Query 003251
Match_columns 836
No_of_seqs 412 out of 1738
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 18:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 1.4E-19 4.9E-24 185.8 18.9 201 337-568 21-229 (231)
2 3a01_A Homeodomain-containing 99.7 1E-17 3.4E-22 151.2 5.3 77 130-206 13-89 (93)
3 2dmt_A Homeobox protein BARH-l 99.7 2.1E-17 7.1E-22 144.9 5.0 64 130-193 13-76 (80)
4 2kt0_A Nanog, homeobox protein 99.7 1.5E-17 5E-22 146.8 3.8 64 130-193 18-81 (84)
5 2da3_A Alpha-fetoprotein enhan 99.7 2E-17 6.9E-22 144.4 4.1 63 131-193 14-76 (80)
6 1nk2_P Homeobox protein VND; h 99.7 7.1E-17 2.4E-21 140.5 5.9 66 131-196 6-71 (77)
7 2dmq_A LIM/homeobox protein LH 99.6 6E-17 2E-21 141.6 4.9 66 132-197 5-70 (80)
8 2cue_A Paired box protein PAX6 99.6 9.2E-17 3.1E-21 140.7 6.1 65 132-196 5-69 (80)
9 1wh5_A ZF-HD homeobox family p 99.6 3.9E-17 1.3E-21 143.6 3.4 61 131-191 14-78 (80)
10 2dms_A Homeobox protein OTX2; 99.6 5.9E-17 2E-21 141.9 3.4 64 132-195 5-68 (80)
11 2dmu_A Homeobox protein goosec 99.6 9E-17 3.1E-21 137.2 4.1 62 132-193 5-66 (70)
12 1puf_A HOX-1.7, homeobox prote 99.6 2.2E-16 7.4E-21 137.4 6.5 64 132-195 11-74 (77)
13 1fjl_A Paired protein; DNA-bin 99.6 1.3E-16 4.4E-21 140.1 4.9 64 131-194 15-78 (81)
14 2e1o_A Homeobox protein PRH; D 99.6 1.5E-16 5.3E-21 135.8 5.0 61 133-193 6-66 (70)
15 2h1k_A IPF-1, pancreatic and d 99.6 1E-16 3.5E-21 134.2 3.8 60 133-192 2-61 (63)
16 1wh7_A ZF-HD homeobox family p 99.6 7E-17 2.4E-21 142.1 2.9 60 131-191 14-78 (80)
17 2cra_A Homeobox protein HOX-B1 99.6 8.8E-17 3E-21 137.3 3.1 62 132-193 5-66 (70)
18 2vi6_A Homeobox protein nanog; 99.6 4.7E-17 1.6E-21 135.8 1.3 60 133-192 2-61 (62)
19 2da2_A Alpha-fetoprotein enhan 99.6 7E-17 2.4E-21 137.7 2.2 63 131-193 4-66 (70)
20 1zq3_P PRD-4, homeotic bicoid 99.6 1.7E-16 6E-21 134.8 4.4 63 134-196 2-64 (68)
21 2hdd_A Protein (engrailed home 99.6 1.4E-16 4.8E-21 132.4 3.1 58 134-191 3-60 (61)
22 1ig7_A Homeotic protein MSX-1; 99.6 2.4E-16 8.4E-21 129.5 4.2 57 135-191 1-57 (58)
23 2djn_A Homeobox protein DLX-5; 99.6 1.4E-16 4.9E-21 136.0 2.8 61 132-192 5-65 (70)
24 2da1_A Alpha-fetoprotein enhan 99.6 1.9E-16 6.6E-21 135.0 3.6 62 132-193 5-66 (70)
25 1ahd_P Antennapedia protein mu 99.6 1.7E-16 5.8E-21 135.0 3.1 62 134-195 2-63 (68)
26 1yz8_P Pituitary homeobox 2; D 99.6 1.3E-16 4.4E-21 135.6 2.1 63 133-195 2-64 (68)
27 1ftt_A TTF-1 HD, thyroid trans 99.6 2.5E-16 8.4E-21 133.9 3.0 62 134-195 2-63 (68)
28 1b8i_A Ultrabithorax, protein 99.6 2.1E-16 7.2E-21 138.9 2.4 62 132-193 18-79 (81)
29 1jgg_A Segmentation protein EV 99.6 3.4E-16 1.1E-20 129.8 3.4 58 135-192 2-59 (60)
30 2da4_A Hypothetical protein DK 99.6 2.9E-16 9.8E-21 137.5 3.1 62 132-193 6-71 (80)
31 1bw5_A ISL-1HD, insulin gene e 99.6 1.7E-16 5.9E-21 133.9 1.5 60 133-192 2-61 (66)
32 2l7z_A Homeobox protein HOX-A1 99.6 4.5E-16 1.6E-20 134.1 4.0 62 132-193 5-66 (73)
33 3nar_A ZHX1, zinc fingers and 99.6 3.9E-16 1.3E-20 141.4 3.0 64 132-195 23-86 (96)
34 2r5y_A Homeotic protein sex co 99.6 3.3E-16 1.1E-20 139.6 2.3 61 133-193 27-87 (88)
35 3rkq_A Homeobox protein NKX-2. 99.6 5.4E-16 1.9E-20 126.9 3.4 57 134-190 2-58 (58)
36 2m0c_A Homeobox protein arista 99.6 4.2E-16 1.4E-20 134.3 2.6 63 131-193 6-68 (75)
37 2da5_A Zinc fingers and homeob 99.6 4.8E-16 1.6E-20 134.7 2.9 60 136-195 9-68 (75)
38 2hi3_A Homeodomain-only protei 99.6 9.5E-16 3.3E-20 132.0 4.5 59 135-193 3-62 (73)
39 1akh_A Protein (mating-type pr 99.6 4.7E-16 1.6E-20 129.1 2.4 59 132-190 3-61 (61)
40 1uhs_A HOP, homeodomain only p 99.6 9.8E-16 3.4E-20 131.5 4.5 59 135-193 2-61 (72)
41 3a02_A Homeobox protein arista 99.6 5.4E-16 1.8E-20 128.5 2.5 57 137-193 2-58 (60)
42 3a03_A T-cell leukemia homeobo 99.6 8.3E-16 2.9E-20 125.9 3.5 54 139-192 2-55 (56)
43 2k40_A Homeobox expressed in E 99.6 4.7E-16 1.6E-20 131.6 2.0 60 135-194 2-61 (67)
44 1b72_A Protein (homeobox prote 99.6 8.6E-16 2.9E-20 139.3 3.8 63 132-194 32-94 (97)
45 2cuf_A FLJ21616 protein; homeo 99.6 1.5E-15 5.1E-20 137.3 5.0 65 131-195 4-83 (95)
46 2ecc_A Homeobox and leucine zi 99.5 1.3E-15 4.4E-20 132.7 3.3 59 137-195 6-64 (76)
47 1x2n_A Homeobox protein pknox1 99.5 1.7E-15 5.7E-20 130.3 3.8 63 132-194 5-70 (73)
48 2ly9_A Zinc fingers and homeob 99.5 1.5E-15 5.3E-20 130.8 2.6 61 134-194 6-66 (74)
49 2dn0_A Zinc fingers and homeob 99.5 1.1E-15 3.8E-20 132.6 1.5 59 135-193 9-67 (76)
50 2ecb_A Zinc fingers and homeob 99.5 1.2E-15 4E-20 136.9 1.5 55 139-193 16-70 (89)
51 1puf_B PRE-B-cell leukemia tra 99.5 3.1E-15 1.1E-19 128.6 3.6 61 135-195 2-65 (73)
52 2dmn_A Homeobox protein TGIF2L 99.5 4E-15 1.4E-19 131.5 4.3 64 132-195 5-71 (83)
53 1e3o_C Octamer-binding transcr 99.5 1.8E-15 6.1E-20 149.1 1.7 62 131-192 98-159 (160)
54 1b72_B Protein (PBX1); homeodo 99.5 4.8E-15 1.6E-19 131.5 4.1 61 135-195 2-65 (87)
55 2xsd_C POU domain, class 3, tr 99.5 1.8E-15 6.1E-20 149.9 1.0 65 131-195 96-160 (164)
56 2dmp_A Zinc fingers and homeob 99.5 5.2E-15 1.8E-19 132.5 3.3 58 137-194 16-73 (89)
57 2da6_A Hepatocyte nuclear fact 99.5 1.3E-14 4.3E-19 133.0 5.7 65 131-195 3-88 (102)
58 1au7_A Protein PIT-1, GHF-1; c 99.5 2.9E-15 9.8E-20 145.7 1.3 62 131-192 84-145 (146)
59 1k61_A Mating-type protein alp 99.5 6.4E-15 2.2E-19 121.9 3.1 55 137-191 1-58 (60)
60 1du6_A PBX1, homeobox protein 99.5 3.9E-15 1.3E-19 124.8 1.5 58 134-191 3-63 (64)
61 2cqx_A LAG1 longevity assuranc 99.5 3.4E-15 1.1E-19 128.8 1.1 57 135-191 9-66 (72)
62 1wi3_A DNA-binding protein SAT 99.5 1.5E-14 5E-19 122.7 4.0 60 131-190 4-64 (71)
63 1mnm_C Protein (MAT alpha-2 tr 99.5 1.2E-14 4.1E-19 129.2 3.6 58 133-190 26-86 (87)
64 1le8_B Mating-type protein alp 99.5 5.9E-15 2E-19 130.3 1.6 60 134-193 2-64 (83)
65 3d1n_I POU domain, class 6, tr 99.5 1.5E-14 5E-19 141.2 3.7 60 132-191 91-150 (151)
66 2l9r_A Homeobox protein NKX-3. 99.5 4E-15 1.4E-19 127.5 -0.4 57 139-195 9-65 (69)
67 3nau_A Zinc fingers and homeob 99.4 2.1E-14 7E-19 121.6 3.1 53 141-193 11-63 (66)
68 1lfb_A Liver transcription fac 99.4 8.3E-15 2.9E-19 133.8 0.7 64 131-194 6-90 (99)
69 1x2m_A LAG1 longevity assuranc 99.4 1.3E-14 4.6E-19 122.4 0.7 49 143-191 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.4 3.8E-14 1.3E-18 139.0 3.4 61 132-192 94-154 (155)
71 2e19_A Transcription factor 8; 99.4 3.6E-14 1.2E-18 119.7 1.7 52 140-191 9-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.4 6E-14 2.1E-18 138.4 1.6 63 131-193 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.3 2E-13 6.8E-18 116.0 1.7 58 140-197 4-64 (67)
74 1ic8_A Hepatocyte nuclear fact 99.2 7.9E-13 2.7E-17 134.1 0.4 62 130-191 111-193 (194)
75 1em2_A MLN64 protein; beta bar 99.2 2.1E-10 7E-15 117.6 17.4 197 337-568 20-226 (229)
76 3p0l_A Steroidogenic acute reg 99.2 1.9E-10 6.5E-15 117.4 15.7 193 340-566 12-213 (221)
77 2pso_A STAR-related lipid tran 99.2 1.3E-10 4.3E-15 120.9 13.8 191 343-565 33-225 (237)
78 2lk2_A Homeobox protein TGIF1; 99.1 2.6E-11 8.7E-16 108.6 3.6 59 139-197 10-71 (89)
79 2h8r_A Hepatocyte nuclear fact 99.1 3.2E-11 1.1E-15 124.0 3.0 60 130-189 138-218 (221)
80 2da7_A Zinc finger homeobox pr 99.0 4.9E-11 1.7E-15 101.8 2.3 46 143-188 14-59 (71)
81 1ln1_A PC-TP, phosphatidylchol 99.0 4.7E-09 1.6E-13 105.8 14.9 152 397-568 52-210 (214)
82 1mh3_A Maltose binding-A1 home 98.9 1.1E-10 3.9E-15 127.8 0.8 56 135-190 366-421 (421)
83 1jss_A Stard4, cholesterol-reg 98.9 1.2E-08 4.1E-13 104.5 14.7 190 340-566 26-222 (224)
84 3fo5_A Thioesterase, adipose a 98.7 5.1E-08 1.8E-12 102.9 12.1 128 400-541 91-222 (258)
85 3qsz_A STAR-related lipid tran 98.6 6.2E-07 2.1E-11 88.8 14.6 152 398-567 28-179 (189)
86 2nzz_A Penetratin conjugated G 98.4 2.1E-08 7.1E-13 75.7 -1.8 21 176-196 1-21 (37)
87 2e3n_A Lipid-transfer protein 98.3 3.2E-06 1.1E-10 88.0 12.8 200 340-568 24-247 (255)
88 2r55_A STAR-related lipid tran 97.4 0.0076 2.6E-07 61.3 18.3 198 587-833 19-227 (231)
89 3qsz_A STAR-related lipid tran 96.9 0.019 6.6E-07 56.3 15.5 171 613-833 3-178 (189)
90 1jss_A Stard4, cholesterol-reg 96.5 0.042 1.4E-06 55.8 14.7 191 592-833 26-222 (224)
91 3p0l_A Steroidogenic acute reg 96.3 0.13 4.5E-06 51.9 17.1 194 590-833 10-213 (221)
92 1ln1_A PC-TP, phosphatidylchol 96.1 0.1 3.6E-06 51.9 15.3 172 611-833 26-208 (214)
93 1em2_A MLN64 protein; beta bar 96.1 0.16 5.3E-06 51.6 16.5 196 590-833 21-224 (229)
94 2pso_A STAR-related lipid tran 96.0 0.12 4.1E-06 53.4 15.3 175 611-834 48-227 (237)
95 2d4r_A Hypothetical protein TT 95.5 0.13 4.5E-06 46.3 11.9 140 401-568 6-145 (147)
96 3fo5_A Thioesterase, adipose a 94.0 0.83 2.8E-05 48.0 14.9 181 554-764 10-202 (258)
97 3tl1_A WHIE ORF VI, polyketide 92.3 2.1 7.1E-05 41.4 13.6 142 400-570 6-149 (159)
98 3tfz_A Cyclase; helix-GRIP, BE 91.5 2.2 7.7E-05 41.0 12.9 145 400-570 8-162 (172)
99 1t17_A Conserved hypothetical 90.7 1 3.5E-05 41.9 9.4 141 400-568 5-145 (148)
100 3tvq_A Multifunctional cyclase 90.7 4 0.00014 39.8 13.9 145 400-571 6-150 (169)
101 2e3n_A Lipid-transfer protein 90.4 3 0.0001 42.8 13.3 198 592-832 28-244 (255)
102 2jn6_A Protein CGL2762, transp 84.3 0.32 1.1E-05 42.7 1.4 43 139-184 4-46 (97)
103 2ys9_A Homeobox and leucine zi 84.2 0.29 9.8E-06 41.9 1.0 40 145-184 17-56 (70)
104 3p9v_A Uncharacterized protein 83.5 11 0.00039 35.8 12.1 140 400-565 10-149 (161)
105 2pcs_A Conserved protein; stru 76.7 47 0.0016 30.7 14.6 118 402-546 8-127 (162)
106 2jee_A YIIU; FTSZ, septum, coi 76.3 3.3 0.00011 36.3 5.0 52 198-263 22-77 (81)
107 2j5u_A MREC protein; bacterial 67.5 2 6.7E-05 45.1 1.8 16 239-254 44-59 (255)
108 1ci6_A Transcription factor AT 64.4 12 0.0004 31.1 5.6 41 194-255 21-61 (63)
109 2wt7_B Transcription factor MA 59.1 16 0.00055 32.7 5.8 67 172-259 17-83 (90)
110 1hjb_A Ccaat/enhancer binding 56.3 17 0.00057 32.3 5.5 19 199-217 39-57 (87)
111 1t2k_D Cyclic-AMP-dependent tr 56.1 25 0.00087 28.7 6.2 40 194-254 20-59 (61)
112 1gu4_A CAAT/enhancer binding p 48.7 25 0.00084 30.6 5.2 16 201-216 41-56 (78)
113 3ra3_B P2F; coiled coil domain 43.4 13 0.00044 25.6 2.0 18 241-258 3-20 (28)
114 3p51_A Uncharacterized protein 42.2 99 0.0034 29.5 9.0 112 401-535 6-118 (160)
115 2qpv_A Uncharacterized protein 40.9 17 0.00057 35.1 3.3 30 647-676 28-57 (156)
116 1jnm_A Proto-oncogene C-JUN; B 39.7 36 0.0012 27.9 4.7 24 194-217 20-43 (62)
117 3a5t_A Transcription factor MA 37.8 5.5 0.00019 36.7 -0.6 66 172-258 27-92 (107)
118 1l8d_A DNA double-strand break 37.3 26 0.00087 31.5 3.8 12 221-232 47-58 (112)
119 1gd2_E Transcription factor PA 37.0 59 0.002 27.6 5.7 13 245-257 50-62 (70)
120 2d4r_A Hypothetical protein TT 35.7 15 0.00051 32.4 1.9 28 649-676 5-32 (147)
121 2glo_A Brinker CG9653-PA; prot 35.1 16 0.00054 29.0 1.7 45 138-183 3-47 (59)
122 2elh_A CG11849-PA, LD40883P; s 33.8 18 0.00061 31.1 2.0 43 135-182 17-59 (87)
123 1hlv_A CENP-B, major centromer 33.7 23 0.0008 32.0 2.9 49 137-188 4-52 (131)
124 2ns9_A Hypothetical protein AP 33.4 2.7E+02 0.0091 25.0 12.1 28 402-429 18-45 (157)
125 2pcs_A Conserved protein; stru 31.3 18 0.0006 33.7 1.7 28 648-675 5-32 (162)
126 3ggn_A Uncharacterized protein 30.8 3.2E+02 0.011 25.1 12.7 116 401-545 8-124 (155)
127 2ns9_A Hypothetical protein AP 30.7 20 0.00069 32.8 2.0 29 647-675 14-42 (157)
128 3hug_A RNA polymerase sigma fa 29.4 30 0.001 29.6 2.7 49 140-193 37-85 (92)
129 2wt7_A Proto-oncogene protein 28.7 1.3E+02 0.0045 24.6 6.4 26 194-219 21-46 (63)
130 3he5_B Synzip2; heterodimeric 28.4 1.2E+02 0.0042 23.4 5.5 22 239-260 25-46 (52)
131 1jko_C HIN recombinase, DNA-in 28.3 16 0.00054 27.1 0.6 43 140-187 5-47 (52)
132 3ggn_A Uncharacterized protein 27.4 32 0.0011 32.2 2.7 30 647-676 5-34 (155)
133 2rn7_A IS629 ORFA; helix, all 26.6 1 3.6E-05 40.1 -7.4 44 139-182 5-51 (108)
134 1t17_A Conserved hypothetical 26.4 29 0.00099 31.9 2.2 28 649-676 5-32 (148)
135 3s9g_A Protein hexim1; cyclin 26.3 56 0.0019 29.6 3.9 49 191-253 32-87 (104)
136 2leq_A Uncharacterized protein 26.2 38 0.0013 30.3 2.9 27 648-674 7-33 (146)
137 3m48_A General control protein 25.5 53 0.0018 24.1 2.9 22 240-261 9-30 (33)
138 3q6a_A Uncharacterized protein 24.3 41 0.0014 30.4 2.8 27 649-675 4-30 (135)
139 3m91_A Proteasome-associated A 23.7 1.3E+02 0.0044 24.1 5.1 38 200-258 13-50 (51)
140 3m9b_A Proteasome-associated A 23.3 63 0.0021 33.9 4.2 19 241-259 78-96 (251)
141 2rgt_A Fusion of LIM/homeobox 23.2 3.1 0.00011 40.3 -5.3 31 132-162 134-164 (169)
142 1x53_A Activator of 90 kDa hea 23.1 43 0.0015 30.7 2.7 28 648-675 13-40 (145)
143 1s7o_A Hypothetical UPF0122 pr 22.8 80 0.0027 28.6 4.4 49 140-193 22-70 (113)
144 3mq7_A Bone marrow stromal ant 22.4 41 0.0014 31.3 2.3 49 172-220 40-88 (121)
145 2yy0_A C-MYC-binding protein; 22.2 1E+02 0.0034 24.8 4.3 16 240-255 21-36 (53)
146 1uii_A Geminin; human, DNA rep 21.7 1.4E+02 0.0047 26.3 5.4 21 242-262 57-77 (83)
147 3tfz_A Cyclase; helix-GRIP, BE 21.5 51 0.0017 31.3 2.9 30 647-676 6-35 (172)
148 3mzy_A RNA polymerase sigma-H 21.1 57 0.0019 29.6 3.1 48 140-193 109-156 (164)
149 1hjb_A Ccaat/enhancer binding 20.5 2.4E+02 0.0082 24.9 6.8 17 242-258 47-63 (87)
150 1deb_A APC protein, adenomatou 20.2 67 0.0023 25.7 2.8 26 239-264 11-36 (54)
151 1xsv_A Hypothetical UPF0122 pr 20.1 98 0.0033 27.9 4.4 50 140-194 25-74 (113)
152 1gd2_E Transcription factor PA 20.1 1.4E+02 0.0046 25.4 4.9 18 239-256 51-68 (70)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=185.82 Aligned_cols=201 Identities=16% Similarity=0.205 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHh
Q 003251 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL 416 (836)
Q Consensus 337 ~~~l~~lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~l 416 (836)
++.++++|++||+||+++++.. ..|....+.. +.+.|.+.. .+....+.|..++|.+.+.+|++.|
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~~---------gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l 86 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRDT-AGWKICREGN---------GVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCV 86 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-SSCEEEECCS---------SEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCEEEEeCC---------CEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHH
Confidence 7899999999999999999754 7898754321 233342221 1223578899999999999999999
Q ss_pred cC-----hhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeee-eecccccccccceeeEEeeeceecCceEEEEEEe
Q 003251 417 MD-----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHA-ELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVS 490 (836)
Q Consensus 417 mD-----~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~a-El~v~SPLvp~Re~~flRyckq~~~g~waVvDvS 490 (836)
|+ +.+|-..|. .++.++.|+. .-.++|. ....++++|++|||.++||+++.++|.|+|+.+|
T Consensus 87 ~~~d~~~r~~Wd~~~~----~~~vle~i~~--------~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~S 154 (231)
T 2r55_A 87 KPAVGGLRVKWDENVT----GFEIIQSITD--------TLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATH 154 (231)
T ss_dssp CC--CCSHHHHCTTCS----EEEEEEECSS--------SEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred HhhCcchhhhhccccc----eeEEEEEcCC--------CEEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEe
Confidence 77 889987743 5788887752 1234442 2234567999999999999999999999999999
Q ss_pred cCCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHHHH
Q 003251 491 IDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL 568 (836)
Q Consensus 491 ld~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqcerl 568 (836)
++.-. .|..+.++|++.+++||+||+++ +|.|+|||+.|++..-+ +| +.++++.+..+..+|++.|+++|+.+
T Consensus 155 v~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 155 VEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp CCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 98432 22223589999999999999998 78999999999998876 55 67899999999999999999999853
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=1e-17 Score=151.17 Aligned_cols=77 Identities=32% Similarity=0.428 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhhhhHHHHHhH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQEND 206 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~ 206 (836)
..+++||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++....+....++.+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~~ 89 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANR 89 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC----------
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999887777666665554
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.1e-17 Score=144.87 Aligned_cols=64 Identities=28% Similarity=0.380 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
..+++||.|++||.+|+..||..|+.++||+..+|.+||.+|+|+++||++||||||+|+||..
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3456678899999999999999999999999999999999999999999999999999999743
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-17 Score=146.79 Aligned_cols=64 Identities=30% Similarity=0.302 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
...++||.|+.||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+||++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999999999999999999999999754
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.67 E-value=2e-17 Score=144.37 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
..++||.|++||.+|+..||..|..++||+..+|.+||.+|+|+++||++||||||+|+||++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 356678899999999999999999999999999999999999999999999999999999754
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.65 E-value=7.1e-17 Score=140.46 Aligned_cols=66 Identities=30% Similarity=0.385 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHh
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 196 (836)
.++++|.|++||..|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+.+...
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 456677889999999999999999999999999999999999999999999999999999876553
No 7
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6e-17 Score=141.61 Aligned_cols=66 Identities=27% Similarity=0.490 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhh
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 197 (836)
.++||.|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+||+..+.+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999999999999999999999999999999998765543
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=9.2e-17 Score=140.74 Aligned_cols=65 Identities=25% Similarity=0.442 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHh
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 196 (836)
.+++|.|++||.+|+..||..|..++||+..+|.+||.+|+|+++||++||||||+|+|++.+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 35677889999999999999999999999999999999999999999999999999999876543
No 9
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.65 E-value=3.9e-17 Score=143.58 Aligned_cols=61 Identities=15% Similarity=0.278 Sum_probs=57.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc----CCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKE----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~----~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
.+++||+|+.||.+|+..||..|+. ++||+..+|++||.+|+|+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3567788999999999999999999 999999999999999999999999999999999874
No 10
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=5.9e-17 Score=141.87 Aligned_cols=64 Identities=28% Similarity=0.496 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
.++||+|++||.+|+..||..|+.++||+..+|.+||.+|+|+++||++||||||+|+|++++.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 4567889999999999999999999999999999999999999999999999999999986543
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9e-17 Score=137.19 Aligned_cols=62 Identities=29% Similarity=0.556 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.+.||.|++||.+|+..||..|+.++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34577889999999999999999999999999999999999999999999999999999754
No 12
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.63 E-value=2.2e-16 Score=137.42 Aligned_cols=64 Identities=36% Similarity=0.432 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
++.+++|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+..+.
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788999999999999999999999999999999999999999999999999999987654
No 13
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.63 E-value=1.3e-16 Score=140.06 Aligned_cols=64 Identities=30% Similarity=0.540 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
.++++|.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4566788999999999999999999999999999999999999999999999999999998653
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.5e-16 Score=135.83 Aligned_cols=61 Identities=36% Similarity=0.425 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
+.+++|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4567789999999999999999999999999999999999999999999999999999754
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.63 E-value=1e-16 Score=134.23 Aligned_cols=60 Identities=35% Similarity=0.467 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHH
Q 003251 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 192 (836)
++||.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 357788999999999999999999999999999999999999999999999999999975
No 16
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=7e-17 Score=142.09 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc-----CCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKE-----CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~-----~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
..++||.|+.||.+|+..|| .|.+ ++||+..+|++||.+|+|+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678889999999999999 7999 999999999999999999999999999999999874
No 17
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=8.8e-17 Score=137.33 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.++||+|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45677889999999999999999999999999999999999999999999999999999743
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.62 E-value=4.7e-17 Score=135.76 Aligned_cols=60 Identities=32% Similarity=0.368 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHH
Q 003251 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 192 (836)
+++|.|+.||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457788999999999999999999999999999999999999999999999999999974
No 19
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=7e-17 Score=137.74 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
..++|++|++||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+||+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 345678889999999999999999999999999999999999999999999999999999743
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=1.7e-16 Score=134.85 Aligned_cols=63 Identities=37% Similarity=0.520 Sum_probs=59.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHh
Q 003251 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERH 196 (836)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~ 196 (836)
+||.|+.||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 467889999999999999999999999999999999999999999999999999999877654
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.61 E-value=1.4e-16 Score=132.44 Aligned_cols=58 Identities=31% Similarity=0.550 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
+||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5778899999999999999999999999999999999999999999999999999986
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=2.4e-16 Score=129.51 Aligned_cols=57 Identities=37% Similarity=0.511 Sum_probs=54.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999986
No 23
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-16 Score=136.02 Aligned_cols=61 Identities=30% Similarity=0.439 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 192 (836)
.+.||+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+||.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 4567888999999999999999999999999999999999999999999999999999864
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-16 Score=135.01 Aligned_cols=62 Identities=24% Similarity=0.367 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.++||.|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678899999999999999999999999999999999999999999999999999999754
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.60 E-value=1.7e-16 Score=135.01 Aligned_cols=62 Identities=35% Similarity=0.507 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
+||.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 46788999999999999999999999999999999999999999999999999999986543
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.60 E-value=1.3e-16 Score=135.60 Aligned_cols=63 Identities=30% Similarity=0.516 Sum_probs=59.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
++||.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 467888999999999999999999999999999999999999999999999999999986543
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.59 E-value=2.5e-16 Score=133.94 Aligned_cols=62 Identities=37% Similarity=0.500 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
+||+|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 57788999999999999999999999999999999999999999999999999999986543
No 28
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.59 E-value=2.1e-16 Score=138.92 Aligned_cols=62 Identities=34% Similarity=0.549 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
+++||.|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+||+.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 35677889999999999999999999999999999999999999999999999999999754
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.59 E-value=3.4e-16 Score=129.76 Aligned_cols=58 Identities=33% Similarity=0.453 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHH
Q 003251 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 192 (836)
||.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5678999999999999999999999999999999999999999999999999999974
No 30
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-16 Score=137.51 Aligned_cols=62 Identities=11% Similarity=0.207 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcC----CCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKEC----PHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~----~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.++||.|+.||.+|+..||..|+.+ +||+..+|++||.++||+++||++||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4567888999999999999999999 9999999999999999999999999999999999743
No 31
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.59 E-value=1.7e-16 Score=133.91 Aligned_cols=60 Identities=23% Similarity=0.439 Sum_probs=57.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHH
Q 003251 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 192 (836)
++||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 467889999999999999999999999999999999999999999999999999999864
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.59 E-value=4.5e-16 Score=134.14 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.+.||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 35678889999999999999999999999999999999999999999999999999999754
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.58 E-value=3.9e-16 Score=141.40 Aligned_cols=64 Identities=22% Similarity=0.343 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
...+|+|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+||++.+
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 3456778999999999999999999999999999999999999999999999999999986544
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.58 E-value=3.3e-16 Score=139.62 Aligned_cols=61 Identities=34% Similarity=0.492 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 133 PRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
+.||+|++||.+|+..||..|+.++||+..+|.+||.+|||+++||++||||||+|+||+.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4577889999999999999999999999999999999999999999999999999999753
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.58 E-value=5.4e-16 Score=126.93 Aligned_cols=57 Identities=39% Similarity=0.493 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHH
Q 003251 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (836)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (836)
+||.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467789999999999999999999999999999999999999999999999999975
No 36
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.57 E-value=4.2e-16 Score=134.30 Aligned_cols=63 Identities=30% Similarity=0.514 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.+++++.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 345677889999999999999999999999999999999999999999999999999999754
No 37
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.8e-16 Score=134.74 Aligned_cols=60 Identities=25% Similarity=0.557 Sum_probs=55.4
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 136 KRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 136 r~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
++|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 345679999999999999999999999999999999999999999999999999986543
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=9.5e-16 Score=132.05 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
+++|++||.+|+..||..|+. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 567889999999999999995 99999999999999999999999999999999999865
No 39
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.57 E-value=4.7e-16 Score=129.08 Aligned_cols=59 Identities=27% Similarity=0.418 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (836)
.+++++|++||.+|+..||..|..++||+..++.+||.++||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45677889999999999999999999999999999999999999999999999999976
No 40
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=9.8e-16 Score=131.53 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 135 KKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.++|++||.+|+..||..|+. ++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 456789999999999999996 99999999999999999999999999999999999855
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.57 E-value=5.4e-16 Score=128.52 Aligned_cols=57 Identities=33% Similarity=0.512 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 468899999999999999999999999999999999999999999999999999754
No 42
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.56 E-value=8.3e-16 Score=125.86 Aligned_cols=54 Identities=37% Similarity=0.493 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHH
Q 003251 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (836)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 192 (836)
+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999975
No 43
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.56 E-value=4.7e-16 Score=131.62 Aligned_cols=60 Identities=30% Similarity=0.511 Sum_probs=56.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 677899999999999999999999999999999999999999999999999999997543
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=8.6e-16 Score=139.34 Aligned_cols=63 Identities=32% Similarity=0.416 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
.+.+++|++||.+|+..||..|..++||+..+|.+||.+|||+++||++||||||+|+|++.+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 356778899999999999999999999999999999999999999999999999999998654
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.5e-15 Score=137.29 Aligned_cols=65 Identities=25% Similarity=0.401 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhc---------------ccceeeeeccchhhhHHHHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------LETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~Lg---------------Ls~rQVkvWFQNRRaK~Kkk~~r 195 (836)
.+++||.|+.||++|+..||..|+.++||+..+|++||.+|+ |++.||++||||||+|+|++...
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 346678899999999999999999999999999999999999 99999999999999999987654
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.3e-15 Score=132.73 Aligned_cols=59 Identities=22% Similarity=0.369 Sum_probs=54.4
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
+|.+||.+|+.+||+.|..++||+..+|++||+++||+++||++||||||+|+|+.+.+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 34569999999999999999999999999999999999999999999999999975543
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.7e-15 Score=130.31 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
+++|++|++|+.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+...
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 456778899999999999999977 999999999999999999999999999999999997543
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-15 Score=130.77 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 134 RKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
.++.|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+||++.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 4667899999999999999999999999999999999999999999999999999997543
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-15 Score=132.64 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
++.|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34578899999999999999999999999999999999999999999999999999754
No 50
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=1.2e-15 Score=136.91 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.+||.+|+.+||+.|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 16 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999644
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.52 E-value=3.1e-15 Score=128.64 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=57.2
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
||+|++||.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6778899999999999999 899999999999999999999999999999999999976544
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.52 E-value=4e-15 Score=131.48 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
.++||+|++|+.+|+..||..|.+ ++||+..+|.+||.++||+++||++||||||+|+|+...+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 456778899999999999999987 5999999999999999999999999999999999976544
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.52 E-value=1.8e-15 Score=149.13 Aligned_cols=62 Identities=24% Similarity=0.390 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 192 (836)
.+++||+|++||..|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678889999999999999999999999999999999999999999999999999999964
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.51 E-value=4.8e-15 Score=131.50 Aligned_cols=61 Identities=26% Similarity=0.502 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 135 KKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
||+|++|+.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|++...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6778899999999999999 899999999999999999999999999999999999986544
No 55
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.51 E-value=1.8e-15 Score=149.87 Aligned_cols=65 Identities=29% Similarity=0.452 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
.+++||+|++||..|+..||..|..++||+..+|.+||++++|+++||++||||||+|+||+.+.
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 45677889999999999999999999999999999999999999999999999999999976543
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.2e-15 Score=132.48 Aligned_cols=58 Identities=22% Similarity=0.407 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
++.+||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.+
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 3445999999999999999999999999999999999999999999999999986443
No 57
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=132.96 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhh---------------------cccceeeeeccchhhhHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRL---------------------CLETRQVKFWFQNRRTQM 189 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~L---------------------gLs~rQVkvWFQNRRaK~ 189 (836)
.+++||.|+.|++.|+..||..|+.++||+..+|++||.+| .|++.+|++||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678889999999999999999999999999999999999 689999999999999999
Q ss_pred HHHHHH
Q 003251 190 KTQLER 195 (836)
Q Consensus 190 Kkk~~r 195 (836)
|++++.
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 976543
No 58
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.50 E-value=2.9e-15 Score=145.66 Aligned_cols=62 Identities=29% Similarity=0.479 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 192 (836)
.+++||+|++||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45667789999999999999999999999999999999999999999999999999999964
No 59
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.49 E-value=6.4e-15 Score=121.92 Aligned_cols=55 Identities=40% Similarity=0.507 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 137 RYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
+|++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3678999999999999999 999999999999999999999999999999999986
No 60
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.49 E-value=3.9e-15 Score=124.78 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 134 RKKRYHRHTPQQIQELESLF---KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
.+++|++|+.+|+..||..| ..++||+..++.+||.++||++.||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46778899999999999999 89999999999999999999999999999999999885
No 61
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.49 E-value=3.4e-15 Score=128.77 Aligned_cols=57 Identities=33% Similarity=0.467 Sum_probs=53.0
Q ss_pred CCCCCCCCHHHHHHHHHhh-hcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 135 KKRYHRHTPQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F-~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
.+++.+++.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 3455678899999999999 99999999999999999999999999999999999985
No 62
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=1.5e-14 Score=122.69 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHHhhcccceeeeeccchhhhHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKE-CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (836)
.+++||.|+.|+.+|+..|+..|+. ++||+...|++||.++||++++|++||||||--.|
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3467888999999999999999999 99999999999999999999999999999997543
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.47 E-value=1.2e-14 Score=129.23 Aligned_cols=58 Identities=36% Similarity=0.467 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeeeeccchhhhHHH
Q 003251 133 PRKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (836)
Q Consensus 133 kkrr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (836)
+++|+|++|+.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 45667889999999999999999 99999999999999999999999999999999987
No 64
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.47 E-value=5.9e-15 Score=130.28 Aligned_cols=60 Identities=35% Similarity=0.427 Sum_probs=54.0
Q ss_pred CCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 134 RKKRYHRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 134 krr~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
++++|++|+.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 3456677999999999999999 99999999999999999999999999999999999753
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.46 E-value=1.5e-14 Score=141.18 Aligned_cols=60 Identities=33% Similarity=0.648 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
+++||+|++||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 466788999999999999999999999999999999999999999999999999999985
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.46 E-value=4e-15 Score=127.47 Aligned_cols=57 Identities=35% Similarity=0.454 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHH
Q 003251 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLER 195 (836)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r 195 (836)
..+|..|+..||+.|..++||+..+|.+||.++||+++||++||||||+|+||++..
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 358999999999999999999999999999999999999999999999999976543
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.45 E-value=2.1e-14 Score=121.61 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 141 HTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 141 fT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
-|.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+-+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999643
No 68
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.45 E-value=8.3e-15 Score=133.82 Aligned_cols=64 Identities=20% Similarity=0.338 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHh------------------hc---ccceeeeeccchhhhHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKR------------------LC---LETRQVKFWFQNRRTQM 189 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~------------------Lg---Ls~rQVkvWFQNRRaK~ 189 (836)
.+++||.|+.||..|+..||..|+.++||+..+|++||.. || |++.||++||||||+|+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3566788899999999999999999999999999999999 88 99999999999999998
Q ss_pred HHHHH
Q 003251 190 KTQLE 194 (836)
Q Consensus 190 Kkk~~ 194 (836)
|+++.
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 86553
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.3e-14 Score=122.44 Aligned_cols=49 Identities=41% Similarity=0.596 Sum_probs=46.1
Q ss_pred HHHHHHHHHhh-hcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 143 PQQIQELESLF-KECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 143 ~~Ql~~LE~~F-~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
+.|+.+||+.| ..++||+..+|.+||++|+|+++|||+||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45899999999 67999999999999999999999999999999999984
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.42 E-value=3.8e-14 Score=139.00 Aligned_cols=61 Identities=30% Similarity=0.501 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQ 192 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk 192 (836)
.++||+|++|+..|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3567788999999999999999999999999999999999999999999999999999963
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.6e-14 Score=119.72 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHH
Q 003251 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKT 191 (836)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kk 191 (836)
..+.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4568999999999999999999999999999999999999999999998764
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.38 E-value=6e-14 Score=138.39 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 131 NPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 131 ~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.+++||+|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 345678899999999999999999999999999999999999999999999999999998644
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=2e-13 Score=116.01 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHhhh---cCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhh
Q 003251 140 RHTPQQIQELESLFK---ECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (836)
Q Consensus 140 rfT~~Ql~~LE~~F~---~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 197 (836)
+|+.+|+..||..|. .++||+..+|.+||.++||+++||++||||||+|+|+...+++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999997665544
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.24 E-value=7.9e-13 Score=134.15 Aligned_cols=62 Identities=19% Similarity=0.313 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhc---------------------ccceeeeeccchhhhH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~Lg---------------------Ls~rQVkvWFQNRRaK 188 (836)
..+++||.|+.|++.|+..||+.|..++||+..+|++||..++ |++.||++||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3456678899999999999999999999999999999999999 9999999999999999
Q ss_pred HHH
Q 003251 189 MKT 191 (836)
Q Consensus 189 ~Kk 191 (836)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 874
No 75
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.22 E-value=2.1e-10 Score=117.65 Aligned_cols=197 Identities=11% Similarity=0.167 Sum_probs=140.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCceeeccC--CCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHH-
Q 003251 337 RSMFLELALAAMDELVKMAQTDEPLWIRSFE--GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV- 413 (836)
Q Consensus 337 ~~~l~~lA~~Am~El~~la~~~eplWi~~~~--~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LV- 413 (836)
....++++++|+++++++... .--|-...+ .+ ..| |.+..+. .|. .-|..++|...+..|.
T Consensus 20 ~~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g-~~v-----y~~~~~~------~g~---~~k~~~~v~~~~~~v~~ 83 (229)
T 1em2_A 20 EREYIRQGKEATAVVDQILAQ-EENWKFEKNNEYG-DTV-----YTIEVPF------HGK---TFILKTFLPCPAELVYQ 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTC-CEE-----EEEEETT------TEE---EEEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCC-CEE-----EEEecCC------CCc---eEEEEEEecCCHHHHHH
Confidence 356789999999999999863 347976522 23 111 3333321 121 3488899999999998
Q ss_pred HHhcChh---hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccc--ccccccceeeEEeeeceecCceEEEEE
Q 003251 414 ETLMDPN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL--SPLVPVREVNFLRFCKQHAEGVWAVVD 488 (836)
Q Consensus 414 e~lmD~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~--SPLvp~Re~~flRyckq~~~g~waVvD 488 (836)
++|+|.+ +|-.. +..++.++.|.. ++ .+ +-++..+ .++++.|||.++|+++.. ++.|+||-
T Consensus 84 ~~~~d~~~r~~Wd~~----~~~~~vle~~~~-------~t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~ 149 (229)
T 1em2_A 84 EVILQPERMVLWNKT----VTACQILQRVED-------NT-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSG 149 (229)
T ss_dssp HTTTCHHHHTTTCTT----EEEEEEEEEETT-------TE-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEE
T ss_pred HHHhCccchhhcccc----cceEEEEEecCC-------Ce-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEE
Confidence 7777665 55554 234566666542 12 23 4456655 578999999999999997 56699999
Q ss_pred EecCCccCCCCCCCccceeecCCcceEeecC--CCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003251 489 VSIDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (836)
Q Consensus 489 vSld~~~~~~~~~~~~~~~r~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 566 (836)
.|++.-. .|..+.++|+..+++|++|++++ +|.|+|||+-|++..-+ +| +.+++..+.-+.-.++..|+.+|+
T Consensus 150 ~Sv~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~ 224 (229)
T 1em2_A 150 IATSHSA-KPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRIS 224 (229)
T ss_dssp EECCCTT-SCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccCCC-CCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997432 22223589999999999999987 67899999999987765 55 677887777777788999988887
Q ss_pred HH
Q 003251 567 CL 568 (836)
Q Consensus 567 rl 568 (836)
.+
T Consensus 225 ~~ 226 (229)
T 1em2_A 225 EL 226 (229)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 76
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.20 E-value=1.9e-10 Score=117.44 Aligned_cols=193 Identities=15% Similarity=0.207 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeecc--CCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHh-
Q 003251 340 FLELALAAMDELVKMAQTDEPLWIRSF--EGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL- 416 (836)
Q Consensus 340 l~~lA~~Am~El~~la~~~eplWi~~~--~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~l- 416 (836)
...+|++||+|++++.+ ++.-|.... +.| .. -|.+.++.. | -.=|..++|...+.+|.+.|
T Consensus 12 y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~g-v~-----vy~~~~~~~------g---~~~k~~~~v~~~~~~v~~~l~ 75 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS-NQEGWKKESQQDNG-DK-----VMSKVVPDV------G---KVFRLEVVVDQPMERLYEELV 75 (221)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTCEEEEECTTS-CE-----EEEEECSSS------C---EEEEEEEEESSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCeEeeecCCC-cE-----EEEEEcCCC------c---eEEEEEEEEcCCHHHHHHHHH
Confidence 56899999999999976 345797652 333 11 233333211 2 34488999999999999998
Q ss_pred cC---hhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeec-ccccccccceeeEEeeeceecCceEEEEEEecC
Q 003251 417 MD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSID 492 (836)
Q Consensus 417 mD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~-v~SPLvp~Re~~flRyckq~~~g~waVvDvSld 492 (836)
+| +.+|-.. +..++.++.++. . -.+.|.... .+.++++.|||.++||.++. +|.++|+-.|++
T Consensus 76 ~d~~~r~~Wd~~----~~~~~vle~~~~-------~-t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~ 142 (221)
T 3p0l_A 76 ERMEAMGEWNPN----VKEIKVLQKIGK-------D-TFITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATD 142 (221)
T ss_dssp TTGGGTTTSCTT----CSEEEEEEECSS-------S-EEEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECC
T ss_pred hccchhhhcCcc----hheEEEEEecCC-------C-eEEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEecc
Confidence 46 4667765 233555555442 2 246664432 23568999999999999985 688999999987
Q ss_pred CccCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003251 493 TIRETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (836)
Q Consensus 493 ~~~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 566 (836)
.-. -|..+.++|+..+++|++|+++++| .|+|||+-|++..-+ +| +-+++..+.-+.-.++..|+++|+
T Consensus 143 ~~~-~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 143 FGN-MPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CTT-SCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC-CCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 1222358999999999999999988 999999999988766 44 456777777777789999988887
No 77
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.19 E-value=1.3e-10 Score=120.95 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHhhcCCCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHH-HHhcChhh
Q 003251 343 LALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALV-ETLMDPNR 421 (836)
Q Consensus 343 lA~~Am~El~~la~~~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LV-e~lmD~~~ 421 (836)
+++.++.|+++.+.....-|-...+.... +.|.+.. +.|...-.-|..++|...+.+++ ++|.|+.+
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~~~gi---------~V~~k~~---~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~ 100 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSSTDNT---------DLAFKKV---GDGNPLKLWKASVEVEAPPSVVLNRVLRERHL 100 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECCSSSC---------EEEEECC---CSSCCCCEEEEEEEESSCHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEecCCCe---------EEEEEEc---CCCCCcEEEEEEEEEcCChHHHHHHHHhhhhh
Confidence 34567778887765445569765432201 1221111 12333345677888877777764 78999999
Q ss_pred hhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeece-ecCceEEEEEEecCCccCCCCC
Q 003251 422 WAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQ-HAEGVWAVVDVSIDTIRETSGA 500 (836)
Q Consensus 422 W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq-~~~g~waVvDvSld~~~~~~~~ 500 (836)
|-.. +..++.++.|+. .-.++|..+..+.| ++.|||.++||.++ +++|.++||-.|++.-. .|..
T Consensus 101 Wd~~----~~~~~vle~id~--------~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~-~P~~ 166 (237)
T 2pso_A 101 WDED----FVQWKVVETLDR--------QTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEE-AQLL 166 (237)
T ss_dssp TCTT----BCCCEEEEEEET--------TEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTT-CCCC
T ss_pred HHhh----hceEEEEEEcCC--------CcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCC-CCCC
Confidence 9887 334677777652 23677888877766 79999999999985 78999999999998532 2322
Q ss_pred CCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHH
Q 003251 501 PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQC 565 (836)
Q Consensus 501 ~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqc 565 (836)
.++|+..+++|++|+++.+|.|+|||+-|++.. ..+|.-+..++.. .+-.-+..|+.++
T Consensus 167 -g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~~~----~~~~~l~~LR~~~ 225 (237)
T 2pso_A 167 -GGVRAVVMDSQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGFGH----LCAAEVARIRNSF 225 (237)
T ss_dssp -SSEECCEEEEEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHHHH----HHHHHHHHHHHTT
T ss_pred -CcEEEEEeccEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHHHHHH----HHHHHHHHHHHHH
Confidence 589999999999999999999999999999987 4577665333322 2223466665443
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.11 E-value=2.6e-11 Score=108.60 Aligned_cols=59 Identities=29% Similarity=0.419 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHHHhh
Q 003251 139 HRHTPQQIQELESLFKE---CPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHE 197 (836)
Q Consensus 139 trfT~~Ql~~LE~~F~~---~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~r~e 197 (836)
+-|+.+++..|+..|.+ ++||+..+|.+||+++||+++||++||||||.|+|+...+++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 56899999999999987 899999999999999999999999999999999998665543
No 79
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.07 E-value=3.2e-11 Score=124.03 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhc---------------------ccceeeeeccchhhhH
Q 003251 130 DNPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLC---------------------LETRQVKFWFQNRRTQ 188 (836)
Q Consensus 130 ~~~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~Lg---------------------Ls~rQVkvWFQNRRaK 188 (836)
..+++||.|+.|++.|+..||..|..++||+..+|++||+.++ |++.||++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 4556678888999999999999999999999999999999998 7899999999999987
Q ss_pred H
Q 003251 189 M 189 (836)
Q Consensus 189 ~ 189 (836)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 80
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=4.9e-11 Score=101.79 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhH
Q 003251 143 PQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (836)
Q Consensus 143 ~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK 188 (836)
.+|+..||.+|..+++|+..++.+||..+||+.++||+||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 81
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.99 E-value=4.7e-09 Score=105.78 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=118.5
Q ss_pred eeeeceeEEE-echhhHHHHhcC---hhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeE
Q 003251 397 EASRETGMVI-INSLALVETLMD---PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF 472 (836)
Q Consensus 397 EAsR~~g~V~-~~~~~LVe~lmD---~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~f 472 (836)
-.-|..++|. ..+.++.+.|+| +.+|... +...+||.. +| -.++|.++..|.|+ ..|||.+
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~-------~~~~~vle~------~~-~~i~~~~~~~p~p~-~~RD~v~ 116 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY-------VKELYEQEC------NG-ETVVYWEVKYPFPM-SNRDYVY 116 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT-------EEEEEEEEE------TT-EEEEEEEECCCTTS-CCEEEEE
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH-------HhhEEEecc------CC-CEEEEEEEEcCCCC-CCceEEE
Confidence 3568999995 999999999999 5677776 455666654 23 24789999999886 9999999
Q ss_pred Eeeeceec-Cc--eEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccc
Q 003251 473 LRFCKQHA-EG--VWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISG 549 (836)
Q Consensus 473 lRyckq~~-~g--~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg 549 (836)
+|+++.++ +| .|+|+-.|++.-. .|..+.++|++.+++|++|++..+|.|+||++-|++.. ..+|.- |++..
T Consensus 117 ~~~~~~~~~~g~~~~~i~~~Sv~~p~-~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~ 191 (214)
T 1ln1_A 117 LRQRRDLDMEGRKIHVILARSTSMPQ-LGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWA 191 (214)
T ss_dssp EEEEEEECSTTCCEEEEEEEECCBTT-BCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHH
T ss_pred EEEEEecccCCCeEEEEEEecccCCC-CCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHH
Confidence 99999875 66 5999999987432 22223589999999999999999999999999999987 455543 34445
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 003251 550 MGFGAQRWVATLQRQCECL 568 (836)
Q Consensus 550 ~afGA~rWlatLqRqcerl 568 (836)
+.-++..++..|+++|+..
T Consensus 192 ~~~~~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 192 AKNGVPNFLKDMARACQNY 210 (214)
T ss_dssp HHTHHHHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHHHhc
Confidence 5566778889998888743
No 82
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.94 E-value=1.1e-10 Score=127.76 Aligned_cols=56 Identities=27% Similarity=0.426 Sum_probs=52.5
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHH
Q 003251 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~K 190 (836)
++.++.++.+|+..||+.|+.++||+..+|++||+++||+++|||+||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 44567899999999999999999999999999999999999999999999999875
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.91 E-value=1.2e-08 Score=104.51 Aligned_cols=190 Identities=11% Similarity=0.135 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceeeccC-CCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEEechhhHHHHhcC
Q 003251 340 FLELALAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMD 418 (836)
Q Consensus 340 l~~lA~~Am~El~~la~~~eplWi~~~~-~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~~~~~~LVe~lmD 418 (836)
+.+.+.++|.++..+. +.-|-...+ .+ .+.|.+. ..+...-.-|..++|...+..|.+.|+|
T Consensus 26 ~~~~~~e~l~~~~~~~---~~~W~~~~~~~g----------v~vy~~~----~~~~~~~~~k~~~~v~~~~~~v~~~l~d 88 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE---EDEWRVAKKAKD----------VTVWRKP----SEEFNGYLYKAQGVMDDVVNNVIDHIRP 88 (224)
T ss_dssp HHHHHHHHHHHHTTSC---GGGCEEEEEETT----------EEEEEEE----CSSSSSEEEEEEEEESSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhhC---CCCCEEEEECCC----------EEEEEEe----ccCCCceEEEEEEEEeCCHHHHHHHHhC
Confidence 5666666666655543 556965432 22 1222220 1111223458889999999999999999
Q ss_pred hh---hhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccc-ccccccceeeEEeeeceecCceEEEEEEecCCc
Q 003251 419 PN---RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVL-SPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTI 494 (836)
Q Consensus 419 ~~---~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~-SPLvp~Re~~flRyckq~~~g~waVvDvSld~~ 494 (836)
.. +|-.. +..++.++.|+ +.-.+.|.-+.-+ -|+|..|||.++|+.++.++| ++|+-+|++.-
T Consensus 89 ~~~r~~Wd~~----~~~~~vle~id--------~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp 155 (224)
T 1jss_A 89 GPWRLDWDRL----MTSLDVLEHFE--------ENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS 155 (224)
T ss_dssp STTHHHHCSS----EEEEEEEEECS--------TTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC
T ss_pred cccccccccc----eeeEEEEEEcC--------CCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC
Confidence 65 78765 23355555543 2235666666543 457999999999999998877 78899998843
Q ss_pred cCCCCCCCccceeecCCcceEeecCCC--ccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHHHHHHHH
Q 003251 495 RETSGAPAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 566 (836)
Q Consensus 495 ~~~~~~~~~~~~~r~PSGclIq~~~nG--~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlatLqRqce 566 (836)
.. .+.++|++..++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+...++..|+.+|+
T Consensus 156 ~~---~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 156 ET---RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CC---CTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CC---CCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 22 2358999999999999999875 899999999988754 44 456777777777888999988765
No 84
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.72 E-value=5.1e-08 Score=102.94 Aligned_cols=128 Identities=11% Similarity=0.099 Sum_probs=96.1
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeeccccc--ccccceeeEEeeec
Q 003251 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSP--LVPVREVNFLRFCK 477 (836)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SP--Lvp~Re~~flRyck 477 (836)
|..++|...+..|.+.|+|.+.+.+=-+.+ ..++.++-|+. + .++| ++..++| ++++|||..|||.+
T Consensus 91 k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~-~~~~vle~id~------~---~ivY-~~~~p~~~~~v~~RDFV~lr~~r 159 (258)
T 3fo5_A 91 HMEMVVHVDAAQAFLLLSDLRQRPEWDKHY-RSVELVQQVDE------D---DAIY-HVTSPALGGHTKPQDFVILASRR 159 (258)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGGGGTCTTC-CEEEEEEEEET------T---EEEE-EEEECCCTTCSSCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHhCchhHhHhhhhc-cEEEEEEEcCC------C---eEEE-EEecCCccCCCCCCEEEEEEEEE
Confidence 888899999999999999886444333332 33566655552 1 4677 6777876 79999999999998
Q ss_pred ee-cCce-EEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeecccccccc
Q 003251 478 QH-AEGV-WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQL 541 (836)
Q Consensus 478 q~-~~g~-waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 541 (836)
.. .+|. ++|+-+|++.-. -|..+.++|++.+|+||+|+++++|.|+||++-|++- ..++..
T Consensus 160 ~~~~~G~~yvi~~~SV~hp~-~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~~ 222 (258)
T 3fo5_A 160 KPCDNGDPYVIALRSVTLPT-HRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNYV 222 (258)
T ss_dssp CCSSTTCCEEEEEEEEECTT-SCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHHH
T ss_pred eccCCCCEEEEEEEeccCCC-CCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCce
Confidence 74 4775 999999987422 2222358999999999999999999999999988873 445443
No 85
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.58 E-value=6.2e-07 Score=88.76 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=110.7
Q ss_pred eeeceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeec
Q 003251 398 ASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCK 477 (836)
Q Consensus 398 AsR~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyck 477 (836)
.=|..++|...+.++.+.|+|.+...+--|. +...+||.. . ++ -.++|.++..|-| +..|||.++|+.+
T Consensus 28 ~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~----~~~~~vle~-~----~~-~~i~y~~~~~p~p-~~~RD~v~~~~~~ 96 (189)
T 3qsz_A 28 EFRGEVRLKAAADDVVKVLRDANAFRQWMPD----VAASELLKA-T----DT-EQYHYLDNSAPWP-VSNRDGVYHFTYE 96 (189)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTSTT----EEEEEEEEE-C----SS-EEEEEEEECCSSS-CCCEEEEEEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHhHHHhhhHHHh----cCEEEEEee-c----CC-ceEEEEEeecCCC-cCCcceEEEEEEE
Confidence 4688899999999999999997765555454 566667765 2 12 3567888887766 7899999999999
Q ss_pred eecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 003251 478 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 557 (836)
Q Consensus 478 q~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rW 557 (836)
...+|...|+=.+.. ...|..+.++|++.+++|++|++ .+|.|+||++-|++..- .+|. -|++..+.-+.-..
T Consensus 97 ~~~~g~~~i~~~~~~--~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~---~lvn~~~~~~~~~~ 169 (189)
T 3qsz_A 97 KAGDGAITVRVEAVP--DYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS---WLANQTVVETPFGT 169 (189)
T ss_dssp ECTTSCEEEEEEECT--TSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH---HHHHHTTTHHHHHH
T ss_pred ECCCCeEEEEEEcCC--CccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH---HHHHHHHHHHHHHH
Confidence 988887655433321 11122235799999999999999 99999999999998763 3443 34555555566678
Q ss_pred HHHHHHHHHH
Q 003251 558 VATLQRQCEC 567 (836)
Q Consensus 558 latLqRqcer 567 (836)
+..|+++|+.
T Consensus 170 l~~L~k~~~~ 179 (189)
T 3qsz_A 170 LKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhhh
Confidence 8899888764
No 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.37 E-value=2.1e-08 Score=75.74 Aligned_cols=21 Identities=48% Similarity=0.874 Sum_probs=18.2
Q ss_pred eeeeeccchhhhHHHHHHHHh
Q 003251 176 RQVKFWFQNRRTQMKTQLERH 196 (836)
Q Consensus 176 rQVkvWFQNRRaK~Kkk~~r~ 196 (836)
+||+|||||||+||||++...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 699999999999999876653
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.33 E-value=3.2e-06 Score=87.98 Aligned_cols=200 Identities=13% Similarity=0.211 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCceeeccCCCcccccCHHHHHhhcCCCCCCCCCCCceeeeeceeEEE-echhhHHHH
Q 003251 340 FLELALAAMDELVKMAQT---DEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVI-INSLALVET 415 (836)
Q Consensus 340 l~~lA~~Am~El~~la~~---~eplWi~~~~~gp~e~Ln~~eY~~~F~~~~g~~~~g~~~EAsR~~g~V~-~~~~~LVe~ 415 (836)
+.++++..+.|.+..+.. ++.-|-...+.+. .+.|.+.. ...|...-.=|..++|. ..+..+.+.
T Consensus 24 ~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~~~g---------v~vy~~~~--~~~g~~~~~~K~~~~~~~~~~~~v~~~ 92 (255)
T 2e3n_A 24 FVQKVEEMVQNHMTYSLQDVGGDANWQLVVEEGE---------MKVYRREV--EENGIVLDPLKATHAVKGVTGHEVCNY 92 (255)
T ss_dssp THHHHHHHHHHHHHHTTSCCTTCTTEEEEEEETT---------EEEEEECC--EETTEECCCEEEEEEEETCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcEEEEeCCC---------EEEEEEEc--CCCCceeeeEEEEEEEcCCCHHHHHHH
Confidence 455566666666666543 3356976533210 12232211 01132211245556665 789999999
Q ss_pred hcCh---hhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec----C--ceEEE
Q 003251 416 LMDP---NRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA----E--GVWAV 486 (836)
Q Consensus 416 lmD~---~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~----~--g~waV 486 (836)
|+|. .+|-.. +..++.++.|.. ++ .++|..+..|.|+ ..|||.++|++++.. + +.|+|
T Consensus 93 l~d~~~r~~Wd~~----~~~~~vle~i~~-------~~-~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i 159 (255)
T 2e3n_A 93 FWNVDVRNDWETT----IENFHVVETLAD-------NA-IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIV 159 (255)
T ss_dssp HHCGGGHHHHCCS----EEEEEEEEEEET-------TE-EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEE
T ss_pred HhCcchHhhhhhh----cceeEEEEEcCC-------CC-EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEE
Confidence 9994 567665 344666666542 12 7889999998886 889999999999883 3 59999
Q ss_pred EEEecCCccCCCCCCCccceee---cCCcceEeecCC--------CccEEEEEEeeeeccccccccchhhhccchhHHHH
Q 003251 487 VDVSIDTIRETSGAPAFVNCRR---LPSGCVVQDMPN--------GYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQ 555 (836)
Q Consensus 487 vDvSld~~~~~~~~~~~~~~~r---~PSGclIq~~~n--------G~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~ 555 (836)
+..|++.-. .|..+.++|... +.+|++|++..+ +.|+|||+-|++..- .+|.- +++.....+.-
T Consensus 160 ~~~Sv~~~~-~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~ 234 (255)
T 2e3n_A 160 CNFSVDHDS-APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPAS---VLRAVAKREYP 234 (255)
T ss_dssp EEEECCCTT-SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHH
T ss_pred EEeccCCCC-CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhcccc
Confidence 999998532 122224789884 678999998733 579999999998764 34442 34555566677
Q ss_pred HHHHHHHHHHHHH
Q 003251 556 RWVATLQRQCECL 568 (836)
Q Consensus 556 rWlatLqRqcerl 568 (836)
..+..|+.+|+..
T Consensus 235 ~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 235 KFLKRFTSYVQEK 247 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7888888887744
No 88
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=97.37 E-value=0.0076 Score=61.30 Aligned_cols=198 Identities=14% Similarity=0.146 Sum_probs=116.7
Q ss_pred hhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhh-
Q 003251 587 GGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL- 665 (836)
Q Consensus 587 ~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FL- 665 (836)
..+..++++|+..+..|-.-+.. ..+|... . ..++|+|..+...+.+ |.++ ++..-++++|..||++|
T Consensus 19 ~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~-~--~~~gv~v~~~~~~~~~----~~~~--k~~~~v~~~~~~v~~~l~ 87 (231)
T 2r55_A 19 YFQSMAAQMSEAVAEKMLQYRRD--TAGWKIC-R--EGNGVSVSWRPSVEFP----GNLY--RGEGIVYGTLEEVWDCVK 87 (231)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC--CSSCEEE-E--CCSSEEEEEEECSSSS----SEEE--EEEEEESSCHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC--CCCCEEE-E--eCCCEEEEEEccCCCC----CcEE--EEEEEECCCHHHHHHHHH
Confidence 34456999999999888876533 4789987 3 3578999988763222 3444 44444599999999999
Q ss_pred -hccccchhhhhhcCCCCcceEeecccCCCCCceEEEEE-eccC----CCCCCceEEEEccccCCCCcEE-EEeecchhh
Q 003251 666 -RDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLR-ASAI----NANQSSMLILQETCTDAAGSLV-VYAPVDIPA 738 (836)
Q Consensus 666 -rde~~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr-~~~~----~~~~~~~liLQes~td~sgs~v-VyAPvD~~~ 738 (836)
.|...|.+||.... ..+.+..|. .... |++ +... -....+..+|.-...+.-|+++ +.-.||-+.
T Consensus 88 ~~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~ 159 (231)
T 2r55_A 88 PAVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPL 159 (231)
T ss_dssp C--CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTT
T ss_pred hhCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCC
Confidence 99999999997432 233334442 1222 333 2211 1234566766654445557775 577788654
Q ss_pred hhhhhcCCCCCC--ccccCCCcEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh
Q 003251 739 MHVVMNGGDSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET 816 (836)
Q Consensus 739 m~~vm~G~ds~~--v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t 816 (836)
+- ..+.+ +.++++||.|-|.... .++|.+|.-+|+=.... +...-|..
T Consensus 160 ~P-----~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~----iP~~lvn~ 209 (231)
T 2r55_A 160 CP-----PKPGFVRGFNHPCGCFCEPLPGE---------------------PTKTNLVTFFHTDLSGY----LPQNVVDS 209 (231)
T ss_dssp SC-----CCTTCEEEEECSEEEEEEECC-----------------------CCCEEEEEEECEECCSS----CCHHHHHH
T ss_pred CC-----CCCCCEEEEEEeeEEEEEEeCCC---------------------CCcEEEEEEEEeCCCCC----ccHHHHHH
Confidence 21 11233 3588999999984211 14688988777654432 22111221
Q ss_pred -HhhhhhHHHHHHHHHhc
Q 003251 817 -VNNLISCTVQKIKAALQ 833 (836)
Q Consensus 817 -v~~li~~tv~~Ik~AL~ 833 (836)
+..-+-.++++++.++.
T Consensus 210 ~~~~~~~~~~~~Lr~~~~ 227 (231)
T 2r55_A 210 FFPRSMTRFYANLQKAVK 227 (231)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHHHHHHHHHH
Confidence 22223347777777764
No 89
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=96.92 E-value=0.019 Score=56.32 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=98.3
Q ss_pred CCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcCCCCcceEeecccC
Q 003251 613 HKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKG 692 (836)
Q Consensus 613 ~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g 692 (836)
++|... . ..++|+|.+++.. |. | +..-++...++.||+.||++|.|-..|.+||-.+ .+.--|.+
T Consensus 3 ~~W~~~-~--~~~gv~v~~~~~~---~~--~-~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~-----~~~~vle~- 67 (189)
T 3qsz_A 3 DGWSLA-K--DAEGIKVYVRNVE---GS--P-LREFRGEVRLKAAADDVVKVLRDANAFRQWMPDV-----AASELLKA- 67 (189)
T ss_dssp CCCEEE-E--EETTEEEEEECCT---TC--S-SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTE-----EEEEEEEE-
T ss_pred CCCEEE-E--cCCCEEEEEEeCC---CC--C-eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhc-----CEEEEEee-
Confidence 589876 3 2578999999862 22 1 2345667777899999999999999999999643 33333433
Q ss_pred CCCCceEEEEEeccC-CCCCCceEEEEccccCCCCcEEEEeecchhhhhhhhcCCCCCC--ccccCCCcEEcCCCCCCCC
Q 003251 693 QDHGNCVSLLRASAI-NANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIVPDGPDSRG 769 (836)
Q Consensus 693 ~~~gn~vsllr~~~~-~~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~ds~~--v~LLPSGF~I~Pdg~~~~~ 769 (836)
+.+..|--...... .-...+..++.....|..|.++|..-.+-+.+ ...+.+ +..+++||.|-| |.
T Consensus 68 -~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~-----P~~~~~VR~~~~~~~~~i~p-~~---- 136 (189)
T 3qsz_A 68 -TDTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDYL-----PLRKGKVRIPRAKGQWTLVP-DA---- 136 (189)
T ss_dssp -CSSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTSS-----CCCTTSEECCCEEEEEEEEE-CS----
T ss_pred -cCCceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCcc-----CCCCCeEEeeEeeEEEEEEE-CC----
Confidence 33344433333322 12334555555433444466554433221110 011233 457788888888 32
Q ss_pred CCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh--HhhhhhHHHHHHHHHhc
Q 003251 770 PLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAALQ 833 (836)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tv~~Ik~AL~ 833 (836)
++|.+|.-+|+=.... .+..+.. +...+-.++++++.++.
T Consensus 137 -------------------~~t~vt~~~~~dp~G~-----iP~~lvn~~~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 -------------------DGVDVTYQMHASPGGS-----IPSWLANQTVVETPFGTLKALRSHLR 178 (189)
T ss_dssp -------------------SSEEEEEEEEECSCSS-----SCHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred -------------------CeEEEEEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3688887777755432 2233332 33344457777777764
No 90
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=96.47 E-value=0.042 Score=55.82 Aligned_cols=191 Identities=17% Similarity=0.218 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccc
Q 003251 592 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLR 671 (836)
Q Consensus 592 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R 671 (836)
+.+.+...+..|.... ..+|... .. .++|+|.++...+. .|-+. +...-+++||+.||++|.|...|
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~-~~--~~gv~vy~~~~~~~----~~~~~--k~~~~v~~~~~~v~~~l~d~~~r 92 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVA-KK--AKDVTVWRKPSEEF----NGYLY--KAQGVMDDVVNNVIDHIRPGPWR 92 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEE-EE--ETTEEEEEEECSSS----SSEEE--EEEEEESSCHHHHHHHHSSSTTH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEE-EE--CCCEEEEEEeccCC----CceEE--EEEEEEeCCHHHHHHHHhCcccc
Confidence 4444444444444322 5689876 32 47899999865332 23344 44445599999999999999999
Q ss_pred hhhhhhcCCCCcceEeecccCCCCCceEEEEEeccCC---CCCCceEEEEccccCCCCcEEEEeecchhhhhhhhcCCCC
Q 003251 672 SEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAIN---ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDS 748 (836)
Q Consensus 672 ~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~~---~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~G~ds 748 (836)
.+||.... ..+.+-+| +..+.|--......- ....+.+++.....+..|.+++.-.||-+.+ .+
T Consensus 93 ~~Wd~~~~--~~~vle~i----d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~ 159 (224)
T 1jss_A 93 LDWDRLMT--SLDVLEHF----EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RP 159 (224)
T ss_dssp HHHCSSEE--EEEEEEEC----STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CT
T ss_pred ccccccee--eEEEEEEc----CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CC
Confidence 99996432 12333333 233344333332221 2456777766533344556666677776653 13
Q ss_pred CCc--cccCCCcEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhH-hhhhhHHH
Q 003251 749 AYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NNLISCTV 825 (836)
Q Consensus 749 ~~v--~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv-~~li~~tv 825 (836)
.+| .++++||.|-|.... ...|.+|.-+|+=... .+...-|..+ -..+-.++
T Consensus 160 g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G----~iP~~lvn~~~~~~~~~~~ 214 (224)
T 1jss_A 160 EFVRGYNHPCGWFCVPLKDS---------------------PSQSLLTGYIQTDLRG----MIPQSAVDTAMASTLANFY 214 (224)
T ss_dssp TSEECEECSEEEEEEEETTE---------------------EEEEEEEEEECEECCS----CCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecccEEEEEEcCCC---------------------CCceEEEEEEEeCCCC----CccHHHHHHHHHHhHHHHH
Confidence 444 478999999883211 1358888665554433 2332233322 22233477
Q ss_pred HHHHHHhc
Q 003251 826 QKIKAALQ 833 (836)
Q Consensus 826 ~~Ik~AL~ 833 (836)
+.++.++.
T Consensus 215 ~~Lr~~~~ 222 (224)
T 1jss_A 215 SDLRKGLR 222 (224)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 77776654
No 91
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=96.29 E-value=0.13 Score=51.87 Aligned_cols=194 Identities=14% Similarity=0.199 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHHHhh-hcc
Q 003251 590 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFL-RDE 668 (836)
Q Consensus 590 ~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FL-rde 668 (836)
..-.++++.-+..+..-+. ...+|... . ...++|.|.+++. ++. |.++ ++..-+++||+.||++| .|.
T Consensus 10 ~~y~~~~~~~~~~~l~~~~--~~~gW~~~-~-~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 10 LAYLQQGEEAMQKALGILS--NQEGWKKE-S-QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHH--SCTTCEEE-E-ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHh--CCCCCeEe-e-ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhcc
Confidence 3445566655555554443 35689976 2 1246788999984 332 4444 44445599999999999 587
Q ss_pred ccchhhhhhcCCCCcceEeecccCCCCCceEEEEEe--cc--CC-CCCCceEEEEccccCCCCcEEEE-eecchhhhhhh
Q 003251 669 RLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRA--SA--IN-ANQSSMLILQETCTDAAGSLVVY-APVDIPAMHVV 742 (836)
Q Consensus 669 ~~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~--~~--~~-~~~~~~liLQes~td~sgs~vVy-APvD~~~m~~v 742 (836)
..|.+||.... ..+.+-+|. .+.. |++. .. .. ....+..+|.-...+ .+.+++. -.|+-+.+-
T Consensus 79 ~~r~~Wd~~~~--~~~vle~~~----~~t~--I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~~~~P-- 147 (221)
T 3p0l_A 79 EAMGEWNPNVK--EIKVLQKIG----KDTF--ITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDFGNMP-- 147 (221)
T ss_dssp GGTTTSCTTCS--EEEEEEECS----SSEE--EEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCCTTSC--
T ss_pred chhhhcCcchh--eEEEEEecC----CCeE--EEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccCCCCC--
Confidence 89999996432 233344442 2222 3332 11 11 234577776654444 3555554 445544321
Q ss_pred hcCCCCCCc--cccCCCcEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHhH-hh
Q 003251 743 MNGGDSAYV--ALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETV-NN 819 (836)
Q Consensus 743 m~G~ds~~v--~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~tv-~~ 819 (836)
..+.+| .++++||.|-|.+.. ..+|.+|.-+|+=.... +..--|..+ ..
T Consensus 148 ---~~~g~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G~----iP~~lvn~~~~~ 199 (221)
T 3p0l_A 148 ---EQKGVIRAEHGPTCMVLHPLAGS---------------------PSKTKLTWLLSIDLKGW----LPKSIINQVLSQ 199 (221)
T ss_dssp ---CCTTSEECEECSCEEEEEEETTE---------------------EEEEEEEEEECEECCSS----CCHHHHHHHHHH
T ss_pred ---CCCCeEEEeccceEEEEEECCCC---------------------CCcEEEEEEEEecCCCC----CCHHHHHHHHHH
Confidence 113344 578999999884321 13688888887754432 333233332 22
Q ss_pred hhhHHHHHHHHHhc
Q 003251 820 LISCTVQKIKAALQ 833 (836)
Q Consensus 820 li~~tv~~Ik~AL~ 833 (836)
.+-.+++.++.++.
T Consensus 200 ~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 200 TQVDFANHLRKRLE 213 (221)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 33348888888876
No 92
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=96.14 E-value=0.1 Score=51.89 Aligned_cols=172 Identities=17% Similarity=0.197 Sum_probs=99.5
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccc-cChhHHHHhhhccccchhhhhhcCCCCcceEeec
Q 003251 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLP-VSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHI 689 (836)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLp-v~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~i 689 (836)
...+|... .. .++|+|..++..+ . .+..-++..-++ +||+.||++|.|...|.+||.... +.--|
T Consensus 26 ~~~~W~~~-~~--~~~v~v~~~~~~~---~---~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~-----~~~vl 91 (214)
T 1ln1_A 26 AGADWQLL-VE--TSGISIYRLLDKK---T---GLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVK-----ELYEQ 91 (214)
T ss_dssp TTTTCEEE-EE--ETTEEEEEEEETT---T---TEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEE-----EEEEE
T ss_pred CCCCcEEE-EE--CCCeEEEEeccCC---C---CcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHh-----hEEEe
Confidence 45689987 32 4679999987522 1 244667778898 999999999999999999997432 22112
Q ss_pred ccCCCCCceEEEEEeccCC-CCCCceEEEEcccc--CCCCc--E-EEEeecchhhhhhhhcCCCCCC--ccccCCCcEEc
Q 003251 690 AKGQDHGNCVSLLRASAIN-ANQSSMLILQETCT--DAAGS--L-VVYAPVDIPAMHVVMNGGDSAY--VALLPSGFAIV 761 (836)
Q Consensus 690 a~g~~~gn~vsllr~~~~~-~~~~~~liLQes~t--d~sgs--~-vVyAPvD~~~m~~vm~G~ds~~--v~LLPSGF~I~ 761 (836)
-. .|+.|--......- ....+..++. ++. |..|. + ++.-.|+.+.+ ...+.+ +..+++||.|-
T Consensus 92 e~---~~~~i~~~~~~~p~p~~~RD~v~~~-~~~~~~~~g~~~~~i~~~Sv~~p~~-----P~~~~~VR~~~~~~~~~i~ 162 (214)
T 1ln1_A 92 EC---NGETVVYWEVKYPFPMSNRDYVYLR-QRRDLDMEGRKIHVILARSTSMPQL-----GERSGVIRVKQYKQSLAIE 162 (214)
T ss_dssp EE---TTEEEEEEEECCCTTSCCEEEEEEE-EEEEECSTTCCEEEEEEEECCBTTB-----CCCTTSEEECCEEEEEEEE
T ss_pred cc---CCCEEEEEEEEcCCCCCCceEEEEE-EEEecccCCCeEEEEEEecccCCCC-----CCCCCcEEEEEEEEEEEEe
Confidence 11 12333333333211 2233555555 343 33442 3 44556665442 112344 55789999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh--HhhhhhHHHHHHHHHhc
Q 003251 762 PDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET--VNNLISCTVQKIKAALQ 833 (836)
Q Consensus 762 Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t--v~~li~~tv~~Ik~AL~ 833 (836)
|.+. ++|.+|.-.|+=.... .+..+.. +...+-.++++++.++.
T Consensus 163 p~~~-----------------------~~t~v~~~~~~Dp~G~-----iP~~l~n~~~~~~~~~~l~~l~k~~~ 208 (214)
T 1ln1_A 163 SDGK-----------------------KGSKVFMYYFDNPGGQ-----IPSWLINWAAKNGVPNFLKDMARACQ 208 (214)
T ss_dssp ECSS-----------------------SSEEEEEEEEECCSSC-----CCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCC-----------------------CceEEEEEEEECCCCc-----ccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8421 3688888877765432 2233322 33344456777776653
No 93
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=96.10 E-value=0.16 Score=51.55 Aligned_cols=196 Identities=9% Similarity=0.095 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHHH-Hhhhcc
Q 003251 590 RSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLF-NFLRDE 668 (836)
Q Consensus 590 ~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf-~FLrde 668 (836)
+..++.++.....|-.-+. ...+|... .. ..++|+|.++...+ .|.+.-+ ..-+++||..|| ++|.|.
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~-~~-~~~g~~vy~~~~~~-----~g~~~k~--~~~v~~~~~~v~~~~~~d~ 89 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFE-KN-NEYGDTVYTIEVPF-----HGKTFIL--KTFLPCPAELVYQEVILQP 89 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEE-EE-CTTCCEEEEEEETT-----TEEEEEE--EEEESSCHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEE-Ee-cCCCCEEEEEecCC-----CCceEEE--EEEecCCHHHHHHHHHhCc
Confidence 3444444444444443332 24689877 32 13578898887521 2344434 444599999999 999999
Q ss_pred ccchhhhhhcCCCCcceEeecccCCCCCceEEEEEeccC---C-CCCCceEEEEccccCCCCcEEEEeecchhhhhhhhc
Q 003251 669 RLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI---N-ANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMN 744 (836)
Q Consensus 669 ~~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~---~-~~~~~~liLQes~td~sgs~vVyAPvD~~~m~~vm~ 744 (836)
..|.+||.... .++.+-+| +.++.| +..+... . ....+.+++.-...+..+-++++..|+-+.+-
T Consensus 90 ~~r~~Wd~~~~--~~~vle~~----~~~t~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P---- 158 (229)
T 1em2_A 90 ERMVLWNKTVT--ACQILQRV----EDNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP---- 158 (229)
T ss_dssp HHHTTTCTTEE--EEEEEEEE----TTTEEE-EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC----
T ss_pred cchhhcccccc--eEEEEEec----CCCeEE-EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC----
Confidence 99999997432 13333344 222333 2223221 1 23456666665334433445566677766431
Q ss_pred CCCCCC--ccccCCCcEEcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhHHh-Hhhhh
Q 003251 745 GGDSAY--VALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVET-VNNLI 821 (836)
Q Consensus 745 G~ds~~--v~LLPSGF~I~Pdg~~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv~t-v~~li 821 (836)
..+.+ +.++++||.|-|.... .++|.+|.-+|+=... .+..--+.. +...+
T Consensus 159 -~~~~~VR~~~~~~g~~i~p~~~~---------------------~~~t~vt~~~~~Dp~G----~iP~~l~n~~~~~~~ 212 (229)
T 1em2_A 159 -PTHKYVRGENGPGGMIVLKSASN---------------------PRVCTFVWILNTDLKG----RLPRYLIHQSLAATM 212 (229)
T ss_dssp -CCTTSEECEECSEEEEEEECSSC---------------------TTCEEEEEEECEECCS----SSCHHHHHHHHHHHH
T ss_pred -CCCCCEeeeecccEEEEEecCCC---------------------CCcEEEEEEEEECCCC----CCCHHHHHHHHHHHH
Confidence 11222 4578999999983211 1468888877765443 222222222 23344
Q ss_pred hHHHHHHHHHhc
Q 003251 822 SCTVQKIKAALQ 833 (836)
Q Consensus 822 ~~tv~~Ik~AL~ 833 (836)
-.+++.++.++.
T Consensus 213 ~~~~~~Lr~~~~ 224 (229)
T 1em2_A 213 FEFAFHLRQRIS 224 (229)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457777777664
No 94
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=96.01 E-value=0.12 Score=53.36 Aligned_cols=175 Identities=19% Similarity=0.271 Sum_probs=101.0
Q ss_pred CCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEEEEEEeeccccChhHH-HHhhhccccchhhhhhcCCCCcceEeec
Q 003251 611 TVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRL-FNFLRDERLRSEWDILSNGGPMQEMAHI 689 (836)
Q Consensus 611 ~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~v-f~FLrde~~R~eWd~ls~G~~vqe~~~i 689 (836)
...+|... . ..++|+|.+++.. +|.+ +..-++..-++.+|..+ +++|.| |.+||...- .++.+-.|
T Consensus 48 ~~~gW~~~-~--~~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~--~~~vle~i 114 (237)
T 2pso_A 48 KFKGWVTC-S--STDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFV--QWKVVETL 114 (237)
T ss_dssp HCCSCEEE-C--CSSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBC--CCEEEEEE
T ss_pred CCCCCEEE-e--cCCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhc--eEEEEEEc
Confidence 45579877 3 3578999999852 2322 22346666778667665 567777 999997543 23444444
Q ss_pred ccCCCCCceEEEEEeccCCC-CCCceEEEEccccC-CCCcEEE-EeecchhhhhhhhcCCCCCCccccCCCcEEcCCCCC
Q 003251 690 AKGQDHGNCVSLLRASAINA-NQSSMLILQETCTD-AAGSLVV-YAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPD 766 (836)
Q Consensus 690 a~g~~~gn~vsllr~~~~~~-~~~~~liLQes~td-~sgs~vV-yAPvD~~~m~~vm~G~ds~~v~LLPSGF~I~Pdg~~ 766 (836)
. ..+.|--...+..-+ ...+.++|.-...| ..|++|| ...|+-+.+-. . |. =-+..+++||.|-|.+.
T Consensus 115 d----~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~-~-g~--VR~~~~~~g~~i~P~~~- 185 (237)
T 2pso_A 115 D----RQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL-L-GG--VRAVVMDSQYLIEPCGS- 185 (237)
T ss_dssp E----TTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC-C-SS--EECCEEEEEEEEEECST-
T ss_pred C----CCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCC-C-Cc--EEEEEeccEEEEEECCC-
Confidence 2 233343333333222 34566666643345 3466665 44566554311 1 11 23568899999999531
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhH-HhHhhhhhHHHHHHHHHhcc
Q 003251 767 SRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESV-ETVNNLISCTVQKIKAALQC 834 (836)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv-~tv~~li~~tv~~Ik~AL~~ 834 (836)
++|.||.-+|+=.... -+..+ ..+...+..++.+||.++..
T Consensus 186 ----------------------~~t~vt~~~~~Dp~G~-----iP~~ln~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 186 ----------------------GKSRLTHICRIDLKGH-----SPEWYSKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp ----------------------TCEEEEEEEEECCSSS-----CTTTTTTHHHHHHHHHHHHHHHTTSC
T ss_pred ----------------------CCEEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3688988877765533 22233 11334444588889888753
No 95
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=95.52 E-value=0.13 Score=46.26 Aligned_cols=140 Identities=8% Similarity=-0.081 Sum_probs=81.4
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003251 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (836)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 480 (836)
.+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..+. +|.. ....+.. + +.+.-+..|+....+
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~----~~~~~~~~~~----~g~~--~~~~~~~--~--g~~~~~~~~~~~~~~ 71 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEV----ESLEVVAREG----ARTR--SRWVAVA--M--GKKVRWLEEEEWDDE 71 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTE----EEEEEEEEET----TEEE--EEEEEEE--T--TEEEEEEEEEEEETT
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccc----cEEEEEEeCC----CccE--EEEEEEe--C--CceEEEEEEEEEcCC
Confidence 34567778899999999999999998874 4456665432 2321 1111222 1 223334455544322
Q ss_pred CceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHHH
Q 003251 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVAT 560 (836)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWlat 560 (836)
+...+. . .+++ +. ..+.. -.-+++.++| |+|+|..+.+..-..+..++.+++..-+.=+.++.+..
T Consensus 72 ~~~i~~-~-~~~g----~~-~~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (147)
T 2d4r_A 72 NLRNRF-F-SPEG----DF-DRYEG------TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKG 137 (147)
T ss_dssp TTEEEE-E-EEEE----SC-SEEEE------EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEE-E-eccC----Ch-hheEE------EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322221 1 1121 10 00111 1335677888 99999988887644455566666655555678889999
Q ss_pred HHHHHHHH
Q 003251 561 LQRQCECL 568 (836)
Q Consensus 561 LqRqcerl 568 (836)
|.+.||..
T Consensus 138 lk~~~e~~ 145 (147)
T 2d4r_A 138 LEERVLAA 145 (147)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99888874
No 96
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=94.04 E-value=0.83 Score=47.99 Aligned_cols=181 Identities=17% Similarity=0.243 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCccC-cc-c-CchhhHHHHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEE
Q 003251 554 AQRWVATLQRQCECLAILMSTSVSARDH-TA-I-TAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVM 630 (836)
Q Consensus 554 A~rWlatLqRqcerla~~~~~~i~~~d~-~~-i-~~~Gr~sllkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~ 630 (836)
-||.-.++.|-==||.-- .|-+... .+ . .++-+.+=+.|+.-.+.+...- ....+|... . ..++|+|.
T Consensus 10 ~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l---~~~~gW~~~-~--~~~gv~Vy 80 (258)
T 3fo5_A 10 ERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKML---VAKDNWVLS-S--EISQVRLY 80 (258)
T ss_dssp CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHH---HTCSCCEEE-E--EETTEEEE
T ss_pred hhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhh---hccCCCEEE-e--cCCCeEEE
Confidence 356656665544444331 3322222 22 2 3466667777776666544432 246899976 3 25789999
Q ss_pred EecCCCCCCCCCceEEEEEEeeccccChhHHHHhhhccccchhhhhhcCCCCcceEeecccCCCCCceEEEEEeccC---
Q 003251 631 TRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI--- 707 (836)
Q Consensus 631 ~r~~~~~~g~p~G~VL~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~--- 707 (836)
++.. +| .++-+...-+++||+.||++|.|...|.+||...- ..+.+-+|. ..+.| .+....
T Consensus 81 ~~~~---~~-----~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~--~~~vle~id----~~~iv--Y~~~~p~~~ 144 (258)
T 3fo5_A 81 TLED---DK-----FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYR--SVELVQQVD----EDDAI--YHVTSPALG 144 (258)
T ss_dssp EEEC---SS-----CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCC--EEEEEEEEE----TTEEE--EEEEECCCT
T ss_pred EEEC---CC-----ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhcc--EEEEEEEcC----CCeEE--EEEecCCcc
Confidence 8642 22 34557777789999999999999999999997432 233444442 12333 343321
Q ss_pred CC-CCCceEEEEcccc-CCCCc-EEEE-eecchhhhhhhhcCCCCCCc--cccCCCcEEcCCC
Q 003251 708 NA-NQSSMLILQETCT-DAAGS-LVVY-APVDIPAMHVVMNGGDSAYV--ALLPSGFAIVPDG 764 (836)
Q Consensus 708 ~~-~~~~~liLQes~t-d~sgs-~vVy-APvD~~~m~~vm~G~ds~~v--~LLPSGF~I~Pdg 764 (836)
.. ...+..+|.-..+ +..|. +||- -.|+-+.+- .-+.+| ..+|+||.|-|.|
T Consensus 145 ~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~P-----p~~g~VR~~~~~sg~~I~P~~ 202 (258)
T 3fo5_A 145 GHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHR-----ETPEYRRGETLCSGFCLWREG 202 (258)
T ss_dssp TCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSC-----CCTTSEECCCSSEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCC-----CCCCCEEEEEcCcEEEEEECC
Confidence 11 2345555554223 23453 5543 345544321 123444 6899999999954
No 97
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=92.28 E-value=2.1 Score=41.38 Aligned_cols=142 Identities=8% Similarity=0.015 Sum_probs=80.9
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeec--ccccccccceeeEEeeec
Q 003251 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREVNFLRFCK 477 (836)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SPLvp~Re~~flRyck 477 (836)
..+.+|.-.+.++-+++-|.++|-+.||. |...+|++.+ |. .+.+.|. +---- .++-+..|+..
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~----~~~~~vl~~~------~~--~~~~rl~~~~~~~G--~~~~~ts~~~~ 71 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSE----YASVEVLGRD------DD--KVTFRLTMHPDADG--KVWSWVSERVA 71 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSS----EEEEEEEEEC------SS--EEEEEEEECCCTTS--CCCEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhC----ceEEEEEecC------CC--EEEEEEEEEeccCc--eEEEEEEEEEE
Confidence 45677888899999999999999999998 6778888754 11 2334433 32211 34444566643
Q ss_pred eecCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHH
Q 003251 478 QHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRW 557 (836)
Q Consensus 478 q~~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rW 557 (836)
. .++..+ +..+ +.++| | +.+=.-.-+.+.++ +|+|+|.-+.++++.....+ +.+...+-=..+.-
T Consensus 72 d-~~~~~I--~~~~--~~~gP----f---~~l~g~W~f~p~~~-gt~V~~~~df~~~~~~p~~~--~~~~~~~~~~~~~~ 136 (159)
T 3tl1_A 72 D-PVTRTV--RAQR--VETGP----F---QYMNIVWEYAETAE-GTVMRWTQDFAMKPDAPVDD--AWMTDNINRNSRTQ 136 (159)
T ss_dssp E-TTTTEE--EEEE--SSCTT----E---EEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCH--HHHHHHHHHHHHHH
T ss_pred c-CCCCEE--EEEE--ccCCC----h---hhccCEEEEEECCC-CEEEEEEEEEEecCCCCCCH--HHHHHHHHhhHHHH
Confidence 3 333222 2221 11223 2 23333445677777 59999999999976521111 00111111112334
Q ss_pred HHHHHHHHHHHHH
Q 003251 558 VATLQRQCECLAI 570 (836)
Q Consensus 558 latLqRqcerla~ 570 (836)
|+.|++.+|+.+.
T Consensus 137 L~~lK~~~E~~~~ 149 (159)
T 3tl1_A 137 MALIRDRIEQAAG 149 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh
Confidence 7778777777664
No 98
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=91.46 E-value=2.2 Score=41.05 Aligned_cols=145 Identities=14% Similarity=0.061 Sum_probs=83.5
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003251 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (836)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 479 (836)
..+.+|.-.+.++-+.+-|.+.|-+.+|. |..++|+..+.. + +.+++.+.-. ..++-|.-|+..+-
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~----~~~~~v~~~~~~----~----~~~~~~~~~~--G~~~~~~s~~~~~~ 73 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPP----TEKVEILEEGQG----Y----QVVRLHVDVA--GEINTWTSRRDLDP 73 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSS----EEEEEEEEEETT----E----EEEEEEEEET--TEEEEEEEEEEEET
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcc----cceEEEEecCCC----E----EEEEEEEecC--CEEEEEEEEEEEeC
Confidence 45667788899999999999999999999 567777764321 1 3344443222 22343444444333
Q ss_pred cCceEEEEEEecCCccCCCCCCCccceeecCCcce-EeecCCCccEEEEEEeeeeccccccccchhhhccc---------
Q 003251 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCV-VQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISG--------- 549 (836)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGcl-Iq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg--------- 549 (836)
++.. +.. ..++. +++ |. .+ .|.. +++.++|.|+|+|.-++++....+..++.++..-.
T Consensus 74 ~~~~-i~~-~~~~~--~gp----f~---~~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~ 141 (172)
T 3tfz_A 74 ARRV-IAY-RQLET--API----VG---HM-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAV 141 (172)
T ss_dssp TTTE-EEE-EEEEC--CTT----EE---EE-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHH
T ss_pred CCCE-EEE-EEeeC--CCC----hh---hc-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHH
Confidence 2222 111 11110 111 10 00 1222 56667789999999999998877777777654211
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 003251 550 MGFGAQRWVATLQRQCECLAI 570 (836)
Q Consensus 550 ~afGA~rWlatLqRqcerla~ 570 (836)
+.=+.+.-|+.|.+.+|+.+.
T Consensus 142 l~~~~~~~L~~lk~~aE~~~~ 162 (172)
T 3tfz_A 142 VERNSVADLNAVLGEAERRVR 162 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHh
Confidence 112233456667777776654
No 99
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=90.71 E-value=1 Score=41.91 Aligned_cols=141 Identities=15% Similarity=0.154 Sum_probs=83.9
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003251 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (836)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 479 (836)
+.+..|...+.++-+.+.|.+.|-+.+|.+ ..++|++.+..|. |. -+.+++.+-- -+.++-|..|+..+-
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~----~~~~v~~~~~~~g--~~--~~~~~~~~~~--~~~~~~~~~~v~~~~ 74 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWI----TGMRTWNGRVDGA--VS--TVDAEAQVGF--SFLREKFATRVRRDK 74 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSC----CCCCEEEEEEETT--EE--EEEEEEECST--TSSCCEEEEEEEEET
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCc----CeeEEEEecCCCC--Cc--eEEEEEEEEe--cceeEEEEEEEEEcC
Confidence 345677788999999999999999999984 5556665433211 11 2455665522 355666777887543
Q ss_pred cCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 003251 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 559 (836)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWla 559 (836)
.+ ..|.-..+++ +.. .+...++ +++.++| |+|++.-+.|.... ++..+...-+.-.+++.+.
T Consensus 75 ~~--~~i~~~~~~G----~f~-~~~g~w~------f~~~~~g-t~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~~ 136 (148)
T 1t17_A 75 DA--RSIDVSLLYG----PFK-RLNNGWR------FMPEGDA-TRVEFVIEFAFKSA----LLDAMLAANVDRAAGKLIA 136 (148)
T ss_dssp TT--CEEEEEESST----TSS-CEEEEEE------EEEETTE-EEEEEEEEECCSCH----HHHHHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEECCC----Chh-ccEEEEE------EEECCCC-eEEEEEEEEEECcH----HHHHHHHHHHHHHHHHHHH
Confidence 33 2233333442 210 0122333 3567778 99999988887522 3334443333345677778
Q ss_pred HHHHHHHHH
Q 003251 560 TLQRQCECL 568 (836)
Q Consensus 560 tLqRqcerl 568 (836)
++.+.|+.+
T Consensus 137 ~f~~r~~~~ 145 (148)
T 1t17_A 137 CFEARAQQL 145 (148)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777654
No 100
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=90.67 E-value=4 Score=39.82 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=80.2
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003251 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (836)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 479 (836)
..+.+|.-.+.++-+.+-|.++|-+.||. |...+|++.+. .-..+...+++..--. .++|..-|.+ .
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~----~~~~~~~~~~~------~~~~~~l~~~~~~~G~-~~~~ts~~~~--d 72 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSE----YAEAEILRQDG------DGFDFRLKTRPDANGR-VWEWVSHRVP--D 72 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTT----EEEEEEEEEET------TEEEEEEEECCCTTSC-CCEEEEEEEE--E
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhh----eeEEEEEecCC------CEEEEEEEEEecCCCe-EEEEEEEEEE--c
Confidence 45667777888999999999999999999 56677776432 1111222223332221 2233332322 1
Q ss_pred cCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 003251 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 559 (836)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWla 559 (836)
.++..+.... +.++| | +.+=.-.-+.+.++| |+|+|.-+.++++... +-.+.+...+.=..+..|+
T Consensus 73 ~~~~~I~~~~----l~~gP----f---~~~~g~W~f~p~~~g-t~V~~~~df~~~~~~p--~~~~~~~~av~~~~~~~L~ 138 (169)
T 3tvq_A 73 KGSRTVRAHR----VETGP----F---AYMNLHWTYRAVAGG-TEMRWVQEFDMKPGAP--FDNAHMTAHLNTTTRANME 138 (169)
T ss_dssp GGGTEEEEEE----SSCTT----E---EEEEEEEEEEEETTE-EEEEEEEEEEECTTCS--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEE----cCCCC----h---hheeeEEEEEECCCC-EEEEEEEEEEecCCCc--ccHHHHHHHHHhhHHHHHH
Confidence 2222221111 11122 2 223234557888888 9999999999875421 1111122222212345688
Q ss_pred HHHHHHHHHHHh
Q 003251 560 TLQRQCECLAIL 571 (836)
Q Consensus 560 tLqRqcerla~~ 571 (836)
.|++.+|+.+..
T Consensus 139 ~LK~~aE~~~~~ 150 (169)
T 3tvq_A 139 RIKKIIEDRHRE 150 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhh
Confidence 999999988763
No 101
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=90.40 E-value=3 Score=42.80 Aligned_cols=198 Identities=13% Similarity=0.162 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhcccccCCCCCceeccCCCCCCcEEEEEecCCCCCCCCCceEE-EEEEeeccc-cChhHHHHhhhccc
Q 003251 592 MLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVL-SAATSVWLP-VSPQRLFNFLRDER 669 (836)
Q Consensus 592 llkLaqRM~~~F~~~v~~s~~~~W~~l~~~~~~~dVrv~~r~~~~~~g~p~G~VL-~A~tS~wLp-v~p~~vf~FLrde~ 669 (836)
+-++.+..+..+-..+ ....+|... . ..++|+|..++..+ . |.++ .-++..-++ ++|+.||++|.|..
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~-~--~~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLV-V--EEGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEE-E--EETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEE-E--eCCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 4444444444444433 234689977 3 24679999998632 2 3321 123344456 99999999999999
Q ss_pred cchhhhhhcCCCCcceEeecccCCCCCceEEEEEeccC-CCCCCceEEEEccccC----CC---CcEEEEeecchhhhhh
Q 003251 670 LRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAI-NANQSSMLILQETCTD----AA---GSLVVYAPVDIPAMHV 741 (836)
Q Consensus 670 ~R~eWd~ls~G~~vqe~~~ia~g~~~gn~vsllr~~~~-~~~~~~~liLQes~td----~s---gs~vVyAPvD~~~m~~ 741 (836)
.|.+||...- .++.+-.| +.++.|--...... .-...+..++.....+ .. .-+++.-.|+-+.+-
T Consensus 98 ~r~~Wd~~~~--~~~vle~i----~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P- 170 (255)
T 2e3n_A 98 VRNDWETTIE--NFHVVETL----ADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAP- 170 (255)
T ss_dssp GHHHHCCSEE--EEEEEEEE----ETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSC-
T ss_pred hHhhhhhhcc--eeEEEEEc----CCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCC-
Confidence 9999996421 12222232 11222322223221 1234566666643322 22 233444456544321
Q ss_pred hhcCCCCCCcc-----ccCCCcEEcCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeeeecccCCCcccccchhH
Q 003251 742 VMNGGDSAYVA-----LLPSGFAIVPD-GP-DSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESV 814 (836)
Q Consensus 742 vm~G~ds~~v~-----LLPSGF~I~Pd-g~-~~~~~~~~~~~~~~~~~~~~~~~~gsllTvaFQil~~s~~~a~l~~~sv 814 (836)
..+.+|- .|.+||.|.|. |. .... ..++|.+|.-.|+=.... -+..+
T Consensus 171 ----~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~-----------------~~~~t~vt~~~~~Dp~G~-----iP~~l 224 (255)
T 2e3n_A 171 ----LNNRCVRAKINVAMICQTLVSPPEGNQEISR-----------------DNILCKITYVANVNPGGW-----APASV 224 (255)
T ss_dssp ----CCSSSEECEEEEEEEEEEEEC---CCCCCCG-----------------GGEEEEEEEEEEEECSSC-----CCHHH
T ss_pred ----CCCCCEEEEEEeeeeeeeEeccCCCCccccc-----------------CCCcEEEEEEEEeCCCCc-----cCHHH
Confidence 1122232 36789999883 22 1100 125788888877755432 22222
Q ss_pred H-h-HhhhhhHHHHHHHHHh
Q 003251 815 E-T-VNNLISCTVQKIKAAL 832 (836)
Q Consensus 815 ~-t-v~~li~~tv~~Ik~AL 832 (836)
. . +...+-.++++++.++
T Consensus 225 vn~~~~~~~~~~l~~L~k~v 244 (255)
T 2e3n_A 225 LRAVAKREYPKFLKRFTSYV 244 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccHHHHHHHHHH
Confidence 1 1 2333334666666544
No 102
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=84.32 E-value=0.32 Score=42.73 Aligned_cols=43 Identities=9% Similarity=0.233 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccch
Q 003251 139 HRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (836)
Q Consensus 139 trfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQN 184 (836)
.+||.++....-..+.... .....++|+.+|+++..|..|.+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 4688887766555553220 123668999999999999999743
No 103
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.22 E-value=0.29 Score=41.86 Aligned_cols=40 Identities=33% Similarity=0.417 Sum_probs=37.0
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccch
Q 003251 145 QIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQN 184 (836)
Q Consensus 145 Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQN 184 (836)
-.+.|+++|+..+.+.......|+.+..|+..|||-||--
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3478999999999999999999999999999999999953
No 104
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=83.45 E-value=11 Score=35.75 Aligned_cols=140 Identities=14% Similarity=0.043 Sum_probs=80.8
Q ss_pred eceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeecee
Q 003251 400 RETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQH 479 (836)
Q Consensus 400 R~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~ 479 (836)
..+.+|.-.+.++-+.+.|.++|...||..+.- +-.. +|..+.+.+++.+-. ...|+-|..||...-
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~----~~~~-------~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~ 76 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKL----VDLG-------NNAYRWEMEKVGVDK--HAIQSVYACTYHADK 76 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEE----EEEE-------TTEEEEEECCBSSGG--GCBCCEEEEEEEEET
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEE----EEcC-------CCceEEEEEEEeeee--EEEEEEEEEEEEEcC
Confidence 346678889999999999999999999986553 1111 233444555665533 234888899987654
Q ss_pred cCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhhccchhHHHHHHHH
Q 003251 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVA 559 (836)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~~Sg~afGA~rWla 559 (836)
++. .+ +..+. +++ +. +.+-.-.-+++.++|.|+|+|.-+.|.. -.+..++..+...-+--.+++-+.
T Consensus 77 ~~~-~I--~~~~~---~g~----~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~ 143 (161)
T 3p9v_A 77 EAG-KI--TWSPI---KGE----GN--GVVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVD 143 (161)
T ss_dssp TTT-EE--EEEEC---TTS----TT--EEEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCC-EE--EEEEe---cCc----cc--eeEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHH
Confidence 333 22 22221 122 10 1111123357778888999999888886 123334443332222333566666
Q ss_pred HHHHHH
Q 003251 560 TLQRQC 565 (836)
Q Consensus 560 tLqRqc 565 (836)
+..+-+
T Consensus 144 af~~ra 149 (161)
T 3p9v_A 144 TYMANL 149 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 105
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=76.66 E-value=47 Score=30.68 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=63.7
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeE--Eeeecee
Q 003251 402 TGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNF--LRFCKQH 479 (836)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~f--lRyckq~ 479 (836)
+..|...+.++-+.|.|.+.|.+-+|.+ ..++++..| . ....+.+. +-+.+.-+. ++|...-
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~----~~~~~~~~~-------~---~~~~~~~~--~g~~~~~~~~~~~~~~~~ 71 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGC----KSLELIGED-------K---YKADLQIG--IAAVKGKYDAIIEVTDIK 71 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTE----EEEEEEETT-------E---EEEEEEEC--CGGGCEEEEEEEEEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCc----eEeEEeCCC-------e---EEEEEEEE--eeeEEEEEEEEEEEEecC
Confidence 4567778999999999999999998874 566666421 1 12222221 112222222 2444434
Q ss_pred cCceEEEEEEecCCccCCCCCCCccceeecCCcceEeecCCCccEEEEEEeeeeccccccccchhhh
Q 003251 480 AEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLI 546 (836)
Q Consensus 480 ~~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~lyrpl~ 546 (836)
....|++.-..-+. .+ +.+. =--+-+.+..+|.|+|+|.-.+++... +..+..+++
T Consensus 72 ~~~~~~~~~~~~~~---~~----~~~~---~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 72 PPYHYKLLVNGEGG---PG----FVNA---EGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp TTTEEEEEEEEEET---TE----EEEE---EEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHH
T ss_pred CCcEEEEEEEecCC---Cc----cEEE---EEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHH
Confidence 44555544333221 00 1111 111335666778899999877776433 344555555
No 106
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.34 E-value=3.3 Score=36.33 Aligned_cols=52 Identities=29% Similarity=0.479 Sum_probs=30.8
Q ss_pred hhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH----HHhHHhhc
Q 003251 198 NSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD----RVCALAGK 263 (836)
Q Consensus 198 ~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~----r~~~~~~~ 263 (836)
-..++-+++.|+.+|..+.+... +.......|..||.+||+|.. |++++.+|
T Consensus 22 I~lLqmEieELKekN~~L~~e~~--------------e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQ--------------NAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555554432 011133458899999999985 66666655
No 107
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=67.46 E-value=2 Score=45.07 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=10.9
Q ss_pred hhhhhHhhhhhhHHHH
Q 003251 239 EEQHLRIENARLKDEL 254 (836)
Q Consensus 239 ~~q~L~~ENa~Lk~el 254 (836)
+.++|+.||++||+.|
T Consensus 44 ~~~~l~~En~rLr~lL 59 (255)
T 2j5u_A 44 EVADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445777888887755
No 108
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=64.36 E-value=12 Score=31.10 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=31.3
Q ss_pred HHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHH
Q 003251 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELD 255 (836)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~ 255 (836)
++.....+..+.+.|..+|..|+..+ ..|..|+..||+-|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i---------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERA---------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 45566778888899999998888744 468888888887653
No 109
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=59.11 E-value=16 Score=32.67 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=42.9
Q ss_pred cccceeeeeccchhhhHHHHHHHHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhH
Q 003251 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (836)
Q Consensus 172 gLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk 251 (836)
||+..+|.-|=|-||+-.=|.........--++...|..++..+.. +.++|+.||++++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 6777777777666665544444444444444555666666665553 5567888999999
Q ss_pred HHHHHHhH
Q 003251 252 DELDRVCA 259 (836)
Q Consensus 252 ~el~r~~~ 259 (836)
.|++.+..
T Consensus 76 ~e~d~~k~ 83 (90)
T 2wt7_B 76 RERDAYKV 83 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887654
No 110
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=56.34 E-value=17 Score=32.31 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=11.1
Q ss_pred hHHHHHhHHHHHhhhhHHh
Q 003251 199 SLLRQENDKLRAENMSIRD 217 (836)
Q Consensus 199 ~~l~~en~~L~~en~~l~e 217 (836)
..+..+.+.|..||..|+.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~ 57 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQK 57 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3355566666666665554
No 111
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.09 E-value=25 Score=28.66 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=28.9
Q ss_pred HHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHH
Q 003251 194 ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDEL 254 (836)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el 254 (836)
+......+..+.+.|..+|..|... ...|+.|+..|+..|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~---------------------i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSE---------------------VTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 4445667888888888888888863 346777888777754
No 112
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=48.65 E-value=25 Score=30.59 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=7.8
Q ss_pred HHHHhHHHHHhhhhHH
Q 003251 201 LRQENDKLRAENMSIR 216 (836)
Q Consensus 201 l~~en~~L~~en~~l~ 216 (836)
+....+.|..||..|+
T Consensus 41 ~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 41 TQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555554444
No 113
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=43.43 E-value=13 Score=25.55 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=14.6
Q ss_pred hhhHhhhhhhHHHHHHHh
Q 003251 241 QHLRIENARLKDELDRVC 258 (836)
Q Consensus 241 q~L~~ENa~Lk~el~r~~ 258 (836)
++|...|+|||+|+.-+.
T Consensus 3 rrlkqknarlkqeiaale 20 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALE 20 (28)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHH
Confidence 468889999999986554
No 114
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=42.23 E-value=99 Score=29.53 Aligned_cols=112 Identities=12% Similarity=0.163 Sum_probs=61.1
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003251 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (836)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 480 (836)
.+..|...+.++-++|.|-..| +-+|.++..+ +++ .|.+++.-|++..+ . . ..+| .++.|-...-
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~---e~~-eg~~~~~vGsvR~~--g----g---~v~E-rl~~~D~~~~ 70 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSC---KKV-GGGGGYSVGARRLL--N----G---EFLD-TLIAYSEIER 70 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCE---EEE-SSCCTTCTTCEEEE--T----T---TEEE-EEEEEETTTT
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEE---EEE-ecCCCCCCCCEEEE--C----C---EEEE-EEEEEcCCCc
Confidence 4456677889999999999999 9999885533 333 34444445787765 1 1 2233 3333321111
Q ss_pred CceEEEEEEecCCccCCCCCCCccceeecCCcceEeecC-CCccEEEEEEeeeecc
Q 003251 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDE 535 (836)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~-nG~skVtwVeH~e~d~ 535 (836)
-=+|-|++-.+-. .. . ..+..=+=.-+.+.+ +|.|.|+|--.++..+
T Consensus 71 ~~sY~ii~g~l~~---~~--~---~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~~~ 118 (160)
T 3p51_A 71 RIMYSMDEGPSPV---SS--G---EIYNYVGNLHLLPVTIDDTTFVEWSGSWESAS 118 (160)
T ss_dssp EEEEEEEECSTTS---ST--T---TEEEEEEEEEEEEETTTTEEEEEEEEEEEESC
T ss_pred EEEEEEecCCCcc---cc--c---ceeEEEEEEEEEEecCCCCEEEEEEEEEEeCH
Confidence 1145555521100 00 0 011111222245555 7899999998888764
No 115
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=40.86 E-value=17 Score=35.05 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=27.8
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 003251 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
+...|+-+..||+.||+|++|...-.+|.-
T Consensus 28 ~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 28 SRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred ceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 568899999999999999999999999985
No 116
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.74 E-value=36 Score=27.87 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=15.7
Q ss_pred HHhhhhHHHHHhHHHHHhhhhHHh
Q 003251 194 ERHENSLLRQENDKLRAENMSIRD 217 (836)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~e 217 (836)
+......|..+.+.|..+|..|..
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455567777777777777765
No 117
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=37.85 E-value=5.5 Score=36.72 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=35.5
Q ss_pred cccceeeeeccchhhhHHHHHHHHhhhhHHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhH
Q 003251 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLK 251 (836)
Q Consensus 172 gLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk 251 (836)
||++.+|.-.=|-||.-.=|...+.....-.++.+.|..++..+. .+.++|..||+.|+
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~---------------------~e~e~L~~En~~l~ 85 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQ---------------------QEVEKLASENASMK 85 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------------------STTTTTTSTTSHHH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 566655554444444433333333333333444455555443333 35667888999999
Q ss_pred HHHHHHh
Q 003251 252 DELDRVC 258 (836)
Q Consensus 252 ~el~r~~ 258 (836)
.|++++.
T Consensus 86 ~E~~~lk 92 (107)
T 3a5t_A 86 LELDALR 92 (107)
T ss_dssp HTTTSSS
T ss_pred HHHHHHH
Confidence 8887644
No 118
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.34 E-value=26 Score=31.53 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCc
Q 003251 221 NPICTNCGGPAI 232 (836)
Q Consensus 221 ~~~C~~Cggp~~ 232 (836)
...||-||.+..
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 457999998754
No 119
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.95 E-value=59 Score=27.63 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=5.6
Q ss_pred hhhhhhHHHHHHH
Q 003251 245 IENARLKDELDRV 257 (836)
Q Consensus 245 ~ENa~Lk~el~r~ 257 (836)
.||..|++++..+
T Consensus 50 ~en~~Lr~~i~~L 62 (70)
T 1gd2_E 50 LENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 120
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=35.72 E-value=15 Score=32.42 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=25.0
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 003251 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
..+..++.||+.||++|.|..+..+|.-
T Consensus 5 ~~~~~i~ap~~~V~~~l~d~~~~~~w~p 32 (147)
T 2d4r_A 5 RAERYIPAPPERVYRLAKDLEGLKPYLK 32 (147)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHGGGCT
T ss_pred EEEEEeCCCHHHHHHHHhChhhhhhhcc
Confidence 4678899999999999999999999963
No 121
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=35.10 E-value=16 Score=29.05 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccc
Q 003251 138 YHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQ 183 (836)
Q Consensus 138 RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQ 183 (836)
|..|++++.......+... ........++|+++|+++.+|..|.+
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 3468888877775555433 22122256899999999999999964
No 122
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=33.83 E-value=18 Score=31.07 Aligned_cols=43 Identities=9% Similarity=0.247 Sum_probs=30.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeecc
Q 003251 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWF 182 (836)
Q Consensus 135 rr~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWF 182 (836)
|+.+..|+.++....-..+... ....++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-----~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-----ESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHCcCHHHHHHHH
Confidence 4455678998866555556432 135688999999999999885
No 123
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=33.73 E-value=23 Score=32.00 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhH
Q 003251 137 RYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQ 188 (836)
Q Consensus 137 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK 188 (836)
+|.+||.++...+-..+.+..... ..++|+++|++...|.-|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 456799999888777775554443 3368999999999999997665543
No 124
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=33.42 E-value=2.7e+02 Score=25.02 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=23.4
Q ss_pred eeEEEechhhHHHHhcChhhhhhhcccc
Q 003251 402 TGMVIINSLALVETLMDPNRWAEMFPCM 429 (836)
Q Consensus 402 ~g~V~~~~~~LVe~lmD~~~W~~~Fp~i 429 (836)
+..|...+.++-+.|.|.+.|.+-+|.+
T Consensus 18 ~~~i~ap~e~Vw~~l~D~~~~~~w~p~~ 45 (157)
T 2ns9_A 18 SFEVSKTPEEVFEFLTDPKRFSRAFPGF 45 (157)
T ss_dssp EEEESSCHHHHHHHHTCHHHHGGGSTTE
T ss_pred EEEEcCCHHHHHHHHcCHHHHHhhCCCc
Confidence 3456667889999999999999999974
No 125
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=31.30 E-value=18 Score=33.71 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.3
Q ss_pred EEEeeccccChhHHHHhhhccccchhhh
Q 003251 648 AATSVWLPVSPQRLFNFLRDERLRSEWD 675 (836)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eWd 675 (836)
-..++.++.||++||++|.|..+..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467889999999999999999999996
No 126
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=30.80 E-value=3.2e+02 Score=25.12 Aligned_cols=116 Identities=8% Similarity=-0.062 Sum_probs=58.7
Q ss_pred ceeEEEechhhHHHHhcChhhhhhhcccccccceEEEEeeCCCCCCCCCceEEeeeeecccccccccceeeEEeeeceec
Q 003251 401 ETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHA 480 (836)
Q Consensus 401 ~~g~V~~~~~~LVe~lmD~~~W~~~Fp~iVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLvp~Re~~flRyckq~~ 480 (836)
.+.+|...+.++-+.+.|.+.|-+.+|.+ ..++++.. +.. -+.+++ |.=+.+.-+..||+....
T Consensus 8 ~s~~I~ap~e~V~~~~~D~e~~p~w~p~~----~~v~~~~~-------~~~-~~~~~~----~~G~~~~~~~~~v~e~~p 71 (155)
T 3ggn_A 8 DAVTIGKPAEQLYAVWRDLPGLPLLMTHL----RSVEVLDD-------KRS-RWTVEA----PAPLGTVSWEAELTADEP 71 (155)
T ss_dssp EEEEESSCHHHHHHHHHCGGGHHHHSTTC----CEEEECSS-------SEE-EEEEEC----CTTTCEEEEEEEEEEEET
T ss_pred EEEEEcCCHHHHHHHHhCHHHhHHHhhhc----eEEEEecC-------Cee-EEEEEe----cCCcceEEEEEEEEEecC
Confidence 45667788899999999999999998874 45666642 111 122222 221244455677776554
Q ss_pred CceEEEEEEecCCccCCCCCCCccceeecCCcceEeecC-CCccEEEEEEeeeeccccccccchhh
Q 003251 481 EGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMP-NGYSKVTWVEHAEYDESQVHQLYKPL 545 (836)
Q Consensus 481 ~g~waVvDvSld~~~~~~~~~~~~~~~r~PSGclIq~~~-nG~skVtwVeH~e~d~~~v~~lyrpl 545 (836)
+-.. +-.++++.. .. .... +-.++.+ +|.|+|++.-+.+....-+-.++-++
T Consensus 72 ~~~i--~~~~~~g~~----~~-~~g~------~~F~~~~~~~gT~V~~~~~~~~~~~~l~~~~~~~ 124 (155)
T 3ggn_A 72 GKRI--AWRSLPGAR----IE-NSGE------VLFRPAPGARGTEVVVRLTYRPPGGSAGAVIARM 124 (155)
T ss_dssp TTEE--EEEECTTCS----SC-EEEE------EEEEECSSSSCEEEEEEEEEC-------------
T ss_pred CCEE--EEEECCCCC----cc-eEEE------EEEEECCCCCceEEEEEEEEECCCcHHHHHHHHH
Confidence 4432 233344310 00 1111 2246674 56899999776665432333443333
No 127
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=30.72 E-value=20 Score=32.77 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=26.3
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhh
Q 003251 647 SAATSVWLPVSPQRLFNFLRDERLRSEWD 675 (836)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd 675 (836)
....+..++.||++||++|.|..+..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 45678899999999999999999999996
No 128
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.41 E-value=30 Score=29.65 Aligned_cols=49 Identities=8% Similarity=0.118 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.+++.|...|.-.|-.. ..-.++|+.+|++...|+.+...-|.|.|+..
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47778888887755333 23578999999999999988766666655443
No 129
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.74 E-value=1.3e+02 Score=24.58 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=18.0
Q ss_pred HHhhhhHHHHHhHHHHHhhhhHHhhh
Q 003251 194 ERHENSLLRQENDKLRAENMSIRDAM 219 (836)
Q Consensus 194 ~r~e~~~l~~en~~L~~en~~l~ea~ 219 (836)
+......|..+.+.|..+|..|+..+
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777888888887777643
No 130
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.38 E-value=1.2e+02 Score=23.42 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=15.0
Q ss_pred hhhhhHhhhhhhHHHHHHHhHH
Q 003251 239 EEQHLRIENARLKDELDRVCAL 260 (836)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~~~ 260 (836)
++|.|..--+.|++|+.|+...
T Consensus 25 deqnlekiianlrdeiarlene 46 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHH
Confidence 5666665667788888877653
No 131
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=28.27 E-value=16 Score=27.05 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhh
Q 003251 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRT 187 (836)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRa 187 (836)
.++.++...+...+... ....++|+.+|++...|..|++....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 35666666665555543 23568999999999999999865443
No 132
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=27.39 E-value=32 Score=32.19 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=26.5
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 003251 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
....|+.++.|++.||+|+.|..+-.+|--
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~p 34 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLMT 34 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHST
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHhh
Confidence 346788899999999999999999999963
No 133
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=26.57 E-value=1 Score=40.09 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhhhcC--CCCCH-HHHHHHHHhhcccceeeeecc
Q 003251 139 HRHTPQQIQELESLFKEC--PHPDE-KQRLELSKRLCLETRQVKFWF 182 (836)
Q Consensus 139 trfT~~Ql~~LE~~F~~~--~~Ps~-~~R~eLA~~LgLs~rQVkvWF 182 (836)
.+||.++....-..+... .|++. ....++|+++|+++.+|..|.
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHH
Confidence 468888876554444322 13332 456789999999999998885
No 134
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=26.35 E-value=29 Score=31.87 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=25.2
Q ss_pred EEeeccccChhHHHHhhhccccchhhhh
Q 003251 649 ATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
..|..++.||+.||+++.|-.+..+|--
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p 32 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVP 32 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCS
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCC
Confidence 4688999999999999999999999964
No 135
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=26.34 E-value=56 Score=29.59 Aligned_cols=49 Identities=31% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHhHHHHHhhhhHHh-------hhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHH
Q 003251 191 TQLERHENSLLRQENDKLRAENMSIRD-------AMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDE 253 (836)
Q Consensus 191 kk~~r~e~~~l~~en~~L~~en~~l~e-------a~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~e 253 (836)
|+..-+++-.|....+++..||.+++. .+. +...+..+|+.||.+|++|
T Consensus 32 KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~--------------eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 32 KQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVR--------------ELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHH--------------HHHHHHHHHHHHHHHHHHH
No 136
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=26.20 E-value=38 Score=30.26 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=24.8
Q ss_pred EEEeeccccChhHHHHhhhccccchhh
Q 003251 648 AATSVWLPVSPQRLFNFLRDERLRSEW 674 (836)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eW 674 (836)
...+..++.||++||++|.|..+..+|
T Consensus 7 i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 7 AQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 457788999999999999999999999
No 137
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=25.52 E-value=53 Score=24.10 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.8
Q ss_pred hhhhHhhhhhhHHHHHHHhHHh
Q 003251 240 EQHLRIENARLKDELDRVCALA 261 (836)
Q Consensus 240 ~q~L~~ENa~Lk~el~r~~~~~ 261 (836)
...|..+|..|++|+.|+..+.
T Consensus 9 VEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 9 VEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh
Confidence 3468899999999999998875
No 138
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=24.25 E-value=41 Score=30.38 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=24.3
Q ss_pred EEeeccccChhHHHHhhhccccchhhh
Q 003251 649 ATSVWLPVSPQRLFNFLRDERLRSEWD 675 (836)
Q Consensus 649 ~tS~wLpv~p~~vf~FLrde~~R~eWd 675 (836)
..+..++.||++||+.|-|..+..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 467788999999999999999999994
No 139
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=23.70 E-value=1.3e+02 Score=24.15 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=25.9
Q ss_pred HHHHHhHHHHHhhhhHHhhhcCCCCCCCCCCCccCCCChhhhhhHhhhhhhHHHHHHHh
Q 003251 200 LLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVC 258 (836)
Q Consensus 200 ~l~~en~~L~~en~~l~ea~~~~~C~~Cggp~~~~~~~~~~q~L~~ENa~Lk~el~r~~ 258 (836)
.++.++..|.+.|..|.+++. .-+.|-..|++|++++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~---------------------~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLK---------------------EARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhh
Confidence 356667777777777776553 34566778888888763
No 140
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.33 E-value=63 Score=33.88 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.1
Q ss_pred hhhHhhhhhhHHHHHHHhH
Q 003251 241 QHLRIENARLKDELDRVCA 259 (836)
Q Consensus 241 q~L~~ENa~Lk~el~r~~~ 259 (836)
++++.|..+||+|++++..
T Consensus 78 k~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 78 KEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 3577788999999998763
No 141
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.23 E-value=3.1 Score=40.28 Aligned_cols=31 Identities=3% Similarity=-0.087 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHH
Q 003251 132 PPRKKRYHRHTPQQIQELESLFKECPHPDEK 162 (836)
Q Consensus 132 ~kkrr~RtrfT~~Ql~~LE~~F~~~~~Ps~~ 162 (836)
.+.||.|+.|+..|++.|++.|+.++||...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 3456778899999999999999999999754
No 142
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=23.11 E-value=43 Score=30.68 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=24.6
Q ss_pred EEEeeccccChhHHHHhhhccccchhhh
Q 003251 648 AATSVWLPVSPQRLFNFLRDERLRSEWD 675 (836)
Q Consensus 648 A~tS~wLpv~p~~vf~FLrde~~R~eWd 675 (836)
-..+.-++.||++||+.|-|+.+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456788999999999999999999994
No 143
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.79 E-value=80 Score=28.62 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.+++.|...+...|... ..-.++|+.+|+++..|+.|.+.-|.+.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47888888888775433 23578999999999999999887776666544
No 144
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.39 E-value=41 Score=31.32 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=28.3
Q ss_pred cccceeeeeccchhhhHHHHHHHHhhhhHHHHHhHHHHHhhhhHHhhhc
Q 003251 172 CLETRQVKFWFQNRRTQMKTQLERHENSLLRQENDKLRAENMSIRDAMR 220 (836)
Q Consensus 172 gLs~rQVkvWFQNRRaK~Kkk~~r~e~~~l~~en~~L~~en~~l~ea~~ 220 (836)
+|.....+.|-+|+-...-+....++...-+...++|+.|...+.+.+.
T Consensus 40 ~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 40 GFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566777788755544444444444445556666666666665443
No 145
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.17 E-value=1e+02 Score=24.80 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=6.9
Q ss_pred hhhhHhhhhhhHHHHH
Q 003251 240 EQHLRIENARLKDELD 255 (836)
Q Consensus 240 ~q~L~~ENa~Lk~el~ 255 (836)
...|+.||+.||.++.
T Consensus 21 ~eaLk~E~~eLk~k~~ 36 (53)
T 2yy0_A 21 IELLRLELAEMKEKYE 36 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 146
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.73 E-value=1.4e+02 Score=26.30 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=14.7
Q ss_pred hhHhhhhhhHHHHHHHhHHhh
Q 003251 242 HLRIENARLKDELDRVCALAG 262 (836)
Q Consensus 242 ~L~~ENa~Lk~el~r~~~~~~ 262 (836)
.|..|++.||++++++..+|.
T Consensus 57 ~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 57 QKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366677777877777776653
No 147
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=21.45 E-value=51 Score=31.35 Aligned_cols=30 Identities=10% Similarity=0.021 Sum_probs=26.7
Q ss_pred EEEEeeccccChhHHHHhhhccccchhhhh
Q 003251 647 SAATSVWLPVSPQRLFNFLRDERLRSEWDI 676 (836)
Q Consensus 647 ~A~tS~wLpv~p~~vf~FLrde~~R~eWd~ 676 (836)
....|+.++.||+.||+++.|-....+|--
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~P 35 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIFP 35 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHCS
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhCc
Confidence 456789999999999999999999999953
No 148
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=21.07 E-value=57 Score=29.63 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHH
Q 003251 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQL 193 (836)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~ 193 (836)
.+++.|...+. .|-. ...-.++|+.+|+++..|+.+.+.=|.|.|+..
T Consensus 109 ~L~~~~r~v~~-~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-----GYSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTT-----TCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 46777777777 3322 224678999999999999888765555555433
No 149
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.53 E-value=2.4e+02 Score=24.86 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=8.7
Q ss_pred hhHhhhhhhHHHHHHHh
Q 003251 242 HLRIENARLKDELDRVC 258 (836)
Q Consensus 242 ~L~~ENa~Lk~el~r~~ 258 (836)
.|..||+.|+.+++.+.
T Consensus 47 ~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 47 ELTAENERLQKKVEQLS 63 (87)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555554443
No 150
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=20.22 E-value=67 Score=25.72 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=0.0
Q ss_pred hhhhhHhhhhhhHHHHHHHhHHhhcc
Q 003251 239 EEQHLRIENARLKDELDRVCALAGKF 264 (836)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r~~~~~~~~ 264 (836)
+..-|+.||..||+||+.-+....|+
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHH
No 151
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.08 E-value=98 Score=27.89 Aligned_cols=50 Identities=14% Similarity=0.041 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHHhhcccceeeeeccchhhhHHHHHHH
Q 003251 140 RHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLE 194 (836)
Q Consensus 140 rfT~~Ql~~LE~~F~~~~~Ps~~~R~eLA~~LgLs~rQVkvWFQNRRaK~Kkk~~ 194 (836)
.+++.|...+...|... ..-.++|+.+|+++..|+.+...-|.+.|+...
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 74 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK 74 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 47788888887765433 235789999999999999988777766665443
No 152
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.05 E-value=1.4e+02 Score=25.41 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=10.7
Q ss_pred hhhhhHhhhhhhHHHHHH
Q 003251 239 EEQHLRIENARLKDELDR 256 (836)
Q Consensus 239 ~~q~L~~ENa~Lk~el~r 256 (836)
+.+.|+.++..|..|+..
T Consensus 51 en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 51 ENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566666666666653
Done!