeeecC-----CCeEEEEEEecCCCCCCCC
Confidence 345664 4478889999999998875 56665 66677776432 33467787777666553 9
Q ss_pred cceeeEEeeeceecCceEEEEEEecCC-ccCCCCCCCccceeecCCcceEeec---CCCccEEEEEEeeeecccccc
Q 003251 467 VREVNFLRFCKQHAEGVWAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDM---PNGYSKVTWVEHAEYDESQVH 539 (836)
Q Consensus 467 ~Re~~flRyckq~~~g~waVvDvSld~-~~~~~~~~~~~~~~r~PSGclIq~~---~nG~skVtwVeH~e~d~~~v~ 539 (836)
.|||..+|-....+++.. |.=.|++. ..+.. .+.++|.+.+++|++|+++ ++|.|+||.+-|+|.--..+|
T Consensus 107 ~RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~-~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 107 PRDFCCLQVEAKEGELSV-VACQSVYDKSMPEP-GRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred CCeEEEEEEEEECCCcEE-EEEEecccccCCCC-CCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 999999995555455544 66677765 22211 1148999999999999999 999999999999987533344
No 49
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.83 E-value=0.00027 Score=73.75 Aligned_cols=162 Identities=19% Similarity=0.246 Sum_probs=111.9
Q ss_pred HHHHHHHHHHhhcCCCCceeecc-CCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcC-hhh
Q 003251 344 ALAAMDELVKMAQTDEPLWIRSF-EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD-PNR 421 (836)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~~-~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD-~~~ 421 (836)
-+..+++|++.|..--=-|+.-. ..+ .|+- |. .+..|-..-.-|....+.-.+.+|+..|+| +.+
T Consensus 11 ~~~~~~~l~~e~~~k~k~w~~~~~~~~-~el~----~~--------k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~ 77 (204)
T cd08908 11 LQDCVDGLFKEVKEKFKGWVSYSTSEQ-AELS----YK--------KVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHL 77 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCCc-EEEE----Ee--------ccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHH
Confidence 34677777777764444555421 111 1110 11 123344455667777788888888865555 567
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeec-eecCceEEEEEEecCCccCCCCC
Q 003251 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGA 500 (836)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyck-q~~~g~waVvDvSld~~~~~~~~ 500 (836)
|-.. +..++.++-|+. .-.+.|-.+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.-. .|
T Consensus 78 Wd~~----~~e~~vIe~ld~--------~~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~-~P-- 141 (204)
T cd08908 78 WDVD----LLDSKVIEILDS--------QTEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR-AP-- 141 (204)
T ss_pred HHHH----hhheEeeEecCC--------CceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc-CC--
Confidence 8776 334666666552 12578888889988 7999999997665 578999999999987542 12
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeec
Q 003251 501 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYD 534 (836)
Q Consensus 501 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d 534 (836)
...+|++.+-+|++|+++.+|.|+||.+-|++--
T Consensus 142 ~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPg 175 (204)
T cd08908 142 VAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLR 175 (204)
T ss_pred cCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCC
Confidence 2368999999999999999999999999999753
No 50
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.69 E-value=0.00025 Score=73.75 Aligned_cols=166 Identities=16% Similarity=0.185 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEE-EechhhHHHHhcChhhh
Q 003251 344 ALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMV-IINSLALVETLMDPNRW 422 (836)
Q Consensus 344 A~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V-~~~~~~LVe~lmD~~~W 422 (836)
-+..+++|++-+....=-|+...+....|+. .|.- +.|...--=|.+.-| ...+.-|-++|.|+..|
T Consensus 11 l~~~~~~~lre~~ek~kgW~~~~~~~~vev~-----~kk~-------~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~W 78 (205)
T cd08907 11 LEDNVQCLLREASERFKGWHSAPGPDNTELA-----CKKV-------GDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLW 78 (205)
T ss_pred HHHHHHHHHHHhhhccCCceeecCCCCcEEE-----EEeC-------CCCCceEEEEEEEEecCCCHHHHHHHhhchhhh
Confidence 3478889999998777789874322102221 1110 111111111222222 23456678999999999
Q ss_pred hhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeec-eecCceEEEEEEecCCccCCCCCC
Q 003251 423 AEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK-QHAEGVWAVVDVSIDTIRETSGAP 501 (836)
Q Consensus 423 ~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyck-q~~~g~waVvDvSld~~~~~~~~~ 501 (836)
=+. +-+.++|+.|..-. ++-|=-+..| +.+|.|||.+||.-+ .+..|.-+|+.+|++....-+ ..
T Consensus 79 D~~----m~e~~~Ie~Ld~n~--------dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp-~~ 144 (205)
T cd08907 79 DED----LLHSQVIEALENNT--------EVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQL-EA 144 (205)
T ss_pred hHH----HHhhhhheeecCCC--------EEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCC-CC
Confidence 987 34588988886211 2333333333 568999999999864 467789999999998654332 12
Q ss_pred CccceeecCCcceEeecCCCccEEEEEEeeeeccc
Q 003251 502 AFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES 536 (836)
Q Consensus 502 ~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~ 536 (836)
-+|+--+=|||||++++.|.|+||-|-|++..-+
T Consensus 145 -gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 145 -GVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred -CeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 3899999999999999999999999999987544
No 51
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.63 E-value=2.7e-05 Score=82.12 Aligned_cols=59 Identities=27% Similarity=0.509 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 135 KKRYHRHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~---~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
||+|..|+..-.+.|..+|. .+|||+...+++||++++++..||-.||.|+|-+.||..
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~~ 250 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKNM 250 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhhh
Confidence 55666899999999999994 589999999999999999999999999999999998644
No 52
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.62 E-value=0.0017 Score=67.51 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=116.6
Q ss_pred eeeeceeEE-EechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeE
Q 003251 397 EASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 472 (836)
Q Consensus 397 EAsR~~g~V-~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~f 472 (836)
-.=|..+++ .+.+..|.+.|+|.+ +|-.. +...++|..... .| ..++|-.+..|-|+ -.||+.+
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~-------~~~~~~le~~~~---~~-~~i~y~~~~~P~P~-s~RD~V~ 117 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET-------VIEHETLEEDEK---SG-TEIVRWVKKFPFPL-SDREYVI 117 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh-------eeeEEEEEecCC---CC-cEEEEEEEECCCcC-CCceEEE
Confidence 456777877 569999999999965 56665 344445543110 02 47899999999988 8999999
Q ss_pred EeeeceecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeec--CCCccEEEEEEeeeeccccccccchhhhccch
Q 003251 473 LRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDM--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGM 550 (836)
Q Consensus 473 lRyckq~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~--~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~ 550 (836)
.|-..+..+|..+|+=.|++.-. .|.. .++|.+..=||++|++. .+|.++|+++-|.+- .-.+|. -|++...
T Consensus 118 ~r~~~~~~~~~~~i~~~sv~~~~-~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~~ 191 (209)
T cd08870 118 ARRLWESDDRSYVCVTKGVPYPS-VPRS-GRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLAV 191 (209)
T ss_pred EEEEEEcCCCEEEEEEeCCcCCC-CCCC-CcEEEEEEEeEEEEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHHH
Confidence 99777777899988888877521 1211 47999999999999999 789999999999863 224554 4688889
Q ss_pred hHHHHHHHHHHHHHHHH
Q 003251 551 GFGAQRWVATLQRQCEC 567 (836)
Q Consensus 551 afGA~rWlatLqRqcer 567 (836)
..|+-.||..|.+.|..
T Consensus 192 ~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 192 KRGMPGFLKKLENALRK 208 (209)
T ss_pred HhhhHHHHHHHHHHHhc
Confidence 99999999999988853
No 53
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.54 E-value=0.003 Score=67.29 Aligned_cols=195 Identities=13% Similarity=0.178 Sum_probs=124.0
Q ss_pred HHHHHHHHHhhcC--CCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEE-echhhHHHHhcChhh
Q 003251 345 LAAMDELVKMAQT--DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVETLMDPNR 421 (836)
Q Consensus 345 ~~Am~El~~la~~--~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~-~~~~~LVe~lmD~~~ 421 (836)
.+-.+|.+++|+. ++.-|--..+.+. .+.|.+.. ...|+....=|+.++|. ..+..+.+.|.|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~W~l~~~~~g---------ikVy~r~~--~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~ 77 (235)
T cd08872 9 DEKVQEQLTYALEDVGADGWQLFAEEGE---------MKVYRREV--EEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV 77 (235)
T ss_pred HHHHHHHHHHHHccCCCCCCEEEEeCCc---------eEEEEEEC--CCCCceeeeEEEEEEECCCCHHHHHHHHhChhh
Confidence 3566789999865 5557976543321 23333321 11244445678888888 889999999999874
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecC-------ceEEEEEEecCCc
Q 003251 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE-------GVWAVVDVSIDTI 494 (836)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~-------g~waVvDvSld~~ 494 (836)
..+=... +...+||..-. ....+.|..+-.|=| +-.|||.|+|+-++.++ +.|+|+..|++.-
T Consensus 78 r~~Wd~~----~~~~~vie~l~-----~~~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~ 147 (235)
T cd08872 78 RMDWETT----LENFHVVETLS-----QDTLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHD 147 (235)
T ss_pred HHHHHhh----hheeEEEEecC-----CCCEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccCc
Confidence 4333222 34444554332 222567888888999 69999999999998876 7899999997743
Q ss_pred cCCCCCCCccceee---cCCcceEee------c--CCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHH
Q 003251 495 RETSGAPAFVNCRR---LPSGCVVQD------M--PNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQR 563 (836)
Q Consensus 495 ~~~~~~~~~~~~~r---~PSGclIq~------~--~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqR 563 (836)
. .|..+.++|++. +=.|.+|.+ + .||.|+||++-|++---+.-.- +++.....++-++|..|--
T Consensus 148 ~-~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~iP~w----vvn~~~k~~~P~~l~~~~~ 222 (235)
T cd08872 148 S-APLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWAPAS----VLRAVYKREYPKFLKRFTS 222 (235)
T ss_pred c-CCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCccHH----HHHHHHHhhchHHHHHHHH
Confidence 2 122224777765 223333332 1 5889999999999755443333 3555556667777777754
Q ss_pred HH
Q 003251 564 QC 565 (836)
Q Consensus 564 qc 565 (836)
++
T Consensus 223 ~~ 224 (235)
T cd08872 223 YV 224 (235)
T ss_pred HH
Confidence 43
No 54
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.52 E-value=2.3e-05 Score=61.31 Aligned_cols=34 Identities=32% Similarity=0.630 Sum_probs=29.0
Q ss_pred cCCCCCHHHHHHHHHhhcccceeeeeccchhhhH
Q 003251 155 ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (836)
Q Consensus 155 ~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK 188 (836)
.+|||+..++.+||+++||+.+||..||-|.|.+
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4799999999999999999999999999999864
No 55
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.46 E-value=0.0022 Score=66.65 Aligned_cols=152 Identities=11% Similarity=0.123 Sum_probs=111.5
Q ss_pred eeeceeEE-EechhhHHHHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEE
Q 003251 398 ASRETGMV-IINSLALVETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFL 473 (836)
Q Consensus 398 AsR~~g~V-~~~~~~LVe~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~fl 473 (836)
.=|..+++ ...+..+++.|+|.+ +|-.. +...++|.-... -...++|..+..|-|+ -.||+.+.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~-------~~~~~~le~~~~----~~~~i~y~~~~~P~P~-s~RD~V~~ 113 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT-------AVELEVVDEDPE----TGSEIIYWEMQWPKPF-ANRDYVYV 113 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh-------heeEEEEEccCC----CCCEEEEEEEECCCCC-CCccEEEE
Confidence 46665644 789999999999986 56665 444566654211 1237899999999996 89999999
Q ss_pred eeeceec-CceEEEEEEecCCccCCCCCCCccceeecCCcceEeecC---CCccEEEEEEeeeeccc-cccccchhhhcc
Q 003251 474 RFCKQHA-EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP---NGYSKVTWVEHAEYDES-QVHQLYKPLIIS 548 (836)
Q Consensus 474 Ryckq~~-~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~---nG~skVtwVeH~e~d~~-~v~~lyrpl~~S 548 (836)
|-..+.+ +|.++|+-.|++.-. .|....++|.....+|++|++.. ++.|+|+++-|. |+. .+|.- |++.
T Consensus 114 r~~~~~~~~~~~~i~~~sv~hp~-~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~~---lvN~ 187 (207)
T cd08911 114 RRYIIDEENKLIVIVSKAVQHPS-YPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPSY---ITSW 187 (207)
T ss_pred EEEEEcCCCCEEEEEEecCCCCC-CCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCHH---HHHH
Confidence 8876665 567888888887421 12122589999999999999984 678999988885 666 36653 4666
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 003251 549 GMGFGAQRWVATLQRQCEC 567 (836)
Q Consensus 549 g~afGA~rWlatLqRqcer 567 (836)
-...++-.||..|++-|..
T Consensus 188 ~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 188 VAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHhhccHHHHHHHHHHhc
Confidence 6777888999999887753
No 56
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.43 E-value=0.00011 Score=76.28 Aligned_cols=64 Identities=30% Similarity=0.610 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
..+.++.|+.++..|+..++..|...++|+...+.+|+..++++++.|++||||+|++.|+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 150 NKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 4556778889999999999999999999999999999999999999999999999999997654
No 57
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.38 E-value=0.00011 Score=84.88 Aligned_cols=61 Identities=28% Similarity=0.307 Sum_probs=55.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (836)
+..+.||.|.+||..|...|..+|+++++|+....+.|+.+|+|...-|..||-|-|.|.+
T Consensus 416 ~~~~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 416 KMLQTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRSL 476 (558)
T ss_pred ccccCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhcc
Confidence 3445677899999999999999999999999999999999999999999999999888753
No 58
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.13 E-value=0.023 Score=59.40 Aligned_cols=175 Identities=19% Similarity=0.303 Sum_probs=102.2
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhhcCCCCcceEeec
Q 003251 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 689 (836)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 689 (836)
..++|... .. .++|+|.+|+..+ +.+...++...++ +||+.+|++|.|...|.+||..... .+.+.++
T Consensus 21 ~~~~W~~~-~~--~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~ 89 (222)
T cd08871 21 STDGWKLK-YN--KNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL 89 (222)
T ss_pred CCCCcEEE-Ec--CCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc
Confidence 34689976 33 5679999988632 2344455666666 9999999999999999999974432 2334444
Q ss_pred ccCCCCCceEEEEEeccCC-CCCCceEEEEccccCCCCcEEEEe-ecchhhhhhhhcCCCCCCc--cccCCCcEEcCCCC
Q 003251 690 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDGP 765 (836)
Q Consensus 690 a~g~~~gn~vsllr~~~~~-~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~ds~~v--~LLPSGF~I~Pdg~ 765 (836)
+.++.|.-...+..- -...+.++++..+.+. ++++|++ .|+-+.+ ...+.+| ..+.+||.|-|.+.
T Consensus 90 ----d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~~ 159 (222)
T cd08871 90 ----NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTGP 159 (222)
T ss_pred ----CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECCC
Confidence 344555545444222 3456777777655444 7766543 3432221 0111222 25667777777331
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 003251 766 DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 833 (836)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~AL~ 833 (836)
++|.+|.-+|+=.... +..--|.. +....-.++++++.|+.
T Consensus 160 -----------------------~~t~vt~~~~~Dp~G~----IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 160 -----------------------KGCTLTYVTQNDPKGS----LPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred -----------------------CCEEEEEEEecCCCCC----cCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3588887776654432 22222222 23334467888887764
No 59
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.07 E-value=0.0056 Score=65.30 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=84.6
Q ss_pred eEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCc
Q 003251 403 GMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (836)
Q Consensus 403 g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g 482 (836)
++|...+.+|++.|.|.+...+=.+ .+...++|..-. ....++|..+..|. -+..|||.++|+-++..++
T Consensus 83 ~~vd~s~~~v~dlL~D~~~R~~WD~----~~~e~evI~~id-----~d~~iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 83 LKVQTCASDAFDLLSDPFKRPEWDP----HGRSCEEVKRVG-----EDDGIYHTTMPSLT-SEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred EEecCCHHHHHHHHhCcchhhhhhh----cccEEEEEEEeC-----CCcEEEEEEcCCCC-CCCCceEEEEEEEEeccCC
Confidence 3488899999999999875443322 255566665321 13356776655555 4789999999999984433
Q ss_pred --eEEEEEEecC-CccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeee
Q 003251 483 --VWAVVDVSID-TIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAE 532 (836)
Q Consensus 483 --~waVvDvSld-~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e 532 (836)
.++|.=.|+. ... |..+.++|.+.+=.|++|++..+|.|+||.+-|++
T Consensus 153 ~~~~~I~~~SV~h~~~--Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 153 GDPYKVAFRSVTLPRV--PQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CCeEEEEEeeeecccC--CCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 3777766655 221 11225899999999999999999999999999986
No 60
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.59 E-value=0.15 Score=53.48 Aligned_cols=174 Identities=19% Similarity=0.281 Sum_probs=107.2
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhh-hcCCCCcceEe
Q 003251 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDI-LSNGGPMQEMA 687 (836)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~-ls~G~~vqe~~ 687 (836)
....+|... ...++|.|.++|..+ |.|.-++.| |+=++ +|.+.|+|.|+| |..||. |.... .|.
T Consensus 24 ek~kgW~~~---~~~~~vev~~kk~~d--~~~l~lwk~---s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~---~Ie 89 (205)
T cd08907 24 ERFKGWHSA---PGPDNTELACKKVGD--GHPLRLWKV---STEVEAPPSVVLQRVLRE---RHLWDEDLLHSQ---VIE 89 (205)
T ss_pred hccCCceee---cCCCCcEEEEEeCCC--CCceEEEEE---EEEecCCCHHHHHHHhhc---hhhhhHHHHhhh---hhe
Confidence 455789876 236789999999754 566555544 45568 999999999999 999996 33322 222
Q ss_pred ecccCCCCCceEEEEEeccCCCCCCceEEEEccc-cC-CCCcEEEEee-cchhhhhhhhcCCCCCCccccCCCcEEcCCC
Q 003251 688 HIAKGQDHGNCVSLLRASAINANQSSMLILQETC-TD-AAGSLVVYAP-VDIPAMHVVMNGGDSAYVALLPSGFAIVPDG 764 (836)
Q Consensus 688 ~ia~g~~~gn~vsllr~~~~~~~~~~~liLQes~-td-~sgs~vVyAP-vD~~~m~~vm~G~ds~~v~LLPSGF~I~Pdg 764 (836)
.| +..|.|-=.-.+...+-.+--|++|-++ +| ..|++++.+- |+=+... ..|| --...|=+||-|=|.|
T Consensus 90 ~L----d~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~p--p~~g--VRa~~l~sgYlIep~g 161 (205)
T cd08907 90 AL----ENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQ--LEAG--VRAVLLTSQYLIEPCG 161 (205)
T ss_pred ee----cCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCC--CCCC--eEEEEEeccEEEEECC
Confidence 33 4445554444544444555667777777 34 5677666542 2222111 1222 1223455777776643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhH-hhhhhHHHHHHHHHhc
Q 003251 765 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNLISCTVQKIKAALQ 833 (836)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv-~~li~~tv~~Ik~AL~ 833 (836)
. |+|-||==.|+=.... .++=+..| ..|++.-+.||+..+.
T Consensus 162 ~-----------------------g~s~ltyi~rvD~rG~-----~P~Wynk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 162 M-----------------------GRSRLTHICRADLRGR-----SPDWYNKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred C-----------------------CCeEEEEEEEeCCCCC-----CcHHHHHhHHHHHHHHHHHHHhhcc
Confidence 2 5788887777666555 44555555 5667778889988764
No 61
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.54 E-value=0.12 Score=53.34 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=103.7
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcCCCCcceEeecc
Q 003251 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIA 690 (836)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia 690 (836)
..++|... . ..++|+|.+|+..+ +.| +..-+...-++.+|+.||+.|.| .|.+||...- ..+.+-.|
T Consensus 17 ~~~~W~~~-~--~~~gi~I~~k~~~~--~~~---l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~--~~~vie~i- 83 (197)
T cd08869 17 KSKGWVSV-S--SSDHVELAFKKVDD--GHP---LRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLL--QWKVVETL- 83 (197)
T ss_pred ccCCceEE-e--cCCcEEEEEEeCCC--CCc---EEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhh--eEEEEEEe-
Confidence 46899965 3 35799999999733 222 44557788889999999999988 6899996432 12333333
Q ss_pred cCCCCCceEEEEEeccCCC-CCCceEEEEccccC-CCCcEEEEe-ecchh-hhhhhhcCCCCCC--ccccCCCcEEcCCC
Q 003251 691 KGQDHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVVYA-PVDIP-AMHVVMNGGDSAY--VALLPSGFAIVPDG 764 (836)
Q Consensus 691 ~g~~~gn~vsllr~~~~~~-~~~~~liLQes~td-~sgs~vVyA-PvD~~-~m~~vm~G~ds~~--v~LLPSGF~I~Pdg 764 (836)
+..+.|--...+..-+ ...++.+++-...| ..|+++|.. -|+-+ .+ -+.+ +..+++||.|-|.+
T Consensus 84 ---d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-------p~g~VR~~~~~~g~~i~p~~ 153 (197)
T cd08869 84 ---DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-------PLGGVRAVVLASRYLIEPCG 153 (197)
T ss_pred ---cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-------CCCCEEEEEEeeeEEEEECC
Confidence 2334433333333222 33466666532333 455665433 23221 11 0123 35788999998843
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhHhhhhhHHHHHHHHHhcc
Q 003251 765 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQC 834 (836)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv~~li~~tv~~Ik~AL~~ 834 (836)
. ++|.+|--.|+=.. ..+..=-+-..+++++..|++|++.+.|
T Consensus 154 ~-----------------------~~t~vty~~~~Dp~----G~iP~wl~N~~~~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 154 S-----------------------GKSRVTHICRVDLR----GRSPEWYNKVYGHLCARELLRIRDSFRQ 196 (197)
T ss_pred C-----------------------CCeEEEEEEEECCC----CCCCceeecchHhHHHHHHHHHHhhccC
Confidence 2 35777766665433 2233223455678999999999998876
No 62
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.45 E-value=0.037 Score=59.30 Aligned_cols=129 Identities=12% Similarity=0.116 Sum_probs=84.0
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccc-ccccccceeeEEeeece
Q 003251 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQ 478 (836)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~-SPLvp~Re~~flRyckq 478 (836)
|.-++|...+.+|.+.|.|.+...+=.+. +...+||..... + . . +|-..-.+ ..-|..|||..++...+
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~----~~e~~vIe~id~---~-~-~-vY~v~~~p~~~pvs~RDfV~~~s~~~ 153 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKH----YRSCELVQQVDE---D-D-A-IYHVTSPSLSGHGKPQDFVILASRRK 153 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhh----ccEEEEEEecCC---C-c-E-EEEEecCCCCCCCCCCeEEEEEEEEe
Confidence 33468899999999999998755444333 444555543322 1 1 1 23322111 12588999999988866
Q ss_pred ec-Cc-eEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 003251 479 HA-EG-VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (836)
Q Consensus 479 ~~-~g-~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 541 (836)
.+ +| .++|+=.|+..-. -|..+.++|.+.+..|++|++..+|.|+||++-|++ +..+|..
T Consensus 154 ~~~~g~~yii~~~sv~~P~-~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 154 PCDNGDPYVIALRSVTLPT-HPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYI 215 (240)
T ss_pred ccCCCccEEEEEEEeecCC-CCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHH
Confidence 54 34 4656555544221 222235899999999999999999999999999988 2345543
No 63
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.39 E-value=0.029 Score=59.94 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=89.5
Q ss_pred eeeceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccc-cccccceeeEEeee
Q 003251 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLS-PLVPVREVNFLRFC 476 (836)
Q Consensus 398 AsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~S-PLvp~Re~~flRyc 476 (836)
+-|.-..|...+.+|++.|.|.+...+=.+- +...+||..-...+ . +|...-.|- |+ ..|||.++|--
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~----~~e~~vI~qld~~~-----~-vY~~~~pPw~Pv-k~RD~V~~~s~ 147 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH----FLSCEVIDWVSEDD-----Q-IYHITCPIVNND-KPKDLVVLVSR 147 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHh----hceEEEEEEeCCCc-----C-EEEEecCCCCCC-CCceEEEEEEE
Confidence 3444457889999999999998754443332 45555554322211 1 465554443 44 89999998776
Q ss_pred ceec-Cce-EEEEEEecCC-ccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 003251 477 KQHA-EGV-WAVVDVSIDT-IRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (836)
Q Consensus 477 kq~~-~g~-waVvDvSld~-~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 541 (836)
.+.. +|. ++|.=.|+.. ..+ ..+.++|.+.+=+|++|++.++|.|+||.+-|++ +..+|..
T Consensus 148 ~~~~~dg~~~~I~~~SVp~~~~P--p~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~ 211 (236)
T cd08914 148 RKPLKDGNTYVVAVKSVILPSVP--PSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYF 211 (236)
T ss_pred EecCCCCCEEEEEEeecccccCC--CCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--Cccchhe
Confidence 6665 885 8888888765 322 1225899999999999999999999999999995 4556544
No 64
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.32 E-value=0.0065 Score=76.31 Aligned_cols=62 Identities=19% Similarity=0.338 Sum_probs=57.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
.++++|++++..|+..+..+|....||...+.+.|...++++++.|++||||-|+|.||...
T Consensus 902 ~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 902 GRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 35677899999999999999999999999999999999999999999999999999997654
No 65
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=96.17 E-value=0.23 Score=52.11 Aligned_cols=174 Identities=18% Similarity=0.259 Sum_probs=107.4
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcCCCCcceEeeccc
Q 003251 612 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAK 691 (836)
Q Consensus 612 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~ 691 (836)
.++|... . ..+++.|.++++.+..|. -.++.--+|.+|+.||+||.|..+|.+||-.... .+.+-+|
T Consensus 21 ~~gWk~~-k--~~~~~~v~~k~~~~~~gk------l~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~--~~iie~I-- 87 (204)
T cd08904 21 TSGWKVV-K--TSKKITVSWKPSRKYHGN------LYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV--YKMLQRI-- 87 (204)
T ss_pred ccCCeEE-e--cCCceEEEEEEcCCCCce------EEEEEEEecCCHHHHHHHHhccchhhhhcccccc--eeeEEEe--
Confidence 4899977 3 348999999988655542 2456677899999999999999999999974332 3444444
Q ss_pred CCCCCceEEEEEeccC--C-CCCCceEEEEcccc-CCCCcEEE-EeecchhhhhhhhcCCCCCCc--cccCCCcEEcCCC
Q 003251 692 GQDHGNCVSLLRASAI--N-ANQSSMLILQETCT-DAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 764 (836)
Q Consensus 692 g~~~gn~vsllr~~~~--~-~~~~~~liLQes~t-d~sgs~vV-yAPvD~~~m~~vm~G~ds~~v--~LLPSGF~I~Pdg 764 (836)
+...+|...+..+. + -+..+.+.+|-..- +- +.+++ +.-|+-+.+ ..-+.+| -..|+||.|.|..
T Consensus 88 --d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~-~~~ii~~~sv~Hp~~-----Pp~~g~VRa~n~~~G~~i~pl~ 159 (204)
T cd08904 88 --DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEG-NMNIVSSVSVEYPQC-----PPSSNYIRGYNHPCGYVCSPLP 159 (204)
T ss_pred --CCCcEEEEEecccccCCcccCceEEEEEEEEEeCC-CEEEEEEEecccCCC-----CCCCCcEEEeeeccEEEEEECC
Confidence 66667777665421 1 23467777764222 33 33433 444554443 1123444 3789999999943
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh--HhhhhhHHHHHHHHHh
Q 003251 765 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAAL 832 (836)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tv~~Ik~AL 832 (836)
.. .++|.||.-+|+=.. -.|..--|.. -.+++ ..+...|.||
T Consensus 160 ~~---------------------p~~t~l~~~~~~Dlk----G~lP~~vv~~~~~~~~~-~f~~~~~~~~ 203 (204)
T cd08904 160 EN---------------------PAYSKLVMFVQPELR----GNLSRSVIEKTMPTNLV-NLILDAKDGI 203 (204)
T ss_pred CC---------------------CCceEEEEEEEeCCC----CCCCHHHHHHHhHHHHH-HHHHHHHHhc
Confidence 22 146899998885443 3344433433 23333 3666777776
No 66
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.62 E-value=0.15 Score=53.36 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=73.0
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcCCCCcceEeec
Q 003251 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 689 (836)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 689 (836)
-...+|..- . ..++|+|.++.. +|...| +++ .+. +++||+.|+++|+|...|.+||...... +|
T Consensus 19 ~~~~gW~l~-~--~~~gI~Vy~k~~---~~~~~~-~~g-e~~--v~as~~~v~~ll~D~~~r~~Wd~~~~~~------~v 82 (205)
T cd08874 19 QATAGWSYQ-C--LEKDVVIYYKVF---NGTYHG-FLG-AGV--IKAPLATVWKAVKDPRTRFLYDTMIKTA------RI 82 (205)
T ss_pred hccCCcEEE-e--cCCCEEEEEecC---CCCcce-EEE-EEE--EcCCHHHHHHHHhCcchhhhhHHhhhhe------ee
Confidence 456799533 2 368999999874 234444 443 333 4999999999999999999999854321 22
Q ss_pred ccCCCCCceEEEEEeccCCC-----CCCceEEEEccccCCCCcEEE-EeecchhhhhhhhcCCCC-C--CccccCCCcEE
Q 003251 690 AKGQDHGNCVSLLRASAINA-----NQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDS-A--YVALLPSGFAI 760 (836)
Q Consensus 690 a~g~~~gn~vsllr~~~~~~-----~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~ds-~--~v~LLPSGF~I 760 (836)
.+-.+.. ..|++.....+ ..+++.+|+ ++.+.-+.++| ---|+-+.+ ...+ . -+..+++||.|
T Consensus 83 l~~~~~d--~~i~y~~~~~Pwp~~~~~RDfV~l~-~~~~~~~~~vi~~~SV~~~~~-----P~~~~~~VR~~~~~~gw~i 154 (205)
T cd08874 83 HKTFTED--ICLVYLVHETPLCLLKQPRDFCCLQ-VEAKEGELSVVACQSVYDKSM-----PEPGRSLVRGEILPSAWIL 154 (205)
T ss_pred eeecCCC--eEEEEEEecCCCCCCCCCCeEEEEE-EEEECCCcEEEEEEecccccC-----CCCCCCeEEeeeEeeeEEE
Confidence 2222332 34555431111 456787777 45444444333 211222110 0001 1 24578888888
Q ss_pred cCC
Q 003251 761 VPD 763 (836)
Q Consensus 761 ~Pd 763 (836)
.|.
T Consensus 155 ~P~ 157 (205)
T cd08874 155 EPV 157 (205)
T ss_pred EEC
Confidence 883
No 67
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.90 E-value=1.8 Score=43.97 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=45.8
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh
Q 003251 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL 677 (836)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l 677 (836)
|.+-+|... . ..++|+|.+++..+ +.+..-.++..++.||+.||+++.|..+|.+||--
T Consensus 14 ~~~~~W~~~-~--~~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~ 72 (195)
T cd08876 14 APDGDWQLV-K--DKDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPN 72 (195)
T ss_pred CCCCCCEEE-e--cCCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhh
Confidence 444559977 3 35799999998632 12445577778999999999999999999999973
No 68
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.86 E-value=1.4 Score=45.85 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=80.6
Q ss_pred HHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhc
Q 003251 599 MTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 678 (836)
Q Consensus 599 M~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 678 (836)
++..|...+.. .++|... . ..++|+|.+|...+ +.+++.+.-..++.|+..++++|+|-..+.+|+-.+
T Consensus 10 ~~~~~~~~l~~--~~~W~~~-~--~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQ-K--ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHhcccC--CCCcEEe-c--cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 34556666655 6789977 3 35799999999733 348899999999999999999999999999999753
Q ss_pred CCCCcceEeecccCCCCCceEEEEEeccCC-CCCCceEEEEcccc--CCCCcEEEEe
Q 003251 679 NGGPMQEMAHIAKGQDHGNCVSLLRASAIN-ANQSSMLILQETCT--DAAGSLVVYA 732 (836)
Q Consensus 679 ~G~~vqe~~~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQes~t--d~sgs~vVyA 732 (836)
. ..+.+..+ +..+.|..+++...= -+..++++....|. |..|+++|+.
T Consensus 79 ~--~~~~l~~~----~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 79 I--RSKKVKQL----GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred e--eeEEEeec----CCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 2 12233333 445678888766321 23456666544443 3677777655
No 69
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.58 E-value=1.7 Score=42.98 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=90.2
Q ss_pred CCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcCCCCcceEeecccC
Q 003251 613 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 692 (836)
Q Consensus 613 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g 692 (836)
++|..+ .. .++|+|..++..+ . .+...++..-++.|+..|+++|.|...|.+||...... ..+..+.
T Consensus 15 ~~W~~~-~~--~~~v~vy~~~~~~-~-----~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~--~vl~~~~-- 81 (193)
T cd00177 15 EGWKLV-KE--KDGVKIYTKPYED-S-----GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEF--EVIEEID-- 81 (193)
T ss_pred CCeEEE-EE--CCcEEEEEecCCC-C-----CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEE--EEEEEeC--
Confidence 589987 32 4589998887633 1 13455667778999999999999999999999633222 2333332
Q ss_pred CCCCceEEEEEeccCC-CCCCceEEEEccccCCCC-cEEEEeecchhhhhhhhcCCCCCCc--cccCCCcEEcCCCCCCC
Q 003251 693 QDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAG-SLVVYAPVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDGPDSR 768 (836)
Q Consensus 693 ~~~gn~vsllr~~~~~-~~~~~~liLQes~td~sg-s~vVyAPvD~~~m~~vm~G~ds~~v--~LLPSGF~I~Pdg~~~~ 768 (836)
.+..|.-......- ....+++++.....+..+ -+++...||.+.. ..-+.+| .++++||.|-|.+
T Consensus 82 --~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~~---- 150 (193)
T cd00177 82 --EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPLD---- 150 (193)
T ss_pred --CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEECC----
Confidence 22444444443322 345678888765445534 5666667776521 1112333 3668888888741
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeeEEEeeeeccc
Q 003251 769 GPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 802 (836)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~ 802 (836)
.++|.+|.-+|+=..
T Consensus 151 -------------------~~~~~vt~~~~~D~~ 165 (193)
T cd00177 151 -------------------PGKTKVTYVLQVDPK 165 (193)
T ss_pred -------------------CCCEEEEEEEeeCCC
Confidence 146888887777544
No 70
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=94.51 E-value=1.8 Score=44.84 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=74.9
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhh-hccccchhhhhhcCCCCcceEeecc
Q 003251 612 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDERLRSEWDILSNGGPMQEMAHIA 690 (836)
Q Consensus 612 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FL-rde~~R~eWd~ls~G~~vqe~~~ia 690 (836)
..+|... .. ..++|.|.+|+.. | .|-+ .++...+++||..||++| .|...|.+||..+.. .+.+-.+
T Consensus 23 ~~~W~l~-~~-~~~~i~i~~r~~~---~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~- 90 (208)
T cd08868 23 DPGWKLE-KN-TTWGDVVYSRNVP---G--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI- 90 (208)
T ss_pred CCCceEE-Ee-cCCCCEEEEEEcC---C--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe-
Confidence 4489976 32 2238999999863 3 2333 445556799999999865 588999999975432 3344444
Q ss_pred cCCCCCceEEEEEeccC--C-CCCCceEEEEccccCCCCcEEE-EeecchhhhhhhhcCCCCCC--ccccCCCcEEcCCC
Q 003251 691 KGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDG 764 (836)
Q Consensus 691 ~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~ds~~--v~LLPSGF~I~Pdg 764 (836)
+....|--...... . -+.++++.++- +....+.++| ...|+-+.+ ...+.+ +..+++||.|-|.+
T Consensus 91 ---d~~~~i~y~~~~~~~~~~vs~RDfV~~r~-~~~~~~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~~ 161 (208)
T cd08868 91 ---DDNTDISYQVAAEAGGGLVSPRDFVSLRH-WGIRENCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPLP 161 (208)
T ss_pred ---cCCcEEEEEEecCcCCCcccccceEEEEE-EEecCCeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEECC
Confidence 23334433222221 1 23456766665 3332355544 333443321 112333 45788999998854
No 71
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=94.35 E-value=1.5 Score=45.70 Aligned_cols=106 Identities=16% Similarity=0.267 Sum_probs=63.5
Q ss_pred CCceeccCCCCCCc----EEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhhcCCCCcceEe
Q 003251 613 HKWNKLNAGNVDED----VRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMA 687 (836)
Q Consensus 613 ~~W~~l~~~~~~~d----Vrv~~r~~~~~~g~p~G~VL~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~ 687 (836)
++|... .. .++ |+|-.|+.. |. | +.--++...++ +||+.|+++|.|...|.+||... .|.-
T Consensus 22 ~~W~~~-~~--k~~~~~~i~vy~r~~~---~s--~-~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~ 87 (209)
T cd08870 22 QAWQQV-MD--KSTPDMSYQAWRRKPK---GT--G-LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEHE 87 (209)
T ss_pred CcceEh-hh--ccCCCceEEEEecccC---CC--C-ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeEE
Confidence 689987 43 344 888777652 22 2 33456667786 89999999999999999999743 3333
Q ss_pred ecccCCCCCceEEEEEeccCC-CCCCceEEEEccccCCCCcEEEEe
Q 003251 688 HIAKGQDHGNCVSLLRASAIN-ANQSSMLILQETCTDAAGSLVVYA 732 (836)
Q Consensus 688 ~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQes~td~sgs~vVyA 732 (836)
-|....+.++.|-=......= -+..+..+....+.|.-+.++|..
T Consensus 88 ~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 88 TLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred EEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 333322224444333333211 234566665555566566666554
No 72
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.25 E-value=2.3 Score=43.34 Aligned_cols=135 Identities=20% Similarity=0.232 Sum_probs=81.1
Q ss_pred CCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhH-HHHhhhccccchhhhhhcCCCCcceEeecc
Q 003251 612 VHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQR-LFNFLRDERLRSEWDILSNGGPMQEMAHIA 690 (836)
Q Consensus 612 ~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~-vf~FLrde~~R~eWd~ls~G~~vqe~~~ia 690 (836)
.++|... .+ +.+++.+..|...+ +. .+-..+....++.+++. +.++|.|...|.+||..... ++.+-.+.
T Consensus 18 ~~~W~~~-~~-~~~~~~~~~~~~~~--~~---~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~ 88 (206)
T smart00234 18 EPGWVLS-SE-NENGDEVRSILSPG--RS---PGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID 88 (206)
T ss_pred CCccEEc-cc-cCCcceEEEEccCC--CC---ceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC
Confidence 4679976 43 23445454554321 11 36688889999988875 66899999999999975432 33344442
Q ss_pred cCCCCCceEEEEEeccC--CCCCCceEEEEccccCCCCcEEEEe-ecchhhhhhhhcCCCCCCc--cccCCCcEEcCCC
Q 003251 691 KGQDHGNCVSLLRASAI--NANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 764 (836)
Q Consensus 691 ~g~~~gn~vsllr~~~~--~~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~ds~~v--~LLPSGF~I~Pdg 764 (836)
.++.|-....+.. --...+.+++.....+..++++|.. -++-+.. ...+.+| .++++||.|-|.+
T Consensus 89 ----~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 89 ----NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred ----CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEECC
Confidence 2344444333322 1234677777765556777766654 5554432 1123344 5899999999944
No 73
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=94.25 E-value=0.033 Score=62.12 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=50.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 134 RKKRYHRHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~---~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
++|++..+.......|+.... ..+||+..++..|++++||+..||..||-|.|-|..+-..
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~ 302 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMI 302 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchH
Confidence 455566788999999987643 3589999999999999999999999999999988665443
No 74
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=94.24 E-value=4.7 Score=41.75 Aligned_cols=145 Identities=17% Similarity=0.220 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhc--ccc
Q 003251 593 LKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRD--ERL 670 (836)
Q Consensus 593 lkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrd--e~~ 670 (836)
=++.|.|..-|... ++|... . ..++|+|.+++..+.. + -..++..-+|.+|+.||++|.| +..
T Consensus 8 ~~~~~~~~~~~~~~------~~W~~~-~--~~~~i~v~~~~~~~~~----~--~~~k~~~~i~~~~~~v~~~l~d~~~~~ 72 (206)
T cd08867 8 EKLANEALQYINDT------DGWKVL-K--TVKNITVSWKPSTEFT----G--HLYRAEGIVDALPEKVIDVIIPPCGGL 72 (206)
T ss_pred HHHHHHHHHHhcCc------CCcEEE-E--cCCCcEEEEecCCCCC----C--EEEEEEEEEcCCHHHHHHHHHhcCccc
Confidence 34555565555422 789987 3 3478999998643221 2 2246667779999999999999 899
Q ss_pred chhhhhhcCCCCcceEeecccCCCCCceEEEEEeccC--C-CCCCceEEEEccccCCCCcEEEE-eecchhhhhhhhcCC
Q 003251 671 RSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGG 746 (836)
Q Consensus 671 R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm~G~ 746 (836)
|.+||.... ..+.+.+| +..+.|-.+..... . -+..+...+|-......|++++. .-|+-+.+ ..
T Consensus 73 r~~Wd~~~~--~~~~le~i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~ 141 (206)
T cd08867 73 RLKWDKSLK--HYEVLEKI----SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PP 141 (206)
T ss_pred ccccccccc--ceEEEEEe----CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CC
Confidence 999996432 34555555 33444433322111 1 23457777763222233556544 33333321 11
Q ss_pred CCCCc--cccCCCcEEcCC
Q 003251 747 DSAYV--ALLPSGFAIVPD 763 (836)
Q Consensus 747 ds~~v--~LLPSGF~I~Pd 763 (836)
-+.+| ..+++||.|-|.
T Consensus 142 ~~~~VR~~~~~~g~~i~p~ 160 (206)
T cd08867 142 TPGFVRGYNHPCGYFCSPL 160 (206)
T ss_pred CCCcEEEEeecCEEEEEEC
Confidence 23333 367888888874
No 75
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=94.19 E-value=3.2 Score=43.53 Aligned_cols=144 Identities=12% Similarity=0.120 Sum_probs=83.1
Q ss_pred HHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHH-hhhccccchhh
Q 003251 596 AQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN-FLRDERLRSEW 674 (836)
Q Consensus 596 aqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~-FLrde~~R~eW 674 (836)
++-=++.|..-+.. ..+|..- .. ..++|+|.+++.. +. | .+-+.-+-+++|++.||+ .|.|...|.+|
T Consensus 10 ~~~~~~~~~~~l~~--~~~W~l~-~~-~~~gi~V~s~~~~---~~--~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W 78 (209)
T cd08906 10 GKEALAVVEQILAQ--EENWKFE-KN-NDNGDTVYTLEVP---FH--G--KTFILKAFMQCPAELVYQEVILQPEKMVLW 78 (209)
T ss_pred HHHHHHHHHHHhhc--ccCCEEE-Ee-cCCCCEEEEeccC---CC--C--cEEEEEEEEcCCHHHHHHHHHhChhhcccc
Confidence 33333344433333 3589854 22 2478999997652 21 2 334677778999999985 78999999999
Q ss_pred hhhcCCCCcceEeecccCCCCCceEEEEEeccC---C-CCCCceEEEEccccCCCCcEEEEeecchhhhhhhhcCCCCCC
Q 003251 675 DILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAY 750 (836)
Q Consensus 675 d~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~---~-~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~ds~~ 750 (836)
|.-.. .++.+..| ++.+.|. ..+... + -+..++.+++-.+-+..+..++...|+-+.+ ...+.+
T Consensus 79 ~~~~~--~~~vi~~~----~~~~~i~-Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~~ 146 (209)
T cd08906 79 NKTVS--ACQVLQRV----DDNTLVS-YDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSKY 146 (209)
T ss_pred Cccch--hhhheeec----cCCcEEE-EEEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCCe
Confidence 96321 23344444 2333433 233221 1 2456788876544455554445555544432 223445
Q ss_pred c--cccCCCcEEcC
Q 003251 751 V--ALLPSGFAIVP 762 (836)
Q Consensus 751 v--~LLPSGF~I~P 762 (836)
| ...++||.|.|
T Consensus 147 VR~~~~~~G~~i~~ 160 (209)
T cd08906 147 VRGENGPGGFVVLK 160 (209)
T ss_pred EEEeeeccEEEEEE
Confidence 4 35899999998
No 76
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=93.79 E-value=2 Score=44.89 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=97.8
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhcc--ccchhhhhhcCCCCcceEee
Q 003251 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDE--RLRSEWDILSNGGPMQEMAH 688 (836)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde--~~R~eWd~ls~G~~vqe~~~ 688 (836)
..++|... . ..++|+|.+|++...+|. + .++-.-+|++++.||+||.|. ..|.+||..+.. ++.+-+
T Consensus 20 ~~~~W~~~-~--~~~~i~v~~~~~~~~~~~----~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~--~~vle~ 88 (208)
T cd08903 20 DESGWKTC-R--RTNEVAVSWRPSAEFAGN----L--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD--FEVVEA 88 (208)
T ss_pred cccCCEEE-E--cCCCEEEEeeecCCCCCc----E--EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc--EEEEEE
Confidence 56789977 4 347999999998655553 2 445556799999999999864 478999975432 333444
Q ss_pred cccCCCCCceEEEEEeccCC-----CCCCceEEEEccccCCCCcEEEEe-ecchhhhhhhhcCCCCCCcc--ccCCCcEE
Q 003251 689 IAKGQDHGNCVSLLRASAIN-----ANQSSMLILQETCTDAAGSLVVYA-PVDIPAMHVVMNGGDSAYVA--LLPSGFAI 760 (836)
Q Consensus 689 ia~g~~~gn~vsllr~~~~~-----~~~~~~liLQes~td~sgs~vVyA-PvD~~~m~~vm~G~ds~~v~--LLPSGF~I 760 (836)
| +....| ++..... -+..++++++-...+..|.+++.. -++-+.+ ...+.+|- .-|+|+.|
T Consensus 89 i----d~~~~i--~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~ 157 (208)
T cd08903 89 I----SDDVSV--CRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFC 157 (208)
T ss_pred e----cCCEEE--EEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEE
Confidence 4 233343 4432111 344677776643334556665544 2222121 11233442 44567776
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 003251 761 VPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 833 (836)
Q Consensus 761 ~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~AL~ 833 (836)
.|--. ..++|.+|.-+|+= |...|...-|.+ +...+-.|.+.++.+|.
T Consensus 158 ~~~~~---------------------~~~~t~v~~~~~~D----pkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 158 EPVPG---------------------EPDKTQLVSFFQTD----LSGYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EECCC---------------------CCCceEEEEEEEec----cCCCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 65110 01356666555543 444454444433 22344457777777764
No 77
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=93.36 E-value=2.2 Score=44.54 Aligned_cols=180 Identities=13% Similarity=0.159 Sum_probs=93.2
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeecc-ccChhHHHHhhhccccchhhhhhcCCCCcceEeec
Q 003251 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWL-PVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 689 (836)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wL-pv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 689 (836)
-..+|... . ..++|+|-.|...+ . |+. --++...+ .+|++.+|++|.|...|.+||... +|.--|
T Consensus 19 ~~~~W~l~-~--~~~~i~Vy~r~~~~---s--~~~-~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-----~~~~~l 84 (207)
T cd08911 19 EPDGWEPF-I--EKKDMLVWRREHPG---T--GLY-EYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-----VELEVV 84 (207)
T ss_pred cCCCcEEE-E--EcCceEEEEeccCC---C--CcE-EEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-----eeEEEE
Confidence 34569877 3 25679998887632 1 222 34554545 699999999999999999999743 333223
Q ss_pred ccCCCCCceEEEEEeccC-CCCCCceEEEEccccCCC-CcEEEEe-ecchhhhhhhhcCCCCC--CccccCCCcEEcCCC
Q 003251 690 AKGQDHGNCVSLLRASAI-NANQSSMLILQETCTDAA-GSLVVYA-PVDIPAMHVVMNGGDSA--YVALLPSGFAIVPDG 764 (836)
Q Consensus 690 a~g~~~gn~vsllr~~~~-~~~~~~~liLQes~td~s-gs~vVyA-PvD~~~m~~vm~G~ds~--~v~LLPSGF~I~Pdg 764 (836)
.+..+.++.|--.++... --...++.+-+-...|.. +.++|.. -|+-+.. ..-+. -|..+.+|+.|-|.+
T Consensus 85 e~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~-----P~~~g~VRv~~~~~~~~i~p~~ 159 (207)
T cd08911 85 DEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSY-----PESPKKVRVEDYWSYMVIRPHK 159 (207)
T ss_pred EccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCC-----CCCCCCEEEEEeEEEEEEEeCC
Confidence 222233444333333322 123345555543334543 3434432 1221110 00111 244567777777743
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 003251 765 PDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 833 (836)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~AL~ 833 (836)
.. ..+|+-++.-++ . .|...|..--|.. +...+-.++++++.|..
T Consensus 160 ~~--------------------~~~~~~~~~~~~--~--dPgG~IP~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 160 SF--------------------DEPGFEFVLTYF--D--NPGVNIPSYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred CC--------------------CCCCeEEEEEEE--e--CCCCccCHHHHHHHHHhhccHHHHHHHHHHh
Confidence 21 114666654333 2 4544443322211 33334458888888864
No 78
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=93.27 E-value=0.025 Score=47.52 Aligned_cols=43 Identities=28% Similarity=0.429 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhh
Q 003251 145 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (836)
Q Consensus 145 Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRa 187 (836)
.++.|+++|...+++.......|..+.+|+..||+.||--|+.
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~~ 51 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERMQ 51 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS-
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhcc
Confidence 4567999999999999999999999999999999999976543
No 79
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=93.08 E-value=4.3 Score=42.76 Aligned_cols=172 Identities=20% Similarity=0.299 Sum_probs=98.2
Q ss_pred CceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcCCCCcceEeecccCC
Q 003251 614 KWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQ 693 (836)
Q Consensus 614 ~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g~ 693 (836)
+|..+ ...+.+.+..+|. .+|.| +.--+.++=+|.+|..|...|-|+ |.+||...- .++.+..|
T Consensus 28 ~w~~~---~~~~~~el~~~k~--~~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~--e~~vIe~l---- 91 (204)
T cd08908 28 GWVSY---STSEQAELSYKKV--SEGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLL--DSKVIEIL---- 91 (204)
T ss_pred CCccc---CCCCcEEEEEecc--CCCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhh--heEeeEec----
Confidence 78776 2357799999986 34555 566778888898888888777775 999997331 12333333
Q ss_pred CCCceEEEEEeccCCC-CCCceEEEEccccC-CCCcEEEEee-cchhhhhhhhcCCCCCCccccCCCcEEcCCCCCCCCC
Q 003251 694 DHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVVYAP-VDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGP 770 (836)
Q Consensus 694 ~~gn~vsllr~~~~~~-~~~~~liLQes~td-~sgs~vVyAP-vD~~~m~~vm~G~ds~~v~LLPSGF~I~Pdg~~~~~~ 770 (836)
++.+.|-=..++..-+ ...++.+++-..+| .-|++++... |+-+.+- .++ =-+..+-+|+.|-|.|
T Consensus 92 d~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P--~~~---VR~~~~~~~w~i~P~g------ 160 (204)
T cd08908 92 DSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAP--VAG---VRVNVLLSRYLIEPCG------ 160 (204)
T ss_pred CCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCC--cCc---eEEEEEeeEEEEEECC------
Confidence 3333333333333222 23456666443333 4677777665 4433211 000 0122233344444421
Q ss_pred CCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhHhhhhhHHHHHHHHHhc
Q 003251 771 LANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 833 (836)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv~~li~~tv~~Ik~AL~ 833 (836)
+|+|.||--.|+= |...+..=-+-....|++.-+.||+..+.
T Consensus 161 -----------------~g~t~vtyi~~~D----PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 161 -----------------SGKSKLTYMCRID----LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred -----------------CCcEEEEEEEEeC----CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 2568887654443 44444555566678999999999998764
No 80
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=92.96 E-value=4.4 Score=42.70 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=95.5
Q ss_pred CCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhh-cCCCCcceEeeccc
Q 003251 613 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDIL-SNGGPMQEMAHIAK 691 (836)
Q Consensus 613 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~l-s~G~~vqe~~~ia~ 691 (836)
.+|..+ + ..+++.+..+|.. +|.|. =--++++=+|.+|..|+..+-+ .|.+||.- ..+. .+-+|
T Consensus 27 k~w~~~-~--~~~~~e~~ykK~~--d~~~l---k~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~---~ie~l-- 91 (205)
T cd08909 27 KGWISC-S--SSDNTELAYKKVG--DGNPL---RLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWK---VVETL-- 91 (205)
T ss_pred cCCccc-C--CcCCeEEEEecCC--CCCce---EEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeE---EEEEe--
Confidence 478776 2 3578889999864 34453 2345688889666666554444 59999962 2222 22222
Q ss_pred CCCCCceEEEEEeccCCCC-CCceEEEEccccC-CCCcEEE-EeecchhhhhhhhcCCCCCCccccCCCcEEcCCCCCCC
Q 003251 692 GQDHGNCVSLLRASAINAN-QSSMLILQETCTD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSR 768 (836)
Q Consensus 692 g~~~gn~vsllr~~~~~~~-~~~~liLQes~td-~sgs~vV-yAPvD~~~m~~vm~G~ds~~v~LLPSGF~I~Pdg~~~~ 768 (836)
+..+.|=-.+++...+- ..+..+++-..+| ..|++++ +..|+-+.-.. .|+= -+.++=+||.|-|.|.
T Consensus 92 --d~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~V--Ra~~~~~gylI~P~~~--- 162 (205)
T cd08909 92 --DKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGV--RAVVLDSQYLIEPCGS--- 162 (205)
T ss_pred --CCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcE--EEEEEcCcEEEEECCC---
Confidence 22244444444433222 3455565542334 5777644 33344332111 1211 3445668888888332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhHhhhhhHHHHHHHHHhc
Q 003251 769 GPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQ 833 (836)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv~~li~~tv~~Ik~AL~ 833 (836)
|+|.||---|+=.... +..=-+-.+..|++.-+.||+..+.
T Consensus 163 --------------------g~trvt~i~~vDpkG~----~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 163 --------------------GKSRLTHICRVDLKGH----SPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred --------------------CCEEEEEEEEecCCCC----ChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 3577765555443333 2222455578889999999998764
No 81
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=92.74 E-value=1.2 Score=47.84 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=47.0
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhc
Q 003251 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 678 (836)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 678 (836)
...++|..- . ..++|+|-++. +. -+++-+.-+-+++|++.||++|.|...|.+||...
T Consensus 53 a~~~~W~l~-~--dkdgIkVytr~-----~s---~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~ 110 (236)
T cd08914 53 AAKSGWEVT-S--TVEKIKIYTLE-----EH---DVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHF 110 (236)
T ss_pred cccCCCEEE-E--ccCCEEEEEec-----CC---CcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhh
Confidence 347899865 3 46899999984 22 15788888888999999999999999999999743
No 82
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=92.45 E-value=1.2 Score=47.86 Aligned_cols=66 Identities=23% Similarity=0.385 Sum_probs=48.4
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcCCCCcceEeec
Q 003251 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 689 (836)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 689 (836)
..++|..- . ..++|+|.++.+ ..+++-..=+-+++|++.||++|.|...|.+||. +...++.+..|
T Consensus 53 ~~~~W~l~-~--~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVA-S--STTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEE-E--cCCCEEEEEecC--------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 46799865 3 468999999973 1244445555589999999999999999999997 33344555555
No 83
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=91.76 E-value=4.5 Score=41.07 Aligned_cols=150 Identities=20% Similarity=0.321 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhh
Q 003251 595 LAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEW 674 (836)
Q Consensus 595 LaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eW 674 (836)
|+++....|.. ......++|... .+....++ .+++... +.. ..+...++..-++.++..+|..|.+... +|
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~-~~~~~~~~--~~~~~~~--~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~W 72 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLY-KDKKNGDV--YYKKVSP--SDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QW 72 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEE-EEETTTCE--EEEEEEC--SSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEe-EccCCCeE--EEEEeCc--ccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hc
Confidence 45555555653 335677799988 42222333 3444321 111 1355678888899888877777777444 99
Q ss_pred hhhcCCCCcceEeecccCCCCCceEEEEEeccCC---CCCCceEEEEccccCCCCcEEEE-eecchhhhhhhhcCCCCCC
Q 003251 675 DILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN---ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVVMNGGDSAY 750 (836)
Q Consensus 675 d~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~~---~~~~~~liLQes~td~sgs~vVy-APvD~~~m~~vm~G~ds~~ 750 (836)
|.... .++.+..| +++..|.....+..- -...+.++++-...+..|.++|. ..||.+..... .+.+
T Consensus 73 d~~~~--~~~~le~~----~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~ 142 (206)
T PF01852_consen 73 DKMCV--EAEVLEQI----DEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGY 142 (206)
T ss_dssp STTEE--EEEEEEEE----ETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTS
T ss_pred ccchh--hheeeeec----CCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCc
Confidence 98543 23344444 233555555544322 22356777765334566765554 57877764322 2344
Q ss_pred cc--ccCCCcEEcCC
Q 003251 751 VA--LLPSGFAIVPD 763 (836)
Q Consensus 751 v~--LLPSGF~I~Pd 763 (836)
|- +++|||.|-|.
T Consensus 143 VR~~~~~s~~~i~~~ 157 (206)
T PF01852_consen 143 VRAEILISGWVIRPL 157 (206)
T ss_dssp EEEEEESEEEEEEEE
T ss_pred ceeeeeeEeEEEEEc
Confidence 44 89999999984
No 84
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=90.29 E-value=5.1 Score=39.57 Aligned_cols=140 Identities=11% Similarity=0.138 Sum_probs=75.2
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003251 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (836)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 480 (836)
.+-+|.-.+..+-+++-|..+|-+.||. |.-++|++.|..+ . .....++...+ ..+.-|.=|.+. .
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~----~~~~~~l~~~~~~----~--~~r~~i~~~~~--g~~~~w~s~~~~--~ 70 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSE----YAEAEVLEEDGDT----V--RFRLTMHPDAN--GTVWSWVSERTL--D 70 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccc----eEEEEEEEecCCe----E--EEEEEEEeccC--CEEEEEEEEEEe--c
Confidence 4567777899999999999999999999 5777888754322 1 11122223222 122223234332 3
Q ss_pred CceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 003251 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (836)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlat 560 (836)
...|-|.=..+.. .+ + ..+=--..+++.++| |+|++..+++...-. .+.-+++....--.-+.=+++
T Consensus 71 ~~~~~i~~~~~~~---~p----~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ 137 (146)
T cd08860 71 PVNRTVRARRVET---GP----F---AYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQMAR 137 (146)
T ss_pred CCCcEEEEEEecC---CC----c---ceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHHHH
Confidence 3334333112111 11 1 122223446888887 999999998865211 222222322222223445677
Q ss_pred HHHHHHH
Q 003251 561 LQRQCEC 567 (836)
Q Consensus 561 LqRqcer 567 (836)
|.+.+|+
T Consensus 138 Lk~~aE~ 144 (146)
T cd08860 138 IKKKIEA 144 (146)
T ss_pred HHHHhhh
Confidence 7777765
No 85
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=89.50 E-value=4.7 Score=37.89 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=64.5
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecC
Q 003251 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (836)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~ 481 (836)
+-.+...+.++.++|.|.+.|.+-+|.+. .+++++. +...+ +....+ .|+ ..|--...+|..--++
T Consensus 6 ~~~i~a~~e~v~~~l~D~~~~~~w~p~~~----~~~~~~~-------~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~ 71 (144)
T cd05018 6 EFRIPAPPEEVWAALNDPEVLARCIPGCE----SLEKIGP-------NEYEA-TVKLKV-GPV-KGTFKGKVELSDLDPP 71 (144)
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhccchh----hccccCC-------CeEEE-EEEEEE-ccE-EEEEEEEEEEEecCCC
Confidence 44567788999999999999999999854 4566642 22221 222222 232 2232223455543344
Q ss_pred ceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhh
Q 003251 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 546 (836)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~ 546 (836)
..+++.-..... .. + ...=--+-+++. +|.++|+|.-+++..- .+..|..+++
T Consensus 72 ~~~~~~~~~~~~---~~----~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 72 ESYTITGEGKGG---AG----F---VKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred cEEEEEEEEcCC---Cc----e---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 554444221110 00 1 111122346777 6679999999999653 3444444444
No 86
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.06 E-value=6.8 Score=37.19 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=73.9
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccce-eeEEeeece
Q 003251 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVRE-VNFLRFCKQ 478 (836)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re-~~flRyckq 478 (836)
|.+-.|..++..+-++|.|.+.|.+-+|.+ ...+++..+. ++. . ++.. .|. +.+++|+..
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v----~~~~~l~~~~----~~~-~-~~~~---------~~~~~~~~~~~~~ 62 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNL----AESRLLERNG----NRV-V-LEQT---------GKQGILFFKFEAR 62 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCc----eEEEEEEcCC----CEE-E-EEEe---------eeEEEEeeeeeEE
Confidence 346677788999999999999999999994 5666675421 121 1 1111 111 222333222
Q ss_pred ecCceEEEEEEecCCccCCCCCCCccceeec----C--Ccc-eEeecCC-CccEEEEEEeeeeccccccccchhhhccch
Q 003251 479 HAEGVWAVVDVSIDTIRETSGAPAFVNCRRL----P--SGC-VVQDMPN-GYSKVTWVEHAEYDESQVHQLYKPLIISGM 550 (836)
Q Consensus 479 ~~~g~waVvDvSld~~~~~~~~~~~~~~~r~----P--SGc-lIq~~~n-G~skVtwVeH~e~d~~~v~~lyrpl~~Sg~ 550 (836)
++.++... .+.+ ..++++.. + .|+ -+++.++ |.++|+|--|++... . ++-++++.-+
T Consensus 63 ------v~~~~~~~--~~~~---~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~---~p~~l~~~~~ 127 (144)
T cd08866 63 ------VVLELRER--EEFP---RELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-F---APVFLVEFVL 127 (144)
T ss_pred ------EEEEEEEe--cCCC---ceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-C---CCHHHHHHHH
Confidence 12221110 0000 01111111 0 122 3578887 789999987777653 2 3336666666
Q ss_pred hHHHHHHHHHHHHHHH
Q 003251 551 GFGAQRWVATLQRQCE 566 (836)
Q Consensus 551 afGA~rWlatLqRqce 566 (836)
-=+.++-++.|+++||
T Consensus 128 ~~~~~~~l~~lr~~ae 143 (144)
T cd08866 128 RQDLPTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6667778888888776
No 87
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=88.95 E-value=1.1 Score=42.95 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=27.2
Q ss_pred CCCCCHHHHH-HHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccc
Q 003251 138 YHRHTPQQIQ-ELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (836)
Q Consensus 138 RtrfT~~Ql~-~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQ 183 (836)
|.+||.++.. .+...+.. . ....++|+++|+++.++..|.+
T Consensus 10 rr~ys~EfK~~aV~~~~~~-g----~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 10 RRRRTTQEKIAIVQQSFEP-G----MTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCCHHHHHHHHHHHHcC-C----CCHHHHHHHHCcCHHHHHHHHH
Confidence 3457777654 33444432 2 2456789999999999999943
No 88
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=88.37 E-value=14 Score=39.66 Aligned_cols=185 Identities=18% Similarity=0.188 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCC-----Cc-EEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHh
Q 003251 591 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVD-----ED-VRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNF 664 (836)
Q Consensus 591 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~-----~d-Vrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~F 664 (836)
-|+.||..-+.-|- .+.-...--|.+. .+.+. |. .+++.+.. .+..+...+..+-++-.+.+.|..|.++
T Consensus 3 ~~~~lA~~am~Ell-~~a~~~~plWi~~-~~~~~~~l~~dey~~~f~~~~--~~~~~~~~~eASR~~glV~m~~~~lVe~ 78 (229)
T cd08875 3 GLLELAEEAMDELL-KLAQGGEPLWIKS-PGMKPEILNPDEYERMFPRHG--GSKPGGFTTEASRACGLVMMNAIKLVEI 78 (229)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCCceec-CCCCccccCHHHHhhcccCcC--CCCCCCCeEEEEeeeEEEecCHHHHHHH
Confidence 47889999999998 4445556789987 44321 22 22222221 1111234577888999999999999999
Q ss_pred hhccccchh-hhhhcCCCCcceEeecccCC--CCCceEEEEEeccCC----CCCCceEEEEccccCCCCcEEEEe-ecch
Q 003251 665 LRDERLRSE-WDILSNGGPMQEMAHIAKGQ--DHGNCVSLLRASAIN----ANQSSMLILQETCTDAAGSLVVYA-PVDI 736 (836)
Q Consensus 665 Lrde~~R~e-Wd~ls~G~~vqe~~~ia~g~--~~gn~vsllr~~~~~----~~~~~~liLQes~td~sgs~vVyA-PvD~ 736 (836)
|.|..++.| .+-.+.-. ..+.-|.+|. .++..+.|+..+-.- ..-.+..+|.-|+--.-|..+|-- .+|-
T Consensus 79 lmD~~kW~~~Fp~iv~~a--~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~ 156 (229)
T cd08875 79 LMDVNKWSELFPGIVSKA--KTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDG 156 (229)
T ss_pred HhChhhhhhhhhhhccee--eEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecc
Confidence 999555554 33333322 2222233333 456678887765221 124689999975556788776633 3332
Q ss_pred hhhhhhhcCCCCC---CccccCCCcEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccc
Q 003251 737 PAMHVVMNGGDSA---YVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKL 809 (836)
Q Consensus 737 ~~m~~vm~G~ds~---~v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l 809 (836)
.. +..-+. .--.+||||-|=|- .+|+|-+|+-=++-++..+.-.+
T Consensus 157 ~~-----~~p~~~~~~r~~~~PSGcLIq~~-----------------------~nG~SkVtwVeH~e~d~~~~~~l 204 (229)
T cd08875 157 VQ-----TAPPPASFVRCRRLPSGCLIQDM-----------------------PNGYSKVTWVEHVEVDEKPVHLL 204 (229)
T ss_pred cc-----cCCCCCCccEEEEecCcEEEEEC-----------------------CCCceEEEEEEEEeccCCccccc
Confidence 10 111111 23489999999771 12578888887777766544433
No 89
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=88.17 E-value=3.4 Score=43.52 Aligned_cols=103 Identities=18% Similarity=0.158 Sum_probs=70.3
Q ss_pred cceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEee-eceecC-ceEEEEEEecCCccCCCCCCCccceeec
Q 003251 432 RTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRF-CKQHAE-GVWAVVDVSIDTIRETSGAPAFVNCRRL 509 (836)
Q Consensus 432 ~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRy-ckq~~~-g~waVvDvSld~~~~~~~~~~~~~~~r~ 509 (836)
.++.++++..+. +....+.|.+..+|-| +..|+|..|.. +...+. ..++|+..+++.-.-......++|.+ -
T Consensus 76 ~~~~l~~~~~~~----~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y 149 (208)
T cd08864 76 DLEPVEVDGEGD----GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVLGR-Y 149 (208)
T ss_pred eeEEeeecCCCc----cceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEEEE-E
Confidence 345555544332 2356888899999999 89999999999 666652 67899999987432110112478887 6
Q ss_pred CCcceEeecCC---CccEEEEEEeeeeccc-cccc
Q 003251 510 PSGCVVQDMPN---GYSKVTWVEHAEYDES-QVHQ 540 (836)
Q Consensus 510 PSGclIq~~~n---G~skVtwVeH~e~d~~-~v~~ 540 (836)
=||..|+..|. +-.+|+|+==...|+. .||.
T Consensus 150 ~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 150 ASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPR 184 (208)
T ss_pred EEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcH
Confidence 79999998885 4789999993344444 2443
No 90
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=86.34 E-value=5.1 Score=42.63 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=78.1
Q ss_pred EechhhHHHHhcCh---hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCc
Q 003251 406 IINSLALVETLMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEG 482 (836)
Q Consensus 406 ~~~~~~LVe~lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g 482 (836)
.+.|..|-+.|+|. .+|=.+ |.+-.||+..+. .|+ .++|-+.+.|.|+- .||+-++|---+.++.
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~----vi~~e~ie~d~~--tg~-----~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k 130 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDM----VIELETIEEDPV--TGT-----EVVYWVKKFPFPMS-NRDYVYVRRWWESDEK 130 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHH----hhhheeeeecCC--CCc-----eEEEEEEeCCcccC-CccEEEEEEEEecCCc
Confidence 45788999999995 599887 444455555441 222 78999999999886 5999999877777777
Q ss_pred eEEEEEEecCCccCCCCCCCccceeecCCcceEe-----ecCCC-ccEEEEEEe
Q 003251 483 VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQ-----DMPNG-YSKVTWVEH 530 (836)
Q Consensus 483 ~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq-----~~~nG-~skVtwVeH 530 (836)
...||-.|+..-.- |.....+|..-.=||.+|+ +-++| .|-++|++|
T Consensus 131 ~~~i~s~~v~h~s~-P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 131 DYYIVSKSVQHPSY-PPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred eEEEEEecccCCCc-CCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 77777777663211 1111357888889999999 55555 355556554
No 91
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=86.12 E-value=8.2 Score=36.64 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=77.5
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003251 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (836)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 480 (836)
.+..|...+..+.+++-|.+.|.+.+|.+ ...+|+..+. ++ +.+++.+..|. -.|++. .|++-. .
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~----~~~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~ 67 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWC----TASRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-P 67 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCc----cccEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-C
Confidence 35566778889999999999999999994 5566666432 12 22333333332 244443 333321 1
Q ss_pred CceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 003251 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (836)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlat 560 (836)
+. .+ -=.++++ + + ..+=--..+++.++|.|+|+|.-|++..-. |+..|++.-+.=..++-|.+
T Consensus 68 ~~-~i-~~~~~~g----~----~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l~~ 130 (138)
T cd07813 68 PE-SI-EAELVDG----P----F---KHLEGEWRFKPLGENACKVEFDLEFEFKSR----LLEALAGLVFDEVAKKMVDA 130 (138)
T ss_pred CC-EE-EEEecCC----C----h---hhceeEEEEEECCCCCEEEEEEEEEEECCH----HHHHHHHHHHHHHHHHHHHH
Confidence 33 32 1122222 1 1 111123457889999999999999998733 33333333233336677888
Q ss_pred HHHHHHH
Q 003251 561 LQRQCEC 567 (836)
Q Consensus 561 LqRqcer 567 (836)
+.+.|++
T Consensus 131 f~~~~~~ 137 (138)
T cd07813 131 FEKRAKQ 137 (138)
T ss_pred HHHHHhh
Confidence 8777765
No 92
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=85.44 E-value=43 Score=35.05 Aligned_cols=195 Identities=11% Similarity=0.113 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhh-ccc
Q 003251 591 SMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLR-DER 669 (836)
Q Consensus 591 sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLr-de~ 669 (836)
+-.++++.....|-.-. ....+|... . .+.++++|.++... +. | --.+.-.-+|+|++.||++|. |-.
T Consensus 5 ~y~~~~~~~~~~~~~~~--~~~~~W~~~-~-~~~~gi~v~s~~~~---~~--~--k~~k~e~~i~~~~~~l~~~l~~d~e 73 (209)
T cd08905 5 SYIKQGEEALQKSLSIL--QDQEGWKTE-I-VAENGDKVLSKVVP---DI--G--KVFRLEVVVDQPLDNLYSELVDRME 73 (209)
T ss_pred HHHHHHHHHHHHHHHHh--ccccCCEEE-E-ecCCCCEEEEEEcC---CC--C--cEEEEEEEecCCHHHHHHHHHhchh
Confidence 33445555555555444 245689965 2 23567888886652 22 1 234455677999999996666 568
Q ss_pred cchhhhhhcCCCCcceEeecccCCCCCceEEEEEeccC--C-CCCCceEEEEccccCCCCcEE-EEeecchhhhhhhhcC
Q 003251 670 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--N-ANQSSMLILQETCTDAAGSLV-VYAPVDIPAMHVVMNG 745 (836)
Q Consensus 670 ~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~--~-~~~~~~liLQes~td~sgs~v-VyAPvD~~~m~~vm~G 745 (836)
.+.+|+..+.. ++.+.+| +..++|.-....+. . -+..++++++-..-+. +.++ +.--++.+.+ .
T Consensus 74 ~~~~W~~~~~~--~~vl~~i----d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~-~~~~~~~~s~~~~~~-----P 141 (209)
T cd08905 74 QMGEWNPNVKE--VKILQRI----GKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRG-STCVLAGMATHFGLM-----P 141 (209)
T ss_pred hhceecccchH--HHHHhhc----CCCceEEEEEeccCCCCccCccceEEEEEEEEcC-CcEEEEEEeecCCCC-----C
Confidence 99999974432 2223333 33344444321111 1 3446777776422232 3333 2222332221 1
Q ss_pred CCCCC--ccccCCCcEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-Hhhhhh
Q 003251 746 GDSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLIS 822 (836)
Q Consensus 746 ~ds~~--v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~ 822 (836)
..+.+ +...++|+.+-|-+.. .+.|.+|.-+++= |...|..--|.. +-...-
T Consensus 142 ~~~~~VR~~~~~~~w~l~p~~~~---------------------~~~t~v~~~~~~D----pkG~iP~~lvN~~~~~~~~ 196 (209)
T cd08905 142 EQKGFIRAENGPTCIVLRPLAGD---------------------PSKTKLTWLLSID----LKGWLPKSIINQVLSQTQV 196 (209)
T ss_pred CCCCeEEEEeeccEEEEEECCCC---------------------CCceEEEEEEeec----CCCCCCHHHHHHHhHHhHH
Confidence 11222 2356666666662211 1357666555543 333343333333 233344
Q ss_pred HHHHHHHHHhc
Q 003251 823 CTVQKIKAALQ 833 (836)
Q Consensus 823 ~tv~~Ik~AL~ 833 (836)
.|++.+|..|.
T Consensus 197 ~~~~~Lr~~~~ 207 (209)
T cd08905 197 DFANHLRQRMA 207 (209)
T ss_pred HHHHHHHHHHh
Confidence 57777777765
No 93
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=84.92 E-value=2.6 Score=41.20 Aligned_cols=86 Identities=24% Similarity=0.302 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhh-cccceeeeeccchhhhHHHHHHHHhhhhHHHHHhHHHHHhhhhHHh
Q 003251 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRL-CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (836)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L-gLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e 217 (836)
.+|+.+++..+- -.+|=++| |++...|--|=|.||+-.-|-.........-++.+.|..++..+.+
T Consensus 22 d~lsDd~LvsmS-------------VReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSMS-------------VRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHhh-------------HHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888877661 12333444 7888888889898887655444333333333444555555555554
Q ss_pred hhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHh
Q 003251 218 AMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (836)
Q Consensus 218 a~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~ 258 (836)
|..+|+.||++++.|++-..
T Consensus 89 ---------------------qv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 89 ---------------------QVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888876443
No 94
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=84.80 E-value=1.5 Score=45.77 Aligned_cols=93 Identities=14% Similarity=0.153 Sum_probs=60.3
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhhcCCCCcceEee
Q 003251 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAH 688 (836)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ 688 (836)
-.+.+|... .+ .++|+|-+|... |. .+.--++...++ ++++.|+++|.|...|.+||...- |+..
T Consensus 22 ~~~~~W~l~-~~--~~~i~Vy~r~~~---~s---~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~-----~~~~ 87 (207)
T cd08910 22 LDGAAWELL-VE--SSGISIYRLLDE---QS---GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVK-----ELYE 87 (207)
T ss_pred CCCCCeEEE-Ee--cCCeEEEEeccC---CC---CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHH-----hhee
Confidence 344579977 33 578999988752 22 244677777889 999999999999999999998532 2222
Q ss_pred cccCCCCCceEEEEEeccCC-CCCCceEEEEc
Q 003251 689 IAKGQDHGNCVSLLRASAIN-ANQSSMLILQE 719 (836)
Q Consensus 689 ia~g~~~gn~vsllr~~~~~-~~~~~~liLQe 719 (836)
. . ++++.|--.+++..= -+..++.+++.
T Consensus 88 ~--~-~~~~~i~y~~~k~PwPvs~RD~V~~r~ 116 (207)
T cd08910 88 K--E-CDGETVIYWEVKYPFPLSNRDYVYIRQ 116 (207)
T ss_pred e--c-CCCCEEEEEEEEcCCCCCCceEEEEEE
Confidence 1 1 334555555444221 34456766664
No 95
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=84.44 E-value=23 Score=33.02 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=72.7
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003251 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (836)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 480 (836)
.+..|...+.++.+.|.|.+.|.+.+|. +..++++..+.. |.-...+ +.+- ..+.++.+.++|...-
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~----~~~~~~~~~~~~----~~~~~~~--~~~~--~~~~~~~~~~~~~~~~- 72 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPK----VKSVEVLLRDND----GRPEMVR--IGVG--AYGIKDTYALEYTWDG- 72 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcc----eEEEEEeccCCC----CCEEEEE--EEEe--eeeEEEEEEEEEEEcC-
Confidence 4567788899999999999999999998 455666655432 2222222 2221 2244555556665432
Q ss_pred Cce--EEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHH
Q 003251 481 EGV--WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWV 558 (836)
Q Consensus 481 ~g~--waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWl 558 (836)
... |-+.+. .. +.... .-.-+++.++ .|+|+|.-+++..- . +...++....--+.+.-+
T Consensus 73 ~~~i~~~~~~~-------~~----~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 133 (140)
T cd07819 73 AGSVSWTLVEG-------EG----NRSQE---GSYTLTPKGD-GTRVTFDLTVELTV-P---LPGFLKRKAEPLVLDEAL 133 (140)
T ss_pred CCcEEEEEecc-------cc----eeEEE---EEEEEEECCC-CEEEEEEEEEEecC-C---CCHHHHHHhhhHHHHHHH
Confidence 222 222111 01 11111 1256788877 59999999998754 2 233334333333344445
Q ss_pred HHHHHH
Q 003251 559 ATLQRQ 564 (836)
Q Consensus 559 atLqRq 564 (836)
..|.++
T Consensus 134 ~~l~~~ 139 (140)
T cd07819 134 KGLKKR 139 (140)
T ss_pred HhHhhh
Confidence 555443
No 96
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=83.95 E-value=0.56 Score=56.50 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=43.0
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 146 IQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 146 l~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
...|+.+|..|..|+..+...+|.+.||+.+.||.||++++++...
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~s 613 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMS 613 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhh
Confidence 7789999999999999999999999999999999999999988664
No 97
>PRK10724 hypothetical protein; Provisional
Probab=83.39 E-value=23 Score=35.73 Aligned_cols=137 Identities=12% Similarity=0.132 Sum_probs=83.4
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003251 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (836)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 479 (836)
+.+.+|.-.+.++.+.+.|.++|-+.+|- |...+|+.-.. ++ +.+++.+--.-+ ++-+.-|+.-.
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~----~~~s~vl~~~~----~~----~~a~l~v~~~g~--~~~f~srv~~~- 82 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPG----CTGSRVLESTP----GQ----MTAAVDVSKAGI--SKTFTTRNQLT- 82 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcc----cCeEEEEEecC----CE----EEEEEEEeeCCc--cEEEEEEEEec-
Confidence 45678888999999999999999999888 66677776433 12 467776644433 33333333332
Q ss_pred cCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 003251 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 559 (836)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWla 559 (836)
.++ .+.+ ..++ ++ .+.+=.-.-+++.++|.|+|+.--+.|+.. .||.+++....-=.|++-+.
T Consensus 83 ~~~-~I~~-~~~~----Gp-------F~~l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~~~~~~~~~~~mv~ 145 (158)
T PRK10724 83 SNQ-SILM-QLVD----GP-------FKKLIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAFGRVFKELASNMVQ 145 (158)
T ss_pred CCC-EEEE-EecC----CC-------hhhccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHHHHHHHHHHHHHHH
Confidence 333 3322 2222 22 123333344678887789999998888654 34444443333344667777
Q ss_pred HHHHHHHHH
Q 003251 560 TLQRQCECL 568 (836)
Q Consensus 560 tLqRqcerl 568 (836)
+..+-|+.+
T Consensus 146 AF~~Ra~~~ 154 (158)
T PRK10724 146 AFTVRAKEV 154 (158)
T ss_pred HHHHHHHHH
Confidence 776656554
No 98
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=82.60 E-value=1.9 Score=46.39 Aligned_cols=58 Identities=26% Similarity=0.353 Sum_probs=43.5
Q ss_pred CCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhc
Q 003251 610 STVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 678 (836)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 678 (836)
...++|..- .. .++|+|-++... . +++-+.=+-+++|++.||++|.|...|.+||...
T Consensus 56 ~~~~~W~l~-~~--~~gI~Vyt~~~s-----~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~ 113 (240)
T cd08913 56 VAKDNWVLS-SE--KNQVRLYTLEED-----K---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHY 113 (240)
T ss_pred cccCCCEEE-Ec--cCCEEEEEEeCC-----C---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhc
Confidence 456689865 33 589999996531 1 2344555677999999999999999999999743
No 99
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=81.58 E-value=9.5 Score=36.09 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=23.5
Q ss_pred eeEEEechhhHHHHhcChhhhhhhccc
Q 003251 402 TGMVIINSLALVETLMDPNRWAEMFPC 428 (836)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~ 428 (836)
+.+|.-.+..+-++|-|.++|-+.+|+
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 456777889999999999999998887
No 100
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=81.29 E-value=7 Score=41.90 Aligned_cols=39 Identities=33% Similarity=0.366 Sum_probs=26.0
Q ss_pred cchhhhHHHHHHHHh--hhhHHHHHhHHHHHhhhhHHhhhc
Q 003251 182 FQNRRTQMKTQLERH--ENSLLRQENDKLRAENMSIRDAMR 220 (836)
Q Consensus 182 FQNRRaK~Kkk~~r~--e~~~l~~en~~L~~en~~l~ea~~ 220 (836)
-||-|-|.|.+..+. +-..|..+|++|+.||+.|++..+
T Consensus 81 AQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~ 121 (292)
T KOG4005|consen 81 AQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINE 121 (292)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666555443 344577888888888888887654
No 101
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=80.72 E-value=37 Score=31.59 Aligned_cols=134 Identities=9% Similarity=0.003 Sum_probs=71.5
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecC
Q 003251 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (836)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~ 481 (836)
+..|...+..+-++|.|.+.|.+-+|.+ ..+++++. .+. ++.+-.|....+++ ..|++. .+.
T Consensus 5 ~i~I~ap~e~V~~~~~D~~~~~~w~~~~----~~~~~~~~------~~~------~~~~~~~~g~~~~~-~~~v~~-~~~ 66 (139)
T cd07817 5 SITVNVPVEEVYDFWRDFENLPRFMSHV----ESVEQLDD------TRS------HWKAKGPAGLSVEW-DAEITE-QVP 66 (139)
T ss_pred EEEeCCCHHHHHHHHhChhhhHHHhhhh----cEEEEcCC------Cce------EEEEecCCCCcEEE-EEEEec-cCC
Confidence 4456667889999999999999999974 44566532 111 11112232333433 345544 334
Q ss_pred ceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 003251 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 561 (836)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatL 561 (836)
+..++.. ..++.. . .....+ +++.++|.|+||+--|.+......-.++-+++..-+-=..+++|..|
T Consensus 67 ~~~i~~~-~~~~~~--~----~~~~~~------f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 133 (139)
T cd07817 67 NERIAWR-SVEGAD--P----NAGSVR------FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRF 133 (139)
T ss_pred CCEEEEE-ECCCCC--C----cceEEE------EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHH
Confidence 4433222 222211 1 111222 46777778999999999877433323333444333333345555555
Q ss_pred HHHHH
Q 003251 562 QRQCE 566 (836)
Q Consensus 562 qRqce 566 (836)
.+++|
T Consensus 134 k~~aE 138 (139)
T cd07817 134 KQLVE 138 (139)
T ss_pred HHHhh
Confidence 55544
No 102
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=78.70 E-value=1.7 Score=36.08 Aligned_cols=46 Identities=13% Similarity=0.238 Sum_probs=34.4
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchh
Q 003251 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNR 185 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNR 185 (836)
||+|..+|.+|...+-..++... ...+||+++|++..+|.-|..||
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 46677899988888878887765 57789999999999999998875
No 103
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=78.67 E-value=55 Score=30.21 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=27.7
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEee
Q 003251 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (836)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (836)
+..|...+.++-++|.|...|.+-+|.+ ..+++++
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~----~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGV----KSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTE----EEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhce----EEEEEcc
Confidence 4567789999999999999999988874 4566666
No 104
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.66 E-value=5.8 Score=35.80 Aligned_cols=61 Identities=30% Similarity=0.438 Sum_probs=43.3
Q ss_pred HHHHHHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH----HHhHHhhcc
Q 003251 190 KTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGKF 264 (836)
Q Consensus 190 Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~----r~~~~~~~~ 264 (836)
|-++.-..-..|+-+.+.|+++|..+.+.... .......|..||.+||+|.. |++++.+|+
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~--------------~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN--------------AQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556677888889999988888887641 12234569999999999974 677766553
No 105
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.54 E-value=4 Score=33.06 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=29.6
Q ss_pred HHHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhHH
Q 003251 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (836)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 260 (836)
+.+.+...|++.++.|++++.++. .||..|+.|+.++...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~----------------------------~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLK----------------------------KENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHh
Confidence 345677888888888888876655 4778888888776654
No 106
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=78.06 E-value=49 Score=30.52 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=69.8
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecC
Q 003251 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (836)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~ 481 (836)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+. ..|+...++... . +.+. -+|.. .++
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~----~~~~~~~~~~---~~g~~~~~~~~~----g----~~~~-~~i~~-~~~ 68 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAV----ASCELEGGGP---GVGAVRTVTLKD----G----GTVR-ERLLA-LDD 68 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCc----ceEEeecCCC---CCCeEEEEEeCC----C----CEEE-EEehh-cCc
Confidence 3457778899999999999999888863 4566655432 234432222110 0 1111 11111 112
Q ss_pred ceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 003251 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 561 (836)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatL 561 (836)
..-.|. ..+... +.+ +...-.-+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-+..++.|
T Consensus 69 ~~~~i~-~~~~~~-~~~-------~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L 135 (140)
T cd07821 69 AERRYS-YRIVEG-PLP-------VKNYVATIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAAL 135 (140)
T ss_pred cCCEEE-EEecCC-CCC-------cccceEEEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHH
Confidence 100111 111110 011 0111123557788888899999999887755 333444444444455566666
Q ss_pred HHHHH
Q 003251 562 QRQCE 566 (836)
Q Consensus 562 qRqce 566 (836)
.++||
T Consensus 136 ~~~~~ 140 (140)
T cd07821 136 KAALE 140 (140)
T ss_pred HHhhC
Confidence 66553
No 107
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=77.75 E-value=4.7 Score=42.50 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=42.4
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhc
Q 003251 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILS 678 (836)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls 678 (836)
...+|..- .. .+||.|..+++...+|.- - .+---++.-|+.|+||+.+..+|.+||...
T Consensus 21 ~~~~Wkl~-k~--~~~~~v~~k~~~ef~gkl----~--R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v 79 (202)
T cd08902 21 LEEEWRVA-KK--SKDVTVWRKPSEEFGGYL----Y--KAQGVVEDVYNRIVDHIRPGPYRLDWDSLM 79 (202)
T ss_pred cccCcEEE-Ee--CCCEEEEEecCCcCCCce----E--EEEEEecCCHHHHHHHHhcccchhcccchh
Confidence 56799966 43 389999999885545532 1 111112788899999999999999999754
No 108
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=75.73 E-value=48 Score=35.60 Aligned_cols=97 Identities=14% Similarity=0.318 Sum_probs=60.6
Q ss_pred cCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEE-EEEEeeccc-cChhHHHHhhhccccchhhhhhcCCCCcceE
Q 003251 609 ASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEM 686 (836)
Q Consensus 609 ~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL-~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~ 686 (836)
+-..++|... . ..++|+|-+|...+ . |+++ .-++..-++ |+++.++++|.|...|.+||.-... +..+
T Consensus 22 ~~~~~~W~l~-~--~~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~--~~vi 91 (235)
T cd08872 22 DVGADGWQLF-A--EEGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLEN--FHVV 91 (235)
T ss_pred cCCCCCCEEE-E--eCCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhhe--eEEE
Confidence 4455689976 3 25789999987632 2 2332 356777789 9999999999999999999974321 2233
Q ss_pred eecccCCCCCceEEEEEeccCC-CCCCceEEEEc
Q 003251 687 AHIAKGQDHGNCVSLLRASAIN-ANQSSMLILQE 719 (836)
Q Consensus 687 ~~ia~g~~~gn~vsllr~~~~~-~~~~~~liLQe 719 (836)
-+| +..+.|--...+..= .++.++.++.-
T Consensus 92 e~l----~~~~~I~Y~~~k~PwPvs~RD~V~~~~ 121 (235)
T cd08872 92 ETL----SQDTLIFHQTHKRVWPAAQRDALFVSH 121 (235)
T ss_pred Eec----CCCCEEEEEEccCCCCCCCcEEEEEEE
Confidence 333 233343333322211 25567777654
No 109
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.76 E-value=8.8 Score=33.92 Aligned_cols=58 Identities=29% Similarity=0.436 Sum_probs=38.4
Q ss_pred HHHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHH----HHHhHHhhcc
Q 003251 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL----DRVCALAGKF 264 (836)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el----~r~~~~~~~~ 264 (836)
+.-..-..|+-+.+.|+++|..+..... +.......|..||..||+|- +|++++++|+
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q--------------~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQ--------------NAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334445677778888888877766543 11223446889999999986 4777776653
No 110
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.37 E-value=8.1 Score=34.33 Aligned_cols=49 Identities=35% Similarity=0.569 Sum_probs=35.1
Q ss_pred HHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH----HHhHHhhc
Q 003251 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 263 (836)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~----r~~~~~~~ 263 (836)
.-.....|+.+++.|+.+|..+.+ +...|+.||.+|++|.. |+.++.+|
T Consensus 16 aveti~~Lq~e~eeLke~n~~L~~---------------------e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 16 AVETIALLQMENEELKEKNNELKE---------------------ENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556778888888888887775 44578889999998875 55555544
No 111
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=71.51 E-value=4.8 Score=44.37 Aligned_cols=42 Identities=33% Similarity=0.450 Sum_probs=27.4
Q ss_pred hhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH
Q 003251 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (836)
Q Consensus 197 e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (836)
+...+++||++|+.|+..+++++. ...+.|+.||++||+.|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~-----------------~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLE-----------------ILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhc
Confidence 344567778888887777755443 122337888888888663
No 112
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=70.42 E-value=77 Score=29.09 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=70.2
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecC
Q 003251 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAE 481 (836)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~ 481 (836)
+..|...+.++-++|-|.++|.+-.|.+ ..+++++.+.. ..|+.-.+...+ -+ .+--...|++.--.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~----~~~~~~~~~~~--~~g~~~~~~~~~---~g---~~~~~~~~v~~~~p~ 71 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGV----VEVEKITDGPV--GVGTRYHQVRKF---LG---RRIELTYEITEYEPG 71 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCc----eEEEEcCCCCC--cCccEEEEEEEe---cC---ceEEEEEEEEEecCC
Confidence 4456678889999999999999999986 45676754432 234432222221 11 111122344432222
Q ss_pred ceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHH
Q 003251 482 GVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATL 561 (836)
Q Consensus 482 g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatL 561 (836)
..+. ... .. ++. . +.. =.-+++.++| |+|+|-.+++. ..+-.++.+++...+.=+-++++..|
T Consensus 72 ~~~~-~~~-~~----~~~-~-~~~------~~~~~~~~~~-t~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l 134 (140)
T cd08865 72 RRVV-FRG-SS----GPF-P-YED------TYTFEPVGGG-TRVRYTAELEP--GGFARLLDPLMAPAFRRRARAALENL 134 (140)
T ss_pred cEEE-EEe-cC----CCc-c-eEE------EEEEEEcCCc-eEEEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 2221 111 11 110 0 111 1335666664 99999998876 32334445555444444455566666
Q ss_pred HHHHH
Q 003251 562 QRQCE 566 (836)
Q Consensus 562 qRqce 566 (836)
.+.+|
T Consensus 135 k~~~e 139 (140)
T cd08865 135 KALLE 139 (140)
T ss_pred HHHhh
Confidence 55544
No 113
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=64.90 E-value=12 Score=34.35 Aligned_cols=47 Identities=30% Similarity=0.482 Sum_probs=35.6
Q ss_pred HHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhHHh
Q 003251 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (836)
Q Consensus 200 ~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 261 (836)
.+.++++.|+.|.+-|++.+. ..++.-+...||.+|++|+.|+..+-
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve---------------~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVE---------------HNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---------------hCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888888887664 34566678899999999999988653
No 114
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=64.53 E-value=69 Score=29.54 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=34.4
Q ss_pred ceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003251 513 CVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (836)
Q Consensus 513 clIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 566 (836)
+.+.+.+.|.|+|+|.+... .....++..++...+.-+-++|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767889999864222 1122345566777777778888888888876
No 115
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=64.47 E-value=8.2 Score=41.91 Aligned_cols=40 Identities=35% Similarity=0.516 Sum_probs=25.0
Q ss_pred hhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHH
Q 003251 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (836)
Q Consensus 197 e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 254 (836)
....+++||++|++|+..++..+. +.+.|+.||.+||+.|
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~------------------~~~~l~~en~~L~~lL 109 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ------------------ELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHh
Confidence 344566666666666666665443 3445677888777755
No 116
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=63.73 E-value=68 Score=30.61 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=23.4
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccc
Q 003251 401 ETGMVIINSLALVETLMDPNRWAEMFPCM 429 (836)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~i 429 (836)
.+.+|...+..+-+++-|...|-+-.|-.
T Consensus 6 ~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 6 RSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 34568889999999999999998876643
No 117
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=61.68 E-value=28 Score=42.97 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=83.3
Q ss_pred CCCCCceeccCCCCCCcEEEEEecC-CCCCCCCCceEEEEEEeeccccChhHHHHhhhccc-cchhhhhhcC-CCCcceE
Q 003251 610 STVHKWNKLNAGNVDEDVRVMTRKS-VDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDER-LRSEWDILSN-GGPMQEM 686 (836)
Q Consensus 610 s~~~~W~~l~~~~~~~dVrv~~r~~-~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~-~R~eWd~ls~-G~~vqe~ 686 (836)
+....|.-+..- .++||+-.-. .+.-+...+-++ ++-=-++.+|+.||++|-+.. .|.|||.... |.-++++
T Consensus 195 ~~~~~Wr~~~c~---NGlRiF~e~~~~~~~~~~~~~~m--KavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I 269 (719)
T PLN00188 195 FSRKHWRLLQCQ---NGLRIFEELLEVDYLPRSCSRAM--KAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV 269 (719)
T ss_pred cccCCeEEEEee---ccceeehhhhccccccccCCcee--EEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEe
Confidence 555667665222 3567664332 121111122222 223346789999999997444 9999998543 3333333
Q ss_pred eecccCCCCCceEEEEEeccC----CCCCCceEEEEccccCCCCcEEE-EeecchhhhhhhhcCCCCCCc--cccCCCcE
Q 003251 687 AHIAKGQDHGNCVSLLRASAI----NANQSSMLILQETCTDAAGSLVV-YAPVDIPAMHVVMNGGDSAYV--ALLPSGFA 759 (836)
Q Consensus 687 ~~ia~g~~~gn~vsllr~~~~----~~~~~~~liLQes~td~sgs~vV-yAPvD~~~m~~vm~G~ds~~v--~LLPSGF~ 759 (836)
+...+|.-.++... --...+..++.--.-+.-|+|++ |-.|.-+.- .--+.+| -+-|+||.
T Consensus 270 -------D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~c-----PP~kG~VRg~~~pGGwi 337 (719)
T PLN00188 270 -------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENC-----GPQPGFVRAHLESGGFN 337 (719)
T ss_pred -------cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCC-----CCCCCeEEEEEeCCEEE
Confidence 44445553343211 12335666666533356777766 445554331 0012232 37799999
Q ss_pred EcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeeccc
Q 003251 760 IVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVN 802 (836)
Q Consensus 760 I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~ 802 (836)
|.|--... ...+|+||--+|+=..
T Consensus 338 IsPL~~~~-------------------g~~r~lv~~~lqtDlk 361 (719)
T PLN00188 338 ISPLKPRN-------------------GRPRTQVQHLMQIDLK 361 (719)
T ss_pred EEECCCCC-------------------CCCceEEEEEEEEccC
Confidence 99932210 1146888888877543
No 118
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=60.12 E-value=17 Score=43.06 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=14.2
Q ss_pred hhhhhHhhhhhhHHHHHHH
Q 003251 239 EEQHLRIENARLKDELDRV 257 (836)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~ 257 (836)
|.++|+.||+.||++|+-+
T Consensus 317 Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 317 ENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 5667788888888887654
No 119
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=57.68 E-value=1.9 Score=37.14 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeecc
Q 003251 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (836)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWF 182 (836)
++|++||+++...+-..+.. ......++|+++|+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~----~g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLE----SGESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHHH----HHCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCceEeeecccccccccccHHH
Confidence 35567999887777665521 23567889999999999998884
No 120
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.12 E-value=31 Score=43.41 Aligned_cols=58 Identities=28% Similarity=0.341 Sum_probs=41.3
Q ss_pred hhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhHHh
Q 003251 198 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (836)
Q Consensus 198 ~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 261 (836)
...++..++.|..+..-|+++|.+. |..+....+.+-.||.+.|+|||+-|-|++.+.
T Consensus 334 ve~lkEr~deletdlEILKaEmeek------G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDls 391 (1243)
T KOG0971|consen 334 VEALKERVDELETDLEILKAEMEEK------GSDGQAASSYQFKQLEQQNARLKDALVRLRDLS 391 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344555566666666788888765 333334457889999999999999999887654
No 121
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.45 E-value=21 Score=42.12 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=27.4
Q ss_pred HHHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhHH
Q 003251 193 LERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (836)
Q Consensus 193 ~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 260 (836)
....+|..|++||++|+.....+.+.+.+. +.-+.+++..|-..|++|+.++...
T Consensus 77 ~l~~~N~~l~~eN~~L~~r~~~id~~i~~a-------------v~~~~~~~~~~~~ql~~~~~~~~~~ 131 (472)
T TIGR03752 77 KLISENEALKAENERLQKREQSIDQQIQQA-------------VQSETQELTKEIEQLKSERQQLQGL 131 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------------HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666544444444311 1123344555555566665555443
No 122
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=49.56 E-value=1.1e+02 Score=36.11 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=54.8
Q ss_pred CCCCCHHHHHHHHHh-hhc-CCCCCHHHHHHHHHhhcccceeeeeccchhhhH-HHHHHHHhhhhHHHHHhHHHHHhhhh
Q 003251 138 YHRHTPQQIQELESL-FKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ-MKTQLERHENSLLRQENDKLRAENMS 214 (836)
Q Consensus 138 RtrfT~~Ql~~LE~~-F~~-~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK-~Kkk~~r~e~~~l~~en~~L~~en~~ 214 (836)
--++|.+....|.+. |.. ..+|..+.-+++-++.. .=..|+|.+ ++|++++.--..|......-.+||++
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrvR-------RKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqe 290 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRVR-------RKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQE 290 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHHH-------HHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHH
Confidence 446888888888765 322 34666666666555552 112233332 22222222222334444444555555
Q ss_pred HHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhHHhh
Q 003251 215 IRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAG 262 (836)
Q Consensus 215 l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~~ 262 (836)
|+. +.++|..+|..|-++|.++.++..
T Consensus 291 L~k---------------------kV~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 291 LQK---------------------KVEELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHH---------------------HHHHHhhccHHHHHHHHHHHHHHh
Confidence 554 667899999999999998876653
No 123
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=46.66 E-value=17 Score=37.31 Aligned_cols=20 Identities=50% Similarity=0.625 Sum_probs=6.4
Q ss_pred hhhhhHhhhhhhHHHHHHHh
Q 003251 239 EEQHLRIENARLKDELDRVC 258 (836)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~ 258 (836)
|++.|++|++|||||+..+.
T Consensus 25 EKE~L~~~~QRLkDE~RDLK 44 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLK 44 (166)
T ss_dssp HHHHHHHCH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667788888887776554
No 124
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.46 E-value=37 Score=32.44 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=14.4
Q ss_pred hhhhhHhhhhhhHHHHHHHhH
Q 003251 239 EEQHLRIENARLKDELDRVCA 259 (836)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~~ 259 (836)
+..+|++||..|++.|.+...
T Consensus 37 EN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 37 ENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 455677788888777766543
No 125
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=44.30 E-value=2.1e+02 Score=27.49 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=63.5
Q ss_pred EEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCce
Q 003251 404 MVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGV 483 (836)
Q Consensus 404 ~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~ 483 (836)
.+...+.++-+++.|.++|.+-.|. +..+++++.+.....+...+ +... ...|.+.-+..|+...-....
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~----v~~~~~~~~~~~~~~g~~~~-~~~~-----~~~~~~~~~~~~v~~~~p~~~ 77 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPG----VERVVELEPGDEAGIGARRR-YTWR-----GLLPYRLRFELRVTRIEPLSL 77 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhc----eEEEEEccCCCCCCcceEEE-EEEE-----ecCCcEEEEEEEEEeecCCcE
Confidence 4556788999999999999999887 46677776322112122222 1111 112222223344444334455
Q ss_pred EEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccc---cccccchhhhcc
Q 003251 484 WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDES---QVHQLYKPLIIS 548 (836)
Q Consensus 484 waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~---~v~~lyrpl~~S 548 (836)
|++. . ++. .. ...+ .-|++.++ +|+||+-.+++..-- ..+.++.+++..
T Consensus 78 ~~~~-~--~g~---~~--~~~~-------~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~ 129 (146)
T cd07824 78 LEVR-A--SGD---LE--GVGR-------WTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFRW 129 (146)
T ss_pred EEEE-E--EEe---ee--EEEE-------EEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHHH
Confidence 5442 2 211 00 0111 23666555 499999888887542 355555555543
No 126
>smart00338 BRLZ basic region leucin zipper.
Probab=43.60 E-value=77 Score=26.98 Aligned_cols=40 Identities=33% Similarity=0.485 Sum_probs=26.2
Q ss_pred HHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHH
Q 003251 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (836)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 254 (836)
++..-..|..+...|..+|..|+..+ .+|..|+..|++++
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~---------------------~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEI---------------------ERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 34445556777777777777777633 35667777777765
No 127
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=42.39 E-value=29 Score=39.06 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=14.2
Q ss_pred hhhHHHHHhHHHHHhhhhHHhhh
Q 003251 197 ENSLLRQENDKLRAENMSIRDAM 219 (836)
Q Consensus 197 e~~~l~~en~~L~~en~~l~ea~ 219 (836)
|+..||+||++|+.||..|+..+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eV 55 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEV 55 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHH
Confidence 45566666666666666666533
No 128
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=41.66 E-value=23 Score=40.14 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=25.6
Q ss_pred hhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH
Q 003251 197 ENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (836)
Q Consensus 197 e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (836)
....+++||++|++||..|++.+. +.+.+..||++|++.+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~------------------~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLK------------------SYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhhc
Confidence 345566667777777766666553 34456678888776554
No 129
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=41.38 E-value=49 Score=36.65 Aligned_cols=42 Identities=31% Similarity=0.359 Sum_probs=25.7
Q ss_pred HhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHH
Q 003251 195 RHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (836)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 254 (836)
-.+...+..+|+.|++++..+.+... +.+.|+.||.+||+.|
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~~------------------~~~~l~~EN~~Lr~lL 106 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLLE------------------EVESLEEENKRLKELL 106 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHh
Confidence 34445556666666666666555432 4556777777777765
No 130
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=40.08 E-value=45 Score=32.08 Aligned_cols=19 Identities=37% Similarity=0.767 Sum_probs=14.6
Q ss_pred hhhhhHhhhhhhHHHHHHH
Q 003251 239 EEQHLRIENARLKDELDRV 257 (836)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~ 257 (836)
+..+|++||..||+.|+++
T Consensus 37 EN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 37 ENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5567888888888888765
No 131
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=39.16 E-value=15 Score=47.67 Aligned_cols=60 Identities=18% Similarity=0.098 Sum_probs=53.1
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
+-.+++++.-|...|..+|+...||.-.++..+++-|++..|.+-.|||++++++.+...
T Consensus 445 ~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~ 504 (1406)
T KOG1146|consen 445 LLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHP 504 (1406)
T ss_pred hhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccc
Confidence 445678899999999999999999999999999999999999999999998888875433
No 132
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.11 E-value=62 Score=34.81 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=32.9
Q ss_pred HHHHHHHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHh
Q 003251 189 MKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (836)
Q Consensus 189 ~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~ 258 (836)
.|-+...+++..|..+++.|.++..+.++.++ +|+.||++|.++++++-
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk---------------------~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLK---------------------RLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhch
Confidence 33344555666677777777777666666553 68889999888876543
No 133
>smart00340 HALZ homeobox associated leucin zipper.
Probab=38.97 E-value=27 Score=28.11 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=16.7
Q ss_pred hhhHhhhhhhHHHHHHHhHH
Q 003251 241 QHLRIENARLKDELDRVCAL 260 (836)
Q Consensus 241 q~L~~ENa~Lk~el~r~~~~ 260 (836)
..|..||.||+.|++.++++
T Consensus 15 e~LteeNrRL~ke~~eLral 34 (44)
T smart00340 15 ESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35778999999999998865
No 134
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=38.19 E-value=15 Score=35.40 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.5
Q ss_pred EeeccccChhHHHHhhhccccchhhh
Q 003251 650 TSVWLPVSPQRLFNFLRDERLRSEWD 675 (836)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd 675 (836)
-++.++.||++||+||.|.....+|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999999884
No 135
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.89 E-value=1.3e+02 Score=25.55 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=14.4
Q ss_pred HhhhhHHHHHhHHHHHhhhhHHh
Q 003251 195 RHENSLLRQENDKLRAENMSIRD 217 (836)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~e 217 (836)
...-..|....+.|..+|..|+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777666664
No 136
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=36.77 E-value=1.8e+02 Score=26.71 Aligned_cols=70 Identities=13% Similarity=0.126 Sum_probs=51.0
Q ss_pred hHHHHHHHHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhH
Q 003251 187 TQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (836)
Q Consensus 187 aK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~ 259 (836)
.+.+|...+++...|+.+..+-..-+..|..++....++-+..| ..++...+.|..|-|.|..|+.++..
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~---~~lp~~~keLL~EIA~lE~eV~~LE~ 75 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSP---SSLPKKAKELLEEIALLEAEVAKLEQ 75 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcc---ccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667788888888888878888888888877665544333 34566788888888888888876543
No 137
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=34.11 E-value=98 Score=36.24 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceeec
Q 003251 339 MFLELALAAMDELVKMAQTDEPLWIRS 365 (836)
Q Consensus 339 ~l~~lA~~Am~El~~la~~~eplWi~~ 365 (836)
.|++ |..||.|+....+..---|.+.
T Consensus 398 kIle-ak~al~evtt~lrErl~RWqQI 423 (575)
T KOG4403|consen 398 KILE-AKSALSEVTTLLRERLHRWQQI 423 (575)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 7789999888877777778764
No 138
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.85 E-value=51 Score=37.32 Aligned_cols=72 Identities=24% Similarity=0.340 Sum_probs=46.7
Q ss_pred ccchhhhHHHHHHHHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhHH
Q 003251 181 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL 260 (836)
Q Consensus 181 WFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~ 260 (836)
||=-=|.+.| +.+....+.|+....|+.+.+.-++.--. ...+...|.++|+..|.+|+.||-++..+
T Consensus 54 wff~i~~re~-qlk~aa~~llq~kirk~~e~~eglr~i~e-----------s~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 54 WFFAIGRREK-QLKTAAGQLLQTKIRKITEKDEGLRKIRE-----------SVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred HHHHhhHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6654444443 34456677888888888877765554211 11234567778999999999998887776
Q ss_pred hhcc
Q 003251 261 AGKF 264 (836)
Q Consensus 261 ~~~~ 264 (836)
..|.
T Consensus 122 f~k~ 125 (401)
T PF06785_consen 122 FMKT 125 (401)
T ss_pred HHHh
Confidence 5553
No 139
>PF15058 Speriolin_N: Speriolin N terminus
Probab=32.70 E-value=58 Score=34.26 Aligned_cols=39 Identities=36% Similarity=0.518 Sum_probs=27.8
Q ss_pred hHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhH
Q 003251 199 SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCA 259 (836)
Q Consensus 199 ~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~ 259 (836)
.-++.++++|-.||.++|...+ |..||.+||.-|...+.
T Consensus 8 eGlrhqierLv~ENeeLKKlVr----------------------LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVR----------------------LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH----------------------HHHHHHHHHHHHHHhhc
Confidence 3456677777788888876553 77899988887666554
No 140
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.27 E-value=38 Score=32.13 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=23.0
Q ss_pred eeeeccchhhhHHHHHHHHhhhhHHHHHhHHHHHhhhhHHhhh
Q 003251 177 QVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAM 219 (836)
Q Consensus 177 QVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~ 219 (836)
+...||++.=- .+-.+.+++...+++++++++.+|..|++.+
T Consensus 16 ~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 16 QYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578865411 1112234455566777777777766666543
No 141
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.76 E-value=34 Score=31.80 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=26.4
Q ss_pred EEEeeccccChhHHHHhhhccccchhhhh
Q 003251 648 AATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
...|+.++.||..||++|.|.....+|.-
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~~~~w~p 32 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEAYPEWSP 32 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhhhhhhCc
Confidence 45688999999999999999999999985
No 142
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.62 E-value=3.6e+02 Score=23.65 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=26.9
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEee
Q 003251 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVIS 440 (836)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis 440 (836)
...|...+..+-+.|.|...|..-+|.+ ...+++.
T Consensus 4 ~~~i~a~~~~v~~~l~d~~~~~~~~~~~----~~~~~~~ 38 (141)
T cd07812 4 SIEIPAPPEAVWDLLSDPERWPEWSPGL----ERVEVLG 38 (141)
T ss_pred EEEeCCCHHHHHHHHhChhhhhhhCccc----ceEEEcC
Confidence 4556667999999999999999988874 4444554
No 143
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=31.58 E-value=1.2e+02 Score=33.78 Aligned_cols=45 Identities=27% Similarity=0.247 Sum_probs=31.1
Q ss_pred HHHHHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHH
Q 003251 191 TQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDR 256 (836)
Q Consensus 191 kk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r 256 (836)
|+++|.+...+-.|.+.|..+|.+||+.. ++|..|-.+||+=+..
T Consensus 243 RqKkRae~E~l~ge~~~Le~rN~~LK~qa---------------------~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGLEKRNEELKDQA---------------------SELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 34456677778888888888888888733 4566677777765543
No 144
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.38 E-value=29 Score=32.00 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.7
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 003251 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
..++-++.||..||++|.|-.+..+|..
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~~ 29 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWDP 29 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhcc
Confidence 3567789999999999999999999974
No 145
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=31.38 E-value=44 Score=30.90 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=23.6
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 003251 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
..++-++.||+.||++|.|.....+|.-
T Consensus 5 ~~~~~v~a~~e~V~~~l~d~~~~~~w~~ 32 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSDPENWPRWWP 32 (139)
T ss_dssp EEEEEESS-HHHHHHHHTTTTGGGGTST
T ss_pred EEEEEECCCHHHHHHHHhChhhhhhhhh
Confidence 4567789999999999999999999964
No 146
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=30.80 E-value=96 Score=34.11 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=13.2
Q ss_pred hhhhHhhhhhhHHHHHHHhHHhh
Q 003251 240 EQHLRIENARLKDELDRVCALAG 262 (836)
Q Consensus 240 ~q~L~~ENa~Lk~el~r~~~~~~ 262 (836)
.+.|+.+...|++|+..++.+..
T Consensus 231 n~~lr~~v~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 231 NEALRTQVEQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666665543
No 147
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=29.96 E-value=38 Score=31.27 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=24.3
Q ss_pred EEeeccccChhHHHHhhhccccchhhh
Q 003251 649 ATSVWLPVSPQRLFNFLRDERLRSEWD 675 (836)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd 675 (836)
..+.-+++||+.||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 356779999999999999999999996
No 148
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=29.71 E-value=26 Score=37.49 Aligned_cols=182 Identities=16% Similarity=0.156 Sum_probs=91.6
Q ss_pred cCCCCCceeccCCCCCCcEEEEE-ecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhhcCCCCcceE
Q 003251 609 ASTVHKWNKLNAGNVDEDVRVMT-RKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEM 686 (836)
Q Consensus 609 ~s~~~~W~~l~~~~~~~dVrv~~-r~~~~~~g~p~G~VL~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~ 686 (836)
+-.+.+|..+ -+ ..+++|.. |.- +.| | =...|- .-+. ++|..|+||+-|..-|.+||.+.--. ..+
T Consensus 25 ~~~~~~We~~-~~--k~~~~i~~q~~~--~~g-~-~~Yk~~---~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~--e~i 92 (219)
T KOG2761|consen 25 CDAGQGWELV-MD--KSTPSIWRQRRP--KTG-L-YEYKSR---TVFEDVTPEIVRDVQWDDEYRKKWDDMVIEL--ETI 92 (219)
T ss_pred cCcccchhhh-cc--cCCceEEEEccc--CCC-C-EEEEEE---EEEcCCCHHHHHHHHhhhHHHHHHHHHhhhh--eee
Confidence 5677899877 22 34677766 332 123 2 233333 3467 99999999999999999999843111 111
Q ss_pred eecccCCCCCceEEEEEec--cCCCCCCceEEEEccccCC--CCcEEEEeecchhhhhhhhcCCCCCCccccCCCcEEcC
Q 003251 687 AHIAKGQDHGNCVSLLRAS--AINANQSSMLILQETCTDA--AGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVP 762 (836)
Q Consensus 687 ~~ia~g~~~gn~vsllr~~--~~~~~~~~~liLQes~td~--sgs~vVyAPvD~~~m~~vm~G~ds~~v~LLPSGF~I~P 762 (836)
... ...||- |++-. -.-+-.+--+|++-.+.+. -.-+++-=-|+-+++ ---.+.--|-++=||+.|=
T Consensus 93 e~d---~~tg~~--vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~---P~~~~~vRv~~~~s~~~I~- 163 (219)
T KOG2761|consen 93 EED---PVTGTE--VVYWVKKFPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSY---PPLKKKVRVTVYRSGWLIR- 163 (219)
T ss_pred eec---CCCCce--EEEEEEeCCcccCCccEEEEEEEEecCCceEEEEEecccCCCc---CCcCCcEEEEEEEEEEEEE-
Confidence 111 112322 33311 0111112234444333322 122222221222211 0000112334556777776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-HhhhhhHHHHHHHHHhc
Q 003251 763 DGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLISCTVQKIKAALQ 833 (836)
Q Consensus 763 dg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li~~tv~~Ik~AL~ 833 (836)
-+... ....||-.+ ++.-.+|...|..+-|.= +...+-..|.|+-.|+.
T Consensus 164 --~~~~~----------------~~~~~~~~~----~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~ 213 (219)
T KOG2761|consen 164 --VESRS----------------GDEQGCACE----YLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALL 213 (219)
T ss_pred --ccccc----------------CCCCccEEE----EEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHH
Confidence 11111 012344333 344457888888776654 88888889999988875
No 149
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=29.01 E-value=29 Score=32.42 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=24.5
Q ss_pred EeeccccChhHHHHhhhccccchhhhh
Q 003251 650 TSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
.++-++.||++||+||.|.....+|..
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 567789999999999999999999984
No 150
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=28.80 E-value=35 Score=32.26 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=25.6
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 003251 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
.+++.++.||.+||+.|.|-.+..+|.-
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p 29 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIP 29 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCc
Confidence 3689999999999999999999999974
No 151
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=28.69 E-value=34 Score=32.77 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEeeccccChhHHHHhhhccccchhh
Q 003251 648 AATSVWLPVSPQRLFNFLRDERLRSEW 674 (836)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eW 674 (836)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 152
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.61 E-value=1.3e+02 Score=26.65 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=12.7
Q ss_pred hhhhhHhhhhhhHHHHHHH
Q 003251 239 EEQHLRIENARLKDELDRV 257 (836)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~ 257 (836)
+..+|+.||..|++|++..
T Consensus 48 e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 48 ENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5556777777777776653
No 153
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=28.09 E-value=41 Score=31.30 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.5
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 003251 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
..++-++.|++.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999985
No 154
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=28.04 E-value=57 Score=32.66 Aligned_cols=47 Identities=17% Similarity=0.081 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
..+|+.|.+.|+..++ . ....++|+.||++...|+.|-++.|.|.|+
T Consensus 5 ~~Lt~rqreVL~lr~~-G-----lTq~EIAe~LGiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 5 SFLTERQIEVLRLRER-G-----LTQQEIADILGTSRANVSSIEKRARENIEK 51 (141)
T ss_pred cCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5689999999988432 2 346689999999999999998765555553
No 155
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=26.23 E-value=46 Score=30.91 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=26.3
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 003251 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345678899999999999999999999984
No 156
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=26.21 E-value=39 Score=31.36 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.7
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 003251 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
..|+-++.||+.||++|.|..+-.+|.-
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~~ 30 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWFG 30 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhhC
Confidence 3577789999999999999999999963
No 157
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=25.76 E-value=1.2e+02 Score=31.08 Aligned_cols=47 Identities=26% Similarity=0.283 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhh
Q 003251 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRR 186 (836)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRR 186 (836)
...+|+++++++.+.-.++ |....+..||+++|+++.-|.+=.+--.
T Consensus 83 ~y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~~~~ 129 (164)
T PF12824_consen 83 KYHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAPAPK 129 (164)
T ss_pred cccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcCCCH
Confidence 3579999999999988777 6778899999999999877766654444
No 158
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.45 E-value=1.9e+02 Score=32.04 Aligned_cols=43 Identities=28% Similarity=0.340 Sum_probs=30.9
Q ss_pred HHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhh-hhhHhhhhhhHHHHHHHhHHh
Q 003251 201 LRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEE-QHLRIENARLKDELDRVCALA 261 (836)
Q Consensus 201 l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~-q~L~~ENa~Lk~el~r~~~~~ 261 (836)
.-.....+++||++|++++. +. +++......|++|.+|++.++
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~~------------------~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQELL------------------KKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456778899999998764 22 455555566899999988865
No 159
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.10 E-value=47 Score=29.44 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=23.7
Q ss_pred EeeccccChhHHHHhhhccccchhhhh
Q 003251 650 TSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
.++-++.||+.||++|.|..+..+|.-
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~~ 29 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWSP 29 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhCc
Confidence 466788999999999999999999963
No 160
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.07 E-value=1.5e+02 Score=35.30 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=11.5
Q ss_pred HhhhhHHHHHhHHHHHhhhhHHhh
Q 003251 195 RHENSLLRQENDKLRAENMSIRDA 218 (836)
Q Consensus 195 r~e~~~l~~en~~L~~en~~l~ea 218 (836)
|.+-..+.++|++|++||++|++.
T Consensus 72 r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 72 RKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555443
No 161
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.97 E-value=49 Score=31.27 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.4
Q ss_pred EeeccccChhHHHHhhhccccchhhh
Q 003251 650 TSVWLPVSPQRLFNFLRDERLRSEWD 675 (836)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd 675 (836)
.+.-+..||++||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 4 VSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEeCCHHHHHHHHhCccccceeC
Confidence 45667899999999999999999997
No 162
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=24.79 E-value=1.7e+02 Score=29.35 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=30.2
Q ss_pred eEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCceEEEEEEecCCc
Q 003251 434 ATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (836)
Q Consensus 434 ~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~waVvDvSld~~ 494 (836)
..++|++.-..+..+|.--.+.+++....- .|..=.|-|+. .+|.|-|+||.++++
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~V~t~i~~~~g-~~i~v~y~l~~----~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 85 QSVEVLSEPPNGRKGGNRAIVRTEIISKDG-QPIPVDYRLRK----KDGKWKIYDVIIEGV 140 (170)
T ss_dssp -EEEE------S-TT-SEEEEEEEEEET-T-EEEEEEEEEEE----ETTEEEEEEEEETTE
T ss_pred CeEEEEeccCCCCCCCCEEEEEEEEEcCCC-CcEEEEEEEEE----cCCCeEEEEEEEcce
Confidence 456666544444334555566777766654 33333344443 789999999999976
No 163
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=24.76 E-value=27 Score=26.68 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhh
Q 003251 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (836)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRa 187 (836)
.+++.+...++..|... ..-.++|..+|++...|+.|.+.-+.
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~~~ 52 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRALK 52 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46778888888877433 24567899999999999888754433
No 164
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=24.23 E-value=81 Score=37.79 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=18.0
Q ss_pred hHHHHHhHHHHHhhhhHHhhhc
Q 003251 199 SLLRQENDKLRAENMSIRDAMR 220 (836)
Q Consensus 199 ~~l~~en~~L~~en~~l~ea~~ 220 (836)
+.+-+||+.|++||..||+.+.
T Consensus 312 q~ll~Ene~Lk~ENatLk~qL~ 333 (655)
T KOG4343|consen 312 QALLSENEQLKKENATLKRQLD 333 (655)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 4567889999999999998775
No 165
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=24.18 E-value=51 Score=26.33 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccc
Q 003251 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (836)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQ 183 (836)
.+++.|...|...|.+. ..-.++|+.+|++...|+.+..
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~lg~s~~~V~~~~~ 42 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERLGISRSTVRRILK 42 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHHTSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHHCCcHHHHHHHHH
Confidence 47888999999998333 3467899999999988776543
No 166
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.13 E-value=1.6e+02 Score=35.11 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH
Q 003251 184 NRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (836)
Q Consensus 184 NRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (836)
.+..+.+-...+.....+++++++|+.|...+..... +.....+.|..||.+|+++++
T Consensus 64 dkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~~--------------dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 64 DKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRG--------------DDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------------hHHHHHHHHHHHHHHHHHHHH
Confidence 3344445445555666677777777766553332221 111223367788999998884
No 167
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=23.79 E-value=2.2e+02 Score=25.14 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=9.9
Q ss_pred HHHHhHHHHHhhhhHHh
Q 003251 201 LRQENDKLRAENMSIRD 217 (836)
Q Consensus 201 l~~en~~L~~en~~l~e 217 (836)
|-...+.|+.||..+++
T Consensus 12 Li~~~~~L~~EN~~Lr~ 28 (65)
T TIGR02449 12 LLEYLERLKSENRLLRA 28 (65)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455566666666665
No 168
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=23.56 E-value=83 Score=26.44 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHhhhcCC--CCCHHHHHHHHHhhccccee
Q 003251 141 HTPQQIQELESLFKECP--HPDEKQRLELSKRLCLETRQ 177 (836)
Q Consensus 141 fT~~Ql~~LE~~F~~~~--~Ps~~~R~eLA~~LgLs~rQ 177 (836)
+|+.|.+.|...|+..- +|-...-.+||++||+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 57899999999998764 47777788999999998754
No 169
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=23.31 E-value=35 Score=37.43 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=19.1
Q ss_pred hhhhhHhhhhhhHHHHHHHhHHhhcc
Q 003251 239 EEQHLRIENARLKDELDRVCALAGKF 264 (836)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~~~~~~~ 264 (836)
....|..||+.|+.+++++.....++
T Consensus 223 r~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 223 RVAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888888888888887766554
No 170
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.08 E-value=1e+02 Score=29.29 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=25.1
Q ss_pred ccchhhhHHHHHHHHhhhhHHHHHhHHHHHhhhhHHh
Q 003251 181 WFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRD 217 (836)
Q Consensus 181 WFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~e 217 (836)
|+..+..+.+....++++..++++|+.|+.|-+.++.
T Consensus 26 ~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 26 ILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555555556666677777777777777777777664
No 171
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=22.89 E-value=1.4e+02 Score=28.36 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=27.1
Q ss_pred EEEeeccccChhHHHHhhhccccchhhhhhcC
Q 003251 648 AATSVWLPVSPQRLFNFLRDERLRSEWDILSN 679 (836)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~ 679 (836)
...|.-++.||++||+++.|.....+|.-...
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~ 35 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWEK 35 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchhh
Confidence 34677789999999999999999999986443
No 172
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=21.29 E-value=4.2e+02 Score=24.42 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=55.7
Q ss_pred EechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceecCceEE
Q 003251 406 IINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWA 485 (836)
Q Consensus 406 ~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~~g~wa 485 (836)
...+..+-+++.|.+.|.+.||.+ .-++||..... -|.+++.+.-...+ ..|+.|...+-.+.
T Consensus 2 ~ap~~~V~~~i~D~e~~~~~~p~~----~~v~vl~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--- 64 (130)
T PF03364_consen 2 NAPPEEVWSVITDYENYPRFFPPV----KEVRVLERDGD--------GMRARWEVKFGGIK--RSWTSRVTEDPPER--- 64 (130)
T ss_dssp SS-HHHHHHHHTTGGGHHHHCTTE----EEEEEEEEECC--------EEEEEEEECTTTTC--EEEEEEEEEECTTT---
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCC----ceEEEEEeCCC--------eEEEEEEEecCCEE--EEEEEEEEEEEeee---
Confidence 346778899999999999999995 55667764431 24445555544443 33444444443333
Q ss_pred EEEEecCCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccc
Q 003251 486 VVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDES 536 (836)
Q Consensus 486 VvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~ 536 (836)
|.+....+... .+...|+ +++.. +|++.+++.-.++++..
T Consensus 65 ~~~~~~~g~~~-----~~~g~W~------~~~~~~~~~g~~~~v~~~~~~~~~ 106 (130)
T PF03364_consen 65 IRFEQISGPFK-----SFEGSWR------FEPLGGNEGGTRTRVTYDYEVDPP 106 (130)
T ss_dssp EEEESSETTEE-----EEEEEEE------EEEETTECCEEEEEEEEEEEEETS
T ss_pred eeeeecCCCch-----hcEEEEE------EEECCCCcCCCEEEEEEEEEEecC
Confidence 33332222110 1122222 22333 35777777777777544
No 173
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=21.10 E-value=2.4e+02 Score=30.29 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=32.0
Q ss_pred HHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHhHHh
Q 003251 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALA 261 (836)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~~~~ 261 (836)
+..-..+.+...+++|.|-.++.+ -+-..|+.||++||.||+|+..-.
T Consensus 92 q~~v~~QQ~~~f~kiRsel~S~e~--------------------sEF~~lr~e~EklkndlEk~ks~l 139 (220)
T KOG3156|consen 92 QEKVSYQQKVDFAKIRSELVSIER--------------------SEFANLRAENEKLKNDLEKLKSSL 139 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777888877555443 123358889999999999887544
No 174
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=21.00 E-value=24 Score=42.49 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhh-------cccceeeeeccchhhhHHHHHH
Q 003251 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRL-------CLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L-------gLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.||+.-+.|-..-.+.-+..|.++++++.....+--+++ ..+.+-|++||.|||.++|+.+
T Consensus 691 pk~~~~k~f~~~~~ev~~~w~~k~~s~s~~~v~eYkee~~~~~~~e~~~~kn~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 691 PKKTIIKFFQNQRYEVKHHWKLKTRSGSWVDVAEYKEEELLMPYEEKFESKNVQFWFKVRREEEKRLK 758 (769)
T ss_pred cHHHHHHhhhcceeecchhheecccCchhHHHHHhhHHhhcchhhhhhhhcchHHHHHHHHHHHhhhh
No 175
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=20.85 E-value=1.9e+02 Score=33.91 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=13.7
Q ss_pred cceeecCCcceEeecCCCccEEEEE
Q 003251 504 VNCRRLPSGCVVQDMPNGYSKVTWV 528 (836)
Q Consensus 504 ~~~~r~PSGclIq~~~nG~skVtwV 528 (836)
+|+|-.=|+=..+.+|-|+ +||=|
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl 347 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSL 347 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeE
Confidence 5666655555556666555 55544
No 176
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.05 E-value=76 Score=29.27 Aligned_cols=27 Identities=22% Similarity=0.494 Sum_probs=24.0
Q ss_pred EeeccccChhHHHHhhhccccchhhhh
Q 003251 650 TSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 650 tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
.+.-++.||++||++|.|..+..+|.-
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~~ 30 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWNP 30 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccCh
Confidence 466688999999999999999999973
Done!