BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003253
(836 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 191/307 (62%), Gaps = 22/307 (7%)
Query: 519 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 578
L+ + I + V FDDI + K L+E+V+LP RPELF L P +G+LLFGPP
Sbjct: 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTG--LRAPARGLLLFGPP 157
Query: 579 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 638
G GKTMLAKAVA E+ A F NIS +S+TSK+ GEGEK V+A+F++A ++ PS+IF+D+VD
Sbjct: 158 GNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVD 217
Query: 639 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 698
S+L R GEH+A R++K EF++ +DG+++ +R+LV+ ATNRP +LDEAV+RR +R
Sbjct: 218 SLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKR 276
Query: 699 LMVNLPDAPNRAKILQVILAKEDLSP--DVDFDAIANMTDGYSGSDLKNLCVTAAHRPIX 756
+ V+LP+ R +L+ +L K+ SP + +A MTDGYSGSDL L AA PI
Sbjct: 277 VYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIR 335
Query: 757 XXXXXXXXXXXXXXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQ 816
+++R + + DF + +++ SVS ++ + ++
Sbjct: 336 ELKPEQVKNM--------------SASEMRNIRLSDFTESLKKIKRSVSPQT--LEAYIR 379
Query: 817 WNELYGE 823
WN+ +G+
Sbjct: 380 WNKDFGD 386
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 180/295 (61%), Gaps = 20/295 (6%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V ++DI +E K T+KE+V+ P+ RP++F L P KGILLFGPPGTGKT++ K +A
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIA 138
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
+++GA F +IS SS+TSKW GEGEK V+A+F++A P+VIF+DE+DS+L +R + GEH
Sbjct: 139 SQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEH 197
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRA 710
E+ R++K EF+V DG T +RILV+ ATNRP ++DEA RRL +RL + LP+A R
Sbjct: 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARK 257
Query: 711 KILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXXX 769
+I+ +++KE + + + I +D +SG+D+ LC A+ PI
Sbjct: 258 QIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPD 317
Query: 770 XXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEG 824
+RP+ DF+ A V SVS + + + E WN+ +G G
Sbjct: 318 --------------QVRPIAYIDFENAFRTVRPSVSPKDLELYE--NWNKTFGCG 356
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 219 bits (557), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 187/311 (60%), Gaps = 27/311 (8%)
Query: 518 RLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 577
+L+ D I V + DI + K L+E+V+LP RPELF L P KG+LLFGP
Sbjct: 5 QLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTG--LRAPAKGLLLFGP 62
Query: 578 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEV 637
PG GKT+LA+AVATE A F+NIS +S+TSK+ G+GEK V+A+F++A + PS+IF+DEV
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 638 DSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDTERILVLAATNRPFDLDEAVIRRLP 696
DS+L R + EHEA R++K EF+V +DGL D +RI+VLAATNRP +LDEA +RR
Sbjct: 123 DSLLSERSS-SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT 181
Query: 697 RRLMVNLPDAPNRAKILQVILAKEDLSPDVD-FDAIANMTDGYSGSDLKNLCVTAAHRPI 755
+R+ V+LPD R +L +L K+ D + +A +TDGYSGSDL L AA PI
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241
Query: 756 XXXXXXXXXXXXXXXXXXXXXXXLSGCADI---RPLNMDDFKYAHERVCASVSSESVNMS 812
C DI R + DF + +R+ SV+ +S+N
Sbjct: 242 RELNVEQVK-----------------CLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSY 284
Query: 813 ELLQWNELYGE 823
E +W++ YG+
Sbjct: 285 E--KWSQDYGD 293
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 148/232 (63%), Gaps = 17/232 (7%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 105
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
TEA + F ++S S + SKW GE EK VK +F++A + PS+IF+D+VD++ G R GE
Sbjct: 106 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 164
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRA 710
EA R++K E +V +G+ D++ +LVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 165 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 223
Query: 711 KILQV-------ILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 755
+ ++ +L KE D+ + MT+GYSGSD+ + A +PI
Sbjct: 224 TMFEINVGDTPSVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQPI 269
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 148/232 (63%), Gaps = 17/232 (7%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 24 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 81
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
TEA + F ++S S + SKW GE EK VK +F++A + PS+IF+DEVD++ G R GE
Sbjct: 82 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTR-GEGES 140
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRA 710
EA R++K E +V +G+ D++ +LVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 141 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 199
Query: 711 KILQV-------ILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 755
+ ++ +L KE D+ + MT+GYSGSD+ + A +PI
Sbjct: 200 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQPI 245
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 193 bits (490), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 148/232 (63%), Gaps = 17/232 (7%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 33 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 90
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
TEA + F ++S S + SKW GE EK VK +F++A + PS+IF+D+VD++ G R GE
Sbjct: 91 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 149
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRA 710
EA R++K E +V +G+ D++ +LVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 150 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 208
Query: 711 KILQV-------ILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 755
+ ++ +L KE D+ + MT+GYSGSD+ + A +PI
Sbjct: 209 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQPI 254
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 148/232 (63%), Gaps = 17/232 (7%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V ++D+ LE K+ LKE V+LP++ P LF KG KP GILL+GPPGTGK+ LAKAVA
Sbjct: 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGN-RKPTSGILLYGPPGTGKSYLAKAVA 72
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
TEA + F ++S S + SKW GE EK VK +F++A + PS+IF+D+VD++ G R GE
Sbjct: 73 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR-GEGES 131
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRA 710
EA R++K E +V +G+ D++ +LVL ATN P+ LD A+ RR RR+ + LPD R
Sbjct: 132 EASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAART 190
Query: 711 KILQV-------ILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 755
+ ++ +L KE D+ + MT+GYSGSD+ + A +PI
Sbjct: 191 TMFEINVGDTPCVLTKE------DYRTLGAMTEGYSGSDIAVVVKDALMQPI 236
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 146/227 (64%), Gaps = 6/227 (2%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V + D+ LE K+ LKE V+LP++ P LF G+ T P +GILLFGPPGTGK+ LAKAVA
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRT-PWRGILLFGPPGTGKSYLAKAVA 188
Query: 591 TEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 649
TEA + F +IS S + SKW GE EK VK +F LA + PS+IF+DE+DS+ G R + E
Sbjct: 189 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR-SENE 247
Query: 650 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNR 709
EA R++K EF+V G+ D + ILVL ATN P+ LD A+ RR +R+ + LP+A R
Sbjct: 248 SEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHAR 306
Query: 710 AKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 755
A + ++ L S + DF + TDGYSG+D+ + A +P+
Sbjct: 307 AAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPV 353
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 186 bits (472), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 144/227 (63%), Gaps = 6/227 (2%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V + D+ LE K+ LKE V+LP++ P LF G+ T P +GILLFGPPGTGK+ LAKAVA
Sbjct: 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRT-PWRGILLFGPPGTGKSYLAKAVA 66
Query: 591 TEAG-ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 649
TEA + F +IS S + SKW GE EK VK +F LA + PS+IF+DE+DS+ G R E
Sbjct: 67 TEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NE 125
Query: 650 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNR 709
EA R++K EF+V G+ D + ILVL ATN P+ LD A+ RR +R+ + LP+ R
Sbjct: 126 SEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHAR 184
Query: 710 AKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 755
A + ++ L S + DF + TDGYSG+D+ + A +P+
Sbjct: 185 AAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPV 231
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 140/224 (62%), Gaps = 7/224 (3%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR--ENPG 648
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 649 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDA 706
A ++ N+ + DG+ TK + + ++ ATNRP +D A++R RL + + + LPD
Sbjct: 593 GGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 707 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 750
+R IL+ L K ++ DVD + +A MT+G+SG+DL +C A
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 160/301 (53%), Gaps = 15/301 (4%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THG 318
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 708
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 709 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXX 768
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 769 XXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRR 828
++ MDDF++A + S E+V + W ++ G +R
Sbjct: 437 IDAEVMNSLAVT---------MDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487
Query: 829 K 829
+
Sbjct: 488 E 488
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 176 bits (445), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 140/224 (62%), Gaps = 7/224 (3%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 532
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR--ENPG 648
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 533 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592
Query: 649 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDA 706
A ++ N+ + DG+ TK + + ++ ATNRP +D A++R RL + + + LPD
Sbjct: 593 GGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 707 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 750
+R IL+ L K ++ DVD + +A MT+G+SG+DL +C A
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 160/301 (53%), Gaps = 15/301 (4%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V +DD+G +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK-THG 318
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 708
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 709 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXX 768
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 769 XXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRR 828
++ MDDF++A + S E+V + W ++ G +R
Sbjct: 437 IDAEVMNSLAVT---------MDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487
Query: 829 K 829
+
Sbjct: 488 E 488
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 140/224 (62%), Gaps = 7/224 (3%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
VT++DIG LE+VK L+ELV P++ P+ F K +T P KG+L +GPPG GKT+LAKA+A
Sbjct: 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIA 70
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR--ENPG 648
E ANFI+I + + WFGE E V+ +F A + AP V+F DE+DS+ R
Sbjct: 71 NECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130
Query: 649 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDA 706
A ++ N+ + DG+ TK + + ++ ATNRP +D A++R RL + + + LPD
Sbjct: 131 GGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188
Query: 707 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 750
+R IL+ L K ++ DVD + +A MT+G+SG+DL +C A
Sbjct: 189 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 141/230 (61%), Gaps = 9/230 (3%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V ++DIG LE ++E+V LPL+ PELF K + +P KGILL+GPPGTGKT+LAKAVA
Sbjct: 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVA 72
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--- 647
TE A FI + S + K+ GEG VK +F LA + APS+IF+DE+D++ +R +
Sbjct: 73 TETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132
Query: 648 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 705
G+ E R + + + DG + +I + ATNRP LD A++R R R + V PD
Sbjct: 133 GDREVQRTL-MQLLAEMDGFDARGDVKI--IGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 706 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 755
R +IL++ K +L+ DV+ + IA MT+G G++LK +C A I
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAI 239
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 157/294 (53%), Gaps = 15/294 (5%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 708
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 709 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXX 768
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 769 XXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYG 822
++ MDDF++A + S E+V + W ++ G
Sbjct: 437 IDAEVMNSLAVT---------MDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 157/294 (53%), Gaps = 15/294 (5%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 708
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 709 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXX 768
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 769 XXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYG 822
++ MDDF++A + S E+V + W ++ G
Sbjct: 437 IDAEVMNSLAVT---------MDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 157/294 (53%), Gaps = 15/294 (5%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V +DDIG +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 708
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 709 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIXXXXXXXXXXXXX 768
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436
Query: 769 XXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYG 822
++ MDDF++A + S E+V + W ++ G
Sbjct: 437 IDAEVMNSLAVT---------MDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 138/227 (60%), Gaps = 6/227 (2%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V +DD+G +KE+V LPL+ P LF K KP +GILL+GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALF-KAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
E GA F I+ I SK GE E ++ F A K AP++IF+DE+D++ +RE
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HG 318
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 708
E R++ ++ + DGL+ + ++V+AATNRP +D A+ R R R + + +PDA
Sbjct: 319 EVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Query: 709 RAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 755
R +ILQ+ L+ DVD + +AN T G+ G+DL LC AA + I
Sbjct: 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAI 423
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 140/226 (61%), Gaps = 10/226 (4%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
+TFD IG L L+E++ LPL+ PE+F + + KP KG+LL+GPPGTGKT+LAKAVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG-- 648
GANFI S I K+ GE + ++ +F+ A + P +IF+DEVD++ GRR + G
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 649 -EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 705
+ E R + E + DG +I++ ATNRP LD A++R RL R++ + LP+
Sbjct: 297 ADREIQRTLM-ELLTQMDGFDNLGQTKIIM--ATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 706 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 751
R +I ++ AK + + DF+A M+DG++G+D++N C T A
Sbjct: 354 EAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRN-CATEA 398
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 152 bits (385), Expect = 6e-37, Method: Composition-based stats.
Identities = 95/228 (41%), Positives = 133/228 (58%), Gaps = 10/228 (4%)
Query: 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 588
I TF D+ + K+ + ELV L+ P F K P KG+L+ GPPGTGKT+LAKA
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKA 64
Query: 589 VATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP- 647
+A EA F IS S + G G V+ +F A K AP +IF+DE+D+ +GR+
Sbjct: 65 IAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDA-VGRQRGAG 123
Query: 648 --GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNL 703
G H+ + N+ +V DG + E I+V+AATNRP LD A++R R R+++V L
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGF--EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181
Query: 704 PDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 751
PD R +IL+V + + L+PD+D IA T G+SG+DL NL AA
Sbjct: 182 PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAA 229
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 136/228 (59%), Gaps = 11/228 (4%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
VT+ DIGALE++++ L ++ P++ P+ F L P G+LL GPPG GKT+LAKAVA
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVA 65
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
E+G NFI++ + + + GE E+ V+ VF A AP VIF DEVD++ RR + E
Sbjct: 66 NESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD-RET 124
Query: 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPN 708
A ++ N+ + DGL + +++ ++AATNRP +D A++R RL + L V LP +
Sbjct: 125 GASVRVVNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182
Query: 709 RAKILQVIL---AKEDLSPDVDFDAIAN--MTDGYSGSDLKNLCVTAA 751
R IL+ I K L DV+ +AIA D Y+G+DL L A+
Sbjct: 183 RLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREAS 230
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 134/225 (59%), Gaps = 9/225 (4%)
Query: 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 591
++ DIG LE+ +KE V LPL PEL+ + + KP KG++L+G PGTGKT+LAKAVA
Sbjct: 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVAN 238
Query: 592 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP---G 648
+ A F+ I S + K+ G+G + + +F +A + APS++F+DE+D++ +R + G
Sbjct: 239 QTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG 298
Query: 649 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDA 706
E E R M E + DG D + V+ ATN+ LD A+IR R+ R+++ PD
Sbjct: 299 EREIQRTML-ELLNQLDGF--DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDL 355
Query: 707 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 751
+ KIL + +K +LS DV+ + + D SG+D++ +C A
Sbjct: 356 STKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAG 400
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 136/232 (58%), Gaps = 10/232 (4%)
Query: 525 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 584
P + VTF D+G E + LKE+V L+ P F + P KGILL GPPGTGKT+
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTL 64
Query: 585 LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 644
LA+AVA EA F +IS S + G G V+ +F+ A AP ++F+DE+D+ +GR
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRH 123
Query: 645 ENP---GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRL 699
G H+ + N+ +V DG +K E I+V+AATNRP LD A++R R +++
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKI 181
Query: 700 MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 751
+V+ PD R KIL++ + L+ DV+ + IA T G+ G+DL+NL AA
Sbjct: 182 VVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 134/224 (59%), Gaps = 9/224 (4%)
Query: 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 591
T+ D+G L+ + L E ++LP++R + F + P KG L++GPPGTGKT+LA+A A
Sbjct: 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARACAA 237
Query: 592 EAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR---ENPG 648
+ A F+ ++ + + GEG K V+ F+LA + AP++IF+DE+D++ +R E G
Sbjct: 238 QTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG 297
Query: 649 EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDA 706
+ E R M E + DG + D R+ VLAATNR LD A++R RL R++ LP
Sbjct: 298 DREVQRTML-ELLNQLDGFSSDD--RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSE 354
Query: 707 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 750
+RA+ILQ+ K D+++ +A TD ++G+ LK + V A
Sbjct: 355 DSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEA 398
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 135/232 (58%), Gaps = 10/232 (4%)
Query: 525 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTM 584
P + VTF D+G E + LKE+V L+ P F + P KGILL GPPGTG T+
Sbjct: 7 PSGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGATL 64
Query: 585 LAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 644
LA+AVA EA F +IS S + G G V+ +F+ A AP ++F+DE+D+ +GR
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA-VGRH 123
Query: 645 ENP---GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRL 699
G H+ + N+ +V DG +K E I+V+AATNRP LD A++R R +++
Sbjct: 124 RGAGLGGGHDEREQTLNQLLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKI 181
Query: 700 MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 751
+V+ PD R KIL++ + L+ DV+ + IA T G+ G+DL+NL AA
Sbjct: 182 VVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 139/237 (58%), Gaps = 13/237 (5%)
Query: 519 LLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 578
++ + +P S T+D +G L +KE++ LP++ PELF + +P KG++L+GPP
Sbjct: 137 MMVEKVPDS----TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPP 191
Query: 579 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 638
GTGKT+LA+AVA FI +S + + K+ GEG + V+ +F +A + APS+IF+DE+D
Sbjct: 192 GTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251
Query: 639 SMLGRR---ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR-- 693
S+ R G+ E R M E + DG T ++ I ++ ATNR LD A++R
Sbjct: 252 SIGSTRVEGSGGGDSEVQRTML-ELLNQLDGFET--SKNIKIIMATNRLDILDPALLRPG 308
Query: 694 RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTA 750
R+ R++ P RA+IL++ K +L+ ++ +A +G SG+D+K +C A
Sbjct: 309 RIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEA 365
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 139/253 (54%), Gaps = 20/253 (7%)
Query: 520 LADVIPP------SDIG------VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTK 567
L D++PP S +G VT+ D+G L+ K ++E V LPL + +L+ + +
Sbjct: 146 LVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-D 204
Query: 568 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI 627
P +G+LL+GPPGTGKTML KAVA A FI ++ S K+ GEG + V+ VF LA +
Sbjct: 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264
Query: 628 APSVIFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685
APS+IF+DEVDS+ +R G ++++ E + DG + + V+ ATNR
Sbjct: 265 APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF--DQSTNVKVIMATNRAD 322
Query: 686 DLDEAVIR--RLPRRL-MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 742
LD A++R RL R++ +L D R I I +K L+P+ D D++ D SG+
Sbjct: 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAV 382
Query: 743 LKNLCVTAAHRPI 755
+ + A R +
Sbjct: 383 IAAIMQEAGLRAV 395
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 9/226 (3%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
VT+ D+G ++ + L+E+V LPL PE F + P KGILL+GPPGTGKT+ A+AVA
Sbjct: 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPP-KGILLYGPPGTGKTLCARAVA 264
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--- 647
A FI + S + K+ GEG + V+ +F +A +IF DE+D++ G R +
Sbjct: 265 NRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG 324
Query: 648 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 705
G++E R M E + DG + I V+ ATNRP LD A++R R+ R++ +LPD
Sbjct: 325 GDNEVQRTML-ELITQLDGFDPRGN--IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPD 381
Query: 706 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 751
RA I ++ + + ++ I+ + +G++L+++C A
Sbjct: 382 LEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAG 427
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 135 bits (340), Expect = 9e-32, Method: Composition-based stats.
Identities = 86/226 (38%), Positives = 130/226 (57%), Gaps = 8/226 (3%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
V F D+ E K+ + E+V L+ PE + P KG+LL GPPGTGKT+LAKAVA
Sbjct: 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAKAVA 65
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG-- 648
EA F ++ SS + G G V+ +F A K APS+IF+DE+D++ R G
Sbjct: 66 GEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125
Query: 649 -EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 705
++ + N+ + DG +++ ++VLAATNRP LD A++R R R+++V+ PD
Sbjct: 126 SGNDEREQTLNQLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184
Query: 706 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 751
R +IL+V + L+ DV+ +A +T G +G+DL N+ AA
Sbjct: 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAA 230
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/296 (31%), Positives = 147/296 (49%), Gaps = 45/296 (15%)
Query: 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKA 588
+GV+F D+ + K ++E V L+ PE F + P KG LL GPPG GKT+LAKA
Sbjct: 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKA 58
Query: 589 VATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR---- 644
VATEA F+ ++ + G G V+++F A AP ++++DE+D++ +R
Sbjct: 59 VATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118
Query: 645 ---ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRL 699
N E + + N+ +V DG+ T T+ ++VLA+TNR LD A++R RL R +
Sbjct: 119 SGFSNTEEEQTL----NQLLVEMDGMGT--TDHVIVLASTNRADILDGALMRPGRLDRHV 172
Query: 700 MVNLPDAPNRAKILQVILAKEDLSPDVDF--DAIANMTDGYSGSDLKNLCVTAAHRPIXX 757
++LP R +I + L L+ F +A +T G+SG+D+ N+C AA
Sbjct: 173 FIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAA------ 226
Query: 758 XXXXXXXXXXXXXXXXXXXXXLSGCADIRPLNMDDFKYAHERVCASVSSESVNMSE 813
G + LN F+YA ERV A + +S +S+
Sbjct: 227 -----------------LHAAREGHTSVHTLN---FEYAVERVLAGTAKKSKILSK 262
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 94
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--- 647
EA FI S S + G G V+ +F A + AP ++F+DE+D+ +GR+
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 153
Query: 648 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 705
G ++ + N+ +V DG KDT I+V+AATNRP LD A++R R R++ ++ PD
Sbjct: 154 GGNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
Query: 706 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 742
R +IL++ + L+ DVD +A T G+ G+D
Sbjct: 212 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 85
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--- 647
EA FI S S + G G V+ +F A + AP ++F+DE+D+ +GR+
Sbjct: 86 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 144
Query: 648 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 705
G ++ + N+ +V DG KDT I+V+AATNRP LD A++R R R++ ++ PD
Sbjct: 145 GGNDEREQTLNQLLVEMDGF-EKDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202
Query: 706 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 742
R +IL++ + L+ DVD +A T G+ G+D
Sbjct: 203 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 120 bits (302), Expect = 3e-27, Method: Composition-based stats.
Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 70
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--- 647
EA FI S S + G G V+ +F A + AP ++F+DE+D+ +GR+
Sbjct: 71 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 129
Query: 648 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 705
G ++ + N+ +V DG KDT I+V+AATNRP LD A++R R R++ ++ PD
Sbjct: 130 GGNDEREQTLNQLLVEMDGFE-KDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 187
Query: 706 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 742
R +IL++ + L+ DVD +A T G+ G+D
Sbjct: 188 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 120 bits (301), Expect = 3e-27, Method: Composition-based stats.
Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 10/217 (4%)
Query: 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590
VTF D+ E K+ LKE+V L+ P F + P KG+LL GPPG GKT LA+AVA
Sbjct: 37 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVA 94
Query: 591 TEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--- 647
EA FI S S + G G V+ +F A + AP ++F+DE+D+ +GR+
Sbjct: 95 GEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVG 153
Query: 648 GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPD 705
G ++ + N+ +V DG KDT I+V+AATNRP LD A++R R R++ ++ PD
Sbjct: 154 GGNDEREQTLNQLLVEMDGFE-KDTA-IVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211
Query: 706 APNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSD 742
R +IL++ + L+ DVD +A T G+ G+D
Sbjct: 212 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 558 ELFCKGQLTKPCKG--ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI--TSKWFGEG 613
E +LTK KG + L GPPG GKT LAK++A G F+ IS+ + S+ G
Sbjct: 95 EYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154
Query: 614 EKYVKAV-------FSLASKIAPSVIFVDEVDSM 640
YV A+ A K+ P V +DE+D M
Sbjct: 155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKM 187
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 564 QLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF--GEGEK 615
QL +P K IL+ GP G GKT +A+ +A A A FI + + T + E +
Sbjct: 39 QLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDS 98
Query: 616 YVKAVFSLASKIAPSV-----IFVDEVDSMLGRRENPGEHEAMRKMKNEF--MVNWDGLR 668
++ + A +V +F+DE+D + + E G + ++ + +V +
Sbjct: 99 IIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158
Query: 669 TK----DTERILVLAA----TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKIL 713
TK T+ IL +A+ RP DL + RLP R+ + A + +IL
Sbjct: 159 TKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERIL 211
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 13/122 (10%)
Query: 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 626
+P + +LLFGPPG GKT LA +A E G N S +I EK LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--------EKPGDLAAILANS 87
Query: 627 IAPS-VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDTE--RILVLAATN 682
+ ++F+DE+ L R+ + AM + ++ RT E R ++ AT
Sbjct: 88 LEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 683 RP 684
RP
Sbjct: 147 RP 148
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 21/126 (16%)
Query: 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 626
+P + +LLFGPPG GKT LA +A E G N S +I LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG------------DLAAI 83
Query: 627 IAPS-----VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDTE--RILVL 678
+A S ++F+DE+ L R+ + AM + ++ RT E R ++
Sbjct: 84 LANSLEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142
Query: 679 AATNRP 684
AT RP
Sbjct: 143 GATTRP 148
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 21/126 (16%)
Query: 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK 626
+P + +LLFGPPG GKT LA +A E G N S +I LA+
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG------------DLAAI 83
Query: 627 IAPS-----VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-GLRTKDTE--RILVL 678
+A S ++F+DE+ L R+ + AM + ++ RT E R ++
Sbjct: 84 LANSLEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142
Query: 679 AATNRP 684
AT RP
Sbjct: 143 GATTRP 148
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 36/173 (20%)
Query: 572 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSV 631
++L+GPPGTGKT LA+ +A A A+ IS + K E + + + + ++
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRR---TI 109
Query: 632 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-FDLDEA 690
+FVDEV H + ++ F+ + +D + A T P F+L+ A
Sbjct: 110 LFVDEV------------HRFNKSQQDAFLPH-----IEDGTITFIGATTENPSFELNSA 152
Query: 691 VIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 743
++ R R +L+ L+ ED+ V A+ + T GY G D+
Sbjct: 153 LLSRA-------------RVYLLKS-LSTEDIE-QVLTQAMEDKTRGYGGQDI 190
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 568 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--YVKAVFSLAS 625
P +LL GPP +GKT LA +A E+ FI I S F E K +K +F A
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC-SPDKMIGFSETAKCQAMKKIFDDAY 120
Query: 626 KIAPSVIFVDEVDSML 641
K S + VD+++ +L
Sbjct: 121 KSQLSCVVVDDIERLL 136
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 568 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--YVKAVFSLAS 625
P +LL GPP +GKT LA +A E+ FI I S F E K +K +F A
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC-SPDKMIGFSETAKCQAMKKIFDDAY 121
Query: 626 KIAPSVIFVDEVDSML 641
K S + VD+++ +L
Sbjct: 122 KSQLSCVVVDDIERLL 137
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 573 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 620
+L G PG GKT + + +A G +++ M S+ +K+ GE E+ +KAV
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 621 FSLASKIAPSVI-FVDEVDSMLG 642
+ VI F+DE+ +++G
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVG 140
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 31/176 (17%)
Query: 572 ILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFG--------EGEKYVKAVFS 622
+L +GPPGTGKT A+A E G N+ N+ + S G + + +FS
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFS 108
Query: 623 LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 682
K+ I +DE D+M +N A+R++ + TK+T R VLA N
Sbjct: 109 KGFKL----IILDEADAMTNAAQN-----ALRRVIERY--------TKNT-RFCVLA--N 148
Query: 683 RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL-AKEDLSPDVDFDAIANMTDG 737
L A++ + R LP +I V++ K LSP+ + A+ +++G
Sbjct: 149 YAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE-KALIELSNG 203
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 572 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-----EKYVKAVFSLAS 625
ILL GP G+GKT+LA+ +A F +++T + + GE +K ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 626 KIAPSVIFVDEVDSMLGRRENP 647
K ++++D++D + + +NP
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNP 135
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 34 SENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 93
E K VL A Y H K + ++ + ILL GP GS + +LA+ LA
Sbjct: 20 QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSG--KTLLAETLARLLDV 77
Query: 94 KLLIFDSHSL 103
+ D+ +L
Sbjct: 78 PFTMADATTL 87
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 572 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-----EKYVKAVFSLAS 625
ILL GP G+GKT+LA+ +A F +++T + + GE +K ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 626 KIAPSVIFVDEVDSMLGRRENP 647
K ++++D++D + + +NP
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNP 135
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 34 SENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 93
E K VL A Y H K + ++ + ILL GP GS + +LA+ LA
Sbjct: 20 QEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSG--KTLLAETLARLLDV 77
Query: 94 KLLIFDSHSL 103
+ D+ +L
Sbjct: 78 PFTMADATTL 87
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 573 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 620
+L G PG GKT + + +A G +++ M S+ +K+ GE E+ +KAV
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 621 FS-LASKIAPSVIFVDEVDSMLG 642
+ ++F+DE+ +++G
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVG 277
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 573 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSITS--KWFGEGEKYVKAV 620
+L G PG GKT + + +A G + + M ++ + K+ GE E+ +K V
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 621 FS-LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMK 657
+ LA + ++F+DE+ +M+G + G +A +K
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLK 144
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 570 KGILLFGPPGTGKTMLAKAVATEAGANF 597
+ +LL GPPGTGKT LA A+A E G+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 73/186 (39%), Gaps = 38/186 (20%)
Query: 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-WFGEGEKYVKAVFSLASKIA 628
+ +L+GPPG GKT A VA E G + + + S + SK G K S+
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 629 PS-----------VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 677
+ VI +DEVD M G G+ + ++ +F R T IL+
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGMSG-----GDRGGVGQLA-QF------CRKTSTPLILI 185
Query: 678 LAATN----RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--DLSPDVDFDAI 731
N RPFD R+ + PDA + L I +E L P+V D +
Sbjct: 186 CNERNLPKMRPFD-------RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV-IDRL 237
Query: 732 ANMTDG 737
T G
Sbjct: 238 IQTTRG 243
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 570 KGILLFGPPGTGKTMLAKAVATEAGANF 597
+ +LL GPPGTGKT LA A+A E G+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 558 ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA----------TEAGANFINISMSSIT- 606
++ C+ + P LL G G GKT +A+ +A A ++ + S+
Sbjct: 200 QVLCRRRKNNP----LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA 255
Query: 607 -SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLG 642
+K+ G+ EK KA+ + S++F+DE+ +++G
Sbjct: 256 GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG 292
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 572 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS----KWFGEGEKYVKAVFSLAS-- 625
ILL GP G+GKT++A+ +A I I++S TS + GE + + AS
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLD---IPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 626 ---KIAPSVIFVDEVDSMLGRREN---------PGEHEAMRKMKNEFMVN 663
K ++F+DE+D + EN G +A+ K+ +VN
Sbjct: 132 NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 629
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 107
Query: 630 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 664
++ V ++ R E E + + NW
Sbjct: 108 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 142
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 629
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 114
Query: 630 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 664
++ V ++ R E E + + NW
Sbjct: 115 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 149
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAP 629
K IL+ GP G GKT +A+ +A A A FI + + T G K V ++ + A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAV 108
Query: 630 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 664
++ V ++ R E E + + NW
Sbjct: 109 KMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNW 143
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 36.2 bits (82), Expect = 0.081, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 553 PLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 600
PL PE ILL G PG GKT L K +A+++G +IN+
Sbjct: 2 PLGSPEFML-------LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 36.2 bits (82), Expect = 0.083, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 572 ILLFGPPGTGKTMLAKAVATEAGANFINI 600
ILL G PG GKT L K +A+++G +IN+
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 564 QLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYV 617
QL +P K IL+ GP G GKT +A+ +A A A FI + + T G K V
Sbjct: 39 QLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEV 96
Query: 618 KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650
++ + A ++ E+ R E+ E
Sbjct: 97 DSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEE 129
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 8/119 (6%)
Query: 560 FCKGQLTKPC------KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEG 613
+ + QL +P K IL GP G GKT +A+ +A A A FI + + T G
Sbjct: 35 WRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYV 92
Query: 614 EKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 672
K V ++ + A ++ E+ R E+ E + + W + D+
Sbjct: 93 GKEVDSIIRDLTDSAXKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDS 151
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 23/186 (12%)
Query: 572 ILLFGPPGTGKTMLAKAVA---------TEAGANFINISMSSITSKWFGEGEKYVKA-VF 621
IL+ G PGT K+ + + ++ T G+ ++ + + K G GE Y++A
Sbjct: 330 ILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREK--GTGEYYLEAGAL 387
Query: 622 SLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 681
LA + +DE+D M + HEAM + + G+ K R V+AA
Sbjct: 388 VLADG---GIAVIDEIDKMRD-EDRVAIHEAME--QQTVSIAKAGIVAKLNARAAVIAAG 441
Query: 682 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGS 741
N F I P +NLP P +I +D + D + + D +SG
Sbjct: 442 NPKFG---RYISERPVSDNINLP--PTILSRFDLIFILKDQPGEQDRELANYILDVHSGK 496
Query: 742 DLKNLC 747
KN+
Sbjct: 497 STKNII 502
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 528 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 581
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 582 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSML 641
KT LA +A+E N I+++ + K +G+ + A+ + + V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAILTSLER--GDVLFIDEI---- 111
Query: 642 GRRENPGEHEAMRKMKNEFMVN 663
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 528 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 581
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 582 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSML 641
KT LA +A+E N I+++ + K +G+ + A+ L S V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAI--LTSLERGDVLFIDEI---- 111
Query: 642 GRRENPGEHEAMRKMKNEFMVN 663
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 528 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 581
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 582 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSML 641
KT LA +A+E N I+++ + K +G+ + A+ + + V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAILTSLER--GDVLFIDEI---- 111
Query: 642 GRRENPGEHEAMRKMKNEFMVN 663
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 528 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 581
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 582 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSML 641
KT LA +A+E N I+++ + K +G+ + A+ + + V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAILTSLER--GDVLFIDEI---- 111
Query: 642 GRRENPGEHEAMRKMKNEFMVN 663
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 13/83 (15%)
Query: 573 LLFGPPGTGKTMLAKAVATE----------AGANFINISMSSIT--SKWFGEGEKYVKAV 620
+L G PG GKT + + +A + G +++ +SS+ +K+ G+ E+ +K++
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 621 FSLASKIAPSVI-FVDEVDSMLG 642
V+ F+DE+ +++G
Sbjct: 107 LKEVQDAEGQVVMFIDEIHTVVG 129
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 528 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 581
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 582 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSML 641
KT LA +A+E N I+++ + K +G+ + A+ + + V+F+DE+
Sbjct: 64 KTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAILTSLER--GDVLFIDEI---- 111
Query: 642 GRRENPGEHEAMRKMKNEFMVN 663
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 574 LFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPS--- 630
++G G GK+ + V + G N I +S + S GE K ++ + A++I
Sbjct: 41 IWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNM 100
Query: 631 -VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 663
+F++++D+ GR ++ +M N ++N
Sbjct: 101 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 134
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 28/142 (19%)
Query: 528 DIGVTF------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 581
D GV F D+ ENVK L L L+ ++ +G++ +LL GPPG G
Sbjct: 13 DSGVQFLRPKSLDEFIGQENVKKKLS----LALEAAKM--RGEV---LDHVLLAGPPGLG 63
Query: 582 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSML 641
+T LA +A+E N I+++ + K +G+ + A+ + + V+F+DE+
Sbjct: 64 RTTLAHIIASELQTN-IHVTSGPVLVK---QGD--MAAILTSLER--GDVLFIDEI---- 111
Query: 642 GRRENPGEHEAMRKMKNEFMVN 663
R N E + +F ++
Sbjct: 112 -HRLNKAVEELLYSAIEDFQID 132
>pdb|3TLC|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
pdb|3TLC|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Microcin C7 Antibiotic
Length = 371
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 293 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 350
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSMLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 351 GSNQTALLD 359
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|3TLB|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
pdb|3TLB|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex Aspartyl
Sulfamoyl Adenosine
Length = 371
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 293 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 350
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSMLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 351 GSNQTALLD 359
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|3TLA|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLA|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Wild Type
Apo State
pdb|3TLE|A Chain A, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
pdb|3TLE|B Chain B, Microcin C7 Self Immunity Protein Mccf In Complex With
Glutamyl Sulfamoyl Adenylate
Length = 371
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 293 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 350
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSMLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 351 GSNQTALLD 359
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|3TLZ|A Chain A, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
pdb|3TLZ|B Chain B, Microcin C7 Self Immunity Protein Mccf Mutant W186f In
Complex With Adenosine Monophosphate
Length = 371
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 293 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 350
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSMLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 351 GSNQTALLD 359
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|3TLG|A Chain A, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 293 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 350
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSXLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 351 GSNQTALLD 359
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|3TLG|B Chain B, Microcin C7 Self Immunity Protein Mccf In The Inactive
Mutant Apo State
Length = 371
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 293 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKV--IVIGSHTHTDNRKEKSHPGGLLFTKF 350
ILF++D+ KSIA +S K L ++ DKV I++G H D K P +L
Sbjct: 266 ILFIEDSRKSIATVERLFSXLK--LNRVFDKVSAIILGKHELFDCAGSKRRPYEVLTEVL 323
Query: 351 GSNQTALLD 359
Q +LD
Sbjct: 324 DGKQIPVLD 332
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 573 LLFGPPGTGKTMLAKAVATEAGANFI-------NISMSSITSKWFGEGEKYVKAVFSLAS 625
+L G PG GKT +A+ +A + N + + + +K+ GE E +K V
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 626 KIAPSVIFVD 635
+ ++F+D
Sbjct: 265 QAGNIILFID 274
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 567 KPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSKWFGEGEKYVKAVFSL 623
+P + GP G GKT LA+A+A + I I MS K G + + V
Sbjct: 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKV--- 575
Query: 624 ASKIAPSVIFVDEVD 638
+ SV+ +D ++
Sbjct: 576 -RRKPYSVVLLDAIE 589
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 573 LLFGPPGTGKTMLAKAVATEAGANFI-------NISMSSITSKWFGEGEKYVKAVFSLAS 625
+L G PG GKT +A+ +A + N + + + +K+ GE E +K V
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 626 KIAPSVIFVD 635
+ ++F+D
Sbjct: 265 QAGNIILFID 274
>pdb|2Q62|A Chain A, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|B Chain B, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|C Chain C, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|D Chain D, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|E Chain E, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|F Chain F, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|G Chain G, Crystal Structure Of Arsh From Sinorhizobium Meliloti
pdb|2Q62|H Chain H, Crystal Structure Of Arsh From Sinorhizobium Meliloti
Length = 247
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 35 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRIL-LSGPAGSEIYQEMLA---KALAHY 90
+++ + L AA+ L+ D A +T PRIL L G + Y +LA + L +
Sbjct: 4 DDSSHDLPAANLQQLRLPDSASLRPAFSTHRPRILILYGSLRTVSYSRLLAEEARRLLEF 63
Query: 91 FGAKLLIFDSHSL 103
FGA++ +FD L
Sbjct: 64 FGAEVKVFDPSGL 76
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 16/131 (12%)
Query: 570 KGILLFGPPGTGKTMLAK------AVATEAGANFINISMSSITSKWFGEGEKYVKAVFSL 623
+GI+L GPPG+GKTM+ ++ G NF + + YV L
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGL 1327
Query: 624 A----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN--EFMVNWDGLRTK--DTERI 675
S I V+F DE++ L + + G + ++ E W K ERI
Sbjct: 1328 TLLPKSDIKNLVLFCDEIN--LPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERI 1385
Query: 676 LVLAATNRPFD 686
++ A N P D
Sbjct: 1386 HIVGACNPPTD 1396
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 576 GPPGTGKTMLAKAVATEAGANFINI-SMSSITSKW 609
GP GTGK+ +AK +A + GA++++ +M I + W
Sbjct: 11 GPSGTGKSSVAKELARQLGASYLDTGAMYRIVTLW 45
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 17/80 (21%)
Query: 572 ILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKWFGEGEKYVKAVFSLASK 626
+L GPPGTGKT A A+A + NFI ++ S G V+ ++
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFAR 94
Query: 627 IAP------SVIFVDEVDSM 640
AP +IF+DE D++
Sbjct: 95 TAPIGGAPFKIIFLDEADAL 114
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 570 KGILLFGPPGTGKTMLA-KAVATEAGANFINISMSSITS 607
+GI+L GPPG+GKTM+ A+ + + + I+ S T+
Sbjct: 1049 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT 1087
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 559 LFCKGQLT-KPCKGILLFGPPGTGKTMLAKAVATEAGANF 597
L+ + +T +P + +++ G G+GKT +A VA E G F
Sbjct: 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEF 57
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 17/80 (21%)
Query: 572 ILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKWFGEGEKYVKAVFSLASK 626
+L GPPGTGKT A A+A + NFI ++ S G V+ ++
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD------ERGIDVVRHKIKEFAR 94
Query: 627 IAP------SVIFVDEVDSM 640
AP +IF+DE D++
Sbjct: 95 TAPIGGAPFKIIFLDEADAL 114
>pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus
Thermophilus
Length = 426
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 3 LRCAVFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAA--------------SYIH 48
LR RE +L G+LDGT + ++ P+ L+E K++L A + +H
Sbjct: 282 LRGEEDREALLEGLLDGTLDAIATDHAPHTLAEKEKDLLRAPFGIPSLEVAFPLLYTELH 341
Query: 49 LKHKDHAKYTSELTTVNPRILLSGP 73
LK + EL T PR +L P
Sbjct: 342 LKRGFPLQRLVELFTDGPRRVLGLP 366
>pdb|2XZM|C Chain C, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|C Chain C, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 243
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 213 GTRGKVALLFEDNPSSKIGVRFDKPIPDGV 242
G + K+ L +E NP+ K GV+ PIPD V
Sbjct: 186 GVKVKIMLPYEPNPAKKFGVK--TPIPDNV 213
>pdb|1U0J|A Chain A, Crystal Structure Of Aav2 Rep40-adp Complex
Length = 267
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 572 ILLFGPPGTGKTMLAKAVATE----AGANFI--NISMSSITSK---WFGEGEKYVKAVFS 622
I LFGP TGKT +A+A+A N+ N + K W+ EG+ K V S
Sbjct: 107 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVES 166
Query: 623 LASKIAPSVIFVDE 636
+ + S + VD+
Sbjct: 167 AKAILGGSKVRVDQ 180
>pdb|1S9H|A Chain A, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|B Chain B, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
pdb|1S9H|C Chain C, Crystal Structure Of Adeno-Associated Virus Type 2 Rep40
Length = 268
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 572 ILLFGPPGTGKTMLAKAVATE----AGANFI--NISMSSITSK---WFGEGEKYVKAVFS 622
I LFGP TGKT +A+A+A N+ N + K W+ EG+ K V S
Sbjct: 108 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTAKVVES 167
Query: 623 LASKIAPSVIFVDE 636
+ + S + VD+
Sbjct: 168 AKAILGGSKVRVDQ 181
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 572 ILLFGPPGTGKTMLAKAVA 590
+LL G PGTGK+ML +A+A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 572 ILLF-GPPGTGKTMLAKAVATEAGANFINISMSSI 605
IL+F GPPG GK AK +A E G F++IS I
Sbjct: 2 ILVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDI 34
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 558 ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITSKWFGEGEK 615
E+ +G++ + +L+ G PGTGKT +A +A G + F I+ S I S + E
Sbjct: 61 EMIREGKI--AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA 118
Query: 616 YVKA 619
+A
Sbjct: 119 LTQA 122
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 563 GQLTKPCKGI--LLFGPPGTGKTMLAKAVATE 592
G + +P KGI L+ G PGTGKT +A+ +A E
Sbjct: 3 GSMEQP-KGINILITGTPGTGKTSMAEMIAAE 33
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 533 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 592
FD E++K L + +R E C IL GP G GKT LA ++ E
Sbjct: 28 FDGYIGQESIKKNLNVFIAAAKKRNE--C-------LDHILFSGPAGLGKTTLANIISYE 78
Query: 593 AGANF 597
AN
Sbjct: 79 XSANI 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,491,748
Number of Sequences: 62578
Number of extensions: 1005888
Number of successful extensions: 2867
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2666
Number of HSP's gapped (non-prelim): 132
length of query: 836
length of database: 14,973,337
effective HSP length: 107
effective length of query: 729
effective length of database: 8,277,491
effective search space: 6034290939
effective search space used: 6034290939
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)