Query 003253
Match_columns 836
No_of_seqs 645 out of 3997
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 19:58:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 1.5E-74 3.2E-79 638.5 43.6 564 19-827 182-794 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.7E-66 3.6E-71 584.1 36.9 491 22-808 180-682 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 2.4E-57 5.2E-62 549.3 44.9 539 22-823 173-731 (733)
4 KOG0737 AAA+-type ATPase [Post 100.0 1.5E-56 3.3E-61 476.6 29.5 380 442-827 4-386 (386)
5 KOG0736 Peroxisome assembly fa 100.0 1.3E-53 2.8E-58 482.8 38.8 451 273-810 476-942 (953)
6 COG0464 SpoVK ATPases of the A 100.0 7.7E-47 1.7E-51 439.6 38.7 411 272-805 61-488 (494)
7 KOG0738 AAA+-type ATPase [Post 100.0 1E-46 2.2E-51 400.3 24.7 283 528-823 206-490 (491)
8 COG1222 RPT1 ATP-dependent 26S 100.0 1E-45 2.2E-50 391.4 24.0 247 528-803 145-395 (406)
9 KOG0741 AAA+-type ATPase [Post 100.0 2E-45 4.4E-50 401.3 26.2 388 272-751 301-720 (744)
10 KOG0735 AAA+-type ATPase [Post 100.0 1.4E-43 3E-48 397.9 35.7 399 273-763 480-894 (952)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 2.4E-45 5.2E-50 406.9 19.8 299 528-829 184-522 (802)
12 KOG0739 AAA+-type ATPase [Post 100.0 2.1E-42 4.6E-47 355.9 18.0 298 522-825 121-439 (439)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 5.3E-37 1.1E-41 351.2 39.7 410 276-821 68-484 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 3.9E-38 8.5E-43 344.7 20.8 271 524-825 294-566 (752)
15 KOG0652 26S proteasome regulat 100.0 3.5E-36 7.6E-41 304.9 19.7 245 528-801 165-413 (424)
16 KOG0740 AAA+-type ATPase [Post 100.0 1.6E-36 3.5E-41 334.8 18.5 280 528-825 147-427 (428)
17 KOG0737 AAA+-type ATPase [Post 100.0 1.2E-36 2.6E-41 324.6 14.3 232 7-454 72-315 (386)
18 KOG0727 26S proteasome regulat 100.0 1.9E-35 4E-40 298.5 20.6 245 527-800 148-396 (408)
19 KOG0728 26S proteasome regulat 100.0 1.5E-34 3.1E-39 291.7 21.2 249 529-806 142-394 (404)
20 KOG0731 AAA+-type ATPase conta 100.0 1.2E-34 2.5E-39 336.7 23.0 256 526-811 303-564 (774)
21 COG1223 Predicted ATPase (AAA+ 100.0 1.1E-34 2.3E-39 294.6 19.5 243 530-805 117-360 (368)
22 KOG0726 26S proteasome regulat 100.0 2.6E-35 5.7E-40 302.7 15.2 244 529-801 180-427 (440)
23 PTZ00454 26S protease regulato 100.0 7.6E-34 1.7E-38 318.9 24.9 247 528-803 139-389 (398)
24 KOG0729 26S proteasome regulat 100.0 8.8E-34 1.9E-38 288.2 15.8 249 528-805 171-423 (435)
25 PRK03992 proteasome-activating 100.0 7.3E-33 1.6E-37 312.1 24.7 251 528-807 125-379 (389)
26 COG1222 RPT1 ATP-dependent 26S 100.0 7.5E-34 1.6E-38 301.4 15.3 215 20-449 144-371 (406)
27 KOG0730 AAA+-type ATPase [Post 100.0 9E-34 2E-38 320.1 16.6 264 530-830 181-446 (693)
28 TIGR01241 FtsH_fam ATP-depende 100.0 4.2E-32 9E-37 315.7 25.5 271 525-825 46-320 (495)
29 COG0465 HflB ATP-dependent Zn 100.0 1.2E-32 2.6E-37 315.6 19.3 255 528-812 144-402 (596)
30 COG0542 clpA ATP-binding subun 100.0 1.7E-31 3.7E-36 312.8 29.0 361 289-719 261-707 (786)
31 TIGR02639 ClpA ATP-dependent C 100.0 2.4E-31 5.1E-36 321.9 30.4 380 272-757 259-714 (731)
32 PTZ00361 26 proteosome regulat 100.0 5.9E-32 1.3E-36 305.5 23.2 246 529-803 178-427 (438)
33 PRK11034 clpA ATP-dependent Cl 100.0 1.4E-30 3.1E-35 311.7 30.7 392 272-757 263-718 (758)
34 KOG0732 AAA+-type ATPase conta 100.0 1.3E-31 2.8E-36 318.2 15.6 384 19-644 257-669 (1080)
35 TIGR01242 26Sp45 26S proteasom 100.0 6.9E-30 1.5E-34 286.3 23.9 244 528-800 116-363 (364)
36 TIGR01243 CDC48 AAA family ATP 100.0 2.8E-30 6.1E-35 313.4 21.1 290 529-829 173-464 (733)
37 CHL00176 ftsH cell division pr 100.0 8E-30 1.7E-34 300.5 23.3 268 527-825 176-447 (638)
38 TIGR03689 pup_AAA proteasome A 100.0 3.5E-29 7.5E-34 286.5 26.5 275 527-827 175-504 (512)
39 KOG0651 26S proteasome regulat 100.0 6.9E-30 1.5E-34 265.8 13.2 245 527-800 125-373 (388)
40 PRK10733 hflB ATP-dependent me 100.0 9.7E-29 2.1E-33 294.3 24.9 267 527-823 145-415 (644)
41 KOG0738 AAA+-type ATPase [Post 100.0 4.7E-29 1E-33 266.0 13.9 219 11-448 197-430 (491)
42 TIGR03345 VI_ClpV1 type VI sec 100.0 2.5E-27 5.4E-32 288.9 31.0 424 272-757 264-833 (852)
43 CHL00095 clpC Clp protease ATP 100.0 6.1E-27 1.3E-31 286.6 32.6 413 273-757 257-784 (821)
44 COG1223 Predicted ATPase (AAA+ 100.0 2.2E-28 4.7E-33 248.8 14.7 212 22-469 116-339 (368)
45 KOG0732 AAA+-type ATPase conta 100.0 3.8E-28 8.3E-33 288.8 19.0 270 528-811 259-536 (1080)
46 CHL00206 ycf2 Ycf2; Provisiona 100.0 1E-27 2.2E-32 295.1 20.3 208 566-806 1627-1883(2281)
47 PRK10865 protein disaggregatio 100.0 1.2E-26 2.5E-31 283.9 28.8 410 273-756 256-830 (857)
48 TIGR03346 chaperone_ClpB ATP-d 99.9 4.6E-26 1E-30 279.6 31.4 424 273-757 251-828 (852)
49 KOG0736 Peroxisome assembly fa 99.9 3.3E-27 7.2E-32 268.9 17.9 228 5-448 650-893 (953)
50 KOG0741 AAA+-type ATPase [Post 99.9 1.7E-27 3.7E-32 261.3 11.8 263 531-807 216-497 (744)
51 PLN00020 ribulose bisphosphate 99.9 1.1E-25 2.3E-30 243.3 22.9 189 566-758 145-355 (413)
52 KOG0739 AAA+-type ATPase [Post 99.9 4.6E-25 1E-29 228.1 13.1 223 7-448 114-348 (439)
53 KOG0740 AAA+-type ATPase [Post 99.9 9.5E-25 2.1E-29 241.7 14.1 220 21-457 147-378 (428)
54 COG0464 SpoVK ATPases of the A 99.9 2.3E-24 5E-29 251.2 17.1 229 7-448 218-460 (494)
55 KOG0734 AAA+-type ATPase conta 99.9 1.6E-24 3.5E-29 238.3 13.2 212 14-441 291-512 (752)
56 KOG0728 26S proteasome regulat 99.9 3.1E-24 6.7E-29 217.2 13.0 211 23-449 143-367 (404)
57 PTZ00454 26S protease regulato 99.9 1.7E-23 3.7E-28 235.4 14.3 214 19-448 137-364 (398)
58 CHL00195 ycf46 Ycf46; Provisio 99.9 4.7E-23 1E-27 236.5 16.3 221 15-466 216-445 (489)
59 KOG0726 26S proteasome regulat 99.9 4.1E-24 8.9E-29 220.5 6.3 211 23-448 181-404 (440)
60 KOG0727 26S proteasome regulat 99.9 5E-23 1.1E-27 208.7 11.2 215 19-448 147-374 (408)
61 PRK03992 proteasome-activating 99.9 1.5E-22 3.2E-27 228.5 15.2 212 21-448 125-350 (389)
62 KOG0652 26S proteasome regulat 99.9 1.3E-22 2.8E-27 206.5 13.0 213 20-448 164-390 (424)
63 KOG0731 AAA+-type ATPase conta 99.9 1.6E-22 3.5E-27 235.9 13.9 217 16-448 300-531 (774)
64 KOG0729 26S proteasome regulat 99.9 1.2E-22 2.6E-27 207.3 9.4 223 20-457 170-405 (435)
65 PTZ00361 26 proteosome regulat 99.9 7.6E-22 1.7E-26 223.5 14.4 211 22-448 178-402 (438)
66 TIGR03689 pup_AAA proteasome A 99.9 2.6E-21 5.6E-26 221.9 18.5 245 17-469 172-458 (512)
67 TIGR01241 FtsH_fam ATP-depende 99.9 2.1E-21 4.6E-26 226.1 14.4 214 16-446 44-271 (495)
68 CHL00206 ycf2 Ycf2; Provisiona 99.9 2.8E-21 6E-26 238.9 15.0 131 272-448 1717-1855(2281)
69 KOG0735 AAA+-type ATPase [Post 99.8 4.9E-21 1.1E-25 216.9 13.2 237 570-828 432-677 (952)
70 COG0465 HflB ATP-dependent Zn 99.8 1E-20 2.3E-25 217.6 13.1 215 16-448 139-368 (596)
71 CHL00181 cbbX CbbX; Provisiona 99.8 1E-19 2.3E-24 197.0 18.1 217 534-761 23-261 (287)
72 KOG0651 26S proteasome regulat 99.8 1.2E-20 2.6E-25 197.1 10.2 216 22-452 127-355 (388)
73 CHL00176 ftsH cell division pr 99.8 4.2E-20 9.1E-25 218.4 15.2 217 15-447 171-400 (638)
74 TIGR02881 spore_V_K stage V sp 99.8 3E-19 6.5E-24 191.4 17.2 218 532-760 4-244 (261)
75 TIGR01242 26Sp45 26S proteasom 99.8 1.3E-19 2.9E-24 203.3 14.1 214 20-448 115-341 (364)
76 PLN00020 ribulose bisphosphate 99.8 4E-19 8.7E-24 192.6 16.9 97 272-411 192-313 (413)
77 TIGR02880 cbbX_cfxQ probable R 99.8 4.6E-19 1E-23 191.9 17.2 215 535-760 23-259 (284)
78 KOG0742 AAA+-type ATPase [Post 99.8 1E-18 2.2E-23 187.6 16.9 208 530-748 351-586 (630)
79 KOG0744 AAA+-type ATPase [Post 99.8 4.5E-19 9.7E-24 186.1 12.7 194 524-719 132-342 (423)
80 PRK10733 hflB ATP-dependent me 99.8 7.8E-19 1.7E-23 209.7 14.2 217 15-448 140-370 (644)
81 PF00004 AAA: ATPase family as 99.8 6.5E-19 1.4E-23 167.5 10.9 130 572-703 1-132 (132)
82 PF05496 RuvB_N: Holliday junc 99.7 2.8E-17 6.1E-22 168.2 10.7 196 531-749 21-224 (233)
83 TIGR02639 ClpA ATP-dependent C 99.7 4E-16 8.7E-21 189.6 19.4 184 532-740 180-386 (731)
84 COG2256 MGS1 ATPase related to 99.7 7.5E-16 1.6E-20 167.3 19.0 180 531-751 21-217 (436)
85 KOG0743 AAA+-type ATPase [Post 99.7 6.8E-16 1.5E-20 170.3 16.9 219 531-760 198-429 (457)
86 KOG1051 Chaperone HSP104 and r 99.7 9.4E-15 2E-19 174.7 26.7 128 536-683 564-710 (898)
87 TIGR00635 ruvB Holliday juncti 99.7 2.7E-15 5.8E-20 164.3 20.4 199 532-753 2-208 (305)
88 PRK00080 ruvB Holliday junctio 99.7 6.4E-15 1.4E-19 163.2 23.5 200 531-753 22-229 (328)
89 TIGR00763 lon ATP-dependent pr 99.6 3E-15 6.5E-20 183.0 17.1 213 535-759 321-559 (775)
90 COG2255 RuvB Holliday junction 99.6 1.4E-14 3.1E-19 150.8 17.8 195 531-748 23-225 (332)
91 TIGR02902 spore_lonB ATP-depen 99.6 1E-14 2.2E-19 170.8 17.1 221 531-799 62-331 (531)
92 PRK11034 clpA ATP-dependent Cl 99.6 1.6E-14 3.4E-19 174.1 18.5 197 533-753 185-408 (758)
93 PRK14956 DNA polymerase III su 99.6 2.2E-14 4.7E-19 163.0 18.1 183 531-750 15-226 (484)
94 PRK12323 DNA polymerase III su 99.6 2.4E-14 5.2E-19 166.1 18.1 184 531-751 13-230 (700)
95 PRK07003 DNA polymerase III su 99.6 2.8E-14 6.1E-19 167.4 17.7 190 531-751 13-225 (830)
96 KOG2004 Mitochondrial ATP-depe 99.6 2.6E-14 5.7E-19 163.3 16.0 173 534-718 411-597 (906)
97 TIGR03345 VI_ClpV1 type VI sec 99.6 7.4E-14 1.6E-18 171.3 19.7 197 532-753 185-409 (852)
98 PRK14960 DNA polymerase III su 99.6 1.1E-13 2.4E-18 161.1 19.8 185 531-752 12-225 (702)
99 PRK14962 DNA polymerase III su 99.5 2.2E-13 4.8E-18 156.9 21.3 182 531-749 11-221 (472)
100 PRK14958 DNA polymerase III su 99.5 1.4E-13 3E-18 160.1 19.1 185 531-752 13-226 (509)
101 PRK14961 DNA polymerase III su 99.5 2.9E-13 6.4E-18 151.9 21.1 190 531-751 13-225 (363)
102 PRK14949 DNA polymerase III su 99.5 1.3E-13 2.9E-18 164.6 18.6 190 531-751 13-225 (944)
103 PRK07994 DNA polymerase III su 99.5 1.7E-13 3.6E-18 161.6 18.7 184 531-751 13-225 (647)
104 PRK05342 clpX ATP-dependent pr 99.5 1.7E-13 3.8E-18 155.0 18.1 222 536-757 73-381 (412)
105 KOG2028 ATPase related to the 99.5 5.3E-13 1.1E-17 142.5 19.6 211 531-804 135-372 (554)
106 PRK14964 DNA polymerase III su 99.5 5.4E-13 1.2E-17 153.2 20.9 186 531-753 10-224 (491)
107 PRK13342 recombination factor 99.5 3.7E-13 8.1E-18 153.7 19.7 180 531-751 9-201 (413)
108 PRK08691 DNA polymerase III su 99.5 6.9E-13 1.5E-17 155.9 21.0 192 531-753 13-227 (709)
109 PRK10865 protein disaggregatio 99.5 1.3E-13 2.9E-18 169.5 15.3 163 532-719 176-356 (857)
110 CHL00095 clpC Clp protease ATP 99.5 2.7E-13 5.9E-18 166.9 17.5 184 532-740 177-382 (821)
111 PLN03025 replication factor C 99.5 5.5E-13 1.2E-17 147.2 18.1 180 531-748 10-202 (319)
112 TIGR00390 hslU ATP-dependent p 99.5 3.1E-13 6.7E-18 150.3 15.9 177 536-713 14-342 (441)
113 TIGR03346 chaperone_ClpB ATP-d 99.5 3.6E-13 7.9E-18 166.2 18.0 196 532-752 171-394 (852)
114 PRK04195 replication factor C 99.5 5.1E-13 1.1E-17 155.5 18.2 182 531-743 11-200 (482)
115 PRK00149 dnaA chromosomal repl 99.5 1.4E-12 3.1E-17 150.6 21.6 170 570-753 149-329 (450)
116 PRK06645 DNA polymerase III su 99.5 8.6E-13 1.9E-17 152.6 19.6 191 531-752 18-235 (507)
117 PRK14951 DNA polymerase III su 99.5 1.4E-12 2.9E-17 153.7 20.6 191 531-752 13-231 (618)
118 TIGR00362 DnaA chromosomal rep 99.5 2.3E-12 5E-17 146.9 21.9 169 570-753 137-317 (405)
119 PRK05201 hslU ATP-dependent pr 99.5 4E-13 8.8E-18 149.5 15.2 177 536-713 17-344 (443)
120 PRK07940 DNA polymerase III su 99.5 6.3E-13 1.4E-17 149.8 17.0 192 532-748 3-216 (394)
121 COG0466 Lon ATP-dependent Lon 99.5 4.6E-13 9.9E-18 154.4 15.9 172 534-717 323-508 (782)
122 TIGR02928 orc1/cdc6 family rep 99.5 2.3E-12 5E-17 144.7 21.4 202 534-756 15-256 (365)
123 PRK14957 DNA polymerase III su 99.5 1.5E-12 3.2E-17 151.6 19.9 185 531-752 13-226 (546)
124 PRK14969 DNA polymerase III su 99.5 1.4E-12 3.1E-17 152.6 19.8 191 531-752 13-226 (527)
125 PRK05563 DNA polymerase III su 99.5 3.1E-12 6.7E-17 150.7 22.0 185 531-752 13-226 (559)
126 KOG0989 Replication factor C, 99.5 1.1E-12 2.4E-17 138.2 15.9 182 531-743 33-228 (346)
127 PRK12402 replication factor C 99.5 2.8E-12 6.2E-17 142.1 20.1 186 531-748 12-228 (337)
128 PRK14963 DNA polymerase III su 99.5 2.3E-12 4.9E-17 149.7 20.0 184 531-751 11-222 (504)
129 PRK00411 cdc6 cell division co 99.4 4.4E-12 9.5E-17 144.0 20.8 226 532-804 28-286 (394)
130 TIGR00382 clpX endopeptidase C 99.4 1.7E-12 3.7E-17 146.3 17.0 222 536-757 79-387 (413)
131 PRK05896 DNA polymerase III su 99.4 2.5E-12 5.4E-17 149.9 18.7 189 531-750 13-224 (605)
132 PRK08903 DnaA regulatory inact 99.4 7.4E-12 1.6E-16 131.4 20.7 200 530-798 14-224 (227)
133 TIGR02397 dnaX_nterm DNA polym 99.4 6.3E-12 1.4E-16 140.5 20.8 185 531-752 11-224 (355)
134 PRK13341 recombination factor 99.4 3.8E-12 8.2E-17 153.0 20.0 181 531-752 25-223 (725)
135 PRK14959 DNA polymerase III su 99.4 4.8E-12 1.1E-16 148.2 20.0 181 531-748 13-222 (624)
136 PRK08084 DNA replication initi 99.4 1.6E-11 3.5E-16 129.7 21.9 183 530-749 18-212 (235)
137 PRK14965 DNA polymerase III su 99.4 4.3E-12 9.3E-17 150.2 19.3 184 531-751 13-225 (576)
138 PRK10787 DNA-binding ATP-depen 99.4 3.7E-12 8.1E-17 154.8 19.1 165 535-718 323-507 (784)
139 TIGR03420 DnaA_homol_Hda DnaA 99.4 9.6E-12 2.1E-16 130.0 19.7 185 531-752 12-207 (226)
140 PRK06893 DNA replication initi 99.4 1.2E-11 2.6E-16 130.1 20.4 158 570-749 40-206 (229)
141 PRK14952 DNA polymerase III su 99.4 4.2E-12 9.1E-17 149.1 17.7 182 531-749 10-222 (584)
142 PRK07764 DNA polymerase III su 99.4 3.7E-12 8E-17 154.8 17.4 182 531-749 12-224 (824)
143 PRK12422 chromosomal replicati 99.4 1.1E-11 2.4E-16 142.1 20.3 215 569-822 141-366 (445)
144 KOG0744 AAA+-type ATPase [Post 99.4 9.7E-13 2.1E-17 138.9 10.5 207 16-422 131-353 (423)
145 PHA02544 44 clamp loader, smal 99.4 6.3E-12 1.4E-16 138.4 17.6 155 531-717 18-173 (316)
146 PRK06647 DNA polymerase III su 99.4 1.2E-11 2.6E-16 145.4 20.0 189 531-751 13-225 (563)
147 PRK08727 hypothetical protein; 99.4 3.6E-11 7.9E-16 126.9 21.6 157 570-749 42-207 (233)
148 PRK14953 DNA polymerase III su 99.4 1.3E-11 2.8E-16 142.9 19.8 191 531-752 13-226 (486)
149 PRK07133 DNA polymerase III su 99.4 7.2E-12 1.6E-16 148.7 17.9 189 531-750 15-223 (725)
150 PRK09111 DNA polymerase III su 99.4 1.9E-11 4E-16 144.4 21.2 191 531-752 21-239 (598)
151 PRK14088 dnaA chromosomal repl 99.4 1.3E-11 2.7E-16 141.9 19.2 168 570-751 131-310 (440)
152 PF05673 DUF815: Protein of un 99.4 1.3E-11 2.8E-16 128.4 16.7 189 530-748 23-243 (249)
153 PTZ00112 origin recognition co 99.4 1.5E-11 3.4E-16 144.9 19.2 181 534-736 755-969 (1164)
154 PRK14955 DNA polymerase III su 99.4 2.2E-11 4.7E-16 138.4 19.5 190 531-751 13-233 (397)
155 PRK06305 DNA polymerase III su 99.4 1.6E-11 3.4E-16 141.3 18.3 189 531-750 14-226 (451)
156 PRK14970 DNA polymerase III su 99.4 3.2E-11 6.9E-16 135.8 20.4 190 531-751 14-214 (367)
157 PRK08451 DNA polymerase III su 99.4 1.5E-11 3.2E-16 142.7 17.9 186 531-753 11-225 (535)
158 COG3829 RocR Transcriptional r 99.4 1.8E-12 3.9E-17 146.3 9.7 203 529-752 240-477 (560)
159 PRK14086 dnaA chromosomal repl 99.4 3.1E-11 6.6E-16 140.9 20.1 167 570-751 315-493 (617)
160 TIGR02903 spore_lon_C ATP-depe 99.3 2.2E-11 4.8E-16 145.0 18.8 230 531-800 151-430 (615)
161 CHL00081 chlI Mg-protoporyphyr 99.3 1.9E-11 4.2E-16 135.0 16.5 168 530-717 13-232 (350)
162 PRK13407 bchI magnesium chelat 99.3 1.2E-11 2.5E-16 136.4 14.4 169 531-718 5-217 (334)
163 TIGR02640 gas_vesic_GvpN gas v 99.3 1.7E-11 3.6E-16 131.7 15.2 141 570-717 22-198 (262)
164 PRK00440 rfc replication facto 99.3 4.1E-11 8.9E-16 131.7 18.6 183 531-751 14-208 (319)
165 COG2812 DnaX DNA polymerase II 99.3 9E-12 2E-16 142.8 13.2 192 531-753 13-227 (515)
166 PRK06620 hypothetical protein; 99.3 7.6E-11 1.7E-15 122.7 18.9 143 570-749 45-192 (214)
167 PRK05642 DNA replication initi 99.3 1.9E-10 4.2E-15 121.4 20.9 158 570-750 46-212 (234)
168 PRK14950 DNA polymerase III su 99.3 1E-10 2.2E-15 139.1 19.9 189 531-750 13-225 (585)
169 PRK14954 DNA polymerase III su 99.3 6.9E-11 1.5E-15 139.8 18.3 187 531-748 13-230 (620)
170 PRK14948 DNA polymerase III su 99.3 4.1E-11 8.8E-16 142.4 16.2 187 531-748 13-224 (620)
171 PRK14087 dnaA chromosomal repl 99.3 1.7E-10 3.7E-15 132.8 20.2 170 570-754 142-327 (450)
172 PF00308 Bac_DnaA: Bacterial d 99.3 1.2E-10 2.6E-15 121.8 16.7 168 570-752 35-214 (219)
173 PF00004 AAA: ATPase family as 99.3 2.1E-11 4.5E-16 115.7 10.0 60 272-334 42-113 (132)
174 PRK14971 DNA polymerase III su 99.3 1.8E-10 3.8E-15 137.0 19.7 182 531-749 14-225 (614)
175 COG3604 FhlA Transcriptional r 99.3 2.1E-11 4.5E-16 136.0 11.0 205 529-754 218-456 (550)
176 KOG0742 AAA+-type ATPase [Post 99.2 5.5E-11 1.2E-15 128.8 12.3 143 273-460 428-587 (630)
177 COG2204 AtoC Response regulato 99.2 2.9E-11 6.3E-16 136.9 10.3 203 531-754 138-374 (464)
178 cd00009 AAA The AAA+ (ATPases 99.2 8.5E-11 1.8E-15 112.2 11.8 124 569-702 19-150 (151)
179 TIGR02030 BchI-ChlI magnesium 99.2 2.1E-10 4.5E-15 126.9 15.5 163 533-717 3-219 (337)
180 KOG0991 Replication factor C, 99.2 2.9E-10 6.3E-15 115.5 14.2 182 531-746 24-215 (333)
181 TIGR01650 PD_CobS cobaltochela 99.2 6.4E-11 1.4E-15 129.0 10.2 142 570-717 65-233 (327)
182 TIGR02442 Cob-chelat-sub cobal 99.2 1.4E-10 3E-15 139.0 13.9 164 533-718 3-215 (633)
183 PHA02244 ATPase-like protein 99.2 2.5E-10 5.4E-15 125.7 14.0 130 570-706 120-263 (383)
184 COG0593 DnaA ATPase involved i 99.2 1.5E-09 3.3E-14 121.4 20.3 171 568-753 112-293 (408)
185 COG1219 ClpX ATP-dependent pro 99.1 1.9E-10 4.1E-15 121.7 11.1 131 536-666 63-202 (408)
186 PRK09112 DNA polymerase III su 99.1 9.9E-10 2.2E-14 122.4 17.3 189 531-751 20-245 (351)
187 TIGR02974 phageshock_pspF psp 99.1 2.3E-10 5.1E-15 126.7 12.2 176 570-754 23-233 (329)
188 COG1221 PspF Transcriptional r 99.1 1.1E-10 2.4E-15 130.0 9.3 205 530-755 74-310 (403)
189 PRK05564 DNA polymerase III su 99.1 1.1E-09 2.4E-14 120.7 16.8 177 531-740 1-185 (313)
190 COG1474 CDC6 Cdc6-related prot 99.1 1.8E-09 4E-14 120.8 18.5 199 535-756 18-247 (366)
191 PRK15424 propionate catabolism 99.1 2.8E-10 6.1E-15 132.8 12.2 202 531-753 216-464 (538)
192 PRK09087 hypothetical protein; 99.1 1.7E-09 3.6E-14 113.7 16.5 172 570-800 45-222 (226)
193 PRK11608 pspF phage shock prot 99.1 3.4E-10 7.4E-15 125.3 11.5 200 533-753 5-239 (326)
194 COG1224 TIP49 DNA helicase TIP 99.1 3.9E-09 8.5E-14 113.4 18.8 130 628-801 291-433 (450)
195 TIGR02329 propionate_PrpR prop 99.1 3.2E-10 7E-15 132.4 11.5 202 531-753 209-449 (526)
196 PRK07471 DNA polymerase III su 99.1 1.5E-09 3.2E-14 121.6 16.1 183 531-747 16-239 (365)
197 PRK05022 anaerobic nitric oxid 99.1 7.2E-10 1.6E-14 130.0 12.3 203 532-755 185-421 (509)
198 COG2607 Predicted ATPase (AAA+ 99.1 9.2E-09 2E-13 105.5 18.3 188 531-748 57-275 (287)
199 KOG1969 DNA replication checkp 99.0 2E-09 4.4E-14 124.4 14.9 161 569-750 326-511 (877)
200 KOG0745 Putative ATP-dependent 99.0 2.3E-09 5E-14 117.5 14.5 73 570-642 227-305 (564)
201 TIGR01817 nifA Nif-specific re 99.0 4.9E-10 1.1E-14 132.4 10.2 204 530-754 192-428 (534)
202 TIGR02881 spore_V_K stage V sp 99.0 4E-09 8.6E-14 113.3 16.2 84 290-411 105-193 (261)
203 PRK07399 DNA polymerase III su 99.0 2.1E-09 4.6E-14 118.1 14.2 179 532-743 2-219 (314)
204 COG0542 clpA ATP-binding subun 99.0 1.9E-09 4.1E-14 128.2 13.8 196 533-753 169-392 (786)
205 PRK10820 DNA-binding transcrip 99.0 1E-09 2.2E-14 128.9 11.2 203 530-753 200-436 (520)
206 PF07724 AAA_2: AAA domain (Cd 99.0 8.5E-10 1.8E-14 110.8 8.8 115 567-684 1-130 (171)
207 TIGR00678 holB DNA polymerase 99.0 8.3E-09 1.8E-13 105.1 16.2 145 567-738 12-184 (188)
208 TIGR03015 pepcterm_ATPase puta 99.0 4.2E-08 9E-13 105.4 22.4 192 570-801 44-267 (269)
209 PRK15429 formate hydrogenlyase 99.0 2.4E-09 5.2E-14 130.1 14.1 203 531-754 373-609 (686)
210 COG1239 ChlI Mg-chelatase subu 99.0 4.8E-09 1E-13 116.1 14.7 169 531-719 14-234 (423)
211 CHL00181 cbbX CbbX; Provisiona 99.0 2.9E-09 6.3E-14 115.7 12.8 84 290-411 122-211 (287)
212 COG0714 MoxR-like ATPases [Gen 99.0 9.9E-10 2.2E-14 121.9 9.2 138 570-716 44-202 (329)
213 TIGR00764 lon_rel lon-related 99.0 6.2E-09 1.4E-13 123.9 16.2 50 531-596 15-64 (608)
214 smart00382 AAA ATPases associa 99.0 2.1E-09 4.5E-14 101.4 9.9 127 570-704 3-147 (148)
215 PF01078 Mg_chelatase: Magnesi 99.0 1.5E-10 3.3E-15 118.1 2.0 46 532-593 1-46 (206)
216 COG1220 HslU ATP-dependent pro 99.0 2.4E-09 5.1E-14 114.2 10.9 86 628-714 250-346 (444)
217 TIGR02031 BchD-ChlD magnesium 99.0 2.9E-09 6.2E-14 126.5 13.0 217 569-801 16-259 (589)
218 PRK11388 DNA-binding transcrip 99.0 1.3E-09 2.8E-14 131.5 9.9 202 531-753 322-553 (638)
219 PF07728 AAA_5: AAA domain (dy 99.0 8.1E-11 1.8E-15 113.7 -0.5 112 571-695 1-139 (139)
220 smart00350 MCM minichromosome 99.0 7E-09 1.5E-13 121.6 15.5 175 535-719 204-402 (509)
221 PRK05707 DNA polymerase III su 99.0 9.1E-09 2E-13 113.8 15.3 154 567-740 20-198 (328)
222 COG0470 HolB ATPase involved i 98.9 4.7E-09 1E-13 115.6 12.6 148 535-713 2-177 (325)
223 PRK08058 DNA polymerase III su 98.9 1.6E-08 3.4E-13 112.3 16.3 154 532-715 3-180 (329)
224 PF00158 Sigma54_activat: Sigm 98.9 6.5E-10 1.4E-14 111.3 4.7 118 570-695 23-162 (168)
225 PF07726 AAA_3: ATPase family 98.9 2.7E-10 6E-15 107.3 1.7 113 571-695 1-129 (131)
226 PRK04132 replication factor C 98.9 8.7E-09 1.9E-13 125.0 14.4 161 567-751 562-736 (846)
227 PRK11331 5-methylcytosine-spec 98.9 1.2E-08 2.6E-13 115.3 13.5 122 570-703 195-357 (459)
228 PF06068 TIP49: TIP49 C-termin 98.9 1.6E-08 3.4E-13 110.7 13.6 102 628-747 278-392 (398)
229 TIGR02880 cbbX_cfxQ probable R 98.9 2.1E-08 4.5E-13 109.0 14.6 84 290-411 121-210 (284)
230 PRK13531 regulatory ATPase Rav 98.9 4.5E-08 9.8E-13 111.6 17.2 159 536-716 22-193 (498)
231 KOG2035 Replication factor C, 98.9 7.5E-08 1.6E-12 100.6 16.8 180 532-742 11-225 (351)
232 PF05621 TniB: Bacterial TniB 98.9 1.3E-07 2.8E-12 101.7 18.8 177 570-757 62-272 (302)
233 TIGR02915 PEP_resp_reg putativ 98.8 1.2E-08 2.5E-13 117.9 9.7 176 570-754 163-372 (445)
234 TIGR00368 Mg chelatase-related 98.8 2E-08 4.4E-13 116.6 11.4 153 531-707 189-394 (499)
235 PRK06871 DNA polymerase III su 98.8 1.4E-07 3.1E-12 103.8 16.8 169 538-740 6-198 (325)
236 TIGR00763 lon ATP-dependent pr 98.8 2.2E-07 4.7E-12 114.4 19.3 55 35-100 326-380 (775)
237 PF13177 DNA_pol3_delta2: DNA 98.8 4E-08 8.7E-13 97.9 10.3 136 538-703 1-160 (162)
238 TIGR00602 rad24 checkpoint pro 98.7 1.8E-07 3.8E-12 111.1 16.9 190 531-743 81-321 (637)
239 KOG1514 Origin recognition com 98.7 4.3E-07 9.4E-12 105.4 18.5 231 536-807 398-662 (767)
240 KOG2227 Pre-initiation complex 98.7 5.7E-07 1.2E-11 100.3 18.6 237 535-805 151-420 (529)
241 TIGR00390 hslU ATP-dependent p 98.7 1.9E-07 4.1E-12 104.7 14.9 82 19-104 3-84 (441)
242 PRK10923 glnG nitrogen regulat 98.7 8.1E-08 1.8E-12 111.7 12.0 201 533-754 137-371 (469)
243 PRK07993 DNA polymerase III su 98.7 2.3E-07 5.1E-12 102.9 14.9 154 567-741 22-200 (334)
244 PRK08769 DNA polymerase III su 98.7 3.6E-07 7.7E-12 100.5 15.1 170 539-743 9-206 (319)
245 PTZ00111 DNA replication licen 98.6 5.1E-08 1.1E-12 117.9 8.5 187 514-718 439-658 (915)
246 COG3283 TyrR Transcriptional r 98.6 2E-07 4.3E-12 100.3 11.3 203 530-753 200-431 (511)
247 PRK12377 putative replication 98.6 2.5E-07 5.5E-12 98.3 11.9 111 516-640 56-175 (248)
248 smart00763 AAA_PrkA PrkA AAA d 98.6 3.2E-07 6.8E-12 101.5 12.8 62 533-602 49-118 (361)
249 PRK05201 hslU ATP-dependent pr 98.6 7.1E-07 1.5E-11 100.2 15.2 68 35-105 21-88 (443)
250 PRK06090 DNA polymerase III su 98.6 9.3E-07 2E-11 97.2 15.7 148 538-715 7-178 (319)
251 PRK11361 acetoacetate metaboli 98.6 4.1E-07 8.9E-12 105.4 13.5 176 570-754 167-376 (457)
252 PRK06964 DNA polymerase III su 98.6 5.8E-07 1.3E-11 99.7 14.0 133 567-716 19-203 (342)
253 PRK09862 putative ATP-dependen 98.6 4.5E-07 9.8E-12 105.1 13.2 152 532-707 189-391 (506)
254 PRK08116 hypothetical protein; 98.6 3.8E-07 8.3E-12 98.3 11.8 68 570-639 115-189 (268)
255 KOG0990 Replication factor C, 98.6 2.9E-07 6.2E-12 98.3 10.5 158 530-721 37-207 (360)
256 PRK07952 DNA replication prote 98.5 6.6E-07 1.4E-11 94.9 12.5 108 519-640 57-174 (244)
257 PRK15115 response regulator Gl 98.5 9E-07 2E-11 102.3 13.6 175 570-753 158-366 (444)
258 PRK13765 ATP-dependent proteas 98.5 7.4E-07 1.6E-11 106.2 13.0 48 531-594 28-75 (637)
259 KOG1942 DNA helicase, TBP-inte 98.5 2E-06 4.3E-11 90.5 14.5 94 628-739 296-403 (456)
260 PRK00080 ruvB Holliday junctio 98.5 2.6E-06 5.7E-11 94.6 16.3 60 25-98 23-82 (328)
261 TIGR01818 ntrC nitrogen regula 98.5 3.7E-07 8E-12 106.0 9.8 179 570-754 158-367 (463)
262 COG0606 Predicted ATPase with 98.5 1.1E-07 2.4E-12 106.8 4.8 48 530-593 175-222 (490)
263 KOG2680 DNA helicase TIP49, TB 98.5 3.3E-06 7.2E-11 89.2 14.8 133 628-804 288-433 (454)
264 PRK13406 bchD magnesium chelat 98.4 1.8E-06 3.8E-11 102.3 13.9 132 569-708 25-173 (584)
265 PRK05342 clpX ATP-dependent pr 98.4 1.8E-06 3.9E-11 98.3 12.8 85 16-104 59-145 (412)
266 PF14532 Sigma54_activ_2: Sigm 98.4 3E-07 6.4E-12 89.1 5.5 106 570-705 22-137 (138)
267 PRK08181 transposase; Validate 98.4 8E-07 1.7E-11 95.6 9.3 69 570-640 107-179 (269)
268 PRK08699 DNA polymerase III su 98.4 1.3E-06 2.9E-11 96.6 10.6 131 567-715 19-183 (325)
269 PF01637 Arch_ATPase: Archaeal 98.4 1.2E-06 2.6E-11 91.1 9.8 162 569-740 20-229 (234)
270 PF03215 Rad17: Rad17 cell cyc 98.4 5.9E-06 1.3E-10 96.6 15.9 194 531-750 16-264 (519)
271 TIGR00635 ruvB Holliday juncti 98.4 6.4E-06 1.4E-10 90.4 15.3 61 25-99 2-62 (305)
272 TIGR00382 clpX endopeptidase C 98.4 1E-05 2.2E-10 91.8 17.3 85 16-103 65-152 (413)
273 PRK10365 transcriptional regul 98.4 1.3E-06 2.9E-11 100.6 10.3 175 570-753 163-371 (441)
274 PRK14962 DNA polymerase III su 98.3 1.4E-05 3E-10 92.7 17.4 74 290-410 117-190 (472)
275 COG2256 MGS1 ATPase related to 98.3 5.3E-06 1.1E-10 91.4 12.5 89 274-409 87-176 (436)
276 KOG0482 DNA replication licens 98.3 9.2E-06 2E-10 91.0 14.5 226 511-757 328-592 (721)
277 PRK08939 primosomal protein Dn 98.3 5E-06 1.1E-10 91.3 11.6 70 569-640 156-229 (306)
278 COG1241 MCM2 Predicted ATPase 98.3 1.3E-06 2.8E-11 103.5 7.4 174 535-720 287-486 (682)
279 PF13173 AAA_14: AAA domain 98.2 2.6E-06 5.6E-11 81.4 7.7 69 570-640 3-73 (128)
280 COG3284 AcoR Transcriptional a 98.2 1.8E-06 3.8E-11 100.1 7.6 177 570-753 337-539 (606)
281 KOG0743 AAA+-type ATPase [Post 98.2 2E-05 4.3E-10 88.3 15.2 73 23-99 186-267 (457)
282 PRK06835 DNA replication prote 98.2 3.1E-06 6.8E-11 93.6 8.8 69 570-640 184-258 (329)
283 TIGR02928 orc1/cdc6 family rep 98.2 5.7E-05 1.2E-09 84.9 18.9 96 273-410 114-213 (365)
284 PF13401 AAA_22: AAA domain; P 98.2 5.8E-06 1.3E-10 78.5 9.2 98 570-682 5-126 (131)
285 PRK06526 transposase; Provisio 98.2 2.3E-06 4.9E-11 91.6 6.8 69 570-640 99-171 (254)
286 PF01695 IstB_IS21: IstB-like 98.2 1.9E-06 4E-11 87.3 5.2 70 569-640 47-120 (178)
287 PHA02544 44 clamp loader, smal 98.2 3.8E-05 8.1E-10 84.7 15.6 74 290-409 100-173 (316)
288 KOG0480 DNA replication licens 98.1 2.1E-05 4.5E-10 90.6 12.8 217 511-751 331-571 (764)
289 PRK13342 recombination factor 98.1 4.9E-05 1.1E-09 87.2 16.2 76 289-411 91-166 (413)
290 COG1484 DnaC DNA replication p 98.1 7.5E-06 1.6E-10 87.6 8.1 70 569-640 105-179 (254)
291 COG1219 ClpX ATP-dependent pro 98.1 2E-06 4.3E-11 91.7 3.5 87 15-105 48-135 (408)
292 PRK05917 DNA polymerase III su 98.1 4.3E-05 9.2E-10 82.8 13.5 121 567-704 17-154 (290)
293 PF05673 DUF815: Protein of un 98.1 0.00012 2.7E-09 76.8 16.1 110 276-409 94-207 (249)
294 TIGR02640 gas_vesic_GvpN gas v 98.0 3E-05 6.5E-10 83.5 11.8 36 64-101 20-55 (262)
295 PRK09183 transposase/IS protei 98.0 9.5E-06 2.1E-10 87.1 7.8 70 570-640 103-176 (259)
296 PF05496 RuvB_N: Holliday junc 98.0 2.7E-05 5.9E-10 80.6 10.7 61 25-99 22-82 (233)
297 PRK06645 DNA polymerase III su 98.0 0.00015 3.2E-09 84.8 18.0 74 291-411 129-202 (507)
298 PRK14964 DNA polymerase III su 98.0 8.4E-05 1.8E-09 86.2 15.9 75 290-411 116-190 (491)
299 PF05729 NACHT: NACHT domain 98.0 2.7E-05 5.9E-10 76.5 10.4 140 571-719 2-165 (166)
300 PRK06921 hypothetical protein; 98.0 1.1E-05 2.4E-10 86.9 7.9 67 570-639 118-188 (266)
301 PRK00149 dnaA chromosomal repl 98.0 4.6E-05 9.9E-10 88.5 13.3 79 291-411 212-295 (450)
302 PRK07276 DNA polymerase III su 98.0 0.00013 2.8E-09 79.3 15.7 169 539-747 7-198 (290)
303 PRK04195 replication factor C 98.0 0.00014 3E-09 85.2 17.1 63 25-102 12-74 (482)
304 PRK14961 DNA polymerase III su 98.0 0.00021 4.6E-09 80.6 18.0 75 290-411 119-193 (363)
305 PF12774 AAA_6: Hydrolytic ATP 98.0 4.2E-05 9.1E-10 80.6 11.0 131 570-713 33-176 (231)
306 cd01120 RecA-like_NTPases RecA 98.0 3.4E-05 7.4E-10 75.3 9.4 71 572-642 2-99 (165)
307 PF12775 AAA_7: P-loop contain 98.0 1.1E-05 2.3E-10 87.3 6.1 139 570-719 34-195 (272)
308 KOG0478 DNA replication licens 98.0 5.3E-05 1.2E-09 88.0 12.0 175 535-717 430-626 (804)
309 KOG1970 Checkpoint RAD17-RFC c 97.9 0.00033 7.1E-09 80.1 17.9 197 531-750 79-316 (634)
310 KOG2170 ATPase of the AAA+ sup 97.9 0.00023 5E-09 76.0 15.0 130 536-684 84-225 (344)
311 PRK00411 cdc6 cell division co 97.9 0.00037 8.1E-09 79.2 18.0 96 273-410 123-221 (394)
312 TIGR02397 dnaX_nterm DNA polym 97.9 0.00046 1E-08 77.2 18.4 74 291-411 118-191 (355)
313 TIGR00362 DnaA chromosomal rep 97.9 9E-05 2E-09 84.8 12.9 78 292-411 201-283 (405)
314 PRK07764 DNA polymerase III su 97.9 0.00032 7E-09 86.4 17.6 75 290-411 120-194 (824)
315 PRK14956 DNA polymerase III su 97.9 0.00035 7.7E-09 80.5 16.5 75 289-410 120-194 (484)
316 PRK10787 DNA-binding ATP-depen 97.9 0.00026 5.5E-09 87.1 16.3 34 64-99 348-381 (784)
317 PRK07132 DNA polymerase III su 97.8 0.00038 8.3E-09 76.1 15.7 126 568-715 17-160 (299)
318 PRK12323 DNA polymerase III su 97.8 0.00016 3.4E-09 85.5 13.3 75 289-410 123-197 (700)
319 PRK05818 DNA polymerase III su 97.8 0.00021 4.6E-09 75.9 13.1 121 567-704 5-147 (261)
320 KOG2228 Origin recognition com 97.8 7.2E-05 1.6E-09 80.8 9.5 160 536-717 26-219 (408)
321 PRK12402 replication factor C 97.8 0.00045 9.7E-09 76.7 16.1 60 25-103 13-77 (337)
322 PRK05563 DNA polymerase III su 97.8 0.00052 1.1E-08 81.6 17.4 75 289-410 118-192 (559)
323 PF00493 MCM: MCM2/3/5 family 97.8 1.9E-06 4.2E-11 95.7 -3.0 175 535-720 25-224 (331)
324 PRK14959 DNA polymerase III su 97.8 0.00068 1.5E-08 80.5 17.8 75 289-410 118-192 (624)
325 PF00931 NB-ARC: NB-ARC domain 97.8 0.00026 5.6E-09 76.7 13.3 158 567-746 17-202 (287)
326 TIGR02902 spore_lonB ATP-depen 97.8 0.00033 7.2E-09 82.8 15.1 59 24-101 62-130 (531)
327 PRK14960 DNA polymerase III su 97.8 0.00035 7.5E-09 82.9 15.0 75 290-411 118-192 (702)
328 PRK07003 DNA polymerase III su 97.7 0.00029 6.3E-09 84.4 13.9 75 290-411 119-193 (830)
329 KOG0477 DNA replication licens 97.7 7.2E-05 1.6E-09 85.9 8.4 166 514-701 438-629 (854)
330 PRK14963 DNA polymerase III su 97.7 0.00095 2.1E-08 78.3 17.5 76 289-411 115-190 (504)
331 PRK07940 DNA polymerase III su 97.7 0.00051 1.1E-08 78.1 14.8 61 25-94 3-63 (394)
332 COG1618 Predicted nucleotide k 97.7 0.00038 8.2E-09 68.2 11.5 25 569-593 5-29 (179)
333 PF00910 RNA_helicase: RNA hel 97.7 7.9E-05 1.7E-09 69.0 6.7 23 572-594 1-23 (107)
334 PRK14088 dnaA chromosomal repl 97.7 0.0015 3.3E-08 75.5 18.5 79 290-410 194-277 (440)
335 PRK06305 DNA polymerase III su 97.7 0.0011 2.4E-08 76.9 17.3 75 289-410 120-194 (451)
336 PRK14957 DNA polymerase III su 97.7 0.0015 3.2E-08 77.0 18.5 75 289-410 118-192 (546)
337 PRK07133 DNA polymerase III su 97.7 0.00086 1.9E-08 80.8 16.5 74 290-410 118-191 (725)
338 PRK14949 DNA polymerase III su 97.7 0.0012 2.7E-08 80.5 17.9 74 290-410 119-192 (944)
339 PRK14952 DNA polymerase III su 97.7 0.0017 3.7E-08 77.2 18.6 73 292-411 120-192 (584)
340 COG4650 RtcR Sigma54-dependent 97.7 9.1E-05 2E-09 78.2 6.9 136 570-711 209-366 (531)
341 PLN03025 replication factor C 97.6 0.00056 1.2E-08 75.8 13.3 75 290-411 99-173 (319)
342 PRK11331 5-methylcytosine-spec 97.6 0.00043 9.4E-09 78.9 11.9 27 64-92 193-219 (459)
343 KOG1968 Replication factor C, 97.6 8.1E-05 1.7E-09 91.2 6.4 162 571-751 359-533 (871)
344 PRK14965 DNA polymerase III su 97.6 0.00077 1.7E-08 80.5 14.5 72 292-410 121-192 (576)
345 PRK08691 DNA polymerase III su 97.6 0.0012 2.5E-08 79.1 15.7 52 25-94 14-65 (709)
346 TIGR02237 recomb_radB DNA repa 97.6 0.00029 6.2E-09 72.9 9.5 76 567-642 10-111 (209)
347 TIGR01618 phage_P_loop phage n 97.6 8.1E-05 1.8E-09 77.7 5.3 75 566-642 9-95 (220)
348 PRK14086 dnaA chromosomal repl 97.6 0.0015 3.2E-08 77.4 16.1 79 291-411 378-461 (617)
349 PRK06893 DNA replication initi 97.6 0.00021 4.5E-09 75.4 8.2 79 291-410 92-175 (229)
350 PRK13341 recombination factor 97.6 0.00045 9.8E-09 84.0 12.1 74 290-410 109-182 (725)
351 PRK05896 DNA polymerase III su 97.5 0.0014 3E-08 77.6 15.6 72 292-410 121-192 (605)
352 TIGR03420 DnaA_homol_Hda DnaA 97.5 0.00095 2.1E-08 69.7 12.9 62 22-100 10-74 (226)
353 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00025 5.3E-09 79.7 8.9 102 566-684 59-168 (362)
354 PRK14953 DNA polymerase III su 97.5 0.0023 5E-08 74.8 17.2 74 290-410 119-192 (486)
355 PHA00729 NTP-binding motif con 97.5 0.00025 5.3E-09 74.1 8.0 28 570-597 18-45 (226)
356 PRK14958 DNA polymerase III su 97.5 0.00092 2E-08 78.5 13.6 52 25-94 14-65 (509)
357 COG3267 ExeA Type II secretory 97.5 0.0028 6E-08 66.7 15.4 175 570-756 52-255 (269)
358 PRK09111 DNA polymerase III su 97.5 0.0036 7.7E-08 74.9 18.2 74 291-411 133-206 (598)
359 cd01124 KaiC KaiC is a circadi 97.5 0.00048 1E-08 69.6 9.5 71 572-642 2-109 (187)
360 PRK08084 DNA replication initi 97.5 0.00062 1.3E-08 72.1 10.3 53 23-92 18-70 (235)
361 PRK14948 DNA polymerase III su 97.5 0.0048 1.1E-07 74.2 18.9 70 291-407 122-191 (620)
362 PRK07994 DNA polymerase III su 97.4 0.0036 7.9E-08 75.0 17.5 74 290-410 119-192 (647)
363 PRK06647 DNA polymerase III su 97.4 0.0018 3.8E-08 77.0 14.4 75 289-410 118-192 (563)
364 PF13207 AAA_17: AAA domain; P 97.4 0.00011 2.4E-09 68.8 3.5 31 572-602 2-32 (121)
365 PRK14951 DNA polymerase III su 97.4 0.0039 8.5E-08 74.5 17.3 72 292-410 126-197 (618)
366 PTZ00112 origin recognition co 97.4 0.005 1.1E-07 74.6 17.8 96 273-410 853-950 (1164)
367 PLN03210 Resistant to P. syrin 97.4 0.0019 4.2E-08 83.4 15.8 172 532-739 182-389 (1153)
368 PRK14969 DNA polymerase III su 97.4 0.0017 3.7E-08 76.7 13.7 73 291-410 120-192 (527)
369 COG5271 MDN1 AAA ATPase contai 97.4 0.0005 1.1E-08 85.7 9.1 134 570-717 1544-1703(4600)
370 TIGR01650 PD_CobS cobaltochela 97.3 0.0031 6.7E-08 69.5 14.0 35 65-101 64-98 (327)
371 PRK08118 topology modulation p 97.3 0.00049 1.1E-08 69.0 7.0 33 570-602 2-34 (167)
372 PRK14955 DNA polymerase III su 97.3 0.0043 9.2E-08 71.0 15.4 52 25-94 14-65 (397)
373 PRK14970 DNA polymerase III su 97.3 0.011 2.3E-07 66.9 18.3 75 290-411 108-182 (367)
374 cd01121 Sms Sms (bacterial rad 97.3 0.0013 2.8E-08 74.2 10.7 98 567-664 80-196 (372)
375 PF00308 Bac_DnaA: Bacterial d 97.3 0.00038 8.2E-09 73.0 5.8 77 293-411 100-181 (219)
376 PRK11823 DNA repair protein Ra 97.3 0.0013 2.9E-08 76.1 10.7 98 567-664 78-194 (446)
377 PRK07261 topology modulation p 97.3 0.00065 1.4E-08 68.4 7.1 34 571-604 2-35 (171)
378 PF03266 NTPase_1: NTPase; In 97.2 0.00021 4.6E-09 71.7 3.4 23 571-593 1-23 (168)
379 KOG0479 DNA replication licens 97.2 0.00084 1.8E-08 76.9 8.4 172 535-718 302-499 (818)
380 PRK14950 DNA polymerase III su 97.2 0.011 2.4E-07 71.0 18.4 51 25-93 14-64 (585)
381 KOG0745 Putative ATP-dependent 97.2 0.00062 1.4E-08 75.7 6.9 37 67-105 228-264 (564)
382 PRK00440 rfc replication facto 97.2 0.015 3.3E-07 63.8 18.1 75 290-411 102-176 (319)
383 smart00382 AAA ATPases associa 97.2 0.0023 5E-08 59.8 10.0 36 65-102 2-40 (148)
384 PRK13407 bchI magnesium chelat 97.2 0.011 2.4E-07 65.8 16.6 49 25-92 6-54 (334)
385 PRK08451 DNA polymerase III su 97.2 0.0098 2.1E-07 70.0 16.8 73 292-411 119-191 (535)
386 PRK14954 DNA polymerase III su 97.1 0.013 2.8E-07 70.3 17.7 71 292-409 129-199 (620)
387 PRK00131 aroK shikimate kinase 97.1 0.0004 8.8E-09 69.1 4.2 33 569-601 4-36 (175)
388 PRK08533 flagellar accessory p 97.1 0.003 6.5E-08 66.7 10.9 75 567-641 22-130 (230)
389 PHA02624 large T antigen; Prov 97.1 0.0022 4.8E-08 75.2 10.6 120 570-703 432-561 (647)
390 PRK15455 PrkA family serine pr 97.1 0.00061 1.3E-08 79.4 5.9 61 532-600 74-135 (644)
391 PF14516 AAA_35: AAA-like doma 97.1 0.0047 1E-07 68.8 12.8 162 568-739 30-233 (331)
392 PRK12422 chromosomal replicati 97.1 0.0031 6.6E-08 73.0 11.4 79 291-411 203-286 (445)
393 PF06309 Torsin: Torsin; Inte 97.1 0.0022 4.9E-08 60.8 8.4 52 535-593 26-77 (127)
394 KOG1051 Chaperone HSP104 and r 97.1 0.0026 5.6E-08 77.9 10.9 139 570-719 209-365 (898)
395 TIGR02012 tigrfam_recA protein 97.1 0.003 6.5E-08 69.7 10.6 77 567-643 53-148 (321)
396 PRK09361 radB DNA repair and r 97.1 0.0025 5.4E-08 66.8 9.4 37 567-603 21-60 (225)
397 KOG0481 DNA replication licens 97.0 0.0041 9E-08 70.5 11.2 173 535-717 332-528 (729)
398 COG5271 MDN1 AAA ATPase contai 97.0 0.0013 2.7E-08 82.4 7.7 136 571-717 890-1047(4600)
399 TIGR00678 holB DNA polymerase 97.0 0.0084 1.8E-07 61.0 12.8 72 289-407 95-166 (188)
400 COG2255 RuvB Holliday junction 97.0 0.0015 3.2E-08 69.5 7.2 31 65-97 52-82 (332)
401 KOG2543 Origin recognition com 97.0 0.0049 1.1E-07 68.1 11.4 58 536-604 8-65 (438)
402 cd00009 AAA The AAA+ (ATPases 97.0 0.0044 9.5E-08 58.6 10.0 38 64-103 18-58 (151)
403 PF13671 AAA_33: AAA domain; P 97.0 0.0012 2.5E-08 63.7 5.8 32 572-605 2-33 (143)
404 PRK08903 DnaA regulatory inact 97.0 0.0079 1.7E-07 63.1 12.4 53 23-91 14-66 (227)
405 PRK06620 hypothetical protein; 97.0 0.0032 6.9E-08 65.8 9.3 72 293-410 88-161 (214)
406 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0027 5.8E-08 68.5 8.7 93 531-638 57-159 (264)
407 cd00983 recA RecA is a bacter 96.9 0.0037 8.1E-08 69.0 10.0 76 568-643 54-148 (325)
408 PF05707 Zot: Zonular occluden 96.9 0.00074 1.6E-08 69.3 4.1 120 572-701 3-143 (193)
409 PHA02774 E1; Provisional 96.9 0.0093 2E-07 69.9 13.4 129 570-725 435-589 (613)
410 PRK05800 cobU adenosylcobinami 96.9 0.0063 1.4E-07 61.2 10.7 71 571-642 3-90 (170)
411 PRK14974 cell division protein 96.9 0.0087 1.9E-07 66.6 12.7 34 569-602 140-176 (336)
412 PRK14971 DNA polymerase III su 96.9 0.018 3.9E-07 69.3 16.1 72 293-411 124-195 (614)
413 cd01131 PilT Pilus retraction 96.9 0.0016 3.6E-08 67.0 6.1 68 571-638 3-84 (198)
414 PRK13947 shikimate kinase; Pro 96.9 0.00087 1.9E-08 66.9 3.9 31 571-601 3-33 (171)
415 COG3854 SpoIIIAA ncharacterize 96.8 0.0058 1.3E-07 63.2 9.6 71 570-640 138-230 (308)
416 PRK03839 putative kinase; Prov 96.8 0.00082 1.8E-08 67.9 3.5 31 571-601 2-32 (180)
417 COG4088 Predicted nucleotide k 96.8 0.0068 1.5E-07 61.8 9.8 23 571-593 3-25 (261)
418 PRK12724 flagellar biosynthesi 96.8 0.022 4.7E-07 64.9 15.0 33 570-602 224-260 (432)
419 TIGR02858 spore_III_AA stage I 96.8 0.0022 4.7E-08 69.3 6.7 69 570-638 112-204 (270)
420 PF13604 AAA_30: AAA domain; P 96.8 0.003 6.4E-08 65.1 7.5 98 570-683 19-132 (196)
421 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.0087 1.9E-07 63.4 11.2 36 567-602 19-57 (237)
422 cd00544 CobU Adenosylcobinamid 96.8 0.0063 1.4E-07 61.2 9.5 71 572-644 2-89 (169)
423 PRK00625 shikimate kinase; Pro 96.8 0.001 2.3E-08 67.1 3.9 31 571-601 2-32 (173)
424 cd01394 radB RadB. The archaea 96.8 0.0078 1.7E-07 62.7 10.5 36 568-603 18-56 (218)
425 PRK05642 DNA replication initi 96.8 0.014 3.1E-07 61.7 12.7 75 293-409 100-179 (234)
426 PRK10536 hypothetical protein; 96.8 0.0065 1.4E-07 64.7 9.9 22 571-592 76-97 (262)
427 cd00464 SK Shikimate kinase (S 96.8 0.0011 2.4E-08 64.7 3.7 31 571-601 1-31 (154)
428 PRK09087 hypothetical protein; 96.7 0.0043 9.3E-08 65.4 8.2 77 293-411 90-168 (226)
429 PRK13695 putative NTPase; Prov 96.7 0.0058 1.3E-07 61.4 8.8 23 571-593 2-24 (174)
430 KOG3347 Predicted nucleotide k 96.7 0.0011 2.4E-08 64.1 3.0 32 570-601 8-39 (176)
431 PRK14087 dnaA chromosomal repl 96.7 0.0098 2.1E-07 69.1 11.5 79 291-411 207-290 (450)
432 PF06745 KaiC: KaiC; InterPro 96.7 0.012 2.5E-07 61.8 11.1 74 567-640 17-127 (226)
433 PRK04841 transcriptional regul 96.7 0.02 4.3E-07 72.3 15.2 153 570-740 33-220 (903)
434 PRK04296 thymidine kinase; Pro 96.7 0.0086 1.9E-07 61.3 9.8 69 571-640 4-90 (190)
435 COG1373 Predicted ATPase (AAA+ 96.7 0.015 3.3E-07 66.4 12.7 133 571-723 39-186 (398)
436 PRK13949 shikimate kinase; Pro 96.7 0.0014 3E-08 65.9 3.7 32 570-601 2-33 (169)
437 TIGR00416 sms DNA repair prote 96.7 0.0096 2.1E-07 69.1 11.0 76 567-642 92-184 (454)
438 cd03283 ABC_MutS-like MutS-lik 96.7 0.008 1.7E-07 62.1 9.3 69 570-638 26-115 (199)
439 PRK06217 hypothetical protein; 96.7 0.0016 3.5E-08 66.1 4.0 32 570-601 2-33 (183)
440 PRK12723 flagellar biosynthesi 96.6 0.011 2.4E-07 67.0 11.1 113 569-695 174-309 (388)
441 PRK06762 hypothetical protein; 96.6 0.0043 9.4E-08 61.6 6.9 37 570-606 3-39 (166)
442 PRK14722 flhF flagellar biosyn 96.6 0.009 2E-07 67.3 10.1 24 570-593 138-161 (374)
443 COG2804 PulE Type II secretory 96.6 0.0065 1.4E-07 69.8 8.9 104 522-640 226-339 (500)
444 PRK09376 rho transcription ter 96.6 0.0036 7.7E-08 70.3 6.7 25 570-594 170-194 (416)
445 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0015 3.3E-08 65.9 3.5 34 572-607 2-35 (183)
446 PRK14532 adenylate kinase; Pro 96.6 0.0016 3.4E-08 66.3 3.6 35 571-607 2-36 (188)
447 COG0714 MoxR-like ATPases [Gen 96.6 0.015 3.1E-07 64.9 11.5 39 64-104 42-80 (329)
448 PRK13948 shikimate kinase; Pro 96.6 0.0021 4.5E-08 65.4 4.4 36 566-601 7-42 (182)
449 cd00046 DEXDc DEAD-like helica 96.6 0.0063 1.4E-07 56.8 7.5 23 571-593 2-24 (144)
450 COG0703 AroK Shikimate kinase 96.6 0.0018 3.9E-08 64.7 3.7 32 570-601 3-34 (172)
451 PRK06067 flagellar accessory p 96.6 0.02 4.4E-07 60.3 11.8 75 567-641 23-133 (234)
452 PRK09354 recA recombinase A; P 96.6 0.013 2.8E-07 65.4 10.5 75 568-642 59-152 (349)
453 cd02020 CMPK Cytidine monophos 96.5 0.002 4.3E-08 62.2 3.6 30 572-601 2-31 (147)
454 COG0563 Adk Adenylate kinase a 96.5 0.003 6.5E-08 64.0 5.0 33 571-605 2-34 (178)
455 PRK05973 replicative DNA helic 96.5 0.019 4.2E-07 60.8 11.3 37 567-603 62-101 (237)
456 COG0470 HolB ATPase involved i 96.5 0.033 7.1E-07 61.3 13.6 57 275-334 90-150 (325)
457 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.018 3.8E-07 62.0 11.1 36 567-602 34-72 (259)
458 PF00437 T2SE: Type II/IV secr 96.5 0.004 8.6E-08 67.2 6.1 97 530-638 100-207 (270)
459 PRK14531 adenylate kinase; Pro 96.5 0.0024 5.2E-08 64.8 4.1 34 570-605 3-36 (183)
460 PF13479 AAA_24: AAA domain 96.5 0.012 2.6E-07 61.4 9.2 68 570-641 4-81 (213)
461 TIGR02533 type_II_gspE general 96.5 0.0089 1.9E-07 70.0 9.1 94 530-638 218-321 (486)
462 cd00227 CPT Chloramphenicol (C 96.5 0.0026 5.5E-08 64.1 4.0 35 570-604 3-37 (175)
463 CHL00081 chlI Mg-protoporyphyr 96.5 0.039 8.5E-07 61.7 13.6 50 24-92 14-63 (350)
464 TIGR01420 pilT_fam pilus retra 96.5 0.0047 1E-07 69.2 6.4 69 570-638 123-205 (343)
465 cd02021 GntK Gluconate kinase 96.4 0.0022 4.9E-08 62.5 3.3 28 572-599 2-29 (150)
466 PRK00771 signal recognition pa 96.4 0.023 4.9E-07 65.5 11.9 36 568-603 94-132 (437)
467 PRK06581 DNA polymerase III su 96.4 0.036 7.8E-07 58.4 12.1 134 568-719 14-163 (263)
468 cd01428 ADK Adenylate kinase ( 96.4 0.0024 5.2E-08 64.9 3.5 32 572-605 2-33 (194)
469 cd00984 DnaB_C DnaB helicase C 96.4 0.024 5.1E-07 59.9 11.2 36 567-602 11-50 (242)
470 PRK14530 adenylate kinase; Pro 96.4 0.0027 5.8E-08 66.2 3.9 30 571-600 5-34 (215)
471 PF13191 AAA_16: AAA ATPase do 96.4 0.0024 5.2E-08 64.0 3.5 59 536-605 2-63 (185)
472 PRK06547 hypothetical protein; 96.4 0.0031 6.8E-08 63.6 4.2 34 568-601 14-47 (172)
473 PF00448 SRP54: SRP54-type pro 96.4 0.019 4.1E-07 59.1 9.9 71 569-639 1-94 (196)
474 PTZ00088 adenylate kinase 1; P 96.3 0.0032 6.9E-08 66.5 4.0 31 570-600 7-37 (229)
475 TIGR01313 therm_gnt_kin carboh 96.3 0.0025 5.3E-08 63.2 2.9 28 572-599 1-28 (163)
476 cd01393 recA_like RecA is a b 96.3 0.02 4.3E-07 59.8 9.9 37 568-604 18-63 (226)
477 COG1485 Predicted ATPase [Gene 96.3 0.024 5.1E-07 62.5 10.6 101 566-683 62-170 (367)
478 cd01122 GP4d_helicase GP4d_hel 96.3 0.019 4.1E-07 61.8 10.0 35 568-602 29-67 (271)
479 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.015 3.3E-07 61.1 9.0 38 567-604 17-63 (235)
480 PRK04328 hypothetical protein; 96.3 0.034 7.3E-07 59.5 11.5 36 567-602 21-59 (249)
481 COG1102 Cmk Cytidylate kinase 96.3 0.0031 6.7E-08 61.9 3.2 29 571-599 2-30 (179)
482 PRK03731 aroL shikimate kinase 96.3 0.0037 8.1E-08 62.4 4.0 32 570-601 3-34 (171)
483 PRK10436 hypothetical protein; 96.3 0.014 3E-07 67.8 9.1 94 530-638 194-297 (462)
484 COG5245 DYN1 Dynein, heavy cha 96.2 0.021 4.6E-07 71.6 10.6 138 569-719 1494-1660(3164)
485 PRK13946 shikimate kinase; Pro 96.2 0.0038 8.1E-08 63.5 3.8 32 570-601 11-42 (184)
486 PRK14528 adenylate kinase; Pro 96.2 0.0042 9E-08 63.4 4.1 30 570-599 2-31 (186)
487 cd03281 ABC_MSH5_euk MutS5 hom 96.2 0.036 7.7E-07 57.9 11.1 22 570-591 30-51 (213)
488 PRK13900 type IV secretion sys 96.2 0.015 3.3E-07 64.7 8.8 69 570-638 161-245 (332)
489 PRK13764 ATPase; Provisional 96.2 0.0077 1.7E-07 71.7 6.5 68 570-638 258-334 (602)
490 PRK08233 hypothetical protein; 96.2 0.025 5.5E-07 56.7 9.5 32 570-601 4-36 (182)
491 PRK05057 aroK shikimate kinase 96.2 0.0044 9.6E-08 62.4 3.9 33 570-602 5-37 (172)
492 PRK11889 flhF flagellar biosyn 96.2 0.036 7.8E-07 62.6 11.3 72 569-640 241-332 (436)
493 TIGR02525 plasmid_TraJ plasmid 96.2 0.0085 1.8E-07 67.6 6.5 69 570-638 150-235 (372)
494 TIGR02782 TrbB_P P-type conjug 96.2 0.0076 1.6E-07 66.2 6.0 69 570-638 133-214 (299)
495 TIGR03574 selen_PSTK L-seryl-t 96.2 0.0092 2E-07 63.7 6.5 34 572-605 2-38 (249)
496 cd02027 APSK Adenosine 5'-phos 96.2 0.012 2.6E-07 57.8 6.8 33 572-604 2-37 (149)
497 TIGR02538 type_IV_pilB type IV 96.2 0.014 3E-07 69.8 8.5 101 523-638 285-395 (564)
498 PRK07952 DNA replication prote 96.2 0.014 3E-07 62.2 7.6 88 5-105 50-140 (244)
499 cd03243 ABC_MutS_homologs The 96.1 0.024 5.1E-07 58.5 9.2 22 570-591 30-51 (202)
500 TIGR03880 KaiC_arch_3 KaiC dom 96.1 0.047 1E-06 57.1 11.5 37 567-603 14-53 (224)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-74 Score=638.48 Aligned_cols=564 Identities=30% Similarity=0.441 Sum_probs=446.4
Q ss_pred CccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 003253 19 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 98 (836)
Q Consensus 19 ~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~ 98 (836)
..+.+|+|.+|++. +.|-..|.+-+ .|++||+...|+- +. .++++||.||||+ +++|||.|+|.++|+||+-+
T Consensus 182 ~~~snv~f~diGG~--d~~~~el~~li-~~i~~Pe~~~~lG-v~-PprGvLlHGPPGC--GKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL--DKTLAELCELI-IHIKHPEVFSSLG-VR-PPRGVLLHGPPGC--GKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh--HHHHHHHHHHH-HHhcCchhHhhcC-CC-CCCceeeeCCCCc--cHHHHHHHHhhhcCCceEee
Confidence 55669999999999 88888887765 4599999976653 33 4789999999999 99999999999999999999
Q ss_pred eccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 003253 99 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 178 (836)
Q Consensus 99 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (836)
-.+.+.+|+
T Consensus 255 sApeivSGv----------------------------------------------------------------------- 263 (802)
T KOG0733|consen 255 SAPEIVSGV----------------------------------------------------------------------- 263 (802)
T ss_pred cchhhhccc-----------------------------------------------------------------------
Confidence 876665532
Q ss_pred ccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccc
Q 003253 179 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 258 (836)
Q Consensus 179 ~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~ 258 (836)
.|
T Consensus 264 --------------SG---------------------------------------------------------------- 265 (802)
T KOG0733|consen 264 --------------SG---------------------------------------------------------------- 265 (802)
T ss_pred --------------Cc----------------------------------------------------------------
Confidence 11
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc----cCcchhhHHHHH----HhcCC------CcE
Q 003253 259 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSR----LEKLP------DKV 324 (836)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~----~~~~~~~~l~~~----l~~l~------g~v 324 (836)
| .+.-|+.||+-|.+ ..||||||||||.+-. .+.|+-..+..+ |+.+. .+|
T Consensus 266 ----------E--SEkkiRelF~~A~~---~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~V 330 (802)
T KOG0733|consen 266 ----------E--SEKKIRELFDQAKS---NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPV 330 (802)
T ss_pred ----------c--cHHHHHHHHHHHhc---cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCe
Confidence 1 47789999999999 9999999999999554 233333333333 34442 489
Q ss_pred EEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHH
Q 003253 325 IVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLAS 404 (836)
Q Consensus 325 ~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~I 404 (836)
+|||||||||+ ||+|+||+|| |.++|++..|++.+|.+|
T Consensus 331 lVIgATnRPDs----------------------lDpaLRRaGR-------------------FdrEI~l~vP~e~aR~~I 369 (802)
T KOG0733|consen 331 LVIGATNRPDS----------------------LDPALRRAGR-------------------FDREICLGVPSETAREEI 369 (802)
T ss_pred EEEecCCCCcc----------------------cCHHHhcccc-------------------ccceeeecCCchHHHHHH
Confidence 99999999994 9999999999 999999999999999999
Q ss_pred HHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCC-----CCcc--
Q 003253 405 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD-----PDAR-- 477 (836)
Q Consensus 405 lk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~-----~~~~-- 477 (836)
|+++. +++.+.-+++..+.+..|.||-|+||..||..+.. .|+.+++.....|. ..+.
T Consensus 370 L~~~~----~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~-----------vAikR~ld~~~~p~~~~~~~ed~~~ 434 (802)
T KOG0733|consen 370 LRIIC----RGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAF-----------VAIKRILDQSSSPLTKVPISEDSSN 434 (802)
T ss_pred HHHHH----hhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHH-----------HHHHHHhhcccCccccCCccccccC
Confidence 99887 66778889999999999999999999999998887 45555554322111 0000
Q ss_pred cccccch--hh-----h---hh-hHH-HHHHHhhhhh--hccccccCCHHHHHHHHh--------cCcCCCCCCcccchh
Q 003253 478 LVLSCES--IQ-----Y---GI-GIF-QAIQNESKSL--KKSLKDVVTENEFEKRLL--------ADVIPPSDIGVTFDD 535 (836)
Q Consensus 478 ~~i~~~~--~~-----~---~~-~~~-~~i~~~~~~~--~~~~~~~v~~~d~~~~l~--------~~ii~~~~~~~~~~d 535 (836)
.-...++ +. . .+ .+. +.+.....+. .......+.-+||+.++. ++++ ..++++|+|
T Consensus 435 ~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~--tVPdVtW~d 512 (802)
T KOG0733|consen 435 KDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA--TVPDVTWDD 512 (802)
T ss_pred CCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce--ecCCCChhh
Confidence 0000000 11 0 00 011 1111111111 111122467888988663 1221 245899999
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHH
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK 615 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~ 615 (836)
|+++++++.+|...|.+|.++|+.|...++.. |.||||+||||||||.||+|+|++.|++|+.|..++|+++|+|++|.
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESEr 591 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESER 591 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHH
Confidence 99999999999999999999999999988765 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHh--
Q 003253 616 YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR-- 693 (836)
Q Consensus 616 ~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~r-- 693 (836)
+++++|..|+.++|||||+||||.|++.|+... .....+++++|+++|||+.. +..|.|||+||+|+.+||+++|
T Consensus 592 AVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~--R~gV~viaATNRPDiIDpAiLRPG 668 (802)
T KOG0733|consen 592 AVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEE--RRGVYVIAATNRPDIIDPAILRPG 668 (802)
T ss_pred HHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhccccc--ccceEEEeecCCCcccchhhcCCC
Confidence 999999999999999999999999999986544 66778999999999999864 4789999999999999999999
Q ss_pred hccccccCCCCCHHHHHHHHHHHHh--hCCCCCcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 694 RLPRRLMVNLPDAPNRAKILQVILA--KEDLSPDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIKEILEKEKKERAAA 769 (836)
Q Consensus 694 Rf~~~I~v~~P~~~eR~~Il~~~l~--~~~l~~d~dl~~LA~~t~--G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a 769 (836)
||++.++|++|+.++|..||+.+++ +..+.+|+|++.||..+. ||+|+||..||++|...|+++.+......
T Consensus 669 RlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~---- 744 (802)
T KOG0733|consen 669 RLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSS---- 744 (802)
T ss_pred ccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcccc----
Confidence 9999999999999999999999999 667789999999998876 99999999999999999999866522111
Q ss_pred HhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCCCc
Q 003253 770 MAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSR 827 (836)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~~r 827 (836)
. ....-......+++.||++|+++++||++...-. -|...+..+|+.-..
T Consensus 745 ----~--~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~--~Yd~l~k~~~L~~~~ 794 (802)
T KOG0733|consen 745 ----E--DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRK--KYDRLNKSRSLSTAT 794 (802)
T ss_pred ----C--cccceeeeeeeecHHHHHHHHHhcCCCccHHHHH--HHHHHhhhhcccccC
Confidence 0 1111011134689999999999999999977543 456666776764443
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-66 Score=584.13 Aligned_cols=491 Identities=30% Similarity=0.481 Sum_probs=413.2
Q ss_pred ccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 22 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 22 ~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
-.++ +.+.+. ..--..+.+.+.++|.++...+.. =.+.++++||+||||| ++++|++|.|++.+|.|+.+...
T Consensus 180 ~~~~-~~~gg~--~~~~~~i~e~v~~pl~~~~~~~s~--g~~~prg~Ll~gppg~--Gkt~l~~aVa~e~~a~~~~i~~p 252 (693)
T KOG0730|consen 180 PEVG-DDIGGL--KRQLSVIRELVELPLRHPALFKSI--GIKPPRGLLLYGPPGT--GKTFLVRAVANEYGAFLFLINGP 252 (693)
T ss_pred cccc-cccchh--HHHHHHHHHHHHhhhcchhhhhhc--CCCCCCCccccCCCCC--ChHHHHHHHHHHhCceeEecccH
Confidence 4455 566665 566678899999999999885322 2456899999999999 99999999999999999999876
Q ss_pred ccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 003253 102 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 181 (836)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (836)
.+.+
T Consensus 253 eli~---------------------------------------------------------------------------- 256 (693)
T KOG0730|consen 253 ELIS---------------------------------------------------------------------------- 256 (693)
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 5554
Q ss_pred cccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccccc
Q 003253 182 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 261 (836)
Q Consensus 182 ~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (836)
+|-|+
T Consensus 257 ---------k~~gE------------------------------------------------------------------ 261 (693)
T KOG0730|consen 257 ---------KFPGE------------------------------------------------------------------ 261 (693)
T ss_pred ---------hcccc------------------------------------------------------------------
Confidence 33333
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhccCCC-CeEEEEcCchhhhcc-------CcchhhHHHHHHhcCC--CcEEEEeeec
Q 003253 262 RLENSGTEDLDKLLINTLFEVVFSESRSC-PFILFMKDAEKSIAG-------NSDSYSTFKSRLEKLP--DKVIVIGSHT 331 (836)
Q Consensus 262 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-p~Ilfi~ei~~~l~~-------~~~~~~~l~~~l~~l~--g~v~vIgs~~ 331 (836)
.+..++..|+.+.+ .+ |.||||||+|.+... ..+....+.+.|+.+. ++|+||++||
T Consensus 262 ----------te~~LR~~f~~a~k---~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atn 328 (693)
T KOG0730|consen 262 ----------TESNLRKAFAEALK---FQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATN 328 (693)
T ss_pred ----------hHHHHHHHHHHHhc---cCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecC
Confidence 35667788888888 88 999999999995541 2334445555566666 7999999999
Q ss_pred cCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 332 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 332 ~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
+++ .||+|+|| || |++.++|+.|+..+|+.|++.+.
T Consensus 329 rp~----------------------sld~alRR-gR-------------------fd~ev~IgiP~~~~RldIl~~l~-- 364 (693)
T KOG0730|consen 329 RPD----------------------SLDPALRR-GR-------------------FDREVEIGIPGSDGRLDILRVLT-- 364 (693)
T ss_pred Ccc----------------------ccChhhhc-CC-------------------CcceeeecCCCchhHHHHHHHHH--
Confidence 998 49999999 99 99999999999999999999888
Q ss_pred hhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccccccchhhhhhhH
Q 003253 412 DSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGI 491 (836)
Q Consensus 412 ~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~i~~~~~~~~~~~ 491 (836)
++++...+.++...+-.++||.|+||..+|..+..-..... .+++..+.
T Consensus 365 --k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~~---------------------------~~~~~~A~-- 413 (693)
T KOG0730|consen 365 --KKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRRT---------------------------LEIFQEAL-- 413 (693)
T ss_pred --HhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhhh---------------------------HHHHHHHH--
Confidence 56666677888899999999999999999998777221111 11111111
Q ss_pred HHHHHHhhhhhhccccccCCHHHHHHHHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCce
Q 003253 492 FQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG 571 (836)
Q Consensus 492 ~~~i~~~~~~~~~~~~~~v~~~d~~~~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~ 571 (836)
..+.+ .. +..-+ .+.++++|+||+|++++|.+|++.|.+|++.|+.|.+.++ .|+++
T Consensus 414 -~~i~p---------------sa----~Re~~--ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkG 470 (693)
T KOG0730|consen 414 -MGIRP---------------SA----LREIL--VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKG 470 (693)
T ss_pred -hcCCc---------------hh----hhhee--ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCce
Confidence 11101 00 11111 3445799999999999999999999999999999999885 56699
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHH
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHE 651 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~ 651 (836)
||||||||||||++|+|+|++.+++|+.+.+++++++|+|++|..++.+|+.|+..+|||||+||||.+.+.|+... ..
T Consensus 471 VLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~-~~ 549 (693)
T KOG0730|consen 471 VLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS-SG 549 (693)
T ss_pred EEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997433 37
Q ss_pred HHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHH
Q 003253 652 AMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFD 729 (836)
Q Consensus 652 ~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~ 729 (836)
+..+++++++.+|||+... .+|+|||+||+|+.||++++| |||+.|+|++|+.+.|.+||+.++++.++.+++|++
T Consensus 550 v~~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~ 627 (693)
T KOG0730|consen 550 VTDRVLSQLLTEMDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLE 627 (693)
T ss_pred hHHHHHHHHHHHccccccc--CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHH
Confidence 8899999999999999654 689999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccc
Q 003253 730 AIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSES 808 (836)
Q Consensus 730 ~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~ 808 (836)
.||+.|+||||+||.++|++|+..|+++.++ ...++.+||++|++.+++|.+...
T Consensus 628 ~La~~T~g~SGAel~~lCq~A~~~a~~e~i~------------------------a~~i~~~hf~~al~~~r~s~~~~~ 682 (693)
T KOG0730|consen 628 ELAQATEGYSGAEIVAVCQEAALLALRESIE------------------------ATEITWQHFEEALKAVRPSLTSEL 682 (693)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHHhcc------------------------cccccHHHHHHHHHhhcccCCHHH
Confidence 9999999999999999999999999997433 346899999999999999998763
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.4e-57 Score=549.26 Aligned_cols=539 Identities=28% Similarity=0.463 Sum_probs=421.9
Q ss_pred ccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 22 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 22 ~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
-+++|+++.++ +..+..|.+.+..+++|+++.+.. . ...++.|||+||||| ++++||||||++.+++++.++.+
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~-g-i~~~~giLL~GppGt--GKT~laraia~~~~~~~i~i~~~ 246 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHL-G-IEPPKGVLLYGPPGT--GKTLLAKAVANEAGAYFISINGP 246 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhc-C-CCCCceEEEECCCCC--ChHHHHHHHHHHhCCeEEEEecH
Confidence 57999999999 999999999999999999986421 1 245788999999999 99999999999999999888864
Q ss_pred ccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 003253 102 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 181 (836)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (836)
.+.+
T Consensus 247 ~i~~---------------------------------------------------------------------------- 250 (733)
T TIGR01243 247 EIMS---------------------------------------------------------------------------- 250 (733)
T ss_pred HHhc----------------------------------------------------------------------------
Confidence 4433
Q ss_pred cccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccccc
Q 003253 182 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 261 (836)
Q Consensus 182 ~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (836)
+|+|.
T Consensus 251 ---------~~~g~------------------------------------------------------------------ 255 (733)
T TIGR01243 251 ---------KYYGE------------------------------------------------------------------ 255 (733)
T ss_pred ---------ccccH------------------------------------------------------------------
Confidence 22222
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc--------chhhHHHHHHhcC--CCcEEEEeeec
Q 003253 262 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSRLEKL--PDKVIVIGSHT 331 (836)
Q Consensus 262 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~--------~~~~~l~~~l~~l--~g~v~vIgs~~ 331 (836)
....+..+|+.+.. ..|+||||||||.+...+. ++.+.|...|+.+ .++|+|||+||
T Consensus 256 ----------~~~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn 322 (733)
T TIGR01243 256 ----------SEERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATN 322 (733)
T ss_pred ----------HHHHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecC
Confidence 34567888998888 8999999999999765322 2334455555544 35899999999
Q ss_pred cCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 332 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 332 ~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
+++ .+|+|++||+| |...++|.+|+.++|.+||+.+.
T Consensus 323 ~~~----------------------~ld~al~r~gR-------------------fd~~i~i~~P~~~~R~~Il~~~~-- 359 (733)
T TIGR01243 323 RPD----------------------ALDPALRRPGR-------------------FDREIVIRVPDKRARKEILKVHT-- 359 (733)
T ss_pred Chh----------------------hcCHHHhCchh-------------------ccEEEEeCCcCHHHHHHHHHHHh--
Confidence 987 48999999999 99999999999999999999776
Q ss_pred hhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcC-CCCC----C---Ccccccccc
Q 003253 412 DSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQN-PEAD----P---DARLVLSCE 483 (836)
Q Consensus 412 ~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~-~d~~----~---~~~~~i~~~ 483 (836)
....+..+.+....+..++||.+.||..+|..+... |+.+.+... .+.. + ...+.+...
T Consensus 360 --~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~-----------al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~ 426 (733)
T TIGR01243 360 --RNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMA-----------ALRRFIREGKINFEAEEIPAEVLKELKVTMK 426 (733)
T ss_pred --cCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHH-----------HHHHHhhccccccccccccchhcccccccHH
Confidence 345555666677778888999999998888776651 222222111 0000 0 011112222
Q ss_pred hhhhhhhHHHHHHHhhhhhhccccccCCHHHHHHHHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcC
Q 003253 484 SIQYGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKG 563 (836)
Q Consensus 484 ~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~d~~~~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~ 563 (836)
++..++ +.+.+.. +.. +....+.++|+|++|++.+++.|++.+.+|+.+++.|...
T Consensus 427 df~~Al---~~v~ps~-------------------~~~--~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~ 482 (733)
T TIGR01243 427 DFMEAL---KMVEPSA-------------------IRE--VLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM 482 (733)
T ss_pred HHHHHH---hhccccc-------------------cch--hhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc
Confidence 222111 1110000 000 0011235799999999999999999999999999999887
Q ss_pred CCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcC
Q 003253 564 QLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGR 643 (836)
Q Consensus 564 ~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~ 643 (836)
+. ++++++|||||||||||++|+++|++++.+|+.+.++++.++|+|+++..++.+|..|+..+|+||||||||.+++.
T Consensus 483 g~-~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~ 561 (733)
T TIGR01243 483 GI-RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPA 561 (733)
T ss_pred CC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhcc
Confidence 64 45689999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCC
Q 003253 644 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKED 721 (836)
Q Consensus 644 r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~ 721 (836)
+..........+++++++..++++.. ..+++||+|||+++.+|++++| ||+..+++++|+.++|.+||+.++.+..
T Consensus 562 r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~ 639 (733)
T TIGR01243 562 RGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP 639 (733)
T ss_pred CCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC
Confidence 76554455677899999999999754 3679999999999999999998 9999999999999999999999998888
Q ss_pred CCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 003253 722 LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 801 (836)
Q Consensus 722 l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~ 801 (836)
+..++++..||..|+||+|+||.++|++|+..++++.+.......... .. .......+++++||..|+++++
T Consensus 640 ~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~---~~-----~~~~~~~~i~~~~f~~al~~~~ 711 (733)
T TIGR01243 640 LAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEV---GE-----EEFLKDLKVEMRHFLEALKKVK 711 (733)
T ss_pred CCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhc---cc-----ccccccCcccHHHHHHHHHHcC
Confidence 888999999999999999999999999999999998655332111000 00 0011235799999999999999
Q ss_pred cCccccccchhhHHHHHHHhcC
Q 003253 802 ASVSSESVNMSELLQWNELYGE 823 (836)
Q Consensus 802 pS~~~~~~~~~~~~~W~~i~G~ 823 (836)
||++.+. +..+.+|...+|.
T Consensus 712 ps~~~~~--~~~~~~~~~~~~~ 731 (733)
T TIGR01243 712 PSVSKED--MLRYERLAKELKR 731 (733)
T ss_pred CCCCHHH--HHHHHHHHHHhcc
Confidence 9998774 5679999998863
No 4
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-56 Score=476.61 Aligned_cols=380 Identities=59% Similarity=0.929 Sum_probs=346.2
Q ss_pred hhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccccccchhhhhhhHHHHHHHhhhhhhcccc-ccCCHHHHHHHHh
Q 003253 442 LCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLK-DVVTENEFEKRLL 520 (836)
Q Consensus 442 Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~v~~~d~~~~l~ 520 (836)
.|..+..+....++.++.+|++||+.....+..+.+..+..+++......++..... .+.+ ..+..++++..+.
T Consensus 4 ~~~~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~ 78 (386)
T KOG0737|consen 4 SFTKDDVLITSLIRKIVAAAISHHLVHLLVPRLDPNLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIA 78 (386)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhccccccChhhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhh
Confidence 456666777889999999999999998776664447778888888776655554322 2233 3688999999999
Q ss_pred cCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 521 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 521 ~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..+++|.++.++|+||+|++.++++|++.|..|+++|+.|..+++.+|++||||+||||||||++|+|+|++.|++|+.|
T Consensus 79 s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred hcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEec
Q 003253 601 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 680 (836)
Q Consensus 601 ~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaT 680 (836)
.++.+.++|+|++++.++.+|..|.+.+|+||||||+|.+++.| ...++++...+.++||..|||+..+++.+|+|+|+
T Consensus 159 ~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgA 237 (386)
T KOG0737|consen 159 SVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGA 237 (386)
T ss_pred eccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeC
Confidence 99999999999999999999999999999999999999999999 78899999999999999999999998889999999
Q ss_pred cCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 003253 681 TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 760 (836)
Q Consensus 681 Tn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~ 760 (836)
||+|.++|++++||++++++|++|+..+|.+||+.+++++.+.+++|+..+|.+|+||||+||+++|..|++.++|+++.
T Consensus 238 TNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 238 TNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred CCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCCCc
Q 003253 761 KE--KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSR 827 (836)
Q Consensus 761 ~~--~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~~r 827 (836)
.+ ..+......+..+.+....+...|+++++||..|+.+|.+++..+...|....+|++.||++++|
T Consensus 318 ~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e~~sr 386 (386)
T KOG0737|consen 318 SETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGEGGSR 386 (386)
T ss_pred hcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhccccCC
Confidence 87 33444455556666655555668999999999999999999999999999999999999999987
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-53 Score=482.84 Aligned_cols=451 Identities=28% Similarity=0.453 Sum_probs=351.2
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc-----chhhHHHHHHh----c-CCCcEEEEeeeccCCCccccCCC
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----DSYSTFKSRLE----K-LPDKVIVIGSHTHTDNRKEKSHP 342 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~-----~~~~~l~~~l~----~-l~g~v~vIgs~~~~d~~~~~~~~ 342 (836)
.--+++.|+.++. .+|+|||+.+.|-+...+. +....+.-.|. + -.++++|||+++..++
T Consensus 476 etkl~~~f~~a~~---~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~------- 545 (953)
T KOG0736|consen 476 ETKLQAIFSRARR---CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED------- 545 (953)
T ss_pred HHHHHHHHHHHhh---cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc-------
Confidence 3445678888888 8999999999997443221 12222222222 2 1258999999998863
Q ss_pred CCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhhhhhhccCCc
Q 003253 343 GGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNL 422 (836)
Q Consensus 343 ~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~~~~~~~~n~ 422 (836)
+-..|...|...|.++.|++++|++||+.++ ....+..++
T Consensus 546 ------------------------------------lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~----~~~~~n~~v 585 (953)
T KOG0736|consen 546 ------------------------------------LPADIQSLFLHEIEVPALSEEQRLEILQWYL----NHLPLNQDV 585 (953)
T ss_pred ------------------------------------CCHHHHHhhhhhccCCCCCHHHHHHHHHHHH----hccccchHH
Confidence 2345888899999999999999999999877 456677788
Q ss_pred hhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCC-CCcccccccchhhhhhhHHHHHHHhhhh
Q 003253 423 NHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD-PDARLVLSCESIQYGIGIFQAIQNESKS 501 (836)
Q Consensus 423 ~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~-~~~~~~i~~~~~~~~~~~~~~i~~~~~~ 501 (836)
.....+..+.|++-.||..+.... +-+...+|...-...-+....+.. ......+..++|..++...+
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~---s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~-------- 654 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHS---SLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQ-------- 654 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCc---hHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHH--------
Confidence 888889999999999999875544 334333333222111111111111 11223444444443332111
Q ss_pred hhccccccCCHHHHHHHHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCCh
Q 003253 502 LKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 581 (836)
Q Consensus 502 ~~~~~~~~v~~~d~~~~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtG 581 (836)
++|. ..+-.|..++++|+||+|++++|.++.+.|..|+++|++|..+ .++..|||||||||||
T Consensus 655 -----------~~fs----~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPPGTG 717 (953)
T KOG0736|consen 655 -----------KEFS----DAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPPGTG 717 (953)
T ss_pred -----------Hhhh----hhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCCCCc
Confidence 1222 2333455668999999999999999999999999999999865 3445799999999999
Q ss_pred HHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCc-hHHHHHHHHHHH
Q 003253 582 KTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG-EHEAMRKMKNEF 660 (836)
Q Consensus 582 KT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~-~~~~~~~il~~l 660 (836)
||.+|+|+|.++..+|+.|..+++.++|+|++|++++.+|+.|+..+|||||+||+|++.+.|...+ ....+.++..++
T Consensus 718 KTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQL 797 (953)
T KOG0736|consen 718 KTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQL 797 (953)
T ss_pred hHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987654 456789999999
Q ss_pred HHHhcCCcccCcccEEEEeccCCCCCCcHHHHh--hccccccCCCC-CHHHHHHHHHHHHhhCCCCCcccHHHHHHHcC-
Q 003253 661 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLP-DAPNRAKILQVILAKEDLSPDVDFDAIANMTD- 736 (836)
Q Consensus 661 l~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P-~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~- 736 (836)
+.++||+.......|+|||+||+|+.|||+++| |||+-+++.++ +.+.+..+|+.+.++..+++++++.++|+.+.
T Consensus 798 LAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~ 877 (953)
T KOG0736|consen 798 LAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPP 877 (953)
T ss_pred HHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCc
Confidence 999999987677899999999999999999999 99999999876 67788999999999999999999999999986
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccc
Q 003253 737 GYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVN 810 (836)
Q Consensus 737 G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~ 810 (836)
.|+|+|+..||..|.+.|++|.+..-.... .+......+...|+|+||.+|.++++||++.+...
T Consensus 878 ~~TGADlYsLCSdA~l~AikR~i~~ie~g~---------~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~ 942 (953)
T KOG0736|consen 878 NMTGADLYSLCSDAMLAAIKRTIHDIESGT---------ISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELL 942 (953)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhcc---------ccccccCCceEEEEHHHHHHHHHhcCCcccHHHHH
Confidence 899999999999999999999765433211 01112233446799999999999999999977443
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-47 Score=439.62 Aligned_cols=411 Identities=35% Similarity=0.532 Sum_probs=328.6
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCcc--------hhhHHHHHHhcC-CCcEEEEeeeccCCCccccCCC
Q 003253 272 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSD--------SYSTFKSRLEKL-PDKVIVIGSHTHTDNRKEKSHP 342 (836)
Q Consensus 272 ~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~~--------~~~~l~~~l~~l-~g~v~vIgs~~~~d~~~~~~~~ 342 (836)
....+..+|+.+.. .+|.|+|+||+|.+...... ....+...++.+ .+.|+++|++++++
T Consensus 61 ~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-------- 129 (494)
T COG0464 61 SELRLRELFEEAEK---LAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-------- 129 (494)
T ss_pred HHHHHHHHHHHHHH---hCCCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcc--------
Confidence 57888889999999 88899999999997773333 233333444333 34599999999887
Q ss_pred CCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhhhhhhccCCc
Q 003253 343 GGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNL 422 (836)
Q Consensus 343 ~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~~~~~~~~n~ 422 (836)
.+|+|+++|++ |...+++..|+...|++|++.+. +.+....+.
T Consensus 130 --------------~~~~a~~~~~~-------------------~~~~~~~~~~~~~~~~ei~~~~~----~~~~~~~~~ 172 (494)
T COG0464 130 --------------GLDPAKRRPGR-------------------FDREIEVNLPDEAGRLEILQIHT----RLMFLGPPG 172 (494)
T ss_pred --------------ccChhHhCccc-------------------cceeeecCCCCHHHHHHHHHHHH----hcCCCcccc
Confidence 69999999999 99999999999999999999887 333344344
Q ss_pred hhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccccccchhhhhhhHHHHHHHhhhhh
Q 003253 423 NHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSL 502 (836)
Q Consensus 423 ~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ 502 (836)
.....+..+.|+.+.|+..+|.. |...++.+.. .......
T Consensus 173 ~~~~~a~~~~~~~~~~~~~l~~~---------------~~~~~~~r~~-~~~~~~~------------------------ 212 (494)
T COG0464 173 TGKTLAARTVGKSGADLGALAKE---------------AALRELRRAI-DLVGEYI------------------------ 212 (494)
T ss_pred cHHHHHHhcCCccHHHHHHHHHH---------------HHHHHHHhhh-ccCcccc------------------------
Confidence 44455555666666666555543 3333333211 0000011
Q ss_pred hccccccCCHHHHHHHHhc----CcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCC
Q 003253 503 KKSLKDVVTENEFEKRLLA----DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 578 (836)
Q Consensus 503 ~~~~~~~v~~~d~~~~l~~----~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPp 578 (836)
.++.+++...+.. ..+....+.++|++++|++.+++.+++.+.+++.+++.|...+ .+++.++||||||
T Consensus 213 ------~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpP 285 (494)
T COG0464 213 ------GVTEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPP 285 (494)
T ss_pred ------cccHHHHHHHHHhcCcccccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCC
Confidence 1223333332211 1233455679999999999999999999999999999987644 4566899999999
Q ss_pred CChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHH
Q 003253 579 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN 658 (836)
Q Consensus 579 GtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~ 658 (836)
|||||++|+++|++++.+|+.+..+++.++|+|+++++++.+|..|++.+||||||||+|.+++.+..... ....++++
T Consensus 286 GtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-~~~~r~~~ 364 (494)
T COG0464 286 GTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED-GSGRRVVG 364 (494)
T ss_pred CCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc-hHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988864332 22368999
Q ss_pred HHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCC--CCcccHHHHHHH
Q 003253 659 EFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDL--SPDVDFDAIANM 734 (836)
Q Consensus 659 ~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l--~~d~dl~~LA~~ 734 (836)
+++..++++... ..|+||++||.|+.+|++++| ||+..++|++|+..+|.+||+.++..... ..++++..+++.
T Consensus 365 ~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~ 442 (494)
T COG0464 365 QLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEI 442 (494)
T ss_pred HHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHH
Confidence 999999998654 669999999999999999999 99999999999999999999999985543 478999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcc
Q 003253 735 TDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 805 (836)
Q Consensus 735 t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~ 805 (836)
++||+|+||..+|++|++.++++.. ...++++||..|++++.|++.
T Consensus 443 t~~~sgadi~~i~~ea~~~~~~~~~-------------------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 443 TEGYSGADIAALVREAALEALREAR-------------------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhc-------------------------cCCccHHHHHHHHHhcCCCCC
Confidence 9999999999999999999988732 257999999999999999976
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-46 Score=400.30 Aligned_cols=283 Identities=40% Similarity=0.707 Sum_probs=256.0
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.+.|+||.|+.++|+-|++.|..|+..|+.|. ++.+|.++||++||||||||+||+|+|.+++..|+.|+.+.+.+
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 3468999999999999999999999999999997 56899999999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCc--ccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT--ERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~--~~vlVIaTTn~~~ 685 (836)
+|-|++|+.++-+|++|+.++|++|||||||.|+.+|+...+|++.+++..+|+++|||+..... ..|+|+|+||-||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999875432 3489999999999
Q ss_pred CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKE 765 (836)
Q Consensus 686 ~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~ 765 (836)
+||++++|||.++|++|+|+.+.|..+++..+....+.++++++.||..++||||+||.++|+.|.+.++||.+......
T Consensus 364 diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ 443 (491)
T KOG0738|consen 364 DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPR 443 (491)
T ss_pred chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876543322
Q ss_pred HHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcC
Q 003253 766 RAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGE 823 (836)
Q Consensus 766 ~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~ 823 (836)
.....+ ...-..|++++||+.|+.+++||++.. .+..+.+|.+-||.
T Consensus 444 ei~~la---------kE~~~~pv~~~Dfe~Al~~v~pSvs~~--d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 444 EIRQLA---------KEEPKMPVTNEDFEEALRKVRPSVSAA--DLEKYEKWMDEFGS 490 (491)
T ss_pred Hhhhhh---------hhccccccchhhHHHHHHHcCcCCCHH--HHHHHHHHHHHhcC
Confidence 111111 111126899999999999999999865 46679999999996
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-45 Score=391.40 Aligned_cols=247 Identities=40% Similarity=0.699 Sum_probs=231.4
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.++++||+|++++++++++.|.+|+.+|++|.+.++ .||+|||||||||||||.||+|+|++.++.|+++..++++.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 45799999999999999999999999999999999886 56699999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
+|+|+....++.+|..|+.++||||||||||.+.++|.+. +.....++.+-+|+.+|||+.+ ..+|-||++||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEecCCcc
Confidence 9999999999999999999999999999999999988654 4555667888899999999976 47899999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.|||+++| |||+.|+||+|+.+.|.+||+.+.+++.+..++|++.||..++|+||+||+++|.+|.+.|+|+
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~------ 375 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE------ 375 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccC
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 803 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS 803 (836)
....+|++||.+|.+++...
T Consensus 376 --------------------~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 376 --------------------RRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred --------------------ccCeecHHHHHHHHHHHHhc
Confidence 23579999999999998553
No 9
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-45 Score=401.31 Aligned_cols=388 Identities=20% Similarity=0.257 Sum_probs=287.4
Q ss_pred HHHHHHHHHHHHhhccC-----CCCeEEEEcCchhhhc------cCcchhhHHHHHH-hcCCC-----cEEEEeeeccCC
Q 003253 272 DKLLINTLFEVVFSESR-----SCPFILFMKDAEKSIA------GNSDSYSTFKSRL-EKLPD-----KVIVIGSHTHTD 334 (836)
Q Consensus 272 ~~~~i~~l~~~~~~~~~-----~~p~Ilfi~ei~~~l~------~~~~~~~~l~~~l-~~l~g-----~v~vIgs~~~~d 334 (836)
.+.-|+.||.-|.+|-+ .+=-||.|||||.+-. |++..++.+.+.| .+.+| ||+|||+|||.|
T Consensus 301 SE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~D 380 (744)
T KOG0741|consen 301 SEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKD 380 (744)
T ss_pred cHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchh
Confidence 34556666666554432 3345999999999553 6688888888877 34444 999999999999
Q ss_pred CccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhhh
Q 003253 335 NRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSE 414 (836)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~~ 414 (836)
|+|.|++|||| |+.++||.|||+++|++||++|+.+|++
T Consensus 381 ----------------------lIDEALLRPGR-------------------lEVqmEIsLPDE~gRlQIl~IHT~rMre 419 (744)
T KOG0741|consen 381 ----------------------LIDEALLRPGR-------------------LEVQMEISLPDEKGRLQILKIHTKRMRE 419 (744)
T ss_pred ----------------------hHHHHhcCCCc-------------------eEEEEEEeCCCccCceEEEEhhhhhhhh
Confidence 99999999999 9999999999999999999999999999
Q ss_pred hhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCC--------CCCCCcccccccchhh
Q 003253 415 TLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNP--------EADPDARLVLSCESIQ 486 (836)
Q Consensus 415 ~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~--------d~~~~~~~~i~~~~~~ 486 (836)
+..+..|+ ||++|+....+|||++||.+|++|.++++.+.. ++....++.++.+||.
T Consensus 420 ~~~l~~dV---------------dl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl 484 (744)
T KOG0741|consen 420 NNKLSADV---------------DLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFL 484 (744)
T ss_pred cCCCCCCc---------------CHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHH
Confidence 99999988 566666667778888888888888877776543 2335567788888887
Q ss_pred hhhhHHHHHHHhhhhhhccccccCCHHHHHHHHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCC
Q 003253 487 YGIGIFQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLT 566 (836)
Q Consensus 487 ~~~~~~~~i~~~~~~~~~~~~~~v~~~d~~~~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~ 566 (836)
+++. +++|+.. ++++|+++.+..+++.+.... ..+.+.-..++. +.+.+ ..
T Consensus 485 ~aL~---dVkPAFG---------~see~l~~~~~~Gmi~~g~~v---------~~il~~G~llv~-qvk~s-------~~ 535 (744)
T KOG0741|consen 485 NALE---DVKPAFG---------ISEEDLERFVMNGMINWGPPV---------TRILDDGKLLVQ-QVKNS-------ER 535 (744)
T ss_pred HHHH---hcCcccC---------CCHHHHHHHHhCCceeecccH---------HHHHhhHHHHHH-Hhhcc-------cc
Confidence 7665 5555554 688999999989998876532 122222222222 22222 24
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc-cchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCC
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 645 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~-l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~ 645 (836)
.+..++||+||||+|||+||..+|..+++||+++-.++ +++........+++.+|+.|++++-+||++|+|++|+..
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~-- 613 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY-- 613 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--
Confidence 56689999999999999999999999999999976554 443333334567899999999999999999999999743
Q ss_pred CCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcH-HHHhhccccccCCCCCH-HHHHHHHHHHHhhCCCC
Q 003253 646 NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE-AVIRRLPRRLMVNLPDA-PNRAKILQVILAKEDLS 723 (836)
Q Consensus 646 ~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~-~l~rRf~~~I~v~~P~~-~eR~~Il~~~l~~~~l~ 723 (836)
.+....+.+.++|.|++.+...+++. ++++|++||++...|.+ ++..+|+..+++|..+. ++..+++... +..
T Consensus 614 vpIGPRfSN~vlQaL~VllK~~ppkg-~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~----n~f 688 (744)
T KOG0741|consen 614 VPIGPRFSNLVLQALLVLLKKQPPKG-RKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL----NIF 688 (744)
T ss_pred cccCchhhHHHHHHHHHHhccCCCCC-ceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc----cCC
Confidence 35667888999999999999987764 78999999998877766 67789999998876554 6666666543 333
Q ss_pred CcccHHHHHHHcC----CCcHHHHHHHHHHHH
Q 003253 724 PDVDFDAIANMTD----GYSGSDLKNLCVTAA 751 (836)
Q Consensus 724 ~d~dl~~LA~~t~----G~sg~DL~~L~~~A~ 751 (836)
.+.+...++.... +.-...|..++++|.
T Consensus 689 sd~~~~~~~~~~~~~~~~vgIKklL~lie~a~ 720 (744)
T KOG0741|consen 689 SDDEVRAIAEQLLSKKVNVGIKKLLMLIEMAR 720 (744)
T ss_pred CcchhHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 3334344333322 222345555555554
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-43 Score=397.89 Aligned_cols=399 Identities=27% Similarity=0.433 Sum_probs=304.7
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhc------cCcchhh-HH-------HHHHhcCCCcEEEEeeeccCCCccc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYS-TF-------KSRLEKLPDKVIVIGSHTHTDNRKE 338 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~------~~~~~~~-~l-------~~~l~~l~g~v~vIgs~~~~d~~~~ 338 (836)
++.++..|..+-. .+|.||++||+|.+++ +....+. .+ .....+.+..|.+|++-+....
T Consensus 480 Qk~l~~vfse~~~---~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qt--- 553 (952)
T KOG0735|consen 480 QKFLNNVFSEALW---YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQT--- 553 (952)
T ss_pred HHHHHHHHHHHHh---hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhh---
Confidence 7788888888888 9999999999999887 1112211 11 1111333446789998775542
Q ss_pred cCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhhhhhhc
Q 003253 339 KSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKM 418 (836)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~~~~~~ 418 (836)
+.+-+-.|+ +|..++.++.|+..+|.+||+....+ +.-.
T Consensus 554 -------------------l~~~L~s~~-------------------~Fq~~~~L~ap~~~~R~~IL~~~~s~---~~~~ 592 (952)
T KOG0735|consen 554 -------------------LNPLLVSPL-------------------LFQIVIALPAPAVTRRKEILTTIFSK---NLSD 592 (952)
T ss_pred -------------------cChhhcCcc-------------------ceEEEEecCCcchhHHHHHHHHHHHh---hhhh
Confidence 222122233 38889999999999999999944422 2211
Q ss_pred cCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccccccchhhhhhhHHHHHHHh
Q 003253 419 KGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNE 498 (836)
Q Consensus 419 ~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~i~~~~~~~~~~~~~~i~~~ 498 (836)
..+.+..-...+|.||.-.|| +-.|..|+.+++. +.+.++...+..++|...+..+...
T Consensus 593 ~~~~dLd~ls~~TEGy~~~DL---------------~ifVeRai~~a~l---eris~~~klltke~f~ksL~~F~P~--- 651 (952)
T KOG0735|consen 593 ITMDDLDFLSVKTEGYLATDL---------------VIFVERAIHEAFL---ERISNGPKLLTKELFEKSLKDFVPL--- 651 (952)
T ss_pred hhhHHHHHHHHhcCCccchhH---------------HHHHHHHHHHHHH---HHhccCcccchHHHHHHHHHhcChH---
Confidence 111122224555666665555 4556666655552 1121222255666555444322211
Q ss_pred hhhhhccccccCCHHHHHHHHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCC
Q 003253 499 SKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 578 (836)
Q Consensus 499 ~~~~~~~~~~~v~~~d~~~~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPp 578 (836)
. +.++---...++.|+|++|+.++++.|++.+++|.++|..|.+..+. -..||||||||
T Consensus 652 a--------------------LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr-~~~giLLyGpp 710 (952)
T KOG0735|consen 652 A--------------------LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLR-LRTGILLYGPP 710 (952)
T ss_pred H--------------------hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcc-cccceEEECCC
Confidence 0 11111112234789999999999999999999999999999987654 44799999999
Q ss_pred CChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHH
Q 003253 579 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN 658 (836)
Q Consensus 579 GtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~ 658 (836)
|||||+||.|+|...++.|+.+..+++.++|+|.+|.+++.+|..|+..+|||||+||+|++.++|+... .....++.+
T Consensus 711 GcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs-TGVTDRVVN 789 (952)
T KOG0735|consen 711 GCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS-TGVTDRVVN 789 (952)
T ss_pred CCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC-CCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986533 334578999
Q ss_pred HHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcC
Q 003253 659 EFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTD 736 (836)
Q Consensus 659 ~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~ 736 (836)
+++.++||... -..|.|+|+|++|+.+||+++| |+|+.++.++|+..+|.+|++.+........++|++.+|.+|+
T Consensus 790 QlLTelDG~Eg--l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~ 867 (952)
T KOG0735|consen 790 QLLTELDGAEG--LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTD 867 (952)
T ss_pred HHHHhhccccc--cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcC
Confidence 99999999864 3679999999999999999999 9999999999999999999999998888889999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 737 GYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 737 G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
||+|+||..|+-.|...++++++..+.
T Consensus 868 g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 868 GFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999876443
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-45 Score=406.86 Aligned_cols=299 Identities=33% Similarity=0.578 Sum_probs=262.5
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
...++|.||+|++....+|.+++.. +.+|+.|...++ .|++|||||||||||||+||+|+|.+++.||+.++++++++
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 3378999999999999999999987 999999998885 56799999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccC--cccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--TERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~--~~~vlVIaTTn~~~ 685 (836)
.+.|++|+.++.+|+.|+...|||+||||||.+.++|.+ ...+..+++..+|+..||++.... +.+|+|||+||+|+
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999998865 566777899999999999987653 37899999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.||++++| ||++.|.+..|+..+|.+||+.++++..+..++++..||.+|.||.|+||..||.+|+..|++|++....
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999987443
Q ss_pred H--HHHH---------HHhcC-------------------------CCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 003253 764 K--ERAA---------AMAEG-------------------------KPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 807 (836)
Q Consensus 764 ~--~~~~---------a~~~~-------------------------~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~ 807 (836)
. .... ...+. .+.+........-.|.++||++|+..++||..++
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 1 0000 00000 0000000112334588999999999999999999
Q ss_pred ccchhhHHHHHHHhcCCCCccc
Q 003253 808 SVNMSELLQWNELYGEGGSRRK 829 (836)
Q Consensus 808 ~~~~~~~~~W~~i~G~~~~r~~ 829 (836)
++...|.+.|+||||+..+|..
T Consensus 501 GF~tVPdVtW~dIGaL~~vR~e 522 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALEEVRLE 522 (802)
T ss_pred cceecCCCChhhcccHHHHHHH
Confidence 9999999999999999998865
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-42 Score=355.85 Aligned_cols=298 Identities=38% Similarity=0.661 Sum_probs=254.8
Q ss_pred CcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 522 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 522 ~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
..|-...+++.|+|+.|++..|+.|++.|.+|++.|.+|... .+|.++|||||||||||++||+|+|.+.+..|+.|+
T Consensus 121 sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 121 SAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 334456678999999999999999999999999999999743 689999999999999999999999999999999999
Q ss_pred ccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEecc
Q 003253 602 MSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 681 (836)
Q Consensus 602 ~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTT 681 (836)
.++++++|.|++|+.++++|++|+.+.|+||||||||.+++.+. .++.++.+++..+|+++|.|... +...++|+++|
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~-enEseasRRIKTEfLVQMqGVG~-d~~gvLVLgAT 276 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS-ENESEASRRIKTEFLVQMQGVGN-DNDGVLVLGAT 276 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC-CCchHHHHHHHHHHHHhhhcccc-CCCceEEEecC
Confidence 99999999999999999999999999999999999999998884 56778899999999999999865 45889999999
Q ss_pred CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 003253 682 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 760 (836)
Q Consensus 682 n~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~ 760 (836)
|-|+.||.+++|||.++|++|+|....|..+|+.++...... .+.|+.+|+++|+||||+||.-+++.|.+.++|++..
T Consensus 277 NiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 277 NIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred CCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 999999999999999999999999999999999998765433 6789999999999999999999999999999999765
Q ss_pred HHHHHHHHH-----HhcCCCCCCCCCC---------------CCCccccHHHHHHHHHHhccCccccccchhhHHHHHHH
Q 003253 761 KEKKERAAA-----MAEGKPAPALSGC---------------ADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNEL 820 (836)
Q Consensus 761 ~~~~~~~~a-----~~~~~~~~~~~~~---------------~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i 820 (836)
.....+--. .-.....|+..+. .--.+|||.||..++...+|++..++ +....+|++-
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~D--l~k~~~Ft~d 434 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDD--LLKHEKFTED 434 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHH--HHHHHHHHHh
Confidence 443311000 0000111111111 11257999999999999999999774 5568899999
Q ss_pred hcCCC
Q 003253 821 YGEGG 825 (836)
Q Consensus 821 ~G~~~ 825 (836)
+|.+|
T Consensus 435 FGqEg 439 (439)
T KOG0739|consen 435 FGQEG 439 (439)
T ss_pred hccCC
Confidence 99875
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=5.3e-37 Score=351.18 Aligned_cols=410 Identities=20% Similarity=0.347 Sum_probs=303.7
Q ss_pred HHHHHHHHhhccCCCCeEEEEcCchhhhccCcchhhHHHHH---HhcCCCcEEEEeeeccCCCccccCCCCCccccccCC
Q 003253 276 INTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSR---LEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGS 352 (836)
Q Consensus 276 i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~~~~~~l~~~---l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~ 352 (836)
+++|- .+......+|.|+.+.|+|.++ ++..+...|+.. +...+..|++++.....+.
T Consensus 68 ~~al~-~i~~~~~~~~~~~vl~d~h~~~-~~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~~p~----------------- 128 (489)
T CHL00195 68 LQALE-FIEKLTPETPALFLLKDFNRFL-NDISISRKLRNLSRILKTQPKTIIIIASELNIPK----------------- 128 (489)
T ss_pred HHHHH-HHHhcCCCCCcEEEEecchhhh-cchHHHHHHHHHHHHHHhCCCEEEEEcCCCCCCH-----------------
Confidence 34442 3333333458999999999987 334444444432 2334557777776543331
Q ss_pred chhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhhhhhhccCCchhHHHHhhcc
Q 003253 353 NQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRS 432 (836)
Q Consensus 353 ~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~ 432 (836)
.|.+.+ ..+++++|+.++..++++..... ...
T Consensus 129 -----------------------------el~~~~-~~~~~~lP~~~ei~~~l~~~~~~------------------~~~ 160 (489)
T CHL00195 129 -----------------------------ELKDLI-TVLEFPLPTESEIKKELTRLIKS------------------LNI 160 (489)
T ss_pred -----------------------------HHHhce-eEEeecCcCHHHHHHHHHHHHHh------------------cCC
Confidence 144445 58899999999999998633210 011
Q ss_pred CCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccccccchhhhhhhHHHHHHHhhhhhhccccccCCH
Q 003253 433 GLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKKSLKDVVTE 512 (836)
Q Consensus 433 g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~ 512 (836)
.++..+++.++..+..++-.+++.++..++..+ + .+..+++.. +..+.++. +..
T Consensus 161 ~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~----------~--~~~~~~~~~-------i~~~k~q~-------~~~ 214 (489)
T CHL00195 161 KIDSELLENLTRACQGLSLERIRRVLSKIIATY----------K--TIDENSIPL-------ILEEKKQI-------ISQ 214 (489)
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------C--CCChhhHHH-------HHHHHHHH-------Hhh
Confidence 356677888888889999999999887755431 0 011111111 11111100 001
Q ss_pred HHHHHHHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003253 513 NEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 513 ~d~~~~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
.+++.......+|++++|++.+|+++.+..... .......++ ++++++||+||||||||++|+++|++
T Consensus 215 --------~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 215 --------TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred --------hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 122333334678999999999999998765421 112223343 56699999999999999999999999
Q ss_pred hCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCc
Q 003253 593 AGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 672 (836)
Q Consensus 593 l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~ 672 (836)
++.+++.++++.+.++++|+++..++.+|..|+..+||||||||||.++..+..........+++.+++..++.. .
T Consensus 283 ~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~ 358 (489)
T CHL00195 283 WQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----K 358 (489)
T ss_pred hCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----C
Confidence 999999999999999999999999999999999999999999999999876544445566788888988887642 3
Q ss_pred ccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCC--CcccHHHHHHHcCCCcHHHHHHHHH
Q 003253 673 ERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS--PDVDFDAIANMTDGYSGSDLKNLCV 748 (836)
Q Consensus 673 ~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~--~d~dl~~LA~~t~G~sg~DL~~L~~ 748 (836)
.+++||||||.++.+|++++| ||+..++++.|+.++|.+||+.++.+.... .+.+++.||..|+||||+||.++|.
T Consensus 359 ~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 359 SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 679999999999999999998 999999999999999999999999886533 4788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHh
Q 003253 749 TAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELY 821 (836)
Q Consensus 749 ~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~ 821 (836)
+|+..++.+ .++++.+||..|++++.|+.....-....+.+|..-+
T Consensus 439 eA~~~A~~~---------------------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 439 EAMYIAFYE---------------------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHHc---------------------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 999877542 2569999999999999998765555566888998753
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-38 Score=344.71 Aligned_cols=271 Identities=38% Similarity=0.590 Sum_probs=238.1
Q ss_pred CCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeecc
Q 003253 524 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 603 (836)
Q Consensus 524 i~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s 603 (836)
.|....+++|+|+-|.++.|++|++.|.. ++.|+.|.+.+. +-|+||||+||||||||+||||+|.+.+.||+..+.+
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGG-KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGS 371 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGG-KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGS 371 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccC-cCCCceEEeCCCCCchhHHHHHhhcccCCCeEecccc
Confidence 33334478999999999999999999975 899999998764 4559999999999999999999999999999999999
Q ss_pred ccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC
Q 003253 604 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 683 (836)
Q Consensus 604 ~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~ 683 (836)
++-..++|.....++.+|..|++.+||||||||||.+.++|.+...+ ..++.+++++++|||+..+ ..|+||++||.
T Consensus 372 EFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qN--eGiIvigATNf 448 (752)
T KOG0734|consen 372 EFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQN--EGIIVIGATNF 448 (752)
T ss_pred chhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcC--CceEEEeccCC
Confidence 99999999999999999999999999999999999999998655544 8899999999999999764 68999999999
Q ss_pred CCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 003253 684 PFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEK 761 (836)
Q Consensus 684 ~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~ 761 (836)
|+.||+++.| |||++|.||.||..-|.+||..++.+..+..++|+..||+-|.||+|+||.+|++.|+..|...
T Consensus 449 pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d---- 524 (752)
T KOG0734|consen 449 PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD---- 524 (752)
T ss_pred hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc----
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999987653
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCC
Q 003253 762 EKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 825 (836)
Q Consensus 762 ~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~ 825 (836)
....|+|.|++.|.+++.-...++.....+.-+-.--|.++|
T Consensus 525 ----------------------ga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~G 566 (752)
T KOG0734|consen 525 ----------------------GAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGG 566 (752)
T ss_pred ----------------------CcccccHHHHhhhhhheeecccccccccChhhhhhhhhhccC
Confidence 224699999999999987666555444443333334455544
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-36 Score=304.89 Aligned_cols=245 Identities=33% Similarity=0.594 Sum_probs=225.8
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+..+++||+|++...++|.+.+.+|+.+++.|.+.++ +||+|+|+|||||||||.+|+|.|...+..|..+..+.++.
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45678999999999999999999999999999999885 56699999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
.|+|...+.++..|..|+..+|+||||||+|.+..+|.+. .......+.+-+++.+++|+.+. .++-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 9999999999999999999999999999999999888653 23345567778899999999765 6799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.|||+++| |+++.|+||.|+.+.|..|++.+.+++++.+|+++++||+.|++|+|++++.+|.+|.+.|.|+
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr------ 395 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRR------ 395 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhc------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999886
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 801 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~ 801 (836)
+...++.+||.+++.+|+
T Consensus 396 --------------------~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 396 --------------------GATEVTHEDFMEGILEVQ 413 (424)
T ss_pred --------------------ccccccHHHHHHHHHHHH
Confidence 234689999999998883
No 16
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-36 Score=334.81 Aligned_cols=280 Identities=46% Similarity=0.799 Sum_probs=253.3
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
...+.|+|+.|++.+++.+.+.+.+|+.++..|. +...|++++||.||||+|||+|++|||.++++.|..++++.+.+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~--glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFL--GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhh--ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 3468999999999999999999999999999997 44678899999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 687 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~L 687 (836)
+|.|++++.++.+|..|+..+|+||||||||.++.+| .+..++..+++..+++..+++.......+|+||||||.|+.+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 9999999999999999999999999999999999999 677888889999999999999998888899999999999999
Q ss_pred cHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 688 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 766 (836)
Q Consensus 688 d~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~ 766 (836)
|++++|||..++++++|+.+.|..+|..++.+.+.. .+.+++.|++.|+||+++||.++|..|++..++.+......
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~-- 381 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDL-- 381 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhh--
Confidence 999999999999999999999999999999887433 67889999999999999999999999999998875432000
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCC
Q 003253 767 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 825 (836)
Q Consensus 767 ~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~ 825 (836)
........++++..||+.|++.+.|+++.+.. .-+.+|+..+|...
T Consensus 382 -----------~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l--~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 382 -----------EFIDADKIRPITYPDFKNAFKNIKPSVSLEGL--EKYEKWDKEFGSSE 427 (428)
T ss_pred -----------hhcchhccCCCCcchHHHHHHhhccccCcccc--chhHHHhhhhcccc
Confidence 00123466899999999999999999998864 45889999999865
No 17
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-36 Score=324.58 Aligned_cols=232 Identities=19% Similarity=0.305 Sum_probs=204.7
Q ss_pred HHHHHHHcccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHH
Q 003253 7 VFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKA 86 (836)
Q Consensus 7 ~~~~~~~~~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~ka 86 (836)
-|+.-+...||.|++|+|+|++++.. |.+|+.|.+.+.++|++|++++++ +|...+++|||+||||| .++|||||
T Consensus 72 e~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~~g-~Ll~p~kGiLL~GPpG~--GKTmlAKA 146 (386)
T KOG0737|consen 72 EYEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFAKG-KLLRPPKGILLYGPPGT--GKTMLAKA 146 (386)
T ss_pred HHHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhccc-ccccCCccceecCCCCc--hHHHHHHH
Confidence 36778889999999999999999999 999999999999999999998754 68889999999999999 99999999
Q ss_pred HHhHhCCeEEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003253 87 LAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPK 166 (836)
Q Consensus 87 la~~~~~~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (836)
+|++.||+++.|+.+.+.+
T Consensus 147 ~Akeaga~fInv~~s~lt~------------------------------------------------------------- 165 (386)
T KOG0737|consen 147 IAKEAGANFINVSVSNLTS------------------------------------------------------------- 165 (386)
T ss_pred HHHHcCCCcceeeccccch-------------------------------------------------------------
Confidence 9999999999999877666
Q ss_pred ccccccccccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCC
Q 003253 167 METDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGG 246 (836)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~ 246 (836)
||+|+
T Consensus 166 ------------------------KWfgE--------------------------------------------------- 170 (386)
T KOG0737|consen 166 ------------------------KWFGE--------------------------------------------------- 170 (386)
T ss_pred ------------------------hhHHH---------------------------------------------------
Confidence 77776
Q ss_pred CCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC------------cchhhHHH
Q 003253 247 QCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN------------SDSYSTFK 314 (836)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~------------~~~~~~l~ 314 (836)
+++++.++|.++.+ .+|+||||||||++++.+ .||+..|.
T Consensus 171 -------------------------~eKlv~AvFslAsK---l~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD 222 (386)
T KOG0737|consen 171 -------------------------AQKLVKAVFSLASK---LQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD 222 (386)
T ss_pred -------------------------HHHHHHHHHhhhhh---cCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhc
Confidence 79999999999998 999999999999999732 33333333
Q ss_pred HHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEec
Q 003253 315 SRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIH 394 (836)
Q Consensus 315 ~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~ 394 (836)
....+-+.+|+|+||||+|- ++|+||.||||.++.|+
T Consensus 223 Gl~s~~~~rVlVlgATNRP~-------------------------------------------DlDeAiiRR~p~rf~V~ 259 (386)
T KOG0737|consen 223 GLSSKDSERVLVLGATNRPF-------------------------------------------DLDEAIIRRLPRRFHVG 259 (386)
T ss_pred cccCCCCceEEEEeCCCCCc-------------------------------------------cHHHHHHHhCcceeeeC
Confidence 33333234799999999994 78999999999999999
Q ss_pred CCChHHHHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHH
Q 003253 395 MPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESA 454 (836)
Q Consensus 395 lP~~e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~i 454 (836)
+|+.++|.+||+..| ++.++.++++..+.+-.|+||+|+||+++|+.++.++..++
T Consensus 260 lP~~~qR~kILkviL----k~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 260 LPDAEQRRKILKVIL----KKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIREL 315 (386)
T ss_pred CCchhhHHHHHHHHh----cccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHH
Confidence 999999999999988 67778899999999999999999999999999999776644
No 18
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=298.47 Aligned_cols=245 Identities=36% Similarity=0.627 Sum_probs=226.8
Q ss_pred CCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc
Q 003253 527 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 606 (836)
Q Consensus 527 ~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~ 606 (836)
..+.+++.|++|++-.|+++++.+..|+...++|.+.++. ||+|+|+|||||||||+||+|+|+...+.|+++..++++
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 4568999999999999999999999999999999998864 669999999999999999999999999999999999999
Q ss_pred hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCC--CchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 607 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 607 s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~--~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
.+|.|+....++.+|..|+.+.|+||||||||.+..+|.+ .+......+++-+++.+|||+... .++-||++||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecCcc
Confidence 9999999999999999999999999999999999988865 344556788999999999999654 689999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 685 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 762 (836)
Q Consensus 685 ~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~ 762 (836)
+.|||+++| |+++.|+||+|+..+++-+|..+..++++.+++|++.+..+-+..|++||..+|++|.+.|+|+
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~----- 379 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRE----- 379 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHh-----
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 003253 763 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 800 (836)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v 800 (836)
..-.+...||++|.+.+
T Consensus 380 ---------------------nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 380 ---------------------NRYVVLQKDFEKAYKTV 396 (408)
T ss_pred ---------------------cceeeeHHHHHHHHHhh
Confidence 12357889999998865
No 19
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-34 Score=291.73 Aligned_cols=249 Identities=35% Similarity=0.598 Sum_probs=227.2
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
++.+++-++|++...+++++.+..|.+.|++|...++..| +|+|||||||||||.||+|+|+...+.|++++.++++.+
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 4678889999999999999999999999999999887766 899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCC--CchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 686 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~--~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~ 686 (836)
|+|+....++.+|-+|+.++|+|||+||||++...|.. .+......+.+-+++.++||+... .++-||++||+.+-
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridi 298 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDI 298 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEecccccc
Confidence 99999999999999999999999999999999876632 233445567778899999999654 67999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 687 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 764 (836)
Q Consensus 687 Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~ 764 (836)
||++++| |+++.|+||+|+.+.|.+|++.+-+++++...+++..+|....|.||++++.+|.+|.+.|.|+-
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------ 372 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------ 372 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh------
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999861
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccc
Q 003253 765 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSS 806 (836)
Q Consensus 765 ~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~ 806 (836)
...+|.+||+-|..++..--+.
T Consensus 373 --------------------rvhvtqedfemav~kvm~k~~e 394 (404)
T KOG0728|consen 373 --------------------RVHVTQEDFEMAVAKVMQKDSE 394 (404)
T ss_pred --------------------hccccHHHHHHHHHHHHhcccc
Confidence 1469999999999998655443
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=336.70 Aligned_cols=256 Identities=41% Similarity=0.685 Sum_probs=231.4
Q ss_pred CCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc
Q 003253 526 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 605 (836)
Q Consensus 526 ~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l 605 (836)
..+.+++|.|+.|.+++|++|.|+|.. |++|+.|.+.+ .+.|+|+||+||||||||.||+|+|.+.+.||+.++.+++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEF 380 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEF 380 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHH
Confidence 345579999999999999999999985 99999999988 4667999999999999999999999999999999999999
Q ss_pred chhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCC---CCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccC
Q 003253 606 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 682 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~---~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn 682 (836)
+..+.|.....++.+|..|+.+.||||||||||.+...+. ..+.+......++++++++||.... ..|+|+|+||
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tn 458 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATN 458 (774)
T ss_pred HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccC
Confidence 9999999999999999999999999999999999998884 3345556678899999999999754 6799999999
Q ss_pred CCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Q 003253 683 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEIL 759 (836)
Q Consensus 683 ~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~ 759 (836)
+++.||++++| |||+.|+++.|+...|.+|++.++++..+. ++.++..+|.+|.||+|+||.++|++|+..++|+
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~-- 536 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARK-- 536 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHh--
Confidence 99999999999 999999999999999999999999998885 7888999999999999999999999999999886
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccch
Q 003253 760 EKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNM 811 (836)
Q Consensus 760 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~ 811 (836)
....|+..||+.|++++...........
T Consensus 537 ------------------------~~~~i~~~~~~~a~~Rvi~G~~~~~~~~ 564 (774)
T KOG0731|consen 537 ------------------------GLREIGTKDLEYAIERVIAGMEKKSRVL 564 (774)
T ss_pred ------------------------ccCccchhhHHHHHHHHhccccccchhc
Confidence 3356999999999998888765544433
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=294.55 Aligned_cols=243 Identities=31% Similarity=0.511 Sum_probs=212.8
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 609 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~ 609 (836)
+++|+|++|++..|+..+-.+. .+..|+.|..+ .|++||||||||||||++|+|+|++.+.|++.+.+.++.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~W----APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDW----APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhccc----CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5789999999999988765444 58899988754 358999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcH
Q 003253 610 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 689 (836)
Q Consensus 610 ~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~ 689 (836)
+|.....++.+|+.|++.+|||+||||+|.+.-.|.-.........+.+.|++.+||+. .+..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999997555433333344578899999999996 4578999999999999999
Q ss_pred HHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 003253 690 AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKN-LCVTAAHRPIKEILEKEKKERAA 768 (836)
Q Consensus 690 ~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~-L~~~A~~~air~~~~~~~~~~~~ 768 (836)
++++||...|+|.+|+.++|.+|++.++++.++.-+.++..++..+.|+||+||.. ++..|.++|+.+
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e----------- 338 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE----------- 338 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh-----------
Confidence 99999999999999999999999999999999998999999999999999999975 556777777664
Q ss_pred HHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcc
Q 003253 769 AMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 805 (836)
Q Consensus 769 a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~ 805 (836)
+...|+.+|++.|+++-++...
T Consensus 339 ---------------d~e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 339 ---------------DREKVEREDIEKALKKERKRRA 360 (368)
T ss_pred ---------------chhhhhHHHHHHHHHhhccccC
Confidence 1235899999999998766554
No 22
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-35 Score=302.69 Aligned_cols=244 Identities=37% Similarity=0.637 Sum_probs=225.2
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
+.-++.||+|++...+++++.+.+|+.+|+.|...++ +||++|+|||+||||||.||+|+|+...+.|+++-.++++.+
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGi-kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC-CCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 4578999999999999999999999999999999885 677999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 686 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~ 686 (836)
|.|+..+.++++|..|..++|+|+||||||.+..+|++. +......+.+-+++++++|+.. +..|-||++||+.+.
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds--rgDvKvimATnrie~ 336 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS--RGDVKVIMATNRIET 336 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc--cCCeEEEEecccccc
Confidence 999999999999999999999999999999999988653 3444556667789999999975 478999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 687 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 764 (836)
Q Consensus 687 Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~ 764 (836)
|||+++| |+++.|.|+.|+...+..||+.+..++.+..+++++.+...-+.+||+||+++|.+|.+.|.|+.
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------ 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------ 410 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH------
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999998872
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 003253 765 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 801 (836)
Q Consensus 765 ~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~ 801 (836)
...++++||..|.+.|.
T Consensus 411 --------------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 --------------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred --------------------HhhccHHHHHHHHHHHH
Confidence 13589999999999874
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.6e-34 Score=318.91 Aligned_cols=247 Identities=37% Similarity=0.622 Sum_probs=222.1
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.++|+||+|++.+++++++.+.+|+.+++.|...++ .|++++||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45789999999999999999999999999999998775 46699999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
+|.|+.+..++.+|..|+...|+||||||||.++..+.+. +......+++.+++..+++.... .+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998776432 22334567788888889887543 5789999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.+|++++| ||+..|+|+.|+.++|..||+.++.+.++..++++..+|..++||+|+||.++|++|++.|+++
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~------ 369 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK------ 369 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999988888999999999999999999999999999998875
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccC
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 803 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS 803 (836)
....|+++||.+|++++...
T Consensus 370 --------------------~~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 370 --------------------NRYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred --------------------CCCccCHHHHHHHHHHHHhc
Confidence 12469999999999998543
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-34 Score=288.23 Aligned_cols=249 Identities=33% Similarity=0.587 Sum_probs=227.3
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.+++.|++|..+..+.|++.+..|+..|+.|.+.++. ||++||+|||||||||.+|+|+|+..++.|+++-.++++.
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 457899999999999999999999999999999998864 5699999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
+|+|+....++.+|++|+....||||+||||.+.+.|.+. +......+.+.+++.+++|+.+. .++-|+++||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCC
Confidence 9999999999999999999999999999999999988765 34455667778899999999754 7899999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.|||+++| |+++.++|.+|+.+.|..||+.+.+.+....++-++.||+++..-+|++|+.+|.+|.+.|++.-
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar----- 402 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR----- 402 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH-----
Confidence 99999999 99999999999999999999999999988899999999999999999999999999999998851
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcc
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 805 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~ 805 (836)
....|..||..|++++...+.
T Consensus 403 ---------------------rk~atekdfl~av~kvvkgy~ 423 (435)
T KOG0729|consen 403 ---------------------RKVATEKDFLDAVNKVVKGYA 423 (435)
T ss_pred ---------------------hhhhhHHHHHHHHHHHHHHHH
Confidence 134688999999999865543
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=7.3e-33 Score=312.05 Aligned_cols=251 Identities=40% Similarity=0.691 Sum_probs=223.2
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.++|+|++|++++++.+++.+..|+.+++.|...+. .+++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34689999999999999999999999999999988775 45589999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCc--hHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~--~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
.|.|+.+..++.+|..|+...|+||||||||.+++.+.... ......+.+.+++..+++... ..++.||+|||.++
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~ 281 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRID 281 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChh
Confidence 99999999999999999999999999999999987664322 123345566677777877643 35799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.++++++| ||+..|.|++|+.++|.+||+.++.+..+..+.++..+|..|+||+|+||..+|.+|++.|+++
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~------ 355 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRD------ 355 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999888888899999999999999999999999999998875
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 807 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~ 807 (836)
....|+++||.+|+++++++...+
T Consensus 356 --------------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 356 --------------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred --------------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 124699999999999999987766
No 26
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-34 Score=301.38 Aligned_cols=215 Identities=19% Similarity=0.297 Sum_probs=183.0
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+.-+|||++++++ |..+.-|.|++-.||+||+++. .-=-..+++||||||||| ++++||||.||+.+|.||=+=
T Consensus 144 e~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PElF~--~~GI~PPKGVLLYGPPGT--GKTLLAkAVA~~T~AtFIrvv 217 (406)
T COG1222 144 EKPDVTYEDIGGL--DEQIQEIREVVELPLKNPELFE--ELGIDPPKGVLLYGPPGT--GKTLLAKAVANQTDATFIRVV 217 (406)
T ss_pred cCCCCChhhccCH--HHHHHHHHHHhcccccCHHHHH--HcCCCCCCceEeeCCCCC--cHHHHHHHHHhccCceEEEec
Confidence 4568999999999 9999999999999999999953 211345899999999999 999999999999999999775
Q ss_pred ccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 003253 100 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 179 (836)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (836)
.|. |.+
T Consensus 218 gSE----------------------------------lVq---------------------------------------- 223 (406)
T COG1222 218 GSE----------------------------------LVQ---------------------------------------- 223 (406)
T ss_pred cHH----------------------------------HHH----------------------------------------
Confidence 422 332
Q ss_pred cccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccc
Q 003253 180 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 259 (836)
Q Consensus 180 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (836)
||+|+
T Consensus 224 -----------KYiGE---------------------------------------------------------------- 228 (406)
T COG1222 224 -----------KYIGE---------------------------------------------------------------- 228 (406)
T ss_pred -----------HHhcc----------------------------------------------------------------
Confidence 89998
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc----cCcchhhHHH-------HHHhcC--CCcEEE
Q 003253 260 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFK-------SRLEKL--PDKVIV 326 (836)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~----~~~~~~~~l~-------~~l~~l--~g~v~v 326 (836)
.-++++.||++|.. +.|+||||||||.+-+ .++.....++ ++|+.. .|+|-|
T Consensus 229 ------------GaRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKV 293 (406)
T COG1222 229 ------------GARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKV 293 (406)
T ss_pred ------------chHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 57899999999999 9999999999999665 1222223333 333333 359999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHH
Q 003253 327 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 406 (836)
Q Consensus 327 Igs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk 406 (836)
|+|||++| +||||++|||| |..+|+|++|+.++|.+||+
T Consensus 294 I~ATNR~D----------------------~LDPALLRPGR-------------------~DRkIEfplPd~~gR~~Il~ 332 (406)
T COG1222 294 IMATNRPD----------------------ILDPALLRPGR-------------------FDRKIEFPLPDEEGRAEILK 332 (406)
T ss_pred EEecCCcc----------------------ccChhhcCCCc-------------------ccceeecCCCCHHHHHHHHH
Confidence 99999999 89999999999 99999999999999999999
Q ss_pred HhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhcccc
Q 003253 407 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 449 (836)
Q Consensus 407 ~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~ 449 (836)
+|. .++.+.+++++...+..+.|++|+||+.+|++|-+|
T Consensus 333 IHt----rkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 333 IHT----RKMNLADDVDLELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred HHh----hhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHH
Confidence 999 556689999999999999999999999999999884
No 27
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-34 Score=320.10 Aligned_cols=264 Identities=37% Similarity=0.610 Sum_probs=246.4
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 609 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~ 609 (836)
.++ .+++|.......+++.+..|+..+..+...+. +|++++|+|||||+|||.+++++|++.++.++.++++++++++
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~-~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGI-KPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCC-CCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 355 78999999999999999999999999988774 5669999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcC-CceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc
Q 003253 610 FGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 688 (836)
Q Consensus 610 ~g~~e~~i~~lf~~A~~~~-psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld 688 (836)
.|+++.+++..|+.|.+++ |++|||||+|.+++++..... ...++..+++.++++... ..+++||++||+|+.|+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998865444 568899999999999863 47899999999999999
Q ss_pred HHHHh-hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 689 EAVIR-RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERA 767 (836)
Q Consensus 689 ~~l~r-Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~ 767 (836)
++++| ||++.+.+..|+..+|.+|++.++.+++...+.++..+|..+.||.|+||..+|.+|+..++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99999 9999999999999999999999999999888899999999999999999999999999988774
Q ss_pred HHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCCCcccc
Q 003253 768 AAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRRKK 830 (836)
Q Consensus 768 ~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~~r~~~ 830 (836)
+++||..|+..++||..++.....|.+.|+||||++..|.+-
T Consensus 405 ---------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 405 ---------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred ---------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 789999999999999999999888999999999999988753
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=4.2e-32 Score=315.66 Aligned_cols=271 Identities=40% Similarity=0.596 Sum_probs=235.6
Q ss_pred CCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc
Q 003253 525 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 604 (836)
Q Consensus 525 ~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~ 604 (836)
....+.++|+|++|++.+++++++.+.. +.+++.|...+. .+++++||+||||||||++|+++|.+++.+|+.+++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 3445679999999999999999998875 788888877653 55689999999999999999999999999999999999
Q ss_pred cchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccC
Q 003253 605 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 682 (836)
Q Consensus 605 l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn 682 (836)
+.+.+.|..+..++.+|..|+...|+||||||||.++..+... .......+++++++..++++.. ..+++||+|||
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn 201 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATN 201 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecC
Confidence 9999999999999999999999999999999999998766432 2234456788899999998754 35699999999
Q ss_pred CCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 003253 683 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 760 (836)
Q Consensus 683 ~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~ 760 (836)
.++.+|++++| ||+..++++.|+.++|.+||+.++....+..+.++..+|..+.||+++||.++|++|+..++++
T Consensus 202 ~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~--- 278 (495)
T TIGR01241 202 RPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK--- 278 (495)
T ss_pred ChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---
Confidence 99999999998 9999999999999999999999998887777889999999999999999999999998876653
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCC
Q 003253 761 KEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 825 (836)
Q Consensus 761 ~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~ 825 (836)
...+++.+||+.|++++..........+.+..+|...|.+.|
T Consensus 279 -----------------------~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaG 320 (495)
T TIGR01241 279 -----------------------NKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAG 320 (495)
T ss_pred -----------------------CCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh
Confidence 224699999999999998776666666778888888887766
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=315.55 Aligned_cols=255 Identities=40% Similarity=0.611 Sum_probs=232.6
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
...++|.|+.|.++.++++.+.|.. ++.|..|...+. +-|+|+||+||||||||.||+|+|.+.+.||+.++.++++.
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4578999999999999999999875 889999988775 66699999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCC--CchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~--~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
.++|-....++.+|..|++++||||||||||.+...|.. .+.+....+.++++++++||.. .+..|+||++||+|+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--~~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--GNEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--CCCceEEEecCCCcc
Confidence 999999999999999999999999999999999877742 3455666789999999999997 347899999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.+|++++| ||++.|.++.|+...|.+|++.++++..+.+++++..+|+.|.||+|+||.+++++|+..+.|+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~------ 373 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARR------ 373 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHh------
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999886
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchh
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMS 812 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~ 812 (836)
....+++.||.+|++++..........+.
T Consensus 374 --------------------n~~~i~~~~i~ea~drv~~G~erks~vis 402 (596)
T COG0465 374 --------------------NKKEITMRDIEEAIDRVIAGPERKSRVIS 402 (596)
T ss_pred --------------------cCeeEeccchHHHHHHHhcCcCcCCcccC
Confidence 33579999999999999888776665444
No 30
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-31 Score=312.80 Aligned_cols=361 Identities=20% Similarity=0.252 Sum_probs=248.2
Q ss_pred CCCeEEEEcCchhhhc-----c-CcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccC
Q 003253 289 SCPFILFMKDAEKSIA-----G-NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAF 362 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~-----~-~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~ 362 (836)
..|+||||||||++++ | ..++.|.||++|.+ |.+-+|||||..+|+
T Consensus 261 ~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~IGATT~~EYR-------------------------- 312 (786)
T COG0542 261 SKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTLDEYR-------------------------- 312 (786)
T ss_pred CCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEEEeccHHHHH--------------------------
Confidence 6699999999999998 2 38899999999955 999999999999863
Q ss_pred CCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHH--HhhHhhhhhhhccCCchhHHHHhhccCCCcCchh
Q 003253 363 PDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK--HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLE 440 (836)
Q Consensus 363 ~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk--~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~ 440 (836)
++++.|.||.||| ++|.+.+|+.++...||+ +..++.+|++.+.++....+..|+..++.++.|+
T Consensus 313 ------------k~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LP 379 (786)
T COG0542 313 ------------KYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLP 379 (786)
T ss_pred ------------HHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCC
Confidence 3456799999999 999999999999999999 7778889999999888888888888888877777
Q ss_pred hhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccc------------cccchhhhhhhHHHHHHHhh----hhhhc
Q 003253 441 TLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLV------------LSCESIQYGIGIFQAIQNES----KSLKK 504 (836)
Q Consensus 441 ~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~------------i~~~~~~~~~~~~~~i~~~~----~~~~~ 504 (836)
+.+++-..-.+ ....+... .|.....+- +..+.-.........+.... .....
T Consensus 380 DKAIDLiDeA~----------a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~ 448 (786)
T COG0542 380 DKAIDLLDEAG----------ARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEK 448 (786)
T ss_pred chHHHHHHHHH----------HHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHH
Confidence 66554433211 11111111 111100000 00000000000000000000 00000
Q ss_pred cccccCCHHHHHHHHhcCcCCCCCCcccchh--------------hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCc
Q 003253 505 SLKDVVTENEFEKRLLADVIPPSDIGVTFDD--------------IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK 570 (836)
Q Consensus 505 ~~~~~v~~~d~~~~l~~~ii~~~~~~~~~~d--------------i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~ 570 (836)
.....++.+++.. +++.+..++.....-++ ++|+++....+-..|... +. .-...++|..
T Consensus 449 ~~~~~v~~~~Ia~-vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra--Ra---GL~dp~rPig 522 (786)
T COG0542 449 ELEAEVDEDDIAE-VVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA--RA---GLGDPNRPIG 522 (786)
T ss_pred HHhhccCHHHHHH-HHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH--hc---CCCCCCCCce
Confidence 0000145555554 45555555443333333 455555555555554320 00 0023467888
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CCcceeecccc-----chhcccccHHHH-----HHHHHHHHhcCCceEEEccc
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI-----TSKWFGEGEKYV-----KAVFSLASKIAPSVIFVDEV 637 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~---~~~i~v~~s~l-----~s~~~g~~e~~i-----~~lf~~A~~~~psIL~IDEI 637 (836)
++||.||+|+|||.||++||..+. -.+++++|+++ +++.+|.+.+|+ ..+.+..++.++|||++|||
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEI 602 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEI 602 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechh
Confidence 899999999999999999999995 88999999998 556788888887 45777778888999999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCc-------ccEEEEeccCCC--------------------------
Q 003253 638 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT-------ERILVLAATNRP-------------------------- 684 (836)
Q Consensus 638 D~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~-------~~vlVIaTTn~~-------------------------- 684 (836)
+ .++..+++-|++.+|.....+. .+.+||+|||--
T Consensus 603 E------------KAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~ 670 (786)
T COG0542 603 E------------KAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEE 670 (786)
T ss_pred h------------hcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHH
Confidence 9 4457888999998887655443 568999999862
Q ss_pred --CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 003253 685 --FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 719 (836)
Q Consensus 685 --~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~ 719 (836)
..+.|+|++|++.+|.|.+.+.+...+|+...+..
T Consensus 671 l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 671 LKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred HHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 12458899999999999999999999999887754
No 31
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.4e-31 Score=321.92 Aligned_cols=380 Identities=19% Similarity=0.245 Sum_probs=233.8
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc------cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCc
Q 003253 272 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGL 345 (836)
Q Consensus 272 ~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~------~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~ 345 (836)
.+..+..+++.+.+ ..|+||||||||.+++ +..+..+.|++.|++ |.|.|||+||..++
T Consensus 259 ~e~~l~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~---------- 323 (731)
T TIGR02639 259 FEERLKAVVSEIEK---EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEY---------- 323 (731)
T ss_pred HHHHHHHHHHHHhc---cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHH----------
Confidence 46677778877776 6799999999999875 235678999999964 99999999998763
Q ss_pred cccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh--hhhhhhccCCch
Q 003253 346 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR--DSETLKMKGNLN 423 (836)
Q Consensus 346 ~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e--~~~~~~~~~n~~ 423 (836)
+++.+.|.++.||| +.|+|.+|+.+++.+||+..... .++.+.+.++..
T Consensus 324 ----------------------------~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al 374 (731)
T TIGR02639 324 ----------------------------KNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEAL 374 (731)
T ss_pred ----------------------------HHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHH
Confidence 22346799999999 69999999999999999965533 122222222222
Q ss_pred hHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccccccchhhhhhhHHHHHHHhhhhhh
Q 003253 424 HLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLK 503 (836)
Q Consensus 424 ~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~ 503 (836)
.....+...++. +..+++.+|+.+ ..|.++.-++ +....+..
T Consensus 375 ~~~~~ls~ryi~----------~r~~P~kai~ll-d~a~a~~~~~---~~~~~~~~------------------------ 416 (731)
T TIGR02639 375 EAAVELSARYIN----------DRFLPDKAIDVI-DEAGASFRLR---PKAKKKAN------------------------ 416 (731)
T ss_pred HHHHHhhhcccc----------cccCCHHHHHHH-HHhhhhhhcC---cccccccc------------------------
Confidence 211222222222 222333333322 1111111111 00001122
Q ss_pred ccccccCCHHHHHHHHhcCcCCCCCCcccch--------------hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCC
Q 003253 504 KSLKDVVTENEFEKRLLADVIPPSDIGVTFD--------------DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPC 569 (836)
Q Consensus 504 ~~~~~~v~~~d~~~~l~~~ii~~~~~~~~~~--------------di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~ 569 (836)
++.+++... +..+...+...++++ .++|++.+.+.+.+.+..... .-....+|.
T Consensus 417 ------v~~~~i~~~-i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~-----g~~~~~~p~ 484 (731)
T TIGR02639 417 ------VSVKDIENV-VAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRA-----GLGNPNKPV 484 (731)
T ss_pred ------cCHHHHHHH-HHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhc-----CCCCCCCCc
Confidence 333333331 122222222222222 255666666666655542100 001123565
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch-----hcccccHHHH-----HHHHHHHHhcCCceEEEccchh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDS 639 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s-----~~~g~~e~~i-----~~lf~~A~~~~psIL~IDEID~ 639 (836)
.++||+||||||||++|+++|..++.+++.++|+++.. .++|...+++ ..+....++.+.+||+|||||.
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEiek 564 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEK 564 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhh
Confidence 67999999999999999999999999999999988643 3444443332 3455666777889999999997
Q ss_pred hhcCCCCCchHHHHHHHHHHHHHHhcCCccc-------CcccEEEEeccCCCC-------------------------CC
Q 003253 640 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF-------------------------DL 687 (836)
Q Consensus 640 L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~-------~~~~vlVIaTTn~~~-------------------------~L 687 (836)
+ . ..+.+.|+..++..... +-.++++|+|||... .+
T Consensus 565 a-----~-------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f 632 (731)
T TIGR02639 565 A-----H-------PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLF 632 (731)
T ss_pred c-----C-------HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhc
Confidence 7 2 23445555555543221 225688999998631 25
Q ss_pred cHHHHhhccccccCCCCCHHHHHHHHHHHHhhC-------CCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHH
Q 003253 688 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPI 755 (836)
Q Consensus 688 d~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~-------~l~---~d~dl~~LA~~--t~G~sg~DL~~L~~~A~~~ai 755 (836)
.|+++.|++.++.|.+.+.++..+|++..+.+. ++. ++...+.|+.. ...|..+.|+.+++.....++
T Consensus 633 ~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l 712 (731)
T TIGR02639 633 SPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPL 712 (731)
T ss_pred ChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHH
Confidence 788999999999999999999999999987631 111 23335556654 234556667766666665554
Q ss_pred HH
Q 003253 756 KE 757 (836)
Q Consensus 756 r~ 757 (836)
.+
T Consensus 713 ~~ 714 (731)
T TIGR02639 713 SD 714 (731)
T ss_pred HH
Confidence 43
No 32
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.9e-32 Score=305.47 Aligned_cols=246 Identities=36% Similarity=0.620 Sum_probs=219.4
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
+.++|+||+|++..++++++.+..|+.+++.|...++ .++.++||+||||||||++|+++|++++.+|+.+..+++.+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi-~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGI-KPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 4589999999999999999999999999999988775 456899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 686 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~ 686 (836)
|.|+.+..++.+|..|....|+||||||||.++.++... +......+.+.+++..++++.. ..++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecCChHH
Confidence 999999999999999999999999999999998776432 2233445666778888888753 357899999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 687 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 764 (836)
Q Consensus 687 Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~ 764 (836)
++++++| ||++.|+|+.|+.++|.+||+.++.+..+..++++..++..++||+++||.++|.+|+..|+++
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~------- 407 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRE------- 407 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999997 9999999999999999999999999888888999999999999999999999999999998875
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccC
Q 003253 765 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 803 (836)
Q Consensus 765 ~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS 803 (836)
....|+.+||..|++++...
T Consensus 408 -------------------~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 408 -------------------RRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred -------------------cCCccCHHHHHHHHHHHHhh
Confidence 12469999999999998443
No 33
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.98 E-value=1.4e-30 Score=311.66 Aligned_cols=392 Identities=17% Similarity=0.222 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc------cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCc
Q 003253 272 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGL 345 (836)
Q Consensus 272 ~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~------~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~ 345 (836)
....++.+++.+.. .+|.||||||||.+++ ++.++.+.|++.|.+ |.|.|||+||..+++
T Consensus 263 ~e~rl~~l~~~l~~---~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~--------- 328 (758)
T PRK11034 263 FEKRFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFS--------- 328 (758)
T ss_pred HHHHHHHHHHHHHh---cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHH---------
Confidence 45567777777776 7899999999999875 346788889999965 899999999988642
Q ss_pred cccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh--hhhhhhccCCch
Q 003253 346 LFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR--DSETLKMKGNLN 423 (836)
Q Consensus 346 ~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e--~~~~~~~~~n~~ 423 (836)
++.+.|.+|.||| ++|+|.+|+.+++.+||+....+ .++++.+.+...
T Consensus 329 -----------------------------~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al 378 (758)
T PRK11034 329 -----------------------------NIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAV 378 (758)
T ss_pred -----------------------------HHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHH
Confidence 1235688999999 69999999999999999965433 333333333333
Q ss_pred hHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccccccchhhhhhhHHHHHHHhhhhhh
Q 003253 424 HLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLK 503 (836)
Q Consensus 424 ~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~ 503 (836)
.....|...++++.- +++.+|+.+=..+....+. +....+..+...++...+..+..+ |..
T Consensus 379 ~~a~~ls~ryi~~r~----------lPdKaidlldea~a~~~~~----~~~~~~~~v~~~~i~~v~~~~tgi-p~~---- 439 (758)
T PRK11034 379 RAAVELAVKYINDRH----------LPDKAIDVIDEAGARARLM----PVSKRKKTVNVADIESVVARIARI-PEK---- 439 (758)
T ss_pred HHHHHHhhccccCcc----------ChHHHHHHHHHHHHhhccC----cccccccccChhhHHHHHHHHhCC-Chh----
Confidence 223333444444444 4444444443222222221 111111223333333333222111 100
Q ss_pred ccccccCCHHHHHH--HHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCCh
Q 003253 504 KSLKDVVTENEFEK--RLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTG 581 (836)
Q Consensus 504 ~~~~~~v~~~d~~~--~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtG 581 (836)
.+..++.+. .+... + -..++|++.+.+.+.+.+...... -....+|..++||+||||||
T Consensus 440 -----~~~~~~~~~l~~l~~~-L--------~~~ViGQ~~ai~~l~~~i~~~~~g-----l~~~~kp~~~~Lf~GP~GvG 500 (758)
T PRK11034 440 -----SVSQSDRDTLKNLGDR-L--------KMLVFGQDKAIEALTEAIKMSRAG-----LGHEHKPVGSFLFAGPTGVG 500 (758)
T ss_pred -----hhhhhHHHHHHHHHHH-h--------cceEeCcHHHHHHHHHHHHHHhcc-----ccCCCCCcceEEEECCCCCC
Confidence 011111111 01000 0 123689999999988887632110 01124566789999999999
Q ss_pred HHHHHHHHHHHhCCCcceeeccccc-----hhcccccHHHH-----HHHHHHHHhcCCceEEEccchhhhcCCCCCchHH
Q 003253 582 KTMLAKAVATEAGANFINISMSSIT-----SKWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHE 651 (836)
Q Consensus 582 KT~LA~alA~~l~~~~i~v~~s~l~-----s~~~g~~e~~i-----~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~ 651 (836)
||++|+++|..++.+++.++|+++. +.++|.+.+++ ..+.+..++.+.+||||||||.+ +
T Consensus 501 KT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----~----- 570 (758)
T PRK11034 501 KTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----H----- 570 (758)
T ss_pred HHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----h-----
Confidence 9999999999999999999998763 34555544433 23445556677799999999987 2
Q ss_pred HHHHHHHHHHHHhcCCccc-------CcccEEEEeccCCC-------------------------CCCcHHHHhhccccc
Q 003253 652 AMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRP-------------------------FDLDEAVIRRLPRRL 699 (836)
Q Consensus 652 ~~~~il~~ll~~ld~~~~~-------~~~~vlVIaTTn~~-------------------------~~Ld~~l~rRf~~~I 699 (836)
..+.+.|+..++..... +-.++++|+|||.. ..+.|+++.|++.++
T Consensus 571 --~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii 648 (758)
T PRK11034 571 --PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNII 648 (758)
T ss_pred --HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEE
Confidence 34555666666533211 22578899999932 136689999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhh-------CCCC---CcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH
Q 003253 700 MVNLPDAPNRAKILQVILAK-------EDLS---PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKE 757 (836)
Q Consensus 700 ~v~~P~~~eR~~Il~~~l~~-------~~l~---~d~dl~~LA~~t--~G~sg~DL~~L~~~A~~~air~ 757 (836)
.|++.+.++..+|+...+.+ .++. .+.-++.|+... ..|-.+.|+.+++.-...++.+
T Consensus 649 ~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 649 WFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999877653 2332 223345555432 2344566666666655555443
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-31 Score=318.24 Aligned_cols=384 Identities=19% Similarity=0.236 Sum_probs=262.4
Q ss_pred CccccccccccccccchhHHHHHHHHHHhccCCcccc-cccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 003253 19 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 97 (836)
Q Consensus 19 ~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~-~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~ 97 (836)
+.+..|+||+.+++ ++.++.|.|.+..+|-.|++. +| ++++ ++++||+||||| +++..|+|||-+.--
T Consensus 257 ~~~~~v~fd~vggl--~~~i~~LKEmVl~PLlyPE~f~~~--~itp-PrgvL~~GppGT--GkTl~araLa~~~s~---- 325 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGL--ENYINQLKEMVLLPLLYPEFFDNF--NITP-PRGVLFHGPPGT--GKTLMARALAAACSR---- 325 (1080)
T ss_pred hhhcccCccccccH--HHHHHHHHHHHHhHhhhhhHhhhc--ccCC-CcceeecCCCCC--chhHHHHhhhhhhcc----
Confidence 45678999999999 999999999999999999986 44 3444 777999999999 999999999853200
Q ss_pred EeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 003253 98 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 177 (836)
Q Consensus 98 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (836)
|
T Consensus 326 -------~------------------------------------------------------------------------ 326 (1080)
T KOG0732|consen 326 -------G------------------------------------------------------------------------ 326 (1080)
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred cccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccc
Q 003253 178 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 257 (836)
Q Consensus 178 ~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~ 257 (836)
++...|||+
T Consensus 327 -----------------------------------------------------------------------~~kisffmr 335 (1080)
T KOG0732|consen 327 -----------------------------------------------------------------------NRKISFFMR 335 (1080)
T ss_pred -----------------------------------------------------------------------ccccchhhh
Confidence 001368999
Q ss_pred cccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc----cCcchhhHHHHHHhcC------CCcEEEE
Q 003253 258 VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRLEKL------PDKVIVI 327 (836)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~----~~~~~~~~l~~~l~~l------~g~v~vI 327 (836)
++++|+++|+|| +.+.+.-||+.+.+ ++|.||||||||.+.- .+.+.|+.+++.|..| .|+|+||
T Consensus 336 kgaD~lskwvgE--aERqlrllFeeA~k---~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvi 410 (1080)
T KOG0732|consen 336 KGADCLSKWVGE--AERQLRLLFEEAQK---TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVI 410 (1080)
T ss_pred cCchhhccccCc--HHHHHHHHHHHHhc---cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEE
Confidence 999999999999 99999999999999 9999999999998443 4567777777777333 5799999
Q ss_pred eeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHH
Q 003253 328 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 407 (836)
Q Consensus 328 gs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~ 407 (836)
|||||+|+ +|+|+||||| |..++.|++|+.++|.+|+.+
T Consensus 411 gATnRpda----------------------~dpaLRRPgr-------------------fdref~f~lp~~~ar~~Il~I 449 (1080)
T KOG0732|consen 411 GATNRPDA----------------------IDPALRRPGR-------------------FDREFYFPLPDVDARAKILDI 449 (1080)
T ss_pred cccCCccc----------------------cchhhcCCcc-------------------cceeEeeeCCchHHHHHHHHH
Confidence 99999995 9999999999 999999999999999999999
Q ss_pred hhHhhhhhhhccC-CchhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCC--CCcccccccch
Q 003253 408 QLDRDSETLKMKG-NLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEAD--PDARLVLSCES 484 (836)
Q Consensus 408 ~l~e~~~~~~~~~-n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~--~~~~~~i~~~~ 484 (836)
|..+ +.-.. ..-....+..+.||.|+||+.||+.+++...+ + ..... ...++.+....
T Consensus 450 htrk----w~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~-----------r----~~Pq~y~s~~kl~~d~~~ 510 (1080)
T KOG0732|consen 450 HTRK----WEPPISRELLLWLAEETSGYGGADLKALCTEAALIALR-----------R----SFPQIYSSSDKLLIDVAL 510 (1080)
T ss_pred hccC----CCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhc-----------c----ccCeeecccccccccchh
Confidence 9843 22222 22345567788999999999999988872211 1 11110 11122111111
Q ss_pred ----hhhhhhHHHHHHHhhhhh--------hccccccCCHHHHHHHHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhc
Q 003253 485 ----IQYGIGIFQAIQNESKSL--------KKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVML 552 (836)
Q Consensus 485 ----~~~~~~~~~~i~~~~~~~--------~~~~~~~v~~~d~~~~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~ 552 (836)
+.+.+.++.++.+..... ...++..++-.+... .+.+. .-.......+.+...+
T Consensus 511 ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~-~iq~~-------------~~va~~~~k~~e~~~~ 576 (1080)
T KOG0732|consen 511 IKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALE-DIQGL-------------MDVASSMAKIEEHLKL 576 (1080)
T ss_pred hhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHH-Hhhcc-------------hhHHhhhhhHHHHhHH
Confidence 111222222222211110 000000000000100 11111 1111111222221111
Q ss_pred cccChhh-hhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCCcceeeccccchhc-ccccHHHHHHHHHHHHhcCC
Q 003253 553 PLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAP 629 (836)
Q Consensus 553 ~l~~~e~-~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-~~~~i~v~~s~l~s~~-~g~~e~~i~~lf~~A~~~~p 629 (836)
.....+. |.-..+.+ ..+||.|..|.|-+++..||-+.+ +.++...+.+.+.... .+..+..+..+|..|++..|
T Consensus 577 ~v~~~e~~~~i~lic~--~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~p 654 (1080)
T KOG0732|consen 577 LVRSFESNFAIRLICR--PRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTP 654 (1080)
T ss_pred HHHhhhcccchhhhcC--cHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCC
Confidence 1111110 01111222 259999999999999999999988 8888888888877766 67778899999999999999
Q ss_pred ceEEEccchhhhcCC
Q 003253 630 SVIFVDEVDSMLGRR 644 (836)
Q Consensus 630 sIL~IDEID~L~~~r 644 (836)
|||||.++|.|....
T Consensus 655 si~~ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 655 SIVFIPNVDEWARVI 669 (1080)
T ss_pred ceeeccchhhhhhcC
Confidence 999999999996443
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=6.9e-30 Score=286.32 Aligned_cols=244 Identities=43% Similarity=0.721 Sum_probs=214.2
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.++|+|++|++++++.+++.+..|+.+++.|...+. .+++++||+||||||||++|+++|++++.+|+.+.+.++..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45789999999999999999999999999999988775 45589999999999999999999999999999999999988
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCc--hHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~--~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
.+.|+....++.+|..++...|+||||||+|.++..+.... ......+.+.+++..+++... ..++.||+|||.++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 99999999999999999999999999999999986654321 122334556677777777643 35799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.+++++++ ||++.+.|+.|+.++|.+||+.++....+..+.++..++..++||+|+||.++|.+|++.|+++
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~------ 346 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE------ 346 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998888777889999999999999999999999999998875
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 800 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v 800 (836)
....|+.+||.+|++++
T Consensus 347 --------------------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 347 --------------------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred --------------------CCCccCHHHHHHHHHHh
Confidence 12469999999999876
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=2.8e-30 Score=313.40 Aligned_cols=290 Identities=38% Similarity=0.624 Sum_probs=247.0
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
+.++|+||+|++.+++.+++.+..|+.+++.|...++ .++.++||+||||||||++|+++|++++.+++.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4689999999999999999999999999999988775 456899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 688 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld 688 (836)
+.|..+..++.+|..|....|+||||||||.+++.+.... .....++.++|+..++++.. ..+++||++||.++.++
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999987765432 23346678888888888743 36799999999999999
Q ss_pred HHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 689 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 766 (836)
Q Consensus 689 ~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~ 766 (836)
+++++ ||+..+.++.|+.++|.+||+.+.....+..+.++..++..++||+++|+..+|..|+..++++.+.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 9999999999999999999999988887777889999999999999999999999999999988654211100
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCCCccc
Q 003253 767 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRRK 829 (836)
Q Consensus 767 ~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~~r~~ 829 (836)
. ....+ ........++++||..|++.+.|+...+.....|.+.|++++|...+|+.
T Consensus 409 ~---~~~i~----~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~ 464 (733)
T TIGR01243 409 E---AEEIP----AEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQE 464 (733)
T ss_pred c---ccccc----chhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHH
Confidence 0 00000 01112346899999999999999998887777799999999999888753
No 37
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=8e-30 Score=300.55 Aligned_cols=268 Identities=37% Similarity=0.567 Sum_probs=223.5
Q ss_pred CCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc
Q 003253 527 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 606 (836)
Q Consensus 527 ~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~ 606 (836)
....++|+|++|++++++++.+.+.. +..++.|...+. .+++++||+||||||||++|+++|.+++.||+.++++++.
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 34468999999999999999998765 778888776664 4568999999999999999999999999999999999998
Q ss_pred hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCC--CchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 607 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 607 s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~--~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
..+.|.....++.+|..|+...|+||||||||.++..+.. ...+.....+++.++..+++... +.+++||++||.+
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~ 331 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRV 331 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCch
Confidence 8888888888999999999999999999999999866532 22344556788889999988754 3679999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 685 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 762 (836)
Q Consensus 685 ~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~ 762 (836)
+.+|++++| ||++.+.+++|+.++|.+||+.++.+..+..+.++..+|..+.||+++||.++|++|+..+.++
T Consensus 332 ~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~----- 406 (638)
T CHL00176 332 DILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR----- 406 (638)
T ss_pred HhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 9999999999999999999999999877778889999999999999999999999999877654
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCC
Q 003253 763 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 825 (836)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~ 825 (836)
....++++||+.|++++........ ...+..+|---|.+.|
T Consensus 407 ---------------------~~~~It~~dl~~Ai~rv~~g~~~~~-~~~~~~~~~vA~hEaG 447 (638)
T CHL00176 407 ---------------------KKATITMKEIDTAIDRVIAGLEGTP-LEDSKNKRLIAYHEVG 447 (638)
T ss_pred ---------------------CCCCcCHHHHHHHHHHHHhhhccCc-cccHHHHHHHHHHhhh
Confidence 2246999999999998854433221 2234445544444433
No 38
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=3.5e-29 Score=286.49 Aligned_cols=275 Identities=29% Similarity=0.500 Sum_probs=214.7
Q ss_pred CCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC----------
Q 003253 527 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------- 596 (836)
Q Consensus 527 ~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~---------- 596 (836)
..+.++|+||+|++..++++++.+..|+.+++.|...++ .|++++|||||||||||++|+++|++++.+
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 345689999999999999999999999999999988775 456899999999999999999999998654
Q ss_pred cceeeccccchhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCc
Q 003253 597 FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 672 (836)
Q Consensus 597 ~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~ 672 (836)
|+.+..+++.++|.|+.+..++.+|..|+.. .|+||||||+|.++..+.........++++++|+..++++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~-- 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL-- 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--
Confidence 5567778888999999999999999998764 6999999999999987765444445577889999999998543
Q ss_pred ccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhC-CCC---------CcccHHHHHHH------
Q 003253 673 ERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE-DLS---------PDVDFDAIANM------ 734 (836)
Q Consensus 673 ~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~-~l~---------~d~dl~~LA~~------ 734 (836)
.+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... .+. ...+...+++.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 579999999999999999999 999999999999999999999998642 221 11112222211
Q ss_pred -----------------------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHH
Q 003253 735 -----------------------TDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMD 791 (836)
Q Consensus 735 -----------------------t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~e 791 (836)
++.+||++|.++|..|...|+++.+. .....++++
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~----------------------~~~~~~~~~ 469 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT----------------------GGQVGLRIE 469 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh----------------------cCCcCcCHH
Confidence 45567777777777777777766432 012478999
Q ss_pred HHHHHHHHhccCccccccchhhHHHHHHHhcCCCCc
Q 003253 792 DFKYAHERVCASVSSESVNMSELLQWNELYGEGGSR 827 (836)
Q Consensus 792 Df~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~~r 827 (836)
|+..|+..-...... ......-..|..|.|..|-|
T Consensus 470 ~l~~a~~~e~~~~~~-~~~~~~~~~w~~~~~~~~~~ 504 (512)
T TIGR03689 470 HLLAAVLDEFRESED-LPNTTNPDDWARISGKKGER 504 (512)
T ss_pred HHHHHHHHhhccccc-CCCCCCHHHHhhhhCCCCCc
Confidence 999999865332221 11122335799998887644
No 39
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.9e-30 Score=265.77 Aligned_cols=245 Identities=36% Similarity=0.661 Sum_probs=217.3
Q ss_pred CCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc
Q 003253 527 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 606 (836)
Q Consensus 527 ~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~ 606 (836)
....++|+.++|.-.+..++++.+..|+..|++|.+.++ +||.+++||||||+|||.+|+++|..+|++|+.+.++++.
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 344689999999999999999999999999999998775 6679999999999999999999999999999999999999
Q ss_pred hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCc--hHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 607 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 607 s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~--~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
++++|++...+++.|..|+.+.|||||+||||.+.+++.+.. ......+.+-+++.+|++... ..+|-+|+|||+|
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrp 281 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRP 281 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCc
Confidence 999999999999999999999999999999999998875432 334456666777888888754 3789999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 685 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 762 (836)
Q Consensus 685 ~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~ 762 (836)
+.|+|+++| |+++.+.+|+|+...|..|++..........+++.+.+.+..+||.++|+++.|.+|.+.++++.
T Consensus 282 dtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~---- 357 (388)
T KOG0651|consen 282 DTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE---- 357 (388)
T ss_pred cccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh----
Confidence 999999999 99999999999999999999988777666678889999999999999999999999998887751
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 003253 763 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 800 (836)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v 800 (836)
.-.+.+|||..++.++
T Consensus 358 ----------------------~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 358 ----------------------RDEVLHEDFMKLVRKQ 373 (388)
T ss_pred ----------------------hHHHhHHHHHHHHHHH
Confidence 1236778888888776
No 40
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=9.7e-29 Score=294.34 Aligned_cols=267 Identities=39% Similarity=0.590 Sum_probs=227.2
Q ss_pred CCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc
Q 003253 527 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 606 (836)
Q Consensus 527 ~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~ 606 (836)
.....+|+|+.|.+..++.+.+.+.. +..++.+...+. ..++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 34457899999999999999998876 455665554432 4457899999999999999999999999999999999999
Q ss_pred hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCC--CchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 607 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 607 s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~--~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
..+.|.....++.+|..|+..+|+||||||||.++..+.. .+.+....+++++++..++++.. +..++||+|||++
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p 300 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 300 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCCh
Confidence 9999999999999999999999999999999999877643 23344556788999999998754 3679999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 685 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 762 (836)
Q Consensus 685 ~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~ 762 (836)
+.+|++++| ||++.+.|+.|+.++|.+||+.++.+.++..+.++..+|+.+.||+|+||.++|++|+..++++
T Consensus 301 ~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~----- 375 (644)
T PRK10733 301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 375 (644)
T ss_pred hhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999998 9999999999999999999999999988888899999999999999999999999999988764
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcC
Q 003253 763 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGE 823 (836)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~ 823 (836)
....++++||++|++++.++.......+.+..+|.--|.+
T Consensus 376 ---------------------~~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he 415 (644)
T PRK10733 376 ---------------------NKRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHE 415 (644)
T ss_pred ---------------------CCCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 2246999999999999988776655555555555554444
No 41
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.7e-29 Score=265.99 Aligned_cols=219 Identities=20% Similarity=0.306 Sum_probs=189.8
Q ss_pred HHHcccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhH
Q 003253 11 DILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHY 90 (836)
Q Consensus 11 ~~~~~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~ 90 (836)
.|.+.|+ -++.+|.||++-.. ++.|.+|.|||..++..|+|++. +....++|||.||||| +++|||||+|.+
T Consensus 197 ~lerdIl-~~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~F~G---irrPWkgvLm~GPPGT--GKTlLAKAvATE 268 (491)
T KOG0738|consen 197 ALERDIL-QRNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEFFKG---IRRPWKGVLMVGPPGT--GKTLLAKAVATE 268 (491)
T ss_pred HHHHHHh-ccCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHHHhh---cccccceeeeeCCCCC--cHHHHHHHHHHh
Confidence 3444444 35677999999999 99999999999999999999764 7788999999999999 999999999999
Q ss_pred hCCeEEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 003253 91 FGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETD 170 (836)
Q Consensus 91 ~~~~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (836)
.|..|..|-|+.|..
T Consensus 269 c~tTFFNVSsstltS----------------------------------------------------------------- 283 (491)
T KOG0738|consen 269 CGTTFFNVSSSTLTS----------------------------------------------------------------- 283 (491)
T ss_pred hcCeEEEechhhhhh-----------------------------------------------------------------
Confidence 999999998866554
Q ss_pred ccccccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCC
Q 003253 171 TTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEG 250 (836)
Q Consensus 171 ~~~~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~ 250 (836)
||.|+
T Consensus 284 --------------------KwRGe------------------------------------------------------- 288 (491)
T KOG0738|consen 284 --------------------KWRGE------------------------------------------------------- 288 (491)
T ss_pred --------------------hhccc-------------------------------------------------------
Confidence 77777
Q ss_pred CcccccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc--cC---cchhhHHHHHH----hcCC
Q 003253 251 GHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--GN---SDSYSTFKSRL----EKLP 321 (836)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~--~~---~~~~~~l~~~l----~~l~ 321 (836)
.+++|+-||++|.. ..|.+|||||||.+-. |+ -|....||+.| +.+.
T Consensus 289 ---------------------SEKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~ 344 (491)
T KOG0738|consen 289 ---------------------SEKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ 344 (491)
T ss_pred ---------------------hHHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc
Confidence 68999999999999 9999999999999554 22 34444555555 4443
Q ss_pred C---c---EEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecC
Q 003253 322 D---K---VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHM 395 (836)
Q Consensus 322 g---~---v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~l 395 (836)
+ + |+|++|||.|- |+|+|+.|||+.+|.|+|
T Consensus 345 ~t~e~~k~VmVLAATN~PW-------------------------------------------diDEAlrRRlEKRIyIPL 381 (491)
T KOG0738|consen 345 GTLENSKVVMVLAATNFPW-------------------------------------------DIDEALRRRLEKRIYIPL 381 (491)
T ss_pred cccccceeEEEEeccCCCc-------------------------------------------chHHHHHHHHhhheeeeC
Confidence 2 4 99999999986 889999999999999999
Q ss_pred CChHHHHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 396 PQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 396 P~~e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
|+.++|...+++.| ..+...+.+++...+..+.||+|+||..+|+++.+
T Consensus 382 P~~~~R~~Li~~~l----~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm 430 (491)
T KOG0738|consen 382 PDAEARSALIKILL----RSVELDDPVNLEDLAERSEGYSGADITNVCREASM 430 (491)
T ss_pred CCHHHHHHHHHHhh----ccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 99999999999998 67888999999999999999999999999999887
No 42
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=2.5e-27 Score=288.91 Aligned_cols=424 Identities=16% Similarity=0.184 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc-----cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCcc
Q 003253 272 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLL 346 (836)
Q Consensus 272 ~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~-----~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~ 346 (836)
....++.+++.+.. ..+++||||||||.+.+ ++++..+.|++.|.+ |.+.|||+||..+++
T Consensus 264 ~e~~lk~ii~e~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~---------- 329 (852)
T TIGR03345 264 FENRLKSVIDEVKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYK---------- 329 (852)
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHh----------
Confidence 34556666665543 15799999999999875 567788899999965 999999999987642
Q ss_pred ccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH--hhhhhhhccCCchh
Q 003253 347 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD--RDSETLKMKGNLNH 424 (836)
Q Consensus 347 ~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~--e~~~~~~~~~n~~~ 424 (836)
.+.+.|.+|.||| +.|.|.+|+.+++.+||+.... +.++.+.+.++...
T Consensus 330 ----------------------------~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~ 380 (852)
T TIGR03345 330 ----------------------------KYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVV 380 (852)
T ss_pred ----------------------------hhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHH
Confidence 2336799999999 7999999999999999874332 22345556665555
Q ss_pred HHHHhhccCCCcCchhhhhhhccccchH--------------HHHHHHHHHHHH--HhhcCCC---CCCCc--ccccccc
Q 003253 425 LRTVLGRSGLECEGLETLCIRDQSLTNE--------------SAEKIVGWALSH--HLMQNPE---ADPDA--RLVLSCE 483 (836)
Q Consensus 425 i~~~l~t~g~s~~DL~~Lc~~~~~~s~~--------------~ie~IV~~A~s~--~l~~~~d---~~~~~--~~~i~~~ 483 (836)
....+...++...-|+..+++-..-.++ .++.-+..+... .+.+... ..... .+.....
T Consensus 381 ~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (852)
T TIGR03345 381 AAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELA 460 (852)
T ss_pred HHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHH
Confidence 5555666666666666655532221111 111001000000 0000000 00000 0000000
Q ss_pred hhhhhhhHHHH---------------------------------------HHHhhhhhhc---cccccCCHHHHHHHHhc
Q 003253 484 SIQYGIGIFQA---------------------------------------IQNESKSLKK---SLKDVVTENEFEKRLLA 521 (836)
Q Consensus 484 ~~~~~~~~~~~---------------------------------------i~~~~~~~~~---~~~~~v~~~d~~~~l~~ 521 (836)
.+...+..+.. +......... .....++.+++.. +++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-vv~ 539 (852)
T TIGR03345 461 ALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAE-VVA 539 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHH-HHH
Confidence 00000000000 0000000000 0012255565554 445
Q ss_pred CcCCCCCCcccch--------------hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHH
Q 003253 522 DVIPPSDIGVTFD--------------DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAK 587 (836)
Q Consensus 522 ~ii~~~~~~~~~~--------------di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~ 587 (836)
.+..++...+.-+ .++|++...+.+.+.+...... -....+|...+||+||||+|||.+|+
T Consensus 540 ~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~g-----l~~~~~p~~~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 540 DWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAG-----LEDPRKPLGVFLLVGPSGVGKTETAL 614 (852)
T ss_pred HHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcC-----CCCCCCCceEEEEECCCCCCHHHHHH
Confidence 5555444333222 3567777776666666431100 01123455569999999999999999
Q ss_pred HHHHHh---CCCcceeeccccc-----hhcccccHHHH-----HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHH
Q 003253 588 AVATEA---GANFINISMSSIT-----SKWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMR 654 (836)
Q Consensus 588 alA~~l---~~~~i~v~~s~l~-----s~~~g~~e~~i-----~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~ 654 (836)
++|..+ ...++.++|+++. +.++|.+.+++ ..+.+..++.+++||+|||||.+ + .
T Consensus 615 ~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka-----~-------~ 682 (852)
T TIGR03345 615 ALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA-----H-------P 682 (852)
T ss_pred HHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc-----C-------H
Confidence 999998 4578999998763 23445444433 23456667788899999999966 2 2
Q ss_pred HHHHHHHHHhcCCccc-------CcccEEEEeccCCCC-----------------------------CCcHHHHhhcccc
Q 003253 655 KMKNEFMVNWDGLRTK-------DTERILVLAATNRPF-----------------------------DLDEAVIRRLPRR 698 (836)
Q Consensus 655 ~il~~ll~~ld~~~~~-------~~~~vlVIaTTn~~~-----------------------------~Ld~~l~rRf~~~ 698 (836)
.+.+.|+..++..... +-.+.+||+|||... .+.|++++|++ +
T Consensus 683 ~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-i 761 (852)
T TIGR03345 683 DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-V 761 (852)
T ss_pred HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-E
Confidence 3444455555443211 125689999998521 15678888996 8
Q ss_pred ccCCCCCHHHHHHHHHHHHhhC--------CCC---CcccHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHH
Q 003253 699 LMVNLPDAPNRAKILQVILAKE--------DLS---PDVDFDAIANMTDG--YSGSDLKNLCVTAAHRPIKE 757 (836)
Q Consensus 699 I~v~~P~~~eR~~Il~~~l~~~--------~l~---~d~dl~~LA~~t~G--~sg~DL~~L~~~A~~~air~ 757 (836)
|.|.+.+.++..+|+...+... ++. ++...+.|+....+ |-.+.|.++++.-...++.+
T Consensus 762 I~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 762 IPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999998877541 222 23335566666533 45677777777766655554
No 43
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=6.1e-27 Score=286.60 Aligned_cols=413 Identities=17% Similarity=0.209 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhc-----cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLF 347 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~-----~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~ 347 (836)
...+..+++.+.. .+|+||||||||.+++ |..+..+.|++.|.+ |.|.+||+||..++++
T Consensus 257 e~rl~~i~~~~~~---~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~---------- 321 (821)
T CHL00095 257 EERLKRIFDEIQE---NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRK---------- 321 (821)
T ss_pred HHHHHHHHHHHHh---cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHH----------
Confidence 4456777777766 7899999999999886 345678999999965 9999999999887422
Q ss_pred cccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH--hhhhhhhccCCchhH
Q 003253 348 TKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD--RDSETLKMKGNLNHL 425 (836)
Q Consensus 348 ~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~--e~~~~~~~~~n~~~i 425 (836)
+.+.|.++.+|| +.|.+.+|+.++...|++.... +.++++.+.++....
T Consensus 322 ----------------------------~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~ 372 (821)
T CHL00095 322 ----------------------------HIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEA 372 (821)
T ss_pred ----------------------------HHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 235578899999 6899999999999999985433 333444443333222
Q ss_pred HHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCccc-------------ccccchhhhhhhH-
Q 003253 426 RTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARL-------------VLSCESIQYGIGI- 491 (836)
Q Consensus 426 ~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~-------------~i~~~~~~~~~~~- 491 (836)
...+...++. +..+++.+|+.+=..+....+.....|.....+ .+...++......
T Consensus 373 i~~ls~~yi~----------~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (821)
T CHL00095 373 AAKLSDQYIA----------DRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLR 442 (821)
T ss_pred HHHHhhccCc----------cccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 2233333433 334444444444222222222221111100000 0000011100000
Q ss_pred ------HHH---HHHhhhhh--hccccccCCHHHHHHHHhcCcCCCCCCcccc--------------hhhhchHHHHHHH
Q 003253 492 ------FQA---IQNESKSL--KKSLKDVVTENEFEKRLLADVIPPSDIGVTF--------------DDIGALENVKDTL 546 (836)
Q Consensus 492 ------~~~---i~~~~~~~--~~~~~~~v~~~d~~~~l~~~ii~~~~~~~~~--------------~di~G~~~vk~~L 546 (836)
.+. +....... .......++.+++.. ++..+...+...+.- ..++|++.+.+.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~-~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l 521 (821)
T CHL00095 443 DREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAE-IVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAV 521 (821)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHH-HHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHH
Confidence 000 00000000 001113467777765 455555554433322 2367777777777
Q ss_pred HHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc-----hhcccccHHHH-
Q 003253 547 KELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-----SKWFGEGEKYV- 617 (836)
Q Consensus 547 ~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~-----s~~~g~~e~~i- 617 (836)
...+...... -....+|...+||+||+|+|||++|+++|+.+ +.+++.++++++. +.++|.+.+++
T Consensus 522 ~~~i~~~~~g-----l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg 596 (821)
T CHL00095 522 SKAIRRARVG-----LKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVG 596 (821)
T ss_pred HHHHHHHhhc-----ccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccC
Confidence 6666421100 01224566679999999999999999999988 4689999998763 33444443333
Q ss_pred ----HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcc-------cCcccEEEEeccCCCCC
Q 003253 618 ----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDTERILVLAATNRPFD 686 (836)
Q Consensus 618 ----~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~-------~~~~~vlVIaTTn~~~~ 686 (836)
..+.+..++.+.+||+|||||.+ . ..+.+.|+..++.... -+-.+.++|+|||....
T Consensus 597 ~~~~~~l~~~~~~~p~~VvllDeieka-----~-------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~ 664 (821)
T CHL00095 597 YNEGGQLTEAVRKKPYTVVLFDEIEKA-----H-------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSK 664 (821)
T ss_pred cCccchHHHHHHhCCCeEEEECChhhC-----C-------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchH
Confidence 34667777778899999999977 2 3345555555554321 12367899999885210
Q ss_pred -------------------------------------CcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC-------CC
Q 003253 687 -------------------------------------LDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DL 722 (836)
Q Consensus 687 -------------------------------------Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~-------~l 722 (836)
+.|++++|++.++.|.+.+.++..+|++..+.+. ++
T Consensus 665 ~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i 744 (821)
T CHL00095 665 VIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGI 744 (821)
T ss_pred HHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 3467888999999999999999999998877642 22
Q ss_pred C---CcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH
Q 003253 723 S---PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKE 757 (836)
Q Consensus 723 ~---~d~dl~~LA~~t--~G~sg~DL~~L~~~A~~~air~ 757 (836)
. .+...+.|+... ..|-.+.|+.+++.-...++.+
T Consensus 745 ~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 745 QLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred EEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 2 222345566542 2344566666666555544443
No 44
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.96 E-value=2.2e-28 Score=248.79 Aligned_cols=212 Identities=20% Similarity=0.334 Sum_probs=182.1
Q ss_pred ccccccccccccchhHHHHHHHHHHhccCCcccc-cccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 22 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 22 ~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~-~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
.++|||+.=+- |..|.-- .-..=+|+.|+.+ +| ++++||++||||| +++|+|||||++..+|||.+.+
T Consensus 116 ~~it~ddViGq--EeAK~kc-rli~~yLenPe~Fg~W------APknVLFyGppGT--GKTm~Akalane~kvp~l~vka 184 (368)
T COG1223 116 SDITLDDVIGQ--EEAKRKC-RLIMEYLENPERFGDW------APKNVLFYGPPGT--GKTMMAKALANEAKVPLLLVKA 184 (368)
T ss_pred ccccHhhhhch--HHHHHHH-HHHHHHhhChHHhccc------CcceeEEECCCCc--cHHHHHHHHhcccCCceEEech
Confidence 47889988887 7777531 1123468888764 55 5899999999999 9999999999999999999999
Q ss_pred cccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 003253 101 HSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSK 180 (836)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (836)
+.|.|
T Consensus 185 t~liG--------------------------------------------------------------------------- 189 (368)
T COG1223 185 TELIG--------------------------------------------------------------------------- 189 (368)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 99999
Q ss_pred ccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccccc
Q 003253 181 NHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTD 260 (836)
Q Consensus 181 ~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~ 260 (836)
+|||+
T Consensus 190 ----------ehVGd----------------------------------------------------------------- 194 (368)
T COG1223 190 ----------EHVGD----------------------------------------------------------------- 194 (368)
T ss_pred ----------HHhhh-----------------------------------------------------------------
Confidence 66776
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc---------cCcchhhHHHHHHhcCC--CcEEEEee
Q 003253 261 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA---------GNSDSYSTFKSRLEKLP--DKVIVIGS 329 (836)
Q Consensus 261 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~---------~~~~~~~~l~~~l~~l~--g~v~vIgs 329 (836)
..+.|++||+.+++ ..|||+||||+|.+-. +..++.|.|.+.|+.+. .+|+.|||
T Consensus 195 -----------gar~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 195 -----------GARRIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred -----------HHHHHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 68899999999999 9999999999999664 56888999999998875 48999999
Q ss_pred eccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhh
Q 003253 330 HTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 330 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l 409 (836)
||+++ |||+| |..||+.+|++.||++++|+.|++.+.
T Consensus 261 TN~p~----------------------~LD~a---------------------iRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 261 TNRPE----------------------LLDPA---------------------IRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred cCChh----------------------hcCHH---------------------HHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 99997 66655 889999999999999999999999888
Q ss_pred HhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcC
Q 003253 410 DRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQN 469 (836)
Q Consensus 410 ~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~ 469 (836)
+++.++-+.+....+..+.|+||+||+ |++++.|+.+++...
T Consensus 298 ----k~~Plpv~~~~~~~~~~t~g~SgRdik--------------ekvlK~aLh~Ai~ed 339 (368)
T COG1223 298 ----KKFPLPVDADLRYLAAKTKGMSGRDIK--------------EKVLKTALHRAIAED 339 (368)
T ss_pred ----HhCCCccccCHHHHHHHhCCCCchhHH--------------HHHHHHHHHHHHHhc
Confidence 677888888888889999999999999 888899888887643
No 45
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.8e-28 Score=288.84 Aligned_cols=270 Identities=35% Similarity=0.544 Sum_probs=225.1
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeec
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISM 602 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~ 602 (836)
+..++|++++|+++++.+|++.|..|+.+|+.|....+ .|++++|++||||||||..|+|+|..+ ...|+.-..
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i-tpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI-TPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc-CCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 44689999999999999999999999999999998875 456999999999999999999999888 456777778
Q ss_pred cccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccC
Q 003253 603 SSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 682 (836)
Q Consensus 603 s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn 682 (836)
++..++|+|+.+..++.+|+.|++.+|+|||+||||-|.+.+....+ ..+..+..+++.+|+|+... +.|+||++||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE-qih~SIvSTLLaLmdGldsR--gqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE-QIHASIVSTLLALMDGLDSR--GQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH-HhhhhHHHHHHHhccCCCCC--CceEEEcccC
Confidence 88999999999999999999999999999999999999888855433 34567889999999999754 7899999999
Q ss_pred CCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Q 003253 683 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEIL 759 (836)
Q Consensus 683 ~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~ 759 (836)
+++.++++++| ||++.++|++|+.+.|.+|+.....+..-. ...-...||..+.||.|+||+.||.+|+..++++-.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999 999999999999999999999987765422 344578899999999999999999999999988622
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccch
Q 003253 760 EKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNM 811 (836)
Q Consensus 760 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~ 811 (836)
..... ...+.. -......|..+||..|+.++.|+..+....+
T Consensus 495 Pq~y~------s~~kl~----~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~ 536 (1080)
T KOG0732|consen 495 PQIYS------SSDKLL----IDVALIKVEVRDFVEAMSRITPSSRRSSVIF 536 (1080)
T ss_pred Ceeec------cccccc----ccchhhhhhhHhhhhhhhccCCCCCccccCC
Confidence 11100 000000 1112234899999999999999988764443
No 46
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=1e-27 Score=295.05 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=169.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhc------------------------------------
Q 003253 566 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW------------------------------------ 609 (836)
Q Consensus 566 ~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~------------------------------------ 609 (836)
..|++||||+||||||||+||+|+|.++++||+.+++++++..+
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 36779999999999999999999999999999999999987643
Q ss_pred -----ccccHH--HHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcc-cCcccEEEEecc
Q 003253 610 -----FGEGEK--YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDTERILVLAAT 681 (836)
Q Consensus 610 -----~g~~e~--~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~-~~~~~vlVIaTT 681 (836)
.+..+. .++.+|+.|++.+||||||||||.+...+.. ...+.+++..+++... ....+|+|||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~-------~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN-------YLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc-------eehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 112222 3788999999999999999999999654211 1236778888887642 234679999999
Q ss_pred CCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhh--CCCCC-cccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 003253 682 NRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAK--EDLSP-DVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 756 (836)
Q Consensus 682 n~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~--~~l~~-d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air 756 (836)
|+|+.||||++| ||++.|.|+.|+..+|.+++..++.. ..+.. .++++.+|..|.||+|+||.+||++|+..|++
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAir 1859 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISIT 1859 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999998876533 33443 35799999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccc
Q 003253 757 EILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSS 806 (836)
Q Consensus 757 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~ 806 (836)
+ ....|+++||+.|+.++......
T Consensus 1860 q--------------------------~ks~Id~~~I~~Al~Rq~~g~~~ 1883 (2281)
T CHL00206 1860 Q--------------------------KKSIIDTNTIRSALHRQTWDLRS 1883 (2281)
T ss_pred c--------------------------CCCccCHHHHHHHHHHHHhhhhh
Confidence 6 12357788888888877655443
No 47
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=1.2e-26 Score=283.89 Aligned_cols=410 Identities=19% Similarity=0.253 Sum_probs=231.4
Q ss_pred HHHHHHHHHHH-hhccCCCCeEEEEcCchhhhc-----cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCcc
Q 003253 273 KLLINTLFEVV-FSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLL 346 (836)
Q Consensus 273 ~~~i~~l~~~~-~~~~~~~p~Ilfi~ei~~~l~-----~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~ 346 (836)
...++.+++.+ .. .+|+||||||+|.+++ |..+..+.|++.|.+ |.+.|||+||..+++
T Consensus 256 e~~lk~~~~~~~~~---~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~r---------- 320 (857)
T PRK10865 256 EERLKGVLNDLAKQ---EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYR---------- 320 (857)
T ss_pred HHHHHHHHHHHHHc---CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHHH----------
Confidence 44455555443 33 6899999999999875 456788999999954 999999999998742
Q ss_pred ccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh--hhhhhhccCCchh
Q 003253 347 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR--DSETLKMKGNLNH 424 (836)
Q Consensus 347 ~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e--~~~~~~~~~n~~~ 424 (836)
.+++.|.++.||| +.|.+.+|+.++++.||+....+ .++++.+.+....
T Consensus 321 ----------------------------~~~~~d~al~rRf-~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~ 371 (857)
T PRK10865 321 ----------------------------QYIEKDAALERRF-QKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIV 371 (857)
T ss_pred ----------------------------HHhhhcHHHHhhC-CEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHH
Confidence 2346788999999 68999999999999999855432 3334444443333
Q ss_pred HHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCC--------------------C------ccc
Q 003253 425 LRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADP--------------------D------ARL 478 (836)
Q Consensus 425 i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~--------------------~------~~~ 478 (836)
....+...++...- |++.+++.+=..|....+.....|.. . .++
T Consensus 372 ~a~~ls~ry~~~~~----------~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~ 441 (857)
T PRK10865 372 AAATLSHRYIADRQ----------LPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRL 441 (857)
T ss_pred HHHHHhhccccCCC----------CChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 33334444444443 44444333322111111110000000 0 000
Q ss_pred ccccch-------hh---hhhhHHH-------HHHHhhhh-------------------------------h--------
Q 003253 479 VLSCES-------IQ---YGIGIFQ-------AIQNESKS-------------------------------L-------- 502 (836)
Q Consensus 479 ~i~~~~-------~~---~~~~~~~-------~i~~~~~~-------------------------------~-------- 502 (836)
....+. +. ..+...+ ....+... +
T Consensus 442 ~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (857)
T PRK10865 442 DMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEG 521 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhc
Confidence 000000 00 0000000 00000000 0
Q ss_pred --hccccccCCHHHHHHHHhcCcCCCCCCcccc--------------hhhhchHHHHHHHHHHHhccccChhhhhcCCCC
Q 003253 503 --KKSLKDVVTENEFEKRLLADVIPPSDIGVTF--------------DDIGALENVKDTLKELVMLPLQRPELFCKGQLT 566 (836)
Q Consensus 503 --~~~~~~~v~~~d~~~~l~~~ii~~~~~~~~~--------------~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~ 566 (836)
.......++.+++.. +++.+..++.....- ..++|++.+.+.+...+...... -....
T Consensus 522 ~~~~~~~~~v~~~~i~~-vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~g-----l~~~~ 595 (857)
T PRK10865 522 KTMRLLRNKVTDAEIAE-VLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAG-----LSDPN 595 (857)
T ss_pred cccccccCccCHHHHHH-HHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhc-----ccCCC
Confidence 000012355555544 445555544333222 23678877777777776531100 00113
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch-----hcccccHHHH-----HHHHHHHHhcCCceEE
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIF 633 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s-----~~~g~~e~~i-----~~lf~~A~~~~psIL~ 633 (836)
+|...+||+||+|||||++|++||..+ +.+++.++|+++.. ..+|.+.+++ ..+....+..+.+||+
T Consensus 596 ~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLl 675 (857)
T PRK10865 596 RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVIL 675 (857)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEE
Confidence 455679999999999999999999987 56799999987633 2334332222 1233444555669999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc-------ccCcccEEEEeccCCC----------------------
Q 003253 634 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRP---------------------- 684 (836)
Q Consensus 634 IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~-------~~~~~~vlVIaTTn~~---------------------- 684 (836)
||||+.+ ++ .+.+.|+..++... ..+-.+.+||+|||..
T Consensus 676 lDEieka-----~~-------~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~ 743 (857)
T PRK10865 676 LDEVEKA-----HP-------DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLG 743 (857)
T ss_pred EeehhhC-----CH-------HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHH
Confidence 9999977 22 23344444443221 1122556789999862
Q ss_pred ---CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC-------CCCCccc---HHHHHHHcCCCc----HHHHHHHH
Q 003253 685 ---FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DLSPDVD---FDAIANMTDGYS----GSDLKNLC 747 (836)
Q Consensus 685 ---~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~-------~l~~d~d---l~~LA~~t~G~s----g~DL~~L~ 747 (836)
..+.|++++|++.++.|.+++.++..+|++.++... ++.-.++ ++.|+.. ||+ .+.|+.++
T Consensus 744 ~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~--gy~~~~GARpL~r~I 821 (857)
T PRK10865 744 VVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSEN--GYDPVYGARPLKRAI 821 (857)
T ss_pred HHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHc--CCCccCChHHHHHHH
Confidence 135678999999999999999999999998877542 2221222 3444432 443 45666666
Q ss_pred HHHHHHHHH
Q 003253 748 VTAAHRPIK 756 (836)
Q Consensus 748 ~~A~~~air 756 (836)
+.-...++.
T Consensus 822 ~~~i~~~la 830 (857)
T PRK10865 822 QQQIENPLA 830 (857)
T ss_pred HHHHHHHHH
Confidence 555554443
No 48
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.95 E-value=4.6e-26 Score=279.64 Aligned_cols=424 Identities=17% Similarity=0.236 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhc-----cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLF 347 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~-----~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~ 347 (836)
...+..+++.+.. ...|+||||||||.+++ ++.+..+.|+++|. .|.|.|||+||..+++
T Consensus 251 e~~l~~~l~~~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaTt~~e~r----------- 315 (852)
T TIGR03346 251 EERLKAVLNEVTK--SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGATTLDEYR----------- 315 (852)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeCcHHHHH-----------
Confidence 4555666666543 14799999999999875 34567899999985 5899999999988742
Q ss_pred cccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH--hhhhhhhccCCchhH
Q 003253 348 TKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD--RDSETLKMKGNLNHL 425 (836)
Q Consensus 348 ~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~--e~~~~~~~~~n~~~i 425 (836)
.+.+.|.++.+|| +.|.|++|+.++++.||+.... +.++.+.+.+.....
T Consensus 316 ---------------------------~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~ 367 (852)
T TIGR03346 316 ---------------------------KYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVA 367 (852)
T ss_pred ---------------------------HHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHH
Confidence 2235688899999 6899999999999999995433 344455544444344
Q ss_pred HHHhhccCCCcCchhhhhhhccccchHHH-----------HHHHHH--HH---HHHhhcCCCCCCCcccc---cccchhh
Q 003253 426 RTVLGRSGLECEGLETLCIRDQSLTNESA-----------EKIVGW--AL---SHHLMQNPEADPDARLV---LSCESIQ 486 (836)
Q Consensus 426 ~~~l~t~g~s~~DL~~Lc~~~~~~s~~~i-----------e~IV~~--A~---s~~l~~~~d~~~~~~~~---i~~~~~~ 486 (836)
...+...++...-|+..+++-..-.++.+ +.+-.. .+ ...+.+..+.....+.. .....+.
T Consensus 368 ~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (852)
T TIGR03346 368 AATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELE 447 (852)
T ss_pred HHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 44555566666666655443333222111 000000 00 00000000000000000 0000000
Q ss_pred hhhhHHH------------------HHHH-------h--------------------hhhh---h---------cccccc
Q 003253 487 YGIGIFQ------------------AIQN-------E--------------------SKSL---K---------KSLKDV 509 (836)
Q Consensus 487 ~~~~~~~------------------~i~~-------~--------------------~~~~---~---------~~~~~~ 509 (836)
.....+. .+.. . .+.. . ......
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 527 (852)
T TIGR03346 448 EEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREE 527 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCC
Confidence 0000000 0000 0 0000 0 001123
Q ss_pred CCHHHHHHHHhcCcCCCCCCcccc--------------hhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEE
Q 003253 510 VTENEFEKRLLADVIPPSDIGVTF--------------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLF 575 (836)
Q Consensus 510 v~~~d~~~~l~~~ii~~~~~~~~~--------------~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~ 575 (836)
++.+++.. ++..+...+.....- ..++|++.+.+.+...+...... -....+|...+||+
T Consensus 528 v~~~~i~~-v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g-----l~~~~~p~~~~Lf~ 601 (852)
T TIGR03346 528 VTAEEIAE-VVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG-----LSDPNRPIGSFLFL 601 (852)
T ss_pred cCHHHHHH-HHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcc-----CCCCCCCCeEEEEE
Confidence 55566554 445544433322221 33677777777777666521000 00123566789999
Q ss_pred cCCCChHHHHHHHHHHHh---CCCcceeeccccch-----hcccccHHHH-----HHHHHHHHhcCCceEEEccchhhhc
Q 003253 576 GPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLG 642 (836)
Q Consensus 576 GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s-----~~~g~~e~~i-----~~lf~~A~~~~psIL~IDEID~L~~ 642 (836)
||+|||||++|++||..+ +.+++.++|+++.. .++|.+.+++ ..+....++.+.+||+||||+.+
T Consensus 602 Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-- 679 (852)
T TIGR03346 602 GPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-- 679 (852)
T ss_pred cCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC--
Confidence 999999999999999988 57899999987633 3334333322 33555566777789999999977
Q ss_pred CCCCCchHHHHHHHHHHHHHHhcCCccc-------CcccEEEEeccCCCC-------------------------CCcHH
Q 003253 643 RRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF-------------------------DLDEA 690 (836)
Q Consensus 643 ~r~~~~~~~~~~~il~~ll~~ld~~~~~-------~~~~vlVIaTTn~~~-------------------------~Ld~~ 690 (836)
+ ..+.+.|+..++..... +-.+.+||+|||... .+.|+
T Consensus 680 ---~-------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pe 749 (852)
T TIGR03346 680 ---H-------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPE 749 (852)
T ss_pred ---C-------HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHH
Confidence 2 23344444444332211 125678999999722 14578
Q ss_pred HHhhccccccCCCCCHHHHHHHHHHHHhh-------CCCC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHH
Q 003253 691 VIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLS---PDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIKE 757 (836)
Q Consensus 691 l~rRf~~~I~v~~P~~~eR~~Il~~~l~~-------~~l~---~d~dl~~LA~~t~--G~sg~DL~~L~~~A~~~air~ 757 (836)
++.|++.++.|.+++.++..+|+...+.. .++. .+...+.|+...- .+..+.|+++++.....++.+
T Consensus 750 l~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 750 FLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 88899999999999999999998887752 1222 2333556666532 566788888888888776654
No 49
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.3e-27 Score=268.87 Aligned_cols=228 Identities=22% Similarity=0.320 Sum_probs=195.2
Q ss_pred HHHHHHHHHcccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHH
Q 003253 5 CAVFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLA 84 (836)
Q Consensus 5 ~~~~~~~~~~~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~ 84 (836)
-...++++-..|=-|+=-+|+||+++++ |.+|..+.+..-.+|+||++ |+++|..-| +||||||||| +++.||
T Consensus 650 ls~~~~~fs~aiGAPKIPnV~WdDVGGL--eevK~eIldTIqlPL~hpeL--fssglrkRS-GILLYGPPGT--GKTLlA 722 (953)
T KOG0736|consen 650 LSRLQKEFSDAIGAPKIPNVSWDDVGGL--EEVKTEILDTIQLPLKHPEL--FSSGLRKRS-GILLYGPPGT--GKTLLA 722 (953)
T ss_pred HHHHHHhhhhhcCCCCCCccchhcccCH--HHHHHHHHHHhcCcccChhh--hhccccccc-eeEEECCCCC--chHHHH
Confidence 3456778888899999999999999999 99999999999999999999 788887655 4999999999 999999
Q ss_pred HHHHhHhCCeEEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 003253 85 KALAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQ 164 (836)
Q Consensus 85 kala~~~~~~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (836)
||.|.+|...||.|..-.|..
T Consensus 723 KAVATEcsL~FlSVKGPELLN----------------------------------------------------------- 743 (953)
T KOG0736|consen 723 KAVATECSLNFLSVKGPELLN----------------------------------------------------------- 743 (953)
T ss_pred HHHHhhceeeEEeecCHHHHH-----------------------------------------------------------
Confidence 999999999999988533333
Q ss_pred CCccccccccccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCC
Q 003253 165 PKMETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDL 244 (836)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l 244 (836)
.|||.
T Consensus 744 --------------------------MYVGq------------------------------------------------- 748 (953)
T KOG0736|consen 744 --------------------------MYVGQ------------------------------------------------- 748 (953)
T ss_pred --------------------------HHhcc-------------------------------------------------
Confidence 78887
Q ss_pred CCCCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc------cCcchhhHHHHHH-
Q 003253 245 GGQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRL- 317 (836)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~------~~~~~~~~l~~~l- 317 (836)
.+.-++.+||.|++ ..||||||||+|++.- ++-.+++.+.++|
T Consensus 749 ---------------------------SE~NVR~VFerAR~---A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLL 798 (953)
T KOG0736|consen 749 ---------------------------SEENVREVFERARS---AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLL 798 (953)
T ss_pred ---------------------------hHHHHHHHHHHhhc---cCCeEEEeccccccCccCCCCCCccccHHHHHHHHH
Confidence 47788999999999 9999999999998442 4445555555555
Q ss_pred ---hcCC----CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCce
Q 003253 318 ---EKLP----DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNK 390 (836)
Q Consensus 318 ---~~l~----g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ 390 (836)
++++ ..|.||||||||| |||+|++|||| |..=
T Consensus 799 AELDgls~~~s~~VFViGATNRPD----------------------LLDpALLRPGR-------------------FDKL 837 (953)
T KOG0736|consen 799 AELDGLSDSSSQDVFVIGATNRPD----------------------LLDPALLRPGR-------------------FDKL 837 (953)
T ss_pred HHhhcccCCCCCceEEEecCCCcc----------------------ccChhhcCCCc-------------------ccee
Confidence 5554 4899999999999 99999999999 9999
Q ss_pred EEecCCChH-HHHHHHHHhhHhhhhhhhccCCchhHHHHhhc-cCCCcCchhhhhhhccc
Q 003253 391 VTIHMPQDE-ALLASWKHQLDRDSETLKMKGNLNHLRTVLGR-SGLECEGLETLCIRDQS 448 (836)
Q Consensus 391 ieI~lP~~e-~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t-~g~s~~DL~~Lc~~~~~ 448 (836)
++++++++. .++.+|+.++ ++.+++.+++..+.+..- .+|+|+||-+||.+|.+
T Consensus 838 vyvG~~~d~esk~~vL~AlT----rkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l 893 (953)
T KOG0736|consen 838 VYVGPNEDAESKLRVLEALT----RKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAML 893 (953)
T ss_pred EEecCCccHHHHHHHHHHHH----HHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHH
Confidence 999999765 7888999877 678899999888776555 67999999999998888
No 50
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-27 Score=261.33 Aligned_cols=263 Identities=28% Similarity=0.443 Sum_probs=214.1
Q ss_pred ccchh--hhchHHHHHH-HHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-Ccceeeccccc
Q 003253 531 VTFDD--IGALENVKDT-LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSIT 606 (836)
Q Consensus 531 ~~~~d--i~G~~~vk~~-L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~-~~i~v~~s~l~ 606 (836)
-.|++ |+|++.-... .++......-.|+...+.+. +..+|+|||||||||||.+||.|.+-+++ +---|+.+++.
T Consensus 216 f~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi-~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL 294 (744)
T KOG0741|consen 216 FNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGI-KHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL 294 (744)
T ss_pred CChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCc-cceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH
Confidence 44555 7888765544 45555555666777777664 45689999999999999999999999965 44557899999
Q ss_pred hhcccccHHHHHHHHHHHHhc--------CCceEEEccchhhhcCCCCCch-HHHHHHHHHHHHHHhcCCcccCcccEEE
Q 003253 607 SKWFGEGEKYVKAVFSLASKI--------APSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILV 677 (836)
Q Consensus 607 s~~~g~~e~~i~~lf~~A~~~--------~psIL~IDEID~L~~~r~~~~~-~~~~~~il~~ll~~ld~~~~~~~~~vlV 677 (836)
++|+|++|.+++.+|.+|..- .-.||++||||.+|.+|.+... ......+.++|+..+||...- .+++|
T Consensus 295 ~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNILV 372 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNILV 372 (744)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEEE
Confidence 999999999999999988532 2359999999999988876543 556778999999999998643 68999
Q ss_pred EeccCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhC----CCCCcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 678 LAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE----DLSPDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 678 IaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~----~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
|+-||+++.+|++++| ||...+++.+|+..-|.+|++.+.+++ .+..++|+++||.+|..|||++|..++..|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999887654 3568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 003253 752 HRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 807 (836)
Q Consensus 752 ~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~ 807 (836)
..|+-|++........ . ....+...|+++||..|++.++|++-..
T Consensus 453 S~A~nR~vk~~~~~~~--------~---~~~~e~lkV~r~DFl~aL~dVkPAFG~s 497 (744)
T KOG0741|consen 453 SFAMNRHVKAGGKVEV--------D---PVAIENLKVTRGDFLNALEDVKPAFGIS 497 (744)
T ss_pred HHHHHhhhccCcceec--------C---chhhhheeecHHHHHHHHHhcCcccCCC
Confidence 9999887664421110 0 0112345799999999999999998644
No 51
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.94 E-value=1.1e-25 Score=243.31 Aligned_cols=189 Identities=20% Similarity=0.264 Sum_probs=157.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHh-----cCCceEEEccchhh
Q 003253 566 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPSVIFVDEVDSM 640 (836)
Q Consensus 566 ~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~-----~~psIL~IDEID~L 640 (836)
.++|.+++||||||||||++|+++|+++|++|+.++.+++.++|.|++|+.++.+|..|.. .+||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 4677999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred hcCCCCCchHHHHHHH-HHHHHHHhcCCc----------ccCcccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHH
Q 003253 641 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAP 707 (836)
Q Consensus 641 ~~~r~~~~~~~~~~~i-l~~ll~~ld~~~----------~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~ 707 (836)
++.+... ......++ ..+||.++|+.. .....+|+||+|||+|+.|+++++| ||++.+ ..|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9988633 23333444 478998888631 1335779999999999999999999 999864 589999
Q ss_pred HHHHHHHHHHhhCCCCCcccHHHHHHHcCC----CcHHHHHHHHHHHHHHHHHHH
Q 003253 708 NRAKILQVILAKEDLSPDVDFDAIANMTDG----YSGSDLKNLCVTAAHRPIKEI 758 (836)
Q Consensus 708 eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G----~sg~DL~~L~~~A~~~air~~ 758 (836)
+|.+||+.++++.++. ..++..|+..+.| |.|+--..+...+....+.+.
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999988765 5788888888876 556555566666666655554
No 52
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.6e-25 Score=228.10 Aligned_cols=223 Identities=19% Similarity=0.294 Sum_probs=178.8
Q ss_pred HHHHHHHcccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHH
Q 003253 7 VFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKA 86 (836)
Q Consensus 7 ~~~~~~~~~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~ka 86 (836)
.++..|...|| -+.-+|-|++.-++ |..|..|.||++.+.|.|.++... ....++|||+||||| ++-.||||
T Consensus 114 KLr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPqlFtGk---R~PwrgiLLyGPPGT--GKSYLAKA 185 (439)
T KOG0739|consen 114 KLRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQLFTGK---RKPWRGILLYGPPGT--GKSYLAKA 185 (439)
T ss_pred HHHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhhhcCC---CCcceeEEEeCCCCC--cHHHHHHH
Confidence 34455555555 47789999999999 999999999999999999995432 245789999999999 99999999
Q ss_pred HHhHhCCeEEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003253 87 LAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPK 166 (836)
Q Consensus 87 la~~~~~~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (836)
.|.+.+..|..|.||+|..
T Consensus 186 VATEAnSTFFSvSSSDLvS------------------------------------------------------------- 204 (439)
T KOG0739|consen 186 VATEANSTFFSVSSSDLVS------------------------------------------------------------- 204 (439)
T ss_pred HHhhcCCceEEeehHHHHH-------------------------------------------------------------
Confidence 9999988888777655544
Q ss_pred ccccccccccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCC
Q 003253 167 METDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGG 246 (836)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~ 246 (836)
||.|+
T Consensus 205 ------------------------KWmGE--------------------------------------------------- 209 (439)
T KOG0739|consen 205 ------------------------KWMGE--------------------------------------------------- 209 (439)
T ss_pred ------------------------HHhcc---------------------------------------------------
Confidence 55554
Q ss_pred CCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc-----cCcchhhHHHHHHh-cC
Q 003253 247 QCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLE-KL 320 (836)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~-----~~~~~~~~l~~~l~-~l 320 (836)
.++++..||+++.+ ..|.||||||||. ++ +-.+....+++.|. +.
T Consensus 210 -------------------------SEkLVknLFemARe---~kPSIIFiDEiDs-lcg~r~enEseasRRIKTEfLVQM 260 (439)
T KOG0739|consen 210 -------------------------SEKLVKNLFEMARE---NKPSIIFIDEIDS-LCGSRSENESEASRRIKTEFLVQM 260 (439)
T ss_pred -------------------------HHHHHHHHHHHHHh---cCCcEEEeehhhh-hccCCCCCchHHHHHHHHHHHHhh
Confidence 79999999999999 9999999999995 66 33666777777661 11
Q ss_pred ------CCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEec
Q 003253 321 ------PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIH 394 (836)
Q Consensus 321 ------~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~ 394 (836)
+..|+|+|+||.+- -+|.+|+|||+.+|+|+
T Consensus 261 qGVG~d~~gvLVLgATNiPw-------------------------------------------~LDsAIRRRFekRIYIP 297 (439)
T KOG0739|consen 261 QGVGNDNDGVLVLGATNIPW-------------------------------------------VLDSAIRRRFEKRIYIP 297 (439)
T ss_pred hccccCCCceEEEecCCCch-------------------------------------------hHHHHHHHHhhcceecc
Confidence 34899999999885 45788999999999999
Q ss_pred CCChHHHHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 395 MPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 395 lP~~e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
||+..+|...++.|+..-.+.+.- .+.-...-.|.||+|+|+.-+.+++.+
T Consensus 298 LPe~~AR~~MF~lhlG~tp~~LT~---~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 298 LPEAHARARMFKLHLGDTPHVLTE---QDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred CCcHHHhhhhheeccCCCccccch---hhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 999999999999998654433322 234456778899999999866665555
No 53
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.5e-25 Score=241.67 Aligned_cols=220 Identities=22% Similarity=0.312 Sum_probs=181.6
Q ss_pred cccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 21 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 21 ~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
.=+|.|++||+. +..|..|.+++.+++-.++++. +|.+..+.+||.||||| .++||+||+|-+.+|.|..+-+
T Consensus 147 ~~~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~F~---glr~p~rglLLfGPpgt--GKtmL~~aiAsE~~atff~iSa 219 (428)
T KOG0740|consen 147 LRNVGWDDIAGL--EDAKQSLKEAVILPLLRPDLFL---GLREPVRGLLLFGPPGT--GKTMLAKAIATESGATFFNISA 219 (428)
T ss_pred CCcccccCCcch--hhHHHHhhhhhhhcccchHhhh---ccccccchhheecCCCC--chHHHHHHHHhhhcceEeeccH
Confidence 346889999999 9999999999999999999843 69999999999999999 9999999999999999999888
Q ss_pred cccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 003253 101 HSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSK 180 (836)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (836)
+.|++
T Consensus 220 ssLts--------------------------------------------------------------------------- 224 (428)
T KOG0740|consen 220 SSLTS--------------------------------------------------------------------------- 224 (428)
T ss_pred HHhhh---------------------------------------------------------------------------
Confidence 77776
Q ss_pred ccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccccc
Q 003253 181 NHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTD 260 (836)
Q Consensus 181 ~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~ 260 (836)
||+|.
T Consensus 225 ----------K~~Ge----------------------------------------------------------------- 229 (428)
T KOG0740|consen 225 ----------KYVGE----------------------------------------------------------------- 229 (428)
T ss_pred ----------hccCh-----------------------------------------------------------------
Confidence 77777
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC----cchhhHHHHHH--------hcCCCcEEEEe
Q 003253 261 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYSTFKSRL--------EKLPDKVIVIG 328 (836)
Q Consensus 261 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~----~~~~~~l~~~l--------~~l~g~v~vIg 328 (836)
..++|++||+||+. .||.||||||||++|..+ .+..-.++.++ ..-..+|+|||
T Consensus 230 -----------~eK~vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvig 295 (428)
T KOG0740|consen 230 -----------SEKLVRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIG 295 (428)
T ss_pred -----------HHHHHHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEe
Confidence 58999999999999 999999999999999722 22222222222 23345999999
Q ss_pred eeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHh
Q 003253 329 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 408 (836)
Q Consensus 329 s~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~ 408 (836)
+||++. ++|+++.|||...++|++|+.++|..+|+..
T Consensus 296 aTN~P~-------------------------------------------e~Dea~~Rrf~kr~yiplPd~etr~~~~~~l 332 (428)
T KOG0740|consen 296 ATNRPW-------------------------------------------ELDEAARRRFVKRLYIPLPDYETRSLLWKQL 332 (428)
T ss_pred cCCCch-------------------------------------------HHHHHHHHHhhceeeecCCCHHHHHHHHHHH
Confidence 999996 7899999999999999999999999999988
Q ss_pred hHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHH
Q 003253 409 LDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKI 457 (836)
Q Consensus 409 l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~I 457 (836)
|.+. .+. -.+.+...++-.|.||++.|+.++|.++++-....+...
T Consensus 333 l~~~-~~~--l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~ 378 (428)
T KOG0740|consen 333 LKEQ-PNG--LSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT 378 (428)
T ss_pred HHhC-CCC--ccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc
Confidence 8664 111 122345556777889999999999999999665555443
No 54
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.3e-24 Score=251.25 Aligned_cols=229 Identities=20% Similarity=0.252 Sum_probs=182.0
Q ss_pred HHHHHHHcc----cCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHH
Q 003253 7 VFREDILAG----ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEM 82 (836)
Q Consensus 7 ~~~~~~~~~----v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~ 82 (836)
-|++.+.+- .+.-.+-.|+|++++.+ +..|..|.+++-.++++++. |..-....+++|||+||||| .++|
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~~v~~~diggl--~~~k~~l~e~v~~~~~~~e~--~~~~~~~~~~giLl~GpPGt--GKT~ 291 (494)
T COG0464 218 DFEEALKKVLPSRGVLFEDEDVTLDDIGGL--EEAKEELKEAIETPLKRPEL--FRKLGLRPPKGVLLYGPPGT--GKTL 291 (494)
T ss_pred HHHHHHHhcCcccccccCCCCcceehhhcH--HHHHHHHHHHHHhHhhChHH--HHhcCCCCCCeeEEECCCCC--CHHH
Confidence 344444442 44567788999999998 99999999999999999998 44434455669999999999 9999
Q ss_pred HHHHHHhHhCCeEEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 003253 83 LAKALAHYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPE 162 (836)
Q Consensus 83 l~kala~~~~~~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (836)
||||+|++.+++|+.++.+++.+
T Consensus 292 lAkava~~~~~~fi~v~~~~l~s--------------------------------------------------------- 314 (494)
T COG0464 292 LAKAVALESRSRFISVKGSELLS--------------------------------------------------------- 314 (494)
T ss_pred HHHHHHhhCCCeEEEeeCHHHhc---------------------------------------------------------
Confidence 99999999999999999865555
Q ss_pred CCCCccccccccccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCC
Q 003253 163 SQPKMETDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGV 242 (836)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~ 242 (836)
||+|.
T Consensus 315 ----------------------------k~vGe----------------------------------------------- 319 (494)
T COG0464 315 ----------------------------KWVGE----------------------------------------------- 319 (494)
T ss_pred ----------------------------cccch-----------------------------------------------
Confidence 77777
Q ss_pred CCCCCCCCCcccccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc--------chhhHHH
Q 003253 243 DLGGQCEGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFK 314 (836)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~--------~~~~~l~ 314 (836)
..+.|.++|+.+.. .+|+||||||+|+++..+. ++.+.+.
T Consensus 320 -----------------------------sek~ir~~F~~A~~---~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL 367 (494)
T COG0464 320 -----------------------------SEKNIRELFEKARK---LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLL 367 (494)
T ss_pred -----------------------------HHHHHHHHHHHHHc---CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHH
Confidence 58999999999998 9999999999999887332 4566666
Q ss_pred HHHhcCC--CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEE
Q 003253 315 SRLEKLP--DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVT 392 (836)
Q Consensus 315 ~~l~~l~--g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ie 392 (836)
..|+.+. .+|+|||+||+++ .+|+|++|||| |...|.
T Consensus 368 ~~~d~~e~~~~v~vi~aTN~p~----------------------~ld~a~lR~gR-------------------fd~~i~ 406 (494)
T COG0464 368 TELDGIEKAEGVLVIAATNRPD----------------------DLDPALLRPGR-------------------FDRLIY 406 (494)
T ss_pred HHhcCCCccCceEEEecCCCcc----------------------ccCHhhcccCc-------------------cceEee
Confidence 6665443 3899999999998 69999999999 999999
Q ss_pred ecCCChHHHHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 393 IHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 393 I~lP~~e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
|++|+.++|++||+.++..... .+..+++....+-.+.|++|+||..+|.++.+
T Consensus 407 v~~pd~~~r~~i~~~~~~~~~~--~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~ 460 (494)
T COG0464 407 VPLPDLEERLEIFKIHLRDKKP--PLAEDVDLEELAEITEGYSGADIAALVREAAL 460 (494)
T ss_pred cCCCCHHHHHHHHHHHhcccCC--cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999854221 13445555445555666666666666655554
No 55
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.6e-24 Score=238.27 Aligned_cols=212 Identities=20% Similarity=0.304 Sum_probs=164.5
Q ss_pred cccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCC
Q 003253 14 AGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 93 (836)
Q Consensus 14 ~~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~ 93 (836)
..|.|-+.++|+|++.-+- |+.|..|.|-+- .||.|.- |++-=...+++|||.||||| +++|||||.|-+.||
T Consensus 291 ~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~k--ftrLGGKLPKGVLLvGPPGT--GKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 291 SEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPTK--FTRLGGKLPKGVLLVGPPGT--GKTLLARAVAGEAGV 363 (752)
T ss_pred cccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcHH--hhhccCcCCCceEEeCCCCC--chhHHHHHhhcccCC
Confidence 5677778889999999999 999999998765 4777653 66533567999999999999 999999999999999
Q ss_pred eEEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 003253 94 KLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTL 173 (836)
Q Consensus 94 ~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (836)
||.---.+. ++.
T Consensus 364 PFF~~sGSE----------------------------------FdE---------------------------------- 375 (752)
T KOG0734|consen 364 PFFYASGSE----------------------------------FDE---------------------------------- 375 (752)
T ss_pred CeEeccccc----------------------------------hhh----------------------------------
Confidence 986432111 110
Q ss_pred cccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcc
Q 003253 174 TSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHG 253 (836)
Q Consensus 174 ~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~ 253 (836)
-|||-
T Consensus 376 -----------------m~VGv---------------------------------------------------------- 380 (752)
T KOG0734|consen 376 -----------------MFVGV---------------------------------------------------------- 380 (752)
T ss_pred -----------------hhhcc----------------------------------------------------------
Confidence 45554
Q ss_pred cccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhcc--Ccch------hhHHHHHHhcC--CCc
Q 003253 254 FFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG--NSDS------YSTFKSRLEKL--PDK 323 (836)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~--~~~~------~~~l~~~l~~l--~g~ 323 (836)
..+-|+.||.-+++ ..||||||||||.+=+. ..+. .|-|...|+.. +.+
T Consensus 381 ------------------GArRVRdLF~aAk~---~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734|consen 381 ------------------GARRVRDLFAAAKA---RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred ------------------cHHHHHHHHHHHHh---cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCc
Confidence 46778999999999 99999999999984331 1222 23333444444 348
Q ss_pred EEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHH
Q 003253 324 VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLA 403 (836)
Q Consensus 324 v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~ 403 (836)
|+||||||++| -||.|+.|||| |..+|.++.||..+|.+
T Consensus 440 iIvigATNfpe----------------------~LD~AL~RPGR-------------------FD~~v~Vp~PDv~GR~e 478 (752)
T KOG0734|consen 440 IIVIGATNFPE----------------------ALDKALTRPGR-------------------FDRHVTVPLPDVRGRTE 478 (752)
T ss_pred eEEEeccCChh----------------------hhhHHhcCCCc-------------------cceeEecCCCCcccHHH
Confidence 99999999999 49999999999 99999999999999999
Q ss_pred HHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhh
Q 003253 404 SWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLET 441 (836)
Q Consensus 404 Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~ 441 (836)
||+.+| .++.+..+++....+-.|.|++|+||..
T Consensus 479 IL~~yl----~ki~~~~~VD~~iiARGT~GFsGAdLaN 512 (752)
T KOG0734|consen 479 ILKLYL----SKIPLDEDVDPKIIARGTPGFSGADLAN 512 (752)
T ss_pred HHHHHH----hcCCcccCCCHhHhccCCCCCchHHHHH
Confidence 999998 6677777776666666666655555543
No 56
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.1e-24 Score=217.22 Aligned_cols=211 Identities=20% Similarity=0.319 Sum_probs=173.1
Q ss_pred cccccccccccchhHHHHHHHHHHhccCCcccccccccc-cCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 23 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSEL-TTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 23 ~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l-~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
+-|+|-++.+ +.......+..-.+.|||++++- | -.-++++||+||||| ++..||+|.|||.+.+|+-+..+
T Consensus 143 DStYeMiGgL--d~QIkeIkEVIeLPvKHPELF~a---LGIaQPKGvlLygppgt--GktLlaraVahht~c~firvsgs 215 (404)
T KOG0728|consen 143 DSTYEMIGGL--DKQIKEIKEVIELPVKHPELFEA---LGIAQPKGVLLYGPPGT--GKTLLARAVAHHTDCTFIRVSGS 215 (404)
T ss_pred ccHHHHhccH--HHHHHHHHHHHhccccCHHHHHh---cCCCCCcceEEecCCCC--chhHHHHHHHhhcceEEEEechH
Confidence 3467888887 77777789999999999999642 3 345899999999999 99999999999999999877542
Q ss_pred ccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 003253 102 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 181 (836)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (836)
. |.+
T Consensus 216 e----------------------------------lvq------------------------------------------ 219 (404)
T KOG0728|consen 216 E----------------------------------LVQ------------------------------------------ 219 (404)
T ss_pred H----------------------------------HHH------------------------------------------
Confidence 2 222
Q ss_pred cccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccccc
Q 003253 182 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 261 (836)
Q Consensus 182 ~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (836)
||+|+
T Consensus 220 ---------k~ige------------------------------------------------------------------ 224 (404)
T KOG0728|consen 220 ---------KYIGE------------------------------------------------------------------ 224 (404)
T ss_pred ---------HHhhh------------------------------------------------------------------
Confidence 88888
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc--------cCcchhhHHHHHHhcCCC-----cEEEEe
Q 003253 262 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKLPD-----KVIVIG 328 (836)
Q Consensus 262 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~--------~~~~~~~~l~~~l~~l~g-----~v~vIg 328 (836)
..+.+++||=++.+ +.|.|||.||||++-. |..+.-......|.+++| ||-||-
T Consensus 225 ----------gsrmvrelfvmare---hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvim 291 (404)
T KOG0728|consen 225 ----------GSRMVRELFVMARE---HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIM 291 (404)
T ss_pred ----------hHHHHHHHHHHHHh---cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEE
Confidence 57899999999999 9999999999998443 233333333344455554 999999
Q ss_pred eeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHh
Q 003253 329 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 408 (836)
Q Consensus 329 s~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~ 408 (836)
+||+.| +||+|++|||| ...+|+|++|++++|++||++|
T Consensus 292 atnrid----------------------ild~allrpgr-------------------idrkiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 292 ATNRID----------------------ILDPALLRPGR-------------------IDRKIEFPPPNEEARLDILKIH 330 (404)
T ss_pred eccccc----------------------cccHhhcCCCc-------------------ccccccCCCCCHHHHHHHHHHh
Confidence 999998 89999999999 7789999999999999999999
Q ss_pred hHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhcccc
Q 003253 409 LDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 449 (836)
Q Consensus 409 l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~ 449 (836)
-. +..+...++....+..-+|-+|++++.+|+++-+|
T Consensus 331 sr----kmnl~rgi~l~kiaekm~gasgaevk~vcteagm~ 367 (404)
T KOG0728|consen 331 SR----KMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMY 367 (404)
T ss_pred hh----hhchhcccCHHHHHHhCCCCccchhhhhhhhhhHH
Confidence 84 44566677777778888999999999999998884
No 57
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.90 E-value=1.7e-23 Score=235.40 Aligned_cols=214 Identities=15% Similarity=0.260 Sum_probs=169.4
Q ss_pred CccccccccccccccchhHHHHHHHHHHhccCCccccc-ccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 003253 19 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAK-YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 97 (836)
Q Consensus 19 ~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~-~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~ 97 (836)
-+.-+|+|+++.++ |..|..|.+++-.+|+++++.+ ++ + ..+++|||+||||| ++++||||+|++.+++++.
T Consensus 137 ~~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~G--l-~~pkgvLL~GppGT--GKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 137 SEKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQIG--I-DPPRGVLLYGPPGT--GKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred cCCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhcC--C-CCCceEEEECCCCC--CHHHHHHHHHHhcCCCEEE
Confidence 46778999999999 9999999999999999998853 32 3 45789999999999 9999999999999999888
Q ss_pred EeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 003253 98 FDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAG 177 (836)
Q Consensus 98 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (836)
+..+.+..
T Consensus 210 i~~s~l~~------------------------------------------------------------------------ 217 (398)
T PTZ00454 210 VVGSEFVQ------------------------------------------------------------------------ 217 (398)
T ss_pred EehHHHHH------------------------------------------------------------------------
Confidence 76433222
Q ss_pred cccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccc
Q 003253 178 TSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCN 257 (836)
Q Consensus 178 ~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~ 257 (836)
+|+|.
T Consensus 218 -------------k~~ge-------------------------------------------------------------- 222 (398)
T PTZ00454 218 -------------KYLGE-------------------------------------------------------------- 222 (398)
T ss_pred -------------Hhcch--------------------------------------------------------------
Confidence 34443
Q ss_pred cccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC--------cchhhHHHHH---HhcC--CCcE
Q 003253 258 VTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSR---LEKL--PDKV 324 (836)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~--------~~~~~~l~~~---l~~l--~g~v 324 (836)
....++.+|+.+.. .+|+||||||||.++..+ .+....+... |+.. .++|
T Consensus 223 --------------~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 223 --------------GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred --------------hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 35568889999988 999999999999976422 1122223333 3332 2489
Q ss_pred EEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHH
Q 003253 325 IVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLAS 404 (836)
Q Consensus 325 ~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~I 404 (836)
+|||+||+++ .+|+|++|||| |..+|+|++|+.++|..|
T Consensus 286 ~VI~aTN~~d----------------------~LDpAllR~GR-------------------fd~~I~~~~P~~~~R~~I 324 (398)
T PTZ00454 286 KVIMATNRAD----------------------TLDPALLRPGR-------------------LDRKIEFPLPDRRQKRLI 324 (398)
T ss_pred EEEEecCCch----------------------hCCHHHcCCCc-------------------ccEEEEeCCcCHHHHHHH
Confidence 9999999998 59999999999 999999999999999999
Q ss_pred HHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 405 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 405 lk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
|+.++.+ ..+..+++....+..+.|++|+||..+|.++.+
T Consensus 325 l~~~~~~----~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~ 364 (398)
T PTZ00454 325 FQTITSK----MNLSEEVDLEDFVSRPEKISAADIAAICQEAGM 364 (398)
T ss_pred HHHHHhc----CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9988743 445666777777778888888888888776665
No 58
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.89 E-value=4.7e-23 Score=236.53 Aligned_cols=221 Identities=21% Similarity=0.277 Sum_probs=164.1
Q ss_pred ccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 003253 15 GILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 94 (836)
Q Consensus 15 ~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ 94 (836)
.++.-...+++|+++.++ ++.|..|....-.+.. ....|+ + +.+++|||+||||| ++++||||+|++++++
T Consensus 216 ~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpGT--GKTllAkaiA~e~~~~ 286 (489)
T CHL00195 216 EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQGT--GKSLTAKAIANDWQLP 286 (489)
T ss_pred ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCCC--cHHHHHHHHHHHhCCC
Confidence 455656678999999999 9999999875432221 112343 3 56799999999999 9999999999999999
Q ss_pred EEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 003253 95 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 174 (836)
Q Consensus 95 ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (836)
|+.+|.+.+.+
T Consensus 287 ~~~l~~~~l~~--------------------------------------------------------------------- 297 (489)
T CHL00195 287 LLRLDVGKLFG--------------------------------------------------------------------- 297 (489)
T ss_pred EEEEEhHHhcc---------------------------------------------------------------------
Confidence 99999866655
Q ss_pred ccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccc
Q 003253 175 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 254 (836)
Q Consensus 175 ~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~ 254 (836)
+|+|.
T Consensus 298 ----------------~~vGe----------------------------------------------------------- 302 (489)
T CHL00195 298 ----------------GIVGE----------------------------------------------------------- 302 (489)
T ss_pred ----------------cccCh-----------------------------------------------------------
Confidence 45554
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc---------chhhHHHHHHhcCCCcEE
Q 003253 255 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS---------DSYSTFKSRLEKLPDKVI 325 (836)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~---------~~~~~l~~~l~~l~g~v~ 325 (836)
....++++|+.+.. .+||||||||||+++.+.. ++...+...|+....+|+
T Consensus 303 -----------------se~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~ 362 (489)
T CHL00195 303 -----------------SESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVF 362 (489)
T ss_pred -----------------HHHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceE
Confidence 35678899999988 8999999999999876321 122333334444467899
Q ss_pred EEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHH
Q 003253 326 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 405 (836)
Q Consensus 326 vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Il 405 (836)
|||+||+++ .||+|++|||| |...|+|++|+.++|.+||
T Consensus 363 vIaTTN~~~----------------------~Ld~allR~GR-------------------FD~~i~v~lP~~~eR~~Il 401 (489)
T CHL00195 363 VVATANNID----------------------LLPLEILRKGR-------------------FDEIFFLDLPSLEEREKIF 401 (489)
T ss_pred EEEecCChh----------------------hCCHHHhCCCc-------------------CCeEEEeCCcCHHHHHHHH
Confidence 999999997 59999999999 9999999999999999999
Q ss_pred HHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHh
Q 003253 406 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHL 466 (836)
Q Consensus 406 k~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l 466 (836)
+.++.+.... .....|+..|+..+..|||++|+.+|..|...++
T Consensus 402 ~~~l~~~~~~-----------------~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~ 445 (489)
T CHL00195 402 KIHLQKFRPK-----------------SWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAF 445 (489)
T ss_pred HHHHhhcCCC-----------------cccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 9998552211 1122345555555556666666666666665554
No 59
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.1e-24 Score=220.45 Aligned_cols=211 Identities=19% Similarity=0.306 Sum_probs=175.5
Q ss_pred cccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccc
Q 003253 23 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 102 (836)
Q Consensus 23 ~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~ 102 (836)
..||.+++++ |+..+.+.+++-.+|.||++ |-.-=-.+++++.|||+||| .++.||||.|+...|.||-+=.|.
T Consensus 181 ~Ety~diGGl--e~QiQEiKEsvELPLthPE~--YeemGikpPKGVIlyG~PGT--GKTLLAKAVANqTSATFlRvvGse 254 (440)
T KOG0726|consen 181 QETYADIGGL--ESQIQEIKESVELPLTHPEY--YEEMGIKPPKGVILYGEPGT--GKTLLAKAVANQTSATFLRVVGSE 254 (440)
T ss_pred hhhhcccccH--HHHHHHHHHhhcCCCCCHHH--HHHcCCCCCCeeEEeCCCCC--chhHHHHHHhcccchhhhhhhhHH
Confidence 4689999999 99999999999999999999 43323456899999999999 999999999999999887554322
Q ss_pred cCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 003253 103 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 182 (836)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (836)
|.+
T Consensus 255 ----------------------------------LiQ------------------------------------------- 257 (440)
T KOG0726|consen 255 ----------------------------------LIQ------------------------------------------- 257 (440)
T ss_pred ----------------------------------HHH-------------------------------------------
Confidence 222
Q ss_pred ccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccccccc
Q 003253 183 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 262 (836)
Q Consensus 183 ~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 262 (836)
||.|+
T Consensus 258 --------kylGd------------------------------------------------------------------- 262 (440)
T KOG0726|consen 258 --------KYLGD------------------------------------------------------------------- 262 (440)
T ss_pred --------HHhcc-------------------------------------------------------------------
Confidence 77776
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc--------cCcchhhHHHHHHhcCC-----CcEEEEee
Q 003253 263 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKLP-----DKVIVIGS 329 (836)
Q Consensus 263 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~--------~~~~~~~~l~~~l~~l~-----g~v~vIgs 329 (836)
.-+++++||.++.. ..|.|+||||||.+=. |..++-......|.+++ |-|-||-|
T Consensus 263 ---------GpklvRqlF~vA~e---~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimA 330 (440)
T KOG0726|consen 263 ---------GPKLVRELFRVAEE---HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 330 (440)
T ss_pred ---------chHHHHHHHHHHHh---cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEe
Confidence 47899999999999 9999999999998443 33444444444444443 58999999
Q ss_pred eccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhh
Q 003253 330 HTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 330 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l 409 (836)
||+.+ -||||+-|||| ...+|++++||+..+.+|+.+|+
T Consensus 331 Tnrie----------------------~LDPaLiRPGr-------------------IDrKIef~~pDe~TkkkIf~IHT 369 (440)
T KOG0726|consen 331 TNRIE----------------------TLDPALIRPGR-------------------IDRKIEFPLPDEKTKKKIFQIHT 369 (440)
T ss_pred ccccc----------------------ccCHhhcCCCc-------------------cccccccCCCchhhhceeEEEee
Confidence 99998 49999999999 77899999999999999999999
Q ss_pred HhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 410 DRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 410 ~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
.+| .+..+++....+.....+||+|++.+|+++-+
T Consensus 370 s~M----tl~~dVnle~li~~kddlSGAdIkAictEaGl 404 (440)
T KOG0726|consen 370 SRM----TLAEDVNLEELIMTKDDLSGADIKAICTEAGL 404 (440)
T ss_pred ccc----chhccccHHHHhhcccccccccHHHHHHHHhH
Confidence 554 47888888888888889999999999998877
No 60
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5e-23 Score=208.68 Aligned_cols=215 Identities=17% Similarity=0.269 Sum_probs=169.7
Q ss_pred CccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 003253 19 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 98 (836)
Q Consensus 19 ~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~ 98 (836)
-+.-+||+.++++. +-.|+...+|+-.+|.|.++.+.. .+ ..++++||+||||| +++|||||.||+..|.|+-+
T Consensus 147 ~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qi-gi-dpprgvllygppg~--gktml~kava~~t~a~firv 220 (408)
T KOG0727|consen 147 DEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQI-GI-DPPRGVLLYGPPGT--GKTMLAKAVANHTTAAFIRV 220 (408)
T ss_pred CCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHh-CC-CCCcceEEeCCCCC--cHHHHHHHHhhccchheeee
Confidence 35678999999999 999999999999999999996543 23 45899999999999 99999999999999999877
Q ss_pred eccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 003253 99 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 178 (836)
Q Consensus 99 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (836)
-.|.|.-
T Consensus 221 vgsefvq------------------------------------------------------------------------- 227 (408)
T KOG0727|consen 221 VGSEFVQ------------------------------------------------------------------------- 227 (408)
T ss_pred ccHHHHH-------------------------------------------------------------------------
Confidence 6433322
Q ss_pred ccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccc
Q 003253 179 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 258 (836)
Q Consensus 179 ~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~ 258 (836)
||.|+
T Consensus 228 ------------kylge--------------------------------------------------------------- 232 (408)
T KOG0727|consen 228 ------------KYLGE--------------------------------------------------------------- 232 (408)
T ss_pred ------------HHhcc---------------------------------------------------------------
Confidence 77777
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhcc----Cc----chhhHHHHHHhcCCC-----cEE
Q 003253 259 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NS----DSYSTFKSRLEKLPD-----KVI 325 (836)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~----~~----~~~~~l~~~l~~l~g-----~v~ 325 (836)
.-+.++.+|.++++ ..|.||||||||.+... ++ +.-..|-..|.+.+| ||-
T Consensus 233 -------------gprmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvk 296 (408)
T KOG0727|consen 233 -------------GPRMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVK 296 (408)
T ss_pred -------------CcHHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceE
Confidence 35678889999999 99999999999997762 22 222333333444443 999
Q ss_pred EEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHH
Q 003253 326 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 405 (836)
Q Consensus 326 vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Il 405 (836)
||-+||+.| -||||++|||| ...+|++++|+..++.-++
T Consensus 297 vimatnrad----------------------tldpallrpgr-------------------ldrkiefplpdrrqkrlvf 335 (408)
T KOG0727|consen 297 VIMATNRAD----------------------TLDPALLRPGR-------------------LDRKIEFPLPDRRQKRLVF 335 (408)
T ss_pred EEEecCccc----------------------ccCHhhcCCcc-------------------ccccccCCCCchhhhhhhH
Confidence 999999998 59999999999 7899999999999999888
Q ss_pred HHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 406 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 406 k~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
..... ++.+.++++....+..-..++|+|+..+|.++-+
T Consensus 336 ~tits----km~ls~~vdle~~v~rpdkis~adi~aicqeagm 374 (408)
T KOG0727|consen 336 STITS----KMNLSDEVDLEDLVARPDKISGADINAICQEAGM 374 (408)
T ss_pred Hhhhh----cccCCcccCHHHHhcCccccchhhHHHHHHHHhH
Confidence 87663 4456667766666666666777777776666555
No 61
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.88 E-value=1.5e-22 Score=228.47 Aligned_cols=212 Identities=21% Similarity=0.320 Sum_probs=167.9
Q ss_pred cccccccccccccchhHHHHHHHHHHhccCCccccc-ccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 21 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAK-YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 21 ~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~-~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
..+++|++++++ |+.+..|.+.+..+++++++.+ ++ -+.+++|||+||||| ++++||||+|++++++++.++
T Consensus 125 ~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppGt--GKT~lAkaia~~~~~~~i~v~ 197 (389)
T PRK03992 125 SPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPGT--GKTLLAKAVAHETNATFIRVV 197 (389)
T ss_pred CCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCCC--ChHHHHHHHHHHhCCCEEEee
Confidence 458999999999 9999999999999999998753 32 344678999999999 999999999999999999887
Q ss_pred ccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 003253 100 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 179 (836)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (836)
.+.|..
T Consensus 198 ~~~l~~-------------------------------------------------------------------------- 203 (389)
T PRK03992 198 GSELVQ-------------------------------------------------------------------------- 203 (389)
T ss_pred hHHHhH--------------------------------------------------------------------------
Confidence 654433
Q ss_pred cccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccc
Q 003253 180 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 259 (836)
Q Consensus 180 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (836)
+|+|.
T Consensus 204 -----------~~~g~---------------------------------------------------------------- 208 (389)
T PRK03992 204 -----------KFIGE---------------------------------------------------------------- 208 (389)
T ss_pred -----------hhccc----------------------------------------------------------------
Confidence 34443
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC--------cchhhHHHHHHhcCC-----CcEEE
Q 003253 260 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKLP-----DKVIV 326 (836)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~--------~~~~~~l~~~l~~l~-----g~v~v 326 (836)
....++.+|+.+.. .+|+||||||||.+...+ .+....+...|..+. ++|+|
T Consensus 209 ------------~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 209 ------------GARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred ------------hHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 35567889999988 899999999999976421 222223333332222 48999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHH
Q 003253 327 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 406 (836)
Q Consensus 327 Igs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk 406 (836)
||+||+++ .+|+|++|||| |...|+|++|+.++|.+||+
T Consensus 274 I~aTn~~~----------------------~ld~allRpgR-------------------fd~~I~v~~P~~~~R~~Il~ 312 (389)
T PRK03992 274 IAATNRID----------------------ILDPAILRPGR-------------------FDRIIEVPLPDEEGRLEILK 312 (389)
T ss_pred EEecCChh----------------------hCCHHHcCCcc-------------------CceEEEECCCCHHHHHHHHH
Confidence 99999997 69999999999 99999999999999999999
Q ss_pred HhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 407 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 407 ~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
.++ +...+..+++....+..+.|++|.||..+|.++.+
T Consensus 313 ~~~----~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~ 350 (389)
T PRK03992 313 IHT----RKMNLADDVDLEELAELTEGASGADLKAICTEAGM 350 (389)
T ss_pred HHh----ccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 887 44455666667777777888888888877776655
No 62
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.3e-22 Score=206.51 Aligned_cols=213 Identities=20% Similarity=0.333 Sum_probs=174.7
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCcccccccccc-cCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSEL-TTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 98 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l-~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~ 98 (836)
+.-..++.+++++ |...+.|++|+..+++|++-++ +| -.+++++|+|||||| ++++||+|-|.+..|.||-|
T Consensus 164 ekPtE~YsDiGGl--dkQIqELvEAiVLpmth~ekF~---~lgi~pPKGvLmYGPPGT--GKTlmARAcAaqT~aTFLKL 236 (424)
T KOG0652|consen 164 EKPTEQYSDIGGL--DKQIQELVEAIVLPMTHKEKFE---NLGIRPPKGVLMYGPPGT--GKTLMARACAAQTNATFLKL 236 (424)
T ss_pred cCCcccccccccH--HHHHHHHHHHhccccccHHHHH---hcCCCCCCceEeeCCCCC--cHHHHHHHHHHhccchHHHh
Confidence 3445678899999 9999999999999999998753 23 346899999999999 99999999999999988754
Q ss_pred eccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 003253 99 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 178 (836)
Q Consensus 99 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (836)
+|. +|.+
T Consensus 237 -----AgP-----------------------------QLVQ--------------------------------------- 243 (424)
T KOG0652|consen 237 -----AGP-----------------------------QLVQ--------------------------------------- 243 (424)
T ss_pred -----cch-----------------------------HHHh---------------------------------------
Confidence 340 1111
Q ss_pred ccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccc
Q 003253 179 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 258 (836)
Q Consensus 179 ~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~ 258 (836)
-|+|+
T Consensus 244 ------------MfIGd--------------------------------------------------------------- 248 (424)
T KOG0652|consen 244 ------------MFIGD--------------------------------------------------------------- 248 (424)
T ss_pred ------------hhhcc---------------------------------------------------------------
Confidence 45555
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc--------cCcchhhHHHHHHhcCCC-----cEE
Q 003253 259 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKLPD-----KVI 325 (836)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~--------~~~~~~~~l~~~l~~l~g-----~v~ 325 (836)
..++++.-|.++++ ..|+||||||+|.+-. |..+.-......|.+|+| .|-
T Consensus 249 -------------GAkLVRDAFaLAKE---kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vK 312 (424)
T KOG0652|consen 249 -------------GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVK 312 (424)
T ss_pred -------------hHHHHHHHHHHhhc---cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceE
Confidence 57889999999999 9999999999998543 333333333333444433 999
Q ss_pred EEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHH
Q 003253 326 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 405 (836)
Q Consensus 326 vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Il 405 (836)
||++||+.| +||||++|.|| ...+|+++.|++++|.+|+
T Consensus 313 viAATNRvD----------------------iLDPALlRSGR-------------------LDRKIEfP~Pne~aRarIl 351 (424)
T KOG0652|consen 313 VIAATNRVD----------------------ILDPALLRSGR-------------------LDRKIEFPHPNEEARARIL 351 (424)
T ss_pred EEeeccccc----------------------ccCHHHhhccc-------------------ccccccCCCCChHHHHHHH
Confidence 999999998 89999999999 7899999999999999999
Q ss_pred HHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 406 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 406 k~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
++|- .++...+++++.+.+-.|.++.|+-++.+|.++-+
T Consensus 352 QIHs----RKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGM 390 (424)
T KOG0652|consen 352 QIHS----RKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGM 390 (424)
T ss_pred HHhh----hhcCCCCCCCHHHHhhcccccCchhheeeehhhhH
Confidence 9998 45567889999999999999999999999998877
No 63
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.6e-22 Score=235.93 Aligned_cols=217 Identities=20% Similarity=0.340 Sum_probs=174.9
Q ss_pred cCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeE
Q 003253 16 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 95 (836)
Q Consensus 16 v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~l 95 (836)
+-+-.+++|+|+++-+- |..|..|.|-+- .||+|+. |.+-=.-.++++||+||||| +++.||||.|-+.||||
T Consensus 300 ~~~~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPGT--GKTLLAKAiAGEAgVPF 372 (774)
T KOG0731|consen 300 FKNEGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPGT--GKTLLAKAIAGEAGVPF 372 (774)
T ss_pred eccCCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCCC--cHHHHHHHHhcccCCce
Confidence 33467888999999999 999999999764 5999887 55433668999999999999 99999999999999999
Q ss_pred EEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 003253 96 LIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTS 175 (836)
Q Consensus 96 l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (836)
+.+-.+.|.-
T Consensus 373 ~svSGSEFvE---------------------------------------------------------------------- 382 (774)
T KOG0731|consen 373 FSVSGSEFVE---------------------------------------------------------------------- 382 (774)
T ss_pred eeechHHHHH----------------------------------------------------------------------
Confidence 9887544422
Q ss_pred cccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccc
Q 003253 176 AGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 255 (836)
Q Consensus 176 ~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~ 255 (836)
.|+|-
T Consensus 383 ---------------~~~g~------------------------------------------------------------ 387 (774)
T KOG0731|consen 383 ---------------MFVGV------------------------------------------------------------ 387 (774)
T ss_pred ---------------Hhccc------------------------------------------------------------
Confidence 22222
Q ss_pred cccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc---------cCcc---hhhHHHHHHhcC--C
Q 003253 256 CNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA---------GNSD---SYSTFKSRLEKL--P 321 (836)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~---------~~~~---~~~~l~~~l~~l--~ 321 (836)
.--.++.||..++. ..||||||||||.+-. ++++ ..|-+...||.. .
T Consensus 388 ----------------~asrvr~lf~~ar~---~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 388 ----------------GASRVRDLFPLARK---NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ----------------chHHHHHHHHHhhc---cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 23457899999999 9999999999998443 2222 334444555544 2
Q ss_pred CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHH
Q 003253 322 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 401 (836)
Q Consensus 322 g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~r 401 (836)
+.|+||||||++| .||+|++|||| |..+|.|.+|+..+|
T Consensus 449 ~~vi~~a~tnr~d----------------------~ld~allrpGR-------------------fdr~i~i~~p~~~~r 487 (774)
T KOG0731|consen 449 KGVIVLAATNRPD----------------------ILDPALLRPGR-------------------FDRQIQIDLPDVKGR 487 (774)
T ss_pred CcEEEEeccCCcc----------------------ccCHHhcCCCc-------------------cccceeccCCchhhh
Confidence 4899999999999 79999999999 999999999999999
Q ss_pred HHHHHHhhHhhhhhhhc-cCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 402 LASWKHQLDRDSETLKM-KGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 402 l~Ilk~~l~e~~~~~~~-~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
.+|++.|+ ..+++ .+++++-..+..|.|++|+||..+|-+++.
T Consensus 488 ~~i~~~h~----~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~ 531 (774)
T KOG0731|consen 488 ASILKVHL----RKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAAL 531 (774)
T ss_pred HHHHHHHh----hccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHH
Confidence 99999999 45555 466777778888999999999988887666
No 64
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-22 Score=207.31 Aligned_cols=223 Identities=15% Similarity=0.242 Sum_probs=179.6
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+.-+||+.+.++- .+...-|.+.+-.+|-||+- |..-=-..+++|||+||||| .++.+|+|.|+..+|-|+-+=
T Consensus 170 ekpdvty~dvggc--keqieklrevve~pll~per--fv~lgidppkgvllygppgt--gktl~aravanrtdacfirvi 243 (435)
T KOG0729|consen 170 EKPDVTYSDVGGC--KEQIEKLREVVELPLLHPER--FVNLGIDPPKGVLLYGPPGT--GKTLCARAVANRTDACFIRVI 243 (435)
T ss_pred cCCCcccccccch--HHHHHHHHHHHhccccCHHH--HhhcCCCCCCceEEeCCCCC--chhHHHHHHhcccCceEEeeh
Confidence 4567899999999 88889999999999999986 33212346899999999999 999999999999999998653
Q ss_pred ccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 003253 100 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 179 (836)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (836)
| ++|.+
T Consensus 244 -----g-----------------------------selvq---------------------------------------- 249 (435)
T KOG0729|consen 244 -----G-----------------------------SELVQ---------------------------------------- 249 (435)
T ss_pred -----h-----------------------------HHHHH----------------------------------------
Confidence 3 11322
Q ss_pred cccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccc
Q 003253 180 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 259 (836)
Q Consensus 180 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (836)
||||+
T Consensus 250 -----------kyvge---------------------------------------------------------------- 254 (435)
T KOG0729|consen 250 -----------KYVGE---------------------------------------------------------------- 254 (435)
T ss_pred -----------HHhhh----------------------------------------------------------------
Confidence 88888
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc----cCcchhhHHHHHH----hcC-----CCcEEE
Q 003253 260 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA----GNSDSYSTFKSRL----EKL-----PDKVIV 326 (836)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~----~~~~~~~~l~~~l----~~l-----~g~v~v 326 (836)
..+.+++||+++.. ...|||||||||.+-+ +...-.|.++..+ .+| .|||-|
T Consensus 255 ------------garmvrelf~mart---kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikv 319 (435)
T KOG0729|consen 255 ------------GARMVRELFEMART---KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKV 319 (435)
T ss_pred ------------hHHHHHHHHHHhcc---cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 68899999999999 9999999999998544 1122233443332 333 479999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHH
Q 003253 327 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 406 (836)
Q Consensus 327 Igs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk 406 (836)
+-+||++| .||||+.|||| ...++++.||+-|+|..|++
T Consensus 320 lmatnrpd----------------------tldpallrpgr-------------------ldrkvef~lpdlegrt~i~k 358 (435)
T KOG0729|consen 320 LMATNRPD----------------------TLDPALLRPGR-------------------LDRKVEFGLPDLEGRTHIFK 358 (435)
T ss_pred EeecCCCC----------------------CcCHhhcCCcc-------------------cccceeccCCcccccceeEE
Confidence 99999998 69999999999 78999999999999999999
Q ss_pred HhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHH
Q 003253 407 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKI 457 (836)
Q Consensus 407 ~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~I 457 (836)
+|. +.+....++.+...+-.-.+-.|++|.++|+++-+|.+.+=.++
T Consensus 359 iha----ksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~ 405 (435)
T KOG0729|consen 359 IHA----KSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKV 405 (435)
T ss_pred Eec----cccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhh
Confidence 998 55566777766666666778889999999999999876654444
No 65
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.87 E-value=7.6e-22 Score=223.47 Aligned_cols=211 Identities=18% Similarity=0.291 Sum_probs=166.1
Q ss_pred ccccccccccccchhHHHHHHHHHHhccCCccccc-ccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 22 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAK-YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 22 ~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~-~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
-.+||+++.++ +..+..|.+++-.+|.++++.+ ++ + ..+++|||+||||| ++++||||+|++++++++-++.
T Consensus 178 p~~~~~DIgGl--~~qi~~l~e~v~lpl~~p~~~~~~g--i-~~p~gVLL~GPPGT--GKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 178 PLESYADIGGL--EQQIQEIKEAVELPLTHPELYDDIG--I-KPPKGVILYGPPGT--GKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHhhhhCHHHHHhcC--C-CCCcEEEEECCCCC--CHHHHHHHHHHhhCCCEEEEec
Confidence 45899999999 9999999999999999999853 33 3 35678999999999 9999999999999999888875
Q ss_pred cccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 003253 101 HSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSK 180 (836)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (836)
+.|.+
T Consensus 251 seL~~--------------------------------------------------------------------------- 255 (438)
T PTZ00361 251 SELIQ--------------------------------------------------------------------------- 255 (438)
T ss_pred chhhh---------------------------------------------------------------------------
Confidence 44433
Q ss_pred ccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccccc
Q 003253 181 NHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTD 260 (836)
Q Consensus 181 ~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~ 260 (836)
+|+|.
T Consensus 256 ----------k~~Ge----------------------------------------------------------------- 260 (438)
T PTZ00361 256 ----------KYLGD----------------------------------------------------------------- 260 (438)
T ss_pred ----------hhcch-----------------------------------------------------------------
Confidence 33333
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC--------cchhhHHHHHHhcC-----CCcEEEE
Q 003253 261 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL-----PDKVIVI 327 (836)
Q Consensus 261 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~--------~~~~~~l~~~l~~l-----~g~v~vI 327 (836)
....+..+|+.+.. ..|+||||||||.++..+ .+....+...|..+ .++|.||
T Consensus 261 -----------~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI 326 (438)
T PTZ00361 261 -----------GPKLVRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVI 326 (438)
T ss_pred -----------HHHHHHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEE
Confidence 35668899999988 899999999999977522 22223333333332 3589999
Q ss_pred eeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHH
Q 003253 328 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 407 (836)
Q Consensus 328 gs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~ 407 (836)
++||+++ .+|+|++|||| |..+|+|++|+.++|.+||+.
T Consensus 327 ~ATNr~d----------------------~LDpaLlRpGR-------------------fd~~I~~~~Pd~~~R~~Il~~ 365 (438)
T PTZ00361 327 MATNRIE----------------------SLDPALIRPGR-------------------IDRKIEFPNPDEKTKRRIFEI 365 (438)
T ss_pred EecCChH----------------------HhhHHhccCCe-------------------eEEEEEeCCCCHHHHHHHHHH
Confidence 9999997 68999999999 999999999999999999998
Q ss_pred hhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 408 QLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 408 ~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
++.+ ..+..+++....+..+.|++|+||..+|..+.+
T Consensus 366 ~~~k----~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~ 402 (438)
T PTZ00361 366 HTSK----MTLAEDVDLEEFIMAKDELSGADIKAICTEAGL 402 (438)
T ss_pred HHhc----CCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 8744 345566666667777778787777777766544
No 66
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.87 E-value=2.6e-21 Score=221.90 Aligned_cols=245 Identities=20% Similarity=0.272 Sum_probs=173.5
Q ss_pred CCCccccccccccccccchhHHHHHHHHHHhccCCcccc-cccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeE
Q 003253 17 LDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 95 (836)
Q Consensus 17 ~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~-~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~l 95 (836)
+.-+.-+++|+++.++ +..+..|.+++..++.|+++. +|+ +. .+++|||+||||| ++++||||+|++++.++
T Consensus 172 ~~~~~p~v~~~dIgGl--~~~i~~i~~~v~lp~~~~~l~~~~g--l~-~p~GILLyGPPGT--GKT~LAKAlA~eL~~~i 244 (512)
T TIGR03689 172 VLEEVPDVTYADIGGL--DSQIEQIRDAVELPFLHPELYREYD--LK-PPKGVLLYGPPGC--GKTLIAKAVANSLAQRI 244 (512)
T ss_pred eeecCCCCCHHHcCCh--HHHHHHHHHHHHHHhhCHHHHHhcc--CC-CCcceEEECCCCC--cHHHHHHHHHHhhcccc
Confidence 3345568999999999 999999999999999999885 443 33 4788999999999 99999999999987654
Q ss_pred EEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 003253 96 LIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTS 175 (836)
Q Consensus 96 l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (836)
.. . .+
T Consensus 245 ~~-~----~~---------------------------------------------------------------------- 249 (512)
T TIGR03689 245 GA-E----TG---------------------------------------------------------------------- 249 (512)
T ss_pred cc-c----cC----------------------------------------------------------------------
Confidence 32 0 00
Q ss_pred cccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccc
Q 003253 176 AGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 255 (836)
Q Consensus 176 ~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~ 255 (836)
.+..|+.-
T Consensus 250 ------------~~~~fl~v------------------------------------------------------------ 257 (512)
T TIGR03689 250 ------------DKSYFLNI------------------------------------------------------------ 257 (512)
T ss_pred ------------CceeEEec------------------------------------------------------------
Confidence 00011100
Q ss_pred cccccccccCCCcchhHHHHHHHHHHHHhhc-cCCCCeEEEEcCchhhhccC-----cch----hhHHHHHHhcCC--Cc
Q 003253 256 CNVTDLRLENSGTEDLDKLLINTLFEVVFSE-SRSCPFILFMKDAEKSIAGN-----SDS----YSTFKSRLEKLP--DK 323 (836)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~~~~p~Ilfi~ei~~~l~~~-----~~~----~~~l~~~l~~l~--g~ 323 (836)
.+...+++|.++ ....++.+|+.+... +...|+||||||+|.++..+ .+. .+.|...|+.+. ++
T Consensus 258 --~~~eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 258 --KGPELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred --cchhhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 000112233344 456778888887663 23579999999999987521 222 234444455443 58
Q ss_pred EEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHH
Q 003253 324 VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLA 403 (836)
Q Consensus 324 v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~ 403 (836)
|+|||+||+++ +||+|++|||| |..+|+|++|+.++|.+
T Consensus 334 ViVI~ATN~~d----------------------~LDpALlRpGR-------------------fD~~I~~~~Pd~e~r~~ 372 (512)
T TIGR03689 334 VIVIGASNRED----------------------MIDPAILRPGR-------------------LDVKIRIERPDAEAAAD 372 (512)
T ss_pred eEEEeccCChh----------------------hCCHhhcCccc-------------------cceEEEeCCCCHHHHHH
Confidence 99999999998 69999999999 99999999999999999
Q ss_pred HHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhc-----------------------------cccchHHH
Q 003253 404 SWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRD-----------------------------QSLTNESA 454 (836)
Q Consensus 404 Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~-----------------------------~~~s~~~i 454 (836)
||+.++.. .+.+. ..+....|+.+.++..+|..+ -.+||+.|
T Consensus 373 Il~~~l~~---~l~l~------~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i 443 (512)
T TIGR03689 373 IFSKYLTD---SLPLD------ADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMI 443 (512)
T ss_pred HHHHHhhc---cCCch------HHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHH
Confidence 99988743 12221 123345788888888888774 12567777
Q ss_pred HHHHHHHHHHHhhcC
Q 003253 455 EKIVGWALSHHLMQN 469 (836)
Q Consensus 455 e~IV~~A~s~~l~~~ 469 (836)
..||..|...++...
T Consensus 444 ~~iv~~a~~~ai~~~ 458 (512)
T TIGR03689 444 ANIVDRAKKRAIKDH 458 (512)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777776666543
No 67
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.86 E-value=2.1e-21 Score=226.14 Aligned_cols=214 Identities=20% Similarity=0.311 Sum_probs=160.7
Q ss_pred cCCCccccccccccccccchhHHHHHHHHHHhccCCcccc-cccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 003253 16 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 94 (836)
Q Consensus 16 v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~-~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ 94 (836)
+...+..+++|++++.+ ++.|..|.+.+.. |++++.. +++ ...+++|||+||||| ++++||||||++.+++
T Consensus 44 ~~~~~~~~~~~~di~g~--~~~k~~l~~~~~~-l~~~~~~~~~g---~~~~~giLL~GppGt--GKT~la~alA~~~~~~ 115 (495)
T TIGR01241 44 LLNEEKPKVTFKDVAGI--DEAKEELMEIVDF-LKNPSKFTKLG---AKIPKGVLLVGPPGT--GKTLLAKAVAGEAGVP 115 (495)
T ss_pred cccCCCCCCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHhcC---CCCCCcEEEECCCCC--CHHHHHHHHHHHcCCC
Confidence 34456789999999999 9999999987765 8887753 333 345788999999999 9999999999999999
Q ss_pred EEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 003253 95 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 174 (836)
Q Consensus 95 ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (836)
++.++.+.|..
T Consensus 116 ~~~i~~~~~~~--------------------------------------------------------------------- 126 (495)
T TIGR01241 116 FFSISGSDFVE--------------------------------------------------------------------- 126 (495)
T ss_pred eeeccHHHHHH---------------------------------------------------------------------
Confidence 88877543322
Q ss_pred ccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccc
Q 003253 175 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 254 (836)
Q Consensus 175 ~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~ 254 (836)
.|+|.
T Consensus 127 ----------------~~~g~----------------------------------------------------------- 131 (495)
T TIGR01241 127 ----------------MFVGV----------------------------------------------------------- 131 (495)
T ss_pred ----------------HHhcc-----------------------------------------------------------
Confidence 12221
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc-----------chhhHHHHHHhcC--C
Q 003253 255 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----------DSYSTFKSRLEKL--P 321 (836)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~-----------~~~~~l~~~l~~l--~ 321 (836)
....++.+|+.+.. .+|+||||||||.+...+. ...+.|...|+.+ .
T Consensus 132 -----------------~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 132 -----------------GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -----------------cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 24467888999888 8999999999999764211 2223333444433 2
Q ss_pred CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHH
Q 003253 322 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 401 (836)
Q Consensus 322 g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~r 401 (836)
++|+|||+||+++ .+|+|++|||| |...|+|++|+.++|
T Consensus 192 ~~v~vI~aTn~~~----------------------~ld~al~r~gR-------------------fd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 192 TGVIVIAATNRPD----------------------VLDPALLRPGR-------------------FDRQVVVDLPDIKGR 230 (495)
T ss_pred CCeEEEEecCChh----------------------hcCHHHhcCCc-------------------ceEEEEcCCCCHHHH
Confidence 4799999999997 69999999999 999999999999999
Q ss_pred HHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhc
Q 003253 402 LASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRD 446 (836)
Q Consensus 402 l~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~ 446 (836)
.+||+.++.. ..+..+.+....+..+.|++|.||..+|.++
T Consensus 231 ~~il~~~l~~----~~~~~~~~l~~la~~t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 231 EEILKVHAKN----KKLAPDVDLKAVARRTPGFSGADLANLLNEA 271 (495)
T ss_pred HHHHHHHHhc----CCCCcchhHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999988743 3334455555666667777777777666543
No 68
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.85 E-value=2.8e-21 Score=238.86 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc-c-hhhHHHHHHhcC-----CCcEEEEeeeccCCCccccCCCCC
Q 003253 272 DKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-D-SYSTFKSRLEKL-----PDKVIVIGSHTHTDNRKEKSHPGG 344 (836)
Q Consensus 272 ~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~-~-~~~~l~~~l~~l-----~g~v~vIgs~~~~d~~~~~~~~~~ 344 (836)
...-|+.+|+.|.. .+||||||||||.+-.... . ..+.|...|+.. ..+|+||||||++|
T Consensus 1717 ~~~rIr~lFelARk---~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD---------- 1783 (2281)
T CHL00206 1717 DRFYITLQFELAKA---MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQ---------- 1783 (2281)
T ss_pred hHHHHHHHHHHHHH---CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcc----------
Confidence 45569999999999 9999999999999544222 1 256666777643 34899999999998
Q ss_pred ccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhhhhhhccCC-ch
Q 003253 345 LLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGN-LN 423 (836)
Q Consensus 345 ~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~~~~~~~~n-~~ 423 (836)
.||||++|||| |+..|+|+.|+..+|.+++++.+.- +.+.+..+ ++
T Consensus 1784 ------------~LDPALLRPGR-------------------FDR~I~Ir~Pd~p~R~kiL~ILl~t--kg~~L~~~~vd 1830 (2281)
T CHL00206 1784 ------------KVDPALIAPNK-------------------LNTCIKIRRLLIPQQRKHFFTLSYT--RGFHLEKKMFH 1830 (2281)
T ss_pred ------------cCCHhHcCCCC-------------------CCeEEEeCCCCchhHHHHHHHHHhh--cCCCCCccccc
Confidence 79999999999 9999999999999999999855411 23444433 23
Q ss_pred hHHHHhhccCCCcCchhhhhhhccc
Q 003253 424 HLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 424 ~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
....+..|.|++|+||..||.+|+.
T Consensus 1831 l~~LA~~T~GfSGADLanLvNEAal 1855 (2281)
T CHL00206 1831 TNGFGSITMGSNARDLVALTNEALS 1855 (2281)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4455666677777777766665555
No 69
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.9e-21 Score=216.93 Aligned_cols=237 Identities=22% Similarity=0.291 Sum_probs=190.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 645 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~ 645 (836)
.+|||+||+|+|||.||+++++++ -+++..++|+.+.+..+....+.+..+|..+.+++|+||+||++|.|++...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc
Confidence 589999999999999999999988 3567789999998777777777889999999999999999999999998443
Q ss_pred CCch-HHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCC
Q 003253 646 NPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDL 722 (836)
Q Consensus 646 ~~~~-~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l 722 (836)
+... .......+..++.++-....+.+..+.+|||.+....+++.+.+ +|+.++.++.|...+|.+||+.++.+...
T Consensus 512 ~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~ 591 (952)
T KOG0735|consen 512 NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLS 591 (952)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhh
Confidence 3222 22223344445544433344556778999999999999998888 89999999999999999999999987653
Q ss_pred C-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 003253 723 S-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 801 (836)
Q Consensus 723 ~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~ 801 (836)
. ...|++-++..|+||...|+..++.+|.+.++.+... .....+|.++|.++++.+.
T Consensus 592 ~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris----------------------~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 592 DITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS----------------------NGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred hhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc----------------------cCcccchHHHHHHHHHhcC
Confidence 3 3345666999999999999999999999998844211 0112699999999999999
Q ss_pred cCccccccchhhH-HHHHHHhcCCCCcc
Q 003253 802 ASVSSESVNMSEL-LQWNELYGEGGSRR 828 (836)
Q Consensus 802 pS~~~~~~~~~~~-~~W~~i~G~~~~r~ 828 (836)
|...++.....+. .+|.||||....|+
T Consensus 650 P~aLR~ik~~k~tgi~w~digg~~~~k~ 677 (952)
T KOG0735|consen 650 PLALRGIKLVKSTGIRWEDIGGLFEAKK 677 (952)
T ss_pred hHHhhhccccccCCCCceecccHHHHHH
Confidence 9988887666655 89999999988775
No 70
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1e-20 Score=217.63 Aligned_cols=215 Identities=20% Similarity=0.323 Sum_probs=173.0
Q ss_pred cCCCccccccccccccccchhHHHHHHHHHHhccCCcc-cccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 003253 16 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKD-HAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 94 (836)
Q Consensus 16 v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~-~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ 94 (836)
....+.+.|+|++.-+- |..|..|.|.+ -.||.|. |.+.+. -.++++||.||||| .+++||||.|-+.++|
T Consensus 139 ~~~~~~~~v~F~DVAG~--dEakeel~EiV-dfLk~p~ky~~lGa---kiPkGvlLvGpPGT--GKTLLAkAvAgEA~VP 210 (596)
T COG0465 139 LYLEDQVKVTFADVAGV--DEAKEELSELV-DFLKNPKKYQALGA---KIPKGVLLVGPPGT--GKTLLAKAVAGEAGVP 210 (596)
T ss_pred HhcccccCcChhhhcCc--HHHHHHHHHHH-HHHhCchhhHhccc---ccccceeEecCCCC--CcHHHHHHHhcccCCC
Confidence 44455899999999998 99999999876 4566654 445554 56899999999998 8999999999999999
Q ss_pred EEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 003253 95 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 174 (836)
Q Consensus 95 ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (836)
+..+-.|+|.-
T Consensus 211 Ff~iSGS~FVe--------------------------------------------------------------------- 221 (596)
T COG0465 211 FFSISGSDFVE--------------------------------------------------------------------- 221 (596)
T ss_pred ceeccchhhhh---------------------------------------------------------------------
Confidence 87665433322
Q ss_pred ccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccc
Q 003253 175 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 254 (836)
Q Consensus 175 ~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~ 254 (836)
-|||-
T Consensus 222 ----------------mfVGv----------------------------------------------------------- 226 (596)
T COG0465 222 ----------------MFVGV----------------------------------------------------------- 226 (596)
T ss_pred ----------------hhcCC-----------------------------------------------------------
Confidence 33443
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc---------cCc---chhhHHHHHHhcCC-
Q 003253 255 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA---------GNS---DSYSTFKSRLEKLP- 321 (836)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~---------~~~---~~~~~l~~~l~~l~- 321 (836)
...-++.||+-+.+ .+||||||||||. ++ |+. +..|-+..++|...
T Consensus 227 -----------------GAsRVRdLF~qAkk---~aP~IIFIDEiDA-vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 227 -----------------GASRVRDLFEQAKK---NAPCIIFIDEIDA-VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred -----------------CcHHHHHHHHHhhc---cCCCeEEEehhhh-cccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 24557889999999 9999999999998 54 222 34455555566665
Q ss_pred -CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHH
Q 003253 322 -DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEA 400 (836)
Q Consensus 322 -g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~ 400 (836)
.+|+||++|||+| ++|+|++|||| |..+|.|.+||..+
T Consensus 286 ~~gviviaaTNRpd----------------------VlD~ALlRpgR-------------------FDRqI~V~~PDi~g 324 (596)
T COG0465 286 NEGVIVIAATNRPD----------------------VLDPALLRPGR-------------------FDRQILVELPDIKG 324 (596)
T ss_pred CCceEEEecCCCcc----------------------cchHhhcCCCC-------------------cceeeecCCcchhh
Confidence 4899999999999 89999999999 99999999999999
Q ss_pred HHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 401 LLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 401 rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
|.+||+.|+ ++.+++.+++....+-.|.|++|+||..++.+++.
T Consensus 325 Re~IlkvH~----~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal 368 (596)
T COG0465 325 REQILKVHA----KNKPLAEDVDLKKIARGTPGFSGADLANLLNEAAL 368 (596)
T ss_pred HHHHHHHHh----hcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHH
Confidence 999999998 77888888888888888888888888877665544
No 71
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=1e-19 Score=196.98 Aligned_cols=217 Identities=17% Similarity=0.241 Sum_probs=158.4
Q ss_pred hhhhchHHHHHHHHHHHhccccChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh-------CCCcceeeccc
Q 003253 534 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSS 604 (836)
Q Consensus 534 ~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~--p~~~vLL~GPpGtGKT~LA~alA~~l-------~~~~i~v~~s~ 604 (836)
.+++|++.+|+++++++.+. ...+...+.+... +..++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~-~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALL-LIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 47999999999999988653 2334333334333 34569999999999999999999876 23689999999
Q ss_pred cchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 605 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 605 l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
+.+.++|.++..+..+|..|. ++||||||++.+...+.. ......+.+.++..++.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcH
Confidence 999999988877777877764 489999999998653321 122345566666666543 2457777777642
Q ss_pred C-----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHH----Hc--CCCc-HHHHHHHHHHHH
Q 003253 685 F-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIAN----MT--DGYS-GSDLKNLCVTAA 751 (836)
Q Consensus 685 ~-----~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~----~t--~G~s-g~DL~~L~~~A~ 751 (836)
. .++|++.+||+.+|.|+.++.+++.+|+..++.+.... .+.....+.. .. ..|. +++++++++.|.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 1 35699999999999999999999999999999876543 2222333332 22 3344 899999999999
Q ss_pred HHHHHHHHHH
Q 003253 752 HRPIKEILEK 761 (836)
Q Consensus 752 ~~air~~~~~ 761 (836)
.+...|+...
T Consensus 252 ~~~~~r~~~~ 261 (287)
T CHL00181 252 MRQANRIFES 261 (287)
T ss_pred HHHHHHHHcC
Confidence 9888876553
No 72
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-20 Score=197.11 Aligned_cols=216 Identities=21% Similarity=0.258 Sum_probs=176.3
Q ss_pred ccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 22 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 22 ~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
-++||++.... -...-.|.+..-+||+.|+++ -+-=-..+...||+||||| +++.||+|.|...||.+|.+-++
T Consensus 127 ~~~s~~~~ggl--~~qirelre~ielpl~np~lf--~rvgIk~Pkg~ll~GppGt--GKTlla~~Vaa~mg~nfl~v~ss 200 (388)
T KOG0651|consen 127 RNISFENVGGL--FYQIRELREVIELPLTNPELF--LRVGIKPPKGLLLYGPPGT--GKTLLARAVAATMGVNFLKVVSS 200 (388)
T ss_pred cccCHHHhCCh--HHHHHHHHhheEeeccCchhc--cccCCCCCceeEEeCCCCC--chhHHHHHHHHhcCCceEEeeHh
Confidence 36789999887 566667899999999999994 3312345889999999999 99999999999999999998764
Q ss_pred ccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 003253 102 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 181 (836)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (836)
.|-.
T Consensus 201 ~lv~---------------------------------------------------------------------------- 204 (388)
T KOG0651|consen 201 ALVD---------------------------------------------------------------------------- 204 (388)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 4433
Q ss_pred cccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccccc
Q 003253 182 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 261 (836)
Q Consensus 182 ~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (836)
||+|+
T Consensus 205 ---------kyiGE------------------------------------------------------------------ 209 (388)
T KOG0651|consen 205 ---------KYIGE------------------------------------------------------------------ 209 (388)
T ss_pred ---------hhccc------------------------------------------------------------------
Confidence 77777
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhc--------cCcchhhHHHHHHhcCC-----CcEEEEe
Q 003253 262 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIA--------GNSDSYSTFKSRLEKLP-----DKVIVIG 328 (836)
Q Consensus 262 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~--------~~~~~~~~l~~~l~~l~-----g~v~vIg 328 (836)
..++|++.|.-|.. .+|||||+||||.+.+ .+.++-..|.+.|+++. ++|-+|+
T Consensus 210 ----------saRlIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Im 276 (388)
T KOG0651|consen 210 ----------SARLIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIM 276 (388)
T ss_pred ----------HHHHHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEE
Confidence 58899999999999 9999999999999776 33455555655555554 4999999
Q ss_pred eeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHh
Q 003253 329 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 408 (836)
Q Consensus 329 s~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~ 408 (836)
+||++| .||+|+.|||| .+.+++|++|++-.|+.|+|.|
T Consensus 277 atNrpd----------------------tLdpaLlRpGR-------------------ldrk~~iPlpne~~r~~I~Kih 315 (388)
T KOG0651|consen 277 ATNRPD----------------------TLDPALLRPGR-------------------LDRKVEIPLPNEQARLGILKIH 315 (388)
T ss_pred ecCCcc----------------------ccchhhcCCcc-------------------ccceeccCCcchhhceeeEeec
Confidence 999998 69999999999 8899999999999999999988
Q ss_pred hHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchH
Q 003253 409 LDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNE 452 (836)
Q Consensus 409 l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~ 452 (836)
-....+.- .++..+.+....++.|.|+...|+++-+|..-
T Consensus 316 ~~~i~~~G----eid~eaivK~~d~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 316 VQPIDFHG----EIDDEAILKLVDGFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred cccccccc----cccHHHHHHHHhccChHHHhhhcccccccccc
Confidence 74433333 33456667778899999999999999987643
No 73
>CHL00176 ftsH cell division protein; Validated
Probab=99.82 E-value=4.2e-20 Score=218.42 Aligned_cols=217 Identities=20% Similarity=0.298 Sum_probs=160.7
Q ss_pred ccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 003253 15 GILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 94 (836)
Q Consensus 15 ~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ 94 (836)
.+....+.+++|+++..+ +..|..|.+.+.. |++++. |..-=...+++|||+||||| ++++||||||++.+++
T Consensus 171 ~~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~~-lk~~~~--~~~~g~~~p~gVLL~GPpGT--GKT~LAralA~e~~~p 243 (638)
T CHL00176 171 RFQMEADTGITFRDIAGI--EEAKEEFEEVVSF-LKKPER--FTAVGAKIPKGVLLVGPPGT--GKTLLAKAIAGEAEVP 243 (638)
T ss_pred HhhcccCCCCCHHhccCh--HHHHHHHHHHHHH-HhCHHH--HhhccCCCCceEEEECCCCC--CHHHHHHHHHHHhCCC
Confidence 344566788999999999 9999999988765 888776 32222456788999999999 9999999999999999
Q ss_pred EEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 003253 95 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 174 (836)
Q Consensus 95 ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (836)
++.++.+.|..
T Consensus 244 ~i~is~s~f~~--------------------------------------------------------------------- 254 (638)
T CHL00176 244 FFSISGSEFVE--------------------------------------------------------------------- 254 (638)
T ss_pred eeeccHHHHHH---------------------------------------------------------------------
Confidence 98877544322
Q ss_pred ccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccc
Q 003253 175 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 254 (836)
Q Consensus 175 ~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~ 254 (836)
.|+|.
T Consensus 255 ----------------~~~g~----------------------------------------------------------- 259 (638)
T CHL00176 255 ----------------MFVGV----------------------------------------------------------- 259 (638)
T ss_pred ----------------Hhhhh-----------------------------------------------------------
Confidence 11111
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhcc--------Ccch---hhHHHHHHhcC--C
Q 003253 255 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSDS---YSTFKSRLEKL--P 321 (836)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~--------~~~~---~~~l~~~l~~l--~ 321 (836)
....++.+|+.+.. ..|+||||||||.+... +.+. .+.|...++.. .
T Consensus 260 -----------------~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 260 -----------------GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred -----------------hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 23346778888887 99999999999996531 2222 22233333332 2
Q ss_pred CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHH
Q 003253 322 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 401 (836)
Q Consensus 322 g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~r 401 (836)
.+|+|||+||+++ .+|+|++|||| |...|.|.+|+.++|
T Consensus 320 ~~ViVIaaTN~~~----------------------~LD~ALlRpGR-------------------Fd~~I~v~lPd~~~R 358 (638)
T CHL00176 320 KGVIVIAATNRVD----------------------ILDAALLRPGR-------------------FDRQITVSLPDREGR 358 (638)
T ss_pred CCeeEEEecCchH----------------------hhhhhhhcccc-------------------CceEEEECCCCHHHH
Confidence 4899999999997 69999999999 999999999999999
Q ss_pred HHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhcc
Q 003253 402 LASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQ 447 (836)
Q Consensus 402 l~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~ 447 (836)
.+||+.++.+ ..+..+.+....+..+.|++|+||..+|.+++
T Consensus 359 ~~IL~~~l~~----~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 359 LDILKVHARN----KKLSPDVSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred HHHHHHHHhh----cccchhHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 9999988844 33444555555666677777777776655443
No 74
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.81 E-value=3e-19 Score=191.42 Aligned_cols=218 Identities=16% Similarity=0.234 Sum_probs=156.3
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCC-CCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCCcceeecc
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQ-LTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 603 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~-~~~p~~~vLL~GPpGtGKT~LA~alA~~l-------~~~~i~v~~s 603 (836)
.+++++|++++|+++++.+.++.........+. ......++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 367899999999999998876543322222221 12234679999999999999999999875 2478889999
Q ss_pred ccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC
Q 003253 604 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 683 (836)
Q Consensus 604 ~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~ 683 (836)
++.+.++|+.+..+..+|..|. ++||||||+|.|..... .......+..++..++.. ..++++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 9999999999888899988764 48999999999953211 112234556666666553 244566655543
Q ss_pred C-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHc---------CCCcHHHHHHHHH
Q 003253 684 P-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMT---------DGYSGSDLKNLCV 748 (836)
Q Consensus 684 ~-----~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t---------~G~sg~DL~~L~~ 748 (836)
. ..++|++.+||+..+.|+.++.+++.+|++.++...+.. ++..+..++... ..-+++.++++++
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2 237889999998889999999999999999999876543 233344443321 1346788999999
Q ss_pred HHHHHHHHHHHH
Q 003253 749 TAAHRPIKEILE 760 (836)
Q Consensus 749 ~A~~~air~~~~ 760 (836)
.|..+...+++.
T Consensus 233 ~a~~~~~~r~~~ 244 (261)
T TIGR02881 233 KAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHhc
Confidence 988877666544
No 75
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.81 E-value=1.3e-19 Score=203.32 Aligned_cols=214 Identities=21% Similarity=0.325 Sum_probs=161.5
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+..+++|++++++ +..+..|.+++..+++++++.+.. ++ ..+++|||+||||| ++++||||+|++.+++++.+.
T Consensus 115 ~~p~~~~~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~-g~-~~p~gvLL~GppGt--GKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 115 ERPNVSYEDIGGL--EEQIREIREAVELPLKHPELFEEV-GI-EPPKGVLLYGPPGT--GKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred cCCCCCHHHhCCh--HHHHHHHHHHHHHHhcCHHHHHhc-CC-CCCceEEEECCCCC--CHHHHHHHHHHhCCCCEEecc
Confidence 4567899999999 999999999999999999875321 12 34678999999999 999999999999999887665
Q ss_pred ccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 003253 100 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 179 (836)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (836)
.+.+..
T Consensus 189 ~~~l~~-------------------------------------------------------------------------- 194 (364)
T TIGR01242 189 GSELVR-------------------------------------------------------------------------- 194 (364)
T ss_pred hHHHHH--------------------------------------------------------------------------
Confidence 322211
Q ss_pred cccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccc
Q 003253 180 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 259 (836)
Q Consensus 180 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (836)
+|+|.
T Consensus 195 -----------~~~g~---------------------------------------------------------------- 199 (364)
T TIGR01242 195 -----------KYIGE---------------------------------------------------------------- 199 (364)
T ss_pred -----------HhhhH----------------------------------------------------------------
Confidence 22322
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC--------cchhhHHH---HHHhcC--CCcEEE
Q 003253 260 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFK---SRLEKL--PDKVIV 326 (836)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~--------~~~~~~l~---~~l~~l--~g~v~v 326 (836)
....+..+|+.+.. ..|+||||||+|.+...+ .+....+. ..++.. .++|+|
T Consensus 200 ------------~~~~i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 200 ------------GARLVREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred ------------HHHHHHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 34567888998888 899999999999976421 11112222 233333 358999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHH
Q 003253 327 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 406 (836)
Q Consensus 327 Igs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk 406 (836)
||+||+++ .+|+|++|||| |...|+|++|+.++|.+||+
T Consensus 265 I~ttn~~~----------------------~ld~al~r~gr-------------------fd~~i~v~~P~~~~r~~Il~ 303 (364)
T TIGR01242 265 IAATNRPD----------------------ILDPALLRPGR-------------------FDRIIEVPLPDFEGRLEILK 303 (364)
T ss_pred EEecCChh----------------------hCChhhcCccc-------------------CceEEEeCCcCHHHHHHHHH
Confidence 99999987 68999999999 99999999999999999999
Q ss_pred HhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 407 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 407 ~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
.++. ...+..+++....+..+.|++|+||..+|..+.+
T Consensus 304 ~~~~----~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~ 341 (364)
T TIGR01242 304 IHTR----KMKLAEDVDLEAIAKMTEGASGADLKAICTEAGM 341 (364)
T ss_pred HHHh----cCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 8773 3445555666666777778777777777665554
No 76
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.81 E-value=4e-19 Score=192.63 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhcc--CCCCeEEEEcCchhhhccCc--------chh-hHHHHHHhc--------------CCCcEEE
Q 003253 272 DKLLINTLFEVVFSES--RSCPFILFMKDAEKSIAGNS--------DSY-STFKSRLEK--------------LPDKVIV 326 (836)
Q Consensus 272 ~~~~i~~l~~~~~~~~--~~~p~Ilfi~ei~~~l~~~~--------~~~-~~l~~~l~~--------------l~g~v~v 326 (836)
..++|+++|..|...+ +.+||||||||||.+++... ++. ..|.+.++. -..+|+|
T Consensus 192 sEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~V 271 (413)
T PLN00020 192 PGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPI 271 (413)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceE
Confidence 6899999999998753 67899999999999776321 121 334444442 1357999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHH
Q 003253 327 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 406 (836)
Q Consensus 327 Igs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk 406 (836)
||+||+++ .||+||+|||| |+.. |.+|+.++|..||+
T Consensus 272 IaTTNrpd----------------------~LDpALlRpGR-------------------fDk~--i~lPd~e~R~eIL~ 308 (413)
T PLN00020 272 IVTGNDFS----------------------TLYAPLIRDGR-------------------MEKF--YWAPTREDRIGVVH 308 (413)
T ss_pred EEeCCCcc----------------------cCCHhHcCCCC-------------------CCce--eCCCCHHHHHHHHH
Confidence 99999998 69999999999 8764 46999999999999
Q ss_pred HhhHh
Q 003253 407 HQLDR 411 (836)
Q Consensus 407 ~~l~e 411 (836)
.++.+
T Consensus 309 ~~~r~ 313 (413)
T PLN00020 309 GIFRD 313 (413)
T ss_pred HHhcc
Confidence 88744
No 77
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.81 E-value=4.6e-19 Score=191.93 Aligned_cols=215 Identities=16% Similarity=0.227 Sum_probs=159.3
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHhC-------CCcceeecccc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 605 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~--~p~~~vLL~GPpGtGKT~LA~alA~~l~-------~~~i~v~~s~l 605 (836)
+++|++++|+++.+++.+ +..++.+.+.+.. .|..++||+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998876 4444444443433 2556899999999999999999998772 37999999999
Q ss_pred chhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-
Q 003253 606 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP- 684 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~- 684 (836)
.+.++|.++..+..+|..|.. +||||||++.|.+.+.. ......+.+.++..++.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 999999988888888887644 89999999998643321 122234556666666543 2567777776542
Q ss_pred -C---CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHH-------cCCCcHHHHHHHHHHHHH
Q 003253 685 -F---DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANM-------TDGYSGSDLKNLCVTAAH 752 (836)
Q Consensus 685 -~---~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~-------t~G~sg~DL~~L~~~A~~ 752 (836)
+ .++|++.+||...|+|+.++.+++..|++.++.+.... .+.....++.. ...-++++++++++.|..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 2 35899999999999999999999999999999886543 22233444443 123458999999999998
Q ss_pred HHHHHHHH
Q 003253 753 RPIKEILE 760 (836)
Q Consensus 753 ~air~~~~ 760 (836)
+...|+..
T Consensus 252 ~~~~r~~~ 259 (284)
T TIGR02880 252 RQANRLFC 259 (284)
T ss_pred HHHHHHhc
Confidence 87777644
No 78
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1e-18 Score=187.61 Aligned_cols=208 Identities=26% Similarity=0.443 Sum_probs=162.9
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 609 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~ 609 (836)
+-.+++++....+++.++.+....-+ . .....|.++||||||||||||++|+-||..+|..+-.+...++.- +
T Consensus 351 k~pl~~ViL~psLe~Rie~lA~aTaN-T-----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-l 423 (630)
T KOG0742|consen 351 KDPLEGVILHPSLEKRIEDLAIATAN-T-----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-L 423 (630)
T ss_pred CCCcCCeecCHHHHHHHHHHHHHhcc-c-----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-c
Confidence 34478888888888888876653111 1 122356789999999999999999999999999988877766532 1
Q ss_pred ccccHHHHHHHHHHHHhcCCc-eEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc
Q 003253 610 FGEGEKYVKAVFSLASKIAPS-VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 688 (836)
Q Consensus 610 ~g~~e~~i~~lf~~A~~~~ps-IL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld 688 (836)
-...-..++++|+-|+++..+ +|||||.|.++..|......+..+..++.|+..--. ...+++++.+||+|.++|
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLD 499 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchh
Confidence 122345789999999988655 788999999999998888888888899988743322 236788899999999999
Q ss_pred HHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC---------------------------CcccHHHHHHHcCCCcHH
Q 003253 689 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS---------------------------PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 689 ~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~---------------------------~d~dl~~LA~~t~G~sg~ 741 (836)
.++-.||+.+++|++|..++|.++|..++.+.-.. .+.-..+.|..|+||||+
T Consensus 500 sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 500 SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 99999999999999999999999999988753211 011246788999999999
Q ss_pred HHHHHHH
Q 003253 742 DLKNLCV 748 (836)
Q Consensus 742 DL~~L~~ 748 (836)
+|..|+.
T Consensus 580 EiakLva 586 (630)
T KOG0742|consen 580 EIAKLVA 586 (630)
T ss_pred HHHHHHH
Confidence 9998864
No 79
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.5e-19 Score=186.13 Aligned_cols=194 Identities=28% Similarity=0.405 Sum_probs=153.7
Q ss_pred CCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------
Q 003253 524 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--------- 594 (836)
Q Consensus 524 i~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~--------- 594 (836)
+|..+..--|+.++--.++|+.|..++...+...+.-....+..--+-+||+||||||||+|++|+|+.+.
T Consensus 132 LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~ 211 (423)
T KOG0744|consen 132 LPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYK 211 (423)
T ss_pred ccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCcccc
Confidence 44444455688888888999999998876555444332222222335599999999999999999999982
Q ss_pred CCcceeeccccchhcccccHHHHHHHHHHHHhc---C--CceEEEccchhhhcCCCC---CchHHHHHHHHHHHHHHhcC
Q 003253 595 ANFINISMSSITSKWFGEGEKYVKAVFSLASKI---A--PSVIFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVNWDG 666 (836)
Q Consensus 595 ~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~---~--psIL~IDEID~L~~~r~~---~~~~~~~~~il~~ll~~ld~ 666 (836)
..++++++..++++|++++.+.+.++|...... . --.++|||++.|...|.+ ..+....-++.+.++.++|.
T Consensus 212 ~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr 291 (423)
T KOG0744|consen 212 GQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR 291 (423)
T ss_pred ceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Confidence 457889999999999999999999999877544 2 236679999999866522 22333345788999999999
Q ss_pred CcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 003253 667 LRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 719 (836)
Q Consensus 667 ~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~ 719 (836)
+.. ..+|++++|+|-.+.+|.++..|-|-+.++++|+...+.+|++.++..
T Consensus 292 lK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 292 LKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred hcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 854 478999999999999999999999999999999999999999998865
No 80
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.78 E-value=7.8e-19 Score=209.69 Aligned_cols=217 Identities=17% Similarity=0.299 Sum_probs=158.3
Q ss_pred ccCCCccccccccccccccchhHHHHHHHHHHhccCCcccc-cccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCC
Q 003253 15 GILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 93 (836)
Q Consensus 15 ~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~-~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~ 93 (836)
...++..+.++|+++..+ +..+..|.+.+.. ++.++.. ... ...++.|||+||||| .+++|||+||++.++
T Consensus 140 ~~~~~~~~~~~~~di~g~--~~~~~~l~~i~~~-~~~~~~~~~~~---~~~~~gill~G~~G~--GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 140 RMLTEDQIKTTFADVAGC--DEAKEEVAELVEY-LREPSRFQKLG---GKIPKGVLMVGPPGT--GKTLLAKAIAGEAKV 211 (644)
T ss_pred cccCchhhhCcHHHHcCH--HHHHHHHHHHHHH-hhCHHHHHhcC---CCCCCcEEEECCCCC--CHHHHHHHHHHHcCC
Confidence 345667889999999998 9999999887766 5554432 221 245677999999999 999999999999999
Q ss_pred eEEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 003253 94 KLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTL 173 (836)
Q Consensus 94 ~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (836)
+++.++.+++..
T Consensus 212 ~f~~is~~~~~~-------------------------------------------------------------------- 223 (644)
T PRK10733 212 PFFTISGSDFVE-------------------------------------------------------------------- 223 (644)
T ss_pred CEEEEehHHhHH--------------------------------------------------------------------
Confidence 999887644332
Q ss_pred cccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcc
Q 003253 174 TSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHG 253 (836)
Q Consensus 174 ~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~ 253 (836)
.|+|.
T Consensus 224 -----------------~~~g~---------------------------------------------------------- 228 (644)
T PRK10733 224 -----------------MFVGV---------------------------------------------------------- 228 (644)
T ss_pred -----------------hhhcc----------------------------------------------------------
Confidence 12221
Q ss_pred cccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC--------c---chhhHHHHHHhcCC-
Q 003253 254 FFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------S---DSYSTFKSRLEKLP- 321 (836)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~--------~---~~~~~l~~~l~~l~- 321 (836)
....+..+|+.+.. ..|+||||||||.+...+ . +..+.+...|+...
T Consensus 229 ------------------~~~~~~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 229 ------------------GASRVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred ------------------cHHHHHHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 13345677888877 899999999999965421 1 13344444455443
Q ss_pred -CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHH
Q 003253 322 -DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEA 400 (836)
Q Consensus 322 -g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~ 400 (836)
.+|+|||+||+++ .||+|++|||| |..+|+|++|+.++
T Consensus 288 ~~~vivIaaTN~p~----------------------~lD~Al~RpgR-------------------fdr~i~v~~Pd~~~ 326 (644)
T PRK10733 288 NEGIIVIAATNRPD----------------------VLDPALLRPGR-------------------FDRQVVVGLPDVRG 326 (644)
T ss_pred CCCeeEEEecCChh----------------------hcCHHHhCCcc-------------------cceEEEcCCCCHHH
Confidence 3799999999998 69999999999 99999999999999
Q ss_pred HHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 401 LLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 401 rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
|.+||+.++. ...+..+++....+..+.||+|+||..+|.+++.
T Consensus 327 R~~Il~~~~~----~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 327 REQILKVHMR----RVPLAPDIDAAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred HHHHHHHHhh----cCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 9999998883 3445555555555555666666666655554443
No 81
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.78 E-value=6.5e-19 Score=167.47 Aligned_cols=130 Identities=38% Similarity=0.648 Sum_probs=114.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcC-CceEEEccchhhhcCCCCCchH
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEH 650 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~-psIL~IDEID~L~~~r~~~~~~ 650 (836)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.+..+..+..+|..+.+.. |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998889999999999999999988 9999999999998776 33445
Q ss_pred HHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHH-hhccccccCCC
Q 003253 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVI-RRLPRRLMVNL 703 (836)
Q Consensus 651 ~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~-rRf~~~I~v~~ 703 (836)
.....+.+.++..++..... ..+++||+|||.++.+++.++ +||+..+.+++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 56677888888888887643 367999999999999999999 99998888763
No 82
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.71 E-value=2.8e-17 Score=168.17 Aligned_cols=196 Identities=22% Similarity=0.299 Sum_probs=122.6
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 610 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~ 610 (836)
.+|+|++|+++++..++-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++.+.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 47999999999999988776532111 234579999999999999999999999999998887754321
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH-HhcCCccc------CcccEEEEeccCC
Q 003253 611 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTK------DTERILVLAATNR 683 (836)
Q Consensus 611 g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~-~ld~~~~~------~~~~vlVIaTTn~ 683 (836)
..-+..++.... ...|||||||++| +...++.+...++.+.. .+-|..+. +-.++.+|++|.+
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 122333433332 4579999999998 43334433333332211 11111111 1146889999999
Q ss_pred CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 003253 684 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 749 (836)
Q Consensus 684 ~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~ 749 (836)
...+...++.||.....+..++.++..+|++......++. .+....++|..+.| +++-..+|++.
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 9999999999998778899999999999999877776665 45557889999998 55544444443
No 83
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.69 E-value=4e-16 Score=189.61 Aligned_cols=184 Identities=24% Similarity=0.393 Sum_probs=138.8
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCcceee
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 601 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~ 601 (836)
.+++++|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.++
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 567889999888877766542 223589999999999999999999987 66788888
Q ss_pred ccccc--hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCch-HHHHHHHHHHHHHHhcCCcccCcccEEEE
Q 003253 602 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDTERILVL 678 (836)
Q Consensus 602 ~s~l~--s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~-~~~~~~il~~ll~~ld~~~~~~~~~vlVI 678 (836)
++.+. .++.|+.+..++.+|+.+.+..++||||||||.|++.....+. .... .++ ...+ .++.+.+|
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~-~~L---~~~l------~~g~i~~I 315 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS-NLL---KPAL------SSGKLRCI 315 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH-HHH---HHHH------hCCCeEEE
Confidence 88876 4788999999999999998888999999999999876432222 2222 222 2222 23578999
Q ss_pred eccCCC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHcCCCcH
Q 003253 679 AATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMTDGYSG 740 (836)
Q Consensus 679 aTTn~~-----~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~----~l~-~d~dl~~LA~~t~G~sg 740 (836)
++||.. ...++++.|||. .|.++.|+.+++.+|++.+.... ++. .+..+..++..+..|.+
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 999863 357999999995 79999999999999999876542 222 45556777777766654
No 84
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.69 E-value=7.5e-16 Score=167.29 Aligned_cols=180 Identities=27% Similarity=0.461 Sum_probs=130.8
Q ss_pred ccchhhhchHHHH---HHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 531 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 531 ~~~~di~G~~~vk---~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+++|++|++.+. .-|++++. .....+++||||||||||+||+.||...+.+|..++...
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~--------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVE--------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHh--------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 4789999998886 44666665 223468999999999999999999999999999998643
Q ss_pred hcccccHHHHHHHHHHHHhcC----CceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEecc--
Q 003253 608 KWFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 681 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~----psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTT-- 681 (836)
..-+-++.+++.|++.. ..|||||||+++ +...|.+ |+-.+ +++.+++||+|
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQD~-------lLp~v------E~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQDA-------LLPHV------ENGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhhhh-------hhhhh------cCCeEEEEeccCC
Confidence 34567899999996553 379999999988 4333332 22222 33667788766
Q ss_pred CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh--CCCC------CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 682 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK--EDLS------PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 682 n~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~--~~l~------~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
|+...+.+++++|. .++.+.+.+.++..++++..+.. .++. ++..++.|+..++|-..+-| ++++.|+
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL-N~LE~~~ 217 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL-NLLELAA 217 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH-HHHHHHH
Confidence 55678999999999 78999999999999999984432 2333 24456778888877544333 3334433
No 85
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.8e-16 Score=170.30 Aligned_cols=219 Identities=17% Similarity=0.308 Sum_probs=166.3
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 610 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~ 610 (836)
.+|+.++-..++|+.+.+-+....+..+.|.+.+.. --+|.|||||||||||+++.|+|+.+++.++.+..++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGka-wKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKA-WKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcc-hhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 789999999999999999998888899988876533 34899999999999999999999999999999988775332
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCch-----H-HHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 611 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE-----H-EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 611 g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~-----~-~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
.. ++.+...+. ..+||+|++||.-+.-+..... + ....-.+..||..+||+....+.--+||.|||.+
T Consensus 275 ---~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 ---SD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred ---HH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 12 666654332 3489999999987643322111 1 1123467789999999998876677889999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCC--CcHHHHHHHHHH---HHHHHHHH
Q 003253 685 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDG--YSGSDLKNLCVT---AAHRPIKE 757 (836)
Q Consensus 685 ~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G--~sg~DL~~L~~~---A~~~air~ 757 (836)
+.|||+++| |.|..|+++..+.++-+.++..++.... +..-+.++.+..++ .||+|+....-. .+..+++.
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999986532 12234455554444 589998755322 35555666
Q ss_pred HHH
Q 003253 758 ILE 760 (836)
Q Consensus 758 ~~~ 760 (836)
+++
T Consensus 427 Lv~ 429 (457)
T KOG0743|consen 427 LVE 429 (457)
T ss_pred HHH
Confidence 555
No 86
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.4e-15 Score=174.67 Aligned_cols=128 Identities=23% Similarity=0.323 Sum_probs=90.1
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc--hh
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--SK 608 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~--~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~--s~ 608 (836)
++|++++...+-+.|... +.+.. +|...+||.||.|+|||-||+++|..+ .-.++.++++++. ++
T Consensus 564 V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred ccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 455555555555555431 11223 367889999999999999999999998 4579999998742 23
Q ss_pred cccccHH-----HHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCc-------ccEE
Q 003253 609 WFGEGEK-----YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT-------ERIL 676 (836)
Q Consensus 609 ~~g~~e~-----~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~-------~~vl 676 (836)
..|.+.+ ....+.+..++.+.+||+|||||.- ...+++.++..+|.....+. .+++
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 3344332 2457888888889999999999944 35566667777766554432 6799
Q ss_pred EEeccCC
Q 003253 677 VLAATNR 683 (836)
Q Consensus 677 VIaTTn~ 683 (836)
||+|+|.
T Consensus 704 ~IMTsn~ 710 (898)
T KOG1051|consen 704 FIMTSNV 710 (898)
T ss_pred EEEeccc
Confidence 9999876
No 87
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.67 E-value=2.7e-15 Score=164.34 Aligned_cols=199 Identities=21% Similarity=0.239 Sum_probs=135.4
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhccc
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 611 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g 611 (836)
+|++++|++++++.|..++..... ...++.+++|+||||+|||++|+++|++++.++..+..+.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~---------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~---- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM---------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK---- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC----
Confidence 689999999999999988753211 1233468999999999999999999999988776655432211
Q ss_pred ccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHH--hcCC-cc----cCcccEEEEeccCCC
Q 003253 612 EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGL-RT----KDTERILVLAATNRP 684 (836)
Q Consensus 612 ~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~--ld~~-~~----~~~~~vlVIaTTn~~ 684 (836)
...+...+... ..+.+||||||+.+. ....+.+..+++..... ++.. .. ....++.+|++||.+
T Consensus 69 --~~~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 69 --PGDLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred --chhHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 11222222222 246899999999883 22223333332222111 0100 00 011347889999999
Q ss_pred CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 685 FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 685 ~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
..+++++++||...+.++.|+.+++.++++..+...++. ++..+..++..+.|+. +.+..++..+...
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 999999999998888999999999999999988766554 4455788999988855 5566777665433
No 88
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.67 E-value=6.4e-15 Score=163.21 Aligned_cols=200 Identities=21% Similarity=0.240 Sum_probs=138.7
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 610 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~ 610 (836)
.+|++++|+++.++.+...+..... ...++.++||+||||+|||++|+++|++++..+..++.+.+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~---------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK---------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh---------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4799999999999999888753111 124557899999999999999999999999887766654321
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHH--hcCCccc-----CcccEEEEeccCC
Q 003253 611 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLRTK-----DTERILVLAATNR 683 (836)
Q Consensus 611 g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~--ld~~~~~-----~~~~vlVIaTTn~ 683 (836)
....+..++... ..++||||||||.+. ....+.+...++..... ++..... .-.++.+|++|+.
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 122334444332 346899999999882 22222222222221100 1110000 1134788999999
Q ss_pred CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 684 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 684 ~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
+..+++.+++||...+.++.|+.+++.+|++..+...++. ++..+..|+..+.|.. +.+..++..+...
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~ 229 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDF 229 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHH
Confidence 9999999999998889999999999999999998877665 4455788999998854 6666666655443
No 89
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.63 E-value=3e-15 Score=182.98 Aligned_cols=213 Identities=18% Similarity=0.283 Sum_probs=142.0
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc--------
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 606 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~-------- 606 (836)
+++|++++++.+.+++..+... .. .....+||+||||||||++|+++|+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GK--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 4889999999999977643221 11 1223799999999999999999999999999999875432
Q ss_pred -hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHH-----HHHHhcCCcccCcccEEEEec
Q 003253 607 -SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDTERILVLAA 680 (836)
Q Consensus 607 -s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~-----ll~~ld~~~~~~~~~vlVIaT 680 (836)
..|.|...+.+.+.|..+....| ||||||||.+...... ....++..++.. |.....+. ..+..++++|+|
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~~aLl~~ld~~~~~~f~d~~~~~-~~d~s~v~~I~T 469 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPASALLEVLDPEQNNAFSDHYLDV-PFDLSKVIFIAT 469 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHHHHHHHhcCHHhcCccccccCCc-eeccCCEEEEEe
Confidence 24677777788888888766555 8999999999643211 111222222211 10000011 112257899999
Q ss_pred cCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHh-----hCCCC------CcccHHHHHH-HcCCCcHHHHHHHHH
Q 003253 681 TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA-----KEDLS------PDVDFDAIAN-MTDGYSGSDLKNLCV 748 (836)
Q Consensus 681 Tn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~-----~~~l~------~d~dl~~LA~-~t~G~sg~DL~~L~~ 748 (836)
||..+.+++++++|| .+|.|+.|+.+++.+|++.++. ..++. .+..+..|++ .+..+..++|+..+.
T Consensus 470 tN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 470 ANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred cCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 999999999999999 5889999999999999988762 22332 2223444443 333444566666666
Q ss_pred HHHHHHHHHHH
Q 003253 749 TAAHRPIKEIL 759 (836)
Q Consensus 749 ~A~~~air~~~ 759 (836)
.....+.++++
T Consensus 549 ~~~~~~~~~~~ 559 (775)
T TIGR00763 549 KICRKAAVKLV 559 (775)
T ss_pred HHHHHHHHHHH
Confidence 65555544443
No 90
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.4e-14 Score=150.82 Aligned_cols=195 Identities=23% Similarity=0.289 Sum_probs=140.9
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 610 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~ 610 (836)
..|+|.+|++++|++|+-++.....+ ....-++||+||||.|||+||+.+|+++|.++...+.+.+..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 47999999999999999888753322 234579999999999999999999999999988777665421
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHh-cCCccc------CcccEEEEeccCC
Q 003253 611 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW-DGLRTK------DTERILVLAATNR 683 (836)
Q Consensus 611 g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~l-d~~~~~------~~~~vlVIaTTn~ 683 (836)
..-+..++... ....|||||||+++ ++...+.+...+..+...+ -|..+. +-.++.+|++|.+
T Consensus 91 ---~gDlaaiLt~L--e~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 91 ---PGDLAAILTNL--EEGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred ---hhhHHHHHhcC--CcCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 22233333322 23479999999999 4334444444444442221 111111 1256889999999
Q ss_pred CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 003253 684 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCV 748 (836)
Q Consensus 684 ~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~ 748 (836)
...|...++.||....++..++.++..+|+.......++. .+....++|+++.|. ++--..|++
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT-PRIAnRLLr 225 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT-PRIANRLLR 225 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC-cHHHHHHHH
Confidence 9999999999999999999999999999999988777766 455678899999984 443333333
No 91
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.60 E-value=1e-14 Score=170.80 Aligned_cols=221 Identities=21% Similarity=0.305 Sum_probs=146.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCccee
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 600 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v 600 (836)
.+|++++|++...+.++..+.. ..+.++||+||||||||++|+++++.+ +.+|+.+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~--------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG--------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 6799999999999888865431 223589999999999999999998753 3678999
Q ss_pred ecccc-------chhcccccHHHH---HHHHH----------HHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHH
Q 003253 601 SMSSI-------TSKWFGEGEKYV---KAVFS----------LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 660 (836)
Q Consensus 601 ~~s~l-------~s~~~g~~e~~i---~~lf~----------~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~l 660 (836)
+|... ....++.....+ ...|. ...+...++||||||+.| ++..+..+.+++++-
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-----~~~~q~~LL~~Le~~ 202 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-----HPVQMNKLLKVLEDR 202 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-----CHHHHHHHHHHHHhC
Confidence 98642 111112100000 00000 111234489999999998 444455544444432
Q ss_pred HHHhcC-----Cc------------ccCccc-EEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCC
Q 003253 661 MVNWDG-----LR------------TKDTER-ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDL 722 (836)
Q Consensus 661 l~~ld~-----~~------------~~~~~~-vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l 722 (836)
...+.. .. ..-+.. .+|++||+.++.+++++++|+ ..+.++.++.+++.+|++..+++.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~i 281 (531)
T TIGR02902 203 KVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIGI 281 (531)
T ss_pred eeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 222211 00 000122 455567788999999999999 57889999999999999999988775
Q ss_pred C-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHH
Q 003253 723 S-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHER 799 (836)
Q Consensus 723 ~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~ 799 (836)
. ++..++.|+..+. +++++.++++.|+..+..+ ....++.+|+++++..
T Consensus 282 ~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~--------------------------~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 282 NLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE--------------------------GRKRILAEDIEWVAEN 331 (531)
T ss_pred CcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC--------------------------CCcEEcHHHHHHHhCC
Confidence 5 4444666666554 7899999999888655332 1135899999999873
No 92
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.60 E-value=1.6e-14 Score=174.12 Aligned_cols=197 Identities=19% Similarity=0.297 Sum_probs=140.8
Q ss_pred chhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCcceeec
Q 003253 533 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISM 602 (836)
Q Consensus 533 ~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~~ 602 (836)
++.++|.+.....+.+.+.. +...++||+||||||||++|+++|... +..++.++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 45678888888777776652 122578999999999999999999875 344455555
Q ss_pred cccc--hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEec
Q 003253 603 SSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 680 (836)
Q Consensus 603 s~l~--s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaT 680 (836)
..+. ..+.|+.+..++.+|..+.+..++||||||||.|++.+.....+.....++..++ .+..+.+|++
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEec
Confidence 5544 3567888999999999998888999999999999877643222222222333332 2367899999
Q ss_pred cCCCC-----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-----CcccHHHHHHHcC-----CCcHHHHHH
Q 003253 681 TNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-----PDVDFDAIANMTD-----GYSGSDLKN 745 (836)
Q Consensus 681 Tn~~~-----~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-----~d~dl~~LA~~t~-----G~sg~DL~~ 745 (836)
|+.++ ..|+++.||| ..|.++.|+.+++.+||+.+....... .+..+..++..+. -+.+.....
T Consensus 322 Tt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 98754 5799999999 489999999999999999876654322 2333444444443 345667788
Q ss_pred HHHHHHHH
Q 003253 746 LCVTAAHR 753 (836)
Q Consensus 746 L~~~A~~~ 753 (836)
++.+|+..
T Consensus 401 lldea~a~ 408 (758)
T PRK11034 401 VIDEAGAR 408 (758)
T ss_pred HHHHHHHh
Confidence 88888754
No 93
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.2e-14 Score=162.99 Aligned_cols=183 Identities=19% Similarity=0.247 Sum_probs=132.6
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|+|++|++.+...|+..+.. .+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 5899999999999999988863 2233569999999999999999999998653
Q ss_pred ----------cceeeccccchhcccccHHHHHHHHHHHH----hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 597 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 597 ----------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~----~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
|+.++... ...-..++.+.+.+. .....|+||||+|.| + ....+.|+.
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----s-------~~A~NALLK 143 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----T-------DQSFNALLK 143 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----C-------HHHHHHHHH
Confidence 12222111 011223454444333 234569999999988 2 223455555
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++. +..++++|.+|+.++.+.+.+++|+ ..+.|..++.++..++++.++..+++. ++..+..||+.++| +.+
T Consensus 144 tLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~R 217 (484)
T PRK14956 144 TLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVR 217 (484)
T ss_pred Hhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHH
Confidence 5543 3367888888888999999999999 678999999999999999999888765 45567888888887 455
Q ss_pred HHHHHHHHH
Q 003253 742 DLKNLCVTA 750 (836)
Q Consensus 742 DL~~L~~~A 750 (836)
+..++++.+
T Consensus 218 dAL~lLeq~ 226 (484)
T PRK14956 218 DMLSFMEQA 226 (484)
T ss_pred HHHHHHHHH
Confidence 555555544
No 94
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.4e-14 Score=166.12 Aligned_cols=184 Identities=20% Similarity=0.272 Sum_probs=134.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|+|++|++.+++.|++.+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 13 qtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 5899999999999999998863 2334678999999999999999999999761
Q ss_pred ---------------cceeeccccchhcccccHHHHHHHHHHHH----hcCCceEEEccchhhhcCCCCCchHHHHHHHH
Q 003253 597 ---------------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMK 657 (836)
Q Consensus 597 ---------------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~----~~~psIL~IDEID~L~~~r~~~~~~~~~~~il 657 (836)
++.++... ...-..++.+.+.+. .....|+||||+|.| + ....
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-----s-------~~Aa 141 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-----T-------NHAF 141 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----C-------HHHH
Confidence 11121110 111233555555443 234579999999988 2 2234
Q ss_pred HHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcC
Q 003253 658 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDFDAIANMTD 736 (836)
Q Consensus 658 ~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d-~dl~~LA~~t~ 736 (836)
+.|+..++. ...++++|.+||.++.|.+.+++|| ..+.|..++.++..+.++.++.++++..+ ..+..|+..++
T Consensus 142 NALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 555555544 3367888888999999999999999 78999999999999999999888776533 44677888887
Q ss_pred CCcHHHHHHHHHHHH
Q 003253 737 GYSGSDLKNLCVTAA 751 (836)
Q Consensus 737 G~sg~DL~~L~~~A~ 751 (836)
| +.++..+++..+.
T Consensus 217 G-s~RdALsLLdQai 230 (700)
T PRK12323 217 G-SMRDALSLTDQAI 230 (700)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 5666666665543
No 95
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.8e-14 Score=167.39 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=133.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcc--eeecc-----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI--NISMS----- 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i--~v~~s----- 603 (836)
.+|++++|++.+++.|+..+.. .+..+.+||+||+|+|||++|+++|+.+++.-- ...|.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 5899999999999999998762 233467899999999999999999999965210 00110
Q ss_pred ---------ccch--hcccccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 604 ---------SITS--KWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 604 ---------~l~s--~~~g~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
+++. ......-..++.+.+.+.. ....|+||||+|.| +. ...+.|+..|+.
T Consensus 80 r~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----T~-------~A~NALLKtLEE-- 145 (830)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----TN-------HAFNAMLKTLEE-- 145 (830)
T ss_pred HHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----CH-------HHHHHHHHHHHh--
Confidence 0100 0001112335556555432 23579999999988 21 223444444443
Q ss_pred ccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 003253 669 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
...++.+|.+||.++.|.+.|++|| ..+.|..++.++..++|+.++..+++. ++..+..|++.++|- .++..+++
T Consensus 146 --PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-mRdALsLL 221 (830)
T PRK07003 146 --PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-MRDALSLT 221 (830)
T ss_pred --cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHH
Confidence 2357888889999999999999999 789999999999999999999888765 455678888888884 45555665
Q ss_pred HHHH
Q 003253 748 VTAA 751 (836)
Q Consensus 748 ~~A~ 751 (836)
..+.
T Consensus 222 dQAi 225 (830)
T PRK07003 222 DQAI 225 (830)
T ss_pred HHHH
Confidence 5544
No 96
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2.6e-14 Score=163.27 Aligned_cols=173 Identities=21% Similarity=0.339 Sum_probs=127.0
Q ss_pred hhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc--------
Q 003253 534 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-------- 605 (836)
Q Consensus 534 ~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l-------- 605 (836)
+|-.|++++|+++.+++.-. +.+.....+-++|+||||+|||++|+.||..++..|++++...+
T Consensus 411 eDHYgm~dVKeRILEfiAV~--------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVG--------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHH--------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 46789999999999988631 11112223468999999999999999999999999999987544
Q ss_pred -chhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHH-----HHHHHhcCCcccCcccEEEEe
Q 003253 606 -TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDTERILVLA 679 (836)
Q Consensus 606 -~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~-----~ll~~ld~~~~~~~~~vlVIa 679 (836)
...|+|...+.+-+.+.......| +++|||||.+.. ........++..++. .|+...-.++. +-.+|++||
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFic 559 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-GHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFIC 559 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-CCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEE
Confidence 224788888887777776666554 889999999962 222222233332221 12222222222 337899999
Q ss_pred ccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHh
Q 003253 680 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA 718 (836)
Q Consensus 680 TTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~ 718 (836)
|+|..+.+++.++.|+ .+|.++-+..++..+|.+.+|-
T Consensus 560 TAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred eccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhh
Confidence 9999999999999999 7899999999999999998874
No 97
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.56 E-value=7.4e-14 Score=171.29 Aligned_cols=197 Identities=20% Similarity=0.325 Sum_probs=141.9
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCcceee
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 601 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~ 601 (836)
.+++++|.+.....+.+.+.. +...+++|+||||+|||++|+.+|..+ +..++.++
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 567889999876666554431 223589999999999999999999987 24466777
Q ss_pred ccccc--hhcccccHHHHHHHHHHHHhc-CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEE
Q 003253 602 MSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 678 (836)
Q Consensus 602 ~s~l~--s~~~g~~e~~i~~lf~~A~~~-~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVI 678 (836)
++.+. ..+.|+.+..++.+|..+.+. .+.|||||||+.|.+.+...+.+...+ + |.-.+ .++.+.+|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n-~---Lkp~l------~~G~l~~I 320 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAAN-L---LKPAL------ARGELRTI 320 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHH-H---hhHHh------hCCCeEEE
Confidence 77665 357788899999999998754 578999999999987654333333221 1 22112 23678899
Q ss_pred eccCCC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHcCCCcH-----HHH
Q 003253 679 AATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMTDGYSG-----SDL 743 (836)
Q Consensus 679 aTTn~~-----~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~----~l~-~d~dl~~LA~~t~G~sg-----~DL 743 (836)
|||+.. ..+++++.||| ..|.|+.|+.+++.+||+.+.... ++. .+..+..++.++.+|.+ .--
T Consensus 321 gaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKA 399 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKA 399 (852)
T ss_pred EecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHH
Confidence 998863 35899999999 589999999999999987766532 222 46667888888887764 334
Q ss_pred HHHHHHHHHH
Q 003253 744 KNLCVTAAHR 753 (836)
Q Consensus 744 ~~L~~~A~~~ 753 (836)
..|+.+|+.+
T Consensus 400 Idlldea~a~ 409 (852)
T TIGR03345 400 VSLLDTACAR 409 (852)
T ss_pred HHHHHHHHHH
Confidence 4566666543
No 98
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.1e-13 Score=161.10 Aligned_cols=185 Identities=22% Similarity=0.244 Sum_probs=134.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|++++|++.+.+.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 5899999999999999998862 2344789999999999999999999998652
Q ss_pred ----------cceeeccccchhcccccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 597 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 597 ----------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
++.++.++ ...-..++.+...+.. ....|+||||+|.| +. ...+.|+.
T Consensus 79 ~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----S~-------~A~NALLK 140 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----ST-------HSFNALLK 140 (702)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----CH-------HHHHHHHH
Confidence 22222211 1122345555554432 24579999999988 21 22344554
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++.. +..+.+|.+|+.+..+.+.+++|+ .++.|..++.++..+.++.++.+.++. .+..+..|+..+.| +.+
T Consensus 141 tLEEP----P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP----PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC----CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 45442 245677777788888989999999 789999999999999999999988766 45567888888876 677
Q ss_pred HHHHHHHHHHH
Q 003253 742 DLKNLCVTAAH 752 (836)
Q Consensus 742 DL~~L~~~A~~ 752 (836)
++.+++..+..
T Consensus 215 dALnLLDQaIa 225 (702)
T PRK14960 215 DALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHH
Confidence 77777766553
No 99
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=2.2e-13 Score=156.86 Aligned_cols=182 Identities=18% Similarity=0.238 Sum_probs=127.6
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--------------- 595 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~--------------- 595 (836)
.+|+|++|++.+.+.|+..+.. .+.++++||+||||||||++|+++|+.+++
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 5899999999999999887763 234467999999999999999999999864
Q ss_pred ---------CcceeeccccchhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 596 ---------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 596 ---------~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
.++.++++. ...-..++.+.+.+... ...||||||+|.|. ....+.|+.
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LLk 139 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALLK 139 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHHH
Confidence 233333221 11123455555544422 34699999999882 112334444
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++.. +..+++|++|+.+..+.+++.+|+ ..+.|..++.++...+++..+...++. ++..+..|+..+.| ..+
T Consensus 140 ~LE~p----~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR 213 (472)
T PRK14962 140 TLEEP----PSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLR 213 (472)
T ss_pred HHHhC----CCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHH
Confidence 44432 245677767767788999999999 689999999999999999998877654 45567888888776 334
Q ss_pred HHHHHHHH
Q 003253 742 DLKNLCVT 749 (836)
Q Consensus 742 DL~~L~~~ 749 (836)
++.++++.
T Consensus 214 ~aln~Le~ 221 (472)
T PRK14962 214 DALTMLEQ 221 (472)
T ss_pred HHHHHHHH
Confidence 44444444
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.4e-13 Score=160.10 Aligned_cols=185 Identities=17% Similarity=0.193 Sum_probs=134.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|+|++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 5899999999999999998863 2334678999999999999999999999653
Q ss_pred ----------cceeeccccchhcccccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 597 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 597 ----------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
++.++.+. ...-..++.+.+.+.. ....|+||||+|.| +. ...+.++.
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l-----s~-------~a~naLLk 141 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML-----SG-------HSFNALLK 141 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc-----CH-------HHHHHHHH
Confidence 22232211 1122335555554432 23469999999988 21 22344555
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++.++.+.++. ++..+..++..+.| +.+
T Consensus 142 ~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 55442 345777777788888888999999 788999999999999999999888766 44557788888876 777
Q ss_pred HHHHHHHHHHH
Q 003253 742 DLKNLCVTAAH 752 (836)
Q Consensus 742 DL~~L~~~A~~ 752 (836)
++.++++.+..
T Consensus 216 ~al~lLdq~ia 226 (509)
T PRK14958 216 DALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHh
Confidence 88888876654
No 101
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.9e-13 Score=151.93 Aligned_cols=190 Identities=18% Similarity=0.194 Sum_probs=131.2
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce--eec------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN--ISM------ 602 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~--v~~------ 602 (836)
.+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.... -.|
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5799999999999999988762 2334678999999999999999999998642110 001
Q ss_pred c--------ccc--hhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 603 S--------SIT--SKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 603 s--------~l~--s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
. ++. .......-..++.+.+.+... ...|++|||+|.+ +. ...+.++..++..
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----~~-------~a~naLLk~lEe~- 146 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----SR-------HSFNALLKTLEEP- 146 (363)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----CH-------HHHHHHHHHHhcC-
Confidence 0 110 000001223455565554332 2469999999988 21 1233444444432
Q ss_pred ccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 003253 669 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
+..+.+|.+|+.++.+.+.+.+|+ ..+.|++|+.++..++++..+...+.. ++..+..++..+.| +.+++.+++
T Consensus 147 ---~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l 221 (363)
T PRK14961 147 ---PQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLL 221 (363)
T ss_pred ---CCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 245666777777888999999999 689999999999999999999887754 45567778888876 666777777
Q ss_pred HHHH
Q 003253 748 VTAA 751 (836)
Q Consensus 748 ~~A~ 751 (836)
+.+.
T Consensus 222 ~~~~ 225 (363)
T PRK14961 222 EHAI 225 (363)
T ss_pred HHHH
Confidence 6654
No 102
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.3e-13 Score=164.58 Aligned_cols=190 Identities=21% Similarity=0.224 Sum_probs=132.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcc-e-eecc-----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-N-ISMS----- 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i-~-v~~s----- 603 (836)
.+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+++.-. . ..|.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 5899999999999999988763 233456799999999999999999999976411 0 0010
Q ss_pred -ccch-------hccc---ccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 604 -SITS-------KWFG---EGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 604 -~l~s-------~~~g---~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
.+.. .+-+ ..-..++.+...+.. ....|+||||+|.| + ...++.|+..++.
T Consensus 80 ~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----T-------~eAqNALLKtLEE-- 145 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----S-------RSSFNALLKTLEE-- 145 (944)
T ss_pred HHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----C-------HHHHHHHHHHHhc--
Confidence 0000 0001 112235555544432 24569999999998 2 2334455555544
Q ss_pred ccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 003253 669 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
.+..+.+|.+|+.+..|.+.+++|+ .++.|..++.++..++|+..+...++. .+..+..|+..+.| +.+++.++|
T Consensus 146 --PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLL 221 (944)
T PRK14949 146 --PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLT 221 (944)
T ss_pred --cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 2356777777888888999999999 789999999999999999998877655 44557788888877 556666776
Q ss_pred HHHH
Q 003253 748 VTAA 751 (836)
Q Consensus 748 ~~A~ 751 (836)
..|.
T Consensus 222 dQal 225 (944)
T PRK14949 222 DQAI 225 (944)
T ss_pred HHHH
Confidence 6544
No 103
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.7e-13 Score=161.63 Aligned_cols=184 Identities=22% Similarity=0.279 Sum_probs=132.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc-------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------- 597 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~------------- 597 (836)
.+|++++|++.+.+.|+..+.. .+-++.+||+||+|+|||++|+++|+.+++..
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 5899999999999999988863 23335689999999999999999999996631
Q ss_pred -----------ceeeccccchhcccccHHHHHHHHHHHH----hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 598 -----------INISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 598 -----------i~v~~s~l~s~~~g~~e~~i~~lf~~A~----~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
+.++... ...-..++.+...+. .....|+||||+|.| +. ...+.|+.
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----s~-------~a~NALLK 141 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----SR-------HSFNALLK 141 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----CH-------HHHHHHHH
Confidence 1122111 011233555544443 224569999999988 22 23444555
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++. ++..+.+|.+|+.+..|.+.+++|+ ..+.|..++.++....|+..+...++. ++..+..|+..+.| +.+
T Consensus 142 tLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R 215 (647)
T PRK07994 142 TLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMR 215 (647)
T ss_pred HHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 5543 2356777777888899999999998 789999999999999999999877765 44557788888887 555
Q ss_pred HHHHHHHHHH
Q 003253 742 DLKNLCVTAA 751 (836)
Q Consensus 742 DL~~L~~~A~ 751 (836)
+..+++..|.
T Consensus 216 ~Al~lldqai 225 (647)
T PRK07994 216 DALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHH
Confidence 6656665543
No 104
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.53 E-value=1.7e-13 Score=155.01 Aligned_cols=222 Identities=21% Similarity=0.305 Sum_probs=142.0
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc-hhcccc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGE 612 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~--~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~-s~~~g~ 612 (836)
++|++.+++.|...+..+..+...... .....+..++||+||||||||++|+++|..++.||+.++++.+. ..|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 789999999998777544333221111 01223457899999999999999999999999999999998875 357776
Q ss_pred cH-HHHHHHHHH----HHhcCCceEEEccchhhhcCCCCCchH-H-HHHHHHHHHHHHhcCCc---------ccCcccEE
Q 003253 613 GE-KYVKAVFSL----ASKIAPSVIFVDEVDSMLGRRENPGEH-E-AMRKMKNEFMVNWDGLR---------TKDTERIL 676 (836)
Q Consensus 613 ~e-~~i~~lf~~----A~~~~psIL~IDEID~L~~~r~~~~~~-~-~~~~il~~ll~~ld~~~---------~~~~~~vl 676 (836)
.. ..+..++.. ..+..++||||||||.+.....++... . .-..+.+.|+..+++.. ..+....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 53 334544432 234578999999999997653222110 0 00134556666665431 11123455
Q ss_pred EEeccCCCC----------------------------------------------------CCcHHHHhhccccccCCCC
Q 003253 677 VLAATNRPF----------------------------------------------------DLDEAVIRRLPRRLMVNLP 704 (836)
Q Consensus 677 VIaTTn~~~----------------------------------------------------~Ld~~l~rRf~~~I~v~~P 704 (836)
+|+|+|-.. .+.|+++.|++.++.|...
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 666655410 1467888899999999999
Q ss_pred CHHHHHHHHHH----HHh-------hCCCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHH
Q 003253 705 DAPNRAKILQV----ILA-------KEDLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIKE 757 (836)
Q Consensus 705 ~~~eR~~Il~~----~l~-------~~~l~---~d~dl~~LA~~--t~G~sg~DL~~L~~~A~~~air~ 757 (836)
+.++..+|+.. +++ ..++. .+..++.|++. ..++-.+-|+.+++......+.+
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~ 381 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFE 381 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHh
Confidence 99999999973 332 22322 23335666664 33555667777776666655544
No 105
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.52 E-value=5.3e-13 Score=142.46 Aligned_cols=211 Identities=25% Similarity=0.401 Sum_probs=140.0
Q ss_pred ccchhhhchHHHHHH---HHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC---cceeeccc
Q 003253 531 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSS 604 (836)
Q Consensus 531 ~~~~di~G~~~vk~~---L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~---~i~v~~s~ 604 (836)
.+++|.+|++.+..+ |+.++.. ..+.+++|+||||||||+||+.|+....-+ |+.++...
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq--------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQ--------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHc--------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 467888888776533 4444431 233589999999999999999999988666 66666533
Q ss_pred cchhcccccHHHHHHHHHHHHhc-----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEe
Q 003253 605 ITSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 679 (836)
Q Consensus 605 l~s~~~g~~e~~i~~lf~~A~~~-----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIa 679 (836)
..-.-++.+|+.+++. ...|||||||+++ +..++ ..|+-. .+.+.|++|+
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----NksQQ-------D~fLP~------VE~G~I~lIG 255 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKSQQ-------DTFLPH------VENGDITLIG 255 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhhhh-------hcccce------eccCceEEEe
Confidence 2345688899888654 3579999999988 22111 122221 2346788887
Q ss_pred cc--CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC--------CCC------CcccHHHHHHHcCCCcHHHH
Q 003253 680 AT--NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--------DLS------PDVDFDAIANMTDGYSGSDL 743 (836)
Q Consensus 680 TT--n~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~--------~l~------~d~dl~~LA~~t~G~sg~DL 743 (836)
+| |....|..++++|+ +++.+...+.+....||.+-+.-. ++. ++.-++.|+..++|-....|
T Consensus 256 ATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 66 45677999999999 788889999999999998855411 111 12336788888888776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCc
Q 003253 744 KNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASV 804 (836)
Q Consensus 744 ~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~ 804 (836)
..| +.++.....| + +.....+|+.+|+++++..-..-+
T Consensus 335 N~L-ems~~m~~tr--------------~--------g~~~~~~lSidDvke~lq~s~~~Y 372 (554)
T KOG2028|consen 335 NAL-EMSLSMFCTR--------------S--------GQSSRVLLSIDDVKEGLQRSHILY 372 (554)
T ss_pred HHH-HHHHHHHHhh--------------c--------CCcccceecHHHHHHHHhhcccee
Confidence 433 2222211111 1 112335799999999998654333
No 106
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=5.4e-13 Score=153.20 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=137.6
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|+|++|++.+.+.|+..+.. .+.++++||+||+|+|||++|+.+|+.+++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 5899999999999999987763 3445789999999999999999999987432
Q ss_pred ----------cceeeccccchhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 597 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 597 ----------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
++.+++++ ...-..++.+.+.+... ...|++|||+|.| + ...++.|+.
T Consensus 77 ~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----s-------~~A~NaLLK 138 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----S-------NSAFNALLK 138 (491)
T ss_pred HHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----C-------HHHHHHHHH
Confidence 23333321 11234466666666433 3469999999988 2 123445555
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.++..+.++++. ++..+..|+..++| +.+
T Consensus 139 ~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR 212 (491)
T PRK14964 139 TLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMR 212 (491)
T ss_pred HHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55542 345777777788888999999999 679999999999999999999888766 45567888888876 777
Q ss_pred HHHHHHHHHHHH
Q 003253 742 DLKNLCVTAAHR 753 (836)
Q Consensus 742 DL~~L~~~A~~~ 753 (836)
++.++++.+...
T Consensus 213 ~alslLdqli~y 224 (491)
T PRK14964 213 NALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHh
Confidence 777777776643
No 107
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.52 E-value=3.7e-13 Score=153.68 Aligned_cols=180 Identities=25% Similarity=0.428 Sum_probs=125.6
Q ss_pred ccchhhhchHHHHHH---HHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 531 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 531 ~~~~di~G~~~vk~~---L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+++|++|++.+... |.+.+.. ....++||+||||||||++|+++|+.++.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 478999999998655 7777652 123589999999999999999999999999999887542
Q ss_pred hcccccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEecc--
Q 003253 608 KWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 681 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTT-- 681 (836)
....++.++..+.. ....||||||+|.+. ...+ +.++..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----~~~q-------~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----KAQQ-------DALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----HHHH-------HHHHHHhhc------CcEEEEEeCCC
Confidence 12345555555532 256899999999882 1111 223333322 345666554
Q ss_pred CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC--CC-C-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 682 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE--DL-S-PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 682 n~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~--~l-~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
|....+++++++|| ..+.++.++.++...+++..+... ++ . .+..++.++..+.| ..+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 33457899999999 789999999999999999987652 22 2 33446777887755 5556666666654
No 108
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=6.9e-13 Score=155.86 Aligned_cols=192 Identities=20% Similarity=0.234 Sum_probs=136.9
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcc--eeecc-----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI--NISMS----- 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i--~v~~s----- 603 (836)
.+|+|++|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++.-. ...|.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 5899999999999999998863 234578999999999999999999999865311 01111
Q ss_pred ---------ccc--hhcccccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 604 ---------SIT--SKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 604 ---------~l~--s~~~g~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
++. ..........++.++..+.. ....||||||+|.| + ....+.|+..++..
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----s-------~~A~NALLKtLEEP- 146 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----S-------KSAFNAMLKTLEEP- 146 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----C-------HHHHHHHHHHHHhC-
Confidence 010 00011223356666665432 23479999999987 2 12234455555442
Q ss_pred ccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 003253 669 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
...+.+|.+|+.+..+.+.+++|| ..+.|..++.++...+++.++.++++. ++..+..|++.+.| +.+++.+++
T Consensus 147 ---p~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLL 221 (709)
T PRK08691 147 ---PEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLL 221 (709)
T ss_pred ---CCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHH
Confidence 245677778888999999999999 778999999999999999999988765 44557888888865 777888888
Q ss_pred HHHHHH
Q 003253 748 VTAAHR 753 (836)
Q Consensus 748 ~~A~~~ 753 (836)
..+...
T Consensus 222 Dqaia~ 227 (709)
T PRK08691 222 DQAIAL 227 (709)
T ss_pred HHHHHh
Confidence 776643
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.50 E-value=1.3e-13 Score=169.46 Aligned_cols=163 Identities=21% Similarity=0.365 Sum_probs=124.3
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCcceee
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 601 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~ 601 (836)
.++.++|.+.....+.+.+.. +...+++|+||||+|||++|+++|..+ +.+++.++
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 466789998876666655541 223579999999999999999999987 67888888
Q ss_pred ccccc--hhcccccHHHHHHHHHHHHh-cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEE
Q 003253 602 MSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 678 (836)
Q Consensus 602 ~s~l~--s~~~g~~e~~i~~lf~~A~~-~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVI 678 (836)
+..+. .++.|+.+..++.+|..+.+ ..++||||||++.|.+.....+.....+.+ .. .+ .++.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~l-kp---~l------~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNML-KP---AL------ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHh-cc---hh------hcCCCeEE
Confidence 88765 45778899999999988654 468899999999998765443333322221 11 11 24678999
Q ss_pred eccCCCC-----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh
Q 003253 679 AATNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK 719 (836)
Q Consensus 679 aTTn~~~-----~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~ 719 (836)
|+|+..+ .+|+++.|||. .|.++.|+.+++..|++.+...
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 9998765 48999999995 6889999999999999887654
No 110
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.50 E-value=2.7e-13 Score=166.88 Aligned_cols=184 Identities=22% Similarity=0.359 Sum_probs=138.9
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCcceee
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 601 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~ 601 (836)
.++.++|.++..+.+.+.+.. +..++++|+||||||||++|+++|..+ +.+++.++
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 467789999998888887652 234689999999999999999999987 36788899
Q ss_pred ccccc--hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEe
Q 003253 602 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 679 (836)
Q Consensus 602 ~s~l~--s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIa 679 (836)
++.+. .+|.|+.+..++.+++.+....+.|||||||+.|++.....+..... .++.. .+ .++.+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a-~lLkp---~l------~rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA-NILKP---AL------ARGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH-HHhHH---HH------hCCCcEEEE
Confidence 88775 46788899999999999988888999999999998765433322222 22221 11 235688888
Q ss_pred ccCCCC-----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh----CCCC-CcccHHHHHHHcCCCcH
Q 003253 680 ATNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMTDGYSG 740 (836)
Q Consensus 680 TTn~~~-----~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~----~~l~-~d~dl~~LA~~t~G~sg 740 (836)
+|+..+ ..++++.+||. .|.++.|+.++...|++.+... .++. ++..+..++.++.+|.+
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 888653 47899999994 6899999999999999876532 2232 44557777888887764
No 111
>PLN03025 replication factor C subunit; Provisional
Probab=99.50 E-value=5.5e-13 Score=147.25 Aligned_cols=180 Identities=22% Similarity=0.239 Sum_probs=123.3
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----Ccceeecccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSI 605 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~-----~~i~v~~s~l 605 (836)
.++++++|++++.+.|+.++.. ....++||+||||||||++|+++|+++.. .++.++.++.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~--------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARD--------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 5799999999999999887652 11247999999999999999999999822 3455555442
Q ss_pred chhcccccHHHHHHHHHHH-Hh------cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEE
Q 003253 606 TSKWFGEGEKYVKAVFSLA-SK------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 678 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A-~~------~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVI 678 (836)
.+ ...++...... .. ..+.||+|||+|.| ....+.++.++ ++.. .....+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----t~~aq~aL~~~-------lE~~----~~~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----TSGAQQALRRT-------MEIY----SNTTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----CHHHHHHHHHH-------Hhcc----cCCceEE
Confidence 21 11233332221 11 23579999999998 32233333332 2221 1234566
Q ss_pred eccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 003253 679 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCV 748 (836)
Q Consensus 679 aTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~ 748 (836)
.+||....+.+++++|+ ..+.|+.|+.++....++..++++++. ++..+..++..+.| ..+.+.+.++
T Consensus 134 l~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 134 LACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred EEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 67888888999999998 689999999999999999999888765 45567888887766 3344444444
No 112
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.49 E-value=3.1e-13 Score=150.33 Aligned_cols=177 Identities=26% Similarity=0.389 Sum_probs=127.7
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch-hccc-cc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-EG 613 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s-~~~g-~~ 613 (836)
++|+++.++.+...+.....+...........+++++||+||||||||++|+++|..++.+|+.+++..+.. .|.| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 789999999998887754433322111111234589999999999999999999999999999999987763 6777 45
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 003253 614 EKYVKAVFSLAS-------------------------------------------------------------------- 625 (836)
Q Consensus 614 e~~i~~lf~~A~-------------------------------------------------------------------- 625 (836)
+..++.+|..|.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 666666665540
Q ss_pred -----------------------------------------------------------------------hcCCceEEE
Q 003253 626 -----------------------------------------------------------------------KIAPSVIFV 634 (836)
Q Consensus 626 -----------------------------------------------------------------------~~~psIL~I 634 (836)
..+.+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 124579999
Q ss_pred ccchhhhcCCCCCchHHHH-HHHHHHHHHHhcCCcc------cCcccEEEEecc----CCCCCCcHHHHhhccccccCCC
Q 003253 635 DEVDSMLGRRENPGEHEAM-RKMKNEFMVNWDGLRT------KDTERILVLAAT----NRPFDLDEAVIRRLPRRLMVNL 703 (836)
Q Consensus 635 DEID~L~~~r~~~~~~~~~-~~il~~ll~~ld~~~~------~~~~~vlVIaTT----n~~~~Ld~~l~rRf~~~I~v~~ 703 (836)
||||.++.+..+.+ .... .-+.+.||..+.|... -+..++++||+. ..|.+|-|+|.-||+.++.+..
T Consensus 254 DEiDKIa~~~~~~~-~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 254 DEIDKIAKKGESSG-ADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EchhhhcccCCCCC-CCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 99999986542111 1111 2355666666666321 234678898875 3577888999999999999999
Q ss_pred CCHHHHHHHH
Q 003253 704 PDAPNRAKIL 713 (836)
Q Consensus 704 P~~~eR~~Il 713 (836)
++.++...||
T Consensus 333 L~~edL~rIL 342 (441)
T TIGR00390 333 LTTDDFERIL 342 (441)
T ss_pred CCHHHHHHHh
Confidence 9999999988
No 113
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.49 E-value=3.6e-13 Score=166.24 Aligned_cols=196 Identities=21% Similarity=0.341 Sum_probs=140.4
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCcceee
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 601 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~ 601 (836)
.++.++|.+...+.+.+.+.. +..++++|+||||+|||++|+++|..+ +.+++.++
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 466789998876666665541 233578999999999999999999886 56778888
Q ss_pred ccccc--hhcccccHHHHHHHHHHHHhc-CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEE
Q 003253 602 MSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 678 (836)
Q Consensus 602 ~s~l~--s~~~g~~e~~i~~lf~~A~~~-~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVI 678 (836)
+..+. ..|.|+.+..++.+|..+.+. .+.|||||||+.|++.....+..... +.+...+ .+..+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----~~Lk~~l------~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAG----NMLKPAL------ARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHH----HHhchhh------hcCceEEE
Confidence 77764 467788899999999988764 58999999999998654333222222 2221111 23678999
Q ss_pred eccCCC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-----CcccHHHHHHHcCCCcH-----HHH
Q 003253 679 AATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-----PDVDFDAIANMTDGYSG-----SDL 743 (836)
Q Consensus 679 aTTn~~-----~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-----~d~dl~~LA~~t~G~sg-----~DL 743 (836)
++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+....... .+..+..++.++.+|.. .--
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkA 385 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKA 385 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHH
Confidence 998875 358999999994 68999999999999999886654322 34456677777776653 333
Q ss_pred HHHHHHHHH
Q 003253 744 KNLCVTAAH 752 (836)
Q Consensus 744 ~~L~~~A~~ 752 (836)
..|+.+|+.
T Consensus 386 idlld~a~a 394 (852)
T TIGR03346 386 IDLIDEAAA 394 (852)
T ss_pred HHHHHHHHH
Confidence 445555543
No 114
>PRK04195 replication factor C large subunit; Provisional
Probab=99.49 E-value=5.1e-13 Score=155.49 Aligned_cols=182 Identities=26% Similarity=0.365 Sum_probs=129.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 610 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~ 610 (836)
.++++++|++.+++.|+.++.... + ..+.+++||+||||+|||++|+++|++++++++.+++++....
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~-- 78 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA-- 78 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH--
Confidence 579999999999999999886322 1 2345789999999999999999999999999999998764321
Q ss_pred cccHHHHHHHHHHHHh------cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 611 GEGEKYVKAVFSLASK------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 611 g~~e~~i~~lf~~A~~------~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
..+..+...+.. ..+.||+|||+|.+.+..+ .. ..+.++..++. .+..+|+++|.+
T Consensus 79 ----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~----~~~aL~~~l~~------~~~~iIli~n~~ 140 (482)
T PRK04195 79 ----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RG----GARAILELIKK------AKQPIILTANDP 140 (482)
T ss_pred ----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hh----HHHHHHHHHHc------CCCCEEEeccCc
Confidence 223333332222 2467999999999853211 11 12233333332 223456678888
Q ss_pred CCCcH-HHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHH
Q 003253 685 FDLDE-AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDL 743 (836)
Q Consensus 685 ~~Ld~-~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL 743 (836)
..+.+ .+++|+ ..+.|+.|+..++..+++.++...++. ++..++.|+..+.|-....+
T Consensus 141 ~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 141 YDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred cccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 88887 666666 689999999999999999999887765 45567888888776444333
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.49 E-value=1.4e-12 Score=150.56 Aligned_cols=170 Identities=19% Similarity=0.307 Sum_probs=113.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 644 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r 644 (836)
++++||||||+|||+|++++++++ +..++++++.++...+..........-|....+ .+.+|+||||+.+.++.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 569999999999999999999988 456788888776554433221111122322222 46899999999884332
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhh
Q 003253 645 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAK 719 (836)
Q Consensus 645 ~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~---Ld~~l~rRf~--~~I~v~~P~~~eR~~Il~~~l~~ 719 (836)
..++.+..+++.+. .. .+.+||+++..|.. +++.+.+||. ..+.+..|+.++|..|++..+..
T Consensus 228 ---~~~~~l~~~~n~l~-------~~--~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ---RTQEEFFHTFNALH-------EA--GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ---HHHHHHHHHHHHHH-------HC--CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 11222222333222 11 23456666556554 6789999995 47889999999999999999987
Q ss_pred CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 720 EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 720 ~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
.++. ++..++.||....| +.++|..++......
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAY 329 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHH
Confidence 6554 45567888888776 666776666655443
No 116
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=8.6e-13 Score=152.65 Aligned_cols=191 Identities=19% Similarity=0.231 Sum_probs=135.9
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce------e----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN------I---- 600 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~------v---- 600 (836)
.+|+|++|++.+.+.|+..+.. .+.++++||+||+|+|||++|+++|+.+++.-.. .
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 5899999999999999887752 2345789999999999999999999999653110 0
Q ss_pred --ecc--------ccc--hhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHh
Q 003253 601 --SMS--------SIT--SKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 664 (836)
Q Consensus 601 --~~s--------~l~--s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~l 664 (836)
+|. ++. ..........++.+++.+... ...|+||||++.+. ....+.|+..+
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~naLLk~L 152 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFNALLKTL 152 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHHHHHHHH
Confidence 011 110 000112344567777766543 34699999999882 12234444444
Q ss_pred cCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHH
Q 003253 665 DGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDL 743 (836)
Q Consensus 665 d~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL 743 (836)
+. .+..+++|.+|+.++.+.+.+.+|+ ..+.|..++.++...+++..+.+.+.. ++..+..|+..++| +.+++
T Consensus 153 Ee----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~a 226 (507)
T PRK06645 153 EE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDA 226 (507)
T ss_pred hh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 43 2356677777788888999999999 678999999999999999999988765 44557888888877 66777
Q ss_pred HHHHHHHHH
Q 003253 744 KNLCVTAAH 752 (836)
Q Consensus 744 ~~L~~~A~~ 752 (836)
.++++.+..
T Consensus 227 l~~Ldkai~ 235 (507)
T PRK06645 227 VSILDQAAS 235 (507)
T ss_pred HHHHHHHHH
Confidence 777766644
No 117
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.4e-12 Score=153.71 Aligned_cols=191 Identities=19% Similarity=0.219 Sum_probs=133.2
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc------ce-ee--
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------IN-IS-- 601 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~------i~-v~-- 601 (836)
.+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++.- .. -.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 5899999999999999998863 23346789999999999999999999986520 00 00
Q ss_pred ----cc--------ccch--hcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHH
Q 003253 602 ----MS--------SITS--KWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 663 (836)
Q Consensus 602 ----~s--------~l~s--~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ 663 (836)
|. ++.. ......-..++.+.+.+... ...|++|||+|.|. ....+.|+..
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a~NaLLKt 147 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTAFNAMLKT 147 (618)
T ss_pred ccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHHHHHHHHh
Confidence 10 1100 00011223456666554432 24699999999882 1224445555
Q ss_pred hcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHH
Q 003253 664 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSD 742 (836)
Q Consensus 664 ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~D 742 (836)
++. ....+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.++..+.+.++. ++..+..|+..+.| +.++
T Consensus 148 LEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~ 221 (618)
T PRK14951 148 LEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRD 221 (618)
T ss_pred ccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 543 2355677777778888888999999 789999999999999999999888776 44557888888887 6777
Q ss_pred HHHHHHHHHH
Q 003253 743 LKNLCVTAAH 752 (836)
Q Consensus 743 L~~L~~~A~~ 752 (836)
+.+++..+..
T Consensus 222 al~lLdq~ia 231 (618)
T PRK14951 222 ALSLTDQAIA 231 (618)
T ss_pred HHHHHHHHHH
Confidence 7777765543
No 118
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.48 E-value=2.3e-12 Score=146.94 Aligned_cols=169 Identities=21% Similarity=0.332 Sum_probs=111.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeeccccchhcccccHH-HHHHHHHHHHhcCCceEEEccchhhhcC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVIFVDEVDSMLGR 643 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l~s~~~g~~e~-~i~~lf~~A~~~~psIL~IDEID~L~~~ 643 (836)
+.++||||+|+|||+|++++++++ +..++++++.++...+...... .+.. |....+ .+.+|+||||+.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEE-FKEKYR-SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHH-HHHHHH-hCCEEEEehhhhhcCC
Confidence 579999999999999999999987 5678888887765443322110 1112 222222 3579999999988533
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC---CcHHHHhhccc--cccCCCCCHHHHHHHHHHHHh
Q 003253 644 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLPR--RLMVNLPDAPNRAKILQVILA 718 (836)
Q Consensus 644 r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~---Ld~~l~rRf~~--~I~v~~P~~~eR~~Il~~~l~ 718 (836)
. ..++.+..+++.+. .. .+.+||+++..|.. +++.+.+||.. .+.++.|+.++|..|++..+.
T Consensus 215 ~---~~~~~l~~~~n~~~-------~~--~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 215 E---RTQEEFFHTFNALH-------EN--GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred H---HHHHHHHHHHHHHH-------HC--CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 2 11222222232221 11 23455655555544 56889999964 689999999999999999998
Q ss_pred hCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 719 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 719 ~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
..++. ++..++.||....+ +.++|..++......
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAY 317 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 77665 55567888888765 667777766655443
No 119
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.48 E-value=4e-13 Score=149.48 Aligned_cols=177 Identities=23% Similarity=0.372 Sum_probs=127.6
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch-hccc-cc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-EG 613 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s-~~~g-~~ 613 (836)
++|++.+++.+...+.....+...........++.++||+||||+|||++|++||+.++.+|+.++++.+.. .|.| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 789999999998888654333222111111123489999999999999999999999999999999988764 6777 44
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 003253 614 EKYVKAVFSLAS-------------------------------------------------------------------- 625 (836)
Q Consensus 614 e~~i~~lf~~A~-------------------------------------------------------------------- 625 (836)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 566666666551
Q ss_pred --------------------------------------------------------------------h--cCCceEEEc
Q 003253 626 --------------------------------------------------------------------K--IAPSVIFVD 635 (836)
Q Consensus 626 --------------------------------------------------------------------~--~~psIL~ID 635 (836)
. ...+|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 134699999
Q ss_pred cchhhhcCCCCCchHHHH-HHHHHHHHHHhcCCcc------cCcccEEEEecc----CCCCCCcHHHHhhccccccCCCC
Q 003253 636 EVDSMLGRRENPGEHEAM-RKMKNEFMVNWDGLRT------KDTERILVLAAT----NRPFDLDEAVIRRLPRRLMVNLP 704 (836)
Q Consensus 636 EID~L~~~r~~~~~~~~~-~~il~~ll~~ld~~~~------~~~~~vlVIaTT----n~~~~Ld~~l~rRf~~~I~v~~P 704 (836)
|||.++.+..+. ..... .-+.+.||..+.|... -+..++++||+. ..|.+|-|+|.-||+.++.+..+
T Consensus 257 EiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 257 EIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred cchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 999998664321 11111 2355667766666321 234678998875 35778889999999999999999
Q ss_pred CHHHHHHHH
Q 003253 705 DAPNRAKIL 713 (836)
Q Consensus 705 ~~~eR~~Il 713 (836)
+.++...||
T Consensus 336 ~~~dL~~IL 344 (443)
T PRK05201 336 TEEDFVRIL 344 (443)
T ss_pred CHHHHHHHh
Confidence 999999988
No 120
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.48 E-value=6.3e-13 Score=149.78 Aligned_cols=192 Identities=16% Similarity=0.228 Sum_probs=126.5
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce-ee---------
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-IS--------- 601 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~-v~--------- 601 (836)
.|++|+|++.+++.|++.+..+...+..+ + .+.++++||+||+|+|||++|+++|..+.+.-.. -.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58999999999999999998543322211 1 1245789999999999999999999988553210 00
Q ss_pred -----ccccch---hcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcc
Q 003253 602 -----MSSITS---KWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 669 (836)
Q Consensus 602 -----~s~l~s---~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~ 669 (836)
.+++.- ....-.-..++.+++.+... ...|+||||+|.| +. ...+.|+..++..
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m-----~~-------~aanaLLk~LEep-- 144 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL-----TE-------RAANALLKAVEEP-- 144 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc-----CH-------HHHHHHHHHhhcC--
Confidence 111100 00011123477788777653 3369999999999 21 1224455555442
Q ss_pred cCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHH
Q 003253 670 KDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCV 748 (836)
Q Consensus 670 ~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~ 748 (836)
+.++++|.+|+.++.+.+.+++|+ ..+.|+.|+.++..+++... .++. ......++..+.|..+..+..+..
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHHHhcC
Confidence 233445555555899999999999 78999999999887777632 2333 445677889999988866655433
No 121
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.6e-13 Score=154.37 Aligned_cols=172 Identities=22% Similarity=0.335 Sum_probs=128.4
Q ss_pred hhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc--------
Q 003253 534 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-------- 605 (836)
Q Consensus 534 ~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l-------- 605 (836)
.|-.|++++|+++.+++.-+.... .... .-++|+||||+|||+|++.||+.++..|++++...+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~------~~kG--pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK------KLKG--PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc------cCCC--cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 356899999999999886432221 1111 368999999999999999999999999999987554
Q ss_pred -chhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHH-----HHHHHhcCCcccCcccEEEEe
Q 003253 606 -TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKN-----EFMVNWDGLRTKDTERILVLA 679 (836)
Q Consensus 606 -~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~-----~ll~~ld~~~~~~~~~vlVIa 679 (836)
...|+|...+.+-+-...|....| |++|||||.|... .......++..++. .|....-.... +-.+|++|+
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFia 471 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIA 471 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEe
Confidence 224888888888888888887665 8899999999543 22222233333331 12222111111 236899999
Q ss_pred ccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHH
Q 003253 680 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL 717 (836)
Q Consensus 680 TTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l 717 (836)
|+|..+.++..++.|+ .+|.+.-++.++..+|.+.+|
T Consensus 472 TANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 472 TANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 9999999999999999 799999999999999998876
No 122
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.47 E-value=2.3e-12 Score=144.66 Aligned_cols=202 Identities=18% Similarity=0.217 Sum_probs=127.1
Q ss_pred hhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CCcceeeccc
Q 003253 534 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 604 (836)
Q Consensus 534 ~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~---------~~~i~v~~s~ 604 (836)
+++.|.+...+.|...+...+. ...+.+++|+||||||||++++++++++. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~----------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR----------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4688999988888887753111 12235799999999999999999998762 5678888865
Q ss_pred cch----------hcc--cc--------cHHHHHHHHHHHHh-cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHH
Q 003253 605 ITS----------KWF--GE--------GEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 663 (836)
Q Consensus 605 l~s----------~~~--g~--------~e~~i~~lf~~A~~-~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ 663 (836)
..+ ... |. .......++..... ..+.||+|||+|.+.+.. ..++.+++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhcc
Confidence 321 111 11 12223444544432 356799999999996221 1233344332
Q ss_pred hcCCcccCcccEEEEeccCCCC---CCcHHHHhhcc-ccccCCCCCHHHHHHHHHHHHhhC---CCCCcccHHHHHH---
Q 003253 664 WDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIAN--- 733 (836)
Q Consensus 664 ld~~~~~~~~~vlVIaTTn~~~---~Ld~~l~rRf~-~~I~v~~P~~~eR~~Il~~~l~~~---~l~~d~dl~~LA~--- 733 (836)
.+. ....+.++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+... ....+..++.++.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111236788899998875 47888888885 578999999999999999988631 1122222334433
Q ss_pred HcCCCcHHHHHHHHHHHHHHHHH
Q 003253 734 MTDGYSGSDLKNLCVTAAHRPIK 756 (836)
Q Consensus 734 ~t~G~sg~DL~~L~~~A~~~air 756 (836)
.+.|. .+...++|..|+..+..
T Consensus 235 ~~~Gd-~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 235 QEHGD-ARKAIDLLRVAGEIAER 256 (365)
T ss_pred HhcCC-HHHHHHHHHHHHHHHHH
Confidence 33454 34445677777765543
No 123
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.5e-12 Score=151.59 Aligned_cols=185 Identities=21% Similarity=0.273 Sum_probs=130.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|++++|++.+.+.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 5799999999999999988863 2334669999999999999999999988641
Q ss_pred ----------cceeeccccchhcccccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 597 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 597 ----------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
++.++... . ..-..++.+...+.. ....|+||||+|.| +. ...+.|+.
T Consensus 80 ~~i~~~~~~dlieidaas----~--~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----s~-------~a~naLLK 141 (546)
T PRK14957 80 VAINNNSFIDLIEIDAAS----R--TGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-----SK-------QSFNALLK 141 (546)
T ss_pred HHHhcCCCCceEEeeccc----c--cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----cH-------HHHHHHHH
Confidence 11121110 0 111234455544432 24569999999988 22 23344555
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+.+.++. ++..+..|+..+.| +.+
T Consensus 142 ~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR 215 (546)
T PRK14957 142 TLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLR 215 (546)
T ss_pred HHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55442 245666666677888888899999 789999999999999999998887765 44556778888765 666
Q ss_pred HHHHHHHHHHH
Q 003253 742 DLKNLCVTAAH 752 (836)
Q Consensus 742 DL~~L~~~A~~ 752 (836)
++.++++.+..
T Consensus 216 ~alnlLek~i~ 226 (546)
T PRK14957 216 DALSLLDQAIS 226 (546)
T ss_pred HHHHHHHHHHH
Confidence 77777766553
No 124
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.4e-12 Score=152.55 Aligned_cols=191 Identities=19% Similarity=0.226 Sum_probs=133.9
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcc-e-eecc-----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-N-ISMS----- 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i-~-v~~s----- 603 (836)
.+|++++|++.+.+.|...+.. .+.++.+||+||+|+|||++|+++|+.+++... . -.|.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 5899999999999999988863 234467899999999999999999999965311 0 0110
Q ss_pred ---------ccc--hhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 604 ---------SIT--SKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 604 ---------~l~--s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
++. ..........++.+.+.+... ...|+||||+|.|. ....+.|+..++..
T Consensus 80 ~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLLK~LEep- 146 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAMLKTLEEP- 146 (527)
T ss_pred HHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHHHHHhCC-
Confidence 000 000011233466666665432 34699999999882 12334555555542
Q ss_pred ccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 003253 669 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++..+.+...+.++++. ++..+..|+..+.| +.++..+++
T Consensus 147 ---p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~ll 221 (527)
T PRK14969 147 ---PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLL 221 (527)
T ss_pred ---CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 355677777777888888899999 789999999999999999999887765 34456778888765 667777777
Q ss_pred HHHHH
Q 003253 748 VTAAH 752 (836)
Q Consensus 748 ~~A~~ 752 (836)
+.|..
T Consensus 222 dqai~ 226 (527)
T PRK14969 222 DQAIA 226 (527)
T ss_pred HHHHH
Confidence 76654
No 125
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=3.1e-12 Score=150.72 Aligned_cols=185 Identities=24% Similarity=0.323 Sum_probs=134.2
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|++++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|+.+.+.
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 5899999999999999998863 2344679999999999999999999998532
Q ss_pred ----------cceeeccccchhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 597 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 597 ----------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
++.++.+. +.....++.+.+.+... ...|++|||+|.|. ....+.|+.
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLLK 141 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALLK 141 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHH
Confidence 22222211 12234566666665532 34699999999882 123445555
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++.. +..+++|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++..+.+.++. ++..+..++..+.| +.+
T Consensus 142 tLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55442 345677767778899999999999 578999999999999999999888765 44557788888876 666
Q ss_pred HHHHHHHHHHH
Q 003253 742 DLKNLCVTAAH 752 (836)
Q Consensus 742 DL~~L~~~A~~ 752 (836)
+..+++..+..
T Consensus 216 ~al~~Ldq~~~ 226 (559)
T PRK05563 216 DALSILDQAIS 226 (559)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 126
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.46 E-value=1.1e-12 Score=138.21 Aligned_cols=182 Identities=24% Similarity=0.335 Sum_probs=127.3
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC------cceeeccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMSS 604 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~------~i~v~~s~ 604 (836)
.+|+++.|++.+.+.|...+.. +-..++|||||||||||+.|+++|.++..+ +...+.++
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 5899999999999999998862 122489999999999999999999999652 33334444
Q ss_pred cchhcccc-cHHHHHHHHHHH-----HhcCC-ceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEE
Q 003253 605 ITSKWFGE-GEKYVKAVFSLA-----SKIAP-SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 677 (836)
Q Consensus 605 l~s~~~g~-~e~~i~~lf~~A-----~~~~p-sIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlV 677 (836)
-.+..++. .-+....+...- +-.+| .||+|||.|.| ....+.++++++..+ ...+.+
T Consensus 99 erGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----tsdaq~aLrr~mE~~-----------s~~trF 162 (346)
T KOG0989|consen 99 ERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----TSDAQAALRRTMEDF-----------SRTTRF 162 (346)
T ss_pred cccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh-----hHHHHHHHHHHHhcc-----------ccceEE
Confidence 33322111 001111111111 11122 69999999999 334455555554432 356788
Q ss_pred EeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHH
Q 003253 678 LAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDL 743 (836)
Q Consensus 678 IaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL 743 (836)
|..||..+.+...+.+|+ ..+.|+....+.....|+.+..++++. ++..+..++..++|--.+.+
T Consensus 163 iLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ai 228 (346)
T KOG0989|consen 163 ILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAI 228 (346)
T ss_pred EEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 888999999999999999 578898888889999999999999887 44557888888777544433
No 127
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.46 E-value=2.8e-12 Score=142.14 Aligned_cols=186 Identities=20% Similarity=0.249 Sum_probs=121.3
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CCcceeecccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 605 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~-----~~~i~v~~s~l 605 (836)
.+|++++|++.+++.|...+.. ....++||+||||||||++|+++++++. .+++.+++.++
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~--------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS--------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 5689999999999999987752 1123799999999999999999999883 34677777664
Q ss_pred chhc-------------ccc-------cHHHHHHHHHHHHh-----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHH
Q 003253 606 TSKW-------------FGE-------GEKYVKAVFSLASK-----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 660 (836)
Q Consensus 606 ~s~~-------------~g~-------~e~~i~~lf~~A~~-----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~l 660 (836)
.... .+. ....++.+...... ..+.+|+|||+|.+. ...+ +.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~~~-------~~L 145 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----EDAQ-------QAL 145 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HHHH-------HHH
Confidence 3221 000 01122333222222 234699999999872 1111 222
Q ss_pred HHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCc
Q 003253 661 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 739 (836)
Q Consensus 661 l~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~s 739 (836)
...++... ....+|.+++.+..+.+.+.+|+ ..+.+.+|+.++...+++..+.+.++. ++..+..|+..+.| +
T Consensus 146 ~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-d 219 (337)
T PRK12402 146 RRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-D 219 (337)
T ss_pred HHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 22333221 22344555656667778888898 678999999999999999998887765 55567788887743 4
Q ss_pred HHHHHHHHH
Q 003253 740 GSDLKNLCV 748 (836)
Q Consensus 740 g~DL~~L~~ 748 (836)
.+++.+.++
T Consensus 220 lr~l~~~l~ 228 (337)
T PRK12402 220 LRKAILTLQ 228 (337)
T ss_pred HHHHHHHHH
Confidence 444444333
No 128
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2.3e-12 Score=149.65 Aligned_cols=184 Identities=21% Similarity=0.286 Sum_probs=130.7
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|+|++|++.+++.|+..+.. .+.++.+||+||||||||++|+++|+.+.+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 5899999999999999998863 2334567999999999999999999998531
Q ss_pred ---------cceeeccccchhcccccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHH
Q 003253 597 ---------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 663 (836)
Q Consensus 597 ---------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ 663 (836)
++.++... ...-..++.+...+.. ..+.||||||+|.+. ...++.++..
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk~ 139 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLKT 139 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHHH
Confidence 22222210 1112335555444432 245799999999771 1233445554
Q ss_pred hcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHH
Q 003253 664 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSD 742 (836)
Q Consensus 664 ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~D 742 (836)
++.. ...+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++..+.+.++. ++..+..|+..+.| ..++
T Consensus 140 LEep----~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~ 213 (504)
T PRK14963 140 LEEP----PEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRD 213 (504)
T ss_pred HHhC----CCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 4432 245677777888899999999998 579999999999999999999888766 44557788888876 4555
Q ss_pred HHHHHHHHH
Q 003253 743 LKNLCVTAA 751 (836)
Q Consensus 743 L~~L~~~A~ 751 (836)
+.++++.+.
T Consensus 214 aln~Lekl~ 222 (504)
T PRK14963 214 AESLLERLL 222 (504)
T ss_pred HHHHHHHHH
Confidence 656665543
No 129
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.44 E-value=4.4e-12 Score=143.97 Aligned_cols=226 Identities=18% Similarity=0.197 Sum_probs=142.5
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeeccccc
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSIT 606 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l~ 606 (836)
..+.+.|.++..++|...+...+. ...+.+++|+||||+|||++++.+++++ ++.+++++|....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 345678888888888877753111 1223579999999999999999999887 4778888886432
Q ss_pred h----------hccc--------ccHHHHHHHHHHHHh-cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCC
Q 003253 607 S----------KWFG--------EGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 667 (836)
Q Consensus 607 s----------~~~g--------~~e~~i~~lf~~A~~-~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~ 667 (836)
+ ...+ .....+..+.....+ ..+.||+|||+|.+..... ...+..++..+...
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~--------~~~l~~l~~~~~~~ 169 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG--------NDVLYSLLRAHEEY 169 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC--------chHHHHHHHhhhcc
Confidence 1 1111 112233333333333 3467999999999962111 12344444444433
Q ss_pred cccCcccEEEEeccCCCC---CCcHHHHhhcc-ccccCCCCCHHHHHHHHHHHHhhC---CCCCcccHHHHHHHcCCCc-
Q 003253 668 RTKDTERILVLAATNRPF---DLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIANMTDGYS- 739 (836)
Q Consensus 668 ~~~~~~~vlVIaTTn~~~---~Ld~~l~rRf~-~~I~v~~P~~~eR~~Il~~~l~~~---~l~~d~dl~~LA~~t~G~s- 739 (836)
. ..++.+|+++|... .+++.+.+||. ..+.|++++.++..+|++..+... ....+..++.+++.+.+.+
T Consensus 170 ~---~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 170 P---GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred C---CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 2 23688888888753 47788888874 568999999999999999987642 1223444677777774322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCc
Q 003253 740 -GSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASV 804 (836)
Q Consensus 740 -g~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~ 804 (836)
.+.+..+|..|+..+..+ ....|+.+|+..|++.+.++.
T Consensus 247 d~r~a~~ll~~a~~~a~~~--------------------------~~~~I~~~~v~~a~~~~~~~~ 286 (394)
T PRK00411 247 DARVAIDLLRRAGLIAERE--------------------------GSRKVTEEDVRKAYEKSEIVH 286 (394)
T ss_pred cHHHHHHHHHHHHHHHHHc--------------------------CCCCcCHHHHHHHHHHHHHHH
Confidence 334446666665544322 123588888888888775443
No 130
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.44 E-value=1.7e-12 Score=146.31 Aligned_cols=222 Identities=21% Similarity=0.307 Sum_probs=139.5
Q ss_pred hhchHHHHHHHHHHHhccccChhhhh-c---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc-hhcc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFC-K---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWF 610 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~-~---~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~-s~~~ 610 (836)
++|++.+++.+...+.....+..... . .+......++||+||||||||++|+++|..++.||..+++..+. ..|.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 68999999999887754333321100 0 01112246899999999999999999999999999999988764 3577
Q ss_pred ccc-HHHHHHHHHH----HHhcCCceEEEccchhhhcCCCCCchH-HHH-HHHHHHHHHHhcCCcc---------cCccc
Q 003253 611 GEG-EKYVKAVFSL----ASKIAPSVIFVDEVDSMLGRRENPGEH-EAM-RKMKNEFMVNWDGLRT---------KDTER 674 (836)
Q Consensus 611 g~~-e~~i~~lf~~----A~~~~psIL~IDEID~L~~~r~~~~~~-~~~-~~il~~ll~~ld~~~~---------~~~~~ 674 (836)
|.. +..+..++.. ..+..++||||||||.+..++.++... ... ..+.+.|+..++|... .+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 765 3444444432 234567899999999997644322111 000 1345555665654321 12245
Q ss_pred EEEEeccCCCC--------------------------------------------------CCcHHHHhhccccccCCCC
Q 003253 675 ILVLAATNRPF--------------------------------------------------DLDEAVIRRLPRRLMVNLP 704 (836)
Q Consensus 675 vlVIaTTn~~~--------------------------------------------------~Ld~~l~rRf~~~I~v~~P 704 (836)
.++|.|+|-.. .+.|+++.|++.++.|.+.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 67888877610 1447777899999999999
Q ss_pred CHHHHHHHHHHH----Hhh-------CCCC---CcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHH
Q 003253 705 DAPNRAKILQVI----LAK-------EDLS---PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKE 757 (836)
Q Consensus 705 ~~~eR~~Il~~~----l~~-------~~l~---~d~dl~~LA~~t--~G~sg~DL~~L~~~A~~~air~ 757 (836)
+.++..+|+... +++ .++. .+..++.||+.. ..+-.+-|+.+++......+-+
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 999999998762 221 1222 233356666653 3455666666666665544443
No 131
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.5e-12 Score=149.88 Aligned_cols=189 Identities=20% Similarity=0.246 Sum_probs=129.4
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC-ccee-ec------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FINI-SM------ 602 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-~i~v-~~------ 602 (836)
.+|++++|++.+.+.|...+.. .+.++++||+||+|+|||++|+++|+.+.+. .... .|
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 5799999999999999988752 2334789999999999999999999998531 1000 00
Q ss_pred --------cccc--hhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 603 --------SSIT--SKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 603 --------s~l~--s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
.++. .......-..++.+...+... ...|++|||+|.| +.. ..+.|+..++..
T Consensus 80 r~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L-----t~~-------A~NaLLKtLEEP- 146 (605)
T PRK05896 80 ESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML-----STS-------AWNALLKTLEEP- 146 (605)
T ss_pred HHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC-----CHH-------HHHHHHHHHHhC-
Confidence 0110 000001223456666555443 3469999999988 211 234455545432
Q ss_pred ccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 003253 669 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
+..+++|.+|+.+..+.+.+++|+ ..+.|..|+.++...+++..+.+.+.. ++..+..++..+.| +.+++.+++
T Consensus 147 ---p~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlL 221 (605)
T PRK05896 147 ---PKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSIL 221 (605)
T ss_pred ---CCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHH
Confidence 345677777788899999999999 589999999999999999998877654 44557788888876 555555555
Q ss_pred HHH
Q 003253 748 VTA 750 (836)
Q Consensus 748 ~~A 750 (836)
+.+
T Consensus 222 ekL 224 (605)
T PRK05896 222 DQL 224 (605)
T ss_pred HHH
Confidence 553
No 132
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.44 E-value=7.4e-12 Score=131.39 Aligned_cols=200 Identities=19% Similarity=0.229 Sum_probs=127.7
Q ss_pred cccchhhh--chHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccc
Q 003253 530 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 604 (836)
Q Consensus 530 ~~~~~di~--G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~ 604 (836)
..+|+++. +.+.+...++.+... ..+..+++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 46788855 345556666665431 1223579999999999999999999876 67788888766
Q ss_pred cchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCccc-EEEEeccCC
Q 003253 605 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER-ILVLAATNR 683 (836)
Q Consensus 605 l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~-vlVIaTTn~ 683 (836)
+... + .......+|+|||+|.+ +...+..+..+++.. . .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l-----~~~~~~~L~~~~~~~----~-----~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERL-----DDAQQIALFNLFNRV----R-----AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhc-----CchHHHHHHHHHHHH----H-----HcCCcEEEEeCCCC
Confidence 4321 1 11224579999999987 222233333333322 1 1123 344444433
Q ss_pred C--CCCcHHHHhhc--cccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 003253 684 P--FDLDEAVIRRL--PRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 758 (836)
Q Consensus 684 ~--~~Ld~~l~rRf--~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~ 758 (836)
+ ..+.+.+.+|| ...+.+++|+.+++..+++.+....++. ++..++.|++... -+.+++..+++.-...+..
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~~~~~-- 209 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDRYSLE-- 209 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHH--
Confidence 3 23568888888 4688999999999999999887776655 4445677777544 3777777777653322211
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHH
Q 003253 759 LEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHE 798 (836)
Q Consensus 759 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~ 798 (836)
..++||...+++++.
T Consensus 210 -------------------------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 -------------------------QKRPVTLPLLREMLA 224 (227)
T ss_pred -------------------------hCCCCCHHHHHHHHh
Confidence 225788888888875
No 133
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.43 E-value=6.3e-12 Score=140.52 Aligned_cols=185 Identities=24% Similarity=0.347 Sum_probs=131.2
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|++++|++.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+..+
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 6899999999999999988752 2334679999999999999999999998532
Q ss_pred ----------cceeeccccchhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 597 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 597 ----------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
++.++... ......++.++..+... ...||+|||+|.+. ....+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll~ 139 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALLK 139 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHHH
Confidence 11111110 11233466677766543 23599999999882 122344555
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++.. +..+++|.+|+.++.+.+.+++|+ ..+.++.|+.++..++++..+.+.++. ++..+..++..+.| +.+
T Consensus 140 ~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~ 213 (355)
T TIGR02397 140 TLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLR 213 (355)
T ss_pred HHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChH
Confidence 55442 245677777888888889999998 578999999999999999999887764 34556777887766 556
Q ss_pred HHHHHHHHHHH
Q 003253 742 DLKNLCVTAAH 752 (836)
Q Consensus 742 DL~~L~~~A~~ 752 (836)
.+.+.++.+..
T Consensus 214 ~a~~~lekl~~ 224 (355)
T TIGR02397 214 DALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHh
Confidence 66666655543
No 134
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.43 E-value=3.8e-12 Score=153.03 Aligned_cols=181 Identities=20% Similarity=0.364 Sum_probs=122.6
Q ss_pred ccchhhhchHHHHH---HHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 531 VTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 531 ~~~~di~G~~~vk~---~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+|+|++|++.+.. .|++.+.. ....++||+||||||||++|+++|+..+.+|+.+++...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 57999999998874 45555541 122589999999999999999999999999988876531
Q ss_pred hcccccHHHHHHHHHHHH-----hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccC
Q 003253 608 KWFGEGEKYVKAVFSLAS-----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 682 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~-----~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn 682 (836)
+ ...++..+..+. .....+|||||||.+ +...+. .++..++ ...+++|++|+
T Consensus 89 ---~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----n~~qQd-------aLL~~lE------~g~IiLI~aTT 145 (725)
T PRK13341 89 ---G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----NKAQQD-------ALLPWVE------NGTITLIGATT 145 (725)
T ss_pred ---h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----CHHHHH-------HHHHHhc------CceEEEEEecC
Confidence 1 112333333331 124579999999988 222222 2222222 24466666553
Q ss_pred --CCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh-------CCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 003253 683 --RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK-------EDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 752 (836)
Q Consensus 683 --~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~-------~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~ 752 (836)
....+++++++|+ ..+.|++++.+++..+++..+.. ..+. ++..++.|+..+.| ..+.+.++++.|+.
T Consensus 146 enp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 146 ENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred CChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3356889999997 67999999999999999998872 2232 34456778887754 56677777776653
No 135
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=4.8e-12 Score=148.17 Aligned_cols=181 Identities=20% Similarity=0.264 Sum_probs=126.4
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|+||+|++.+++.|.+.+.. .+-++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 5899999999999999998863 2224689999999999999999999999653
Q ss_pred ----------cceeeccccchhcccccHHHHHHHHHHHH----hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 597 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 597 ----------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~----~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
++.++... ...-..++.+.+.+. .....||||||+|.|- ....+.|+.
T Consensus 80 ~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLLk 141 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALLK 141 (624)
T ss_pred HHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHHH
Confidence 12222110 011122343333222 2345799999999882 122344555
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++.. ...+++|.+|+.+..+.+.+++|+ ..+.|..++.++...+|+..+...++. ++..+..|+..+.|-. +
T Consensus 142 ~LEEP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gdl-R 215 (624)
T PRK14959 142 TLEEP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSV-R 215 (624)
T ss_pred Hhhcc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-H
Confidence 55432 246778888888888889999999 678999999999999999988887754 4556778888887643 3
Q ss_pred HHHHHHH
Q 003253 742 DLKNLCV 748 (836)
Q Consensus 742 DL~~L~~ 748 (836)
++.+++.
T Consensus 216 ~Al~lLe 222 (624)
T PRK14959 216 DSMSLLG 222 (624)
T ss_pred HHHHHHH
Confidence 4444444
No 136
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.42 E-value=1.6e-11 Score=129.68 Aligned_cols=183 Identities=15% Similarity=0.153 Sum_probs=114.4
Q ss_pred cccchhhh-c-hHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CCcceeeccc
Q 003253 530 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSS 604 (836)
Q Consensus 530 ~~~~~di~-G-~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~---~~~i~v~~s~ 604 (836)
..+|++++ | ...+...++..... ....+++|+||+|||||+|++++++++. ..+..++...
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45777755 3 45555666655431 1124799999999999999999998763 3344554433
Q ss_pred cchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCccc-EEEEeccCC
Q 003253 605 ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER-ILVLAATNR 683 (836)
Q Consensus 605 l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~-vlVIaTTn~ 683 (836)
... ....+...... ..+|+||||+.+.+.. ..+..+..+++.+ ++ .++ .+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~---~~~~~lf~l~n~~---~e------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE---LWEMAIFDLYNRI---LE------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH---HHHHHHHHHHHHH---HH------cCCCeEEEeCCCC
Confidence 211 11122222222 3689999999883221 1122233333332 11 122 355555566
Q ss_pred CCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 003253 684 PFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVT 749 (836)
Q Consensus 684 ~~~---Ld~~l~rRf~--~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~ 749 (836)
|.. +.+.+++|+. .++.+..|+.+++.++++......++. ++.-++.|+...+| +.+.+..+++.
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 655 5799999995 678889999999999999877766555 45567888888876 55666666655
No 137
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.3e-12 Score=150.16 Aligned_cols=184 Identities=20% Similarity=0.274 Sum_probs=132.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|+|++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 5899999999999999998863 2344678999999999999999999998642
Q ss_pred ----------cceeeccccchhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 597 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 597 ----------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
++.++... ...-..++.+.+.+... ...|+||||+|.| +. ...+.|+.
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----t~-------~a~naLLk 141 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----ST-------NAFNALLK 141 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----CH-------HHHHHHHH
Confidence 11121111 11223456666555432 2369999999988 21 22344555
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++. +...+++|.+|+.++.|.+.+++|+ ..+.|..++.++....+..++.+.++. ++..+..|+..+.| +.+
T Consensus 142 ~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr 215 (576)
T PRK14965 142 TLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMR 215 (576)
T ss_pred HHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 5543 2356777778888899999999999 689999999999999999999888765 45567788888887 555
Q ss_pred HHHHHHHHHH
Q 003253 742 DLKNLCVTAA 751 (836)
Q Consensus 742 DL~~L~~~A~ 751 (836)
++.++++.+.
T Consensus 216 ~al~~Ldqli 225 (576)
T PRK14965 216 DSLSTLDQVL 225 (576)
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 138
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.42 E-value=3.7e-12 Score=154.83 Aligned_cols=165 Identities=18% Similarity=0.299 Sum_probs=117.8
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc--------
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 606 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~-------- 606 (836)
+..|++++|+.+.+++...... . ......++|+||||+|||++++.+|+.++.+|+.++++...
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4899999999999887642211 0 11224699999999999999999999999999998876532
Q ss_pred -hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCC-----------cccCccc
Q 003253 607 -SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-----------RTKDTER 674 (836)
Q Consensus 607 -s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~-----------~~~~~~~ 674 (836)
..|.|...+.+.+.+..+.... .||+|||||.+..... ..... .|+..++.- ..-+-.+
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-g~~~~-------aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-GDPAS-------ALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-CCHHH-------HHHHHhccccEEEEecccccccccCCc
Confidence 2355666666666666554434 4899999999953321 11122 223223210 0112378
Q ss_pred EEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHh
Q 003253 675 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA 718 (836)
Q Consensus 675 vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~ 718 (836)
+++|||+|.. .+++++++|| .+|.+..++.++..+|++.++.
T Consensus 466 v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eEEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhh
Confidence 9999999987 5999999999 5899999999999999988874
No 139
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.42 E-value=9.6e-12 Score=130.04 Aligned_cols=185 Identities=21% Similarity=0.265 Sum_probs=119.3
Q ss_pred ccchhhh--chHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecccc
Q 003253 531 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 605 (836)
Q Consensus 531 ~~~~di~--G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l 605 (836)
.+|++++ +...+.+.+++++. .....+++|+||+|||||++|+++++.+ +.+++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4566654 45667777777653 1223689999999999999999999887 567888888776
Q ss_pred chhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 606 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
.... ..++.... .+.+|+|||++.+.... .....+..+++.. .. . ...+|++++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~---~~~~~L~~~l~~~----~~---~--~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP---EWQEALFHLYNRV----RE---A--GGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh---HHHHHHHHHHHHH----HH---c--CCeEEEECCCChH
Confidence 5321 22222222 34699999999883111 1122222222221 11 1 1234444443443
Q ss_pred CC--c-HHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 003253 686 DL--D-EAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 752 (836)
Q Consensus 686 ~L--d-~~l~rRf~--~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~ 752 (836)
.+ . +.+.+||. ..+.+++|+.+++..+++.++.+.++. ++..+..|+.. -+.+.+++.++++.+..
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDR 207 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 33 2 78888874 678899999999999999887766554 44456777775 45588888888877654
No 140
>PRK06893 DNA replication initiation factor; Validated
Probab=99.42 E-value=1.2e-11 Score=130.14 Aligned_cols=158 Identities=18% Similarity=0.229 Sum_probs=100.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 646 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~ 646 (836)
..++|+||||||||+|++++|+++ +.....++..... .....++.... ...+|+||||+.+.+...
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCChH-
Confidence 368999999999999999999986 3444555543211 11112222222 457999999998853321
Q ss_pred CchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc---HHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCC
Q 003253 647 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD---EAVIRRLP--RRLMVNLPDAPNRAKILQVILAKED 721 (836)
Q Consensus 647 ~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld---~~l~rRf~--~~I~v~~P~~~eR~~Il~~~l~~~~ 721 (836)
....+..+++.. .. .+..++|++++..|..++ +.+.+|+. ..+.++.|+.++|.+|++..+...+
T Consensus 109 --~~~~l~~l~n~~-------~~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 109 --WELAIFDLFNRI-------KE-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred --HHHHHHHHHHHH-------HH-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 111222222222 11 123355566666676654 88999773 5788999999999999999887766
Q ss_pred CC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 003253 722 LS-PDVDFDAIANMTDGYSGSDLKNLCVT 749 (836)
Q Consensus 722 l~-~d~dl~~LA~~t~G~sg~DL~~L~~~ 749 (836)
+. ++..++.|++...| +.+.+..+++.
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 206 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDL 206 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 65 55567888888775 45555555543
No 141
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=4.2e-12 Score=149.08 Aligned_cols=182 Identities=18% Similarity=0.213 Sum_probs=126.6
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc-------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------- 597 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~------------- 597 (836)
.+|+|++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+++|+.+.+.-
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 5899999999999999998863 23445689999999999999999999986421
Q ss_pred -------------ceeeccccchhcccccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHH
Q 003253 598 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 660 (836)
Q Consensus 598 -------------i~v~~s~l~s~~~g~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~l 660 (836)
+.++.+. ...-..++.+.+.+.. ....|+||||+|.| +. ...+.|
T Consensus 77 ~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----t~-------~A~NAL 138 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----TT-------AGFNAL 138 (584)
T ss_pred HHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----CH-------HHHHHH
Confidence 1111110 0012234444443322 24469999999988 21 234455
Q ss_pred HHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCc
Q 003253 661 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 739 (836)
Q Consensus 661 l~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~s 739 (836)
+..++. .+..+++|.+|+.+..+.+.+++|+ .++.|..++.++..+++..++.+.++. ++..+..++..+.| +
T Consensus 139 LK~LEE----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-d 212 (584)
T PRK14952 139 LKIVEE----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-S 212 (584)
T ss_pred HHHHhc----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 555554 2356777777888889999999997 789999999999999999999887765 34445666666665 4
Q ss_pred HHHHHHHHHH
Q 003253 740 GSDLKNLCVT 749 (836)
Q Consensus 740 g~DL~~L~~~ 749 (836)
.+++.++++.
T Consensus 213 lR~aln~Ldq 222 (584)
T PRK14952 213 PRDTLSVLDQ 222 (584)
T ss_pred HHHHHHHHHH
Confidence 4454444444
No 142
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=3.7e-12 Score=154.83 Aligned_cols=182 Identities=19% Similarity=0.191 Sum_probs=126.8
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc-------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------- 597 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~------------- 597 (836)
.+|++|+|++.+++.|+..+.. .+..+.+||+||+|+|||++|+.||+.+.+.-
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 5899999999999999998862 23335699999999999999999999996521
Q ss_pred -------------ceeeccccchhcccccHHHHHHHHHHH----HhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHH
Q 003253 598 -------------INISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 660 (836)
Q Consensus 598 -------------i~v~~s~l~s~~~g~~e~~i~~lf~~A----~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~l 660 (836)
+.++... ...-..++.+.+.+ ......|+||||+|.| +. ...+.|
T Consensus 79 ~~~~~g~~~~~dv~eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----t~-------~a~NaL 140 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----TP-------QGFNAL 140 (824)
T ss_pred HHHHcCCCCCCcEEEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----CH-------HHHHHH
Confidence 1111110 00112334433322 2345579999999999 21 233455
Q ss_pred HHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCc
Q 003253 661 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 739 (836)
Q Consensus 661 l~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~s 739 (836)
+..|+.. ...+++|.+|+.++.|.+.|++|+ ..+.|..++.++..++|+.++.++++. .+..+..|+..+.| +
T Consensus 141 LK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 141 LKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 5555543 356777777788888999999999 789999999999999999999888765 33445667777665 5
Q ss_pred HHHHHHHHHH
Q 003253 740 GSDLKNLCVT 749 (836)
Q Consensus 740 g~DL~~L~~~ 749 (836)
.+++.++++.
T Consensus 215 lR~Al~eLEK 224 (824)
T PRK07764 215 VRDSLSVLDQ 224 (824)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 143
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=1.1e-11 Score=142.14 Aligned_cols=215 Identities=18% Similarity=0.263 Sum_probs=131.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCC
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 645 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~ 645 (836)
.++++||||+|+|||+|++++++++ +..++++++..+...+.......-...|....+ .+.+|+||||+.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh-
Confidence 3579999999999999999999987 678888887665443322111111123333333 46799999999884322
Q ss_pred CCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC---CCcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhC
Q 003253 646 NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKE 720 (836)
Q Consensus 646 ~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~---~Ld~~l~rRf~--~~I~v~~P~~~eR~~Il~~~l~~~ 720 (836)
..++.+..+++.+.. ..+.+|++++..|. .+++.+.+||. ..+.+..|+.++|..|++..+...
T Consensus 219 --~~qeelf~l~N~l~~---------~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 219 --ATQEEFFHTFNSLHT---------EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred --hhHHHHHHHHHHHHH---------CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 123333344444321 12345555555554 46789999995 678888999999999999999887
Q ss_pred CCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHH
Q 003253 721 DLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR-PIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHE 798 (836)
Q Consensus 721 ~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~-air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~ 798 (836)
++. ++.-++.|+....+ +.++|...+...+.. +..++ ...++++++.++++.
T Consensus 288 ~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~-------------------------~~~~i~~~~~~~~l~ 341 (445)
T PRK12422 288 SIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL-------------------------SHQLLYVDDIKALLH 341 (445)
T ss_pred CCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh-------------------------hCCCCCHHHHHHHHH
Confidence 655 44456668777664 455555555544322 11111 124688888888888
Q ss_pred HhccCccccccch-hhHHHHHHHhc
Q 003253 799 RVCASVSSESVNM-SELLQWNELYG 822 (836)
Q Consensus 799 ~v~pS~~~~~~~~-~~~~~W~~i~G 822 (836)
.+...-....... .=...|.+-||
T Consensus 342 ~~~~~~~~~~~t~~~I~~~Va~~~~ 366 (445)
T PRK12422 342 DVLEAAESVRLTPSKIIRAVAQYYG 366 (445)
T ss_pred HhhhcccCCCCCHHHHHHHHHHHhC
Confidence 7533221111111 12346667777
No 144
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=9.7e-13 Score=138.91 Aligned_cols=207 Identities=20% Similarity=0.242 Sum_probs=145.2
Q ss_pred cCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeE
Q 003253 16 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 95 (836)
Q Consensus 16 v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~l 95 (836)
++|+.+..=-||+.=|= -+.|+-|.+-|..-|+..+. +-..+|-+-+|=|||.||||| +++.|.||||+++-++.
T Consensus 131 ~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPGT--GKTSLCKaLaQkLSIR~ 205 (423)
T KOG0744|consen 131 YLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPGT--GKTSLCKALAQKLSIRT 205 (423)
T ss_pred eccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCCC--ChhHHHHHHHHhheeee
Confidence 45555555667776665 78899999988888887655 345689999999999999999 99999999999988771
Q ss_pred EEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 003253 96 LIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTS 175 (836)
Q Consensus 96 l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (836)
.+=|..
T Consensus 206 -----~~~y~~--------------------------------------------------------------------- 211 (423)
T KOG0744|consen 206 -----NDRYYK--------------------------------------------------------------------- 211 (423)
T ss_pred -----cCcccc---------------------------------------------------------------------
Confidence 111110
Q ss_pred cccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccc
Q 003253 176 AGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFF 255 (836)
Q Consensus 176 ~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~ 255 (836)
| . ..|.|. |.
T Consensus 212 ------------------~----------------------~---liEins-------------------------hs-- 221 (423)
T KOG0744|consen 212 ------------------G----------------------Q---LIEINS-------------------------HS-- 221 (423)
T ss_pred ------------------c----------------------e---EEEEeh-------------------------hH--
Confidence 0 0 011121 11
Q ss_pred cccccccccCCCcchhHHHHHHHHHHHHhhccCCCC--eEEEEcCchhhhc------------cCcchhhHHHHHHhcCC
Q 003253 256 CNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCP--FILFMKDAEKSIA------------GNSDSYSTFKSRLEKLP 321 (836)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p--~Ilfi~ei~~~l~------------~~~~~~~~l~~~l~~l~ 321 (836)
-+++|-+| .-+++..+|+-+.+..+... +.+.||||+.+-. +..++.|.+.++|+++.
T Consensus 222 ------LFSKWFsE--SgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK 293 (423)
T KOG0744|consen 222 ------LFSKWFSE--SGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK 293 (423)
T ss_pred ------HHHHHHhh--hhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc
Confidence 12455554 55566666665554444433 3457999998553 34678899999999886
Q ss_pred C--cEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChH
Q 003253 322 D--KVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDE 399 (836)
Q Consensus 322 g--~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e 399 (836)
. ||++++.-|..++ +|.|+--|-.-+..|+.|..+
T Consensus 294 ~~~NvliL~TSNl~~s-------------------------------------------iD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 294 RYPNVLILATSNLTDS-------------------------------------------IDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred cCCCEEEEeccchHHH-------------------------------------------HHHHhhhHhhheeecCCccHH
Confidence 4 9999999998763 344455556689999999999
Q ss_pred HHHHHHHHhhHhhhhhhhccCCc
Q 003253 400 ALLASWKHQLDRDSETLKMKGNL 422 (836)
Q Consensus 400 ~rl~Ilk~~l~e~~~~~~~~~n~ 422 (836)
++++|+|.-++|++..-.+..+.
T Consensus 331 ai~~IlkscieEL~~~gIi~~~~ 353 (423)
T KOG0744|consen 331 AIYEILKSCIEELISSGIILFHQ 353 (423)
T ss_pred HHHHHHHHHHHHHHhcCeeeeec
Confidence 99999999999887665444433
No 145
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.40 E-value=6.3e-12 Score=138.42 Aligned_cols=155 Identities=21% Similarity=0.264 Sum_probs=107.2
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 610 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~ 610 (836)
.++++++|++.+++.+...+.. ...++.+||+||||+|||++|++++++++.+++.+++.+ .. .
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 5899999999999999988752 123356777999999999999999999999999998876 11 1
Q ss_pred cccHHHHHHHHHHHH-hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcH
Q 003253 611 GEGEKYVKAVFSLAS-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 689 (836)
Q Consensus 611 g~~e~~i~~lf~~A~-~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~ 689 (836)
......+........ ...+.||+|||+|.+.. ... ...+..+ ++.. ..++.+|+|||.+..+.+
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----~~~----~~~L~~~---le~~----~~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----ADA----QRHLRSF---MEAY----SKNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccC----HHH----HHHHHHH---HHhc----CCCceEEEEcCChhhchH
Confidence 111111211111111 12568999999997721 111 1222222 3322 245678889999999999
Q ss_pred HHHhhccccccCCCCCHHHHHHHHHHHH
Q 003253 690 AVIRRLPRRLMVNLPDAPNRAKILQVIL 717 (836)
Q Consensus 690 ~l~rRf~~~I~v~~P~~~eR~~Il~~~l 717 (836)
++++|| ..+.++.|+.+++..+++.++
T Consensus 147 ~l~sR~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRSRC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHhhc-eEEEeCCCCHHHHHHHHHHHH
Confidence 999999 578999999999988876543
No 146
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=1.2e-11 Score=145.39 Aligned_cols=189 Identities=20% Similarity=0.211 Sum_probs=131.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC-------ccee-ec
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FINI-SM 602 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------~i~v-~~ 602 (836)
.+|+|++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+. .-.+ +|
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 5799999999999999998862 2334679999999999999999999998642 1000 00
Q ss_pred c--------ccchhcccc---cHHHHHHHHHHHH----hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCC
Q 003253 603 S--------SITSKWFGE---GEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 667 (836)
Q Consensus 603 s--------~l~s~~~g~---~e~~i~~lf~~A~----~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~ 667 (836)
. ++. ..-|. .-..++.+.+.+. .....|++|||+|.| + ....+.|+..++.
T Consensus 80 ~~i~~~~~~dv~-~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----s-------~~a~naLLK~LEe- 145 (563)
T PRK06647 80 KSIDNDNSLDVI-EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----S-------NSAFNALLKTIEE- 145 (563)
T ss_pred HHHHcCCCCCeE-EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----C-------HHHHHHHHHhhcc-
Confidence 0 000 01111 1233455544333 234569999999988 2 1234555555554
Q ss_pred cccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHH
Q 003253 668 RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNL 746 (836)
Q Consensus 668 ~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L 746 (836)
++..+++|.+|+.+..+.+++++|+ ..+.|..++.++..++++..+...++. ++..+..|+..+.| +.+++.++
T Consensus 146 ---pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alsl 220 (563)
T PRK06647 146 ---PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTL 220 (563)
T ss_pred ---CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 2356777777777888999999999 578999999999999999998877765 45557778888776 66677777
Q ss_pred HHHHH
Q 003253 747 CVTAA 751 (836)
Q Consensus 747 ~~~A~ 751 (836)
++.+.
T Consensus 221 Ldkli 225 (563)
T PRK06647 221 FDQVV 225 (563)
T ss_pred HHHHH
Confidence 66554
No 147
>PRK08727 hypothetical protein; Validated
Probab=99.38 E-value=3.6e-11 Score=126.87 Aligned_cols=157 Identities=22% Similarity=0.287 Sum_probs=99.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 646 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~ 646 (836)
..++|+||+|||||+|++++++++ +..++.+++.++.. .+...+.... ...+|+|||++.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998776 55566666544321 2233333332 45799999999884322
Q ss_pred CchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCC---cHHHHhhc--cccccCCCCCHHHHHHHHHHHHhhCC
Q 003253 647 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL---DEAVIRRL--PRRLMVNLPDAPNRAKILQVILAKED 721 (836)
Q Consensus 647 ~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~L---d~~l~rRf--~~~I~v~~P~~~eR~~Il~~~l~~~~ 721 (836)
..+..+..+++.. .. ...-+|+++...|..+ .+.+.+|| ...+.++.|+.+++.+|++..+...+
T Consensus 110 -~~~~~lf~l~n~~----~~-----~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 110 -EDEVALFDFHNRA----RA-----AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred -HHHHHHHHHHHHH----HH-----cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 1122222222222 11 1222444444456554 68999997 45788899999999999999777665
Q ss_pred CC-CcccHHHHHHHcCCCcHHHHHHHHHH
Q 003253 722 LS-PDVDFDAIANMTDGYSGSDLKNLCVT 749 (836)
Q Consensus 722 l~-~d~dl~~LA~~t~G~sg~DL~~L~~~ 749 (836)
+. ++..++.|+..+.| ..+.+.++++.
T Consensus 180 l~l~~e~~~~La~~~~r-d~r~~l~~L~~ 207 (233)
T PRK08727 180 LALDEAAIDWLLTHGER-ELAGLVALLDR 207 (233)
T ss_pred CCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 54 45567888888774 33333344443
No 148
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.3e-11 Score=142.88 Aligned_cols=191 Identities=19% Similarity=0.259 Sum_probs=128.7
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC-------cce-eec
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------FIN-ISM 602 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------~i~-v~~ 602 (836)
.+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+.+|+.+++. .-. .+|
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 5799999999999999998863 2334568999999999999999999998641 110 011
Q ss_pred c--------ccc--hhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 603 S--------SIT--SKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 603 s--------~l~--s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
. ++. .......-..++.+.+.+... .+.|++|||+|.|. ....+.|+..++..
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLLk~LEep- 146 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALLKTLEEP- 146 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHHHHHhcC-
Confidence 1 110 000001122345555554433 34699999999882 12234455555442
Q ss_pred ccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 003253 669 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
+..+++|.+|+.++.+.+++.+|+ ..+.|..|+.++...+++..+...++. ++..+..|+..+.| +.+++.+++
T Consensus 147 ---p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~L 221 (486)
T PRK14953 147 ---PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLL 221 (486)
T ss_pred ---CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 234555555667788888999999 579999999999999999999888765 34456778888775 556666666
Q ss_pred HHHHH
Q 003253 748 VTAAH 752 (836)
Q Consensus 748 ~~A~~ 752 (836)
+.+..
T Consensus 222 dkl~~ 226 (486)
T PRK14953 222 DQAST 226 (486)
T ss_pred HHHHH
Confidence 66543
No 149
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=7.2e-12 Score=148.68 Aligned_cols=189 Identities=22% Similarity=0.320 Sum_probs=132.2
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce---eecc----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---ISMS---- 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~---v~~s---- 603 (836)
.+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-.. -.|.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 5899999999999999998863 2344678999999999999999999998653210 0111
Q ss_pred ------ccc--hhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccC
Q 003253 604 ------SIT--SKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 671 (836)
Q Consensus 604 ------~l~--s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~ 671 (836)
++. ..........++.+.+.+... ...|++|||+|.|- ....+.|+..++..
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEP---- 145 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEP---- 145 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcC----
Confidence 000 000001234467777666543 34699999999882 12344555555542
Q ss_pred cccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 003253 672 TERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTA 750 (836)
Q Consensus 672 ~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A 750 (836)
+..+++|.+|+.++.+.+.+++|+ .++.|..|+.++...+++..+.+.++. .+..+..+|..+.| +.+++..++..+
T Consensus 146 P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl 223 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQV 223 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 356777777788899999999999 589999999999999999988887765 33447778888876 445555555443
No 150
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=1.9e-11 Score=144.38 Aligned_cols=191 Identities=21% Similarity=0.194 Sum_probs=133.4
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceee-------cc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------MS 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~-------~s 603 (836)
.+|++++|++.+++.|...+.. .+.++++||+||+|+|||++|+++|+.+.+...... |.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 5899999999999999998863 244578999999999999999999999865432111 10
Q ss_pred --------------ccchh--cccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHH
Q 003253 604 --------------SITSK--WFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 663 (836)
Q Consensus 604 --------------~l~s~--~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ 663 (836)
++... -....-..++.+.+.+... ...|+||||+|.| +. ...+.|+..
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L-----s~-------~a~naLLKt 155 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML-----ST-------AAFNALLKT 155 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC-----CH-------HHHHHHHHH
Confidence 11000 0001123466676666433 3479999999988 21 223445544
Q ss_pred hcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHH
Q 003253 664 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSD 742 (836)
Q Consensus 664 ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~D 742 (836)
++.. ...+.+|.+|+.++.+.+.+++|+ ..+.|..|+.++...+++..+.+.+.. .+..+..|+..+.| +.++
T Consensus 156 LEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~ 229 (598)
T PRK09111 156 LEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRD 229 (598)
T ss_pred HHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 5442 245666667777778888999999 689999999999999999999888765 34556777888776 6667
Q ss_pred HHHHHHHHHH
Q 003253 743 LKNLCVTAAH 752 (836)
Q Consensus 743 L~~L~~~A~~ 752 (836)
+.++++.+..
T Consensus 230 al~~Ldkli~ 239 (598)
T PRK09111 230 GLSLLDQAIA 239 (598)
T ss_pred HHHHHHHHHh
Confidence 7676665543
No 151
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=1.3e-11 Score=141.85 Aligned_cols=168 Identities=17% Similarity=0.309 Sum_probs=110.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeeccccchhcccccH-HHHHHHHHHHHhcCCceEEEccchhhhcC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGE-KYVKAVFSLASKIAPSVIFVDEVDSMLGR 643 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l~s~~~g~~e-~~i~~lf~~A~~~~psIL~IDEID~L~~~ 643 (836)
++++||||+|+|||+|++++|+++ +..++++++.++...+..... ..+. -|....+..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~-~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN-EFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHH-HHHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 456788888776554322111 1111 233333346889999999988543
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHh
Q 003253 644 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILA 718 (836)
Q Consensus 644 r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~---Ld~~l~rRf~--~~I~v~~P~~~eR~~Il~~~l~ 718 (836)
.. .+..+..+++.+. + ..+.+||++...|.. +.+.+.+||. ..+.+.+|+.+.|..|++..+.
T Consensus 210 ~~---~q~elf~~~n~l~---~------~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 210 TG---VQTELFHTFNELH---D------SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred HH---HHHHHHHHHHHHH---H------cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 21 1222223333322 1 123456655566655 5567888984 3677899999999999999988
Q ss_pred hCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 719 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 719 ~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
..++. ++..++.||....| +.++|..++....
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~ 310 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHH
Confidence 66554 45557888887765 6666666665543
No 152
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.37 E-value=1.3e-11 Score=128.41 Aligned_cols=189 Identities=23% Similarity=0.338 Sum_probs=137.5
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 606 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~ 606 (836)
.+.+++++|++..++.|.+.... |.++ .|.+++||+|++|||||++++++..+. |..+|.+...++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~G---~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQG---LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHcC---CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 47899999999999999887653 3333 577899999999999999999999887 6777777765543
Q ss_pred hhcccccHHHHHHHHHHHHhc-CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 607 SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 607 s~~~g~~e~~i~~lf~~A~~~-~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
.+..++...+.. ..-|||+|++. + ...+. -...|...++|.....+.+|+|.||+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d~-----~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F----EEGDT-----EYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C----CCCcH-----HHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 255566665533 34699999864 2 11211 224566678887777789999999999843
Q ss_pred CCc---------------H--------HHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCc-ccH----HHHHHHcCC
Q 003253 686 DLD---------------E--------AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD-VDF----DAIANMTDG 737 (836)
Q Consensus 686 ~Ld---------------~--------~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d-~dl----~~LA~~t~G 737 (836)
.+. + ++..||...+.|..|+.++-.+|++.++...++.-+ .++ ...|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 221 1 344499999999999999999999999988877633 222 233455567
Q ss_pred CcHHHHHHHHH
Q 003253 738 YSGSDLKNLCV 748 (836)
Q Consensus 738 ~sg~DL~~L~~ 748 (836)
.||+--.+.+.
T Consensus 233 RSGRtA~QF~~ 243 (249)
T PF05673_consen 233 RSGRTARQFID 243 (249)
T ss_pred CCHHHHHHHHH
Confidence 88876555544
No 153
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.37 E-value=1.5e-11 Score=144.89 Aligned_cols=181 Identities=18% Similarity=0.212 Sum_probs=118.2
Q ss_pred hhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCcceeecc
Q 003253 534 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 603 (836)
Q Consensus 534 ~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~~s 603 (836)
+.|.+.++..++|...+...+. + ..|...++|+|+||||||++++.+..++ .+.+++|+|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 5688888888888887764221 1 1232345799999999999999998776 2567889985
Q ss_pred ccchh----------ccc-------ccHHHHHHHHHHHHh--cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHh
Q 003253 604 SITSK----------WFG-------EGEKYVKAVFSLASK--IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 664 (836)
Q Consensus 604 ~l~s~----------~~g-------~~e~~i~~lf~~A~~--~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~l 664 (836)
.+... +.+ .....+..+|..... ....||+|||||.|... .+.. +-.|+...
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDV----LYnLFR~~ 896 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKV----LFTLFDWP 896 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHH----HHHHHHHh
Confidence 43211 111 112345566665422 23569999999999532 2222 22222211
Q ss_pred cCCcccCcccEEEEeccCC---CCCCcHHHHhhccc-cccCCCCCHHHHHHHHHHHHhhC-CCCCcccHHHHHHHcC
Q 003253 665 DGLRTKDTERILVLAATNR---PFDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAKE-DLSPDVDFDAIANMTD 736 (836)
Q Consensus 665 d~~~~~~~~~vlVIaTTn~---~~~Ld~~l~rRf~~-~I~v~~P~~~eR~~Il~~~l~~~-~l~~d~dl~~LA~~t~ 736 (836)
. ....+++|||++|. +..+++.+.+||.. .+.|++++.+++.+||+..+... .+-.+..++.+|+.+.
T Consensus 897 -~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 897 -T---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred -h---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 1 12367999999986 45677888888864 48899999999999999988753 2224445666676544
No 154
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=2.2e-11 Score=138.42 Aligned_cols=190 Identities=18% Similarity=0.202 Sum_probs=126.1
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc-c---------ee
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I---------NI 600 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~-i---------~v 600 (836)
.+|++++|++.+++.|+..+.. .+.++.+||+||||+|||++|+++|+.+.+.- . .-
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 5799999999999999988862 23446799999999999999999999996631 0 00
Q ss_pred eccc------c-------chhcccc---cHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHH
Q 003253 601 SMSS------I-------TSKWFGE---GEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 660 (836)
Q Consensus 601 ~~s~------l-------~s~~~g~---~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~l 660 (836)
.|.. + +..+.+. ....++.+.+.+... ...|+||||+|.+. . ...+.+
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----~-------~~~~~L 147 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----I-------AAFNAF 147 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----H-------HHHHHH
Confidence 1110 0 0001111 123455554444322 33699999999882 1 122334
Q ss_pred HHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCc
Q 003253 661 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 739 (836)
Q Consensus 661 l~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~s 739 (836)
+..++.. +..+++|.+|+.+..+.+.+.+|+ ..+.|..++.++..+.++..+...+.. ++..++.|+..+.| +
T Consensus 148 Lk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~ 221 (397)
T PRK14955 148 LKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-S 221 (397)
T ss_pred HHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 4444432 234555556666788888999998 589999999999999999988877654 45567788888876 5
Q ss_pred HHHHHHHHHHHH
Q 003253 740 GSDLKNLCVTAA 751 (836)
Q Consensus 740 g~DL~~L~~~A~ 751 (836)
.+.+.+.++.+.
T Consensus 222 lr~a~~~L~kl~ 233 (397)
T PRK14955 222 MRDAQSILDQVI 233 (397)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 155
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.6e-11 Score=141.29 Aligned_cols=189 Identities=20% Similarity=0.240 Sum_probs=127.2
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce---------ee
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------IS 601 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~---------v~ 601 (836)
.+|+|++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+.-.. .+
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 6899999999999999988863 2344679999999999999999999988542100 00
Q ss_pred cccc-------chhccccc---HHHHHHHHHHH----HhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCC
Q 003253 602 MSSI-------TSKWFGEG---EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 667 (836)
Q Consensus 602 ~s~l-------~s~~~g~~---e~~i~~lf~~A----~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~ 667 (836)
|..+ .-.+.|.. -..++.+.+.+ ......||+|||+|.+. ....+.|+..++..
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~LLk~lEep 148 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSLLKTLEEP 148 (451)
T ss_pred HHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHHHHHhhcC
Confidence 0000 00011111 12233332222 22456899999999882 11234555555542
Q ss_pred cccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHH
Q 003253 668 RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNL 746 (836)
Q Consensus 668 ~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L 746 (836)
+..+++|.+|+.+..+.+.+++|+ ..+.|..++.++...+++..+.+.++. ++..+..|+..+.| +.+++.++
T Consensus 149 ----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~ 222 (451)
T PRK06305 149 ----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESL 222 (451)
T ss_pred ----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 245677777788888999999999 678999999999999999988877754 44567788888876 44555555
Q ss_pred HHHH
Q 003253 747 CVTA 750 (836)
Q Consensus 747 ~~~A 750 (836)
++..
T Consensus 223 Lekl 226 (451)
T PRK06305 223 YDYV 226 (451)
T ss_pred HHHH
Confidence 5443
No 156
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=3.2e-11 Score=135.80 Aligned_cols=190 Identities=17% Similarity=0.211 Sum_probs=129.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc-----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI----- 605 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l----- 605 (836)
.+|++++|++.+.+.+...+.. ...++++|||||||+|||++|+++|+.+..+.....+..+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 5899999999999999988862 2334689999999999999999999998553221111000
Q ss_pred -chhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEec
Q 003253 606 -TSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 680 (836)
Q Consensus 606 -~s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaT 680 (836)
...........++.+++.+... .+.||+|||+|.+.. ...+.++..++.. ....++|.+
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~----~~~~~~Il~ 144 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP----PAHAIFILA 144 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC----CCceEEEEE
Confidence 0011112234566677665432 346999999998721 1234454444432 234566666
Q ss_pred cCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 681 TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 681 Tn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
|+.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++. ++..++.|+..+.| +.+.+.+.++...
T Consensus 145 ~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 145 TTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 777888999999998 578999999999999999988887764 45567777877765 5555544444433
No 157
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=1.5e-11 Score=142.67 Aligned_cols=186 Identities=20% Similarity=0.251 Sum_probs=131.2
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|++++|++.+.+.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 5899999999999999998862 2334568999999999999999999998421
Q ss_pred ----------cceeeccccchhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 597 ----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 597 ----------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
++.++.+. ...-..++.+...+... ...|++|||+|.| +. ...+.|+.
T Consensus 78 ~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----t~-------~A~NALLK 139 (535)
T PRK08451 78 QSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----TK-------EAFNALLK 139 (535)
T ss_pred HHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----CH-------HHHHHHHH
Confidence 11111110 00123455555443222 2359999999988 22 22344444
Q ss_pred HhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHH
Q 003253 663 NWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~ 741 (836)
.++.. +..+.+|.+|+.+..+.+.+++|+ ..++|..++.++....++..+.+.++. .+..+..|+..+.| +.+
T Consensus 140 ~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR 213 (535)
T PRK08451 140 TLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLR 213 (535)
T ss_pred HHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 44442 244666666777899999999998 689999999999999999999888765 45567788888776 777
Q ss_pred HHHHHHHHHHHH
Q 003253 742 DLKNLCVTAAHR 753 (836)
Q Consensus 742 DL~~L~~~A~~~ 753 (836)
++.++++.|...
T Consensus 214 ~alnlLdqai~~ 225 (535)
T PRK08451 214 DTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHHh
Confidence 777777766644
No 158
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.35 E-value=1.8e-12 Score=146.32 Aligned_cols=203 Identities=23% Similarity=0.294 Sum_probs=142.5
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecccc
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 605 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l 605 (836)
...+|++|+|.......+.+.+.. ..+...+|||.|.+||||..+|++|.+.+ +.|||.++|+.+
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 457899999999888888777652 23445789999999999999999999988 689999999765
Q ss_pred -----chhcccccHHH--------HHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCc
Q 003253 606 -----TSKWFGEGEKY--------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 672 (836)
Q Consensus 606 -----~s~~~g~~e~~--------i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~ 672 (836)
-+..+|...++ -..+|+.|.. +.||||||..| +...|..+.+++|+-...--|.....+
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~ 379 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIP 379 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCcee
Confidence 33344432221 2345666655 89999999998 667788888888876555455555556
Q ss_pred ccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhh----CCCC----CcccHHHHHH
Q 003253 673 ERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLS----PDVDFDAIAN 733 (836)
Q Consensus 673 ~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~~----Il~~~l~~----~~l~----~d~dl~~LA~ 733 (836)
.+|.||||||+. ..+.+.+.-|+ .++.+..|...+|.+ +...++.+ .+.. .+..+..|.+
T Consensus 380 vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~ 458 (560)
T COG3829 380 VDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR 458 (560)
T ss_pred eEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh
Confidence 889999999973 23444555577 578888898888866 44444443 2211 2223444444
Q ss_pred HcCCCcHHHHHHHHHHHHH
Q 003253 734 MTDGYSGSDLKNLCVTAAH 752 (836)
Q Consensus 734 ~t~G~sg~DL~~L~~~A~~ 752 (836)
..-.-+.++|.+++++|..
T Consensus 459 y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 459 YDWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCCchHHHHHHHHHHHHh
Confidence 4445567888888888875
No 159
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=3.1e-11 Score=140.93 Aligned_cols=167 Identities=20% Similarity=0.325 Sum_probs=111.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 644 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r 644 (836)
+.++|||++|+|||+|++++++++ +..++++++.++...+...........|....+ .+.+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 459999999999999999999987 567888988887665543322212223433333 46899999999885432
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC-C---CCCcHHHHhhccc--cccCCCCCHHHHHHHHHHHHh
Q 003253 645 ENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-P---FDLDEAVIRRLPR--RLMVNLPDAPNRAKILQVILA 718 (836)
Q Consensus 645 ~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~-~---~~Ld~~l~rRf~~--~I~v~~P~~~eR~~Il~~~l~ 718 (836)
..++.+..+++.+. . ..+-+|| |+|. | ..+++.|.+||.. ++.+..|+.+.|.+||+..+.
T Consensus 394 ---~tqeeLF~l~N~l~-------e--~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 ---STQEEFFHTFNTLH-------N--ANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred ---HHHHHHHHHHHHHH-------h--cCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 12233334444432 1 1223444 4544 3 3578899999954 567889999999999999998
Q ss_pred hCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 719 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 719 ~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
..++. ++.-++.|+....+ +.++|..++....
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 87766 45557778887664 5666666655443
No 160
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.34 E-value=2.2e-11 Score=145.04 Aligned_cols=230 Identities=20% Similarity=0.264 Sum_probs=136.1
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCccee
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 600 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v 600 (836)
.+|++++|++...+.+...+.. ..+.+++|+||||||||++|+++++.. +.+|+.+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~--------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS--------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 5789999999988877665532 122579999999999999999998765 3578899
Q ss_pred eccccc-------hhcccccHHH----HHHHHH----------HHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHH
Q 003253 601 SMSSIT-------SKWFGEGEKY----VKAVFS----------LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNE 659 (836)
Q Consensus 601 ~~s~l~-------s~~~g~~e~~----i~~lf~----------~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ 659 (836)
++..+. ..++|..... ....+. .......++|||||++.| +...+..+..++++
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLED 291 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHhh
Confidence 887642 1122221100 000000 011224579999999988 44444444444433
Q ss_pred HHHHhcC-----------------CcccCcccEEEEe-ccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCC
Q 003253 660 FMVNWDG-----------------LRTKDTERILVLA-ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED 721 (836)
Q Consensus 660 ll~~ld~-----------------~~~~~~~~vlVIa-TTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~ 721 (836)
-...+.+ +....+..+++|+ ||+.+..+++++++||. .+.+++++.++...|++..+...+
T Consensus 292 ~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 292 KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKIN 370 (615)
T ss_pred CeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcC
Confidence 1100000 0001123455554 56678889999999995 678899999999999999988765
Q ss_pred CC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 003253 722 LS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 800 (836)
Q Consensus 722 l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v 800 (836)
+. .+..++.|+..+. .++...+++..+...+..+... . .+ ......|+.+|+++++..-
T Consensus 371 v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~--------~-~~---------~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 371 VHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAE--------A-GK---------ENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred CCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHH--------h-cc---------CCCCeeECHHHHHHHhCCC
Confidence 43 3334455555543 3343334444443222222100 0 00 0122579999999999854
No 161
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.34 E-value=1.9e-11 Score=135.01 Aligned_cols=168 Identities=18% Similarity=0.245 Sum_probs=107.1
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CCcceeec
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISM 602 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~-------~~~i~v~~ 602 (836)
...|++|+|++++|..|...+.. +...++||.|++|||||++|++++..+. .||. .++
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 45799999999999999876652 3346899999999999999999987762 2333 111
Q ss_pred c-------ccchhc-------------------ccccHHHH------HHHHHHH---------HhcCCceEEEccchhhh
Q 003253 603 S-------SITSKW-------------------FGEGEKYV------KAVFSLA---------SKIAPSVIFVDEVDSML 641 (836)
Q Consensus 603 s-------~l~s~~-------------------~g~~e~~i------~~lf~~A---------~~~~psIL~IDEID~L~ 641 (836)
. .+.+.. .|.++..+ ...|... .+...++||||||+.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 0 000000 11111111 1111111 1223479999999988
Q ss_pred cCCCCCchHHHHHHHHHHHHHHh--cCCcccCcccEEEEeccCCCC-CCcHHHHhhccccccCCCCC-HHHHHHHHHHHH
Q 003253 642 GRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPD-APNRAKILQVIL 717 (836)
Q Consensus 642 ~~r~~~~~~~~~~~il~~ll~~l--d~~~~~~~~~vlVIaTTn~~~-~Ld~~l~rRf~~~I~v~~P~-~~eR~~Il~~~l 717 (836)
++..+..+...+++-...+ +|.....+.++++|+|.|..+ .+.++++.||...+.+..|+ .+.+.+|++...
T Consensus 157 ----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 157 ----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred ----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 4333443333332211111 333333446899999999765 59999999999999999887 699999998864
No 162
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.33 E-value=1.2e-11 Score=136.45 Aligned_cols=169 Identities=20% Similarity=0.315 Sum_probs=103.3
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCC--cceee
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINIS 601 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-------~~~--~i~v~ 601 (836)
..|++++|++.+++.|.-.+.. ....++||+|+||+|||++|+++|..+ +.+ +..+.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 5699999999999988754431 112589999999999999999999998 332 21111
Q ss_pred cc-c--------c---------------chhccccc--HHHH-HH--HHH--HHHhcCCceEEEccchhhhcCCCCCchH
Q 003253 602 MS-S--------I---------------TSKWFGEG--EKYV-KA--VFS--LASKIAPSVIFVDEVDSMLGRRENPGEH 650 (836)
Q Consensus 602 ~s-~--------l---------------~s~~~g~~--e~~i-~~--lf~--~A~~~~psIL~IDEID~L~~~r~~~~~~ 650 (836)
+. + + ....+|.. +..+ .. .|. ...+...++||||||+.+ ++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-----~~~~q 145 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-----EDHIV 145 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC-----CHHHH
Confidence 00 0 0 00112210 0000 00 011 001112369999999988 33333
Q ss_pred HHHHHHHHHHH--HHhcCCcccCcccEEEEeccCCCC-CCcHHHHhhccccccCCCCCH-HHHHHHHHHHHh
Q 003253 651 EAMRKMKNEFM--VNWDGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPDA-PNRAKILQVILA 718 (836)
Q Consensus 651 ~~~~~il~~ll--~~ld~~~~~~~~~vlVIaTTn~~~-~Ld~~l~rRf~~~I~v~~P~~-~eR~~Il~~~l~ 718 (836)
..+...+++-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.++++....
T Consensus 146 ~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 146 DLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred HHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 33333332211 112333333446899999999755 589999999998899987766 899999988543
No 163
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.33 E-value=1.7e-11 Score=131.71 Aligned_cols=141 Identities=23% Similarity=0.327 Sum_probs=92.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc------cchhcccccHHHH-H-------------------HHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKYV-K-------------------AVFSL 623 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~------l~s~~~g~~e~~i-~-------------------~lf~~ 623 (836)
.++||+||||||||++|+++|..+|.+++.++|.. +++.+.+.....+ . ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46999999999999999999999999999998754 3333332211111 1 11122
Q ss_pred HHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCccc-----CcccEEEEeccCCC-----CCCcHHHHh
Q 003253 624 ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----DTERILVLAATNRP-----FDLDEAVIR 693 (836)
Q Consensus 624 A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~-----~~~~vlVIaTTn~~-----~~Ld~~l~r 693 (836)
|.+ ...+|+||||+.+ ++..+..+..++++-...+.+.... .+.++.||+|+|.. ..+++++.+
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 223 3479999999987 3333333333332211111111100 12467899999975 257899999
Q ss_pred hccccccCCCCCHHHHHHHHHHHH
Q 003253 694 RLPRRLMVNLPDAPNRAKILQVIL 717 (836)
Q Consensus 694 Rf~~~I~v~~P~~~eR~~Il~~~l 717 (836)
|| ..+.++.|+.++..+|++...
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 688999999999999998864
No 164
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.33 E-value=4.1e-11 Score=131.75 Aligned_cols=183 Identities=23% Similarity=0.294 Sum_probs=121.1
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CCcceeecccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 605 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~-----~~~i~v~~s~l 605 (836)
.+|+|++|++.+.+.++..+.. + ...++||+||||+|||++++++++++. .+++.+++++.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~----------~----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~ 79 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE----------K----NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDE 79 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccc
Confidence 5799999999999999988752 1 113689999999999999999999873 23444443321
Q ss_pred chhcccccHHHHHHH-HHHHHh-----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEe
Q 003253 606 TSKWFGEGEKYVKAV-FSLASK-----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 679 (836)
Q Consensus 606 ~s~~~g~~e~~i~~l-f~~A~~-----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIa 679 (836)
. ....+... ...+.. ..+.+|+|||+|.+. ... ...+...++... ....+|.
T Consensus 80 ~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----~~~-------~~~L~~~le~~~----~~~~lIl 137 (319)
T PRK00440 80 R------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----SDA-------QQALRRTMEMYS----QNTRFIL 137 (319)
T ss_pred c------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----HHH-------HHHHHHHHhcCC----CCCeEEE
Confidence 1 11112222 222222 234699999999882 111 122333333322 2345566
Q ss_pred ccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 680 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 680 TTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
++|.+..+.+.+.+|+ ..+.|++++.++...+++.++.+.++. .+..+..++..+.| +.+.+.+.++.++
T Consensus 138 ~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 138 SCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred EeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 6777777888899998 468999999999999999999887764 45667888888776 3444444444443
No 165
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.32 E-value=9e-12 Score=142.78 Aligned_cols=192 Identities=23% Similarity=0.287 Sum_probs=141.3
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc--ceeecc-----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF--INISMS----- 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~--i~v~~s----- 603 (836)
.+|+|++|++.+.+.|...+.. .+-.++.||+||.|+|||++||.+|+.+++.- ..-.|.
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 5799999999999999999874 23447899999999999999999999996542 111111
Q ss_pred -ccchh-c---------ccccHHHHHHHHHHHH----hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 604 -SITSK-W---------FGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 604 -~l~s~-~---------~g~~e~~i~~lf~~A~----~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
.+... + ....-..++.+.+.+. +..+.|.+|||++.|. ...++.|+..+..
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS------------~~afNALLKTLEE-- 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS------------KQAFNALLKTLEE-- 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh------------HHHHHHHhccccc--
Confidence 11000 0 0112234566655553 3345799999999882 3455666655543
Q ss_pred ccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCC-cccHHHHHHHcCCCcHHHHHHHH
Q 003253 669 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~-d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
++..|.+|.+|..++.+++.+++|+ .++.|...+.++....|..++.++++.- +..+..+|+..+| +.+|...++
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 4578999999999999999999999 6889999999999999999999998874 4456777888877 667777777
Q ss_pred HHHHHH
Q 003253 748 VTAAHR 753 (836)
Q Consensus 748 ~~A~~~ 753 (836)
..|...
T Consensus 222 Dq~i~~ 227 (515)
T COG2812 222 DQAIAF 227 (515)
T ss_pred HHHHHc
Confidence 666554
No 166
>PRK06620 hypothetical protein; Validated
Probab=99.32 E-value=7.6e-11 Score=122.72 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=95.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCch
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 649 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~ 649 (836)
+.++||||||+|||+|++++++..+..++. .... .... .+ ...+|+||||+.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~----~~-~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEI----LE-KYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhH----Hh-cCCEEEEeccccc--------h
Confidence 579999999999999999999887653322 1000 0011 11 3379999999955 1
Q ss_pred HHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC--CcHHHHhhccc--cccCCCCCHHHHHHHHHHHHhhCCCC-C
Q 003253 650 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD--LDEAVIRRLPR--RLMVNLPDAPNRAKILQVILAKEDLS-P 724 (836)
Q Consensus 650 ~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~--Ld~~l~rRf~~--~I~v~~P~~~eR~~Il~~~l~~~~l~-~ 724 (836)
...+..+++.+. +.++.+||+++..|.. + +++++|+.. ++.+..|+.+.+..+++..+...++. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 123333333332 1244667766655544 5 889999953 68889999999999999988766654 4
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHH
Q 003253 725 DVDFDAIANMTDGYSGSDLKNLCVT 749 (836)
Q Consensus 725 d~dl~~LA~~t~G~sg~DL~~L~~~ 749 (836)
+.-++.|+....| +.+.+.++++.
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHH
Confidence 5567888888765 55566665554
No 167
>PRK05642 DNA replication initiation factor; Validated
Probab=99.30 E-value=1.9e-10 Score=121.44 Aligned_cols=158 Identities=20% Similarity=0.251 Sum_probs=103.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 646 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~ 646 (836)
+.++|+||+|+|||+|++++++++ +..++++++.++... ...+.+.... ..+|+|||++.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 579999999999999999999865 567777887765532 1122222222 3689999999874322
Q ss_pred CchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCC
Q 003253 647 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKED 721 (836)
Q Consensus 647 ~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~---Ld~~l~rRf~--~~I~v~~P~~~eR~~Il~~~l~~~~ 721 (836)
..++.+..+++.+. ..++.+|++++..|.. ..+.+++||. .++.+..|+.+++.++++..+...+
T Consensus 114 -~~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 -DWEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred -HHHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 11222333333321 1235566766655543 3689999994 5667789999999999996666555
Q ss_pred CC-CcccHHHHHHHcCCCcHHHHHHHHHHH
Q 003253 722 LS-PDVDFDAIANMTDGYSGSDLKNLCVTA 750 (836)
Q Consensus 722 l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A 750 (836)
+. ++.-++.|++..++ +.+.+..+++.-
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 212 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLERL 212 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 54 45557778887765 556666555543
No 168
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1e-10 Score=139.10 Aligned_cols=189 Identities=20% Similarity=0.238 Sum_probs=126.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce---eecc----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---ISMS---- 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~---v~~s---- 603 (836)
.+|++++|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.... -.|.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 5899999999999999988863 1233568999999999999999999998642210 0010
Q ss_pred ----------ccc--hhcccccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCC
Q 003253 604 ----------SIT--SKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 667 (836)
Q Consensus 604 ----------~l~--s~~~g~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~ 667 (836)
++. .......-..++.+.+.+.. ....||||||+|.|- ....+.|+..++..
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naLLk~LEep 147 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNALLKTLEEP 147 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHHHHHHhcC
Confidence 000 00001112234444443332 234699999999882 12234455555443
Q ss_pred cccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHH
Q 003253 668 RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNL 746 (836)
Q Consensus 668 ~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L 746 (836)
...+++|.+++..+.+.+.+.+|+ ..+.|..++..+...+++..+.+.++. ++..+..|+..+.| +.+++.++
T Consensus 148 ----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~ 221 (585)
T PRK14950 148 ----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENL 221 (585)
T ss_pred ----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 234566666777777888999998 578999999999999999988887764 44557788888776 66666666
Q ss_pred HHHH
Q 003253 747 CVTA 750 (836)
Q Consensus 747 ~~~A 750 (836)
++..
T Consensus 222 LekL 225 (585)
T PRK14950 222 LQQL 225 (585)
T ss_pred HHHH
Confidence 5543
No 169
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=6.9e-11 Score=139.82 Aligned_cols=187 Identities=18% Similarity=0.214 Sum_probs=125.4
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce----------e
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN----------I 600 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~----------v 600 (836)
.+|++++|++.+++.|+..+.. .+-++++||+||+|+|||++|+++|+.+.+.-.. -
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 5899999999999999998762 2334679999999999999999999999763100 0
Q ss_pred eccc------c-------chhcccc---cHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHH
Q 003253 601 SMSS------I-------TSKWFGE---GEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 660 (836)
Q Consensus 601 ~~s~------l-------~s~~~g~---~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~l 660 (836)
.|.. + +..+.+. ....++.+.+.+.. ....|++|||+|.|. . ...+.|
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----~-------~a~naL 147 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----T-------AAFNAF 147 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----H-------HHHHHH
Confidence 1110 0 0001111 12345555444422 234699999999882 1 123445
Q ss_pred HHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCc
Q 003253 661 MVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 739 (836)
Q Consensus 661 l~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~s 739 (836)
+..++.. +..+++|.+|+.+..+.+.+.+|+ ..+.|..++.++....+...+...+.. ++..++.|+..+.| +
T Consensus 148 LK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-d 221 (620)
T PRK14954 148 LKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-S 221 (620)
T ss_pred HHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 5555442 234555556667788889999998 689999999999999999988877754 45567888888876 4
Q ss_pred HHHHHHHHH
Q 003253 740 GSDLKNLCV 748 (836)
Q Consensus 740 g~DL~~L~~ 748 (836)
.+++.+.++
T Consensus 222 lr~al~eLe 230 (620)
T PRK14954 222 MRDAQSILD 230 (620)
T ss_pred HHHHHHHHH
Confidence 444444333
No 170
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=4.1e-11 Score=142.39 Aligned_cols=187 Identities=20% Similarity=0.239 Sum_probs=129.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce----eecc---
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN----ISMS--- 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~----v~~s--- 603 (836)
.+|++++|++.+.+.|+..+.. .+-.+++||+||+|+|||++|+++|+.+.+.... -.|.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~-------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALIS-------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 6799999999999999998863 1223589999999999999999999999653110 0111
Q ss_pred -----------cc--chhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcC
Q 003253 604 -----------SI--TSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 666 (836)
Q Consensus 604 -----------~l--~s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~ 666 (836)
++ ...........++.+...+... ...|+||||+|.| + ....+.|+..++.
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----t-------~~a~naLLK~LEe 147 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----S-------TAAFNALLKTLEE 147 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----C-------HHHHHHHHHHHhc
Confidence 11 0011122334667777666533 3469999999988 2 1234555555554
Q ss_pred CcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHH
Q 003253 667 LRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKN 745 (836)
Q Consensus 667 ~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~ 745 (836)
....+++|++|+.+..+.+.+++|+ ..+.|..++.++....+..++.+.++. .+..+..++..+.|.. +++.+
T Consensus 148 ----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l-r~A~~ 221 (620)
T PRK14948 148 ----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL-RDAES 221 (620)
T ss_pred ----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-HHHHH
Confidence 2355777777778888999999999 678999999999888888888776654 3445777888887744 44444
Q ss_pred HHH
Q 003253 746 LCV 748 (836)
Q Consensus 746 L~~ 748 (836)
+++
T Consensus 222 lLe 224 (620)
T PRK14948 222 LLD 224 (620)
T ss_pred HHH
Confidence 444
No 171
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=1.7e-10 Score=132.80 Aligned_cols=170 Identities=16% Similarity=0.264 Sum_probs=111.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeeccccchhcccccHH---HHHHHHHHHHhcCCceEEEccchhhh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVIFVDEVDSML 641 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l~s~~~g~~e~---~i~~lf~~A~~~~psIL~IDEID~L~ 641 (836)
++++|||++|+|||+|++++++++ +..++++++.++...+...... .+.. |.... ....+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~-~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEI-CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHh-ccCCEEEEecccccc
Confidence 569999999999999999999965 4677888887766554332111 1111 11111 246799999999884
Q ss_pred cCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC---CCcHHHHhhcc--ccccCCCCCHHHHHHHHHHH
Q 003253 642 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVI 716 (836)
Q Consensus 642 ~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~---~Ld~~l~rRf~--~~I~v~~P~~~eR~~Il~~~ 716 (836)
++. ..++.+..+++.+. + ..+.+|+++...|. .+++.+.+||. ..+.+..|+.++|.+|++..
T Consensus 220 ~k~---~~~e~lf~l~N~~~---~------~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YKE---KTNEIFFTIFNNFI---E------NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CCH---HHHHHHHHHHHHHH---H------cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 321 12333344444332 1 12334444333443 36789999995 46677899999999999999
Q ss_pred HhhCCC---CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 003253 717 LAKEDL---SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 717 l~~~~l---~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~a 754 (836)
+...++ -++..++.|+..+.| +++.+..+|..+...+
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a 327 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWS 327 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 987653 245557778888776 7778888877765443
No 172
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.26 E-value=1.2e-10 Score=121.78 Aligned_cols=168 Identities=20% Similarity=0.367 Sum_probs=103.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeeccccchhcccccHH-HHHHHHHHHHhcCCceEEEccchhhhcC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVIFVDEVDSMLGR 643 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l~s~~~g~~e~-~i~~lf~~A~~~~psIL~IDEID~L~~~ 643 (836)
..++||||+|+|||+|.+|++++. +..++++++.++...+...... .+.. |....+ ...+|+||+++.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~~-~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEE-FKDRLR-SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHHC-TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchh-hhhhhh-cCCEEEEecchhhcCc
Confidence 469999999999999999999875 5678888877765443221111 1112 222222 4579999999998422
Q ss_pred CCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC---CcHHHHhhccc--cccCCCCCHHHHHHHHHHHHh
Q 003253 644 RENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLPR--RLMVNLPDAPNRAKILQVILA 718 (836)
Q Consensus 644 r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~---Ld~~l~rRf~~--~I~v~~P~~~eR~~Il~~~l~ 718 (836)
. ..++.+..+++.+. . ..+.+|+++...|.. +++.+.+||.. .+.+..|+.+.|.+|++..+.
T Consensus 113 ~---~~q~~lf~l~n~~~-------~--~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 113 Q---RTQEELFHLFNRLI-------E--SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp H---HHHHHHHHHHHHHH-------H--TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHH-------h--hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 1 12333334444332 1 234455555555554 57899999865 677889999999999999999
Q ss_pred hCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 003253 719 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAH 752 (836)
Q Consensus 719 ~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~ 752 (836)
..++. ++.-.+.|+....+ +.++|..++..-..
T Consensus 181 ~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp HTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 88776 44446777777654 67777776665443
No 173
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.26 E-value=2.1e-11 Score=115.74 Aligned_cols=60 Identities=23% Similarity=0.391 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhccCCC-CeEEEEcCchhhhccC--------cchhhHHHHHHhcCCC---cEEEEeeeccCC
Q 003253 272 DKLLINTLFEVVFSESRSC-PFILFMKDAEKSIAGN--------SDSYSTFKSRLEKLPD---KVIVIGSHTHTD 334 (836)
Q Consensus 272 ~~~~i~~l~~~~~~~~~~~-p~Ilfi~ei~~~l~~~--------~~~~~~l~~~l~~l~g---~v~vIgs~~~~d 334 (836)
....+..+|+.+.. .. |+||||||+|.+.... ....+.|...|+.... +++|||++|..+
T Consensus 42 ~~~~i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~ 113 (132)
T PF00004_consen 42 SEQKIRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD 113 (132)
T ss_dssp HHHHHHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG
T ss_pred cccccccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChh
Confidence 46677778888777 55 9999999999988755 4556666677766654 699999999876
No 174
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.8e-10 Score=136.99 Aligned_cols=182 Identities=19% Similarity=0.277 Sum_probs=128.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|++++|++.+++.|...+.. .+.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 6899999999999999998862 2344679999999999999999999988542
Q ss_pred -----------cceeeccccchhcccccHHHHHHHHHHHHhcC----CceEEEccchhhhcCCCCCchHHHHHHHHHHHH
Q 003253 597 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 661 (836)
Q Consensus 597 -----------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~----psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll 661 (836)
++.+++.. ......++.+...+...+ ..|++|||+|.| +. ...+.|+
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----s~-------~a~naLL 142 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----SQ-------AAFNAFL 142 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----CH-------HHHHHHH
Confidence 12222110 011234566665554332 359999999988 21 2234455
Q ss_pred HHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcH
Q 003253 662 VNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSG 740 (836)
Q Consensus 662 ~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg 740 (836)
..++.. +..+++|.+|+.+..+-+.+++|+ ..+.|..++.++...+++..+.+.++. ++..+..|+..+.| +.
T Consensus 143 K~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dl 216 (614)
T PRK14971 143 KTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GM 216 (614)
T ss_pred HHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555442 244666667777788999999999 679999999999999999999888876 34457888888866 44
Q ss_pred HHHHHHHHH
Q 003253 741 SDLKNLCVT 749 (836)
Q Consensus 741 ~DL~~L~~~ 749 (836)
+++.++++.
T Consensus 217 r~al~~Lek 225 (614)
T PRK14971 217 RDALSIFDQ 225 (614)
T ss_pred HHHHHHHHH
Confidence 455444443
No 175
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.25 E-value=2.1e-11 Score=136.02 Aligned_cols=205 Identities=19% Similarity=0.263 Sum_probs=140.5
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecccc
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 605 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l 605 (836)
....+.+|+|......++.+.|.. +......|||.|.+||||..+|++|.+.+ +-|||+++|+.+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~------------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAl 285 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEV------------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAAL 285 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHH------------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeecccc
Confidence 356778899999998888887763 12333689999999999999999999888 679999999875
Q ss_pred c-----hhcccccHHHH-------HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcc
Q 003253 606 T-----SKWFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 673 (836)
Q Consensus 606 ~-----s~~~g~~e~~i-------~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~ 673 (836)
- +..+|.-.++. ..-|+.|.. +.||+|||..| +...|..+.+++|+--.+--|....-..
T Consensus 286 PesLlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 286 PESLLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred chHHHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 2 33444322211 223444444 79999999988 6777888888888754444444333457
Q ss_pred cEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHh----hCCCC----CcccHHHHHHH
Q 003253 674 RILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILA----KEDLS----PDVDFDAIANM 734 (836)
Q Consensus 674 ~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~~----Il~~~l~----~~~l~----~d~dl~~LA~~ 734 (836)
.|.|||+||+- ..+...+.-|+ .++.+..|...+|.+ +.+++++ ..+.. +...++.|.+.
T Consensus 358 DVRiIAATNRDL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 358 DVRVIAATNRDLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred EEEEEeccchhHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 79999999972 22334444466 467777888877755 3334443 33331 22234555555
Q ss_pred cCCCcHHHHHHHHHHHHHHH
Q 003253 735 TDGYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 735 t~G~sg~DL~~L~~~A~~~a 754 (836)
.-.-+.++|++++++|+..+
T Consensus 437 ~wPGNVRELen~veRavlla 456 (550)
T COG3604 437 EWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCcHHHHHHHHHHHHHHh
Confidence 55557899999999999966
No 176
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.5e-11 Score=128.77 Aligned_cols=143 Identities=13% Similarity=0.167 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc--chhhHHHHHHhcC-------CCcEEEEeeeccCCCccccCCCC
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--DSYSTFKSRLEKL-------PDKVIVIGSHTHTDNRKEKSHPG 343 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~--~~~~~l~~~l~~l-------~g~v~vIgs~~~~d~~~~~~~~~ 343 (836)
--.|+.||.-+++ ...-++|||||.|.+|+.++ -+.....+.|..+ +..|+++=+||++.
T Consensus 428 VTkiH~lFDWakk--S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg--------- 496 (630)
T KOG0742|consen 428 VTKIHKLFDWAKK--SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG--------- 496 (630)
T ss_pred HHHHHHHHHHHhh--cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc---------
Confidence 4568888988876 25679999999999999332 2223333444221 34788888899986
Q ss_pred CccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhhhhhhccCCc-
Q 003253 344 GLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMKGNL- 422 (836)
Q Consensus 344 ~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~~~~~~~~n~- 422 (836)
+.|.+++-|+...|+|+||-+|+|.++|+.++.+-..+-......
T Consensus 497 ----------------------------------dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~ 542 (630)
T KOG0742|consen 497 ----------------------------------DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPG 542 (630)
T ss_pred ----------------------------------chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCc
Confidence 668899999999999999999999999998887633221111110
Q ss_pred hh---HHHHhhccCCCcCc----hhhhhhhccccchHHHHHHHHH
Q 003253 423 NH---LRTVLGRSGLECEG----LETLCIRDQSLTNESAEKIVGW 460 (836)
Q Consensus 423 ~~---i~~~l~t~g~s~~D----L~~Lc~~~~~~s~~~ie~IV~~ 460 (836)
.+ -........+.+.| +++.+.+...|||.+|.++|..
T Consensus 543 ~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 543 KWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred hhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 01 11111222334444 4455556667999999999765
No 177
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.22 E-value=2.9e-11 Score=136.87 Aligned_cols=203 Identities=20% Similarity=0.268 Sum_probs=139.8
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc-
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 606 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~- 606 (836)
....+++|.....+++.+.+.. +.....+|||+|++||||..+|++|...+ +.|||.++|..+-
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~ 205 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK------------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE 205 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH
Confidence 3466789999999998888762 12334679999999999999999999888 5699999998752
Q ss_pred ----hhcccccHHH----H---HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccE
Q 003253 607 ----SKWFGEGEKY----V---KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI 675 (836)
Q Consensus 607 ----s~~~g~~e~~----i---~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~v 675 (836)
+..+|...+. . ...|+.|.. ++||||||..| +...|..+.+++++--..--|....-+.+|
T Consensus 206 ~l~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 206 NLLESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred HHHHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceee
Confidence 2344433221 1 225555555 89999999988 556677777777765444444444445789
Q ss_pred EEEeccCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhh----CCCC-CcccHHHHHHHcC---
Q 003253 676 LVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLS-PDVDFDAIANMTD--- 736 (836)
Q Consensus 676 lVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~~----Il~~~l~~----~~l~-~d~dl~~LA~~t~--- 736 (836)
.||++||.. ..+-+.+..|+ .++.+..|...+|.+ ++++++.+ .+.. ..++-+.++.+..
T Consensus 278 RiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~W 356 (464)
T COG2204 278 RIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDW 356 (464)
T ss_pred EEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC
Confidence 999999973 34667777799 689999999988877 44444443 3322 3444455554443
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 003253 737 GYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 737 G~sg~DL~~L~~~A~~~a 754 (836)
.-+.++|+|++++++...
T Consensus 357 PGNVREL~N~ver~~il~ 374 (464)
T COG2204 357 PGNVRELENVVERAVILS 374 (464)
T ss_pred ChHHHHHHHHHHHHHhcC
Confidence 334577777777777654
No 178
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.22 E-value=8.5e-11 Score=112.17 Aligned_cols=124 Identities=40% Similarity=0.637 Sum_probs=79.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccccHHH---HHHHHHHHHhcCCceEEEccchhhhc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKY---VKAVFSLASKIAPSVIFVDEVDSMLG 642 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~~e~~---i~~lf~~A~~~~psIL~IDEID~L~~ 642 (836)
..+++|+||||+|||++++.++..+ +.+++.+++.............. ....+..+....+.+|+|||++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~-- 96 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL-- 96 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh--
Confidence 3589999999999999999999998 88899998877544322211111 122233444557899999999977
Q ss_pred CCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC--CCcHHHHhhccccccCC
Q 003253 643 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF--DLDEAVIRRLPRRLMVN 702 (836)
Q Consensus 643 ~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~--~Ld~~l~rRf~~~I~v~ 702 (836)
..........++..+ .... ....++.+|+++|... .+++.+.+||+.++.++
T Consensus 97 ---~~~~~~~~~~~i~~~---~~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 97 ---SRGAQNALLRVLETL---NDLR--IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred ---hHHHHHHHHHHHHhc---Ccee--ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 111111112222221 1111 1135688888888776 78889999998666654
No 179
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.20 E-value=2.1e-10 Score=126.89 Aligned_cols=163 Identities=17% Similarity=0.302 Sum_probs=100.9
Q ss_pred chhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCCcc-------
Q 003253 533 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------- 598 (836)
Q Consensus 533 ~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-------~~~~i------- 598 (836)
|..|+|++.++..|.-.+.. +...++||.|++|+|||+++++++..+ +.++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred ccccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 77899999999887655542 223689999999999999999999877 33322
Q ss_pred --------------------------eeeccccchhcccccH--HHH--------HHHHHHHHhcCCceEEEccchhhhc
Q 003253 599 --------------------------NISMSSITSKWFGEGE--KYV--------KAVFSLASKIAPSVIFVDEVDSMLG 642 (836)
Q Consensus 599 --------------------------~v~~s~l~s~~~g~~e--~~i--------~~lf~~A~~~~psIL~IDEID~L~~ 642 (836)
.+.........+|... ..+ ..++. +...++||||||+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~---~A~~GvL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLA---RANRGILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcce---eccCCEEEecChHhC--
Confidence 1000000012222210 000 11112 223489999999988
Q ss_pred CCCCCchHHHHHHHHHHHH--HHhcCCcccCcccEEEEeccCCCC-CCcHHHHhhccccccCCCCCH-HHHHHHHHHHH
Q 003253 643 RRENPGEHEAMRKMKNEFM--VNWDGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLPDA-PNRAKILQVIL 717 (836)
Q Consensus 643 ~r~~~~~~~~~~~il~~ll--~~ld~~~~~~~~~vlVIaTTn~~~-~Ld~~l~rRf~~~I~v~~P~~-~eR~~Il~~~l 717 (836)
++..+..+..++++-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++...
T Consensus 144 ---~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 144 ---EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred ---CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhh
Confidence 3333333322222110 011232222346789999998655 699999999998889988865 88999998753
No 180
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.19 E-value=2.9e-10 Score=115.51 Aligned_cols=182 Identities=24% Similarity=0.336 Sum_probs=123.8
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C----CCcceeecccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G----ANFINISMSSI 605 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-~----~~~i~v~~s~l 605 (836)
..+.||+|.++....|.-.... + + ..+++|.||||+|||+-+.++|+++ | -.+..+++++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~----------g--n--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE----------G--N--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc----------C--C--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 4688999999999998876652 2 2 2489999999999999999999998 3 23556666653
Q ss_pred chhcccccHHHHHHHHHHHH-hcCC---ceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEecc
Q 003253 606 TSKWFGEGEKYVKAVFSLAS-KIAP---SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 681 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A~-~~~p---sIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTT 681 (836)
.+- .--...++ .|..-+ ..+| .||++||.|++ ..+.+.++++.+.-.. ....+..++
T Consensus 90 RGI--DvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFalaC 150 (333)
T KOG0991|consen 90 RGI--DVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALAC 150 (333)
T ss_pred ccc--HHHHHHHH-HHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhhh
Confidence 211 00011122 232222 2233 59999999999 5677888888776431 234566778
Q ss_pred CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHH
Q 003253 682 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNL 746 (836)
Q Consensus 682 n~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L 746 (836)
|..+.+-+.+.+|+ ..+.+...+..+...-+....+.+.+. .+..++.+.-.++|-....|.+|
T Consensus 151 N~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnL 215 (333)
T KOG0991|consen 151 NQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNL 215 (333)
T ss_pred cchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHH
Confidence 98888989999998 577887777777776666666666655 44556666666666555555544
No 181
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.18 E-value=6.4e-11 Score=129.04 Aligned_cols=142 Identities=16% Similarity=0.231 Sum_probs=98.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh--cccccH----------HHHHHHHHHHHhcCCceEEEccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVIFVDEV 637 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~--~~g~~e----------~~i~~lf~~A~~~~psIL~IDEI 637 (836)
++|||.||||||||++|+++|..++.+++.+++...... ++|... ......+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999988664332 344321 111223444544 4578999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHH--HHHHhcC-CcccCcccEEEEeccCCCC------------CCcHHHHhhccccccCC
Q 003253 638 DSMLGRRENPGEHEAMRKMKNE--FMVNWDG-LRTKDTERILVLAATNRPF------------DLDEAVIRRLPRRLMVN 702 (836)
Q Consensus 638 D~L~~~r~~~~~~~~~~~il~~--ll~~ld~-~~~~~~~~vlVIaTTn~~~------------~Ld~~l~rRf~~~I~v~ 702 (836)
|.. .+..+..++.+++. .+...+. -.......+.||||+|... .++++++.||..++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 977 44444444444442 1111111 1111334789999999854 37899999997778899
Q ss_pred CCCHHHHHHHHHHHH
Q 003253 703 LPDAPNRAKILQVIL 717 (836)
Q Consensus 703 ~P~~~eR~~Il~~~l 717 (836)
.|+.++-.+|+....
T Consensus 219 Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 219 YLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999998764
No 182
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.18 E-value=1.4e-10 Score=139.04 Aligned_cols=164 Identities=22% Similarity=0.330 Sum_probs=104.8
Q ss_pred chhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------------------
Q 003253 533 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------- 593 (836)
Q Consensus 533 ~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l------------------- 593 (836)
|.+|+|++.++..|.-.... ....+|||.|++|||||++|++|+..+
T Consensus 3 f~~ivGq~~~~~al~~~av~--------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVD--------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred cchhcChHHHHHHHHHHhhC--------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 77899999999888765542 122579999999999999999999988
Q ss_pred ----------------CCCcceeeccccchhccccc--HHHH--------HHHHHHHHhcCCceEEEccchhhhcCCCCC
Q 003253 594 ----------------GANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVIFVDEVDSMLGRRENP 647 (836)
Q Consensus 594 ----------------~~~~i~v~~s~l~s~~~g~~--e~~i--------~~lf~~A~~~~psIL~IDEID~L~~~r~~~ 647 (836)
..||+.+.+.......+|.. +..+ ..++..| ..+|||||||+.+ +.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-----~~ 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-----DD 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC-----CH
Confidence 24666665554333344432 1111 1111111 2379999999988 33
Q ss_pred chHHHHHHHHHHHH--HHhcCCcccCcccEEEEeccCCC-CCCcHHHHhhccccccCCCC-CHHHHHHHHHHHHh
Q 003253 648 GEHEAMRKMKNEFM--VNWDGLRTKDTERILVLAATNRP-FDLDEAVIRRLPRRLMVNLP-DAPNRAKILQVILA 718 (836)
Q Consensus 648 ~~~~~~~~il~~ll--~~ld~~~~~~~~~vlVIaTTn~~-~~Ld~~l~rRf~~~I~v~~P-~~~eR~~Il~~~l~ 718 (836)
..+..+..++++-. ....+.....+.++++|+|+|.. ..+.++++.||+..+.++.| +.+++.++++..+.
T Consensus 141 ~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 141 HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 33333222222110 01122222234678999999964 46889999999988888765 46788888876553
No 183
>PHA02244 ATPase-like protein
Probab=99.17 E-value=2.5e-10 Score=125.73 Aligned_cols=130 Identities=20% Similarity=0.282 Sum_probs=82.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhccc---ccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG---EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 646 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g---~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~ 646 (836)
.+|||+||||||||++|+++|..++.+|+.++...-.....| ........-|..|.+ ..++||||||+.+ .
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a-----~ 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDAS-----I 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcC-----C
Confidence 469999999999999999999999999999874210011111 111111122333333 4589999999977 3
Q ss_pred CchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-----------CCCcHHHHhhccccccCCCCCH
Q 003253 647 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-----------FDLDEAVIRRLPRRLMVNLPDA 706 (836)
Q Consensus 647 ~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-----------~~Ld~~l~rRf~~~I~v~~P~~ 706 (836)
+..+..+..++..-...+.+.....+.++.+|+|+|.+ ..+++++++|| ..+.++.|+.
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 33333333333221111111122234678999999973 46899999999 5789999873
No 184
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.17 E-value=1.5e-09 Score=121.38 Aligned_cols=171 Identities=19% Similarity=0.323 Sum_probs=114.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhc
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLG 642 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~ 642 (836)
+.+.++||||+|+|||+|++|++++. +..++++....+...++......-..-|..-+ .-.+++||+|+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 34569999999999999999999987 33466676666554443332222223444444 457999999999965
Q ss_pred CCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC---CcHHHHhhccc--cccCCCCCHHHHHHHHHHHH
Q 003253 643 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLPR--RLMVNLPDAPNRAKILQVIL 717 (836)
Q Consensus 643 ~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~---Ld~~l~rRf~~--~I~v~~P~~~eR~~Il~~~l 717 (836)
+.. .++..-.+++.+. ...+-+|+.+-..|.. +.+.+.+||.. ++.+.+|+.+.|..||+...
T Consensus 190 k~~---~qeefFh~FN~l~---------~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 190 KER---TQEEFFHTFNALL---------ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred Chh---HHHHHHHHHHHHH---------hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 532 2444455555553 1234455555555655 55899999965 56678999999999999988
Q ss_pred hhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 718 AKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 718 ~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
...++. ++.-...+|..... +.++|..++......
T Consensus 258 ~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~ 293 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAF 293 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHH
Confidence 777766 45556777776553 566666655554443
No 185
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.9e-10 Score=121.72 Aligned_cols=131 Identities=23% Similarity=0.372 Sum_probs=86.4
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc-hhccccc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG 613 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~-~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~-s~~~g~~ 613 (836)
++|++..|+.|--.|....++-..... ..+.-.-.+|||.||+|||||.||+.+|+.++.||..-++..+. ..|+|+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 678888888777666554333322111 11111235799999999999999999999999999999998874 3688887
Q ss_pred H-HHHHHHHHHH----HhcCCceEEEccchhhhcCCCCCchHH-HH-HHHHHHHHHHhcC
Q 003253 614 E-KYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEHE-AM-RKMKNEFMVNWDG 666 (836)
Q Consensus 614 e-~~i~~lf~~A----~~~~psIL~IDEID~L~~~r~~~~~~~-~~-~~il~~ll~~ld~ 666 (836)
- ..+..+...| .+...+||||||||.+..+..++.-.. .+ .-+.|.|+..+.|
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence 4 4445554433 334569999999999987654432111 11 2344556666654
No 186
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=9.9e-10 Score=122.40 Aligned_cols=189 Identities=17% Similarity=0.127 Sum_probs=121.6
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------Ccce-eec
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFIN-ISM 602 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~-------~~i~-v~~ 602 (836)
..+++++|++.+.+.|...+.. .+-++.+||+||+|+|||++|+++|+.+.+ +... ..|
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 4688999999999999998863 234467999999999999999999999854 1110 011
Q ss_pred ---c-----------ccc--hhcccc---------cHHHHHHHHHHHH----hcCCceEEEccchhhhcCCCCCchHHHH
Q 003253 603 ---S-----------SIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAM 653 (836)
Q Consensus 603 ---s-----------~l~--s~~~g~---------~e~~i~~lf~~A~----~~~psIL~IDEID~L~~~r~~~~~~~~~ 653 (836)
. ++. ...... .-..++.+..... .....|++|||+|.| +.
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----~~------ 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----NR------ 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----CH------
Confidence 0 110 000000 0122333333222 234579999999988 21
Q ss_pred HHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHH
Q 003253 654 RKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIAN 733 (836)
Q Consensus 654 ~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~ 733 (836)
...+.++..++.. +.+.++|..|+.+..+.+.+++|+ ..+.|++|+.++..+++........ .++..+..++.
T Consensus 156 -~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 156 -NAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred -HHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 2234455555442 244566666778888899999999 7999999999999999988543322 12334567777
Q ss_pred HcCCCcHHHHHHHHHHHH
Q 003253 734 MTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 734 ~t~G~sg~DL~~L~~~A~ 751 (836)
.+.| ++....+++....
T Consensus 229 ~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 229 RSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HcCC-CHHHHHHHHhcCc
Confidence 7776 4444445554443
No 187
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.14 E-value=2.3e-10 Score=126.66 Aligned_cols=176 Identities=16% Similarity=0.219 Sum_probs=105.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh-----cccccHHH-------HHHHHHHHHhcCCceEEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVIFV 634 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~-----~~g~~e~~-------i~~lf~~A~~~~psIL~I 634 (836)
..|||+|++||||+++|++|.... +.||+.++|..+... .+|..... ....|+.| ..++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 569999999999999999998876 479999999875322 22211110 11224433 3489999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHH
Q 003253 635 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 707 (836)
Q Consensus 635 DEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~ 707 (836)
|||+.| +...+..+.++++.-...-.+.......++.+|++|+.. ..+.+.+..||. .+.+..|...
T Consensus 100 dei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLR 173 (329)
T TIGR02974 100 DELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLR 173 (329)
T ss_pred CChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchh
Confidence 999998 444444443333321111111111223567889888753 346678888883 5667777777
Q ss_pred HHHH----HHHHHHhh----CCCC-----CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 003253 708 NRAK----ILQVILAK----EDLS-----PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 708 eR~~----Il~~~l~~----~~l~-----~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~a 754 (836)
+|.+ +++.++.+ .+.. .+..+..|....-..+.++|+++++.|+..+
T Consensus 174 eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 174 ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 7655 44444432 1211 2223444555544556678888888777643
No 188
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.13 E-value=1.1e-10 Score=130.04 Aligned_cols=205 Identities=21% Similarity=0.285 Sum_probs=129.7
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCCcceeecccc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSI 605 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~s~l 605 (836)
...+.+++|...-.+.+++.+.. ..+...+|||+|++||||+.+|++|+... +.|||.++|+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~------------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA------------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh------------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 45678899988888888777753 12223579999999999999999998543 679999999876
Q ss_pred chh-----cccccH-------HHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcc
Q 003253 606 TSK-----WFGEGE-------KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 673 (836)
Q Consensus 606 ~s~-----~~g~~e-------~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~ 673 (836)
... .+|..+ ..-..+|+.|.. ++||+|||..| ++..+..+.+++++-...--|.......
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~~~~~ 213 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQPRPV 213 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCCCcCC
Confidence 332 223221 222345665555 89999999999 6667777666666543332222333457
Q ss_pred cEEEEeccCCC--CCCcH--HHHhhccccccCCCCCHHHHHH----HHHHH----HhhCCCCCccc----HHHHHHHcCC
Q 003253 674 RILVLAATNRP--FDLDE--AVIRRLPRRLMVNLPDAPNRAK----ILQVI----LAKEDLSPDVD----FDAIANMTDG 737 (836)
Q Consensus 674 ~vlVIaTTn~~--~~Ld~--~l~rRf~~~I~v~~P~~~eR~~----Il~~~----l~~~~l~~d~d----l~~LA~~t~G 737 (836)
+|.+|++|+.. ..+-. .+.+|. ..+.+.+|+..+|.. ++..+ +.+.+.....+ ...|-...--
T Consensus 214 dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~p 292 (403)
T COG1221 214 DVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWP 292 (403)
T ss_pred CceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 78889888752 22333 455533 345667777777644 33333 34444442222 2333333333
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 003253 738 YSGSDLKNLCVTAAHRPI 755 (836)
Q Consensus 738 ~sg~DL~~L~~~A~~~ai 755 (836)
-+.++|+++++.++..+.
T Consensus 293 GNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 293 GNIRELKNLVERAVAQAS 310 (403)
T ss_pred CcHHHHHHHHHHHHHHhc
Confidence 467899999999988763
No 189
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=1.1e-09 Score=120.65 Aligned_cols=177 Identities=16% Similarity=0.269 Sum_probs=115.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch--h
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--K 608 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s--~ 608 (836)
.+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+-+....-+.+++.. .
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~ 67 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP 67 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc
Confidence 3689999999999999988752 234467899999999999999999998743211111111100 0
Q ss_pred cccc--cHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccC
Q 003253 609 WFGE--GEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 682 (836)
Q Consensus 609 ~~g~--~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn 682 (836)
..|. .-..++.+.+.+.. ....|++||++|.| + ....+.++..++. ++..+++|.+|+
T Consensus 68 ~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----~-------~~a~naLLK~LEe----pp~~t~~il~~~ 131 (313)
T PRK05564 68 INKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----T-------EQAQNAFLKTIEE----PPKGVFIILLCE 131 (313)
T ss_pred ccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----C-------HHHHHHHHHHhcC----CCCCeEEEEEeC
Confidence 0111 12235555554433 23469999999988 2 1223455555554 234566666667
Q ss_pred CCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcH
Q 003253 683 RPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 740 (836)
Q Consensus 683 ~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg 740 (836)
.++.+.+.+++|+ ..+.|..|+.++...++...+. .+ .+.....++..+.|-.+
T Consensus 132 ~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 132 NLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYN--DI-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred ChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhc--CC-CHHHHHHHHHHcCCCHH
Confidence 8899999999999 6899999999998887776543 22 23445667777766443
No 190
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.8e-09 Score=120.79 Aligned_cols=199 Identities=19% Similarity=0.290 Sum_probs=125.2
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC-----cceeeccccchhc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-----FINISMSSITSKW 609 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-----~i~v~~s~l~s~~ 609 (836)
.+.+.+....++...+...+. + ..| .++++|||||||||.+++.++.++.-+ +++++|..+.+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--ERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--CCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 367777888887777653221 1 233 469999999999999999999998433 7899996642211
Q ss_pred ---------------cccc-HHHHHHHHHHHHh-cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCc
Q 003253 610 ---------------FGEG-EKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 672 (836)
Q Consensus 610 ---------------~g~~-e~~i~~lf~~A~~-~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~ 672 (836)
.|.+ ......+++...+ ...-||+|||+|.|..+.. .++-.|..... ...
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~----~~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPG----ENK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcc----ccc
Confidence 1111 1223334433333 3457999999999965432 23333322222 225
Q ss_pred ccEEEEeccCCC---CCCcHHHHhhcc-ccccCCCCCHHHHHHHHHHHHhhC---CCCCcccHHHHHHHcCCC--cHHHH
Q 003253 673 ERILVLAATNRP---FDLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIANMTDGY--SGSDL 743 (836)
Q Consensus 673 ~~vlVIaTTn~~---~~Ld~~l~rRf~-~~I~v~~P~~~eR~~Il~~~l~~~---~l~~d~dl~~LA~~t~G~--sg~DL 743 (836)
.++.+|+.+|.. +.+++.+.++|. ..|.|++.+.+|...|++...... +.-.+.-++.+|..+.-. ..+--
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~a 234 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKA 234 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHH
Confidence 788999999986 468889998774 458899999999999999987643 111233344444333211 33444
Q ss_pred HHHHHHHHHHHHH
Q 003253 744 KNLCVTAAHRPIK 756 (836)
Q Consensus 744 ~~L~~~A~~~air 756 (836)
..+|+.|+..|-+
T Consensus 235 idilr~A~eiAe~ 247 (366)
T COG1474 235 IDILRRAGEIAER 247 (366)
T ss_pred HHHHHHHHHHHHh
Confidence 4667777766544
No 191
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.12 E-value=2.8e-10 Score=132.77 Aligned_cols=202 Identities=19% Similarity=0.267 Sum_probs=124.7
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH--------h---CCCcce
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE--------A---GANFIN 599 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~--------l---~~~~i~ 599 (836)
.+|++++|.....+.+++.+.. + .....+|||+|++||||+++|++|... . +.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~-----A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------Y-----ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 4688899999888888887752 1 122357999999999999999999987 3 679999
Q ss_pred eeccccch-----hcccccHHH--------HHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcC
Q 003253 600 ISMSSITS-----KWFGEGEKY--------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 666 (836)
Q Consensus 600 v~~s~l~s-----~~~g~~e~~--------i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~ 666 (836)
++|+.+.. ..+|..++. -..+|+.|. .++||||||+.| +...+..+.+++++--...-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 99987532 233322211 113455544 389999999998 444444444444331111111
Q ss_pred CcccCcccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhh----CCCCCccc-H--
Q 003253 667 LRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLSPDVD-F-- 728 (836)
Q Consensus 667 ~~~~~~~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~~----Il~~~l~~----~~l~~d~d-l-- 728 (836)
....-+.++.+|++||.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.+ .+..-..+ +
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 111123457888888763 12445666677 467788888877765 45555544 22221111 1
Q ss_pred -----HHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 729 -----DAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 729 -----~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
..|....-..+.++|++++++++..
T Consensus 435 ~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 435 LQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 2333333445678888888887763
No 192
>PRK09087 hypothetical protein; Validated
Probab=99.11 E-value=1.7e-09 Score=113.67 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=109.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCch
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 649 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~ 649 (836)
+.++|+||+|+|||+|+++++...+..+ ++...+.. .++..... .+|+|||++.+. ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAAAE---GPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhhhc---CeEEEECCCCCC------CC
Confidence 3599999999999999999998865543 33222211 11111111 589999999761 12
Q ss_pred HHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCCCC-
Q 003253 650 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS- 723 (836)
Q Consensus 650 ~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~---Ld~~l~rRf~--~~I~v~~P~~~eR~~Il~~~l~~~~l~- 723 (836)
+..+..+++.+. ..++.+||+++..|.. ..+.+++||. .++.+..|+.++|.++++..+...++.
T Consensus 103 ~~~lf~l~n~~~---------~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVR---------QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHH---------hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 333444444432 1234566666655543 3678999985 678889999999999999999887665
Q ss_pred CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 003253 724 PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 800 (836)
Q Consensus 724 ~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v 800 (836)
++..++.|++...+ +.+.+..++......+.. ..+++|...++++++.+
T Consensus 174 ~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~---------------------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRMER-SLFAAQTIVDRLDRLALE---------------------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHH---------------------------hCCCCCHHHHHHHHHhh
Confidence 55567888887763 333333333222211111 23678999999998875
No 193
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.10 E-value=3.4e-10 Score=125.33 Aligned_cols=200 Identities=19% Similarity=0.188 Sum_probs=118.4
Q ss_pred chhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch--
Q 003253 533 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-- 607 (836)
Q Consensus 533 ~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s-- 607 (836)
+++++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.||+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 567888887777777766531 1223569999999999999999998776 47999999987632
Q ss_pred ---hcccccHHH-------HHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEE
Q 003253 608 ---KWFGEGEKY-------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 677 (836)
Q Consensus 608 ---~~~g~~e~~-------i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlV 677 (836)
.++|..... ....+..| ..++||||||+.| +...+..+.+++++-...-.+.......++.|
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~Ri 144 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----PMLVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (326)
T ss_pred HHHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 222321110 01223333 3489999999998 33333333332222100000111111245788
Q ss_pred EeccCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhh----CCCC-----CcccHHHHHHHcCC
Q 003253 678 LAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAK----EDLS-----PDVDFDAIANMTDG 737 (836)
Q Consensus 678 IaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~~----Il~~~l~~----~~l~-----~d~dl~~LA~~t~G 737 (836)
|+||+.. ..+.+.+..|| ..+.+..|+..+|.+ +++.++.. .+.. ....+..|....-.
T Consensus 145 I~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WP 223 (326)
T PRK11608 145 VCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWP 223 (326)
T ss_pred EEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCC
Confidence 8888763 35677888888 356677777777755 44554432 1211 22234445555445
Q ss_pred CcHHHHHHHHHHHHHH
Q 003253 738 YSGSDLKNLCVTAAHR 753 (836)
Q Consensus 738 ~sg~DL~~L~~~A~~~ 753 (836)
.+.++|+++++.|+..
T Consensus 224 GNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 224 GNIRELKNVVERSVYR 239 (326)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 5667788888877754
No 194
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.10 E-value=3.9e-09 Score=113.41 Aligned_cols=130 Identities=18% Similarity=0.281 Sum_probs=90.4
Q ss_pred CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC------------CCCCcHHHHhhc
Q 003253 628 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR------------PFDLDEAVIRRL 695 (836)
Q Consensus 628 ~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~------------~~~Ld~~l~rRf 695 (836)
-|+||||||++.| +-....++++.+.. +-.++ ||.+||+ |+.++..++.|.
T Consensus 291 VpGVLFIDEvHmL-----DIE~FsFlnrAlEs-----------e~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl 353 (450)
T COG1224 291 VPGVLFIDEVHML-----DIECFSFLNRALES-----------ELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL 353 (450)
T ss_pred ecceEEEechhhh-----hHHHHHHHHHHhhc-----------ccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe
Confidence 4779999999877 32333333333321 11344 4556665 778999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003253 696 PRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGK 774 (836)
Q Consensus 696 ~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~ 774 (836)
.+|...+++.++.++|++..+..+.+. .+..++.|+.....-|-+--.+|+.-|...|-++
T Consensus 354 -lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r----------------- 415 (450)
T COG1224 354 -LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR----------------- 415 (450)
T ss_pred -eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh-----------------
Confidence 788888999999999999999888766 5566788887776666665566666665554443
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHhc
Q 003253 775 PAPALSGCADIRPLNMDDFKYAHERVC 801 (836)
Q Consensus 775 ~~~~~~~~~~~~~lt~eDf~~Al~~v~ 801 (836)
....|..+|++.|.+-+.
T Consensus 416 ---------g~~~V~~~dVe~a~~lF~ 433 (450)
T COG1224 416 ---------GSKRVEVEDVERAKELFL 433 (450)
T ss_pred ---------CCCeeehhHHHHHHHHHh
Confidence 224688899999887653
No 195
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.10 E-value=3.2e-10 Score=132.38 Aligned_cols=202 Identities=21% Similarity=0.292 Sum_probs=123.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 607 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s 607 (836)
.+|++++|.....+.+.+.+.. + .....+|||+|++||||+++|++|.... +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~-----A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------Y-----ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5788999999888888877752 1 1223579999999999999999999876 67999999987632
Q ss_pred -----hcccccHHH--------HHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCccc
Q 003253 608 -----KWFGEGEKY--------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 674 (836)
Q Consensus 608 -----~~~g~~e~~--------i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~ 674 (836)
..+|..++. -..+|+.|. .++||||||+.| +...+..+.+++++-....-|.....+.+
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 233322111 123455444 389999999998 44445444444433111111111112245
Q ss_pred EEEEeccCCCC-------CCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhC----CCC-CcccHHH-------H
Q 003253 675 ILVLAATNRPF-------DLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAKE----DLS-PDVDFDA-------I 731 (836)
Q Consensus 675 vlVIaTTn~~~-------~Ld~~l~rRf~~~I~v~~P~~~eR~~----Il~~~l~~~----~l~-~d~dl~~-------L 731 (836)
+.+|++|+..- .+.+.+..|+ ..+.+.+|+..+|.+ +++.++.+. .+. .+..+.. |
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHH
Confidence 68888887642 3444555577 456777888777765 455555442 211 1111222 4
Q ss_pred HHHcCCCcHHHHHHHHHHHHHH
Q 003253 732 ANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 732 A~~t~G~sg~DL~~L~~~A~~~ 753 (836)
....-..+.++|++++++++..
T Consensus 428 ~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 428 QRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HhCCCCchHHHHHHHHHHHHHh
Confidence 4444445668888888887764
No 196
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=1.5e-09 Score=121.64 Aligned_cols=183 Identities=20% Similarity=0.208 Sum_probs=118.3
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcc-----------e
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-----------N 599 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i-----------~ 599 (836)
.++++|+|++.+++.|.+.+.. .+.++.+||+||+|+||+++|.++|+.+-+.-- .
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 4789999999999999988863 244578999999999999999999998832110 0
Q ss_pred e----ec-----------cccc--hh-cccc--------cHHHHHHHHHHHH----hcCCceEEEccchhhhcCCCCCch
Q 003253 600 I----SM-----------SSIT--SK-WFGE--------GEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGE 649 (836)
Q Consensus 600 v----~~-----------s~l~--s~-~~g~--------~e~~i~~lf~~A~----~~~psIL~IDEID~L~~~r~~~~~ 649 (836)
+ .| +++. .. +.+. .-..++.+...+. ...+.|++|||+|.+ +
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~--- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----N--- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----C---
Confidence 0 00 1110 00 0000 1123444444332 335679999999988 2
Q ss_pred HHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHH
Q 003253 650 HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFD 729 (836)
Q Consensus 650 ~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~ 729 (836)
....+.|+..++.. +...++|.+|+.++.+.+.+++|+ ..+.|+.|+.++..+++..... ...+..+.
T Consensus 155 ----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~---~~~~~~~~ 222 (365)
T PRK07471 155 ----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGP---DLPDDPRA 222 (365)
T ss_pred ----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhcc---cCCHHHHH
Confidence 22334455555432 245677778888989999999999 6899999999999988877531 11222235
Q ss_pred HHHHHcCCCcHHHHHHHH
Q 003253 730 AIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 730 ~LA~~t~G~sg~DL~~L~ 747 (836)
.++..+.|-.+ ....++
T Consensus 223 ~l~~~s~Gsp~-~Al~ll 239 (365)
T PRK07471 223 ALAALAEGSVG-RALRLA 239 (365)
T ss_pred HHHHHcCCCHH-HHHHHh
Confidence 66777766444 333343
No 197
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.06 E-value=7.2e-10 Score=130.04 Aligned_cols=203 Identities=17% Similarity=0.229 Sum_probs=125.1
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch-
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 607 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s- 607 (836)
.+.+++|.....+.+.+.+.. ......+|||+|++||||+++|++|+... +.||+.++|..+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~------------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV------------VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH------------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 356788888888887777753 12223579999999999999999999886 57999999987632
Q ss_pred ----hcccccHHH-------HHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEE
Q 003253 608 ----KWFGEGEKY-------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 676 (836)
Q Consensus 608 ----~~~g~~e~~-------i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vl 676 (836)
..+|..... ....|+.| ..++||||||+.| +...+..+.+++++-....-+.......++.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL-----PLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC-----CHHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 223321110 01134433 3489999999999 4333433333332211000011111224678
Q ss_pred EEeccCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhC----CCC----CcccHHHHHHHcCC
Q 003253 677 VLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAKE----DLS----PDVDFDAIANMTDG 737 (836)
Q Consensus 677 VIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~~----Il~~~l~~~----~l~----~d~dl~~LA~~t~G 737 (836)
||++|+.. ..+.+.+..|+ ..+.+.+|+..+|.+ +++.++.+. +.. ....+..|....-.
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 403 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWP 403 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 89988863 34667777787 456778888777755 444444332 111 23334555555555
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 003253 738 YSGSDLKNLCVTAAHRPI 755 (836)
Q Consensus 738 ~sg~DL~~L~~~A~~~ai 755 (836)
.+.++|+++++.|+..+.
T Consensus 404 GNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 404 GNVRELEHVISRAALLAR 421 (509)
T ss_pred CcHHHHHHHHHHHHHhcC
Confidence 677899999998887653
No 198
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.05 E-value=9.2e-09 Score=105.53 Aligned_cols=188 Identities=21% Similarity=0.300 Sum_probs=134.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 607 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s 607 (836)
+.+.+|.|.+.+++.|.+... .|.+ ..|.++|||+|..||||++|++|+.++. +..+|.|+-.++.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~-------~F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~- 125 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTE-------QFAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA- 125 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHH-------HHHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh-
Confidence 789999999999999877554 2333 3567899999999999999999999888 5667888776653
Q ss_pred hcccccHHHHHHHHHHHHhcC-CceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 686 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~-psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~ 686 (836)
.+..+++..+..+ .-|||+|++- + ..++ .-...+...++|.....+.+|+|-||+|+.+.
T Consensus 126 --------~Lp~l~~~Lr~~~~kFIlFcDDLS-F-----e~gd-----~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHL 186 (287)
T COG2607 126 --------TLPDLVELLRARPEKFILFCDDLS-F-----EEGD-----DAYKALKSALEGGVEGRPANVLFYATSNRRHL 186 (287)
T ss_pred --------hHHHHHHHHhcCCceEEEEecCCC-C-----CCCc-----hHHHHHHHHhcCCcccCCCeEEEEEecCCccc
Confidence 2455666665543 4688999874 1 1111 12234555678877777899999999999654
Q ss_pred CcH----------------------HHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCC-cc--cHHH--HHHHcCCCc
Q 003253 687 LDE----------------------AVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSP-DV--DFDA--IANMTDGYS 739 (836)
Q Consensus 687 Ld~----------------------~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~-d~--dl~~--LA~~t~G~s 739 (836)
+++ .+-.||...+.|.+++.++-.+|+..+++..+++- +. +.+. -|..-.|-|
T Consensus 187 l~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RS 266 (287)
T COG2607 187 LPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRS 266 (287)
T ss_pred ccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 431 22339999999999999999999999999888763 22 2222 344556777
Q ss_pred HHHHHHHHH
Q 003253 740 GSDLKNLCV 748 (836)
Q Consensus 740 g~DL~~L~~ 748 (836)
|+--.+.++
T Consensus 267 GR~A~QF~~ 275 (287)
T COG2607 267 GRVAWQFIR 275 (287)
T ss_pred cHhHHHHHH
Confidence 765444443
No 199
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.05 E-value=2e-09 Score=124.36 Aligned_cols=161 Identities=24% Similarity=0.345 Sum_probs=102.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHH--------hcCCceEEEccchhh
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLAS--------KIAPSVIFVDEVDSM 640 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~--------~~~psIL~IDEID~L 640 (836)
.+-+||+||||-|||+||+.+|+..|+.++.+++++-.+ ...++...+.|- ...|.+|+|||||--
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 345899999999999999999999999999999987322 223333333222 247899999999922
Q ss_pred hcCCCCCchHHHHHHHHHHHHH----HhcCCcccCc----------ccEEEEeccCCCCCCcHHHHh--hccccccCCCC
Q 003253 641 LGRRENPGEHEAMRKMKNEFMV----NWDGLRTKDT----------ERILVLAATNRPFDLDEAVIR--RLPRRLMVNLP 704 (836)
Q Consensus 641 ~~~r~~~~~~~~~~~il~~ll~----~ld~~~~~~~----------~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P 704 (836)
...+.. ++..++. +..|-..... -.--|||.||.... |+++. -|..++.|..|
T Consensus 400 --------~~~~Vd-vilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p 468 (877)
T KOG1969|consen 400 --------PRAAVD-VILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPP 468 (877)
T ss_pred --------cHHHHH-HHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCC
Confidence 112222 2222221 1111111000 11356788887554 55544 68889999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCc-ccHHHHHHHcCCCcHHHHHHHHHHH
Q 003253 705 DAPNRAKILQVILAKEDLSPD-VDFDAIANMTDGYSGSDLKNLCVTA 750 (836)
Q Consensus 705 ~~~eR~~Il~~~l~~~~l~~d-~dl~~LA~~t~G~sg~DL~~L~~~A 750 (836)
...-..+-|+.++..+++..+ ..+..|+..+++ ||+.-++.-
T Consensus 469 ~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtL 511 (877)
T KOG1969|consen 469 SQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTL 511 (877)
T ss_pred ChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHH
Confidence 999999999999998887633 345556665554 555544443
No 200
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.3e-09 Score=117.47 Aligned_cols=73 Identities=32% Similarity=0.590 Sum_probs=62.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc-hhccccc-HHHHHHHHHHH----HhcCCceEEEccchhhhc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLG 642 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~-s~~~g~~-e~~i~~lf~~A----~~~~psIL~IDEID~L~~ 642 (836)
.+|||.||+|+|||.||+.||+.++.||.-.+|..+. ..|+|+. |..+..++..| .+.+.+|+||||+|.+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 4799999999999999999999999999999999985 3688876 55667777665 344679999999999974
No 201
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.04 E-value=4.9e-10 Score=132.35 Aligned_cols=204 Identities=19% Similarity=0.234 Sum_probs=122.8
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 606 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~ 606 (836)
..++++++|.....+.+.+.+... ......|||+|++||||+++|++|+..+ +.||+.++|..+.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 357889999998888888777531 1223579999999999999999999886 5799999998763
Q ss_pred hh-----cccccHHHH-------HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCccc
Q 003253 607 SK-----WFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 674 (836)
Q Consensus 607 s~-----~~g~~e~~i-------~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~ 674 (836)
.. .+|...+.. ...|..| ..++||||||+.| +...+..+.+++++-...-.+.......+
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----SPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----CHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 22 222211100 0112222 3589999999998 43333333333322100000111111235
Q ss_pred EEEEeccCCC-------CCCcHHHHhhccccccCCCCCHHHH----HHHHHHHHhhC----CCC---CcccHHHHHHHcC
Q 003253 675 ILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR----AKILQVILAKE----DLS---PDVDFDAIANMTD 736 (836)
Q Consensus 675 vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR----~~Il~~~l~~~----~l~---~d~dl~~LA~~t~ 736 (836)
+.+|+||+.. ..+.+.+..|+. .+.+.+|+..+| ..+++.++.+. +.. .+..+..|....-
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~W 410 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKW 410 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCC
Confidence 7888888753 346677777883 556666666555 34556665532 111 2233455555554
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 003253 737 GYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 737 G~sg~DL~~L~~~A~~~a 754 (836)
.-+.++|+++++.|+..+
T Consensus 411 PGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 411 PGNVRELENCLERTATLS 428 (534)
T ss_pred CChHHHHHHHHHHHHHhC
Confidence 557788888888887643
No 202
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.04 E-value=4e-09 Score=113.29 Aligned_cols=84 Identities=15% Similarity=0.174 Sum_probs=59.2
Q ss_pred CCeEEEEcCchhhhccC-----cchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCC
Q 003253 290 CPFILFMKDAEKSIAGN-----SDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPD 364 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~-----~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~r 364 (836)
.+.||||||+|.+..+. .+..+.+...++...+++++|++.+..+. +.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~-----------------------~~---- 157 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM-----------------------DY---- 157 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh-----------------------HH----
Confidence 35699999999865321 23445566666776778888877654331 00
Q ss_pred ccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 365 SFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 365 p~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
...++.+|.+||+..|.++.++.+++.+||+..+.+
T Consensus 158 -----------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 158 -----------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred -----------HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 013456788999999999999999999999977644
No 203
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=2.1e-09 Score=118.13 Aligned_cols=179 Identities=13% Similarity=0.213 Sum_probs=118.4
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc----------ceee
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----------INIS 601 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~----------i~v~ 601 (836)
.|++++|++.+++.|...+.. .+-++.+||+||+|+||+++|.++|..+-+.- ...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 488999999999999998863 23347899999999999999999999873221 1112
Q ss_pred ccccc---------hhc--------cc--------ccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHH
Q 003253 602 MSSIT---------SKW--------FG--------EGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEA 652 (836)
Q Consensus 602 ~s~l~---------s~~--------~g--------~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~ 652 (836)
.+++. ++. .| -.-..++.+...+.. ....|++||++|.| +.
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----~~----- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----NE----- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----CH-----
Confidence 22221 100 00 001234555544443 24579999999988 22
Q ss_pred HHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHH
Q 003253 653 MRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIA 732 (836)
Q Consensus 653 ~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA 732 (836)
...+.|+..++.. + +.++|.+|+.++.|-+.+++|+ ..+.|+.|+.++..+++......... +.+...++
T Consensus 139 --~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 139 --AAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred --HHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 2234445445442 2 3456667788999999999999 78999999999999999876432211 22346778
Q ss_pred HHcCCCcHHHH
Q 003253 733 NMTDGYSGSDL 743 (836)
Q Consensus 733 ~~t~G~sg~DL 743 (836)
..+.|-.+.-+
T Consensus 209 ~~a~Gs~~~al 219 (314)
T PRK07399 209 ALAQGSPGAAI 219 (314)
T ss_pred HHcCCCHHHHH
Confidence 87777554443
No 204
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.9e-09 Score=128.24 Aligned_cols=196 Identities=21% Similarity=0.356 Sum_probs=137.2
Q ss_pred chhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCcceeec
Q 003253 533 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISM 602 (836)
Q Consensus 533 ~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~~ 602 (836)
++-++|.++-..++.+.+.. +..++-+|.|+||+|||+++..+|... +..++.+++
T Consensus 169 lDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 44467887777766666652 222566899999999999999999876 455778888
Q ss_pred cccc--hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCc-hHHHHHHHHHHHHHHhcCCcccCcccEEEEe
Q 003253 603 SSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG-EHEAMRKMKNEFMVNWDGLRTKDTERILVLA 679 (836)
Q Consensus 603 s~l~--s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~-~~~~~~~il~~ll~~ld~~~~~~~~~vlVIa 679 (836)
+.++ .+|-|+.|..++.+.....+.++.|||||||+.+.+.....+ ...+.+-+.-.| .++.+-+||
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----------ARGeL~~IG 304 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----------ARGELRCIG 304 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----------hcCCeEEEE
Confidence 8774 368899999999999999999999999999999998765433 233333333333 235577787
Q ss_pred ccCC-----CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHcCCCc-----HHHHH
Q 003253 680 ATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMTDGYS-----GSDLK 744 (836)
Q Consensus 680 TTn~-----~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~----~l~-~d~dl~~LA~~t~G~s-----g~DL~ 744 (836)
+|.. .-.-|+++-||| ..|.+..|+.++-..||+-+-.+. ++. .|..+...+.++.-|. |.--.
T Consensus 305 ATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 305 ATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred eccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 7754 234678999999 689999999999999998876543 222 3444555555544333 33333
Q ss_pred HHHHHHHHH
Q 003253 745 NLCVTAAHR 753 (836)
Q Consensus 745 ~L~~~A~~~ 753 (836)
.|+.+|+.+
T Consensus 384 DLiDeA~a~ 392 (786)
T COG0542 384 DLLDEAGAR 392 (786)
T ss_pred HHHHHHHHH
Confidence 455555443
No 205
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.02 E-value=1e-09 Score=128.88 Aligned_cols=203 Identities=22% Similarity=0.283 Sum_probs=119.6
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 606 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~ 606 (836)
..+|++++|.....+.+.+.+... ......|||+|++||||+++|+++.... +.||+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL------------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 468999999988777666655420 1112459999999999999999998776 4799999998763
Q ss_pred hh-----cccccHH-------HHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCccc
Q 003253 607 SK-----WFGEGEK-------YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 674 (836)
Q Consensus 607 s~-----~~g~~e~-------~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~ 674 (836)
.. .+|.... ....+|+.|. .++||||||+.| +...+..+.++++.-...-.+.......+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----SPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----CHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 32 2332111 0122454443 489999999998 43444333333322100000111111246
Q ss_pred EEEEeccCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHh----hCCCC-Cccc---HHHHHHHc
Q 003253 675 ILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILA----KEDLS-PDVD---FDAIANMT 735 (836)
Q Consensus 675 vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~~----Il~~~l~----~~~l~-~d~d---l~~LA~~t 735 (836)
+.||+||+.. ..+.+.+..|+. .+.+..|+..+|.+ +++.++. +.+.. .... +..|....
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~ 418 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG 418 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC
Confidence 7888888753 236677888884 47777887777764 3334433 33221 1233 33343333
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 003253 736 DGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 736 ~G~sg~DL~~L~~~A~~~ 753 (836)
-.-+.++|++++..|+..
T Consensus 419 WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 344667777777777764
No 206
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.01 E-value=8.5e-10 Score=110.83 Aligned_cols=115 Identities=27% Similarity=0.363 Sum_probs=75.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC----CcceeeccccchhcccccHHHHHHHHHHH----HhcCCceEEEccch
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVD 638 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~----~~i~v~~s~l~s~~~g~~e~~i~~lf~~A----~~~~psIL~IDEID 638 (836)
+|...+||+||+|+|||.+|+++|..+.. +++.++|+++... +..+..+..+...+ ......||||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 35678999999999999999999999996 9999999987651 11111122222111 11122599999999
Q ss_pred hhhcCCCCCchHHHHHHHHHHHHHHhcCCccc-------CcccEEEEeccCCC
Q 003253 639 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRP 684 (836)
Q Consensus 639 ~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~-------~~~~vlVIaTTn~~ 684 (836)
...+. ........-..+.+.|+..+++.... +-.++++|+|+|--
T Consensus 79 Ka~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 79 KAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 99654 22223333346677777777654332 23678999999864
No 207
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.01 E-value=8.3e-09 Score=105.15 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=96.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCC------------------------cceeeccccchhcccccHHHHHHHHH
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFS 622 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~------------------------~i~v~~s~l~s~~~g~~e~~i~~lf~ 622 (836)
+.++.+||+||+|+|||++|+++++.+... +..+... +. ......++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQ--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cC--cCCHHHHHHHHH
Confidence 344689999999999999999999998432 1111110 00 011234555565
Q ss_pred HHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhcccc
Q 003253 623 LASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 698 (836)
Q Consensus 623 ~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~ 698 (836)
.+... ...||+|||+|.+- . ...+.|+..++.. +...++|.+|+.+..+.+++.+|+ ..
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~-----~-------~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~ 149 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN-----E-------AAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QV 149 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC-----H-------HHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EE
Confidence 55442 45699999999882 1 1234455555542 234566666777789999999999 68
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCC
Q 003253 699 LMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGY 738 (836)
Q Consensus 699 I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~ 738 (836)
+.|.+|+.++..++++.. +++ +..+..++..+.|.
T Consensus 150 ~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 150 LPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGGS 184 (188)
T ss_pred eeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCCC
Confidence 999999999998888775 333 44567777777653
No 208
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.01 E-value=4.2e-08 Score=105.38 Aligned_cols=192 Identities=15% Similarity=0.211 Sum_probs=115.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-Ccce--e-ec----ccc---chhccccc-----H-HHHHHHH----HHHHhcC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGA-NFIN--I-SM----SSI---TSKWFGEG-----E-KYVKAVF----SLASKIA 628 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~-~~i~--v-~~----s~l---~s~~~g~~-----e-~~i~~lf----~~A~~~~ 628 (836)
..++|+||+|+|||++++.++..+.. .++. + .+ .++ .....|.. . .....+. .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999998752 2221 1 11 111 00111211 1 1112222 2233456
Q ss_pred CceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC--CCCC----cHHHHhhccccccCC
Q 003253 629 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR--PFDL----DEAVIRRLPRRLMVN 702 (836)
Q Consensus 629 psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~--~~~L----d~~l~rRf~~~I~v~ 702 (836)
+.+|+|||++.+. . .. ...+..+. .........+.|+.+... ...+ ...+.+|+...++++
T Consensus 124 ~~vliiDe~~~l~-----~---~~-~~~l~~l~----~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT-----P---EL-LEELRMLS----NFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC-----H---HH-HHHHHHHh----CcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 7899999999771 1 11 11112221 111111222333333322 1111 124666887888999
Q ss_pred CCCHHHHHHHHHHHHhhCCC-----CCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 003253 703 LPDAPNRAKILQVILAKEDL-----SPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAP 777 (836)
Q Consensus 703 ~P~~~eR~~Il~~~l~~~~l-----~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~ 777 (836)
+.+.++..+++...+...+. -.+..++.|+..+.|+.. .|..+|..|...+..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~-------------------- 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLE-------------------- 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHc--------------------
Confidence 99999999999988875432 234567888999999765 5999999988876553
Q ss_pred CCCCCCCCccccHHHHHHHHHHhc
Q 003253 778 ALSGCADIRPLNMDDFKYAHERVC 801 (836)
Q Consensus 778 ~~~~~~~~~~lt~eDf~~Al~~v~ 801 (836)
....|+.++++.++..++
T Consensus 250 ------~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 ------EKREIGGEEVREVIAEID 267 (269)
T ss_pred ------CCCCCCHHHHHHHHHHhh
Confidence 224699999999998875
No 209
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.00 E-value=2.4e-09 Score=130.09 Aligned_cols=203 Identities=20% Similarity=0.285 Sum_probs=124.8
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 607 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s 607 (836)
.+|++++|.....+.+.+.+... .....+|||+|++|||||++|++|+..+ +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV------------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 46778999988888877766521 1222579999999999999999999876 57999999987532
Q ss_pred -----hcccccHH-------HHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccE
Q 003253 608 -----KWFGEGEK-------YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI 675 (836)
Q Consensus 608 -----~~~g~~e~-------~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~v 675 (836)
.++|.... .....|+.| ..++||||||+.+ +...+..+.+++++-....-+.......++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 22332110 111234433 3489999999988 433344333333321100111111122567
Q ss_pred EEEeccCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhC----CCC----CcccHHHHHHHcC
Q 003253 676 LVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAKE----DLS----PDVDFDAIANMTD 736 (836)
Q Consensus 676 lVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~~----Il~~~l~~~----~l~----~d~dl~~LA~~t~ 736 (836)
.+|++|+.. ..+...+..|+ ..+.+..|+..+|.+ +++.++.+. +.. ....+..|....-
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~W 591 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEW 591 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 889888763 23555666677 456778888888766 445554432 211 2333455555555
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 003253 737 GYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 737 G~sg~DL~~L~~~A~~~a 754 (836)
..+.++|+++++.|+..+
T Consensus 592 PGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 592 PGNVRELENVIERAVLLT 609 (686)
T ss_pred CCcHHHHHHHHHHHHHhC
Confidence 567788999888888653
No 210
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.00 E-value=4.8e-09 Score=116.07 Aligned_cols=169 Identities=24% Similarity=0.332 Sum_probs=111.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCCccee---
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINI--- 600 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-------~~~~i~v--- 600 (836)
..|..++|++.++..|.-... .....++||.|+.|+|||+++|+||.-| |++|.-=
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 457788999999887764432 3345789999999999999999999988 3322100
Q ss_pred ---ecc-------------------ccchhcccccHHH----------HH---HHHH---HHHhcCCceEEEccchhhhc
Q 003253 601 ---SMS-------------------SITSKWFGEGEKY----------VK---AVFS---LASKIAPSVIFVDEVDSMLG 642 (836)
Q Consensus 601 ---~~s-------------------~l~s~~~g~~e~~----------i~---~lf~---~A~~~~psIL~IDEID~L~~ 642 (836)
.|. .++..-.|.++.. +. ..|. .|+. ..+|+||||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~A-nRGIlYvDEvnlL-- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARA-NRGILYVDEVNLL-- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhc-cCCEEEEeccccc--
Confidence 000 0111122333331 11 0110 1111 2379999999988
Q ss_pred CCCCCchHHHHHHHHHH--HHHHhcCCcccCcccEEEEeccCCC-CCCcHHHHhhccccccCCCC-CHHHHHHHHHHHHh
Q 003253 643 RRENPGEHEAMRKMKNE--FMVNWDGLRTKDTERILVLAATNRP-FDLDEAVIRRLPRRLMVNLP-DAPNRAKILQVILA 718 (836)
Q Consensus 643 ~r~~~~~~~~~~~il~~--ll~~ld~~~~~~~~~vlVIaTTn~~-~~Ld~~l~rRf~~~I~v~~P-~~~eR~~Il~~~l~ 718 (836)
....+..+..++.+ -.++.+|+...-+.++++|+|+|.. ..|-+-|+.||...+.+..| +.++|.+|+++-+.
T Consensus 157 ---~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 157 ---DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred ---cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 43344444444444 2445667766667899999999975 46999999999998888654 78999999998876
Q ss_pred h
Q 003253 719 K 719 (836)
Q Consensus 719 ~ 719 (836)
.
T Consensus 234 f 234 (423)
T COG1239 234 F 234 (423)
T ss_pred h
Confidence 5
No 211
>CHL00181 cbbX CbbX; Provisional
Probab=98.99 E-value=2.9e-09 Score=115.73 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=61.1
Q ss_pred CCeEEEEcCchhhhcc------CcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCC
Q 003253 290 CPFILFMKDAEKSIAG------NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFP 363 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~------~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~ 363 (836)
.+-||||||+|.+... ..+..+.|...|+...++++||++++..+ +|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~-----------------------~~~--- 175 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR-----------------------MDK--- 175 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHH---
Confidence 4469999999985431 23455556666666667899999976432 110
Q ss_pred CccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 364 DSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 364 rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
..+.+.++.+||++.|+|+.++.+++.+||+..+.+
T Consensus 176 ------------~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 176 ------------FYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred ------------HHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 013346789999999999999999999999988765
No 212
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.99 E-value=9.9e-10 Score=121.93 Aligned_cols=138 Identities=28% Similarity=0.454 Sum_probs=95.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc--hhcccccHHHHH------------HHHHHHHhcCCceEEEc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--SKWFGEGEKYVK------------AVFSLASKIAPSVIFVD 635 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~--s~~~g~~e~~i~------------~lf~~A~~~~psIL~ID 635 (836)
.++||.||||+|||++|+++|..++.+|+.+.|..-. +..+|...-... -+|.... +|+++|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 5799999999999999999999999999999986421 222232211111 0111111 499999
Q ss_pred cchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc-ccCcccEEEEeccC-----CCCCCcHHHHhhccccccCCCC-CHHH
Q 003253 636 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDTERILVLAATN-----RPFDLDEAVIRRLPRRLMVNLP-DAPN 708 (836)
Q Consensus 636 EID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~-~~~~~~vlVIaTTn-----~~~~Ld~~l~rRf~~~I~v~~P-~~~e 708 (836)
||++. ++..+.++..++++....+.+.. ..-+..++||+|+| ....+++++++||...+.++.| +..+
T Consensus 120 EInra-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e 194 (329)
T COG0714 120 EINRA-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEE 194 (329)
T ss_pred ccccC-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHH
Confidence 99966 55555555555555444455555 44457889999999 4456899999999888999999 5555
Q ss_pred HHHHHHHH
Q 003253 709 RAKILQVI 716 (836)
Q Consensus 709 R~~Il~~~ 716 (836)
...++...
T Consensus 195 ~~~i~~~~ 202 (329)
T COG0714 195 ERIILARV 202 (329)
T ss_pred HHHHHHhC
Confidence 55555444
No 213
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.98 E-value=6.2e-09 Score=123.90 Aligned_cols=50 Identities=34% Similarity=0.495 Sum_probs=42.7
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~ 596 (836)
.-+++++|+++++..++..+.. . .+++|+||||||||++|+++|+.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~--------------~--~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ--------------K--RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc--------------C--CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 5688999999999999887762 1 389999999999999999999988543
No 214
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.98 E-value=2.1e-09 Score=101.36 Aligned_cols=127 Identities=33% Similarity=0.463 Sum_probs=80.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCC---cceeeccccchh--------------cccccHHHHHHHHHHHHhcCCceE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVI 632 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~---~i~v~~s~l~s~--------------~~g~~e~~i~~lf~~A~~~~psIL 632 (836)
..++|+||||||||++++.+|..+... ++.+++...... ...........++..+....+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 777777654321 112345567788889998888999
Q ss_pred EEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC-CCCCcHHHHhhccccccCCCC
Q 003253 633 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-PFDLDEAVIRRLPRRLMVNLP 704 (836)
Q Consensus 633 ~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~-~~~Ld~~l~rRf~~~I~v~~P 704 (836)
+|||++.+.... ................ ........+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAE-----QEALLLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHH-----HHHHHHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999884221 1111100000000000 012255788888886 344455555577776666543
No 215
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.98 E-value=1.5e-10 Score=118.12 Aligned_cols=46 Identities=41% Similarity=0.586 Sum_probs=37.3
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.|+||.|++.+|..|.-.... .+++||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG----------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG----------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC----------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHcC----------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 378999999999999877752 1689999999999999999999766
No 216
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.4e-09 Score=114.24 Aligned_cols=86 Identities=23% Similarity=0.434 Sum_probs=60.7
Q ss_pred CCceEEEccchhhhcCCCCCchHHHHH-HHHHHHHHHhcCCccc------CcccEEEEecc----CCCCCCcHHHHhhcc
Q 003253 628 APSVIFVDEVDSMLGRRENPGEHEAMR-KMKNEFMVNWDGLRTK------DTERILVLAAT----NRPFDLDEAVIRRLP 696 (836)
Q Consensus 628 ~psIL~IDEID~L~~~r~~~~~~~~~~-~il~~ll~~ld~~~~~------~~~~vlVIaTT----n~~~~Ld~~l~rRf~ 696 (836)
+.+||||||||.++.+....+. ..++ -+...++-.+.|..-. ...++++||+. ..|.+|-|++.-||+
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP 328 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP 328 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc
Confidence 3469999999999876542221 2222 2333455555543221 23678999885 568999999999999
Q ss_pred ccccCCCCCHHHHHHHHH
Q 003253 697 RRLMVNLPDAPNRAKILQ 714 (836)
Q Consensus 697 ~~I~v~~P~~~eR~~Il~ 714 (836)
-++++...+.++-..||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999888874
No 217
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.98 E-value=2.9e-09 Score=126.51 Aligned_cols=217 Identities=21% Similarity=0.271 Sum_probs=121.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CCcceeeccccchhcccccH--HHHH-H--HHH--HHHhcCCceEEEccchh
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGE--KYVK-A--VFS--LASKIAPSVIFVDEVDS 639 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~--~~~i~v~~s~l~s~~~g~~e--~~i~-~--lf~--~A~~~~psIL~IDEID~ 639 (836)
..+|||.|+||||||++|++++..+. .+|+.+.........+|... ..+. . .|. ...+...++||||||+.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 57899999999999999999999885 46888875433333444321 0000 0 000 00112337999999998
Q ss_pred hhcCCCCCchHHHHHHHHHHHHHHh--cCCcccCcccEEEEeccCCCC---CCcHHHHhhccccccCC-CCCHHHHHHHH
Q 003253 640 MLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRPF---DLDEAVIRRLPRRLMVN-LPDAPNRAKIL 713 (836)
Q Consensus 640 L~~~r~~~~~~~~~~~il~~ll~~l--d~~~~~~~~~vlVIaTTn~~~---~Ld~~l~rRf~~~I~v~-~P~~~eR~~Il 713 (836)
+ ++..+..+..++++-.+.+ +|.....+.++.||+|+|..+ .+.+.++.||...+.+. .|+.++|.+|+
T Consensus 96 l-----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil 170 (589)
T TIGR02031 96 L-----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIV 170 (589)
T ss_pred C-----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHH
Confidence 8 3333333333322211111 133223345789999999865 69999999998766664 56888899999
Q ss_pred HHHHhhCC----CCCcccHHHHH---HHcC--CCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCCCCCC
Q 003253 714 QVILAKED----LSPDVDFDAIA---NMTD--GYSGSDLKNLCVTAAHRPI---KEILEKEKKERAAAMAEGKPAPALSG 781 (836)
Q Consensus 714 ~~~l~~~~----l~~d~dl~~LA---~~t~--G~sg~DL~~L~~~A~~~ai---r~~~~~~~~~~~~a~~~~~~~~~~~~ 781 (836)
+..+.... .........+. +... -.+...+..++..+....+ |..+..-.-.++.+...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~g-------- 242 (589)
T TIGR02031 171 RRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHG-------- 242 (589)
T ss_pred HHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhC--------
Confidence 88763221 11111122222 1122 2234444455555443222 122222222333333333
Q ss_pred CCCCccccHHHHHHHHHHhc
Q 003253 782 CADIRPLNMDDFKYAHERVC 801 (836)
Q Consensus 782 ~~~~~~lt~eDf~~Al~~v~ 801 (836)
...|+.+|+..|..-+.
T Consensus 243 ---r~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 243 ---RTEVTEEDLKLAVELVL 259 (589)
T ss_pred ---CCCCCHHHHHHHHHHHh
Confidence 25689999999988664
No 218
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.97 E-value=1.3e-09 Score=131.53 Aligned_cols=202 Identities=17% Similarity=0.227 Sum_probs=122.3
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc-
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT- 606 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~- 606 (836)
.+|++++|.....+.+.+.+... ......|||+|++||||+++|++|+..+ +.||+.++|..+.
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA------------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 46888999888777777666521 1222469999999999999999999876 4799999998753
Q ss_pred ----hhcccccH----HHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEE
Q 003253 607 ----SKWFGEGE----KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 678 (836)
Q Consensus 607 ----s~~~g~~e----~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVI 678 (836)
+.++|... ......|+.| ..++||||||+.| +...+..+.+++++-...--+.....+.++.||
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 23333210 0001123333 3589999999998 444444443333321110001111112367889
Q ss_pred eccCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhC----CCC---CcccHHHHHHHcCCCcH
Q 003253 679 AATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAKE----DLS---PDVDFDAIANMTDGYSG 740 (836)
Q Consensus 679 aTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~~----Il~~~l~~~----~l~---~d~dl~~LA~~t~G~sg 740 (836)
+||+.. ..+.+.+..|+ ..+.+.+|...+|.+ +++.++.+. +.. .+..+..|....-..+.
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 540 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChH
Confidence 988863 34566666677 467778888887754 444444432 111 23334555555545567
Q ss_pred HHHHHHHHHHHHH
Q 003253 741 SDLKNLCVTAAHR 753 (836)
Q Consensus 741 ~DL~~L~~~A~~~ 753 (836)
++|+++++.|+..
T Consensus 541 reL~~~l~~~~~~ 553 (638)
T PRK11388 541 FELRSVIENLALS 553 (638)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887754
No 219
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.97 E-value=8.1e-11 Score=113.72 Aligned_cols=112 Identities=26% Similarity=0.430 Sum_probs=68.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch--hcccccHH------HHHHHHHHHHhcCCceEEEccchhhhc
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGEK------YVKAVFSLASKIAPSVIFVDEVDSMLG 642 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s--~~~g~~e~------~i~~lf~~A~~~~psIL~IDEID~L~~ 642 (836)
+|||+||||||||++|+.+|..++.+++.+.++.... .+.|.-.- .....+..+.+ .+.+++||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 5899999999999999999999999999888765211 11111100 00000011111 5689999999966
Q ss_pred CCCCCchHHHHHHHHHHHHHHhcCCccc---------Ccc------cEEEEeccCCCC----CCcHHHHhhc
Q 003253 643 RRENPGEHEAMRKMKNEFMVNWDGLRTK---------DTE------RILVLAATNRPF----DLDEAVIRRL 695 (836)
Q Consensus 643 ~r~~~~~~~~~~~il~~ll~~ld~~~~~---------~~~------~vlVIaTTn~~~----~Ld~~l~rRf 695 (836)
+ ..++..++..++.-... ... .+.+|+|+|... .+++++++||
T Consensus 78 ---~-------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---P-------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---C-------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 2 23334444433322111 111 389999999988 8999999998
No 220
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.96 E-value=7e-09 Score=121.58 Aligned_cols=175 Identities=23% Similarity=0.285 Sum_probs=102.6
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-Ccce---eeccccchhcc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFIN---ISMSSITSKWF 610 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~-~~i~---v~~s~l~s~~~ 610 (836)
+|.|++.+|..+.-.+....... ...+...+...+|||+|+||||||++|+++++.+.. .|+. .++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~--~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKN--LPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccc--cCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 47889999887776665421110 001111122347999999999999999999998743 2322 12222211111
Q ss_pred ccc---HHHH-HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHh--cCCcccCcccEEEEeccCCC
Q 003253 611 GEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 611 g~~---e~~i-~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~l--d~~~~~~~~~vlVIaTTn~~ 684 (836)
... +..+ ...+.. ...++++|||++.+ ++..+..+..++++-...+ .|....-+.++.||||+|..
T Consensus 282 ~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALVL---ADNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEEe---cCCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 000 0000 011112 23489999999988 3333443333332211111 23333334678999999975
Q ss_pred C-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHhh
Q 003253 685 F-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAK 719 (836)
Q Consensus 685 ~-------------~Ld~~l~rRf~~~I~v-~~P~~~eR~~Il~~~l~~ 719 (836)
. .|++++++|||..+.+ +.|+.+...+|.++.+..
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 2 5899999999876544 789999999999987653
No 221
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=9.1e-09 Score=113.80 Aligned_cols=154 Identities=18% Similarity=0.224 Sum_probs=101.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCCcc--eeec--------------cccch---hccc--ccHHHHHHHHHHHH
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI--NISM--------------SSITS---KWFG--EGEKYVKAVFSLAS 625 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i--~v~~--------------s~l~s---~~~g--~~e~~i~~lf~~A~ 625 (836)
+.++.+||+||+|+|||++|+++|+.+.+.-- .-.| +++.. ...+ -.-..++.+...+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999999999854210 0011 11110 0000 12235666655554
Q ss_pred h----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccC
Q 003253 626 K----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMV 701 (836)
Q Consensus 626 ~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v 701 (836)
. ....|++||++|.| + ....+.|+..++. ++.++++|.+|+.++.+.+.+++|+ ..+.|
T Consensus 100 ~~~~~~~~kv~iI~~a~~m-----~-------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~ 162 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAM-----N-------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQQAC 162 (328)
T ss_pred hccccCCCeEEEECChhhC-----C-------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-eeeeC
Confidence 3 34569999999998 2 2234455555544 3367888899999999999999999 67999
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcH
Q 003253 702 NLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 740 (836)
Q Consensus 702 ~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg 740 (836)
++|+.++..+.+..... ...+.+...++..+.|-.+
T Consensus 163 ~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 163 PLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPL 198 (328)
T ss_pred CCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHH
Confidence 99999988888876431 1223344566667776444
No 222
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.95 E-value=4.7e-09 Score=115.59 Aligned_cols=148 Identities=20% Similarity=0.280 Sum_probs=95.5
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 594 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~-------------------- 594 (836)
++.+.+.....+...+.. . .+-++.+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~----------~--~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE----------S--GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh----------c--CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 455666666666666652 1 12224599999999999999999999996
Q ss_pred ----CCcceeeccccchhcccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcC
Q 003253 595 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 666 (836)
Q Consensus 595 ----~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~ 666 (836)
..|+.++.++..... -....++.+-...... +..||+|||+|.|- .. ..+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt-----~~-------A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT-----ED-------AANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh-----HH-------HHHHHHHHhcc
Confidence 355666665533211 1223344444433332 45799999999992 22 22333333332
Q ss_pred CcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHH
Q 003253 667 LRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKIL 713 (836)
Q Consensus 667 ~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il 713 (836)
++.+..+|.+||.+..+-+.+++|+ ..+.|.+|+...+....
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHh
Confidence 3467888889999999999999999 67888775544444333
No 223
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1.6e-08 Score=112.28 Aligned_cols=154 Identities=15% Similarity=0.106 Sum_probs=102.7
Q ss_pred cchhhhc-hHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc--ceee-------
Q 003253 532 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF--INIS------- 601 (836)
Q Consensus 532 ~~~di~G-~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~--i~v~------- 601 (836)
.|+.|.| ++.+.+.|+..+.. .+.++.+||+||+|+||+++|+++|+.+-++- -...
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 5788888 88899999888752 34457789999999999999999999874321 0000
Q ss_pred -------ccccch-hcccc--cHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCC
Q 003253 602 -------MSSITS-KWFGE--GEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 667 (836)
Q Consensus 602 -------~s~l~s-~~~g~--~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~ 667 (836)
.+++.- ...|. .-..++.+.+.+.. ....|++|||+|.+ + ....+.|+..++.
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----~-------~~a~NaLLK~LEE- 136 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----T-------ASAANSLLKFLEE- 136 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----C-------HHHHHHHHHHhcC-
Confidence 011100 00011 12234555444432 23469999999988 2 2233455555554
Q ss_pred cccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHH
Q 003253 668 RTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV 715 (836)
Q Consensus 668 ~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~ 715 (836)
++..+++|.+|+.+..+.+.+++|+ ..++|..|+.++..++++.
T Consensus 137 ---Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 ---PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ---CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 3356777778888889999999999 7899999999888766653
No 224
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.94 E-value=6.5e-10 Score=111.34 Aligned_cols=118 Identities=22% Similarity=0.388 Sum_probs=70.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch-----hcccccHH-------HHHHHHHHHHhcCCceEEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEK-------YVKAVFSLASKIAPSVIFV 634 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s-----~~~g~~e~-------~i~~lf~~A~~~~psIL~I 634 (836)
.+|||+|++||||+.+|++|.+.. +.||+.++|+.+.. ..+|.... ....+|+.|.. ++|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANG---GTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccc---eEEee
Confidence 679999999999999999999876 57999999987632 23333211 12256666665 99999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-------CCCcHHHHhhc
Q 003253 635 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRL 695 (836)
Q Consensus 635 DEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-------~~Ld~~l~rRf 695 (836)
|||+.| +...|..+.+++++-....-+.......++.||+||+.. ..+.+.+..|+
T Consensus 100 d~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL 162 (168)
T PF00158_consen 100 DEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRL 162 (168)
T ss_dssp ETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHH
T ss_pred cchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCChHHHHHHh
Confidence 999999 444444443333321111111111223578999999863 34555555555
No 225
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.93 E-value=2.7e-10 Score=107.30 Aligned_cols=113 Identities=31% Similarity=0.446 Sum_probs=67.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeecc-cc-chhccccc----HH-----HHHHHHHHHHhcCCceEEEccchh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SI-TSKWFGEG----EK-----YVKAVFSLASKIAPSVIFVDEVDS 639 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s-~l-~s~~~g~~----e~-----~i~~lf~~A~~~~psIL~IDEID~ 639 (836)
++||.|+||+|||++|+++|+.++..|.+|.+. ++ -+...|.. .. .-.-+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999988764 22 12222211 00 001112 25999999997
Q ss_pred hhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC-----CCcHHHHhhc
Q 003253 640 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF-----DLDEAVIRRL 695 (836)
Q Consensus 640 L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~-----~Ld~~l~rRf 695 (836)
. .+..+.++.+++++-.+.+++....-+.+++||||-|..+ .|+++++.||
T Consensus 74 a-----ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 74 A-----PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp S------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred C-----CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 6 5566677777777666666666555667899999999865 5889999998
No 226
>PRK04132 replication factor C small subunit; Provisional
Probab=98.92 E-value=8.7e-09 Score=124.99 Aligned_cols=161 Identities=20% Similarity=0.225 Sum_probs=118.2
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCCcceeeccccchhcccccHHHHHHHHHHHHhcC------CceEE
Q 003253 567 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVIF 633 (836)
Q Consensus 567 ~p~~~vLL~G--PpGtGKT~LA~alA~~l-----~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~------psIL~ 633 (836)
-|.-+-+..| |++.|||++|+++|+++ +.+++.+++++..+ -..++.+...+.... ..|+|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 3444567779 99999999999999998 56899999987422 124565554443322 36999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHH
Q 003253 634 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKIL 713 (836)
Q Consensus 634 IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il 713 (836)
|||+|.| +...+.+ |+..++. .+.++.+|++||.+..+.+++++|| ..+.|+.|+.++....+
T Consensus 636 IDEaD~L-----t~~AQnA-------LLk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADAL-----TQDAQQA-------LRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccC-----CHHHHHH-------HHHHhhC----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 9999999 3333333 3333332 2357889999999999999999999 78999999999999999
Q ss_pred HHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 714 QVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 714 ~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
+.++.++++. ++..+..++..++|-....| ++++.++
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AI-n~Lq~~~ 736 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAI-NILQAAA 736 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 9998887765 56678889999888555444 4444433
No 227
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.90 E-value=1.2e-08 Score=115.31 Aligned_cols=122 Identities=24% Similarity=0.304 Sum_probs=75.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--Ccceeec-----c----ccchhc----cccc--HHHHHHHHHHHHhc--CCc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGA--NFINISM-----S----SITSKW----FGEG--EKYVKAVFSLASKI--APS 630 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~--~~i~v~~-----s----~l~s~~----~g~~--e~~i~~lf~~A~~~--~ps 630 (836)
.+++|+||||||||++|+++|..+.. .+..+.+ . +++..+ .|.. .+.+..+...|... .|.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCc
Confidence 57999999999999999999998843 2222221 1 122111 1110 12233445566554 479
Q ss_pred eEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCC------------------cccCcccEEEEeccCCCC----CCc
Q 003253 631 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL------------------RTKDTERILVLAATNRPF----DLD 688 (836)
Q Consensus 631 IL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~------------------~~~~~~~vlVIaTTn~~~----~Ld 688 (836)
|||||||++-- ..+++.+++..++.- .-.-+.++.||||+|..+ .+|
T Consensus 275 vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 275 VFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred EEEEehhhccC-----------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 99999999651 123334444433310 112347899999999877 699
Q ss_pred HHHHhhccccccCCC
Q 003253 689 EAVIRRLPRRLMVNL 703 (836)
Q Consensus 689 ~~l~rRf~~~I~v~~ 703 (836)
.+++||| ..|.+.+
T Consensus 344 ~AlrRRF-~fi~i~p 357 (459)
T PRK11331 344 YALRRRF-SFIDIEP 357 (459)
T ss_pred HHHHhhh-heEEecC
Confidence 9999999 4566653
No 228
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.89 E-value=1.6e-08 Score=110.65 Aligned_cols=102 Identities=21% Similarity=0.297 Sum_probs=57.4
Q ss_pred CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC------------CCCCcHHHHhhc
Q 003253 628 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR------------PFDLDEAVIRRL 695 (836)
Q Consensus 628 ~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~------------~~~Ld~~l~rRf 695 (836)
-|+||||||++.| +.....++++.++ . +-.++ ||.+||+ |+.++..++.|+
T Consensus 278 vpGVLFIDEvHmL-----DiEcFsfLnralE-------s----~~sPi-iIlATNRg~~~irGt~~~sphGiP~DlLDRl 340 (398)
T PF06068_consen 278 VPGVLFIDEVHML-----DIECFSFLNRALE-------S----ELSPI-IILATNRGITKIRGTDIISPHGIPLDLLDRL 340 (398)
T ss_dssp EE-EEEEESGGGS-----BHHHHHHHHHHHT-------S----TT--E-EEEEES-SEEE-BTTS-EEETT--HHHHTTE
T ss_pred ecceEEecchhhc-----cHHHHHHHHHHhc-------C----CCCcE-EEEecCceeeeccCccCcCCCCCCcchHhhc
Confidence 3789999999988 3222233333222 1 22344 4555664 677899999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 003253 696 PRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 696 ~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
.+|...+++.++..+|++..++.+++. .+..++.|+......+-+--.+|+
T Consensus 341 -lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi 392 (398)
T PF06068_consen 341 -LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLI 392 (398)
T ss_dssp -EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCH
T ss_pred -EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhh
Confidence 788999999999999999999988876 344455665554444443333333
No 229
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.89 E-value=2.1e-08 Score=109.01 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=60.2
Q ss_pred CCeEEEEcCchhhhcc------CcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCC
Q 003253 290 CPFILFMKDAEKSIAG------NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFP 363 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~------~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~ 363 (836)
.+.||||||++.+... ..+..+.|...|+...++++||++++... +|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~-----------------------~~~--- 174 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR-----------------------MDS--- 174 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH-----------------------HHH---
Confidence 4579999999975321 13334455566666667899999987542 110
Q ss_pred CccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 364 DSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 364 rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
....+.++.+||+..|+++.++.+++..|++..+.+
T Consensus 175 ------------~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 175 ------------FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred ------------HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 013467789999999999999999999999977755
No 230
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.88 E-value=4.5e-08 Score=111.61 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=90.2
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--Ccceeecc-ccchhcccc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFGE 612 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~--~~i~v~~s-~l~s~~~g~ 612 (836)
++|.+++.+.+...+.. ..++||.||||||||++|+++|..++. +|..+.+. ......+|.
T Consensus 22 i~gre~vI~lll~aala----------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 22 LYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred ccCcHHHHHHHHHHHcc----------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 56777777766655431 157999999999999999999998743 45544332 112233332
Q ss_pred c-HHHH--HHHHHHHHhc---CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC-
Q 003253 613 G-EKYV--KAVFSLASKI---APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF- 685 (836)
Q Consensus 613 ~-e~~i--~~lf~~A~~~---~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~- 685 (836)
. -... ..-|...... ...+||+|||..+ ++..+..+..++++-.....+-...-+.++++++| |...
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LPE 159 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELPE 159 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCcc
Confidence 1 0000 1122211111 2249999999866 44444444444433222222222222244555554 6422
Q ss_pred --CCcHHHHhhccccccCCCCC-HHHHHHHHHHH
Q 003253 686 --DLDEAVIRRLPRRLMVNLPD-APNRAKILQVI 716 (836)
Q Consensus 686 --~Ld~~l~rRf~~~I~v~~P~-~~eR~~Il~~~ 716 (836)
...+++..||-..+.+++|+ .++..+++...
T Consensus 160 ~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 160 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 24458999998888999987 45657777653
No 231
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.86 E-value=7.5e-08 Score=100.62 Aligned_cols=180 Identities=19% Similarity=0.321 Sum_probs=126.5
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CCcceeeccc----
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSS---- 604 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-~--~~~i~v~~s~---- 604 (836)
+++.+.+.++....|+.... .....++|+|||+|+||-+.+.++.+++ | .+=.++....
T Consensus 11 sl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 56667788888888877554 1223589999999999999999999888 3 2211221111
Q ss_pred ---------cchhc--------cccc-HHHHHHHHHHHHhcC---------CceEEEccchhhhcCCCCCchHHHHHHHH
Q 003253 605 ---------ITSKW--------FGEG-EKYVKAVFSLASKIA---------PSVIFVDEVDSMLGRRENPGEHEAMRKMK 657 (836)
Q Consensus 605 ---------l~s~~--------~g~~-e~~i~~lf~~A~~~~---------psIL~IDEID~L~~~r~~~~~~~~~~~il 657 (836)
+.+.| .|.. .-.+..+.....+.+ -.|++|-|+|.| ....|.++++.+
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRTM 151 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRTM 151 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHHH
Confidence 11111 1222 223455554444433 359999999999 556778888877
Q ss_pred HHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcC
Q 003253 658 NEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTD 736 (836)
Q Consensus 658 ~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~ 736 (836)
.-.. ..+.+|..+|....+-+.+++|+ ..+.++.|+.++...++...+.++++. +..-+..+|+.++
T Consensus 152 EkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 152 EKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred HHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 6542 45677888999999999999998 679999999999999999999999877 4445677888877
Q ss_pred CCcHHH
Q 003253 737 GYSGSD 742 (836)
Q Consensus 737 G~sg~D 742 (836)
|--.+.
T Consensus 220 ~nLRrA 225 (351)
T KOG2035|consen 220 RNLRRA 225 (351)
T ss_pred ccHHHH
Confidence 654443
No 232
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.85 E-value=1.3e-07 Score=101.68 Aligned_cols=177 Identities=17% Similarity=0.232 Sum_probs=109.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCCcceeeccccch------h---ccc-------ccHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS------K---WFG-------EGEKYVKAVFSLA 624 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---------~~~~i~v~~s~l~s------~---~~g-------~~e~~i~~lf~~A 624 (836)
.++||+|++|+|||++++.++... .+|++.+.++.--+ . .+| .....-..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998765 25777777643100 0 011 1122334455677
Q ss_pred HhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC--CCCcHHHHhhccccccCC
Q 003253 625 SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP--FDLDEAVIRRLPRRLMVN 702 (836)
Q Consensus 625 ~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~--~~Ld~~l~rRf~~~I~v~ 702 (836)
+..++.+|+|||++.++.... ...+.+++.+ +.+...-.-.++.+||-... -.-|+.+.+|| ..+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~-----~~qr~~Ln~L----K~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF-~~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSY-----RKQREFLNAL----KFLGNELQIPIVGVGTREAYRALRTDPQLASRF-EPFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccH-----HHHHHHHHHH----HHHhhccCCCeEEeccHHHHHHhccCHHHHhcc-CCccCC
Confidence 788899999999999864332 1122333332 33322233456666664332 23568889999 455665
Q ss_pred CCC-HHHHHHHHHHHHhhCCCC--Ccc----cHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 003253 703 LPD-APNRAKILQVILAKEDLS--PDV----DFDAIANMTDGYSGSDLKNLCVTAAHRPIKE 757 (836)
Q Consensus 703 ~P~-~~eR~~Il~~~l~~~~l~--~d~----dl~~LA~~t~G~sg~DL~~L~~~A~~~air~ 757 (836)
... -++...++..+-...++. +.. -...|-.+++|..| ++..++..|+..|++.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhc
Confidence 433 334455666665554443 122 23556677888666 7999999999988874
No 233
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.81 E-value=1.2e-08 Score=117.93 Aligned_cols=176 Identities=19% Similarity=0.272 Sum_probs=107.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh-----cccccHHH-------HHHHHHHHHhcCCceEEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVIFV 634 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~-----~~g~~e~~-------i~~lf~~A~~~~psIL~I 634 (836)
.+++|+|++||||+++|+++.... +.+|+.++|..+... .+|..... ....+. ....++|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEE
Confidence 569999999999999999999876 468999999876322 12211000 011122 224589999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHH
Q 003253 635 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 707 (836)
Q Consensus 635 DEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~ 707 (836)
|||+.| +...+..+.+++++-.....+.....+.++.+|+||+.. ..+.+.+..|+ ..+.+..|+..
T Consensus 240 ~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr 313 (445)
T TIGR02915 240 DEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLR 313 (445)
T ss_pred echhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCch
Confidence 999998 434444443333321111111111122467888888764 45667777888 46778888888
Q ss_pred HHHH----HHHHHHhhC----CCC----CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 003253 708 NRAK----ILQVILAKE----DLS----PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 708 eR~~----Il~~~l~~~----~l~----~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~a 754 (836)
+|.+ +++.++.+. +.. .+..+..|....-..+.++|+++++.|+..+
T Consensus 314 ~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 314 SRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred hchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 8876 444444331 211 2333455555554557788888888887643
No 234
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.80 E-value=2e-08 Score=116.64 Aligned_cols=153 Identities=25% Similarity=0.316 Sum_probs=89.6
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 594 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~---------------- 594 (836)
..|+|+.|+..+++.+.-.+. ...+++|.||||||||++|++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999988776654432 225799999999999999999986441
Q ss_pred ------------CCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 595 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 595 ------------~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
.||....++......+|.....-...+..|. .+||||||++.+ +...++.+.+.++.-..
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 2233222222111112211111112334443 389999999987 33333333333322111
Q ss_pred Hh--cCCcccCcccEEEEeccCCC-----C------------------CCcHHHHhhccccccCCCCCHH
Q 003253 663 NW--DGLRTKDTERILVLAATNRP-----F------------------DLDEAVIRRLPRRLMVNLPDAP 707 (836)
Q Consensus 663 ~l--d~~~~~~~~~vlVIaTTn~~-----~------------------~Ld~~l~rRf~~~I~v~~P~~~ 707 (836)
.+ .+.....+.++.+|+++|.. . .+...++.||+..+.++.++..
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 00 11111223578999999862 1 4778888999988888776654
No 235
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=1.4e-07 Score=103.81 Aligned_cols=169 Identities=11% Similarity=0.115 Sum_probs=107.6
Q ss_pred chHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc--ceeec-------------
Q 003253 538 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF--INISM------------- 602 (836)
Q Consensus 538 G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~--i~v~~------------- 602 (836)
.+....+.|...+.. .+-++.+||+||+|+||+++|+++|..+-+.- -.-.|
T Consensus 6 W~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~ 72 (325)
T PRK06871 6 WLQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGN 72 (325)
T ss_pred chHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 345666666666652 24457899999999999999999999884321 00011
Q ss_pred -cccc--hhccc--ccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcc
Q 003253 603 -SSIT--SKWFG--EGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 673 (836)
Q Consensus 603 -s~l~--s~~~g--~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~ 673 (836)
+++. ....| -.-..++.+...+... ...|++||++|.| + ....+.|+..++. ++.
T Consensus 73 HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m-----~-------~~AaNaLLKtLEE----Pp~ 136 (325)
T PRK06871 73 HPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERL-----T-------EAAANALLKTLEE----PRP 136 (325)
T ss_pred CCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhh-----C-------HHHHHHHHHHhcC----CCC
Confidence 1111 00001 1233455555444433 3469999999998 2 2233445555544 446
Q ss_pred cEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcH
Q 003253 674 RILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 740 (836)
Q Consensus 674 ~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg 740 (836)
++++|.+|+.++.+.|.+++|+ ..+.|++|+.++..+.|..... ........++..+.|-.+
T Consensus 137 ~~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 137 NTYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred CeEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 7888889999999999999999 6889999999988888776431 122234455556665443
No 236
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.76 E-value=2.2e-07 Score=114.39 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 35 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 35 e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
+..|..+.+.+.++...+. ...+.+||+||||| ++++|||+||+.++.++.-++.
T Consensus 326 ~~~k~~i~~~~~~~~~~~~---------~~~~~lll~GppG~--GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 326 KKVKERILEYLAVQKLRGK---------MKGPILCLVGPPGV--GKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred HHHHHHHHHHHHHHHhhcC---------CCCceEEEECCCCC--CHHHHHHHHHHHhcCCeEEEeC
Confidence 5566666665554432221 12346999999999 9999999999999999998875
No 237
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.75 E-value=4e-08 Score=97.92 Aligned_cols=136 Identities=20% Similarity=0.245 Sum_probs=83.5
Q ss_pred chHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce---------------eec
Q 003253 538 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------------ISM 602 (836)
Q Consensus 538 G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~---------------v~~ 602 (836)
|++.+.+.|...+.. .+-++.+||+||+|+||+++|.++|+.+-..-.. -..
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 678888888888763 3445789999999999999999999988321111 001
Q ss_pred cccc--hhc-c--cccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcc
Q 003253 603 SSIT--SKW-F--GEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 673 (836)
Q Consensus 603 s~l~--s~~-~--g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~ 673 (836)
+++. ... . .-.-..++.+...+... ...|++|||+|.| +. ...+.|+..++. ++.
T Consensus 68 ~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----~~-------~a~NaLLK~LEe----pp~ 131 (162)
T PF13177_consen 68 PDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----TE-------EAQNALLKTLEE----PPE 131 (162)
T ss_dssp TTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------H-------HHHHHHHHHHHS----TTT
T ss_pred cceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----hH-------HHHHHHHHHhcC----CCC
Confidence 1110 000 0 01223455555544332 4569999999998 32 233444444444 346
Q ss_pred cEEEEeccCCCCCCcHHHHhhccccccCCC
Q 003253 674 RILVLAATNRPFDLDEAVIRRLPRRLMVNL 703 (836)
Q Consensus 674 ~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~ 703 (836)
++.+|.+|+.++.+-+.+++|+ ..+.|+.
T Consensus 132 ~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 132 NTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 7899999999999999999998 5666654
No 238
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.74 E-value=1.8e-07 Score=111.13 Aligned_cols=190 Identities=15% Similarity=0.213 Sum_probs=111.7
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce-eecc---ccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMS---SIT 606 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~-v~~s---~l~ 606 (836)
.+++|++|+++..+.++.++..... ...+...++|+||||+|||++++.+|++++..++. ++.. ...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~---------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVL---------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhccc---------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 5789999999999998888763111 02233459999999999999999999999877655 2211 000
Q ss_pred hh---------cc---cccHHHHHHHHHHHHh----------cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH-H
Q 003253 607 SK---------WF---GEGEKYVKAVFSLASK----------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-N 663 (836)
Q Consensus 607 s~---------~~---g~~e~~i~~lf~~A~~----------~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~-~ 663 (836)
.. .+ ......+..++..+.. ....|||||||+.++.. .... ++.++. .
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----~~~~----lq~lLr~~ 222 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----DTRA----LHEILRWK 222 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----hHHH----HHHHHHHH
Confidence 00 00 1122334444444442 24579999999987532 1122 233332 1
Q ss_pred hcCCcccCcccEEEEeccCCCC----------C----CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCC----
Q 003253 664 WDGLRTKDTERILVLAATNRPF----------D----LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLS---- 723 (836)
Q Consensus 664 ld~~~~~~~~~vlVIaTTn~~~----------~----Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~---- 723 (836)
... ....+ +|+++|..+. . |.+++++ |. .+|.|++.+..+..+.|+.++..+...
T Consensus 223 ~~e---~~~~p-LI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~ 297 (637)
T TIGR00602 223 YVS---IGRCP-LVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK 297 (637)
T ss_pred hhc---CCCce-EEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 111 11122 3333331121 1 3478876 55 578999999999999999988765321
Q ss_pred ----CcccHHHHHHHcCCCcHHHH
Q 003253 724 ----PDVDFDAIANMTDGYSGSDL 743 (836)
Q Consensus 724 ----~d~dl~~LA~~t~G~sg~DL 743 (836)
....+..|+....|-....|
T Consensus 298 ~~~p~~~~l~~I~~~s~GDiRsAI 321 (637)
T TIGR00602 298 IKVPKKTSVELLCQGCSGDIRSAI 321 (637)
T ss_pred cccCCHHHHHHHHHhCCChHHHHH
Confidence 12356677776666444443
No 239
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.72 E-value=4.3e-07 Score=105.39 Aligned_cols=231 Identities=20% Similarity=0.223 Sum_probs=140.4
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCcceeecccc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 605 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~~s~l 605 (836)
+.+.+.-..++..++...+.. ..-...+.++|-||||||.+++.+-.++ .+.|+.+++-.+
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~---------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISD---------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCC---------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 344555556666655532221 0111369999999999999999998866 467788877554
Q ss_pred ch----------hcccccHH------HHHHHHHH-HHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 606 TS----------KWFGEGEK------YVKAVFSL-ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 606 ~s----------~~~g~~e~------~i~~lf~~-A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
.+ .+.|+... .+..-|.. ..+..++||+|||+|.|+++. |..|..+-..+
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-------------QdVlYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-------------QDVLYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-------------HHHHHHHhcCC
Confidence 32 12222211 12222321 123367899999999997544 22233333334
Q ss_pred ccCcccEEEEeccCCCCCCcH----HHHhhcc-ccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHH--
Q 003253 669 TKDTERILVLAATNRPFDLDE----AVIRRLP-RRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGS-- 741 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~----~l~rRf~-~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~-- 741 (836)
..++.+++||+.+|..+.... .+.+|++ .++.|.+++..+..+|+...|...........+-+|+.....||.
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaR 615 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDAR 615 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHH
Confidence 456689999999887654322 3333554 468999999999999999998766433344455556655545542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 003253 742 DLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 807 (836)
Q Consensus 742 DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~ 807 (836)
....+|++|+..+-.+.. .++ ......|++-|+.+|++.+..+.-..
T Consensus 616 raldic~RA~Eia~~~~~------------~~k-------~~~~q~v~~~~v~~Ai~em~~~~~~~ 662 (767)
T KOG1514|consen 616 RALDICRRAAEIAEERNV------------KGK-------LAVSQLVGILHVMEAINEMLASPYIK 662 (767)
T ss_pred HHHHHHHHHHHHhhhhcc------------ccc-------ccccceeehHHHHHHHHHHhhhhHHH
Confidence 334567777765443321 001 11124589999999999987765433
No 240
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=5.7e-07 Score=100.29 Aligned_cols=237 Identities=23% Similarity=0.297 Sum_probs=145.7
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeeccccch--
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS-- 607 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l~s-- 607 (836)
.+.|.+.-+..+++++..++. ...++++.+.|-||||||.+...+-... ....++++|..+..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 466778888888888876543 2334789999999999999988776554 23457888875311
Q ss_pred --------hc----cccc-HHHHHHHHHH-HHhc-CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCc
Q 003253 608 --------KW----FGEG-EKYVKAVFSL-ASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDT 672 (836)
Q Consensus 608 --------~~----~g~~-e~~i~~lf~~-A~~~-~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~ 672 (836)
.+ .+.. +......|+. ..+. .+-||++||+|.|+.++. .++-+ +.+|..+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~---------~vLy~-lFewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ---------TVLYT-LFEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc---------ceeee-ehhcccC---Cc
Confidence 11 1111 1112222322 2222 367999999999974331 12211 2234444 45
Q ss_pred ccEEEEeccCCCCCCcHHHHh---h---ccccccCCCCCHHHHHHHHHHHHhhCCCCC--cccHHHHHHHcCCCcHHHHH
Q 003253 673 ERILVLAATNRPFDLDEAVIR---R---LPRRLMVNLPDAPNRAKILQVILAKEDLSP--DVDFDAIANMTDGYSGSDLK 744 (836)
Q Consensus 673 ~~vlVIaTTn~~~~Ld~~l~r---R---f~~~I~v~~P~~~eR~~Il~~~l~~~~l~~--d~dl~~LA~~t~G~sg~DL~ 744 (836)
.++++||.+|..+.-|..+-+ | -+..+.|++++.++..+||+..+....... +..++..|+...|-|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987765544433 2 246789999999999999999998776553 3446778888888777 565
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcc
Q 003253 745 NL---CVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVS 805 (836)
Q Consensus 745 ~L---~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~ 805 (836)
.+ |+.|. |+.+.+.+.. .. .+.+.........+|.++++..++..+-.+..
T Consensus 367 kaLdv~R~ai-----EI~E~e~r~~---~~--~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 367 KALDVCRRAI-----EIAEIEKRKI---LD--DPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred HHHHHHHHHH-----HHHHHHHhhc---cc--cCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 44 33333 3333333211 01 11111112223367889999999998755544
No 241
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.71 E-value=1.9e-07 Score=104.68 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=62.1
Q ss_pred CccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 003253 19 GTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 98 (836)
Q Consensus 19 ~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~ 98 (836)
|++|.-.++++ .+--++.|..|.-|+|-|.+...+..-.+. ...+++|||.||||+ ++.+|||+||+.++++++-+
T Consensus 3 P~~I~~~Ld~~-IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~-e~~p~~ILLiGppG~--GKT~lAraLA~~l~~~fi~v 78 (441)
T TIGR00390 3 PREIVAELDKY-IIGQDNAKKSVAIALRNRYRRSQLNEELKD-EVTPKNILMIGPTGV--GKTEIARRLAKLANAPFIKV 78 (441)
T ss_pred HHHHHHHHhhh-ccCHHHHHHHHHHHHHhhhhhhcccccccc-ccCCceEEEECCCCC--CHHHHHHHHHHHhCCeEEEe
Confidence 44444444443 333589999999999999777655322221 224589999999999 99999999999999999999
Q ss_pred eccccC
Q 003253 99 DSHSLL 104 (836)
Q Consensus 99 d~~~~~ 104 (836)
|++.+.
T Consensus 79 dat~~~ 84 (441)
T TIGR00390 79 EATKFT 84 (441)
T ss_pred ecceee
Confidence 998885
No 242
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.69 E-value=8.1e-08 Score=111.75 Aligned_cols=201 Identities=19% Similarity=0.252 Sum_probs=117.0
Q ss_pred chhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh-
Q 003253 533 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK- 608 (836)
Q Consensus 533 ~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~- 608 (836)
+.+++|.....+.+.+.+.. .......+||+|++|||||++|++++... +.||+.++|+.+...
T Consensus 137 ~~~lig~s~~~~~l~~~~~~------------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR------------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH------------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 34566666555555554431 01223569999999999999999999887 579999999876322
Q ss_pred ----cccccHHH-------HHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEE
Q 003253 609 ----WFGEGEKY-------VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 677 (836)
Q Consensus 609 ----~~g~~e~~-------i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlV 677 (836)
.+|...+. ....|+. ...+.||||||+.| +...+..+.+++++--....+.......++.+
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLDEIGDM-----PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEeccccC-----CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 22221110 0111222 23579999999988 33333333332221100000111111245788
Q ss_pred EeccCCC-------CCCcHHHHhhccccccCCCCCHHHHHH----HHHHHHhhC----CCC----CcccHHHHHHHcCCC
Q 003253 678 LAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK----ILQVILAKE----DLS----PDVDFDAIANMTDGY 738 (836)
Q Consensus 678 IaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~~----Il~~~l~~~----~l~----~d~dl~~LA~~t~G~ 738 (836)
|+||+.. ..+.+.+..|| ..+.+..|...+|.+ +++.++.+. +.. .+..+..|....-..
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 355 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC
Confidence 8888753 35677888888 456777777666654 555555432 111 233455566655566
Q ss_pred cHHHHHHHHHHHHHHH
Q 003253 739 SGSDLKNLCVTAAHRP 754 (836)
Q Consensus 739 sg~DL~~L~~~A~~~a 754 (836)
+.++|+++++.|+..+
T Consensus 356 Nv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 356 NVRQLENTCRWLTVMA 371 (469)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 7788999988887653
No 243
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=2.3e-07 Score=102.91 Aligned_cols=154 Identities=16% Similarity=0.123 Sum_probs=99.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCC--cceeec--------------cccchhcc-c----ccHHHHHHHHHHHH
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGAN--FINISM--------------SSITSKWF-G----EGEKYVKAVFSLAS 625 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~--~i~v~~--------------s~l~s~~~-g----~~e~~i~~lf~~A~ 625 (836)
+.++.+||+||+|+||+++|.++|..+-+. --.-.| +++.--.. + -.-..++.+...+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 455789999999999999999999988331 000011 12110000 0 11224555554443
Q ss_pred ----hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccC
Q 003253 626 ----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMV 701 (836)
Q Consensus 626 ----~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v 701 (836)
.....|++||++|.| + ....|.|+..++. ++.++++|.+|+.++.|.|.+++|+ ..+.|
T Consensus 102 ~~~~~g~~kV~iI~~ae~m-----~-------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALL-----T-------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RLHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhh-----C-------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-ccccC
Confidence 334569999999999 2 2233455555544 4567889999999999999999999 57899
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHH
Q 003253 702 NLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGS 741 (836)
Q Consensus 702 ~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~ 741 (836)
++|+.++..+.+... .+.+ ......++..+.|-.+.
T Consensus 165 ~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 165 APPPEQYALTWLSRE---VTMS-QDALLAALRLSAGAPGA 200 (334)
T ss_pred CCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCCCHHH
Confidence 999988887777532 1222 23345566677765443
No 244
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=3.6e-07 Score=100.53 Aligned_cols=170 Identities=19% Similarity=0.221 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc-c------------eeecccc
Q 003253 539 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I------------NISMSSI 605 (836)
Q Consensus 539 ~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~-i------------~v~~s~l 605 (836)
+..+.+.|...+.. .+-++.+||+||+|+||+++|.++|..+-+.- . .-+.+++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 45666667666642 23447899999999999999999998873321 0 0001111
Q ss_pred ch-----hccc------ccHHHHHHHHHHHHhcC----CceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCccc
Q 003253 606 TS-----KWFG------EGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 670 (836)
Q Consensus 606 ~s-----~~~g------~~e~~i~~lf~~A~~~~----psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~ 670 (836)
.- ...| -.-..++.+.+.+...+ ..|++||++|.| + ....|.|+..++.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m-----~-------~~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI-----N-------RAACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh-----C-------HHHHHHHHHHhhC----
Confidence 10 0001 01234555555554433 369999999999 2 2233444444443
Q ss_pred CcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHH
Q 003253 671 DTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDL 743 (836)
Q Consensus 671 ~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL 743 (836)
++.++++|.+|+.++.+-|.+++|+ ..+.|+.|+.++..+.+.. .+.+ ..+...++..+.|-.+..+
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~----~~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLA----QGVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHH----cCCC-hHHHHHHHHHcCCCHHHHH
Confidence 3456788888999999999999999 6889999999877777653 2332 2334466777777555443
No 245
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.64 E-value=5.1e-08 Score=117.90 Aligned_cols=187 Identities=19% Similarity=0.202 Sum_probs=107.3
Q ss_pred HHHHHHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhh---cC----CCCCCCceEEEEcCCCChHHHHH
Q 003253 514 EFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTMLA 586 (836)
Q Consensus 514 d~~~~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~---~~----~~~~p~~~vLL~GPpGtGKT~LA 586 (836)
++...+...+.| .|.|++.+|+.+.-.+........... .+ ...+...+|||.|+||||||.+|
T Consensus 439 ~i~~~L~~SiaP---------~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLA 509 (915)
T PTZ00111 439 MIYRILLDSFAP---------SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLL 509 (915)
T ss_pred HHHHHHHHHhCC---------eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHH
Confidence 344445555554 478999999888666554332111000 00 11123358999999999999999
Q ss_pred HHHHHHhC-------CCcceeeccccchhcccc--cHHHH-HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHH
Q 003253 587 KAVATEAG-------ANFINISMSSITSKWFGE--GEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKM 656 (836)
Q Consensus 587 ~alA~~l~-------~~~i~v~~s~l~s~~~g~--~e~~i-~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~i 656 (836)
+++++... .++..+.+..... ..+. .+..+ ...+..| ..++++|||++.+ +...+..+.++
T Consensus 510 r~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLvlA---dgGtL~IDEidkm-----s~~~Q~aLlEa 580 (915)
T PTZ00111 510 HYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVVLA---NGGVCCIDELDKC-----HNESRLSLYEV 580 (915)
T ss_pred HHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEEEc---CCCeEEecchhhC-----CHHHHHHHHHH
Confidence 99998652 3444444433211 0000 00000 0112222 2379999999988 33333333333
Q ss_pred HHHHHHHh--cCCcccCcccEEEEeccCCCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHh
Q 003253 657 KNEFMVNW--DGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILA 718 (836)
Q Consensus 657 l~~ll~~l--d~~~~~~~~~vlVIaTTn~~~-------------~Ld~~l~rRf~~~I~v-~~P~~~eR~~Il~~~l~ 718 (836)
+++-...+ .|+...-+.++.||||+|... .|++.+++|||.++.+ +.|+.+.-..|..+++.
T Consensus 581 MEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 581 MEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred HhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 32211111 133333457899999999842 4789999999876544 77887777777766654
No 246
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.62 E-value=2e-07 Score=100.34 Aligned_cols=203 Identities=22% Similarity=0.275 Sum_probs=123.4
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 606 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~ 606 (836)
...|+.+++.....+.+.+.... + ..-...+||.|.+||||-.+|++....+ ..||+.++|+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k-------~-----AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK-------L-----AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH-------h-----hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 35677777776665555443321 1 1112359999999999999999998776 6899999998762
Q ss_pred -----hhcccccH--HHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEe
Q 003253 607 -----SKWFGEGE--KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 679 (836)
Q Consensus 607 -----s~~~g~~e--~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIa 679 (836)
+..+|..+ .--..+|+.|.. +.+|+|||..| ++..+..+.+.++.-.-.--|-...-..+|.||+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 33444443 234568888877 89999999988 4444444333333211000111111235689999
Q ss_pred ccCCC-------CCCcHHHHhhccccccCCCCCHHHHHH--------HHHHHHhhCCCC-CcccH---HHHHHHcCCCcH
Q 003253 680 ATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRAK--------ILQVILAKEDLS-PDVDF---DAIANMTDGYSG 740 (836)
Q Consensus 680 TTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~~--------Il~~~l~~~~l~-~d~dl---~~LA~~t~G~sg 740 (836)
||..+ ..+.+.+.-|+ .++.+..|...+|.. +++++..+.++. +..+. ..|.+.--.-+.
T Consensus 340 atq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNV 418 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNV 418 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccH
Confidence 99763 34556677788 678888888877754 334444444443 33333 333333333455
Q ss_pred HHHHHHHHHHHHH
Q 003253 741 SDLKNLCVTAAHR 753 (836)
Q Consensus 741 ~DL~~L~~~A~~~ 753 (836)
++|.+.+-+|...
T Consensus 419 RqL~N~iyRA~s~ 431 (511)
T COG3283 419 RQLKNAIYRALTL 431 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666543
No 247
>PRK12377 putative replication protein; Provisional
Probab=98.61 E-value=2.5e-07 Score=98.27 Aligned_cols=111 Identities=20% Similarity=0.284 Sum_probs=66.9
Q ss_pred HHHHhcCcCCCCCCcccchhhhc----hHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 003253 516 EKRLLADVIPPSDIGVTFDDIGA----LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 591 (836)
Q Consensus 516 ~~~l~~~ii~~~~~~~~~~di~G----~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~ 591 (836)
++.+....+++.....+|++... ...+....+.++.. |. ....+++|+||||||||+||.|||+
T Consensus 56 ~~~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~-----~~~~~l~l~G~~GtGKThLa~AIa~ 123 (248)
T PRK12377 56 EKILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LM-----TGCTNFVFSGKPGTGKNHLAAAIGN 123 (248)
T ss_pred HHHHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HH-----hcCCeEEEECCCCCCHHHHHHHHHH
Confidence 33334445666666778888643 23344444444331 11 1125899999999999999999999
Q ss_pred Hh---CCCcceeeccccchhccccc--HHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 592 EA---GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 592 ~l---~~~~i~v~~s~l~s~~~g~~--e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
.+ +..++.++..++........ ......++... ....+|+|||++..
T Consensus 124 ~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 124 RLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 88 67777777777655321110 00111222222 34689999999754
No 248
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.61 E-value=3.2e-07 Score=101.46 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=46.3
Q ss_pred ch-hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------Ccceeec
Q 003253 533 FD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 602 (836)
Q Consensus 533 ~~-di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~-------~~i~v~~ 602 (836)
|+ ++.|+++.+.++.+.+.... . +.....+.++|+||||+|||+||++||+.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a-------~-g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA-------Q-GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH-------h-cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 45 79999999998888775322 1 11223356899999999999999999999954 6666543
No 249
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.59 E-value=7.1e-07 Score=100.17 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccccCC
Q 003253 35 ENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLG 105 (836)
Q Consensus 35 e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~~~~ 105 (836)
++.|..|..|++-|.+...+..-.+ -.-.+++|||.||+|+ ++.+|||+||+.++++++.+|++.|..
T Consensus 21 e~AkkalavAl~~~~~r~~l~~~~~-~e~~~~~ILliGp~G~--GKT~LAr~LAk~l~~~fi~vD~t~f~e 88 (443)
T PRK05201 21 DDAKRAVAIALRNRWRRMQLPEELR-DEVTPKNILMIGPTGV--GKTEIARRLAKLANAPFIKVEATKFTE 88 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccc-cccCCceEEEECCCCC--CHHHHHHHHHHHhCChheeecchhhcc
Confidence 8899999999999987765532111 1123588999999999 999999999999999999999988864
No 250
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=9.3e-07 Score=97.19 Aligned_cols=148 Identities=16% Similarity=0.150 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcc-eeec--------------
Q 003253 538 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-NISM-------------- 602 (836)
Q Consensus 538 G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i-~v~~-------------- 602 (836)
.+....+.|...+.. .+.++.+||+||.|+||+.+|+++|..+-+.-. .-.|
T Consensus 7 Wl~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~H 73 (319)
T PRK06090 7 WLVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNH 73 (319)
T ss_pred cHHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCC
Confidence 456666777766642 344578999999999999999999998832110 0011
Q ss_pred cccchhcc---cc--cHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcc
Q 003253 603 SSITSKWF---GE--GEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTE 673 (836)
Q Consensus 603 s~l~s~~~---g~--~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~ 673 (836)
+++.--.. |. .-..++.+...+... ...|++||++|.| + ....|.|+..++. ++.
T Consensus 74 PD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----~-------~~AaNaLLKtLEE----Pp~ 137 (319)
T PRK06090 74 PDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM-----N-------ESASNALLKTLEE----PAP 137 (319)
T ss_pred CCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhh-----C-------HHHHHHHHHHhcC----CCC
Confidence 12210000 11 123455554444332 3479999999998 2 2233455555544 446
Q ss_pred cEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHH
Q 003253 674 RILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV 715 (836)
Q Consensus 674 ~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~ 715 (836)
++++|.+|+.++.+-|.+++|+ ..+.|+.|+.++..+.+..
T Consensus 138 ~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 7888999999999999999999 6889999998888777654
No 251
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.58 E-value=4.1e-07 Score=105.43 Aligned_cols=176 Identities=20% Similarity=0.273 Sum_probs=103.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh-----cccccHHH-------HHHHHHHHHhcCCceEEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY-------VKAVFSLASKIAPSVIFV 634 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~-----~~g~~e~~-------i~~lf~~A~~~~psIL~I 634 (836)
..+|++|++||||+++|+++.... +.+|+.++|..+... .+|..... ....|..| ..++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEE
Confidence 579999999999999999998876 579999999876322 22211100 01122222 3479999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHH
Q 003253 635 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 707 (836)
Q Consensus 635 DEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~ 707 (836)
|||+.| +...+..+.+++++-.....+.......++.||+||+.. ..+.+.+..|+ ..+.+..|+..
T Consensus 244 d~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEM-----PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLR 317 (457)
T ss_pred echhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 333333322222211000001111112457889988864 34666777777 45778888888
Q ss_pred HHHH----HHHHHHhhC----CCC----CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 003253 708 NRAK----ILQVILAKE----DLS----PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 708 eR~~----Il~~~l~~~----~l~----~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~a 754 (836)
+|.+ ++..++.+. +.. .+..+..|....-..+.++|+++++.|+..+
T Consensus 318 eR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 318 DRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred hchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 7765 444444332 111 2223445555544557788888888887643
No 252
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=5.8e-07 Score=99.70 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=90.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCCcc---eeec--------------cccc--h-hc-----------------
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI---NISM--------------SSIT--S-KW----------------- 609 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i---~v~~--------------s~l~--s-~~----------------- 609 (836)
+.++++||+||+|+||+++|+++|..+.+.-- .-.| +++. . ..
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 44579999999999999999999998854321 1111 1110 0 00
Q ss_pred --cc---------ccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCccc
Q 003253 610 --FG---------EGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTER 674 (836)
Q Consensus 610 --~g---------~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~ 674 (836)
.| -.-..++.+...+... ...|++||++|.| + ....+.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----~-------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----N-------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----C-------HHHHHHHHHHhcC----CCcC
Confidence 00 0112345554444322 3469999999998 2 2334555555553 4567
Q ss_pred EEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHH
Q 003253 675 ILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVI 716 (836)
Q Consensus 675 vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~ 716 (836)
+++|.+|+.++.|.|.+++|+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 889999999999999999999 78999999999888888653
No 253
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.56 E-value=4.5e-07 Score=105.12 Aligned_cols=152 Identities=25% Similarity=0.311 Sum_probs=86.9
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc--ceeecccc----
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF--INISMSSI---- 605 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~--i~v~~s~l---- 605 (836)
.|.++.|...+++.+.-.+ ....+++|+||||+|||++++.++..+.-.- ..+....+
T Consensus 189 d~~~v~Gq~~~~~al~laa----------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA----------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred CeEEEECcHHHHhhhheec----------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 6777888777666543211 1236899999999999999999987652100 00111110
Q ss_pred ----------------------chhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHH
Q 003253 606 ----------------------TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 663 (836)
Q Consensus 606 ----------------------~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ 663 (836)
....+|.....-...+..|.. ++|||||++.+ +...+..+.+.+++-...
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v~ 324 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQIH 324 (506)
T ss_pred ccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcEE
Confidence 001122111111234454444 89999999977 322333333332221111
Q ss_pred hc--CCcccCcccEEEEeccCCCC---------------------CCcHHHHhhccccccCCCCCHH
Q 003253 664 WD--GLRTKDTERILVLAATNRPF---------------------DLDEAVIRRLPRRLMVNLPDAP 707 (836)
Q Consensus 664 ld--~~~~~~~~~vlVIaTTn~~~---------------------~Ld~~l~rRf~~~I~v~~P~~~ 707 (836)
+. +.....+.++.+|+|+|... .+...++.||+..+.++.|+.+
T Consensus 325 I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 325 LSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred EecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 11 11112246799999999742 4777999999999999888654
No 254
>PRK08116 hypothetical protein; Validated
Probab=98.56 E-value=3.8e-07 Score=98.33 Aligned_cols=68 Identities=25% Similarity=0.477 Sum_probs=47.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhccc----ccHHHHHHHHHHHHhcCCceEEEccchh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG----EGEKYVKAVFSLASKIAPSVIFVDEVDS 639 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g----~~e~~i~~lf~~A~~~~psIL~IDEID~ 639 (836)
.+++|+|++|||||+||.++|+++ +.+++.++.+++...+.. ........++.... ...+|+|||+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~ 189 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA 189 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence 579999999999999999999987 788888888776544321 11111222333222 346999999964
No 255
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.56 E-value=2.9e-07 Score=98.33 Aligned_cols=158 Identities=19% Similarity=0.237 Sum_probs=107.0
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC------cceeecc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 603 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~------~i~v~~s 603 (836)
...+.|+++++++...+.+.... .+- .++|+|||||+|||+...+.|..+-.+ +..++.+
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PGL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CCC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 35678899999988888876431 111 399999999999999999999998553 1122222
Q ss_pred ccchhcccccHHHHHHHHHHHHh-------cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEE
Q 003253 604 SITSKWFGEGEKYVKAVFSLASK-------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 676 (836)
Q Consensus 604 ~l~s~~~g~~e~~i~~lf~~A~~-------~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vl 676 (836)
+=.+ .+ ....--..|..++. ..+..+++||.|.+ ....+.+++++...+ ..++.
T Consensus 103 d~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-----T~~AQnALRRviek~-----------t~n~r 163 (360)
T KOG0990|consen 103 DDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-----TRDAQNALRRVIEKY-----------TANTR 163 (360)
T ss_pred CccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHh-----hHHHHHHHHHHHHHh-----------ccceE
Confidence 2110 11 11112234444442 26689999999998 445666777655544 24556
Q ss_pred EEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCC
Q 003253 677 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED 721 (836)
Q Consensus 677 VIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~ 721 (836)
++..+|.+..+.+++++|| ..+.|.+.+..+....+.+++....
T Consensus 164 F~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred EEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcch
Confidence 6667999999999999999 5678887787777777777776544
No 256
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.54 E-value=6.6e-07 Score=94.90 Aligned_cols=108 Identities=23% Similarity=0.337 Sum_probs=66.9
Q ss_pred HhcCcCCCCCCcccchhhhch-H---HHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-
Q 003253 519 LLADVIPPSDIGVTFDDIGAL-E---NVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA- 593 (836)
Q Consensus 519 l~~~ii~~~~~~~~~~di~G~-~---~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l- 593 (836)
+....+++.....+|+++... + .+...+.+++.. + .....+++|+|+||||||+||.++|+++
T Consensus 57 ~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~-----~~~~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 57 FNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------F-----DGNIASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred HHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------h-----ccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 334445665567788886432 2 233334433321 1 1112489999999999999999999988
Q ss_pred --CCCcceeeccccchhcccc---cHHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 594 --GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 594 --~~~~i~v~~s~l~s~~~g~---~e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
+..++.++.+++....... .......++.... ...+|+|||++..
T Consensus 125 ~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 125 LRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred hcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 6778888887776533221 1111223333332 4689999999865
No 257
>PRK15115 response regulator GlrR; Provisional
Probab=98.50 E-value=9e-07 Score=102.27 Aligned_cols=175 Identities=19% Similarity=0.276 Sum_probs=103.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhc-----ccccHHH-------HHHHHHHHHhcCCceEEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVIFV 634 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~-----~g~~e~~-------i~~lf~~A~~~~psIL~I 634 (836)
..++|+|++|||||++|+++.... +.+|+.++|..+.... +|...+. ...+|. ....++|||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 234 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFL 234 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEE
Confidence 469999999999999999999886 5799999998763321 1111000 001122 223479999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHH
Q 003253 635 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 707 (836)
Q Consensus 635 DEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~ 707 (836)
||||.| +...+..+.+++++-....-+.......++.+|+||+.. ..+.+.+..|+ ..+.+..|...
T Consensus 235 ~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr 308 (444)
T PRK15115 235 DEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALA 308 (444)
T ss_pred EccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChH
Confidence 999998 433333333332221100011111122467888888753 23455566666 45777888888
Q ss_pred HHHH----HHHHHHhhC----CC----CCcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 708 NRAK----ILQVILAKE----DL----SPDVDFDAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 708 eR~~----Il~~~l~~~----~l----~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
+|.+ +++.++.+. +. -.+..+..|....-..+.++|+++++.|+..
T Consensus 309 ~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 309 ERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred hccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 8854 445555432 11 1233455566655456778888888887754
No 258
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.50 E-value=7.4e-07 Score=106.15 Aligned_cols=48 Identities=31% Similarity=0.508 Sum_probs=41.4
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
..|++++|+++++..|...+.. . ++++|+||||||||++|++++..+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~--------------~--~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ--------------R--RHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh--------------C--CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 6799999999999998887752 1 3799999999999999999998774
No 259
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.50 E-value=2e-06 Score=90.53 Aligned_cols=94 Identities=21% Similarity=0.318 Sum_probs=61.1
Q ss_pred CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC-------------CCCCcHHHHhh
Q 003253 628 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-------------PFDLDEAVIRR 694 (836)
Q Consensus 628 ~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~-------------~~~Ld~~l~rR 694 (836)
-|+||||||++.| +-. .+.-+-..+.. +-.+ +||.+||+ |+.+++.++.|
T Consensus 296 vPGVLFIDEVhML-----DiE-------cFTyL~kalES----~iaP-ivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----DIE-------CFTYLHKALES----PIAP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----hhH-------HHHHHHHHhcC----CCCc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 5789999999977 211 11112122222 1133 44555655 67789999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCc
Q 003253 695 LPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYS 739 (836)
Q Consensus 695 f~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~s 739 (836)
+ .+|..-+.+.++.++|++...+.+++. .+..+..|+.....-+
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ts 403 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTS 403 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchh
Confidence 9 677778889999999999988887776 4445666666544333
No 260
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.49 E-value=2.6e-06 Score=94.59 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=45.6
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 98 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~ 98 (836)
+|++|-+- ++.+..|....-..... ....+.+||+||||| +++.||+++|+++++++...
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG~--GKT~la~~ia~~l~~~~~~~ 82 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPGL--GKTTLANIIANEMGVNIRIT 82 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCCc--cHHHHHHHHHHHhCCCeEEE
Confidence 78998888 88888777665332221 134567999999999 99999999999998765543
No 261
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.48 E-value=3.7e-07 Score=106.00 Aligned_cols=179 Identities=21% Similarity=0.293 Sum_probs=100.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh-----cccccHHH----HHHHHHHHHhcCCceEEEccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-----WFGEGEKY----VKAVFSLASKIAPSVIFVDEV 637 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~-----~~g~~e~~----i~~lf~~A~~~~psIL~IDEI 637 (836)
..+++.|.+||||+++|+++.... +.+|+.++|..+... .+|..... .............++||||||
T Consensus 158 ~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei 237 (463)
T TIGR01818 158 ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEI 237 (463)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEch
Confidence 479999999999999999999876 579999999876332 22211100 000000011223589999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHHHH-
Q 003253 638 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR- 709 (836)
Q Consensus 638 D~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR- 709 (836)
+.| +...+..+.+++++-....-+.......++.||+||+.. ..+.+.+..|+. .+.+.+|+..+|
T Consensus 238 ~~l-----~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLr~R~ 311 (463)
T TIGR01818 238 GDM-----PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLN-VIRIHLPPLRERR 311 (463)
T ss_pred hhC-----CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhC-cceecCCCcccch
Confidence 988 333333222222211000001111112356788888753 346677888873 456666665544
Q ss_pred ---HHHHHHHHhhC----CCC----CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 003253 710 ---AKILQVILAKE----DLS----PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 710 ---~~Il~~~l~~~----~l~----~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~a 754 (836)
..+++.++... +.. .+..+..|....-.-+.++|++++..|+..+
T Consensus 312 ~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 312 EDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 44555555432 111 2233444444443445688888888887654
No 262
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.1e-07 Score=106.77 Aligned_cols=48 Identities=38% Similarity=0.538 Sum_probs=40.5
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..+|.|+.|++..|+.+.-.... + +++|++||||||||++|+.+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG-----------g-----HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG-----------G-----HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc-----------C-----CcEEEecCCCCchHHhhhhhcccC
Confidence 35899999999999999876652 2 689999999999999999886544
No 263
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.46 E-value=3.3e-06 Score=89.18 Aligned_cols=133 Identities=20% Similarity=0.275 Sum_probs=90.8
Q ss_pred CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC------------CCCCcHHHHhhc
Q 003253 628 APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR------------PFDLDEAVIRRL 695 (836)
Q Consensus 628 ~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~------------~~~Ld~~l~rRf 695 (836)
-|+||||||++.| +-.-..++++.+.. +-.+++++ +||+ |+.++-.++.|.
T Consensus 288 vpGVLFIDEvHML-----DIEcFsFlNrAlE~-----------d~~Piiim-aTNrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----DIECFSFLNRALEN-----------DMAPIIIM-ATNRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred ccceEEEeeehhh-----hhHHHHHHHHHhhh-----------ccCcEEEE-EcCCceEEeecCCCCCCCCCcHHHhhhh
Confidence 4779999999877 33333444444332 22445544 4444 677899999998
Q ss_pred cccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003253 696 PRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGK 774 (836)
Q Consensus 696 ~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~ 774 (836)
.+|.-.+++.++..+||+..+..+.+. .+..++.|.......+-+--.+|+..|...+.++
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr----------------- 412 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR----------------- 412 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-----------------
Confidence 678888899999999999999887765 3344555666555556666667777777776665
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHhccCc
Q 003253 775 PAPALSGCADIRPLNMDDFKYAHERVCASV 804 (836)
Q Consensus 775 ~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~ 804 (836)
....+..+|++.+.+-+.-..
T Consensus 413 ---------k~~~v~~~di~r~y~LFlD~~ 433 (454)
T KOG2680|consen 413 ---------KGKVVEVDDIERVYRLFLDEK 433 (454)
T ss_pred ---------cCceeehhHHHHHHHHHhhhh
Confidence 224678889999888764443
No 264
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.44 E-value=1.8e-06 Score=102.26 Aligned_cols=132 Identities=14% Similarity=0.160 Sum_probs=89.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CCcceeeccccchhccccc--HHHH--------HHHHHHHHhcCCceEEEcc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVIFVDE 636 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~--~~~i~v~~s~l~s~~~g~~--e~~i--------~~lf~~A~~~~psIL~IDE 636 (836)
..||||.|++|+||++++++++..+. .||+.+..+.-....+|.. +..+ ..++..|. .+||||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe 101 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAM 101 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecC
Confidence 46899999999999999999999984 5888877655444455543 1111 12223332 37999999
Q ss_pred chhhhcCCCCCchHHHHHHHHHHHHHHh--cCCcccCcccEEEEeccCCC---CCCcHHHHhhccccccCCCCCHHH
Q 003253 637 VDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLPDAPN 708 (836)
Q Consensus 637 ID~L~~~r~~~~~~~~~~~il~~ll~~l--d~~~~~~~~~vlVIaTTn~~---~~Ld~~l~rRf~~~I~v~~P~~~e 708 (836)
+..+ .+.....+...+.+-.+.+ ++....-+.++++|+|-|.. ..|.+.++.||+..+.++.|+..+
T Consensus 102 ~n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 102 AERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred cccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 9977 4444444444444433333 45555555789999985432 348999999999999998877654
No 265
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.41 E-value=1.8e-06 Score=98.27 Aligned_cols=85 Identities=27% Similarity=0.414 Sum_probs=67.0
Q ss_pred cCCCcccccccccc-ccccchhHHHHHHHHHHhccCCccccccc-ccccCCCCceeeecCCCchHHHHHHHHHHHhHhCC
Q 003253 16 ILDGTNLQESFENF-PYYLSENTKNVLIAASYIHLKHKDHAKYT-SELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 93 (836)
Q Consensus 16 v~~~~~~~~~~~~f-py~l~e~tk~~l~~~~~~~l~~~~~~~~~-~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~ 93 (836)
+.+|++|.-.++++ -+- |+.|..|..|+|-|.+.-...... .+.....+.|||.||+|| ++++|||+||+.+++
T Consensus 59 ~~~p~~i~~~L~~~ViGq--~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~Gt--GKT~lAr~lA~~l~~ 134 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQ--ERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGS--GKTLLAQTLARILDV 134 (412)
T ss_pred CCCHHHHHHHHhhHeeCh--HHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCC--CHHHHHHHHHHHhCC
Confidence 67888888888873 344 899999999999887774332111 134445688999999999 999999999999999
Q ss_pred eEEEEeccccC
Q 003253 94 KLLIFDSHSLL 104 (836)
Q Consensus 94 ~ll~~d~~~~~ 104 (836)
+|..+|.+.+.
T Consensus 135 pf~~id~~~l~ 145 (412)
T PRK05342 135 PFAIADATTLT 145 (412)
T ss_pred Cceecchhhcc
Confidence 99999976554
No 266
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.41 E-value=3e-07 Score=89.06 Aligned_cols=106 Identities=23% Similarity=0.458 Sum_probs=64.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRREN 646 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~---~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~ 646 (836)
..|||+|++||||+++|++|+...+ .+|+.++|..+. ..+++.+ ..++|||+|||.| +
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L-----~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL-----S 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-----C
Confidence 4699999999999999999998874 467777776533 2344443 6689999999998 3
Q ss_pred CchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-C------CCcHHHHhhccccccCCCCC
Q 003253 647 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-F------DLDEAVIRRLPRRLMVNLPD 705 (836)
Q Consensus 647 ~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-~------~Ld~~l~rRf~~~I~v~~P~ 705 (836)
...+.. ++..+.... ..++.+|+++..+ . .+++.+..||. .+.+..|+
T Consensus 83 ~~~Q~~-------L~~~l~~~~---~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lPp 137 (138)
T PF14532_consen 83 PEAQRR-------LLDLLKRQE---RSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLPP 137 (138)
T ss_dssp HHHHHH-------HHHHHHHCT---TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE--
T ss_pred HHHHHH-------HHHHHHhcC---CCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCCC
Confidence 222222 222222211 2345666665542 2 36677777874 34444443
No 267
>PRK08181 transposase; Validated
Probab=98.41 E-value=8e-07 Score=95.62 Aligned_cols=69 Identities=23% Similarity=0.400 Sum_probs=49.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccc-cHHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~-~e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
.+++|+||||||||+||.++|+++ |..++.+++.+++..+... ........+.... .+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccc
Confidence 579999999999999999999866 7788888887776543211 1111223333322 4679999999876
No 268
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=1.3e-06 Score=96.62 Aligned_cols=131 Identities=18% Similarity=0.203 Sum_probs=86.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCC-------------------------cceeeccccchhccc-----ccHHH
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------------------FINISMSSITSKWFG-----EGEKY 616 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------------------~i~v~~s~l~s~~~g-----~~e~~ 616 (836)
+-++.+||+||+|+|||++|+++|+.+.+. |+.+.+..-. .-.| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 445789999999999999999999987431 1122211000 0001 12334
Q ss_pred HHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHH
Q 003253 617 VKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVI 692 (836)
Q Consensus 617 i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~ 692 (836)
++.+.+.+... ...|++||+++.| +.. ..+.++..++... ..+.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----d~~-------a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----NLQ-------AANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----CHH-------HHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHH
Confidence 66666666543 3469999999988 322 2233444444332 23556668888889999999
Q ss_pred hhccccccCCCCCHHHHHHHHHH
Q 003253 693 RRLPRRLMVNLPDAPNRAKILQV 715 (836)
Q Consensus 693 rRf~~~I~v~~P~~~eR~~Il~~ 715 (836)
+|+ ..+.|++|+.++..+.+..
T Consensus 162 SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 SRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHh-hhhcCCCCCHHHHHHHHHh
Confidence 999 7899999999888777754
No 269
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.39 E-value=1.2e-06 Score=91.05 Aligned_cols=162 Identities=18% Similarity=0.280 Sum_probs=85.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC---Ccceeec-ccc---------------------chh-------------cc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGA---NFINISM-SSI---------------------TSK-------------WF 610 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~---~~i~v~~-s~l---------------------~s~-------------~~ 610 (836)
...++|+||.|+|||+|++.+...+.- ..+.+.. ... ... ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 368999999999999999999998821 2222211 100 000 00
Q ss_pred cccHHHHHHHHHHHHhcC-CceEEEccchhhh-cCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC---
Q 003253 611 GEGEKYVKAVFSLASKIA-PSVIFVDEVDSML-GRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF--- 685 (836)
Q Consensus 611 g~~e~~i~~lf~~A~~~~-psIL~IDEID~L~-~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~--- 685 (836)
......+..++....+.. ..||+|||++.+. +.... ..++..+...++..... .++.+|.+++...
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED-------KDFLKSLRSLLDSLLSQ--QNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT-------HHHHHHHHHHHHH------TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch-------HHHHHHHHHHHhhcccc--CCceEEEECCchHHHH
Confidence 112344566666665543 4899999999996 22211 22333444444442222 2333333333211
Q ss_pred ---CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCC-C-CCcccHHHHHHHcCCCcH
Q 003253 686 ---DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKED-L-SPDVDFDAIANMTDGYSG 740 (836)
Q Consensus 686 ---~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~-l-~~d~dl~~LA~~t~G~sg 740 (836)
.-...+..|+.. +.+++.+.++..++++..+.... + .++.+++.+...+.|..+
T Consensus 171 ~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 171 EFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp HTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HH
T ss_pred HhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHH
Confidence 112234457755 89999999999999999876651 1 256778888888888544
No 270
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.37 E-value=5.9e-06 Score=96.56 Aligned_cols=194 Identities=19% Similarity=0.296 Sum_probs=110.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc-----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI----- 605 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l----- 605 (836)
.+.+|+..+.+-.++++.++...+. + ..+.+-+||+||||||||++++.||+++|+.+++...+..
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~-------~--~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~ 86 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFS-------G--SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESD 86 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhc-------c--CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccc
Confidence 4677888777666677766653111 1 2233568999999999999999999999988776432211
Q ss_pred --chhccccc---H---HH---HHHH-HHHHHh-----------cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 606 --TSKWFGEG---E---KY---VKAV-FSLASK-----------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 606 --~s~~~g~~---e---~~---i~~l-f~~A~~-----------~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
...+.+.. . .. ...+ +..++. ..+.||+|+|+-.++... ....+.++..++.
T Consensus 87 ~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-----~~~f~~~L~~~l~ 161 (519)
T PF03215_consen 87 NQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-----TSRFREALRQYLR 161 (519)
T ss_pred cccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh-----HHHHHHHHHHHHH
Confidence 00111110 0 00 1111 111111 245799999998664221 1333444444432
Q ss_pred HhcCCcccCcc-cEEEEec-c------CCC--------CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhC----
Q 003253 663 NWDGLRTKDTE-RILVLAA-T------NRP--------FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE---- 720 (836)
Q Consensus 663 ~ld~~~~~~~~-~vlVIaT-T------n~~--------~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~---- 720 (836)
. ... ++++|.| + |.. ..+++.++. ++ .+|.|.+-...-..+.|+.++..+
T Consensus 162 ---~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 162 ---S----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred ---c----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 1 112 6777776 1 111 135677776 33 578898888888888888888765
Q ss_pred -CC--CC-ccc-HHHHHHHcCCCcHHHHHHHHHHH
Q 003253 721 -DL--SP-DVD-FDAIANMTDGYSGSDLKNLCVTA 750 (836)
Q Consensus 721 -~l--~~-d~d-l~~LA~~t~G~sg~DL~~L~~~A 750 (836)
+. .+ ... ++.|+..+.| ||+.++..-
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~L 264 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNG----DIRSAINNL 264 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCc----hHHHHHHHH
Confidence 11 12 222 6677776555 555554433
No 271
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.37 E-value=6.4e-06 Score=90.38 Aligned_cols=61 Identities=25% Similarity=0.225 Sum_probs=45.1
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
||++|=+. ++.+..|..+.-..... ....+.+||+||||+ ++++||+++|++++.++..++
T Consensus 2 ~~~~~iG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~Gp~G~--GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 2 LLAEFIGQ--EKVKEQLQLFIEAAKMR----------QEALDHLLLYGPPGL--GKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CHHHHcCH--HHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCC--CHHHHHHHHHHHhCCCEEEec
Confidence 57777777 88888877766433222 123456999999999 999999999999987765543
No 272
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.37 E-value=1e-05 Score=91.83 Aligned_cols=85 Identities=27% Similarity=0.421 Sum_probs=63.3
Q ss_pred cCCCccccccccccccccchhHHHHHHHHHHhccCCccc--cccc-ccccCCCCceeeecCCCchHHHHHHHHHHHhHhC
Q 003253 16 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDH--AKYT-SELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 92 (836)
Q Consensus 16 v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~--~~~~-~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~ 92 (836)
+..|.+|.-.++++ -+--|+.|..|.-|+|-|.+.-.. .... .+..-....|||.||||| ++++|||+||+.++
T Consensus 65 ~~~p~~i~~~L~~~-ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~Gs--GKT~lAraLA~~l~ 141 (413)
T TIGR00382 65 LPTPKEIKAHLDEY-VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGS--GKTLLAQTLARILN 141 (413)
T ss_pred CCCHHHHHHHhcce-ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCc--CHHHHHHHHHHhcC
Confidence 55677777777765 122488999999999999887432 1110 122334578999999999 99999999999999
Q ss_pred CeEEEEecccc
Q 003253 93 AKLLIFDSHSL 103 (836)
Q Consensus 93 ~~ll~~d~~~~ 103 (836)
+++..+|.+.|
T Consensus 142 ~pf~~~da~~L 152 (413)
T TIGR00382 142 VPFAIADATTL 152 (413)
T ss_pred CCeEEechhhc
Confidence 99999887554
No 273
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.36 E-value=1.3e-06 Score=100.61 Aligned_cols=175 Identities=18% Similarity=0.268 Sum_probs=98.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhc-----ccccHHHH-------HHHHHHHHhcCCceEEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKYV-------KAVFSLASKIAPSVIFV 634 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~-----~g~~e~~i-------~~lf~~A~~~~psIL~I 634 (836)
..++++|.+||||+++|+++.... +.||+.++|..+.... +|...... ...+. ....++|||
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 239 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFV---EADGGTLFL 239 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCcee---ECCCCEEEE
Confidence 579999999999999999998776 5799999998753321 22111100 01112 224689999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHH
Q 003253 635 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 707 (836)
Q Consensus 635 DEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~ 707 (836)
|||+.| +...+..+.+.+++-.....+.......++.+|+||+.. ..+.+.+..|+ ..+.+..|+..
T Consensus 240 dei~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLr 313 (441)
T PRK10365 240 DEIGDI-----SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLR 313 (441)
T ss_pred eccccC-----CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999998 333333222222211100111111112356778777653 23556666677 45777788877
Q ss_pred HHHH----HHHHHHhhC----CC----CCcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 708 NRAK----ILQVILAKE----DL----SPDVDFDAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 708 eR~~----Il~~~l~~~----~l----~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
+|.+ +++.++.+. +. -.+..+..|....-.-+.++|.++++.|+..
T Consensus 314 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 314 QRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred hcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 7655 555555431 11 1222334444444344567777777776643
No 274
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.4e-05 Score=92.74 Aligned_cols=74 Identities=11% Similarity=0.213 Sum_probs=58.0
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
..-||||||+|.+- .+..+.|...|+..++.+++|+++|.+.
T Consensus 117 ~~kVvIIDE~h~Lt---~~a~~~LLk~LE~p~~~vv~Ilattn~~----------------------------------- 158 (472)
T PRK14962 117 KYKVYIIDEVHMLT---KEAFNALLKTLEEPPSHVVFVLATTNLE----------------------------------- 158 (472)
T ss_pred CeEEEEEEChHHhH---HHHHHHHHHHHHhCCCcEEEEEEeCChH-----------------------------------
Confidence 34599999999852 3345667788888888999999988553
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++..+|.+|+ ..+++..|+.++...+++....
T Consensus 159 --------kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~ 190 (472)
T PRK14962 159 --------KVPPTIISRC-QVIEFRNISDELIIKRLQEVAE 190 (472)
T ss_pred --------hhhHHHhcCc-EEEEECCccHHHHHHHHHHHHH
Confidence 4566788888 6999999999998888886553
No 275
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.30 E-value=5.3e-06 Score=91.44 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhccC-CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCC
Q 003253 274 LLINTLFEVVFSESR-SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGS 352 (836)
Q Consensus 274 ~~i~~l~~~~~~~~~-~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~ 352 (836)
+-|+.++|.+..... -.-.||||||||.+=-.++++ |.+.++. |.|++|||||-.++
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~--G~iilIGATTENPs----------------- 144 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVEN--GTIILIGATTENPS----------------- 144 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhh---hhhhhcC--CeEEEEeccCCCCC-----------------
Confidence 334455555533111 346799999999944455555 5677765 99999999997653
Q ss_pred chhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhh
Q 003253 353 NQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 353 ~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l 409 (836)
+++..+|..|- ..+++.+=+.++-.+.+++-+
T Consensus 145 ------------------------F~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 145 ------------------------FELNPALLSRA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred ------------------------eeecHHHhhhh-heeeeecCCHHHHHHHHHHHH
Confidence 26778888887 688888888888888888633
No 276
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.30 E-value=9.2e-06 Score=91.02 Aligned_cols=226 Identities=23% Similarity=0.313 Sum_probs=136.1
Q ss_pred CHHHHHHHHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 003253 511 TENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590 (836)
Q Consensus 511 ~~~d~~~~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA 590 (836)
...||...+...+.| +|.|++++|+.|.-++.+...+.. ..+--.+..-+|+|.|.||+.|+.|.+++.
T Consensus 328 ~~~d~yekLa~SiAP---------EIyGheDVKKaLLLlLVGgvd~~~--~dGMKIRGdINicLmGDPGVAKSQLLkyi~ 396 (721)
T KOG0482|consen 328 AEGDFYEKLAASIAP---------EIYGHEDVKKALLLLLVGGVDKSP--GDGMKIRGDINICLMGDPGVAKSQLLKYIS 396 (721)
T ss_pred hcccHHHHHHHhhch---------hhccchHHHHHHHHHhhCCCCCCC--CCCceeecceeEEecCCCchhHHHHHHHHH
Confidence 344555545555544 689999999998887765332211 011111223469999999999999999998
Q ss_pred HHhCCCcceee---------ccccchhcccccHHHH-HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHH
Q 003253 591 TEAGANFINIS---------MSSITSKWFGEGEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 660 (836)
Q Consensus 591 ~~l~~~~i~v~---------~s~l~s~~~g~~e~~i-~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~l 660 (836)
+-.-..++.-- ++-+.....|+. .+ ...+-.|. .+|..|||+|.+. .....+...++.+.
T Consensus 397 rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM--~LEGGALVLAD---~GICCIDEfDKM~-----e~DRtAIHEVMEQQ 466 (721)
T KOG0482|consen 397 RLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEM--VLEGGALVLAD---GGICCIDEFDKMD-----ESDRTAIHEVMEQQ 466 (721)
T ss_pred hcCcccceecCCCCCccccchhhhcCCCCCee--EeccceEEEcc---CceEeehhhhhhh-----hhhhHHHHHHHHhh
Confidence 87643333221 111111111110 00 01112222 3799999999993 33444555555544
Q ss_pred HHH--hcCCcccCcccEEEEeccCCCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHhh--CCC
Q 003253 661 MVN--WDGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAK--EDL 722 (836)
Q Consensus 661 l~~--ld~~~~~~~~~vlVIaTTn~~~-------------~Ld~~l~rRf~~~I~v-~~P~~~eR~~Il~~~l~~--~~l 722 (836)
-.. -.|+.+.-+.+.-|+|++|... .|+.++++|||..+-+ +.|+.+.-..+.+++.-- +.-
T Consensus 467 TISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~ 546 (721)
T KOG0482|consen 467 TISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEE 546 (721)
T ss_pred hhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCC
Confidence 333 3566666678899999999742 4889999999965554 678888888887775532 111
Q ss_pred CCc-----ccHH------HHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 003253 723 SPD-----VDFD------AIANMTDGYSGSDLKNLCVTAAHRPIKE 757 (836)
Q Consensus 723 ~~d-----~dl~------~LA~~t~G~sg~DL~~L~~~A~~~air~ 757 (836)
.+. .+.+ .+|+....+.+.+|...+..|-....++
T Consensus 547 qp~~~fepl~~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 547 QPPLDFEPLDPNLMRRYISLAKRKNPVVPEALADYITGAYVELRRE 592 (721)
T ss_pred CCCccCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 111 2322 3455666778888888888777665554
No 277
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.27 E-value=5e-06 Score=91.26 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=48.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhccccc-HHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~~-e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
..+++|+||+|+|||+||.|+|+++ |.++..+.+++++..+.... .......+.... ...+|+|||+..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 4689999999999999999999998 77788788777654432110 011223333322 4579999999744
No 278
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.27 E-value=1.3e-06 Score=103.55 Aligned_cols=174 Identities=28% Similarity=0.335 Sum_probs=105.1
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce-eeccc---cc----
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSS---IT---- 606 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~-v~~s~---l~---- 606 (836)
.|.|++.+|+.+.-.+....... ...+.-.+.--+|||.|.||+|||.|.+.+++.+-..++. -..+. |.
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k~--~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~ 364 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKKN--LPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVV 364 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCccc--CCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEE
Confidence 47899999998876665432211 0011111222579999999999999999999887443322 11111 10
Q ss_pred -hhcccccHHHH-HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhc--CCcccCcccEEEEeccC
Q 003253 607 -SKWFGEGEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDTERILVLAATN 682 (836)
Q Consensus 607 -s~~~g~~e~~i-~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld--~~~~~~~~~vlVIaTTn 682 (836)
....| +..+ ..++-.| .++|..|||+|.| +.....++...+.+....+. |+...-+.+.-|+|++|
T Consensus 365 rd~~tg--e~~LeaGALVlA---D~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaN 434 (682)
T COG1241 365 RDKVTG--EWVLEAGALVLA---DGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAAN 434 (682)
T ss_pred EccCCC--eEEEeCCEEEEe---cCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhC
Confidence 00001 0000 0111112 4589999999988 44445555555544433332 33344457788999999
Q ss_pred CCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHhhC
Q 003253 683 RPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAKE 720 (836)
Q Consensus 683 ~~~-------------~Ld~~l~rRf~~~I~v-~~P~~~eR~~Il~~~l~~~ 720 (836)
+.. +|++.+++|||..+.+ ..|+.+.-..+..+.+..+
T Consensus 435 P~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 435 PKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred CCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 864 4788999999977665 5688877777777766554
No 279
>PF13173 AAA_14: AAA domain
Probab=98.25 E-value=2.6e-06 Score=81.37 Aligned_cols=69 Identities=29% Similarity=0.433 Sum_probs=47.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~--~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
+.++|+||.|+|||++++.+++.+. -+++.+++.+.......... +...+.......+.+||||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999999886 77888887765332111111 222222222225689999999977
No 280
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.24 E-value=1.8e-06 Score=100.06 Aligned_cols=177 Identities=26% Similarity=0.303 Sum_probs=113.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCCcceeeccccc-----hhcccccHHHHHHHHHHHHh-----cCCceEEEccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSIT-----SKWFGEGEKYVKAVFSLASK-----IAPSVIFVDEV 637 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l--~~~~i~v~~s~l~-----s~~~g~~e~~i~~lf~~A~~-----~~psIL~IDEI 637 (836)
-.+|+.|.|||||-.+|+++.... ..||+.++|..+- +.++|..+......+..-++ ...+.+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 469999999999999999998877 5789999997653 33444333322222111111 12379999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHHHHH
Q 003253 638 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNRA 710 (836)
Q Consensus 638 D~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR~ 710 (836)
..| +-..|..+.+++++-.+.--|... ....|.||++|++. ..+.+.+.-|+ ..+.+.+|...+|.
T Consensus 417 gd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~R~ 489 (606)
T COG3284 417 GDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRERS 489 (606)
T ss_pred hhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhccc
Confidence 988 556677777887776555444444 55789999999874 23555565577 46677788877775
Q ss_pred H---HHHHHHhhCCC-CCcccHHHHHH---HcCCCcHHHHHHHHHHHHHH
Q 003253 711 K---ILQVILAKEDL-SPDVDFDAIAN---MTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 711 ~---Il~~~l~~~~l-~~d~dl~~LA~---~t~G~sg~DL~~L~~~A~~~ 753 (836)
. .|..++.+... .-..+-+.++. ..-.-+.++|.+++..++..
T Consensus 490 d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l 539 (606)
T COG3284 490 DRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAAL 539 (606)
T ss_pred ccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Confidence 5 45555544332 22333333333 33334667788888777754
No 281
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2e-05 Score=88.34 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=58.4
Q ss_pred cccccccccc---------cchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCC
Q 003253 23 QESFENFPYY---------LSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 93 (836)
Q Consensus 23 ~~~~~~fpy~---------l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~ 93 (836)
+-.|..||+= +....|.-+++-..-.++.+++ |.+.=-+=-|+-||+||||| ++-.++=|+|+|++=
T Consensus 186 ~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~--YkrvGkawKRGYLLYGPPGT--GKSS~IaAmAn~L~y 261 (457)
T KOG0743|consen 186 GGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDF--YKRVGKAWKRGYLLYGPPGT--GKSSFIAAMANYLNY 261 (457)
T ss_pred CCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchH--HHhcCcchhccceeeCCCCC--CHHHHHHHHHhhcCC
Confidence 4456666653 5688999999999999999999 65544556778999999999 999999999999886
Q ss_pred eEEEEe
Q 003253 94 KLLIFD 99 (836)
Q Consensus 94 ~ll~~d 99 (836)
....|.
T Consensus 262 dIydLe 267 (457)
T KOG0743|consen 262 DIYDLE 267 (457)
T ss_pred ceEEee
Confidence 555554
No 282
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.22 E-value=3.1e-06 Score=93.64 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=47.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccc---cHHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~---~e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
.+++|+||+|+|||+||.|+|+++ |..++.++..++....... ........+.... ...+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 689999999999999999999987 7788888887775543210 0001111122222 3579999999765
No 283
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.21 E-value=5.7e-05 Score=84.93 Aligned_cols=96 Identities=14% Similarity=0.192 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCcchhhHHHHH--HhcCC-CcEEEEeeeccCCCccccCCCCCccccc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSR--LEKLP-DKVIVIGSHTHTDNRKEKSHPGGLLFTK 349 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~~~~~~l~~~--l~~l~-g~v~vIgs~~~~d~~~~~~~~~~~~~~~ 349 (836)
..+++.+++.+.. ...|+||+|||+|.+.....++...|... ....+ .+|.+||.+|.++..
T Consensus 114 ~~~~~~l~~~l~~--~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~------------- 178 (365)
T TIGR02928 114 SEVFRRLYKELNE--RGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFR------------- 178 (365)
T ss_pred HHHHHHHHHHHHh--cCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchH-------------
Confidence 3446666666543 25689999999999764444433333222 12333 589999999987520
Q ss_pred cCCchhhhccccCCCccccccccCCCchhHHHHHhhhC-CceEEecCCChHHHHHHHHHhhH
Q 003253 350 FGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLF-PNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 350 ~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F-~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
+ .++..+..+| +..|.+++++.++...|++..+.
T Consensus 179 ---------~------------------~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 179 ---------E------------------NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred ---------h------------------hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 0 2234455556 47899999999999999996664
No 284
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.21 E-value=5.8e-06 Score=78.48 Aligned_cols=98 Identities=15% Similarity=0.312 Sum_probs=59.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCCcceeeccccch----------h----ccc--ccHHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITS----------K----WFG--EGEKYVKAVFSLAS 625 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l--------~~~~i~v~~s~l~s----------~----~~g--~~e~~i~~lf~~A~ 625 (836)
+.++++||+|+|||++++.++..+ ..+++.++++...+ . ... ........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 579999999999999999999987 67777777654220 0 001 12233344445555
Q ss_pred hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccC
Q 003253 626 KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 682 (836)
Q Consensus 626 ~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn 682 (836)
+....+|+|||+|.+. ...+++.+...++ ..+-+++++++.+
T Consensus 85 ~~~~~~lviDe~~~l~-----------~~~~l~~l~~l~~----~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-----------SDEFLEFLRSLLN----ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-----------THHHHHHHHHHTC----SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-----------CHHHHHHHHHHHh----CCCCeEEEEEChh
Confidence 5555699999999984 0334444444444 2335566666653
No 285
>PRK06526 transposase; Provisional
Probab=98.20 E-value=2.3e-06 Score=91.57 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=46.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccc-cHHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~-~e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
.+++|+||||||||+||.+|+.++ |..++.+++.+++...... ....+...+... ..+.+|+|||++.+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 589999999999999999999876 6777777776665443211 011122222222 34689999999976
No 286
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.17 E-value=1.9e-06 Score=87.35 Aligned_cols=70 Identities=27% Similarity=0.461 Sum_probs=46.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhccccc-HHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~~-e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
..+++|+||+|+|||+||.++++++ |.++..++.++++....... .......+.... ...+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 3689999999999999999999877 88888888888765432211 111223333333 3579999999743
No 287
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.16 E-value=3.8e-05 Score=84.73 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=56.8
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
.+-||+|||+|.+ +..+..+.|...++..++++.+|.++|..+
T Consensus 100 ~~~vliiDe~d~l--~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~----------------------------------- 142 (316)
T PHA02544 100 GGKVIIIDEFDRL--GLADAQRHLRSFMEAYSKNCSFIITANNKN----------------------------------- 142 (316)
T ss_pred CCeEEEEECcccc--cCHHHHHHHHHHHHhcCCCceEEEEcCChh-----------------------------------
Confidence 4569999999974 223355677777888778888888887553
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhh
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l 409 (836)
.+.++|.+|| ..+.++.|+.+++..+++..+
T Consensus 143 --------~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 143 --------GIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred --------hchHHHHhhc-eEEEeCCCCHHHHHHHHHHHH
Confidence 4567788999 589999999999999888544
No 288
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.13 E-value=2.1e-05 Score=90.64 Aligned_cols=217 Identities=18% Similarity=0.210 Sum_probs=129.4
Q ss_pred CHHHHHHHHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 003253 511 TENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 590 (836)
Q Consensus 511 ~~~d~~~~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA 590 (836)
..+++.+.+...+.| .|.|++.+|.-+.-.+.+....... .... .+.--+|+|.|.||+||+.+.++.+
T Consensus 331 ~~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K~a~-eg~~-lRGDinv~iVGDPgt~KSQfLk~v~ 399 (764)
T KOG0480|consen 331 KDENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHKSAG-EGTS-LRGDINVCIVGDPGTGKSQFLKAVC 399 (764)
T ss_pred cCchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCccccCC-CCcc-ccCCceEEEeCCCCccHHHHHHHHh
Confidence 344555666666555 5889999999887777654432221 1111 1222469999999999999999998
Q ss_pred HHhCCCcceeec----cccchhcccccH--HHH--HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 591 TEAGANFINISM----SSITSKWFGEGE--KYV--KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 591 ~~l~~~~i~v~~----s~l~s~~~g~~e--~~i--~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
.-+-..++.--- +.|....+...+ .+. ...+-.| ..+|..|||+|.| +..+|.++...+++.-.
T Consensus 400 ~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLA---DnGICCIDEFDKM-----d~~dqvAihEAMEQQtI 471 (764)
T KOG0480|consen 400 AFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLA---DNGICCIDEFDKM-----DVKDQVAIHEAMEQQTI 471 (764)
T ss_pred ccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEc---cCceEEechhccc-----ChHhHHHHHHHHHhhee
Confidence 877443332111 011000000000 000 0011112 3489999999999 44445555555544333
Q ss_pred Hh--cCCcccCcccEEEEeccCCCC-------------CCcHHHHhhccccc-cCCCCCHHHHHHHHHHHHhhCCCCCcc
Q 003253 663 NW--DGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRL-MVNLPDAPNRAKILQVILAKEDLSPDV 726 (836)
Q Consensus 663 ~l--d~~~~~~~~~vlVIaTTn~~~-------------~Ld~~l~rRf~~~I-~v~~P~~~eR~~Il~~~l~~~~l~~d~ 726 (836)
.+ .|+...-+.+.-|||++|+.. .+.+++++|||..+ .++.|+...-..|-++++..+..-.+.
T Consensus 472 SIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~ 551 (764)
T KOG0480|consen 472 SIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDA 551 (764)
T ss_pred hheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccc
Confidence 33 333334456778899999853 47789999999654 458899999999999988765432111
Q ss_pred cHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 727 DFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 727 dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
.....+|+..+++..+..|.
T Consensus 552 -----~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 552 -----TERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred -----ccccccccHHHHHHHHHHHH
Confidence 11124677777777766554
No 289
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.12 E-value=4.9e-05 Score=87.18 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=55.7
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
.+..||||||||.+-. ...+.|.+.|+. +.+++||+|+....
T Consensus 91 g~~~vL~IDEi~~l~~---~~q~~LL~~le~--~~iilI~att~n~~--------------------------------- 132 (413)
T PRK13342 91 GRRTILFIDEIHRFNK---AQQDALLPHVED--GTITLIGATTENPS--------------------------------- 132 (413)
T ss_pred CCceEEEEechhhhCH---HHHHHHHHHhhc--CcEEEEEeCCCChh---------------------------------
Confidence 4678999999998432 223455566654 78999999875431
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
..++.+|..|+ ..+.+..|+.++...+++..+.+
T Consensus 133 --------~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 133 --------FEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred --------hhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 13456688888 78999999999999999866643
No 290
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.09 E-value=7.5e-06 Score=87.59 Aligned_cols=70 Identities=24% Similarity=0.425 Sum_probs=49.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccccHH-HH-HHHHHHHHhcCCceEEEccchhh
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-YV-KAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~~e~-~i-~~lf~~A~~~~psIL~IDEID~L 640 (836)
..+++|+||||+|||+||.|||+++ |..++.+..++++...-..-.. .. ..+.... ....+|+|||+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 3689999999999999999999988 7888888888876653221110 11 1111112 23579999999865
No 291
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2e-06 Score=91.73 Aligned_cols=87 Identities=25% Similarity=0.432 Sum_probs=65.2
Q ss_pred ccCCCcccccccccccccc-chhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCC
Q 003253 15 GILDGTNLQESFENFPYYL-SENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 93 (836)
Q Consensus 15 ~v~~~~~~~~~~~~fpy~l-~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~ 93 (836)
.+-.|.+|.--.|+| -+ -|..|.+|-=|+|-|-|.=.......+.-=.--+|||-||.|| +++.||+.||+.++|
T Consensus 48 ~lPtP~eik~~Ld~Y--VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGs--GKTlLAqTLAk~LnV 123 (408)
T COG1219 48 ELPTPKEIKAHLDEY--VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGS--GKTLLAQTLAKILNV 123 (408)
T ss_pred cCCChHHHHHHhhhh--eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCC--cHHHHHHHHHHHhCC
Confidence 356677777666652 22 5889999999999997763332222223334457999999999 999999999999999
Q ss_pred eEEEEeccccCC
Q 003253 94 KLLIFDSHSLLG 105 (836)
Q Consensus 94 ~ll~~d~~~~~~ 105 (836)
||-+-|++.|.-
T Consensus 124 PFaiADATtLTE 135 (408)
T COG1219 124 PFAIADATTLTE 135 (408)
T ss_pred Ceeeccccchhh
Confidence 999999877744
No 292
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=4.3e-05 Score=82.80 Aligned_cols=121 Identities=13% Similarity=0.105 Sum_probs=77.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCCcc--------eeeccccchhc-ccc----cHHHHHHHHHHHHhc----CC
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSKW-FGE----GEKYVKAVFSLASKI----AP 629 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i--------~v~~s~l~s~~-~g~----~e~~i~~lf~~A~~~----~p 629 (836)
+-++.+||+||.|+||+.+|.++|..+-+.-. .-..+++.--. .|. .-..++.+...+... ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 44578999999999999999999998844210 01112221000 011 123455555554433 33
Q ss_pred ceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCC
Q 003253 630 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 704 (836)
Q Consensus 630 sIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P 704 (836)
.|++||++|.| +. ...+.++..++. ++.++++|..|+.++.+.|.+++|+ ..+.|+.+
T Consensus 97 kv~ii~~ad~m-----t~-------~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRM-----TL-------DAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhc-----CH-------HHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 69999999998 22 223444444443 4467888888999999999999999 56677654
No 293
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.06 E-value=0.00012 Score=76.79 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=73.8
Q ss_pred HHHHHHHHhhccCCCCeEEEEcCchhhhccCcchhhHHHHHHhcC----CCcEEEEeeeccCCCccccCCCCCccccccC
Q 003253 276 INTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKL----PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 351 (836)
Q Consensus 276 i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l----~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~ 351 (836)
+..|++++.. +..+.|||+||.. +......|..||+.|+.. +.||+|..+.|+-.-.+|.
T Consensus 94 l~~l~~~l~~--~~~kFIlf~DDLs--Fe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~------------ 157 (249)
T PF05673_consen 94 LPELLDLLRD--RPYKFILFCDDLS--FEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPES------------ 157 (249)
T ss_pred HHHHHHHHhc--CCCCEEEEecCCC--CCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchh------------
Confidence 3445555553 3678999999976 888899999999999653 6799999999987533333
Q ss_pred CchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhh
Q 003253 352 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 352 ~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l 409 (836)
+.|..- -+...+ ...+..+--=.|.-||+..+.+..|+.++=++|.+...
T Consensus 158 -----~~d~~~-~~~~ei--h~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~ 207 (249)
T PF05673_consen 158 -----FSDRED-IQDDEI--HPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYA 207 (249)
T ss_pred -----hhhccC-CCcccc--CcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHH
Confidence 111000 000000 01122222335789999999999999999999999655
No 294
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.05 E-value=3e-05 Score=83.48 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=32.8
Q ss_pred CCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 64 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 64 ~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
+++.|||.||||| ++++||++||+.+|.+++.+..+
T Consensus 20 ~g~~vLL~G~~Gt--GKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 20 SGYPVHLRGPAGT--GKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred cCCeEEEEcCCCC--CHHHHHHHHHHHhCCCEEEEeCC
Confidence 4678999999999 99999999999999999999754
No 295
>PRK09183 transposase/IS protein; Provisional
Probab=98.04 E-value=9.5e-06 Score=87.12 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=47.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccc-cHHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~-~e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
.+++|+||||||||+||.+++..+ |..+..+++.++...+... ....+..++... ...+.+++|||++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 579999999999999999998765 6677777776665332111 111233444433 235689999999865
No 296
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.04 E-value=2.7e-05 Score=80.65 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=39.0
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+||+|=+= ++.+..|.-..-.-.+..+ .-.-+||+||||+ ++++||+.+|+++++++-.+.
T Consensus 22 ~L~efiGQ--~~l~~~l~i~i~aa~~r~~----------~l~h~lf~GPPG~--GKTTLA~IIA~e~~~~~~~~s 82 (233)
T PF05496_consen 22 SLDEFIGQ--EHLKGNLKILIRAAKKRGE----------ALDHMLFYGPPGL--GKTTLARIIANELGVNFKITS 82 (233)
T ss_dssp SCCCS-S---HHHHHHHHHHHHHHHCTTS-------------EEEEESSTTS--SHHHHHHHHHHHCT--EEEEE
T ss_pred CHHHccCc--HHHHhhhHHHHHHHHhcCC----------CcceEEEECCCcc--chhHHHHHHHhccCCCeEecc
Confidence 68888887 7777665432221122222 2234999999998 999999999999999987654
No 297
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00015 Score=84.80 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=59.2
Q ss_pred CeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 003253 291 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 370 (836)
Q Consensus 291 p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~ 370 (836)
.-|++|||+|.+ +....+.|...|+..+..+++|.+||..+
T Consensus 129 ~KVvIIDEa~~L---s~~a~naLLk~LEepp~~~vfI~aTte~~------------------------------------ 169 (507)
T PRK06645 129 HKIFIIDEVHML---SKGAFNALLKTLEEPPPHIIFIFATTEVQ------------------------------------ 169 (507)
T ss_pred cEEEEEEChhhc---CHHHHHHHHHHHhhcCCCEEEEEEeCChH------------------------------------
Confidence 448999999973 24567778888888888999998887654
Q ss_pred ccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 371 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 371 ~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++.+.|.+|. ..+++..++.++...+++..+.+
T Consensus 170 -------kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~ 202 (507)
T PRK06645 170 -------KIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQ 202 (507)
T ss_pred -------HhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 5567788888 78999999999999999877754
No 298
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=8.4e-05 Score=86.21 Aligned_cols=75 Identities=9% Similarity=0.142 Sum_probs=59.6
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
..=|++|||+|. + +.+..|.|...|+.-+..+++|.++|..+
T Consensus 116 ~~KVvIIDEah~-L--s~~A~NaLLK~LEePp~~v~fIlatte~~----------------------------------- 157 (491)
T PRK14964 116 KFKVYIIDEVHM-L--SNSAFNALLKTLEEPAPHVKFILATTEVK----------------------------------- 157 (491)
T ss_pred CceEEEEeChHh-C--CHHHHHHHHHHHhCCCCCeEEEEEeCChH-----------------------------------
Confidence 345999999997 3 34567888889999888999999987554
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++-+.|.+|. ..+++..++.++....++....+
T Consensus 158 --------Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~ 190 (491)
T PRK14964 158 --------KIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKK 190 (491)
T ss_pred --------HHHHHHHHhh-eeeecccccHHHHHHHHHHHHHH
Confidence 4566788888 79999999999888888865543
No 299
>PF05729 NACHT: NACHT domain
Probab=98.04 E-value=2.7e-05 Score=76.49 Aligned_cols=140 Identities=15% Similarity=0.267 Sum_probs=72.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--C------C-cceeeccccchh------------cccccHHHHHH-HHHHHHhcC
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAG--A------N-FINISMSSITSK------------WFGEGEKYVKA-VFSLASKIA 628 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~--~------~-~i~v~~s~l~s~------------~~g~~e~~i~~-lf~~A~~~~ 628 (836)
-++|+|+||+|||++++.++..+. . + ++.+.+.+.... ........+.. ....+.+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999998771 1 1 122333222111 00111111122 222334556
Q ss_pred CceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhcc--ccccCCCCCH
Q 003253 629 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLP--RRLMVNLPDA 706 (836)
Q Consensus 629 psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~--~~I~v~~P~~ 706 (836)
..+|+||.+|.+...... .........+..++ .... ..+.+++| |+. +..... +.+.+. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~---~~~~-~~~~~lii--t~r-~~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLL---PQAL-PPGVKLII--TSR-PRAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHh---hhcc-CCCCeEEE--EEc-CChHHH-HHHhcCCCcEEEECCCCH
Confidence 679999999999532211 01111222233332 2211 11233333 333 222222 444333 3478888899
Q ss_pred HHHHHHHHHHHhh
Q 003253 707 PNRAKILQVILAK 719 (836)
Q Consensus 707 ~eR~~Il~~~l~~ 719 (836)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988753
No 300
>PRK06921 hypothetical protein; Provisional
Probab=98.02 E-value=1.1e-05 Score=86.92 Aligned_cols=67 Identities=25% Similarity=0.361 Sum_probs=44.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDS 639 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~ 639 (836)
.+++|+||||+|||+|+.|+|+++ +..++.++..+++....... ......+... ....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 689999999999999999999986 56677777666543321110 1111111211 2457999999953
No 301
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.01 E-value=4.6e-05 Score=88.46 Aligned_cols=79 Identities=23% Similarity=0.261 Sum_probs=55.1
Q ss_pred CeEEEEcCchhhhcc---CcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 003253 291 PFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 367 (836)
Q Consensus 291 p~Ilfi~ei~~~l~~---~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r 367 (836)
+-+|+||||+.+.+. ..++++.|....+. |..+||+++..+.. ++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~--~~~iiits~~~p~~----------------------l~-------- 259 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEA--GKQIVLTSDRPPKE----------------------LP-------- 259 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCcEEEECCCCHHH----------------------HH--------
Confidence 458999999974432 24566666555543 55677777765431 11
Q ss_pred cccccCCCchhHHHHHhhhCC--ceEEecCCChHHHHHHHHHhhHh
Q 003253 368 RLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~F~--~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
.+++.|..||. ..++|.+|+.++|..|++.....
T Consensus 260 ----------~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 260 ----------GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ----------HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 35667888896 48999999999999999976643
No 302
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=0.00013 Score=79.27 Aligned_cols=169 Identities=14% Similarity=0.149 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcc-------------ee---ec
Q 003253 539 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------------NI---SM 602 (836)
Q Consensus 539 ~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i-------------~v---~~ 602 (836)
+..+.+.|+..+.. .+.++.+||+|| .||+.+|+++|..+-+.-. .+ +.
T Consensus 7 q~~~~~~L~~~~~~-------------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~H 71 (290)
T PRK07276 7 QPKVFQRFQTILEQ-------------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEF 71 (290)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 34555666665542 344578999996 6899999999988733210 00 11
Q ss_pred cccchh-cccc--cHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccE
Q 003253 603 SSITSK-WFGE--GEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI 675 (836)
Q Consensus 603 s~l~s~-~~g~--~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~v 675 (836)
+++.-- -.|. .-..++.+...+... ...|++||++|.| + ....|.|+..++. ++.++
T Consensus 72 PD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m-----~-------~~AaNaLLKtLEE----Pp~~t 135 (290)
T PRK07276 72 SDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM-----H-------VNAANSLLKVIEE----PQSEI 135 (290)
T ss_pred CCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc-----C-------HHHHHHHHHHhcC----CCCCe
Confidence 222100 0011 123455555544432 3469999999998 2 2233445555544 34568
Q ss_pred EEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHH
Q 003253 676 LVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 676 lVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
++|.+|+.++.+-|.+++|+ ..+.|+. +.+...+++ ...++..+ ....++.. .| ++.....+.
T Consensus 136 ~~iL~t~~~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L----~~~g~~~~-~a~~la~~-~~-s~~~A~~l~ 198 (290)
T PRK07276 136 YIFLLTNDENKVLPTIKSRT-QIFHFPK-NEAYLIQLL----EQKGLLKT-QAELLAKL-AQ-STSEAEKLA 198 (290)
T ss_pred EEEEEECChhhCchHHHHcc-eeeeCCC-cHHHHHHHH----HHcCCChH-HHHHHHHH-CC-CHHHHHHHh
Confidence 88888999999999999999 6788865 444444443 34444322 22334443 34 555555555
No 303
>PRK04195 replication factor C large subunit; Provisional
Probab=98.00 E-value=0.00014 Score=85.25 Aligned_cols=63 Identities=25% Similarity=0.303 Sum_probs=48.1
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccc
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 102 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~ 102 (836)
+|+++-+. +..+..|.+.+--+.+. ...+.+||+||||+ ++++||+|||++++..++.++.++
T Consensus 12 ~l~dlvg~--~~~~~~l~~~l~~~~~g-----------~~~~~lLL~GppG~--GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 12 TLSDVVGN--EKAKEQLREWIESWLKG-----------KPKKALLLYGPPGV--GKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CHHHhcCC--HHHHHHHHHHHHHHhcC-----------CCCCeEEEECCCCC--CHHHHHHHHHHHcCCCEEEEcccc
Confidence 56666655 88888888776443311 12678999999998 999999999999998888877654
No 304
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00021 Score=80.58 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=56.8
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
..-|++|||+|.+ . .+..+.|...|+..++++.+|.+++..+
T Consensus 119 ~~kviIIDEa~~l-~--~~a~naLLk~lEe~~~~~~fIl~t~~~~----------------------------------- 160 (363)
T PRK14961 119 RFKVYLIDEVHML-S--RHSFNALLKTLEEPPQHIKFILATTDVE----------------------------------- 160 (363)
T ss_pred CceEEEEEChhhc-C--HHHHHHHHHHHhcCCCCeEEEEEcCChH-----------------------------------
Confidence 3459999999984 2 3455667778888888888888776553
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++.+.|..|+ ..+++.+|+.++..++++..+.+
T Consensus 161 --------~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~ 193 (363)
T PRK14961 161 --------KIPKTILSRC-LQFKLKIISEEKIFNFLKYILIK 193 (363)
T ss_pred --------hhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 4456788888 79999999999999988865533
No 305
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.98 E-value=4.2e-05 Score=80.64 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=77.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCch
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 649 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~ 649 (836)
.+-.++||+|||||..++++|..+|.+++.++|++-.+ ...+.++|.-+... .+-+.+||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 46678999999999999999999999999999988543 34677777666664 489999999988 3222
Q ss_pred HHHHHHHHHHHHHHhcCCcc---------cCcccEEEEeccCC----CCCCcHHHHhhccccccCCCCCHHHHHHHH
Q 003253 650 HEAMRKMKNEFMVNWDGLRT---------KDTERILVLAATNR----PFDLDEAVIRRLPRRLMVNLPDAPNRAKIL 713 (836)
Q Consensus 650 ~~~~~~il~~ll~~ld~~~~---------~~~~~vlVIaTTn~----~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il 713 (836)
-......++.+...+..... .-+...-+..|.|. ...|++.++.-| +.+.+..||.....+++
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 22222222222222221110 01123445556663 346888888888 78888899877665554
No 306
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.96 E-value=3.4e-05 Score=75.28 Aligned_cols=71 Identities=24% Similarity=0.443 Sum_probs=47.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh----------------------cccc--cHHHHHHHHHHH
Q 003253 572 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WFGE--GEKYVKAVFSLA 624 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~----------------------~~g~--~e~~i~~lf~~A 624 (836)
++|+||||+|||+++..++... +.+++.++....... .... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998887 556666655432210 0001 111122334556
Q ss_pred HhcCCceEEEccchhhhc
Q 003253 625 SKIAPSVIFVDEVDSMLG 642 (836)
Q Consensus 625 ~~~~psIL~IDEID~L~~ 642 (836)
....|.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 677889999999998864
No 307
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.95 E-value=1.1e-05 Score=87.34 Aligned_cols=139 Identities=22% Similarity=0.338 Sum_probs=77.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC-C--cceeeccccchhcccccHHHHHHHHHHH----H-------hcCCceEEEc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGA-N--FINISMSSITSKWFGEGEKYVKAVFSLA----S-------KIAPSVIFVD 635 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~-~--~i~v~~s~l~s~~~g~~e~~i~~lf~~A----~-------~~~psIL~ID 635 (836)
+++||+||+|||||++++.+-..+.- . ...++++.. .+...+..+.+.. + ..+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 57999999999999999988766532 2 223333321 1112222221110 0 1123599999
Q ss_pred cchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcc------cCcccEEEEeccCCCC---CCcHHHHhhccccccCCCCCH
Q 003253 636 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAATNRPF---DLDEAVIRRLPRRLMVNLPDA 706 (836)
Q Consensus 636 EID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~------~~~~~vlVIaTTn~~~---~Ld~~l~rRf~~~I~v~~P~~ 706 (836)
|+..-.... -+.+.. ..++.+++.. .|... ..-.++.+||+++... .+++.++|.| .++.++.|+.
T Consensus 108 DlN~p~~d~--ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMPQPDK--YGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S---T--TS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCCCCCC--CCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 998543222 222222 2444444432 12211 1115688889887643 4788999988 6899999999
Q ss_pred HHHHHHHHHHHhh
Q 003253 707 PNRAKILQVILAK 719 (836)
Q Consensus 707 ~eR~~Il~~~l~~ 719 (836)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888764
No 308
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.95 E-value=5.3e-05 Score=87.98 Aligned_cols=175 Identities=19% Similarity=0.205 Sum_probs=99.7
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceee-ccccch--hccc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-MSSITS--KWFG 611 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~-~s~l~s--~~~g 611 (836)
.|.|++++|+-|.-.+....... +..++-.+.--+|||+|.||||||.+.+.+++.+..-.+.-- .+.-++ .|+.
T Consensus 430 sIye~edvKkglLLqLfGGt~k~--~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKE--DEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhcCCccc--ccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 58899999988776665432211 112221222357999999999999999999988733222100 000000 0000
Q ss_pred ccHHHHHHHHHH---HHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHH--HHHhcCCcccCcccEEEEeccCCCC-
Q 003253 612 EGEKYVKAVFSL---ASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF--MVNWDGLRTKDTERILVLAATNRPF- 685 (836)
Q Consensus 612 ~~e~~i~~lf~~---A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~l--l~~ld~~~~~~~~~vlVIaTTn~~~- 685 (836)
... ..+++.-+ .--+..+|..|||+|.| +......+.+++++- -....|+-..-+.+.-|||++|...
T Consensus 508 rd~-dtkqlVLesGALVLSD~GiCCIDEFDKM-----~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~s 581 (804)
T KOG0478|consen 508 KDP-DTRQLVLESGALVLSDNGICCIDEFDKM-----SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRS 581 (804)
T ss_pred ecC-ccceeeeecCcEEEcCCceEEchhhhhh-----hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccc
Confidence 000 00000000 01123479999999999 334444555555433 2233455555567889999999632
Q ss_pred ------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHH
Q 003253 686 ------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVIL 717 (836)
Q Consensus 686 ------------~Ld~~l~rRf~~~I~v-~~P~~~eR~~Il~~~l 717 (836)
.|++.+++||+.++-+ +.|+...-+.+..++.
T Consensus 582 kynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 582 KYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred cCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 4889999999876543 6777765555555544
No 309
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.95 E-value=0.00033 Score=80.06 Aligned_cols=197 Identities=16% Similarity=0.231 Sum_probs=103.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeecc-------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS------- 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s------- 603 (836)
.+.+++.-+..-..+++.++. ++ ..+.. .-+.+-+||+||+|||||+.++.|++++|..++...-+
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~-~~---~~~~~---~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLK-QV---AEFTP---KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHH-HH---HHhcc---CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 356676666554455554443 11 01111 11224689999999999999999999999888775521
Q ss_pred ccchhcccccHHH------HHHHHHHHHh------------cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhc
Q 003253 604 SITSKWFGEGEKY------VKAVFSLASK------------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 665 (836)
Q Consensus 604 ~l~s~~~g~~e~~------i~~lf~~A~~------------~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld 665 (836)
.+.....+-...+ .......+.+ ..+.+|+|||+-..+... ..+..+.++.. +-
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~~----y~ 223 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLRL----YV 223 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHHH----HH
Confidence 1111111111111 1112233322 145699999998775332 22333444442 21
Q ss_pred CCcccCcccEEEEec-cCCCCCCcHHHH--------hhccccccCCCCCHHHHHHHHHHHHhhCCCC-------CcccHH
Q 003253 666 GLRTKDTERILVLAA-TNRPFDLDEAVI--------RRLPRRLMVNLPDAPNRAKILQVILAKEDLS-------PDVDFD 729 (836)
Q Consensus 666 ~~~~~~~~~vlVIaT-Tn~~~~Ld~~l~--------rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-------~d~dl~ 729 (836)
.. ...++++|.| +..++..++..+ -|. ..|.|.+-...-.++.|+.++..+... ....++
T Consensus 224 s~---g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 224 SI---GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred hc---CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 11 1233444333 223333332211 155 467888888888888888888765322 133445
Q ss_pred HHHHHcCCCcHHHHHHHHHHH
Q 003253 730 AIANMTDGYSGSDLKNLCVTA 750 (836)
Q Consensus 730 ~LA~~t~G~sg~DL~~L~~~A 750 (836)
.++..+.| ||+.++..-
T Consensus 300 ~i~~~s~G----DIRsAInsL 316 (634)
T KOG1970|consen 300 LICQGSGG----DIRSAINSL 316 (634)
T ss_pred HHHHhcCc----cHHHHHhHh
Confidence 55555444 665555433
No 310
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.91 E-value=0.00023 Score=75.98 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=74.5
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeecccc-----
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI----- 605 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l----- 605 (836)
+.|+.-+++.+-..+...+..+ . .+.|-.+=|+|++||||.++++.||+.+ ..++|..-.+..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------N-PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------C-CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 5677666666666665433322 2 2233567899999999999999999987 234433211111
Q ss_pred --chhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC
Q 003253 606 --TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 683 (836)
Q Consensus 606 --~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~ 683 (836)
+..| .++.-..+-..+...+.++.++||+|.| . ..+-.++.-++.........+..+.++|.-+|.
T Consensus 157 ~~ie~Y---k~eL~~~v~~~v~~C~rslFIFDE~DKm-----p----~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 157 SKIEDY---KEELKNRVRGTVQACQRSLFIFDEVDKL-----P----PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred HHHHHH---HHHHHHHHHHHHHhcCCceEEechhhhc-----C----HhHHHHHhhhhccccccccccccceEEEEEcCC
Confidence 1111 1222344555666778899999999988 2 222233333333222222233466777777776
Q ss_pred C
Q 003253 684 P 684 (836)
Q Consensus 684 ~ 684 (836)
-
T Consensus 225 g 225 (344)
T KOG2170|consen 225 G 225 (344)
T ss_pred c
Confidence 3
No 311
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.91 E-value=0.00037 Score=79.24 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhh-ccCcchhhHHHHHHhcCCC-cEEEEeeeccCCCccccCCCCCcccccc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSI-AGNSDSYSTFKSRLEKLPD-KVIVIGSHTHTDNRKEKSHPGGLLFTKF 350 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l-~~~~~~~~~l~~~l~~l~g-~v~vIgs~~~~d~~~~~~~~~~~~~~~~ 350 (836)
..+++.+.+.+.+ +..++||+|||+|.+. ....+....+...++.+.+ +|.+||..|..+.
T Consensus 123 ~~~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~--------------- 185 (394)
T PRK00411 123 DELFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTF--------------- 185 (394)
T ss_pred HHHHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcch---------------
Confidence 4556667776654 2568999999999976 2233444444444555555 7888888886641
Q ss_pred CCchhhhccccCCCccccccccCCCchhHHHHHhhhC-CceEEecCCChHHHHHHHHHhhH
Q 003253 351 GSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLF-PNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 351 ~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F-~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
.+ ..+..+..+| +..|.+++++.++...||+..+.
T Consensus 186 -------~~------------------~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 186 -------LY------------------ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred -------hh------------------hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 11 1122333344 56899999999999999997663
No 312
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.90 E-value=0.00046 Score=77.23 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=55.6
Q ss_pred CeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 003253 291 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 370 (836)
Q Consensus 291 p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~ 370 (836)
.-||+|||+|.+ +.+..+.+...|+..++++++|..++.++
T Consensus 118 ~~vviidea~~l---~~~~~~~Ll~~le~~~~~~~lIl~~~~~~------------------------------------ 158 (355)
T TIGR02397 118 YKVYIIDEVHML---SKSAFNALLKTLEEPPEHVVFILATTEPH------------------------------------ 158 (355)
T ss_pred ceEEEEeChhhc---CHHHHHHHHHHHhCCccceeEEEEeCCHH------------------------------------
Confidence 349999999984 23456677778887778888777776543
Q ss_pred ccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 371 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 371 ~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++.+.|.+|+ ..+++..|+.++...+++..+.+
T Consensus 159 -------~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 159 -------KIPATILSRC-QRFDFKRIPLEDIVERLKKILDK 191 (355)
T ss_pred -------HHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHH
Confidence 4456788888 68999999999999888866643
No 313
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.90 E-value=9e-05 Score=84.81 Aligned_cols=78 Identities=23% Similarity=0.264 Sum_probs=52.9
Q ss_pred eEEEEcCchhhhcc---CcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 292 FILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 292 ~Ilfi~ei~~~l~~---~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
-+|+|||++.+.+. ..++++.+....+. +..+||+++..+.. ++
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~--~~~iiits~~~p~~----------------------l~--------- 247 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHEN--GKQIVLTSDRPPKE----------------------LP--------- 247 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHC--CCCEEEecCCCHHH----------------------Hh---------
Confidence 48999999974432 23466666555443 55677777655431 11
Q ss_pred ccccCCCchhHHHHHhhhCCc--eEEecCCChHHHHHHHHHhhHh
Q 003253 369 LHDRGKEIPKATKLLTKLFPN--KVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~--~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
.+++.+..||.. .++|.+|+.++|..||+.....
T Consensus 248 ---------~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 248 ---------GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---------hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 245567778854 7999999999999999976644
No 314
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00032 Score=86.35 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=60.2
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
..-|+||||+|.+ +.+..|.|.+.|+..+.++++|..+|..+
T Consensus 120 ~~KV~IIDEad~l---t~~a~NaLLK~LEEpP~~~~fIl~tt~~~----------------------------------- 161 (824)
T PRK07764 120 RYKIFIIDEAHMV---TPQGFNALLKIVEEPPEHLKFIFATTEPD----------------------------------- 161 (824)
T ss_pred CceEEEEechhhc---CHHHHHHHHHHHhCCCCCeEEEEEeCChh-----------------------------------
Confidence 4459999999984 35778889999999999999999887665
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++-..|.+|. ..++|..+..++-.+.|+..+.+
T Consensus 162 --------kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 162 --------KVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred --------hhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 4556688887 79999999998888888765543
No 315
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00035 Score=80.46 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=58.9
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
...-|++|||+|.+ +.+..+.|...|+.-++++++|.+||...
T Consensus 120 g~~KV~IIDEah~L---s~~A~NALLKtLEEPp~~viFILaTte~~---------------------------------- 162 (484)
T PRK14956 120 GKYKVYIIDEVHML---TDQSFNALLKTLEEPPAHIVFILATTEFH---------------------------------- 162 (484)
T ss_pred CCCEEEEEechhhc---CHHHHHHHHHHhhcCCCceEEEeecCChh----------------------------------
Confidence 45679999999984 45677888888888889999999999764
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++...|..|. +.+.+..+..++-.+.++..+.
T Consensus 163 ---------kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~ 194 (484)
T PRK14956 163 ---------KIPETILSRC-QDFIFKKVPLSVLQDYSEKLCK 194 (484)
T ss_pred ---------hccHHHHhhh-heeeecCCCHHHHHHHHHHHHH
Confidence 4456688888 7889998888877777775543
No 316
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.85 E-value=0.00026 Score=87.13 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=30.6
Q ss_pred CCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 64 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 64 ~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
..+.|+|.||||+ .++.|+|++|+.++-++.-++
T Consensus 348 ~g~~i~l~GppG~--GKTtl~~~ia~~l~~~~~~i~ 381 (784)
T PRK10787 348 KGPILCLVGPPGV--GKTSLGQSIAKATGRKYVRMA 381 (784)
T ss_pred CCceEEEECCCCC--CHHHHHHHHHHHhCCCEEEEE
Confidence 3467999999999 899999999999999988877
No 317
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00038 Score=76.15 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=82.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCC-------------cceeeccccchhcccccHHHHHHHHHHHHh-----cCC
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAGAN-------------FINISMSSITSKWFGEGEKYVKAVFSLASK-----IAP 629 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~-----~~p 629 (836)
-.+..||+|+.|.||+.+|+++++.+-+. ++.++. .+.. -.-..++.+.+.+.. ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~--i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKD--LSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCc--CCHHHHHHHHHHhccCCcccCCc
Confidence 34678999999999999999999987221 111210 0110 111234444443322 245
Q ss_pred ceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHH
Q 003253 630 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNR 709 (836)
Q Consensus 630 sIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR 709 (836)
.|++||++|.+ + ....+.++..++. ++..+++|.+|+.+..+-+.+++|+ .++.|.+|+.++.
T Consensus 92 KvvII~~~e~m-----~-------~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l 154 (299)
T PRK07132 92 KILIIKNIEKT-----S-------NSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKI 154 (299)
T ss_pred eEEEEeccccc-----C-------HHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHH
Confidence 79999999987 2 1233445555554 3355677777778889999999999 6899999998888
Q ss_pred HHHHHH
Q 003253 710 AKILQV 715 (836)
Q Consensus 710 ~~Il~~ 715 (836)
.+.+..
T Consensus 155 ~~~l~~ 160 (299)
T PRK07132 155 LAKLLS 160 (299)
T ss_pred HHHHHH
Confidence 776654
No 318
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00016 Score=85.48 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=60.1
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
..--|++|||+|.+ +....|.|.+.|+.-++++++|.+||.++
T Consensus 123 gr~KViIIDEah~L---s~~AaNALLKTLEEPP~~v~FILaTtep~---------------------------------- 165 (700)
T PRK12323 123 GRFKVYMIDEVHML---TNHAFNAMLKTLEEPPEHVKFILATTDPQ---------------------------------- 165 (700)
T ss_pred CCceEEEEEChHhc---CHHHHHHHHHhhccCCCCceEEEEeCChH----------------------------------
Confidence 34569999999984 44567888889998889999999999775
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++...|..|. ..+.+..++.++-.+.|+..+.
T Consensus 166 ---------kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~ 197 (700)
T PRK12323 166 ---------KIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILG 197 (700)
T ss_pred ---------hhhhHHHHHH-HhcccCCCChHHHHHHHHHHHH
Confidence 4556688888 8999999999988888876554
No 319
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00021 Score=75.94 Aligned_cols=121 Identities=8% Similarity=0.041 Sum_probs=76.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeec--------------cccchhcc-c--ccHHHHHHHHHHHH----
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM--------------SSITSKWF-G--EGEKYVKAVFSLAS---- 625 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~--------------s~l~s~~~-g--~~e~~i~~lf~~A~---- 625 (836)
.+++.+||+||.|+||..+|.++|..+-+.--.-.| +++.--+. + -....++.+.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 456899999999999999999999887322100011 12111000 0 11223344433322
Q ss_pred h-cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCC
Q 003253 626 K-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLP 704 (836)
Q Consensus 626 ~-~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P 704 (836)
. ....|++|+++|.| + ....+.|+..++. ++.++++|.+|+.++.+.+.+++|+ ..+.++.+
T Consensus 85 e~~~~KV~II~~ae~m-----~-------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL-----N-------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhh-----C-------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 1 23579999999988 2 2334555555544 4567889999999999999999998 45666665
No 320
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.82 E-value=7.2e-05 Score=80.78 Aligned_cols=160 Identities=19% Similarity=0.319 Sum_probs=94.6
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHH-H--HhCCCcceeecccc-------
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVA-T--EAGANFINISMSSI------- 605 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA-~--~l~~~~i~v~~s~l------- 605 (836)
+.|..+-.+.+.+++..... ....+++++.||.|+|||++..... . +.|-+|+.+.....
T Consensus 26 l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred eeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 45666666666665542111 2234689999999999999765443 3 45666655443211
Q ss_pred --------------chhcccccHHHHHHHHHHHHhc-----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcC
Q 003253 606 --------------TSKWFGEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 666 (836)
Q Consensus 606 --------------~s~~~g~~e~~i~~lf~~A~~~-----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~ 666 (836)
..+.+|.....+..+.....+. .+.|.++||||.+++.. .++++..+-.
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlfD 163 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLFD 163 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHHH
Confidence 1123344444444444443322 22345568999885432 2334443333
Q ss_pred CcccCcccEEEEeccCCCCC---CcHHHHhhcccc-ccC-CCCCHHHHHHHHHHHH
Q 003253 667 LRTKDTERILVLAATNRPFD---LDEAVIRRLPRR-LMV-NLPDAPNRAKILQVIL 717 (836)
Q Consensus 667 ~~~~~~~~vlVIaTTn~~~~---Ld~~l~rRf~~~-I~v-~~P~~~eR~~Il~~~l 717 (836)
+......++.||+.|.+.+. |...+.+||.++ |.+ +..+.++-..+++..+
T Consensus 164 isqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 164 ISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 33334578999999988665 556888899876 444 4446888888888877
No 321
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.81 E-value=0.00045 Score=76.66 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=41.4
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhC-----CeEEEEe
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG-----AKLLIFD 99 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~-----~~ll~~d 99 (836)
+|++|-+. ++.+..|..++- . ...+.+||+||+|| ++++||+|+|++.. .+++.++
T Consensus 13 ~~~~~~g~--~~~~~~L~~~~~----~-----------~~~~~lll~Gp~Gt--GKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 13 LLEDILGQ--DEVVERLSRAVD----S-----------PNLPHLLVQGPPGS--GKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred cHHHhcCC--HHHHHHHHHHHh----C-----------CCCceEEEECCCCC--CHHHHHHHHHHHhcCcccccceEEec
Confidence 57777664 777777766542 1 11235999999999 99999999999874 3344555
Q ss_pred cccc
Q 003253 100 SHSL 103 (836)
Q Consensus 100 ~~~~ 103 (836)
.+++
T Consensus 74 ~~~~ 77 (337)
T PRK12402 74 VADF 77 (337)
T ss_pred hhhh
Confidence 4333
No 322
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00052 Score=81.59 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=58.2
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
...-|++|||+|.+ +.+..+.|...|+..+..+++|.+|+.++
T Consensus 118 ~~~kViIIDE~~~L---t~~a~naLLKtLEepp~~~ifIlatt~~~---------------------------------- 160 (559)
T PRK05563 118 AKYKVYIIDEVHML---STGAFNALLKTLEEPPAHVIFILATTEPH---------------------------------- 160 (559)
T ss_pred CCeEEEEEECcccC---CHHHHHHHHHHhcCCCCCeEEEEEeCChh----------------------------------
Confidence 34569999999974 34567788889998888999998888664
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++...|.+|. ..+++..|+.++-...++..+.
T Consensus 161 ---------ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~ 192 (559)
T PRK05563 161 ---------KIPATILSRC-QRFDFKRISVEDIVERLKYILD 192 (559)
T ss_pred ---------hCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHH
Confidence 3445677777 6899999999888888876554
No 323
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.79 E-value=1.9e-06 Score=95.70 Aligned_cols=175 Identities=25% Similarity=0.346 Sum_probs=85.1
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeecc-----ccchhc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS-----SITSKW 609 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s-----~l~s~~ 609 (836)
.|.|++.+|..+.-.+........ ..+...+..-++||.|.||+|||.|.+.+++.....+ +++.. .+....
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~--~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKND--PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCC--CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred cCcCcHHHHHHHHHHHHhcccccc--ccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 467888877665433322111100 0001112335899999999999999998875543222 11111 111000
Q ss_pred c---cccHHHH-HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhc--CCcccCcccEEEEeccCC
Q 003253 610 F---GEGEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDTERILVLAATNR 683 (836)
Q Consensus 610 ~---g~~e~~i-~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld--~~~~~~~~~vlVIaTTn~ 683 (836)
. ...+..+ ...+-.|.+ +|++|||+|.+ .......+..++++-...+. |+...-+.+.-|+|++|.
T Consensus 102 ~~d~~~~~~~leaGalvlad~---GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 102 SRDPVTGEWVLEAGALVLADG---GICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp CCCGGTSSECEEE-HHHHCTT---SEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--
T ss_pred ccccccceeEEeCCchhcccC---ceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhh
Confidence 0 0011111 123344444 89999999988 33333443333333211121 222223467899999997
Q ss_pred CC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHhhC
Q 003253 684 PF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILAKE 720 (836)
Q Consensus 684 ~~-------------~Ld~~l~rRf~~~I~v-~~P~~~eR~~Il~~~l~~~ 720 (836)
.. .+++.+++|||.++.+ +.|+.+.-..+.++++...
T Consensus 174 ~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 174 KFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 54 4778999999987665 6788777778888777654
No 324
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00068 Score=80.50 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=56.1
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
...-||+|||+|.+ ..+..+.|...|+.-++++++|.++|...
T Consensus 118 g~~kVIIIDEad~L---t~~a~naLLk~LEEP~~~~ifILaTt~~~---------------------------------- 160 (624)
T PRK14959 118 GRYKVFIIDEAHML---TREAFNALLKTLEEPPARVTFVLATTEPH---------------------------------- 160 (624)
T ss_pred CCceEEEEEChHhC---CHHHHHHHHHHhhccCCCEEEEEecCChh----------------------------------
Confidence 34569999999984 23456777888888778899999888664
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++...|..|. ..|++..++.++-.++|+..+.
T Consensus 161 ---------kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~ 192 (624)
T PRK14959 161 ---------KFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLG 192 (624)
T ss_pred ---------hhhHHHHhhh-hccccCCCCHHHHHHHHHHHHH
Confidence 3344566676 6889999999988888885553
No 325
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.78 E-value=0.00026 Score=76.65 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=83.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH--hCCCc---ceeeccc----------cchhc---------ccccHHHHHHHHH
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATE--AGANF---INISMSS----------ITSKW---------FGEGEKYVKAVFS 622 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~--l~~~~---i~v~~s~----------l~s~~---------~g~~e~~i~~lf~ 622 (836)
...+-|.|+|++|+|||+||..+++. ....| +.++... +...+ ....+.....+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34467999999999999999999987 43332 2233221 11010 0111223333433
Q ss_pred HHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCC
Q 003253 623 LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVN 702 (836)
Q Consensus 623 ~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~ 702 (836)
.. +..+++|+||+++... .+..+...+.. ...+..||.||...... ...... ...+.++
T Consensus 97 ~L-~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~----~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~ 155 (287)
T PF00931_consen 97 LL-KDKRCLLVLDDVWDEE--------------DLEELREPLPS----FSSGSKILVTTRDRSVA-GSLGGT-DKVIELE 155 (287)
T ss_dssp HH-CCTSEEEEEEEE-SHH--------------HH-------HC----HHSS-EEEEEESCGGGG-TTHHSC-EEEEECS
T ss_pred hh-ccccceeeeeeecccc--------------ccccccccccc----ccccccccccccccccc-cccccc-ccccccc
Confidence 33 3458999999998551 11222221111 11234566677653321 111111 3578899
Q ss_pred CCCHHHHHHHHHHHHhhCC----CCCcccHHHHHHHcCCCcHHHHHHH
Q 003253 703 LPDAPNRAKILQVILAKED----LSPDVDFDAIANMTDGYSGSDLKNL 746 (836)
Q Consensus 703 ~P~~~eR~~Il~~~l~~~~----l~~d~dl~~LA~~t~G~sg~DL~~L 746 (836)
..+.++-.++|........ ...+.....|++.+.|. |-.|..+
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 9999999999999875443 11233467888888774 4444433
No 326
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.78 E-value=0.00033 Score=82.84 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=42.7
Q ss_pred ccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHh----------CC
Q 003253 24 ESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYF----------GA 93 (836)
Q Consensus 24 ~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~----------~~ 93 (836)
.+|+++... ++....|..+.+ .+.++.|||+||+|| +++++||+++++. ++
T Consensus 62 ~~f~~iiGq--s~~i~~l~~al~---------------~~~~~~vLi~Ge~Gt--GKt~lAr~i~~~~~~~~~s~~~~~~ 122 (531)
T TIGR02902 62 KSFDEIIGQ--EEGIKALKAALC---------------GPNPQHVIIYGPPGV--GKTAAARLVLEEAKKNPASPFKEGA 122 (531)
T ss_pred CCHHHeeCc--HHHHHHHHHHHh---------------CCCCceEEEECCCCC--CHHHHHHHHHHHhhhccCCCcCCCC
Confidence 567777665 666666654421 223567999999999 9999999998752 47
Q ss_pred eEEEEecc
Q 003253 94 KLLIFDSH 101 (836)
Q Consensus 94 ~ll~~d~~ 101 (836)
+|+.+|.+
T Consensus 123 ~fi~id~~ 130 (531)
T TIGR02902 123 AFVEIDAT 130 (531)
T ss_pred CEEEEccc
Confidence 78888864
No 327
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00035 Score=82.85 Aligned_cols=75 Identities=12% Similarity=0.172 Sum_probs=56.2
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
..-|++|||+|. |. .+..+.|...|+..++.+.+|.+++.+.
T Consensus 118 k~KV~IIDEVh~-LS--~~A~NALLKtLEEPP~~v~FILaTtd~~----------------------------------- 159 (702)
T PRK14960 118 RFKVYLIDEVHM-LS--THSFNALLKTLEEPPEHVKFLFATTDPQ----------------------------------- 159 (702)
T ss_pred CcEEEEEechHh-cC--HHHHHHHHHHHhcCCCCcEEEEEECChH-----------------------------------
Confidence 445999999997 43 3467788889998888888888887553
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++...|.+|. ..+++..++.++-.+.++..+.+
T Consensus 160 --------kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~k 192 (702)
T PRK14960 160 --------KLPITVISRC-LQFTLRPLAVDEITKHLGAILEK 192 (702)
T ss_pred --------hhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHH
Confidence 2234566777 79999999999888888765543
No 328
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00029 Score=84.37 Aligned_cols=75 Identities=11% Similarity=0.135 Sum_probs=56.6
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
.--|++|||+|.+ +.+..|.|.+.|+.-+.++.+|.++|...
T Consensus 119 r~KVIIIDEah~L---T~~A~NALLKtLEEPP~~v~FILaTtd~~----------------------------------- 160 (830)
T PRK07003 119 RFKVYMIDEVHML---TNHAFNAMLKTLEEPPPHVKFILATTDPQ----------------------------------- 160 (830)
T ss_pred CceEEEEeChhhC---CHHHHHHHHHHHHhcCCCeEEEEEECChh-----------------------------------
Confidence 3459999999974 33567778788988888899888888764
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++-..|..|. ..|.|..+..++-.+.|+..+.+
T Consensus 161 --------KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~ 193 (830)
T PRK07003 161 --------KIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGE 193 (830)
T ss_pred --------hccchhhhhe-EEEecCCcCHHHHHHHHHHHHHH
Confidence 3344577777 78999998888888888765543
No 329
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.74 E-value=7.2e-05 Score=85.89 Aligned_cols=166 Identities=26% Similarity=0.348 Sum_probs=93.4
Q ss_pred HHHHHHhcCcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 514 EFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 514 d~~~~l~~~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.+..+++..+.| .|.|+..+|..+--.+.+....-..- +.+ .+.--++||+|.|||||+.+.+.+++..
T Consensus 438 ~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~kn~~~-khk-vRGDinvLL~GDPGTaKSQFLKY~eK~s 506 (854)
T KOG0477|consen 438 PIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPKNPGG-KHK-VRGDINVLLLGDPGTAKSQFLKYAEKTS 506 (854)
T ss_pred cHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCccCCCC-Cce-eccceeEEEecCCCccHHHHHHHHHhcC
Confidence 344446666655 58999999999887776533221100 001 1112469999999999999999999877
Q ss_pred CCCccee---------eccc----cchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHH
Q 003253 594 GANFINI---------SMSS----ITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEF 660 (836)
Q Consensus 594 ~~~~i~v---------~~s~----l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~l 660 (836)
...++.- .+.. +...|.-+ ...+-.|.+ +|.+|||+|.|-... ...-++++.+ |.+
T Consensus 507 ~RAV~tTGqGASavGLTa~v~KdPvtrEWTLE-----aGALVLADk---GvClIDEFDKMndqD-RtSIHEAMEQ--QSI 575 (854)
T KOG0477|consen 507 PRAVFTTGQGASAVGLTAYVRKDPVTREWTLE-----AGALVLADK---GVCLIDEFDKMNDQD-RTSIHEAMEQ--QSI 575 (854)
T ss_pred cceeEeccCCccccceeEEEeeCCccceeeec-----cCeEEEccC---ceEEeehhhhhcccc-cchHHHHHHh--cch
Confidence 5443322 2111 11122111 112223344 899999999994322 1222333221 111
Q ss_pred HHHhcCCcccCcccEEEEeccCCCC-------------CCcHHHHhhccccccC
Q 003253 661 MVNWDGLRTKDTERILVLAATNRPF-------------DLDEAVIRRLPRRLMV 701 (836)
Q Consensus 661 l~~ld~~~~~~~~~vlVIaTTn~~~-------------~Ld~~l~rRf~~~I~v 701 (836)
-..-.|+...-..++.||||+|... .|.+.+++||+....+
T Consensus 576 SISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 576 SISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred hhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 1111223333346789999999821 4667899999754443
No 330
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00095 Score=78.28 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=55.6
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
..+-||+|||+|.+ +.+..+.|...|+.-+.++++|.+++.+.
T Consensus 115 ~~~kVVIIDEad~l---s~~a~naLLk~LEep~~~t~~Il~t~~~~---------------------------------- 157 (504)
T PRK14963 115 GGRKVYILDEAHMM---SKSAFNALLKTLEEPPEHVIFILATTEPE---------------------------------- 157 (504)
T ss_pred CCCeEEEEECcccc---CHHHHHHHHHHHHhCCCCEEEEEEcCChh----------------------------------
Confidence 35669999999963 34556777778887777777777777553
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++...|.+|. ..+++..|+.++-...++..+.+
T Consensus 158 ---------kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~ 190 (504)
T PRK14963 158 ---------KMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEA 190 (504)
T ss_pred ---------hCChHHhcce-EEEEecCCCHHHHHHHHHHHHHH
Confidence 3345566677 68999999999988888866543
No 331
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00051 Score=78.06 Aligned_cols=61 Identities=23% Similarity=0.217 Sum_probs=46.0
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 94 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ 94 (836)
.|+++-+- |+.+..|..++-....+ +..++.. .+..+||+||+|+ ++++||++||+.+...
T Consensus 3 ~f~~IiGq--~~~~~~L~~~i~~~~~~--~~~~~~~---l~ha~Lf~Gp~G~--GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 3 VWDDLVGQ--EAVVAELRAAARAARAD--VAAAGSG---MTHAWLFTGPPGS--GRSVAARAFAAALQCT 63 (394)
T ss_pred hhhhccCh--HHHHHHHHHHHHhcccc--ccccCCC---CCeEEEEECCCCC--cHHHHHHHHHHHhCCC
Confidence 37777776 99999999988765543 2223332 4788999999998 9999999999986543
No 332
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.00038 Score=68.18 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=23.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
...+.++|+||+|||+++.-+|..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3679999999999999999999887
No 333
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.70 E-value=7.9e-05 Score=68.95 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 334
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.0015 Score=75.49 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=54.1
Q ss_pred CCeEEEEcCchhhhcc---CcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcc
Q 003253 290 CPFILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSF 366 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~---~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~ 366 (836)
++-+|+|||++.+++. +.++++.+....+. |..+||++...+.. +
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~--~k~iIitsd~~p~~----------------------l-------- 241 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDS--GKQIVICSDREPQK----------------------L-------- 241 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHc--CCeEEEECCCCHHH----------------------H--------
Confidence 5669999999986542 24677766555543 56677776544421 1
Q ss_pred ccccccCCCchhHHHHHhhhCC--ceEEecCCChHHHHHHHHHhhH
Q 003253 367 GRLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 367 r~~~~~~~~~~~~~~~l~~~F~--~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
..+.+.+..||. ..+.|.+|+.+.|..|++....
T Consensus 242 ----------~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 242 ----------SEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred ----------HHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 134556777774 4788999999999999996654
No 335
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.0011 Score=76.87 Aligned_cols=75 Identities=13% Similarity=0.173 Sum_probs=57.8
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
...-||+|||+|.+- .+..+.|...|+..++.+++|.+++...
T Consensus 120 ~~~kvvIIdead~lt---~~~~n~LLk~lEep~~~~~~Il~t~~~~---------------------------------- 162 (451)
T PRK06305 120 SRYKIYIIDEVHMLT---KEAFNSLLKTLEEPPQHVKFFLATTEIH---------------------------------- 162 (451)
T ss_pred CCCEEEEEecHHhhC---HHHHHHHHHHhhcCCCCceEEEEeCChH----------------------------------
Confidence 456799999999842 3456778888888888999998886543
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++.+.|.+|+ ..+++..|+.++-.+.++..+.
T Consensus 163 ---------kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~ 194 (451)
T PRK06305 163 ---------KIPGTILSRC-QKMHLKRIPEETIIDKLALIAK 194 (451)
T ss_pred ---------hcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 4556788888 6899999999988887775543
No 336
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.0015 Score=77.01 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=57.1
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
...-|++|||+|. + +.+..+.|...|+..++.+++|.+||...
T Consensus 118 g~~kViIIDEa~~-l--s~~a~naLLK~LEepp~~v~fIL~Ttd~~---------------------------------- 160 (546)
T PRK14957 118 GRYKVYLIDEVHM-L--SKQSFNALLKTLEEPPEYVKFILATTDYH---------------------------------- 160 (546)
T ss_pred CCcEEEEEechhh-c--cHHHHHHHHHHHhcCCCCceEEEEECChh----------------------------------
Confidence 3456999999998 3 34567788889999889999999987542
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++-..|..|. ..+++..++.++-.+.++..+.
T Consensus 161 ---------kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~ 192 (546)
T PRK14957 161 ---------KIPVTILSRC-IQLHLKHISQADIKDQLKIILA 192 (546)
T ss_pred ---------hhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHH
Confidence 2334477777 8999999999987777775543
No 337
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00086 Score=80.84 Aligned_cols=74 Identities=14% Similarity=0.250 Sum_probs=58.9
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
..-|++|||+|. |. .+..+.|...|+..++.+++|.+|+.++
T Consensus 118 ~~KV~IIDEa~~-LT--~~A~NALLKtLEEPP~~tifILaTte~~----------------------------------- 159 (725)
T PRK07133 118 KYKIYIIDEVHM-LS--KSAFNALLKTLEEPPKHVIFILATTEVH----------------------------------- 159 (725)
T ss_pred CCEEEEEEChhh-CC--HHHHHHHHHHhhcCCCceEEEEEcCChh-----------------------------------
Confidence 445999999997 43 3577888889999889999999998664
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++...|.+|. ..+++..|..++-...|+..+.
T Consensus 160 --------KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~ 191 (725)
T PRK07133 160 --------KIPLTILSRV-QRFNFRRISEDEIVSRLEFILE 191 (725)
T ss_pred --------hhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHH
Confidence 4456688888 6999999999988888885553
No 338
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0012 Score=80.55 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=56.9
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
.--|++|||+|.+ +.+..+.|.+.|+.-++++.+|++||...
T Consensus 119 k~KViIIDEAh~L---T~eAqNALLKtLEEPP~~vrFILaTTe~~----------------------------------- 160 (944)
T PRK14949 119 RFKVYLIDEVHML---SRSSFNALLKTLEEPPEHVKFLLATTDPQ----------------------------------- 160 (944)
T ss_pred CcEEEEEechHhc---CHHHHHHHHHHHhccCCCeEEEEECCCch-----------------------------------
Confidence 3459999999984 56778888899999899999999988764
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++...|..|. ..+.+..+..++-...|+..+.
T Consensus 161 --------kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~ 192 (944)
T PRK14949 161 --------KLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILT 192 (944)
T ss_pred --------hchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHH
Confidence 2334455555 7888998888888877775543
No 339
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.0017 Score=77.16 Aligned_cols=73 Identities=12% Similarity=0.199 Sum_probs=59.3
Q ss_pred eEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 003253 292 FILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 371 (836)
Q Consensus 292 ~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~ 371 (836)
=|++|||+|.+ +.+..|.|...|+..++++++|.+||.++
T Consensus 120 KVvIIDEah~L---t~~A~NALLK~LEEpp~~~~fIL~tte~~------------------------------------- 159 (584)
T PRK14952 120 RIFIVDEAHMV---TTAGFNALLKIVEEPPEHLIFIFATTEPE------------------------------------- 159 (584)
T ss_pred eEEEEECCCcC---CHHHHHHHHHHHhcCCCCeEEEEEeCChH-------------------------------------
Confidence 39999999973 35688889999999999999999998764
Q ss_pred cCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 372 RGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 372 ~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++...|..|- ..++|..++.++-.+.++..+.+
T Consensus 160 ------kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~ 192 (584)
T PRK14952 160 ------KVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQ 192 (584)
T ss_pred ------hhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHH
Confidence 5567788885 79999999998887777755543
No 340
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.65 E-value=9.1e-05 Score=78.21 Aligned_cols=136 Identities=22% Similarity=0.285 Sum_probs=77.1
Q ss_pred ceEEEEcCCCChHHHHHHHHH------HHhCCCcceeeccccchhccc-ccHHHHHHHHHHH--------HhcCCceEEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSKWFG-EGEKYVKAVFSLA--------SKIAPSVIFV 634 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA------~~l~~~~i~v~~s~l~s~~~g-~~e~~i~~lf~~A--------~~~~psIL~I 634 (836)
..+||.||+|.||+.||+.|- +++..+|+.++|..+.+...- .--+.++..|.-| +....+++|+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 359999999999999999884 345789999999987543110 0011233334333 2234579999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC-------CCCCcHHHHhhccccccCCCCCHH
Q 003253 635 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-------PFDLDEAVIRRLPRRLMVNLPDAP 707 (836)
Q Consensus 635 DEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~-------~~~Ld~~l~rRf~~~I~v~~P~~~ 707 (836)
|||..|. ..++..+.+.+.+--..--|....-...+-+|+-|-+ ...+.+.+..|+ ....|.+|...
T Consensus 289 deigelg-----adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lpgl~ 362 (531)
T COG4650 289 DEIGELG-----ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLPGLR 362 (531)
T ss_pred HhhhhcC-----ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeeccccc
Confidence 9999883 3344444333333211111111111233445554432 123445555566 45677788777
Q ss_pred HHHH
Q 003253 708 NRAK 711 (836)
Q Consensus 708 eR~~ 711 (836)
+|.+
T Consensus 363 qr~e 366 (531)
T COG4650 363 QRQE 366 (531)
T ss_pred cCcc
Confidence 7655
No 341
>PLN03025 replication factor C subunit; Provisional
Probab=97.63 E-value=0.00056 Score=75.78 Aligned_cols=75 Identities=9% Similarity=0.133 Sum_probs=51.3
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
.+-||+|||+|.+-. +.-+.|...++..++...+|-.+|...
T Consensus 99 ~~kviiiDE~d~lt~---~aq~aL~~~lE~~~~~t~~il~~n~~~----------------------------------- 140 (319)
T PLN03025 99 RHKIVILDEADSMTS---GAQQALRRTMEIYSNTTRFALACNTSS----------------------------------- 140 (319)
T ss_pred CeEEEEEechhhcCH---HHHHHHHHHHhcccCCceEEEEeCCcc-----------------------------------
Confidence 456999999998433 234667777777666555555555442
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++.++|.+|. ..+++..|++++....++....+
T Consensus 141 --------~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~ 173 (319)
T PLN03025 141 --------KIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEA 173 (319)
T ss_pred --------ccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHH
Confidence 2344566676 68999999999999988865543
No 342
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.60 E-value=0.00043 Score=78.94 Aligned_cols=27 Identities=30% Similarity=0.557 Sum_probs=24.9
Q ss_pred CCCceeeecCCCchHHHHHHHHHHHhHhC
Q 003253 64 VNPRILLSGPAGSEIYQEMLAKALAHYFG 92 (836)
Q Consensus 64 ~~~~iLl~gp~g~e~y~~~l~kala~~~~ 92 (836)
+.+.|+|+||||| ++++|||+||+.+.
T Consensus 193 ~~~~iil~GppGt--GKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGV--GKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCC--CHHHHHHHHHHHhc
Confidence 5789999999999 99999999999875
No 343
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.59 E-value=8.1e-05 Score=91.22 Aligned_cols=162 Identities=22% Similarity=0.275 Sum_probs=104.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhccc-----c--cHHHHHHHH---HH--HHhcCCceEEEccch
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG-----E--GEKYVKAVF---SL--ASKIAPSVIFVDEVD 638 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g-----~--~e~~i~~lf---~~--A~~~~psIL~IDEID 638 (836)
.+|++||||+|||+.|.++|.++|+.++.++.++..++... . ....+...| .. .......||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 36999999999999999999999999999999876543221 1 111233333 00 011123499999999
Q ss_pred hhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHh
Q 003253 639 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA 718 (836)
Q Consensus 639 ~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~ 718 (836)
-+++ .+ +..+..+...... ..+-+|+++|.........+.|....++|+.|+...+..-+..++.
T Consensus 439 ~~~~-~d--------Rg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~ 503 (871)
T KOG1968|consen 439 GMFG-ED--------RGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICK 503 (871)
T ss_pred cccc-hh--------hhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhc
Confidence 8865 21 2222333222221 2345677888877666545555445699999999999998888887
Q ss_pred hCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 719 KEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 719 ~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
...+. .+..++.+.+.+ ++||++.+..-.
T Consensus 504 se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 504 SEGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred ccceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 66554 445567777765 567766654433
No 344
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00077 Score=80.48 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=55.5
Q ss_pred eEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 003253 292 FILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 371 (836)
Q Consensus 292 ~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~ 371 (836)
=|++|||+|. |. .+..|.|.+.|+..++++++|.+||.+.
T Consensus 121 KVvIIdev~~-Lt--~~a~naLLk~LEepp~~~~fIl~t~~~~------------------------------------- 160 (576)
T PRK14965 121 KIFIIDEVHM-LS--TNAFNALLKTLEEPPPHVKFIFATTEPH------------------------------------- 160 (576)
T ss_pred eEEEEEChhh-CC--HHHHHHHHHHHHcCCCCeEEEEEeCChh-------------------------------------
Confidence 3899999997 33 4567889999999889999999888664
Q ss_pred cCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 372 RGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 372 ~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++-+.|.+|. ..+++..++.++-...++..+.
T Consensus 161 ------kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~ 192 (576)
T PRK14965 161 ------KVPITILSRC-QRFDFRRIPLQKIVDRLRYIAD 192 (576)
T ss_pred ------hhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHH
Confidence 4556677777 6888988888777766665443
No 345
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.58 E-value=0.0012 Score=79.10 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=41.0
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 94 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ 94 (836)
+|+++-+. ++.+..|..+.-. . ..+..+||+||+|+ +++++|++||+.+..+
T Consensus 14 tFddIIGQ--e~vv~~L~~ai~~----~----------rl~Ha~Lf~GP~Gv--GKTTlAriLAk~LnC~ 65 (709)
T PRK08691 14 TFADLVGQ--EHVVKALQNALDE----G----------RLHHAYLLTGTRGV--GKTTIARILAKSLNCE 65 (709)
T ss_pred CHHHHcCc--HHHHHHHHHHHHc----C----------CCCeEEEEECCCCC--cHHHHHHHHHHHhccc
Confidence 68887777 8888888776432 1 22456999999999 9999999999998764
No 346
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.58 E-value=0.00029 Score=72.90 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=50.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh--------cc---------------cccHHHHHHH
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--------WF---------------GEGEKYVKAV 620 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~--------~~---------------g~~e~~i~~l 620 (836)
.+..-++|+||||+|||+++..++... +..++.++...+... +. .+....+..+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 89 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKT 89 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHH
Confidence 334669999999999999999988654 567777777541100 00 0001123444
Q ss_pred HHHHHhcCCceEEEccchhhhc
Q 003253 621 FSLASKIAPSVIFVDEVDSMLG 642 (836)
Q Consensus 621 f~~A~~~~psIL~IDEID~L~~ 642 (836)
...+.+..+.+|+||-|..++.
T Consensus 90 ~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 90 SKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHhhcCccEEEEeCcHHHhH
Confidence 4445555789999999998864
No 347
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.57 E-value=8.1e-05 Score=77.72 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=41.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc--c--------chhcccccHHHHHHHHHHHH--hcCCceEE
Q 003253 566 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--I--------TSKWFGEGEKYVKAVFSLAS--KIAPSVIF 633 (836)
Q Consensus 566 ~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~--l--------~s~~~g~~e~~i~~lf~~A~--~~~psIL~ 633 (836)
.+.+..+||||+||+|||++|+.++.. ..++..+.+. + ...-...+-..+...+..+. ...+.+|+
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 343466999999999999999999732 2222222211 0 00000111112222233332 23568999
Q ss_pred Eccchhhhc
Q 003253 634 VDEVDSMLG 642 (836)
Q Consensus 634 IDEID~L~~ 642 (836)
||.|+.+..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999998764
No 348
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.56 E-value=0.0015 Score=77.40 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=52.3
Q ss_pred CeEEEEcCchhhhc---cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 003253 291 PFILFMKDAEKSIA---GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 367 (836)
Q Consensus 291 p~Ilfi~ei~~~l~---~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r 367 (836)
+-+|+||||+.+.+ ...++++.|....+. +.-+||.|...+.. +
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~--gk~IIITSd~~P~e----------------------L--------- 424 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNA--NKQIVLSSDRPPKQ----------------------L--------- 424 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhc--CCCEEEecCCChHh----------------------h---------
Confidence 45899999997544 235677777665543 44455555443321 0
Q ss_pred cccccCCCchhHHHHHhhhCC--ceEEecCCChHHHHHHHHHhhHh
Q 003253 368 RLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~F~--~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
..+++.|..||. -.++|..|+.+.|..||+....+
T Consensus 425 ---------~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 425 ---------VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred ---------hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 023556888884 56699999999999999976644
No 349
>PRK06893 DNA replication initiation factor; Validated
Probab=97.55 E-value=0.00021 Score=75.38 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=49.5
Q ss_pred CeEEEEcCchhhhccC---cchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 003253 291 PFILFMKDAEKSIAGN---SDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 367 (836)
Q Consensus 291 p~Ilfi~ei~~~l~~~---~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r 367 (836)
.-+|+||||+.+.+.. ..+++.+....+. .+.++|+++++.+.. ++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illits~~~p~~----------------------l~-------- 140 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLISADCSPHA----------------------LS-------- 140 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEEeCCCChHH----------------------cc--------
Confidence 3499999999854321 2344444433332 235677888776642 11
Q ss_pred cccccCCCchhHHHHHhhhC--CceEEecCCChHHHHHHHHHhhH
Q 003253 368 RLHDRGKEIPKATKLLTKLF--PNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~F--~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
.....|..|+ ...+++..|+++.|.+|++....
T Consensus 141 ----------~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 141 ----------IKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred ----------ccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 0123355555 46899999999999999996653
No 350
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.55 E-value=0.00045 Score=84.04 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=53.5
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
...||||||||.+-.. .-+.|.+.++. |.|++||+|+....
T Consensus 109 ~~~IL~IDEIh~Ln~~---qQdaLL~~lE~--g~IiLI~aTTenp~---------------------------------- 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKA---QQDALLPWVEN--GTITLIGATTENPY---------------------------------- 149 (725)
T ss_pred CceEEEEeChhhCCHH---HHHHHHHHhcC--ceEEEEEecCCChH----------------------------------
Confidence 4569999999984322 22345556654 78999999986431
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
+++..++..|. ..+.+++++.++...+|+..+.
T Consensus 150 -------~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 150 -------FEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred -------hhhhhHhhccc-cceecCCCCHHHHHHHHHHHHH
Confidence 14556677665 6799999999999999997665
No 351
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0014 Score=77.58 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=57.4
Q ss_pred eEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 003253 292 FILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 371 (836)
Q Consensus 292 ~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~ 371 (836)
=|++|||+|.+ +.+..+.|...|+..++.+++|.+++.+.
T Consensus 121 KVIIIDEad~L---t~~A~NaLLKtLEEPp~~tvfIL~Tt~~~------------------------------------- 160 (605)
T PRK05896 121 KVYIIDEAHML---STSAWNALLKTLEEPPKHVVFIFATTEFQ------------------------------------- 160 (605)
T ss_pred EEEEEechHhC---CHHHHHHHHHHHHhCCCcEEEEEECCChH-------------------------------------
Confidence 38999999974 34567888889998888999998887653
Q ss_pred cCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 372 RGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 372 ~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++...|.+|+ ..+++..|+.++....++..+.
T Consensus 161 ------KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~ 192 (605)
T PRK05896 161 ------KIPLTIISRC-QRYNFKKLNNSELQELLKSIAK 192 (605)
T ss_pred ------hhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHH
Confidence 4566788888 6999999999988888885553
No 352
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.54 E-value=0.00095 Score=69.67 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=43.2
Q ss_pred ccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhC---CeEEEE
Q 003253 22 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG---AKLLIF 98 (836)
Q Consensus 22 ~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~---~~ll~~ 98 (836)
..-|||+|=.--++++...|...+. ....+.|||+||+|| +++.||+++|++.. .+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~~~lll~G~~G~--GKT~la~~~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA---------------GKGDRFLYLWGESGS--GKSHLLQAACAAAEERGKSAIYL 72 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh---------------cCCCCeEEEECCCCC--CHHHHHHHHHHHHHhcCCcEEEE
Confidence 3468888853345667776666542 123577999999999 99999999999863 444444
Q ss_pred ec
Q 003253 99 DS 100 (836)
Q Consensus 99 d~ 100 (836)
|.
T Consensus 73 ~~ 74 (226)
T TIGR03420 73 PL 74 (226)
T ss_pred eH
Confidence 43
No 353
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.54 E-value=0.00025 Score=79.70 Aligned_cols=102 Identities=21% Similarity=0.369 Sum_probs=58.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-Ccceeeccccch-------hcccccHHHHHHHHHHHHhcCCceEEEccc
Q 003253 566 TKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSITS-------KWFGEGEKYVKAVFSLASKIAPSVIFVDEV 637 (836)
Q Consensus 566 ~~p~~~vLL~GPpGtGKT~LA~alA~~l~~-~~i~v~~s~l~s-------~~~g~~e~~i~~lf~~A~~~~psIL~IDEI 637 (836)
..+++|++|+||+|+|||+|.-.+-..+.. .-.++....++. .+.|.. ..+..+-....+ ...||++||+
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l~~-~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADELAK-ESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHHHh-cCCEEEEeee
Confidence 346799999999999999999999887743 111111111111 111111 112222222222 2349999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 638 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 638 D~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
+.- +....-.+.+++..+. ...+++|+|+|.+
T Consensus 137 ~V~-----DiaDAmil~rLf~~l~----------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 137 QVT-----DIADAMILKRLFEALF----------KRGVVLVATSNRP 168 (362)
T ss_pred ecc-----chhHHHHHHHHHHHHH----------HCCCEEEecCCCC
Confidence 843 3333344455555543 2568999999973
No 354
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0023 Score=74.82 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=55.5
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
..-|++|||+|.+ . .+..+.|...|+..++.+++|.+++..+
T Consensus 119 ~~KVvIIDEad~L-t--~~a~naLLk~LEepp~~~v~Il~tt~~~----------------------------------- 160 (486)
T PRK14953 119 KYKVYIIDEAHML-T--KEAFNALLKTLEEPPPRTIFILCTTEYD----------------------------------- 160 (486)
T ss_pred CeeEEEEEChhhc-C--HHHHHHHHHHHhcCCCCeEEEEEECCHH-----------------------------------
Confidence 4569999999974 2 3456777788888777777777776553
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++..+|.+|+ ..+.+..|+.++....++..+.
T Consensus 161 --------kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k 192 (486)
T PRK14953 161 --------KIPPTILSRC-QRFIFSKPTKEQIKEYLKRICN 192 (486)
T ss_pred --------HHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHH
Confidence 3455677787 6899999999999888886654
No 355
>PHA00729 NTP-binding motif containing protein
Probab=97.52 E-value=0.00025 Score=74.13 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANF 597 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~ 597 (836)
.+++|+|+||||||+||.+||..++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4799999999999999999999986433
No 356
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00092 Score=78.52 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=41.1
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 94 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ 94 (836)
+|+++-+. |+.+..|..+.-- . ..+..+||+||+|+ +++++|++||+.+...
T Consensus 14 ~f~divGq--~~v~~~L~~~~~~----~----------~l~ha~Lf~Gp~G~--GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 14 CFQEVIGQ--APVVRALSNALDQ----Q----------YLHHAYLFTGTRGV--GKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHhcCC--HHHHHHHHHHHHh----C----------CCCeeEEEECCCCC--CHHHHHHHHHHHhcCC
Confidence 68888777 8888888877621 1 12447899999999 9999999999998763
No 357
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.0028 Score=66.71 Aligned_cols=175 Identities=19% Similarity=0.230 Sum_probs=101.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC---Ccceeecccc---------chhccccc--------HHHHHHHHHHHHhc-C
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGA---NFINISMSSI---------TSKWFGEG--------EKYVKAVFSLASKI-A 628 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~---~~i~v~~s~l---------~s~~~g~~--------e~~i~~lf~~A~~~-~ 628 (836)
.-+.++|+-|||||+++|++...+.- ..+.++...+ +....... +..-+.+.....+. .
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r 131 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKR 131 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999977766632 2233333221 11111111 11223344444444 4
Q ss_pred CceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc-H---HHHhhccccccCCCC
Q 003253 629 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD-E---AVIRRLPRRLMVNLP 704 (836)
Q Consensus 629 psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld-~---~l~rRf~~~I~v~~P 704 (836)
|-++++||.+.+ ....-+.++.+.+- -.+. ...-.+++||-..-...+- + .+..|++.+|++++.
T Consensus 132 ~v~l~vdEah~L-----~~~~le~Lrll~nl----~~~~--~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~ 200 (269)
T COG3267 132 PVVLMVDEAHDL-----NDSALEALRLLTNL----EEDS--SKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPL 200 (269)
T ss_pred CeEEeehhHhhh-----ChhHHHHHHHHHhh----cccc--cCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCc
Confidence 589999999988 33333443332221 1111 1113356665443222111 1 333488766888999
Q ss_pred CHHHHHHHHHHHHhhCCCC----CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 003253 705 DAPNRAKILQVILAKEDLS----PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 756 (836)
Q Consensus 705 ~~~eR~~Il~~~l~~~~l~----~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air 756 (836)
+.++-..+++..++..+.. .+..+..++..+.| .|.-+.++|..|...+..
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 9998999999998765433 45556778888888 566777777777665443
No 358
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.49 E-value=0.0036 Score=74.87 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=57.2
Q ss_pred CeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 003253 291 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 370 (836)
Q Consensus 291 p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~ 370 (836)
.=||+|||+|.+ +....|.|...|+..++.+++|-.++..+
T Consensus 133 ~KVvIIDEad~L---s~~a~naLLKtLEePp~~~~fIl~tte~~------------------------------------ 173 (598)
T PRK09111 133 YKVYIIDEVHML---STAAFNALLKTLEEPPPHVKFIFATTEIR------------------------------------ 173 (598)
T ss_pred cEEEEEEChHhC---CHHHHHHHHHHHHhCCCCeEEEEEeCChh------------------------------------
Confidence 348999999984 34567888889999888888888887554
Q ss_pred ccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 371 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 371 ~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++-..|.+|. ..|++..|+.++-...++..+.+
T Consensus 174 -------kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~k 206 (598)
T PRK09111 174 -------KVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAK 206 (598)
T ss_pred -------hhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHH
Confidence 2334577777 78999999999888888866643
No 359
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.49 E-value=0.00048 Score=69.58 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=46.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh------cccc-----------------------cH-----
Q 003253 572 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE-----------------------GE----- 614 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~------~~g~-----------------------~e----- 614 (836)
+|++||||||||+++..++... |.+++.++..+-... .+|- .+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887654 566666654321100 0000 00
Q ss_pred HHHHHHHHHHHhcCCceEEEccchhhhc
Q 003253 615 KYVKAVFSLASKIAPSVIFVDEVDSMLG 642 (836)
Q Consensus 615 ~~i~~lf~~A~~~~psIL~IDEID~L~~ 642 (836)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1124445555667899999999998753
No 360
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.46 E-value=0.00062 Score=72.13 Aligned_cols=53 Identities=19% Similarity=0.091 Sum_probs=36.8
Q ss_pred cccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhC
Q 003253 23 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 92 (836)
Q Consensus 23 ~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~ 92 (836)
..|||+|-==-+......|...+... ..+.++|+||+|+ +++.|+.|+|++..
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~~---------------~~~~l~l~Gp~G~--GKThLl~a~~~~~~ 70 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQE---------------HSGYIYLWSREGA--GRSHLLHAACAELS 70 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhCC---------------CCCeEEEECCCCC--CHHHHHHHHHHHHH
Confidence 45899875225555555555543210 1246899999999 99999999999865
No 361
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=0.0048 Score=74.15 Aligned_cols=70 Identities=10% Similarity=0.189 Sum_probs=52.9
Q ss_pred CeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 003253 291 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 370 (836)
Q Consensus 291 p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~ 370 (836)
.-||+|||+|.+ +.+..+.|...|+.-++.+++|++++.+.
T Consensus 122 ~KViIIDEad~L---t~~a~naLLK~LEePp~~tvfIL~t~~~~------------------------------------ 162 (620)
T PRK14948 122 WKVYVIDECHML---STAAFNALLKTLEEPPPRVVFVLATTDPQ------------------------------------ 162 (620)
T ss_pred ceEEEEECcccc---CHHHHHHHHHHHhcCCcCeEEEEEeCChh------------------------------------
Confidence 359999999973 34677888899998888999999988553
Q ss_pred ccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHH
Q 003253 371 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 407 (836)
Q Consensus 371 ~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~ 407 (836)
.+...|..|. ..+++..|..++-...++.
T Consensus 163 -------~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 163 -------RVLPTIISRC-QRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred -------hhhHHHHhhe-eEEEecCCCHHHHHHHHHH
Confidence 3445677777 7889988877766655553
No 362
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.44 E-value=0.0036 Score=75.02 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=57.9
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
.--|++|||+|. | +.+..|.|.+.|+.-++++++|.+||.+.
T Consensus 119 ~~KV~IIDEah~-L--s~~a~NALLKtLEEPp~~v~FIL~Tt~~~----------------------------------- 160 (647)
T PRK07994 119 RFKVYLIDEVHM-L--SRHSFNALLKTLEEPPEHVKFLLATTDPQ----------------------------------- 160 (647)
T ss_pred CCEEEEEechHh-C--CHHHHHHHHHHHHcCCCCeEEEEecCCcc-----------------------------------
Confidence 445999999997 3 35677888889999899999999988664
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++-..|..|. ..+.+..++.++-...|+..+.
T Consensus 161 --------kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~ 192 (647)
T PRK07994 161 --------KLPVTILSRC-LQFHLKALDVEQIRQQLEHILQ 192 (647)
T ss_pred --------ccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHH
Confidence 2344566676 7999999999988888876553
No 363
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.0018 Score=77.02 Aligned_cols=75 Identities=11% Similarity=0.138 Sum_probs=59.4
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
...-|++|||+|.+ +.+..+.|...|+..++.+++|.+++.+.
T Consensus 118 ~~~KVvIIDEa~~L---s~~a~naLLK~LEepp~~~vfI~~tte~~---------------------------------- 160 (563)
T PRK06647 118 SRYRVYIIDEVHML---SNSAFNALLKTIEEPPPYIVFIFATTEVH---------------------------------- 160 (563)
T ss_pred CCCEEEEEEChhhc---CHHHHHHHHHhhccCCCCEEEEEecCChH----------------------------------
Confidence 34558999999974 34567788888998888999999887653
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++.++|.+|+ ..+++.+|..++..+.++....
T Consensus 161 ---------kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 161 ---------KLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred ---------HhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHH
Confidence 4567788888 6899999999988888875553
No 364
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.42 E-value=0.00011 Score=68.85 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=27.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCcceeec
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAGANFINISM 602 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~ 602 (836)
|+|.||||+|||++|+.||..+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988766553
No 365
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0039 Score=74.51 Aligned_cols=72 Identities=11% Similarity=0.209 Sum_probs=55.3
Q ss_pred eEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 003253 292 FILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 371 (836)
Q Consensus 292 ~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~ 371 (836)
-|++|||+|. | +.+..|.|...|+.-++.+++|.+||.+.
T Consensus 126 KV~IIDEvh~-L--s~~a~NaLLKtLEEPP~~~~fIL~Ttd~~------------------------------------- 165 (618)
T PRK14951 126 KVFMIDEVHM-L--TNTAFNAMLKTLEEPPEYLKFVLATTDPQ------------------------------------- 165 (618)
T ss_pred eEEEEEChhh-C--CHHHHHHHHHhcccCCCCeEEEEEECCch-------------------------------------
Confidence 3999999998 3 34557788888988888988888887553
Q ss_pred cCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 372 RGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 372 ~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++-..|..|. ..|++..++.++-.+.|+..+.
T Consensus 166 ------kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~ 197 (618)
T PRK14951 166 ------KVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLA 197 (618)
T ss_pred ------hhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHH
Confidence 2334477777 7999999999888888875554
No 366
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.41 E-value=0.005 Score=74.62 Aligned_cols=96 Identities=13% Similarity=0.175 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC-cchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccC
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN-SDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 351 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~-~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~ 351 (836)
...++.+|..+.+ .....+||+|||||.+.... ..+|+.+.- .....+.|+|||.+|..+..
T Consensus 853 ~evLerLF~~L~k-~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~~s~SKLiLIGISNdlDLp--------------- 915 (1164)
T PTZ00112 853 FKILDRLFNQNKK-DNRNVSILIIDEIDYLITKTQKVLFTLFDW-PTKINSKLVLIAISNTMDLP--------------- 915 (1164)
T ss_pred HHHHHHHHhhhhc-ccccceEEEeehHhhhCccHHHHHHHHHHH-hhccCCeEEEEEecCchhcc---------------
Confidence 4567778877643 23456799999999876533 335554442 22234689999999965420
Q ss_pred CchhhhccccCCCccccccccCCCchhHHHHHhhhCC-ceEEecCCChHHHHHHHHHhhH
Q 003253 352 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFP-NKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 352 ~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~-~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
+ .++..+..+|. ..|.+.+++.++...||+..+.
T Consensus 916 -------e------------------rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 916 -------E------------------RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred -------h------------------hhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence 0 12334555554 3588999999999999996664
No 367
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.40 E-value=0.0019 Score=83.42 Aligned_cols=172 Identities=16% Similarity=0.237 Sum_probs=94.6
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcc---eeecccc---
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI---NISMSSI--- 605 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i---~v~~s~l--- 605 (836)
.+++++|++...+++..++... ....+-+-|+|++|+|||+||+++++.+...|- .++...+
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred ccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 4678999999999988877521 123367899999999999999999888744331 1111000
Q ss_pred chhccc----c-------cHHHHHH-------------HHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHH
Q 003253 606 TSKWFG----E-------GEKYVKA-------------VFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFM 661 (836)
Q Consensus 606 ~s~~~g----~-------~e~~i~~-------------lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll 661 (836)
...+.. . ....+.. .....-+.++.+|+||+++.. ..+..+.
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L~ 315 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDALA 315 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHHH
Confidence 000000 0 0000111 111112335679999998733 1122222
Q ss_pred HHhcCCcccCcccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCccc----HHHHHHHc
Q 003253 662 VNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD----FDAIANMT 735 (836)
Q Consensus 662 ~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~d----l~~LA~~t 735 (836)
...+.. . ..-.||.||.. ..+++ ..+.++.+..|+.++..++|..++-+.... ..+ ...+++.+
T Consensus 316 ~~~~~~---~-~GsrIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c 385 (1153)
T PLN03210 316 GQTQWF---G-SGSRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRA 385 (1153)
T ss_pred hhCccC---C-CCcEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHh
Confidence 222211 1 12234556654 33333 356778899999999999998876543322 222 23456666
Q ss_pred CCCc
Q 003253 736 DGYS 739 (836)
Q Consensus 736 ~G~s 739 (836)
.|..
T Consensus 386 ~GLP 389 (1153)
T PLN03210 386 GNLP 389 (1153)
T ss_pred CCCc
Confidence 6654
No 368
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.38 E-value=0.0017 Score=76.67 Aligned_cols=73 Identities=11% Similarity=0.206 Sum_probs=53.8
Q ss_pred CeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccc
Q 003253 291 PFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLH 370 (836)
Q Consensus 291 p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~ 370 (836)
.-|++|||+|. +. .+..|.|.+.|+..++.+++|.+||.+..
T Consensus 120 ~kVvIIDEad~-ls--~~a~naLLK~LEepp~~~~fIL~t~d~~k----------------------------------- 161 (527)
T PRK14969 120 FKVYIIDEVHM-LS--KSAFNAMLKTLEEPPEHVKFILATTDPQK----------------------------------- 161 (527)
T ss_pred ceEEEEcCccc-CC--HHHHHHHHHHHhCCCCCEEEEEEeCChhh-----------------------------------
Confidence 45999999997 33 35677888899998899999999986541
Q ss_pred ccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 371 DRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 371 ~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
+-..|..|. ..+++..|+.++-.+.++..+.
T Consensus 162 --------il~tI~SRc-~~~~f~~l~~~~i~~~L~~il~ 192 (527)
T PRK14969 162 --------IPVTVLSRC-LQFNLKQMPPPLIVSHLQHILE 192 (527)
T ss_pred --------CchhHHHHH-HHHhcCCCCHHHHHHHHHHHHH
Confidence 122355666 6888889988877777765553
No 369
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.38 E-value=0.0005 Score=85.68 Aligned_cols=134 Identities=25% Similarity=0.295 Sum_probs=85.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc------chh-cccc--cHHH-HHHHHHHHHhcCCceEEEccchh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSK-WFGE--GEKY-VKAVFSLASKIAPSVIFVDEVDS 639 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l------~s~-~~g~--~e~~-i~~lf~~A~~~~psIL~IDEID~ 639 (836)
+++||.|.||+|||+|..|+|+..|-..++++.++- ++. ..++ .+-. ...-|-.|.+ ...-+++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhhh
Confidence 459999999999999999999999999999998762 211 1111 1111 1222334444 346889999974
Q ss_pred hhcCCCCCchHHHHHHHHHHHHHHhcC---C-------cccCcccEEEEeccCCC------CCCcHHHHhhccccccCCC
Q 003253 640 MLGRRENPGEHEAMRKMKNEFMVNWDG---L-------RTKDTERILVLAATNRP------FDLDEAVIRRLPRRLMVNL 703 (836)
Q Consensus 640 L~~~r~~~~~~~~~~~il~~ll~~ld~---~-------~~~~~~~vlVIaTTn~~------~~Ld~~l~rRf~~~I~v~~ 703 (836)
- + ..++..+-..+|- . .-....++.|.||-|+. ..|+..++.|| .++.+..
T Consensus 1623 a-----S-------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~ 1689 (4600)
T COG5271 1623 A-----S-------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDG 1689 (4600)
T ss_pred h-----H-------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecc
Confidence 3 1 2233333222221 1 11224678889988874 35999999999 5777777
Q ss_pred CCHHHHHHHHHHHH
Q 003253 704 PDAPNRAKILQVIL 717 (836)
Q Consensus 704 P~~~eR~~Il~~~l 717 (836)
.+.++...|...+.
T Consensus 1690 lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1690 LTTDDITHIANKMY 1703 (4600)
T ss_pred cccchHHHHHHhhC
Confidence 77777666665544
No 370
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.33 E-value=0.0031 Score=69.48 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=31.9
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
++.|||.||||| ++.+||++||+.++.+++.+.-+
T Consensus 64 ~~~ilL~G~pGt--GKTtla~~lA~~l~~~~~rV~~~ 98 (327)
T TIGR01650 64 DRRVMVQGYHGT--GKSTHIEQIAARLNWPCVRVNLD 98 (327)
T ss_pred CCcEEEEeCCCC--hHHHHHHHHHHHHCCCeEEEEec
Confidence 578999999999 99999999999999999988643
No 371
>PRK08118 topology modulation protein; Reviewed
Probab=97.31 E-value=0.00049 Score=68.99 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeec
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 602 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~ 602 (836)
..|+++||||+|||++|+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999988874
No 372
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0043 Score=70.95 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=41.4
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 94 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ 94 (836)
+|+++-+. ++++..|..+.- .. ..+..+||+||+|+ ++.++|+++|+.+...
T Consensus 14 ~~~eiiGq--~~~~~~L~~~~~----~~----------~~~ha~lf~Gp~G~--GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 14 KFADITAQ--EHITRTIQNSLR----MG----------RVGHGYIFSGLRGV--GKTTAARVFAKAVNCQ 65 (397)
T ss_pred cHhhccCh--HHHHHHHHHHHH----hC----------CcceeEEEECCCCC--CHHHHHHHHHHHhcCC
Confidence 68888887 999888876543 11 23557999999999 9999999999999875
No 373
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.011 Score=66.89 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=51.2
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
.+-||+|||+|.+-. ...+.|...|+..+...++|.+++...
T Consensus 108 ~~kiviIDE~~~l~~---~~~~~ll~~le~~~~~~~~Il~~~~~~----------------------------------- 149 (367)
T PRK14970 108 KYKIYIIDEVHMLSS---AAFNAFLKTLEEPPAHAIFILATTEKH----------------------------------- 149 (367)
T ss_pred CcEEEEEeChhhcCH---HHHHHHHHHHhCCCCceEEEEEeCCcc-----------------------------------
Confidence 456999999997422 334566667777666666666665432
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++..+|.+++ ..+++..|+.++...++.....+
T Consensus 150 --------kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 150 --------KIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred --------cCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHH
Confidence 3345567777 47899999999888888765543
No 374
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.28 E-value=0.0013 Score=74.23 Aligned_cols=98 Identities=22% Similarity=0.401 Sum_probs=61.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh------ccc--------ccHHHHHHHHHHHHhcCC
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAP 629 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~------~~g--------~~e~~i~~lf~~A~~~~p 629 (836)
.+..-+||+|+||+|||+|+..+|... +.++++++..+-... .+| ..+..+..++..+....|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 344578999999999999999998765 456777765432111 111 112234566667777899
Q ss_pred ceEEEccchhhhcCCC--CCchHHHHHHHHHHHHHHh
Q 003253 630 SVIFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNW 664 (836)
Q Consensus 630 sIL~IDEID~L~~~r~--~~~~~~~~~~il~~ll~~l 664 (836)
.+|+||+|..+..... .++.....+.++..|....
T Consensus 160 ~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~la 196 (372)
T cd01121 160 DLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFA 196 (372)
T ss_pred cEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence 9999999998864332 1223334455555554443
No 375
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.27 E-value=0.00038 Score=72.97 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=47.8
Q ss_pred EEEEcCchhhhcc---CcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 293 ILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 293 Ilfi~ei~~~l~~---~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
+|+||||+.+-+. ..++++.+....+. |.-+||.|...|+. +.
T Consensus 100 lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~----------------------l~---------- 145 (219)
T PF00308_consen 100 LLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPPSE----------------------LS---------- 145 (219)
T ss_dssp EEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-TTT----------------------TT----------
T ss_pred EEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCCcc----------------------cc----------
Confidence 8999999984432 34566666555544 66777777666642 00
Q ss_pred cccCCCchhHHHHHhhhCCc--eEEecCCChHHHHHHHHHhhHh
Q 003253 370 HDRGKEIPKATKLLTKLFPN--KVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~--~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
..++.+..||.. .++|.+|+++.|.+|++....+
T Consensus 146 --------~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 146 --------GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp --------TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred --------ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 123456666655 8999999999999999966644
No 376
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.26 E-value=0.0013 Score=76.06 Aligned_cols=98 Identities=24% Similarity=0.406 Sum_probs=62.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhc------ccc--------cHHHHHHHHHHHHhcCC
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FGE--------GEKYVKAVFSLASKIAP 629 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~------~g~--------~e~~i~~lf~~A~~~~p 629 (836)
.+..-+||+|+||+|||+|+..+|... +.++++++..+-.... +|. .+..+..++..+.+..|
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~ 157 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKP 157 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCC
Confidence 344578999999999999999998765 5677787765422111 111 12234566677777789
Q ss_pred ceEEEccchhhhcCCCC--CchHHHHHHHHHHHHHHh
Q 003253 630 SVIFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNW 664 (836)
Q Consensus 630 sIL~IDEID~L~~~r~~--~~~~~~~~~il~~ll~~l 664 (836)
.+|+||+|..+...... ++.....+.++..|....
T Consensus 158 ~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~a 194 (446)
T PRK11823 158 DLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLA 194 (446)
T ss_pred CEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHH
Confidence 99999999988643211 223333444455444443
No 377
>PRK07261 topology modulation protein; Provisional
Probab=97.25 E-value=0.00065 Score=68.37 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=29.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMSS 604 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~ 604 (836)
.|+|+|+||+|||+||+.|+..++.+++.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999999888776533
No 378
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.24 E-value=0.00021 Score=71.70 Aligned_cols=23 Identities=52% Similarity=0.808 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l 593 (836)
+++|+|+||+||||+++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 379
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.23 E-value=0.00084 Score=76.88 Aligned_cols=172 Identities=23% Similarity=0.313 Sum_probs=105.9
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc---------ceeecccc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---------INISMSSI 605 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~---------i~v~~s~l 605 (836)
.|.|++.+|+.+.-++.+.... .+.++...+.--+||+.|.|.+.|+.|.|++.+.....+ +-+.++-.
T Consensus 302 SI~GH~~vKkAillLLlGGvEk--~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEK--NLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhcccee--ccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 4789999999988777653321 111222222334699999999999999999987652221 11221111
Q ss_pred chhcccccHHHH-HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHh--cCCcccCcccEEEEeccC
Q 003253 606 TSKWFGEGEKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDTERILVLAATN 682 (836)
Q Consensus 606 ~s~~~g~~e~~i-~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~l--d~~~~~~~~~vlVIaTTn 682 (836)
..+-.| |..+ ....-.|.+ +|+.|||+|.| +.....+...++.+--+.+ .|+...-+.++-|||++|
T Consensus 380 tD~eTG--ERRLEAGAMVLADR---GVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQETG--ERRLEAGAMVLADR---GVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred eccccc--hhhhhcCceEEccC---ceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 111112 2222 112233444 89999999999 5555566666666554444 456666678999999999
Q ss_pred CCC-------------CCcHHHHhhccccccC-CCCCHHHHHHHHHHHHh
Q 003253 683 RPF-------------DLDEAVIRRLPRRLMV-NLPDAPNRAKILQVILA 718 (836)
Q Consensus 683 ~~~-------------~Ld~~l~rRf~~~I~v-~~P~~~eR~~Il~~~l~ 718 (836)
+.+ .|++.+++||+..+.+ ..-+.+.-..|-.+.++
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 853 3788999999865544 44455444555554443
No 380
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.011 Score=70.98 Aligned_cols=51 Identities=24% Similarity=0.232 Sum_probs=40.6
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCC
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 93 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~ 93 (836)
+|+++-+. ++.+..|..++--. ..+..+||+||+|+ +++++|++||+++..
T Consensus 14 ~~~eiiGq--~~~~~~L~~~i~~~--------------~i~~a~Lf~Gp~G~--GKTtlA~~lA~~l~c 64 (585)
T PRK14950 14 TFAELVGQ--EHVVQTLRNAIAEG--------------RVAHAYLFTGPRGV--GKTSTARILAKAVNC 64 (585)
T ss_pred CHHHhcCC--HHHHHHHHHHHHhC--------------CCceEEEEECCCCC--CHHHHHHHHHHHhcC
Confidence 68888887 99988887665321 12456899999999 999999999999863
No 381
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00062 Score=75.73 Aligned_cols=37 Identities=35% Similarity=0.548 Sum_probs=34.3
Q ss_pred ceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccccCC
Q 003253 67 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLG 105 (836)
Q Consensus 67 ~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~~~~ 105 (836)
+|||-||.|| .++.||+-||+-++||+-+-|.+.|.-
T Consensus 228 NvLllGPtGs--GKTllaqTLAr~ldVPfaIcDcTtLTQ 264 (564)
T KOG0745|consen 228 NVLLLGPTGS--GKTLLAQTLARVLDVPFAICDCTTLTQ 264 (564)
T ss_pred cEEEECCCCC--chhHHHHHHHHHhCCCeEEecccchhh
Confidence 6999999999 999999999999999999999877744
No 382
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.21 E-value=0.015 Score=63.81 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=50.0
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
.+-+|+|||+|.+-. +..+.|...++..+.+..+|-.+|...
T Consensus 102 ~~~vviiDe~~~l~~---~~~~~L~~~le~~~~~~~lIl~~~~~~----------------------------------- 143 (319)
T PRK00440 102 PFKIIFLDEADNLTS---DAQQALRRTMEMYSQNTRFILSCNYSS----------------------------------- 143 (319)
T ss_pred CceEEEEeCcccCCH---HHHHHHHHHHhcCCCCCeEEEEeCCcc-----------------------------------
Confidence 356999999998422 234556677776666555555555332
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++.+.+.+|+ ..+++.+|+.++...+++..+.+
T Consensus 144 --------~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 144 --------KIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred --------ccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHH
Confidence 2234566777 47999999999988888866643
No 383
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.20 E-value=0.0023 Score=59.80 Aligned_cols=36 Identities=36% Similarity=0.582 Sum_probs=30.7
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCe---EEEEeccc
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAK---LLIFDSHS 102 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~---ll~~d~~~ 102 (836)
++.|+|.||||| ++++|+++||+.+... .+.++...
T Consensus 2 ~~~~~l~G~~G~--GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGS--GKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCC--cHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 578999999999 9999999999999986 66666533
No 384
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.19 E-value=0.011 Score=65.78 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=35.4
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhC
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 92 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~ 92 (836)
.|..+-++ ++.|..|.-++.. +..+.+||.||||| .++|||||||+-+-
T Consensus 6 ~f~~i~Gq--~~~~~~l~~~~~~---------------~~~~~vLl~G~pG~--gKT~lar~la~llP 54 (334)
T PRK13407 6 PFSAIVGQ--EEMKQAMVLTAID---------------PGIGGVLVFGDRGT--GKSTAVRALAALLP 54 (334)
T ss_pred CHHHhCCH--HHHHHHHHHHHhc---------------cCCCcEEEEcCCCC--CHHHHHHHHHHHCC
Confidence 45555555 7777766654432 22356999999999 99999999998753
No 385
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.18 E-value=0.0098 Score=69.97 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=55.5
Q ss_pred eEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 003253 292 FILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 371 (836)
Q Consensus 292 ~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~ 371 (836)
-|++|||+|.+ +.+..+.|...|+..+..+.+|-+++.+.
T Consensus 119 KVvIIDEad~L---t~~A~NALLK~LEEpp~~t~FIL~ttd~~------------------------------------- 158 (535)
T PRK08451 119 KIFIIDEVHML---TKEAFNALLKTLEEPPSYVKFILATTDPL------------------------------------- 158 (535)
T ss_pred EEEEEECcccC---CHHHHHHHHHHHhhcCCceEEEEEECChh-------------------------------------
Confidence 38999999983 45677888899998888888888776542
Q ss_pred cCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 372 RGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 372 ~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++-..|..|. ..+++..+..++-...++..+.+
T Consensus 159 ------kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~ 191 (535)
T PRK08451 159 ------KLPATILSRT-QHFRFKQIPQNSIISHLKTILEK 191 (535)
T ss_pred ------hCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHH
Confidence 3345577775 79999999988877777755543
No 386
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.013 Score=70.33 Aligned_cols=71 Identities=11% Similarity=0.180 Sum_probs=53.0
Q ss_pred eEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccc
Q 003253 292 FILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHD 371 (836)
Q Consensus 292 ~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~ 371 (836)
=|++|||+|.+ . .+..+.|...|+.-++.+++|..++...
T Consensus 129 KVvIIdEad~L-t--~~a~naLLK~LEePp~~tv~IL~t~~~~------------------------------------- 168 (620)
T PRK14954 129 RVYIIDEVHML-S--TAAFNAFLKTLEEPPPHAIFIFATTELH------------------------------------- 168 (620)
T ss_pred EEEEEeChhhc-C--HHHHHHHHHHHhCCCCCeEEEEEeCChh-------------------------------------
Confidence 38999999984 2 3456788889999888888777776442
Q ss_pred cCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhh
Q 003253 372 RGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 372 ~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l 409 (836)
++-+.|.+|. ..+++..++.++-...++..+
T Consensus 169 ------kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 169 ------KIPATIASRC-QRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred ------hhhHHHHhhc-eEEecCCCCHHHHHHHHHHHH
Confidence 4556677777 799999999887666666444
No 387
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.13 E-value=0.0004 Score=69.09 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=29.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
+..|+|+|+||||||++|+++|..++++++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 468999999999999999999999998887543
No 388
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.13 E-value=0.003 Score=66.72 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=47.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch----h--cc-----------------------c--c
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----K--WF-----------------------G--E 612 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s----~--~~-----------------------g--~ 612 (836)
.+...+++.||||||||++|..++... |...++++..+-.. . .+ + .
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSE 101 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHH
Confidence 334579999999999999986665544 55566555432100 0 00 0 0
Q ss_pred cHHHHHHHHHHHHhcCCceEEEccchhhh
Q 003253 613 GEKYVKAVFSLASKIAPSVIFVDEVDSML 641 (836)
Q Consensus 613 ~e~~i~~lf~~A~~~~psIL~IDEID~L~ 641 (836)
.+..+..+...+....|.+++||++-.+.
T Consensus 102 ~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 102 KRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 12344455556556678999999999875
No 389
>PHA02624 large T antigen; Provisional
Probab=97.12 E-value=0.0022 Score=75.18 Aligned_cols=120 Identities=18% Similarity=0.251 Sum_probs=65.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCch
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 649 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~ 649 (836)
+.+||+||||||||+++.+|++.++..++.++++.-.+. |...-...-.+.+||++-.-+.....-..
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 579999999999999999999999777777775542111 22222222257778877532211100000
Q ss_pred HHHHHHHHHHHHHHhcCCccc-----Cccc-----EEEEeccCCCCCCcHHHHhhccccccCCC
Q 003253 650 HEAMRKMKNEFMVNWDGLRTK-----DTER-----ILVLAATNRPFDLDEAVIRRLPRRLMVNL 703 (836)
Q Consensus 650 ~~~~~~il~~ll~~ld~~~~~-----~~~~-----vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~ 703 (836)
...+.. +.-+-..+||-.+. -..+ --+|.|||. ..++..+.-||..++.|..
T Consensus 500 G~~~dN-l~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQGMNN-LDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccccch-hhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000000 01223334444110 0000 123456664 5688888889988888853
No 390
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.11 E-value=0.00061 Score=79.42 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=45.9
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCCccee
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINI 600 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-~~~~i~v 600 (836)
-|+|+.|++++++.+.+.+..... +......-++|.||||+|||+||+.||+.+ .++++.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 578999999999998887732111 112233579999999999999999999988 4555554
No 391
>PF14516 AAA_35: AAA-like domain
Probab=97.10 E-value=0.0047 Score=68.83 Aligned_cols=162 Identities=15% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccc-------------------------------c
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-------------------------------G 613 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~-------------------------------~ 613 (836)
|..-+.|.||..+|||++...+.+.+ |...+.+++..+-...+.. +
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 34679999999999999999887666 7777777775532111100 1
Q ss_pred HHHHHHHHHHH---HhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc--ccCcccEEEEeccCCCCCCc
Q 003253 614 EKYVKAVFSLA---SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR--TKDTERILVLAATNRPFDLD 688 (836)
Q Consensus 614 e~~i~~lf~~A---~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~--~~~~~~vlVIaTTn~~~~Ld 688 (836)
.......|+.. .-..|-||+|||||.++.... .....+. ++..|-... .....++.+|.+......+.
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~-~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~ 182 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFG-LLRSWYEQRKNNPIWQKLRLILAGSTEDYII 182 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHH-HHHHHHHhcccCcccceEEEEEecCcccccc
Confidence 11122233321 223678999999999964221 1111111 111111111 11112333333332221121
Q ss_pred HHH-Hh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCc
Q 003253 689 EAV-IR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYS 739 (836)
Q Consensus 689 ~~l-~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~s 739 (836)
... .+ .+...+.++.-+.++...+++.+-.. . ....++.|-..+.|..
T Consensus 183 ~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 183 LDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-SQEQLEQLMDWTGGHP 233 (331)
T ss_pred cCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-CHHHHHHHHHHHCCCH
Confidence 111 11 22345677777889988888776322 2 2333888888888854
No 392
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.09 E-value=0.0031 Score=73.02 Aligned_cols=79 Identities=23% Similarity=0.270 Sum_probs=55.0
Q ss_pred CeEEEEcCchhhhc---cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 003253 291 PFILFMKDAEKSIA---GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 367 (836)
Q Consensus 291 p~Ilfi~ei~~~l~---~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r 367 (836)
+-+|+||||+.+-+ ...++++.+....+ .|..+||++++.+.. +
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k~IIlts~~~p~~----------------------l--------- 249 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGKLIVISSTCAPQD----------------------L--------- 249 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCCcEEEecCCCHHH----------------------H---------
Confidence 44899999997433 23456665554443 367777777665431 0
Q ss_pred cccccCCCchhHHHHHhhhCC--ceEEecCCChHHHHHHHHHhhHh
Q 003253 368 RLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~F~--~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
..+++.|..||. -.+.|..|+.+.|..||+.....
T Consensus 250 ---------~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 250 ---------KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred ---------hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 145677899995 68899999999999999966644
No 393
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.08 E-value=0.0022 Score=60.77 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=37.6
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.+.|+.-+.+.+...+...+..+ ...+| --+-|+|+||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~p~Kp-LVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------NPRKP-LVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------CCCCC-EEEEeecCCCCcHHHHHHHHHHHH
Confidence 46777777777777766544322 22233 567799999999999999999986
No 394
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0026 Score=77.88 Aligned_cols=139 Identities=24% Similarity=0.355 Sum_probs=96.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCCcceeeccccc--hhcccccHHHHHHHHHHHHhc-CCceEEEcc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDE 636 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~~s~l~--s~~~g~~e~~i~~lf~~A~~~-~psIL~IDE 636 (836)
++-+|.|.||+|||.++.-+|+.. +..++.++...+. .++.|+.+..++.+...+... ...||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 677999999999999999999876 2345566665443 346677888999999888844 556889999
Q ss_pred chhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-----CCCcHHHHhhccccccCCCCCHHHHHH
Q 003253 637 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAK 711 (836)
Q Consensus 637 ID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-----~~Ld~~l~rRf~~~I~v~~P~~~eR~~ 711 (836)
++-+.+...+.+...+. +-|.-.+ .++.+.+|+||... ..-+|++-+||+ .+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~~~d~~----nlLkp~L------~rg~l~~IGatT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYGAIDAA----NLLKPLL------ARGGLWCIGATTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcchHHHHH----HhhHHHH------hcCCeEEEecccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhh
Confidence 99998766542222222 2221111 12338888877532 245789999994 67889999988777
Q ss_pred HHHHHHhh
Q 003253 712 ILQVILAK 719 (836)
Q Consensus 712 Il~~~l~~ 719 (836)
||+.+-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 88776654
No 395
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.07 E-value=0.003 Score=69.67 Aligned_cols=77 Identities=26% Similarity=0.318 Sum_probs=51.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch----------------hcccccHHHHHHHHHHHHhc
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKI 627 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s----------------~~~g~~e~~i~~lf~~A~~~ 627 (836)
.+..-++|+||||||||+||..++.+. +.+++.+++..-.. ......+..+..+....+..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~ 132 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSG 132 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcc
Confidence 344568999999999999998876554 66677776543111 01112233444444455666
Q ss_pred CCceEEEccchhhhcC
Q 003253 628 APSVIFVDEVDSMLGR 643 (836)
Q Consensus 628 ~psIL~IDEID~L~~~ 643 (836)
.+.+|+||-+..+.+.
T Consensus 133 ~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 133 AVDIIVVDSVAALVPK 148 (321)
T ss_pred CCcEEEEcchhhhccc
Confidence 7899999999999753
No 396
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.05 E-value=0.0025 Score=66.81 Aligned_cols=37 Identities=35% Similarity=0.583 Sum_probs=30.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecc
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 603 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s 603 (836)
.+..-++|+||||+|||++|..+|.+. +.+++.++..
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 334568999999999999999998755 6777888776
No 397
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.03 E-value=0.0041 Score=70.49 Aligned_cols=173 Identities=22% Similarity=0.307 Sum_probs=96.0
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceee----ccccchhcc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS----MSSITSKWF 610 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~----~s~l~s~~~ 610 (836)
.|.|.+++|+.+.-++...-+.. +-.+-..+.--+|||.|.|||.|+.|.+-+-+-.-..++.-- ++.|.....
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~--LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKR--LPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhcCcccc--CCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 47899999999988776532110 000101122246999999999999999988665533332210 000100000
Q ss_pred ccc---HHHH-HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHH--HHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 611 GEG---EKYV-KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMK--NEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 611 g~~---e~~i-~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il--~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
..+ +-++ ....-.| ..+|+.|||+|.| .+.+.-+....+ +++...-.|+.+.-+.+.-|+|++|.+
T Consensus 410 RD~~tReFylEGGAMVLA---DgGVvCIDEFDKM-----re~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpv 481 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAMVLA---DGGVVCIDEFDKM-----REDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPV 481 (729)
T ss_pred ecCCcceEEEecceEEEe---cCCEEEeehhhcc-----CchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCc
Confidence 000 0000 0011122 3489999999999 222333333333 233334456666677889999999985
Q ss_pred C-------------CCcHHHHhhccccccCCCCCHH-HHHHHHHHHH
Q 003253 685 F-------------DLDEAVIRRLPRRLMVNLPDAP-NRAKILQVIL 717 (836)
Q Consensus 685 ~-------------~Ld~~l~rRf~~~I~v~~P~~~-eR~~Il~~~l 717 (836)
. ++-+.+++|||.++-+..-..+ .-..|.++.+
T Consensus 482 fGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 482 FGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred cccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 2 2458999999988777544333 3334444433
No 398
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.03 E-value=0.0013 Score=82.38 Aligned_cols=136 Identities=20% Similarity=0.250 Sum_probs=89.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc------cchhcccccHHH---HHHHHHHHHhcCCceEEEccchhhh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKY---VKAVFSLASKIAPSVIFVDEVDSML 641 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~------l~s~~~g~~e~~---i~~lf~~A~~~~psIL~IDEID~L~ 641 (836)
.+||.||+.+|||+....+|.+.|..|++++-.+ +.+.|+....+. -..+.-.|-+.. --|++||+...
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 5999999999999999999999999999998644 333333322221 123344444433 46889999744
Q ss_pred cCCCCCchHHHHHHHHHHHHHHhcCCc-------ccCcccEEEEeccCCCC------CCcHHHHhhccccccCCCCCHHH
Q 003253 642 GRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRPF------DLDEAVIRRLPRRLMVNLPDAPN 708 (836)
Q Consensus 642 ~~r~~~~~~~~~~~il~~ll~~ld~~~-------~~~~~~vlVIaTTn~~~------~Ld~~l~rRf~~~I~v~~P~~~e 708 (836)
....-+++++++.. -+.+. -.+...+++.||-|+|. .|..+++.|| ..++|..-..++
T Consensus 968 ----pTDVLEaLNRLLDD----NRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedE 1038 (4600)
T COG5271 968 ----PTDVLEALNRLLDD----NRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDE 1038 (4600)
T ss_pred ----cHHHHHHHHHhhcc----ccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHH
Confidence 22223333333321 11111 12346788899999875 3788999999 788888878888
Q ss_pred HHHHHHHHH
Q 003253 709 RAKILQVIL 717 (836)
Q Consensus 709 R~~Il~~~l 717 (836)
...||+..+
T Consensus 1039 le~ILh~rc 1047 (4600)
T COG5271 1039 LEEILHGRC 1047 (4600)
T ss_pred HHHHHhccC
Confidence 888887654
No 399
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.03 E-value=0.0084 Score=61.01 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=52.4
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
...-||+|||+|.+- .+..+.|...|+..+...++|-.++...
T Consensus 95 ~~~kviiide~~~l~---~~~~~~Ll~~le~~~~~~~~il~~~~~~---------------------------------- 137 (188)
T TIGR00678 95 SGRRVVIIEDAERMN---EAAANALLKTLEEPPPNTLFILITPSPE---------------------------------- 137 (188)
T ss_pred CCeEEEEEechhhhC---HHHHHHHHHHhcCCCCCeEEEEEECChH----------------------------------
Confidence 456799999999842 2345667778877666666666555432
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 407 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~ 407 (836)
++.++|.+|. ..+++.+|+.++..++++.
T Consensus 138 ---------~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 138 ---------KLLPTIRSRC-QVLPFPPLSEEALLQWLIR 166 (188)
T ss_pred ---------hChHHHHhhc-EEeeCCCCCHHHHHHHHHH
Confidence 4466788888 6999999999998888873
No 400
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0015 Score=69.50 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=26.9
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 97 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~ 97 (836)
---|||+||||. ++++||.=+|++.|+++=+
T Consensus 52 lDHvLl~GPPGl--GKTTLA~IIA~Emgvn~k~ 82 (332)
T COG2255 52 LDHVLLFGPPGL--GKTTLAHIIANELGVNLKI 82 (332)
T ss_pred cCeEEeeCCCCC--cHHHHHHHHHHHhcCCeEe
Confidence 345999999987 9999999999999998643
No 401
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.02 E-value=0.0049 Score=68.05 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=44.2
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 604 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~ 604 (836)
+.+.+.....|..++.. ....-|..+.|+|..|||||++.+++-+.++.+.+.++|-+
T Consensus 8 v~~Re~qi~~L~~Llg~-----------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGN-----------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred ccchHHHHHHHHHHhCC-----------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 45556677777766642 11233467899999999999999999999999999988754
No 402
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.01 E-value=0.0044 Score=58.56 Aligned_cols=38 Identities=34% Similarity=0.578 Sum_probs=31.8
Q ss_pred CCCceeeecCCCchHHHHHHHHHHHhHh---CCeEEEEecccc
Q 003253 64 VNPRILLSGPAGSEIYQEMLAKALAHYF---GAKLLIFDSHSL 103 (836)
Q Consensus 64 ~~~~iLl~gp~g~e~y~~~l~kala~~~---~~~ll~~d~~~~ 103 (836)
..+.|++.||+|+ ++.+|+++++++. +.+++.++.+.+
T Consensus 18 ~~~~v~i~G~~G~--GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLYGPPGT--GKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred CCCeEEEECCCCC--CHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 4567999999999 9999999999998 777777775443
No 403
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.99 E-value=0.0012 Score=63.67 Aligned_cols=32 Identities=53% Similarity=0.808 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCcceeecccc
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 605 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l 605 (836)
|+++||||+|||++|+.++..++.. .++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~--~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAV--VISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEE--EEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCE--EEeHHHH
Confidence 7899999999999999999999943 3444443
No 404
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.98 E-value=0.0079 Score=63.10 Aligned_cols=53 Identities=23% Similarity=0.154 Sum_probs=38.2
Q ss_pred cccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHh
Q 003253 23 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYF 91 (836)
Q Consensus 23 ~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~ 91 (836)
..|||+|.---++.....|.++.. . ....+.++|+||+|| +++.||+|+|++.
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~-------------~-~~~~~~~~l~G~~G~--GKT~La~ai~~~~ 66 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA-------------G-PVADRFFYLWGEAGS--GRSHLLQALVADA 66 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh-------------c-cCCCCeEEEECCCCC--CHHHHHHHHHHHH
Confidence 478999974444555555555432 0 123567999999999 9999999999974
No 405
>PRK06620 hypothetical protein; Validated
Probab=96.98 E-value=0.0032 Score=65.77 Aligned_cols=72 Identities=17% Similarity=0.241 Sum_probs=50.6
Q ss_pred EEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccccc
Q 003253 293 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDR 372 (836)
Q Consensus 293 Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~ 372 (836)
+|+|||||.+ ...++.+.+....+ .|..+||+|++.+.+ +
T Consensus 88 ~lliDdi~~~--~~~~lf~l~N~~~e--~g~~ilits~~~p~~--------------------------l---------- 127 (214)
T PRK06620 88 AFIIEDIENW--QEPALLHIFNIINE--KQKYLLLTSSDKSRN--------------------------F---------- 127 (214)
T ss_pred EEEEeccccc--hHHHHHHHHHHHHh--cCCEEEEEcCCCccc--------------------------c----------
Confidence 7999999964 11345555554444 378999999987752 1
Q ss_pred CCCchhHHHHHhhhCCc--eEEecCCChHHHHHHHHHhhH
Q 003253 373 GKEIPKATKLLTKLFPN--KVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 373 ~~~~~~~~~~l~~~F~~--~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
.+ .+|..|+.+ .++|..|+++.+..++++...
T Consensus 128 -----~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 128 -----TL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred -----ch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 22 447777732 699999999999999986653
No 406
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.95 E-value=0.0027 Score=68.52 Aligned_cols=93 Identities=19% Similarity=0.300 Sum_probs=60.4
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---Ccceee-ccccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINIS-MSSIT 606 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~---~~i~v~-~s~l~ 606 (836)
.++++++-.+...+.|++++.. +...++|.||+|+|||++++++...+.. .++.+. ..++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4677777777777777766642 2246999999999999999999877632 233332 12211
Q ss_pred hh-----ccc-ccHHHHHHHHHHHHhcCCceEEEccch
Q 003253 607 SK-----WFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 638 (836)
Q Consensus 607 s~-----~~g-~~e~~i~~lf~~A~~~~psIL~IDEID 638 (836)
-. .+. ........+...+-+..|.+|+|+|+.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 00 011 111234566677778899999999996
No 407
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.95 E-value=0.0037 Score=69.01 Aligned_cols=76 Identities=28% Similarity=0.331 Sum_probs=50.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch----------------hcccccHHHHHHHHHHHHhcC
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 628 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s----------------~~~g~~e~~i~~lf~~A~~~~ 628 (836)
+.+-++|+||||+|||+||..++.+. +...+.++...-.. ......+..+..+-..++...
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~ 133 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGA 133 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccC
Confidence 33568999999999999999887544 66777776633110 011122333444444455667
Q ss_pred CceEEEccchhhhcC
Q 003253 629 PSVIFVDEVDSMLGR 643 (836)
Q Consensus 629 psIL~IDEID~L~~~ 643 (836)
+.+|+||-+-.+.+.
T Consensus 134 ~~lIVIDSvaal~~~ 148 (325)
T cd00983 134 VDLIVVDSVAALVPK 148 (325)
T ss_pred CCEEEEcchHhhccc
Confidence 899999999999753
No 408
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.94 E-value=0.00074 Score=69.29 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=54.2
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCCcceeeccccch----hcccccHH-------------HHHHHHHHHHhcCCc
Q 003253 572 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITS----KWFGEGEK-------------YVKAVFSLASKIAPS 630 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~al-A~~l---~~~~i~v~~s~l~s----~~~g~~e~-------------~i~~lf~~A~~~~ps 630 (836)
.|++|.||+|||+.|-.. .... |.+++. +...+.- ...+.... .......-...-..+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 689999999999987665 4433 555444 3322210 10010000 001111111111468
Q ss_pred eEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccC
Q 003253 631 VIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMV 701 (836)
Q Consensus 631 IL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v 701 (836)
+|+|||+..+++.+..... .....+ +++.. . ....+-||.+|..+..+++.+++..+..+++
T Consensus 82 liviDEa~~~~~~r~~~~~--~~~~~~-~~l~~---h---Rh~g~diiliTQ~~~~id~~ir~lve~~~~~ 143 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK--KVPEII-EFLAQ---H---RHYGWDIILITQSPSQIDKFIRDLVEYHYHC 143 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGG---C---CCTT-EEEEEES-GGGB-HHHHCCEEEEEEE
T ss_pred EEEEECChhhcCCCccccc--cchHHH-HHHHH---h---CcCCcEEEEEeCCHHHHhHHHHHHHheEEEE
Confidence 9999999999987754211 112222 22222 1 2245677788999999999998865555544
No 409
>PHA02774 E1; Provisional
Probab=96.94 E-value=0.0093 Score=69.87 Aligned_cols=129 Identities=15% Similarity=0.263 Sum_probs=71.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcce-eeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG 648 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~-v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~ 648 (836)
+.++|+||||||||++|.+|++.++..++. ++... .+ . +..+. .-.|++|||+-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~F------w----Lqpl~--d~ki~vlDD~t~~-------- 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HF------W----LQPLA--DAKIALLDDATHP-------- 491 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---cc------c----cchhc--cCCEEEEecCcch--------
Confidence 689999999999999999999999755544 44311 11 0 11111 1269999998211
Q ss_pred hHHHHHHHHHHHHHHhcCCccc---------CcccEEEEeccCCCCCCcH---HHHhhccccccCCC-------------
Q 003253 649 EHEAMRKMKNEFMVNWDGLRTK---------DTERILVLAATNRPFDLDE---AVIRRLPRRLMVNL------------- 703 (836)
Q Consensus 649 ~~~~~~~il~~ll~~ld~~~~~---------~~~~vlVIaTTn~~~~Ld~---~l~rRf~~~I~v~~------------- 703 (836)
-..... ..+-..++|-+.. .-..--+|.|||..-.-++ .+.+|+ ..+.|+.
T Consensus 492 ~w~y~d---~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n~~P~d~~G~P~f~ 567 (613)
T PHA02774 492 CWDYID---TYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPNPFPLDENGNPVFE 567 (613)
T ss_pred HHHHHH---HHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCCCCCcCCCCCEeee
Confidence 001111 1233344554100 0011245667885333333 444564 2333321
Q ss_pred CCHHHHHHHHHHHHhhCCCCCc
Q 003253 704 PDAPNRAKILQVILAKEDLSPD 725 (836)
Q Consensus 704 P~~~eR~~Il~~~l~~~~l~~d 725 (836)
.+...-+.+|+++-....+.+.
T Consensus 568 ltd~~WKsFF~rlw~~LdL~d~ 589 (613)
T PHA02774 568 LTDANWKSFFERLWSQLDLSDQ 589 (613)
T ss_pred eCchhHHHHHHHHHHHcCCCCc
Confidence 2567788888888888777633
No 410
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.93 E-value=0.0063 Score=61.22 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=46.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh-cc----------------cccHHHHHHHHHHHHhcCCceEE
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-WF----------------GEGEKYVKAVFSLASKIAPSVIF 633 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~-~~----------------g~~e~~i~~lf~~A~~~~psIL~ 633 (836)
.+|+.|+||||||++|..++..++.+++++........ +. -+....+..++... ..++.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 58999999999999999999998877777765442111 00 00011233333221 23467899
Q ss_pred Eccchhhhc
Q 003253 634 VDEVDSMLG 642 (836)
Q Consensus 634 IDEID~L~~ 642 (836)
||-+..|..
T Consensus 82 ID~Lt~~~~ 90 (170)
T PRK05800 82 VDCLTTWVT 90 (170)
T ss_pred ehhHHHHHH
Confidence 999999864
No 411
>PRK14974 cell division protein FtsY; Provisional
Probab=96.93 E-value=0.0087 Score=66.62 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
+.-++|+||+|+|||+++..+|..+ +..+..+++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4689999999999999999888766 445544444
No 412
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.018 Score=69.28 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=56.6
Q ss_pred EEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccccc
Q 003253 293 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDR 372 (836)
Q Consensus 293 Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~ 372 (836)
|++|||+|.+ +.+..+.|...|+..++.+++|.+++...
T Consensus 124 VvIIdea~~L---s~~a~naLLK~LEepp~~tifIL~tt~~~-------------------------------------- 162 (614)
T PRK14971 124 IYIIDEVHML---SQAAFNAFLKTLEEPPSYAIFILATTEKH-------------------------------------- 162 (614)
T ss_pred EEEEECcccC---CHHHHHHHHHHHhCCCCCeEEEEEeCCch--------------------------------------
Confidence 8999999984 45678889999999888888888887543
Q ss_pred CCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 373 GKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 373 ~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++-+.|.+|. ..+++..+..++-...++....+
T Consensus 163 -----kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~ 195 (614)
T PRK14971 163 -----KILPTILSRC-QIFDFNRIQVADIVNHLQYVASK 195 (614)
T ss_pred -----hchHHHHhhh-heeecCCCCHHHHHHHHHHHHHH
Confidence 4556777887 78999999998887777755433
No 413
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.88 E-value=0.0016 Score=67.02 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=42.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCC----cceeec-cccch---------hcccccHHHHHHHHHHHHhcCCceEEEcc
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGAN----FINISM-SSITS---------KWFGEGEKYVKAVFSLASKIAPSVIFVDE 636 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~----~i~v~~-s~l~s---------~~~g~~e~~i~~lf~~A~~~~psIL~IDE 636 (836)
-++|.||+|+|||+++++++..+..+ ++.+.. .++.. ...|.........+..+-+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 48999999999999999998877422 222211 11110 01122222345556666677899999999
Q ss_pred ch
Q 003253 637 VD 638 (836)
Q Consensus 637 ID 638 (836)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 84
No 414
>PRK13947 shikimate kinase; Provisional
Probab=96.87 E-value=0.00087 Score=66.88 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
+|+|.|+||||||++|+.+|+.++++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999987655
No 415
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.85 E-value=0.0058 Score=63.24 Aligned_cols=71 Identities=28% Similarity=0.371 Sum_probs=47.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C---C---Ccceeec-cccchhccccc-------------HHHHHHHHHHHHhc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA--G---A---NFINISM-SSITSKWFGEG-------------EKYVKAVFSLASKI 627 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l--~---~---~~i~v~~-s~l~s~~~g~~-------------e~~i~~lf~~A~~~ 627 (836)
.+.||.||||+|||++.+-||.-+ | + .+.-++- +++.+...|-+ +-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999877 2 1 2223332 23322222221 12234456777888
Q ss_pred CCceEEEccchhh
Q 003253 628 APSVIFVDEVDSM 640 (836)
Q Consensus 628 ~psIL~IDEID~L 640 (836)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999855
No 416
>PRK03839 putative kinase; Provisional
Probab=96.85 E-value=0.00082 Score=67.88 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
.|+|.|+||+|||++++.||+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999887654
No 417
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0068 Score=61.77 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l 593 (836)
=++|+|+||+|||++|+.+|+++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 48999999999999999999999
No 418
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.022 Score=64.87 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=25.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCCcceeec
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA----GANFINISM 602 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~ 602 (836)
..++|.||+|+|||+++..+|... |..+..+++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 468999999999999999999754 344444444
No 419
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.82 E-value=0.0022 Score=69.31 Aligned_cols=69 Identities=28% Similarity=0.376 Sum_probs=43.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------Ccceee-ccccchhcc-------cc------cHHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSKWF-------GE------GEKYVKAVFSLAS 625 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~----------~~i~v~-~s~l~s~~~-------g~------~e~~i~~lf~~A~ 625 (836)
.+++|.||+|+|||++.++++..+.. .+..++ ..++...+. |. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999988732 222111 112211110 10 1112334666777
Q ss_pred hcCCceEEEccch
Q 003253 626 KIAPSVIFVDEVD 638 (836)
Q Consensus 626 ~~~psIL~IDEID 638 (836)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999964
No 420
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.82 E-value=0.003 Score=65.07 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=50.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc----hhcccccHHHHHHHHHHHH---------hcCCceEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SKWFGEGEKYVKAVFSLAS---------KIAPSVIF 633 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~----s~~~g~~e~~i~~lf~~A~---------~~~psIL~ 633 (836)
+-.+|.||||||||++++.++..+ +..++.+.+..-. ....|.....+..++.... .....+|+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 468899999999999999987665 5566665543211 0111111111222211111 12347999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC
Q 003253 634 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 683 (836)
Q Consensus 634 IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~ 683 (836)
|||+..+. ...+..++..... .+.++++++-.+.
T Consensus 99 VDEasmv~------------~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEASMVD------------SRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSGGG-B------------HHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred EecccccC------------HHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 99998772 2223333333322 2367888887765
No 421
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.81 E-value=0.0087 Score=63.42 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
.+...+|++||||+|||++|..++.+. |-+.+.++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 455789999999999999998876542 556655554
No 422
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.81 E-value=0.0063 Score=61.18 Aligned_cols=71 Identities=20% Similarity=0.275 Sum_probs=46.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh----------------c-ccccHHHHHHHHHHHHhcCCceEEE
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----------------W-FGEGEKYVKAVFSLASKIAPSVIFV 634 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~----------------~-~g~~e~~i~~lf~~A~~~~psIL~I 634 (836)
+|+.|++|+|||++|..++...+.+++++....-.+. | ..+....+...+... ..+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887778877765432111 0 011122233333211 15679999
Q ss_pred ccchhhhcCC
Q 003253 635 DEVDSMLGRR 644 (836)
Q Consensus 635 DEID~L~~~r 644 (836)
|-+..|...-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887543
No 423
>PRK00625 shikimate kinase; Provisional
Probab=96.80 E-value=0.001 Score=67.05 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
.|+|+|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999987765
No 424
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.80 E-value=0.0078 Score=62.69 Aligned_cols=36 Identities=36% Similarity=0.555 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecc
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 603 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s 603 (836)
+..-++|+|+||+|||++|..+|.+. +.+++.++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 33568999999999999999998765 5666667553
No 425
>PRK05642 DNA replication initiation factor; Validated
Probab=96.80 E-value=0.014 Score=61.70 Aligned_cols=75 Identities=8% Similarity=0.103 Sum_probs=50.3
Q ss_pred EEEEcCchhhhcc---CcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 293 ILFMKDAEKSIAG---NSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 293 Ilfi~ei~~~l~~---~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
+|+|||++.+-+. ..++++.+-...+ +|..+||++++.+..- .
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~--~g~~ilits~~~p~~l----------------------~---------- 145 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRD--SGRRLLLAASKSPREL----------------------P---------- 145 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHh--cCCEEEEeCCCCHHHc----------------------C----------
Confidence 6899999974331 2345665544332 4788999998876420 0
Q ss_pred cccCCCchhHHHHHhhhC--CceEEecCCChHHHHHHHHHhh
Q 003253 370 HDRGKEIPKATKLLTKLF--PNKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F--~~~ieI~lP~~e~rl~Ilk~~l 409 (836)
.....|..|| ...+.|..|+++.|+.+++...
T Consensus 146 --------~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 146 --------IKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred --------ccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 1123467777 3678899999999999999544
No 426
>PRK10536 hypothetical protein; Provisional
Probab=96.80 E-value=0.0065 Score=64.74 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 003253 571 GILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~ 592 (836)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999985
No 427
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.77 E-value=0.0011 Score=64.65 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999998877554
No 428
>PRK09087 hypothetical protein; Validated
Probab=96.75 E-value=0.0043 Score=65.37 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=53.4
Q ss_pred EEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccccccc
Q 003253 293 ILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDR 372 (836)
Q Consensus 293 Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~ 372 (836)
.|.|||++.+-....++++.+....+. |..+||++++.+..- .
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~~~--g~~ilits~~~p~~~----------------------~------------- 132 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVRQA--GTSLLMTSRLWPSSW----------------------N------------- 132 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHhC--CCeEEEECCCChHHh----------------------c-------------
Confidence 578899996433445566666555543 788999998877520 0
Q ss_pred CCCchhHHHHHhhhCC--ceEEecCCChHHHHHHHHHhhHh
Q 003253 373 GKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 373 ~~~~~~~~~~l~~~F~--~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
.....|..||. ..++|..|+++.|.++++.....
T Consensus 133 -----~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 133 -----VKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred -----cccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 11233666674 78999999999999999976644
No 429
>PRK13695 putative NTPase; Provisional
Probab=96.74 E-value=0.0058 Score=61.41 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.++|+|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988765
No 430
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.72 E-value=0.0011 Score=64.08 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
.+||++|-||||||+++.+||...+++++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999998887764
No 431
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.72 E-value=0.0098 Score=69.05 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=52.9
Q ss_pred CeEEEEcCchhhhc---cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccc
Q 003253 291 PFILFMKDAEKSIA---GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFG 367 (836)
Q Consensus 291 p~Ilfi~ei~~~l~---~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r 367 (836)
+-+|+|||++.+-+ ...++++.+-...+. |.-+||.|...+.. +.
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~--~k~iIltsd~~P~~----------------------l~-------- 254 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN--DKQLFFSSDKSPEL----------------------LN-------- 254 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHc--CCcEEEECCCCHHH----------------------Hh--------
Confidence 44899999997432 124566666555543 55667777665531 10
Q ss_pred cccccCCCchhHHHHHhhhCC--ceEEecCCChHHHHHHHHHhhHh
Q 003253 368 RLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~F~--~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
.+++.|..||. -.+.|.+|+.++|..|++..+..
T Consensus 255 ----------~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 255 ----------GFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred ----------hccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 23566888884 57889999999999999977754
No 432
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.71 E-value=0.012 Score=61.79 Aligned_cols=74 Identities=20% Similarity=0.385 Sum_probs=48.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCCcceeeccccc-----------------------------hhc----
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT-----------------------------SKW---- 609 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~s~l~-----------------------------s~~---- 609 (836)
++...+|+.||||+|||.++..++.+. |-+++.++..+-. ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 444679999999999999999876433 6777666643210 000
Q ss_pred ccccHHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 610 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 610 ~g~~e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
.......+..+...+....+.+++||.+..+
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0122334555666667778899999999999
No 433
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.71 E-value=0.02 Score=72.28 Aligned_cols=153 Identities=16% Similarity=0.194 Sum_probs=80.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc-----------chhc----ccc---------------cHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-----------TSKW----FGE---------------GEKYVKA 619 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l-----------~s~~----~g~---------------~e~~i~~ 619 (836)
+-++|+||+|.|||+++...+...+ ++..++...- .... .+. ....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4699999999999999999887766 6555544210 0000 000 0111233
Q ss_pred HHHHHHh-cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhcccc
Q 003253 620 VFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRR 698 (836)
Q Consensus 620 lf~~A~~-~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~ 698 (836)
++..... ..|.+|+|||++.+- + ......+..++ +..+ ..+.+|.++...-.+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~---~~~~----~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFL---RHQP----ENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHH---HhCC----CCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333333 568899999999761 1 11122333333 2221 23334335543222321111111223
Q ss_pred ccCC----CCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcH
Q 003253 699 LMVN----LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 740 (836)
Q Consensus 699 I~v~----~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg 740 (836)
+.+. ..+.++-.+++...+.. . .+..+...|...|+|+..
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~-~-~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSS-P-IEAAESSRLCDDVEGWAT 220 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCC-C-CCHHHHHHHHHHhCChHH
Confidence 3444 56888888888765432 1 134567788888888653
No 434
>PRK04296 thymidine kinase; Provisional
Probab=96.70 E-value=0.0086 Score=61.30 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=40.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCCcceeec--c--c----cchhccccc-----HHHHHHHHHHH--HhcCCceE
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA---GANFINISM--S--S----ITSKWFGEG-----EKYVKAVFSLA--SKIAPSVI 632 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~--s--~----l~s~~~g~~-----e~~i~~lf~~A--~~~~psIL 632 (836)
-.|++||+|+|||+++..++..+ +..++.+.. . . +.+. .|-. ......++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47999999999999998888776 445554432 1 1 1111 1110 01123333333 23456899
Q ss_pred EEccchhh
Q 003253 633 FVDEVDSM 640 (836)
Q Consensus 633 ~IDEID~L 640 (836)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999755
No 435
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.70 E-value=0.015 Score=66.44 Aligned_cols=133 Identities=17% Similarity=0.199 Sum_probs=75.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchH
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~ 650 (836)
-++|+||.++|||++++.+.....-.++.++..++......- ...-..+..+.......||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999988888875556666655543322111 112222233333244799999999771
Q ss_pred HHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC--CCCcHHHHhhccccccCCCCCHHHHHH-------------HHHH
Q 003253 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP--FDLDEAVIRRLPRRLMVNLPDAPNRAK-------------ILQV 715 (836)
Q Consensus 651 ~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~--~~Ld~~l~rRf~~~I~v~~P~~~eR~~-------------Il~~ 715 (836)
...+.+.. ..|... .++++.+++... ....+.+..|. ..+.+.+.+..+... .+..
T Consensus 108 -~W~~~lk~---l~d~~~----~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~ 178 (398)
T COG1373 108 -DWERALKY---LYDRGN----LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFEK 178 (398)
T ss_pred -hHHHHHHH---HHcccc----ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHHH
Confidence 11222222 223221 134554444322 22344555575 567777778887754 5667
Q ss_pred HHhhCCCC
Q 003253 716 ILAKEDLS 723 (836)
Q Consensus 716 ~l~~~~l~ 723 (836)
++...++.
T Consensus 179 Yl~~GGfP 186 (398)
T COG1373 179 YLETGGFP 186 (398)
T ss_pred HHHhCCCc
Confidence 77665544
No 436
>PRK13949 shikimate kinase; Provisional
Probab=96.69 E-value=0.0014 Score=65.92 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
..|+|+|+||+|||++++.+|+.++++++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999888766
No 437
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.66 E-value=0.0096 Score=69.12 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=52.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh------cccc--------cHHHHHHHHHHHHhcCC
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAP 629 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~------~~g~--------~e~~i~~lf~~A~~~~p 629 (836)
.+..-+||+|+||+|||+|+..+|... +.++++++..+-... -+|. .+..+..+...+.+..|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 444568999999999999999998765 456777766432111 0111 11234556666677789
Q ss_pred ceEEEccchhhhc
Q 003253 630 SVIFVDEVDSMLG 642 (836)
Q Consensus 630 sIL~IDEID~L~~ 642 (836)
.+|+||.|..+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998864
No 438
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.66 E-value=0.008 Score=62.05 Aligned_cols=69 Identities=25% Similarity=0.434 Sum_probs=40.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCCcc-------------eeeccc-cchh--cccccHHHHHHHHHHHHhcC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA-----GANFI-------------NISMSS-ITSK--WFGEGEKYVKAVFSLASKIA 628 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i-------------~v~~s~-l~s~--~~g~~e~~i~~lf~~A~~~~ 628 (836)
.-++|+||+|+|||++.+.++... |.++- .+...+ +... .+......+..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 568999999999999999998533 43220 000000 0000 00001123555666655457
Q ss_pred CceEEEccch
Q 003253 629 PSVIFVDEVD 638 (836)
Q Consensus 629 psIL~IDEID 638 (836)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 8999999975
No 439
>PRK06217 hypothetical protein; Validated
Probab=96.65 E-value=0.0016 Score=66.12 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=28.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
..|+|.|+||+|||++|++|+..++++++..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 35999999999999999999999998876655
No 440
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.011 Score=66.97 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=60.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC-------CCcceeeccccc----------hh------cccccHHHHHHHHHHHH
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSIT----------SK------WFGEGEKYVKAVFSLAS 625 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~-------~~~i~v~~s~l~----------s~------~~g~~e~~i~~lf~~A~ 625 (836)
+..++|+||+|+|||+++..+|..+. ..+..+++..+. .. ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 36799999999999999999987652 333333332210 00 0111122233333322
Q ss_pred hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhc
Q 003253 626 KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRL 695 (836)
Q Consensus 626 ~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf 695 (836)
....+|+||.+.... . .... +.++...++.... +...++|+.+|.....+. .+.++|
T Consensus 253 -~~~DlVLIDTaGr~~-----~-~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~-~~~~~~ 309 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP-----K-DFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVK-EIFHQF 309 (388)
T ss_pred -CCCCEEEEcCCCCCc-----c-CHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHH-HHHHHh
Confidence 345899999998662 1 1111 2333333333221 225678887777766665 344444
No 441
>PRK06762 hypothetical protein; Provisional
Probab=96.63 E-value=0.0043 Score=61.65 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 606 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~ 606 (836)
.-++|+|+||+|||++|+.++..++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4689999999999999999999997666666655543
No 442
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.009 Score=67.27 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..++|.||+|+|||+++..||..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999764
No 443
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.63 E-value=0.0065 Score=69.80 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=68.2
Q ss_pred CcCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 522 DVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 522 ~ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
.+++......++++++......+.+.+.+. +|-.=+|++||+|+|||+...++..+++.+..++.
T Consensus 226 Ril~~~~~~l~l~~Lg~~~~~~~~~~~~~~---------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~ 290 (500)
T COG2804 226 RILDKDQVILDLEKLGMSPFQLARLLRLLN---------------RPQGLILVTGPTGSGKTTTLYAALSELNTPERNII 290 (500)
T ss_pred EEeccccccCCHHHhCCCHHHHHHHHHHHh---------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEE
Confidence 334444446778888888888888888775 34345899999999999999999999976655432
Q ss_pred c-c---ccchhccccc------HHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 602 M-S---SITSKWFGEG------EKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 602 ~-s---~l~s~~~g~~------e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
. . ++.-.-+... .-.....+...-+..|.||++.||...
T Consensus 291 TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD~ 339 (500)
T COG2804 291 TIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRDL 339 (500)
T ss_pred EeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCCH
Confidence 2 1 1111000000 011344555566789999999999743
No 444
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.62 E-value=0.0036 Score=70.32 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
...||+||||+|||+|++.|++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 4589999999999999999998774
No 445
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.62 E-value=0.0015 Score=65.91 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=28.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
|+|+||||||||++|+.||..+++ ..+++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHH
Confidence 789999999999999999999975 4556555543
No 446
>PRK14532 adenylate kinase; Provisional
Probab=96.62 E-value=0.0016 Score=66.27 Aligned_cols=35 Identities=34% Similarity=0.606 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.|+|.||||+|||++|+.||+.+|+++ +++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHH
Confidence 589999999999999999999998655 45545443
No 447
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.60 E-value=0.015 Score=64.86 Aligned_cols=39 Identities=31% Similarity=0.494 Sum_probs=34.5
Q ss_pred CCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccccC
Q 003253 64 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLL 104 (836)
Q Consensus 64 ~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~~~ 104 (836)
+.+.+||-||||+ .+++|||+||+.++.++..+--++..
T Consensus 42 ~~~~vll~G~PG~--gKT~la~~lA~~l~~~~~~i~~t~~l 80 (329)
T COG0714 42 AGGHVLLEGPPGV--GKTLLARALARALGLPFVRIQCTPDL 80 (329)
T ss_pred cCCCEEEECCCCc--cHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 4678999999998 99999999999999999998866443
No 448
>PRK13948 shikimate kinase; Provisional
Probab=96.60 E-value=0.0021 Score=65.41 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 566 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 566 ~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
.+++..|+|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 345688999999999999999999999999998665
No 449
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.60 E-value=0.0063 Score=56.82 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l 593 (836)
+++++||+|+|||.++..++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888887766
No 450
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.59 E-value=0.0018 Score=64.74 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
.+|.|.|++|+|||++.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 47999999999999999999999999998776
No 451
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.56 E-value=0.02 Score=60.32 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=47.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch--------------hcc-------------------
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------KWF------------------- 610 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s--------------~~~------------------- 610 (836)
++...++++|+||+|||+++.+++.+. +.+++.++..+-.. .+.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~ 102 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNS 102 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCc
Confidence 444679999999999999999997653 55665555432100 000
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhh
Q 003253 611 GEGEKYVKAVFSLASKIAPSVIFVDEVDSML 641 (836)
Q Consensus 611 g~~e~~i~~lf~~A~~~~psIL~IDEID~L~ 641 (836)
...+..+..+........|.+|+||++..+.
T Consensus 103 ~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 103 TLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred chHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0012233444445555688999999999764
No 452
>PRK09354 recA recombinase A; Provisional
Probab=96.55 E-value=0.013 Score=65.36 Aligned_cols=75 Identities=25% Similarity=0.305 Sum_probs=49.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch----------------hcccccHHHHHHHHHHHHhcC
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 628 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s----------------~~~g~~e~~i~~lf~~A~~~~ 628 (836)
..+-++|+||+|||||+||..++.+. |...+.++...-.. ......+..+..+-..++...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~ 138 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGA 138 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 33568999999999999999876544 66677776543110 001122333333334445567
Q ss_pred CceEEEccchhhhc
Q 003253 629 PSVIFVDEVDSMLG 642 (836)
Q Consensus 629 psIL~IDEID~L~~ 642 (836)
+.+|+||-+-.|.+
T Consensus 139 ~~lIVIDSvaaL~~ 152 (349)
T PRK09354 139 VDLIVVDSVAALVP 152 (349)
T ss_pred CCEEEEeChhhhcc
Confidence 89999999999875
No 453
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.54 E-value=0.002 Score=62.22 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
|.|.|+||||||++|+.||..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987776
No 454
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.54 E-value=0.003 Score=64.01 Aligned_cols=33 Identities=39% Similarity=0.743 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 605 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l 605 (836)
.|+|.||||+||||+|+.||+. +++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHH
Confidence 5899999999999999999999 55556665444
No 455
>PRK05973 replicative DNA helicase; Provisional
Probab=96.53 E-value=0.019 Score=60.75 Aligned_cols=37 Identities=38% Similarity=0.530 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecc
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 603 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s 603 (836)
.+..-+||.|+||+|||+++-.+|... |.+++.++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 454679999999999999999887655 6666666643
No 456
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.033 Score=61.26 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhccCC----CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCC
Q 003253 275 LINTLFEVVFSESRS----CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTD 334 (836)
Q Consensus 275 ~i~~l~~~~~~~~~~----~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d 334 (836)
.++++-+++...+.. +.=||+|||+|.+- .+..+.+...++.-+.+..+|..+|.+.
T Consensus 90 ~~~~vr~~~~~~~~~~~~~~~kviiidead~mt---~~A~nallk~lEep~~~~~~il~~n~~~ 150 (325)
T COG0470 90 IVEQVRELAEFLSESPLEGGYKVVIIDEADKLT---EDAANALLKTLEEPPKNTRFILITNDPS 150 (325)
T ss_pred hHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh---HHHHHHHHHHhccCCCCeEEEEEcCChh
Confidence 444455554444334 46799999999843 3788888889988888999999888664
No 457
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.51 E-value=0.018 Score=62.01 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=27.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
.+...+|++||||+|||++|..+|... |-+++.++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 344668999999999999999987643 556555554
No 458
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.50 E-value=0.004 Score=67.20 Aligned_cols=97 Identities=22% Similarity=0.382 Sum_probs=57.3
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---Ccceee-cccc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINIS-MSSI 605 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~---~~i~v~-~s~l 605 (836)
..++++++-.....+.+.+++.... +....+++.||+|+|||++++++...... .++.+. ..++
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 3466676655555555555554211 11268999999999999999999988733 333332 1121
Q ss_pred ch------hcc-cccHHHHHHHHHHHHhcCCceEEEccch
Q 003253 606 TS------KWF-GEGEKYVKAVFSLASKIAPSVIFVDEVD 638 (836)
Q Consensus 606 ~s------~~~-g~~e~~i~~lf~~A~~~~psIL~IDEID 638 (836)
.- .+. .........++..+-+..|.+|++.||.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 00 011 1123346777788888899999999997
No 459
>PRK14531 adenylate kinase; Provisional
Probab=96.50 E-value=0.0024 Score=64.85 Aligned_cols=34 Identities=29% Similarity=0.628 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 605 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l 605 (836)
..|+++||||+|||++++.||..+|++++ ++.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~ 36 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDL 36 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccH
Confidence 36999999999999999999999987654 44444
No 460
>PF13479 AAA_24: AAA domain
Probab=96.48 E-value=0.012 Score=61.37 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=38.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCc-ceeecccc-chhc------ccccHHHHHHHHHHH--HhcCCceEEEccchh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSI-TSKW------FGEGEKYVKAVFSLA--SKIAPSVIFVDEVDS 639 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~-i~v~~s~l-~s~~------~g~~e~~i~~lf~~A--~~~~psIL~IDEID~ 639 (836)
..++|||+||+|||++|..+ +-++ +.+..... ...+ .-.+-..+...+..+ ......+|+||.++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 57999999999999999988 2221 12222210 0000 001222334444332 234668999998887
Q ss_pred hh
Q 003253 640 ML 641 (836)
Q Consensus 640 L~ 641 (836)
+.
T Consensus 80 ~~ 81 (213)
T PF13479_consen 80 LE 81 (213)
T ss_pred HH
Confidence 63
No 461
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.47 E-value=0.0089 Score=69.96 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=60.5
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CCcceee-cccc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI 605 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~---~~~i~v~-~s~l 605 (836)
..++++++-.++..+.++..+.. +..-+|++||+|+|||++.+++...+. .+++.+. +.++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 45788888778888888776642 223489999999999999998877764 3344432 1111
Q ss_pred chh-----cccc-cHHHHHHHHHHHHhcCCceEEEccch
Q 003253 606 TSK-----WFGE-GEKYVKAVFSLASKIAPSVIFVDEVD 638 (836)
Q Consensus 606 ~s~-----~~g~-~e~~i~~lf~~A~~~~psIL~IDEID 638 (836)
.-. .+.. .......+...+-+..|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 110 0111 11123445566677899999999996
No 462
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.47 E-value=0.0026 Score=64.11 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 604 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~ 604 (836)
+-|+|.|+||+|||++|++++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 46999999999999999999999988777665443
No 463
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.46 E-value=0.039 Score=61.73 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=40.1
Q ss_pred ccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhC
Q 003253 24 ESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 92 (836)
Q Consensus 24 ~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~ 92 (836)
..|..+=++ |+.|..|..++.-| ..+.|||.||+|| .+.++||++++..-
T Consensus 14 ~pf~~ivGq--~~~k~al~~~~~~p---------------~~~~vli~G~~Gt--GKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQ--EEMKLALILNVIDP---------------KIGGVMIMGDRGT--GKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhCh--HHHHHHHHHhccCC---------------CCCeEEEEcCCCC--CHHHHHHHHHHHHh
Confidence 356666667 88888888777652 3368999999999 99999999999875
No 464
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.46 E-value=0.0047 Score=69.22 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=44.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----Ccceee-ccccc---------hhcccccHHHHHHHHHHHHhcCCceEEEc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGA----NFINIS-MSSIT---------SKWFGEGEKYVKAVFSLASKIAPSVIFVD 635 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~----~~i~v~-~s~l~---------s~~~g~~e~~i~~lf~~A~~~~psIL~ID 635 (836)
..+||+||+|+|||++.+++...+.. .++.+. ..++. ..-.|.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 56999999999999999999887642 222221 11111 01112222234556666777899999999
Q ss_pred cch
Q 003253 636 EVD 638 (836)
Q Consensus 636 EID 638 (836)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 984
No 465
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.44 E-value=0.0022 Score=62.52 Aligned_cols=28 Identities=43% Similarity=0.782 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
++|+|+||+|||++|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998776543
No 466
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.43 E-value=0.023 Score=65.52 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecc
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 603 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s 603 (836)
++..++|+|++|+|||+++..+|..+ |..+..+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45789999999999999999999877 5555555553
No 467
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.036 Score=58.36 Aligned_cols=134 Identities=11% Similarity=0.061 Sum_probs=88.4
Q ss_pred CCceEEEEcCCC-ChHHHHHHHHHHHhCCC---------cceeeccccchhccc--ccHHHHHHHHHHHHhc----CCce
Q 003253 568 PCKGILLFGPPG-TGKTMLAKAVATEAGAN---------FINISMSSITSKWFG--EGEKYVKAVFSLASKI----APSV 631 (836)
Q Consensus 568 p~~~vLL~GPpG-tGKT~LA~alA~~l~~~---------~i~v~~s~l~s~~~g--~~e~~i~~lf~~A~~~----~psI 631 (836)
-.+..||.|..+ +||..++.-++..+... ++.+.... .....+ -.-..++.+-..+... ...|
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~-~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARET-SATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccc-cccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 346899999998 99999999888877332 22221110 000000 1123455555544432 4569
Q ss_pred EEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHH
Q 003253 632 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAK 711 (836)
Q Consensus 632 L~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~ 711 (836)
++|+++|.| . ....+.++..++. ++.++++|.+|..+..+.+.+++|+ ..+.++.|....-.+
T Consensus 93 iII~~ae~m-----t-------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 93 AIIYSAELM-----N-------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEEechHHh-----C-------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHH
Confidence 999999998 2 2233455555544 3466788888888999999999999 788999999888777
Q ss_pred HHHHHHhh
Q 003253 712 ILQVILAK 719 (836)
Q Consensus 712 Il~~~l~~ 719 (836)
+...++..
T Consensus 156 ~~~~~~~p 163 (263)
T PRK06581 156 LYSQFIQP 163 (263)
T ss_pred HHHHhccc
Confidence 77776543
No 468
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.41 E-value=0.0024 Score=64.94 Aligned_cols=32 Identities=41% Similarity=0.720 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCcceeecccc
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 605 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l 605 (836)
|+|+||||+|||++|+.||..++++++. +.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHH
Confidence 8999999999999999999998866544 4444
No 469
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.41 E-value=0.024 Score=59.92 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=28.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~ 602 (836)
.+..-++|.|+||+|||+++..++... +.+++.+++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 344578999999999999999887654 677777664
No 470
>PRK14530 adenylate kinase; Provisional
Probab=96.41 E-value=0.0027 Score=66.21 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.|+|.||||+|||++|+.||..++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999998776643
No 471
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.41 E-value=0.0024 Score=64.00 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=35.4
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC---cceeecccc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 605 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~---~i~v~~s~l 605 (836)
++|.++..+++...+.. .....++.++|+|++|+|||++++++...+..+ ++.+.+...
T Consensus 2 fvgR~~e~~~l~~~l~~-----------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-----------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-----------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-----------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46777777777776631 112334789999999999999999988777322 666666553
No 472
>PRK06547 hypothetical protein; Provisional
Probab=96.41 E-value=0.0031 Score=63.55 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
++.-|+|.|++|||||++|+.++..++.+++..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4467999999999999999999999887766543
No 473
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.37 E-value=0.019 Score=59.14 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=40.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc----------hhcc---------c-ccHHHHHHHHHHHH
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------SKWF---------G-EGEKYVKAVFSLAS 625 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~----------s~~~---------g-~~e~~i~~lf~~A~ 625 (836)
|+-++|.||+|+|||+.+..+|..+ +..+--+++..+. .... . .....+...++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3579999999999999888888766 3333333332210 0000 1 12223445555555
Q ss_pred hcCCceEEEccchh
Q 003253 626 KIAPSVIFVDEVDS 639 (836)
Q Consensus 626 ~~~psIL~IDEID~ 639 (836)
...-.+|+||-..+
T Consensus 81 ~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR 94 (196)
T ss_dssp HTTSSEEEEEE-SS
T ss_pred hcCCCEEEEecCCc
Confidence 55567999997653
No 474
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.34 E-value=0.0032 Score=66.46 Aligned_cols=31 Identities=35% Similarity=0.667 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..|+|.||||+|||++|+.||+.++++++.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 4599999999999999999999998766554
No 475
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.33 E-value=0.0025 Score=63.22 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
++|.||+|+|||++|+.++..++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4789999999999999999999866543
No 476
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.33 E-value=0.02 Score=59.80 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---C------CCcceeeccc
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 604 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~------~~~i~v~~s~ 604 (836)
+..-+.|+||||+|||+++..+|... + ..+++++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 44568999999999999999998664 3 5566666543
No 477
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.32 E-value=0.024 Score=62.46 Aligned_cols=101 Identities=16% Similarity=0.301 Sum_probs=57.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCCc-ceeecccc-------chhcccccHHHHHHHHHHHHhcCCceEEEccc
Q 003253 566 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSI-------TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEV 637 (836)
Q Consensus 566 ~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~-i~v~~s~l-------~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEI 637 (836)
..+++|+.|+|+-|.|||+|.-..-..+..+- .++..-.+ .....|.+ ..+..+-....+ ...||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~-~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELAA-ETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHHh-cCCEEEeeee
Confidence 45779999999999999999988877763221 11111111 01112332 111111111111 2369999999
Q ss_pred hhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC
Q 003253 638 DSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 683 (836)
Q Consensus 638 D~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~ 683 (836)
+.= +....-.+.+++.+|+ ...|.+++|+|.
T Consensus 140 ~Vt-----DI~DAMiL~rL~~~Lf----------~~GV~lvaTSN~ 170 (367)
T COG1485 140 EVT-----DIADAMILGRLLEALF----------ARGVVLVATSNT 170 (367)
T ss_pred eec-----ChHHHHHHHHHHHHHH----------HCCcEEEEeCCC
Confidence 732 3333444556666654 246899999996
No 478
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.32 E-value=0.019 Score=61.81 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCCcceeec
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 602 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~ 602 (836)
+..-++|.||||+|||+++..+|..+ +.+++.++.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44568999999999999999887654 666666654
No 479
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.32 E-value=0.015 Score=61.10 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---------CCCcceeeccc
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 604 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---------~~~~i~v~~s~ 604 (836)
++..-+.|+||||+|||+++..++... +..+++++..+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 334568999999999999999998543 25666776544
No 480
>PRK04328 hypothetical protein; Provisional
Probab=96.29 E-value=0.034 Score=59.48 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=26.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
++...+|++||||+|||.|+..++.+. |-+.+.++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 445679999999999999999876542 445554443
No 481
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.0031 Score=61.94 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
-|-+.||||||||++|+.||..+|.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 36789999999999999999999999875
No 482
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.28 E-value=0.0037 Score=62.44 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
..++|+|++|+|||++++.+|..+|++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999987654
No 483
>PRK10436 hypothetical protein; Provisional
Probab=96.27 E-value=0.014 Score=67.82 Aligned_cols=94 Identities=18% Similarity=0.283 Sum_probs=61.3
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC---cceee-cccc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINIS-MSSI 605 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~---~i~v~-~s~l 605 (836)
..++++++-.+...+.+++.+. .+..-+|++||+|+|||++..++..++..+ ++.+- +.++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~---------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQ---------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHH---------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 4578888877777777877664 233469999999999999988877776432 33322 1121
Q ss_pred chh-----cccc-cHHHHHHHHHHHHhcCCceEEEccch
Q 003253 606 TSK-----WFGE-GEKYVKAVFSLASKIAPSVIFVDEVD 638 (836)
Q Consensus 606 ~s~-----~~g~-~e~~i~~lf~~A~~~~psIL~IDEID 638 (836)
.-. .++. ...........+-+..|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 100 1111 11234556667778899999999996
No 484
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.24 E-value=0.021 Score=71.61 Aligned_cols=138 Identities=20% Similarity=0.296 Sum_probs=81.1
Q ss_pred CceEEEEcCCCChHHHH-HHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhc--------------CCceEE
Q 003253 569 CKGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI--------------APSVIF 633 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~L-A~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~--------------~psIL~ 633 (836)
.++++++||||+|||+| ..++-.++-..|+.++.+.- ..++..+..+-...... .-.|||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~-----t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLF 1568 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTC-----TMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLF 1568 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccc-----cCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEE
Confidence 37999999999999995 56777777777777765431 11222222222211111 114999
Q ss_pred EccchhhhcCCCC---CchHHHHHHHHHH------HHHHhcCCcccCcccEEEEeccCCCCCC-----cHHHHhhccccc
Q 003253 634 VDEVDSMLGRREN---PGEHEAMRKMKNE------FMVNWDGLRTKDTERILVLAATNRPFDL-----DEAVIRRLPRRL 699 (836)
Q Consensus 634 IDEID~L~~~r~~---~~~~~~~~~il~~------ll~~ld~~~~~~~~~vlVIaTTn~~~~L-----d~~l~rRf~~~I 699 (836)
.|||. | +.... +..--+++.++.. +-+.|..+ .++++.|++|.+.+. .+.++|+= ..+
T Consensus 1569 cDeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-----~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~v 1640 (3164)
T COG5245 1569 CDEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-----CGIILYGACNPGTDEGRVKYYERFIRKP-VFV 1640 (3164)
T ss_pred eeccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHhhh-----cceEEEccCCCCCCcccCccHHHHhcCc-eEE
Confidence 99999 3 32221 1111223333322 12222221 578999999987654 34555543 456
Q ss_pred cCCCCCHHHHHHHHHHHHhh
Q 003253 700 MVNLPDAPNRAKILQVILAK 719 (836)
Q Consensus 700 ~v~~P~~~eR~~Il~~~l~~ 719 (836)
.+..|.......|...++..
T Consensus 1641 f~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EecCcchhhHHHHHHHHHHH
Confidence 77899988888888877754
No 485
>PRK13946 shikimate kinase; Provisional
Probab=96.24 E-value=0.0038 Score=63.52 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
..|+|.|++|+|||++++.||+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999988766
No 486
>PRK14528 adenylate kinase; Provisional
Probab=96.24 E-value=0.0042 Score=63.38 Aligned_cols=30 Identities=37% Similarity=0.630 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
+.+++.||||+|||++|+.+|..++++++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999877654
No 487
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.23 E-value=0.036 Score=57.89 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVAT 591 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~ 591 (836)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999984
No 488
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.22 E-value=0.015 Score=64.72 Aligned_cols=69 Identities=25% Similarity=0.379 Sum_probs=46.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--Cccee-eccccc-----------hhc--ccccHHHHHHHHHHHHhcCCceEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGA--NFINI-SMSSIT-----------SKW--FGEGEKYVKAVFSLASKIAPSVIF 633 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~--~~i~v-~~s~l~-----------s~~--~g~~e~~i~~lf~~A~~~~psIL~ 633 (836)
.++|++|++|+|||+++++++..... .++.+ +..++. ... .|...-....++..+-+..|..|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 57999999999999999999987742 22222 111111 000 112222456788888899999999
Q ss_pred Eccch
Q 003253 634 VDEVD 638 (836)
Q Consensus 634 IDEID 638 (836)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99996
No 489
>PRK13764 ATPase; Provisional
Probab=96.19 E-value=0.0077 Score=71.66 Aligned_cols=68 Identities=22% Similarity=0.355 Sum_probs=41.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CCcceee-cccc-----chhcccccHHHHHHHHHHHHhcCCceEEEccch
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI-----TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVD 638 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~---~~~i~v~-~s~l-----~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID 638 (836)
.++|++||||||||+++++++..+. ..+..+. ..++ ...+. ............+-+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998874 2222221 1121 11111 000112223333356789999999986
No 490
>PRK08233 hypothetical protein; Provisional
Probab=96.19 E-value=0.025 Score=56.70 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CCcceee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG-ANFINIS 601 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~-~~~i~v~ 601 (836)
.-|.|.|+||+||||+|+.|+..++ .+++.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 4588899999999999999999985 4344343
No 491
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.18 E-value=0.0044 Score=62.37 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=29.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeec
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 602 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~ 602 (836)
..|+|.|++|+|||++++.+|..++++++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999988877653
No 492
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.036 Score=62.56 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=44.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc----hh---c---------ccccHHHHHHHHHHHHh-cC
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SK---W---------FGEGEKYVKAVFSLASK-IA 628 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~----s~---~---------~g~~e~~i~~lf~~A~~-~~ 628 (836)
++.++|.||+|+|||+++..||..+ +..+..+++.... .. | ....+..+......+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3679999999999999999999877 3444444442211 00 0 11233344444444443 24
Q ss_pred CceEEEccchhh
Q 003253 629 PSVIFVDEVDSM 640 (836)
Q Consensus 629 psIL~IDEID~L 640 (836)
..+||||-..+.
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 578999977654
No 493
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.18 E-value=0.0085 Score=67.62 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=45.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CCcceeec-cccc-----------hhcccccHHHHHHHHHHHHhcCCceE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISM-SSIT-----------SKWFGEGEKYVKAVFSLASKIAPSVI 632 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~-----~~~i~v~~-s~l~-----------s~~~g~~e~~i~~lf~~A~~~~psIL 632 (836)
..+|++||+|+|||+++++++.... ..++.+.- .++. ...+|............+-+..|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 3689999999999999999988762 23343321 1211 01112222234556677778899999
Q ss_pred EEccch
Q 003253 633 FVDEVD 638 (836)
Q Consensus 633 ~IDEID 638 (836)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999996
No 494
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.17 E-value=0.0076 Score=66.20 Aligned_cols=69 Identities=26% Similarity=0.382 Sum_probs=46.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CCcceeec-ccc-------chhcccccHHHHHHHHHHHHhcCCceEEEcc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISM-SSI-------TSKWFGEGEKYVKAVFSLASKIAPSVIFVDE 636 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~-----~~~i~v~~-s~l-------~s~~~g~~e~~i~~lf~~A~~~~psIL~IDE 636 (836)
.++|++||+|+|||+++++++..+. ..++.+.- .++ +.-..+........++..+-+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5899999999999999999998862 22222211 111 1101111122466788888889999999999
Q ss_pred ch
Q 003253 637 VD 638 (836)
Q Consensus 637 ID 638 (836)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 86
No 495
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.17 E-value=0.0092 Score=63.67 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=27.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCCcceeecccc
Q 003253 572 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 605 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l 605 (836)
|+|+|+||+|||++|++++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 456666655433
No 496
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.17 E-value=0.012 Score=57.81 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=27.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCCcceeeccc
Q 003253 572 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 604 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~ 604 (836)
++|+|+||+|||++|+.++..+ +.+.+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 7899999999999999999998 66666666443
No 497
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.15 E-value=0.014 Score=69.78 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=64.0
Q ss_pred cCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---Ccce
Q 003253 523 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFIN 599 (836)
Q Consensus 523 ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~---~~i~ 599 (836)
+++......++++++-.+...+.+.+.+.. +..-||++||+|+|||++..++...++- +++.
T Consensus 285 ll~~~~~~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~t 349 (564)
T TIGR02538 285 ILDSSAAQLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNIST 349 (564)
T ss_pred eecCccccCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEE
Confidence 333333345788888888888888776652 2246899999999999999888877742 2333
Q ss_pred eecc-ccc-----hhccc-ccHHHHHHHHHHHHhcCCceEEEccch
Q 003253 600 ISMS-SIT-----SKWFG-EGEKYVKAVFSLASKIAPSVIFVDEVD 638 (836)
Q Consensus 600 v~~s-~l~-----s~~~g-~~e~~i~~lf~~A~~~~psIL~IDEID 638 (836)
+--+ ++. ...+. ........+...+-+..|.||++.||.
T Consensus 350 iEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 350 AEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred ecCCceecCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 2111 111 00011 111234556677778899999999996
No 498
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.15 E-value=0.014 Score=62.19 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=62.8
Q ss_pred HHHHHHHHHcccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHH
Q 003253 5 CAVFREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLA 84 (836)
Q Consensus 5 ~~~~~~~~~~~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~ 84 (836)
+...+.-+.+..+++..-+-|||+|-.. ++..+.++..|.-+ ..+.....+.++|+||+|| +++.|+
T Consensus 50 q~~~~~~~~~s~i~~~~~~~tFdnf~~~-~~~q~~al~~a~~~----------~~~~~~~~~~~~l~G~~Gt--GKThLa 116 (244)
T PRK07952 50 AMKMQRTFNRSGIRPLHQNCSFENYRVE-CEGQMNALSKARQY----------VEEFDGNIASFIFSGKPGT--GKNHLA 116 (244)
T ss_pred HHHHHHHHHHcCCCccccCCccccccCC-CchHHHHHHHHHHH----------HHhhccCCceEEEECCCCC--CHHHHH
Confidence 4445566778888999899999999654 34444454443322 1222222458999999999 999999
Q ss_pred HHHHhHh---CCeEEEEeccccCC
Q 003253 85 KALAHYF---GAKLLIFDSHSLLG 105 (836)
Q Consensus 85 kala~~~---~~~ll~~d~~~~~~ 105 (836)
.|+|+++ |.+.+.++..+|..
T Consensus 117 ~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 117 AAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred HHHHHHHHhcCCeEEEEEHHHHHH
Confidence 9999998 77888888766654
No 499
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.14 E-value=0.024 Score=58.52 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=20.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVAT 591 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~ 591 (836)
..++|+||.|+|||++.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5699999999999999999983
No 500
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.13 E-value=0.047 Score=57.13 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=28.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecc
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 603 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s 603 (836)
++...++|.|+||+|||.++..++... +-+++.++..
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 344679999999999999999887653 6666666553
Done!