Query 003253
Match_columns 836
No_of_seqs 645 out of 3997
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 18:46:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2.3E-71 7.9E-76 666.3 21.2 545 22-823 199-764 (806)
2 1ypw_A Transitional endoplasmi 100.0 1.7E-48 5.9E-53 475.1 15.7 545 22-822 199-763 (806)
3 4b4t_J 26S protease regulatory 100.0 3.6E-43 1.2E-47 391.2 24.0 251 528-807 142-396 (405)
4 4b4t_H 26S protease regulatory 100.0 7.4E-42 2.5E-46 384.9 24.5 261 528-818 203-467 (467)
5 4b4t_I 26S protease regulatory 100.0 3.8E-42 1.3E-46 383.8 21.6 252 528-808 176-431 (437)
6 4b4t_M 26S protease regulatory 100.0 1.5E-41 5.2E-46 383.4 23.7 252 527-807 174-429 (434)
7 4b4t_L 26S protease subunit RP 100.0 2.5E-41 8.6E-46 381.9 22.3 251 528-807 175-429 (437)
8 4b4t_K 26S protease regulatory 100.0 5.8E-40 2E-44 370.2 25.2 250 528-806 166-421 (428)
9 3cf2_A TER ATPase, transitiona 100.0 2E-39 6.9E-44 389.7 9.3 288 529-829 199-488 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.5E-36 8.7E-41 331.4 28.0 289 529-825 7-322 (322)
11 3eie_A Vacuolar protein sortin 100.0 1.2E-35 4.2E-40 325.7 25.2 293 528-826 12-322 (322)
12 2qp9_X Vacuolar protein sortin 100.0 4.3E-35 1.5E-39 325.8 24.7 297 524-826 41-355 (355)
13 2zan_A Vacuolar protein sortin 100.0 1.9E-34 6.4E-39 329.9 20.9 295 523-825 123-444 (444)
14 3cf0_A Transitional endoplasmi 100.0 3.2E-34 1.1E-38 311.6 19.0 287 529-821 10-300 (301)
15 3d8b_A Fidgetin-like protein 1 100.0 6.9E-33 2.4E-37 308.3 23.9 277 529-824 79-356 (357)
16 3hu3_A Transitional endoplasmi 100.0 2E-33 6.9E-38 324.0 18.1 281 530-825 200-484 (489)
17 2x8a_A Nuclear valosin-contain 100.0 3.8E-33 1.3E-37 299.2 19.0 261 529-808 5-272 (274)
18 3b9p_A CG5977-PA, isoform A; A 100.0 5.9E-32 2E-36 292.1 19.8 278 528-824 15-294 (297)
19 4b4t_J 26S protease regulatory 100.0 3.3E-32 1.1E-36 303.1 16.5 212 22-448 143-367 (405)
20 3vfd_A Spastin; ATPase, microt 100.0 8.7E-31 3E-35 294.5 24.2 277 529-824 110-387 (389)
21 4b4t_I 26S protease regulatory 100.0 2.2E-31 7.6E-36 297.1 18.2 214 20-448 175-401 (437)
22 3h4m_A Proteasome-activating n 100.0 2.3E-30 7.9E-35 277.7 23.8 269 529-826 12-284 (285)
23 2ce7_A Cell division protein F 100.0 2.4E-30 8.3E-35 296.3 23.7 265 528-822 10-282 (476)
24 4b4t_M 26S protease regulatory 100.0 7.7E-31 2.6E-35 296.1 15.0 214 20-448 174-400 (434)
25 4b4t_L 26S protease subunit RP 100.0 1.8E-30 6.2E-35 293.3 14.9 214 20-448 174-400 (437)
26 1lv7_A FTSH; alpha/beta domain 100.0 4.4E-29 1.5E-33 264.2 24.1 246 528-803 6-255 (257)
27 4b4t_H 26S protease regulatory 100.0 4.9E-30 1.7E-34 288.8 15.5 213 20-448 202-428 (467)
28 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.7E-29 9.2E-34 265.4 15.6 249 530-808 2-257 (262)
29 4b4t_K 26S protease regulatory 100.0 2E-29 7E-34 284.3 15.2 213 20-448 165-392 (428)
30 3pxi_A Negative regulator of g 100.0 4.5E-28 1.5E-32 294.8 28.1 399 275-757 255-727 (758)
31 1r6b_X CLPA protein; AAA+, N-t 100.0 3.1E-28 1.1E-32 296.2 24.0 379 273-757 264-718 (758)
32 2dhr_A FTSH; AAA+ protein, hex 100.0 1.5E-28 5.2E-33 283.0 19.6 264 529-822 26-297 (499)
33 1qvr_A CLPB protein; coiled co 99.9 4.4E-26 1.5E-30 280.5 34.0 208 534-758 558-823 (854)
34 1ixz_A ATP-dependent metallopr 99.9 1E-26 3.4E-31 245.7 21.5 241 527-797 9-253 (254)
35 2r62_A Cell division protease 99.9 2.5E-29 8.7E-34 267.4 0.4 253 526-807 3-260 (268)
36 1iy2_A ATP-dependent metallopr 99.9 2.6E-25 8.8E-30 238.4 24.5 239 529-797 35-277 (278)
37 1ypw_A Transitional endoplasmi 99.9 1.8E-26 6E-31 281.4 11.4 287 529-828 199-487 (806)
38 3t15_A Ribulose bisphosphate c 99.9 1.2E-22 4.3E-27 219.6 12.0 174 566-745 33-222 (293)
39 1xwi_A SKD1 protein; VPS4B, AA 99.9 3.5E-21 1.2E-25 211.0 19.1 211 20-448 5-228 (322)
40 2x8a_A Nuclear valosin-contain 99.9 2.9E-21 9.9E-26 206.9 15.6 215 22-448 5-231 (274)
41 3cf0_A Transitional endoplasmi 99.8 4.9E-21 1.7E-25 207.7 12.3 214 20-449 8-235 (301)
42 2qp9_X Vacuolar protein sortin 99.8 4.3E-20 1.5E-24 205.0 16.2 217 15-448 39-266 (355)
43 3eie_A Vacuolar protein sortin 99.8 7.4E-20 2.5E-24 200.3 16.7 211 20-448 11-233 (322)
44 2zan_A Vacuolar protein sortin 99.8 1.3E-19 4.4E-24 207.1 15.9 216 16-448 123-350 (444)
45 3hu3_A Transitional endoplasmi 99.8 1.3E-18 4.3E-23 200.7 21.2 207 23-444 200-416 (489)
46 2ce7_A Cell division protein F 99.8 6.5E-19 2.2E-23 201.8 18.0 215 15-445 3-231 (476)
47 3syl_A Protein CBBX; photosynt 99.8 6.9E-19 2.3E-23 190.4 17.1 215 535-760 32-268 (309)
48 2c9o_A RUVB-like 1; hexameric 99.8 5.1E-21 1.7E-25 219.5 -3.2 203 528-749 31-262 (456)
49 2c9o_A RUVB-like 1; hexameric 99.8 7.7E-19 2.6E-23 201.3 13.9 127 630-800 297-437 (456)
50 1lv7_A FTSH; alpha/beta domain 99.8 5.5E-18 1.9E-22 178.9 17.7 212 17-444 2-226 (257)
51 3uk6_A RUVB-like 2; hexameric 99.8 9.1E-18 3.1E-22 186.1 20.0 219 530-800 40-330 (368)
52 1ofh_A ATP-dependent HSL prote 99.8 4.2E-18 1.4E-22 183.6 16.2 247 535-801 16-300 (310)
53 3h4m_A Proteasome-activating n 99.8 7.4E-18 2.5E-22 180.3 16.6 233 21-490 11-256 (285)
54 2qz4_A Paraplegin; AAA+, SPG7, 99.7 1.8E-17 6.2E-22 174.6 17.9 209 23-446 2-225 (262)
55 3pfi_A Holliday junction ATP-d 99.7 4.2E-17 1.4E-21 178.9 20.2 194 531-754 26-234 (338)
56 3b9p_A CG5977-PA, isoform A; A 99.7 7.3E-17 2.5E-21 173.7 19.8 222 9-448 4-238 (297)
57 3d8b_A Fidgetin-like protein 1 99.7 5.5E-17 1.9E-21 180.1 19.1 222 9-448 67-300 (357)
58 2dhr_A FTSH; AAA+ protein, hex 99.7 1.5E-17 5.2E-22 191.5 15.0 211 16-444 21-245 (499)
59 1d2n_A N-ethylmaleimide-sensit 99.7 1.5E-17 5.2E-22 177.2 12.9 177 567-752 62-247 (272)
60 3hws_A ATP-dependent CLP prote 99.7 2.9E-17 9.9E-22 182.5 13.1 222 536-757 17-325 (363)
61 3vfd_A Spastin; ATPase, microt 99.7 1.1E-16 3.7E-21 179.7 17.0 84 14-105 103-186 (389)
62 3m6a_A ATP-dependent protease 99.7 2E-17 6.9E-22 193.4 10.0 232 532-801 79-342 (543)
63 2r62_A Cell division protease 99.7 4.2E-18 1.4E-22 180.7 3.3 80 17-103 1-80 (268)
64 1hqc_A RUVB; extended AAA-ATPa 99.7 2.6E-16 8.7E-21 171.2 13.7 201 531-753 9-217 (324)
65 2z4s_A Chromosomal replication 99.7 2.7E-15 9.2E-20 171.1 21.4 220 530-802 101-334 (440)
66 1g41_A Heat shock protein HSLU 99.7 2.5E-15 8.6E-20 170.0 20.0 180 535-714 16-346 (444)
67 1ixz_A ATP-dependent metallopr 99.6 8.4E-16 2.9E-20 161.8 14.8 125 273-445 94-231 (254)
68 3pvs_A Replication-associated 99.6 1.7E-15 5.7E-20 172.9 17.6 211 531-806 23-250 (447)
69 2chg_A Replication factor C sm 99.6 5.5E-15 1.9E-19 149.9 19.2 199 531-798 14-224 (226)
70 1l8q_A Chromosomal replication 99.6 6.3E-15 2.2E-19 160.9 20.7 196 530-753 7-214 (324)
71 2v1u_A Cell division control p 99.6 9.7E-15 3.3E-19 161.8 21.8 224 533-802 18-278 (387)
72 3bos_A Putative DNA replicatio 99.6 1.2E-14 4.2E-19 149.9 21.2 205 530-798 24-241 (242)
73 4fcw_A Chaperone protein CLPB; 99.6 6.4E-16 2.2E-20 167.0 11.6 208 535-759 18-283 (311)
74 1njg_A DNA polymerase III subu 99.6 1.5E-14 5.2E-19 148.3 19.5 190 531-751 20-232 (250)
75 3t15_A Ribulose bisphosphate c 99.6 1.1E-15 3.9E-20 165.0 11.3 118 273-441 81-222 (293)
76 3pxg_A Negative regulator of g 99.6 2.5E-15 8.6E-20 172.7 13.6 183 531-753 177-384 (468)
77 2r44_A Uncharacterized protein 99.6 1.9E-15 6.6E-20 165.3 11.9 165 533-720 26-201 (331)
78 1jbk_A CLPB protein; beta barr 99.6 8.2E-16 2.8E-20 152.3 7.9 158 531-713 19-194 (195)
79 1g8p_A Magnesium-chelatase 38 99.6 5.8E-15 2E-19 162.1 15.4 166 530-717 20-232 (350)
80 1r6b_X CLPA protein; AAA+, N-t 99.6 4.3E-15 1.5E-19 180.6 15.0 224 532-801 184-434 (758)
81 1iy2_A ATP-dependent metallopr 99.6 5.2E-15 1.8E-19 158.2 13.6 124 273-444 118-254 (278)
82 2qby_B CDC6 homolog 3, cell di 99.6 2.1E-14 7E-19 159.6 18.0 195 533-753 19-251 (384)
83 1um8_A ATP-dependent CLP prote 99.6 7.5E-15 2.6E-19 163.8 14.2 223 535-757 22-342 (376)
84 3u61_B DNA polymerase accessor 99.6 1.4E-14 4.9E-19 157.8 15.5 184 531-751 23-220 (324)
85 1sxj_D Activator 1 41 kDa subu 99.5 8E-14 2.7E-18 153.0 18.0 184 531-752 34-240 (353)
86 1sxj_A Activator 1 95 kDa subu 99.5 3E-14 1E-18 165.8 15.2 192 531-737 36-243 (516)
87 2qby_A CDC6 homolog 1, cell di 99.5 1.6E-13 5.4E-18 151.7 19.5 202 531-754 17-252 (386)
88 1fnn_A CDC6P, cell division co 99.5 3.7E-13 1.3E-17 149.5 22.3 203 533-755 16-255 (389)
89 1in4_A RUVB, holliday junction 99.5 5.2E-13 1.8E-17 146.7 23.1 196 531-754 22-230 (334)
90 1qvr_A CLPB protein; coiled co 99.5 1.8E-14 6.1E-19 177.3 12.6 200 531-755 167-393 (854)
91 2p65_A Hypothetical protein PF 99.5 1.5E-14 5.1E-19 143.1 8.8 150 531-705 19-187 (187)
92 3te6_A Regulatory protein SIR3 99.5 2.6E-13 8.9E-18 147.6 18.3 160 536-720 22-214 (318)
93 3pxi_A Negative regulator of g 99.5 4.3E-14 1.5E-18 171.8 13.6 184 531-754 177-385 (758)
94 1sxj_B Activator 1 37 kDa subu 99.5 3.7E-13 1.3E-17 145.5 18.5 183 531-751 18-213 (323)
95 1jr3_A DNA polymerase III subu 99.5 3.3E-13 1.1E-17 149.2 17.7 191 531-752 13-226 (373)
96 2chq_A Replication factor C sm 99.5 1.6E-13 5.6E-18 148.0 14.4 187 531-751 14-208 (319)
97 2bjv_A PSP operon transcriptio 99.5 1.1E-13 3.9E-18 146.4 11.8 201 531-752 3-238 (265)
98 1iqp_A RFCS; clamp loader, ext 99.5 4.7E-13 1.6E-17 145.0 16.8 183 531-751 22-216 (327)
99 1ojl_A Transcriptional regulat 99.4 8.3E-14 2.8E-18 151.1 8.2 191 535-753 3-234 (304)
100 1sxj_E Activator 1 40 kDa subu 99.4 2.5E-12 8.4E-17 141.5 16.9 186 531-752 11-242 (354)
101 3f9v_A Minichromosome maintena 99.4 5.5E-14 1.9E-18 165.9 2.7 173 535-720 296-493 (595)
102 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 2.4E-13 8.1E-18 156.8 5.6 160 535-717 23-196 (500)
103 1sxj_C Activator 1 40 kDa subu 99.3 3.1E-11 1.1E-15 132.5 18.5 170 531-737 22-203 (340)
104 3n70_A Transport activator; si 99.3 1.9E-12 6.5E-17 124.7 7.2 131 535-704 2-142 (145)
105 3co5_A Putative two-component 99.3 9.1E-13 3.1E-17 126.8 3.0 131 535-704 5-140 (143)
106 1a5t_A Delta prime, HOLB; zinc 99.2 9.7E-11 3.3E-15 128.5 17.5 178 537-749 5-207 (334)
107 1g41_A Heat shock protein HSLU 99.2 1.9E-12 6.6E-17 146.4 2.8 84 17-105 4-88 (444)
108 3syl_A Protein CBBX; photosynt 99.2 5.6E-11 1.9E-15 128.1 9.8 84 290-411 130-219 (309)
109 3k1j_A LON protease, ATP-depen 99.2 7.6E-11 2.6E-15 139.6 11.6 222 531-799 38-374 (604)
110 1w5s_A Origin recognition comp 99.1 6.5E-10 2.2E-14 124.3 18.0 206 533-754 21-273 (412)
111 3vlf_B 26S protease regulatory 99.1 1.1E-10 3.7E-15 103.0 9.2 87 705-818 2-88 (88)
112 2gno_A DNA polymerase III, gam 99.1 7.1E-10 2.4E-14 120.2 15.4 142 538-717 1-152 (305)
113 3cmw_A Protein RECA, recombina 99.1 1.4E-10 4.6E-15 148.7 10.2 153 528-683 1014-1217(1706)
114 4akg_A Glutathione S-transfera 99.1 5.6E-09 1.9E-13 139.4 25.5 70 567-638 1607-1677(2695)
115 2krk_A 26S protease regulatory 99.1 1.6E-10 5.4E-15 101.4 7.3 78 700-803 7-84 (86)
116 3kw6_A 26S protease regulatory 99.1 2.8E-10 9.4E-15 98.0 8.4 75 702-802 1-75 (78)
117 1ny5_A Transcriptional regulat 99.0 5.7E-10 1.9E-14 125.0 10.1 175 570-753 161-369 (387)
118 3aji_B S6C, proteasome (prosom 99.0 8.9E-10 3E-14 95.9 7.0 75 705-805 2-76 (83)
119 3pxg_A Negative regulator of g 98.9 3.3E-09 1.1E-13 121.8 10.5 85 276-411 256-340 (468)
120 1ofh_A ATP-dependent HSL prote 98.9 3.5E-09 1.2E-13 113.6 10.1 83 18-105 5-88 (310)
121 1jbk_A CLPB protein; beta barr 98.9 2.6E-09 9E-14 105.2 8.3 90 273-405 100-194 (195)
122 3hws_A ATP-dependent CLP prote 98.9 3.4E-09 1.2E-13 117.4 10.1 82 19-104 6-88 (363)
123 3dzd_A Transcriptional regulat 98.9 1.7E-09 5.8E-14 120.3 6.9 174 570-752 153-359 (368)
124 3m6a_A ATP-dependent protease 98.9 8.4E-09 2.9E-13 120.5 12.9 35 64-100 107-141 (543)
125 3cmw_A Protein RECA, recombina 98.8 1.1E-07 3.6E-12 122.3 22.3 76 570-645 1432-1526(1706)
126 4akg_A Glutathione S-transfera 98.8 8.4E-09 2.9E-13 137.8 12.2 139 570-719 1268-1433(2695)
127 1d2n_A N-ethylmaleimide-sensit 98.8 3.3E-08 1.1E-12 104.8 13.8 36 63-100 62-97 (272)
128 3ec2_A DNA replication protein 98.8 1.1E-08 3.9E-13 101.3 9.1 98 530-640 6-112 (180)
129 3f8t_A Predicted ATPase involv 98.8 1.1E-08 3.8E-13 115.3 9.0 153 536-708 215-385 (506)
130 3pfi_A Holliday junction ATP-d 98.7 2E-07 7E-12 101.6 18.1 62 25-100 27-88 (338)
131 1sxj_A Activator 1 95 kDa subu 98.7 1.6E-07 5.4E-12 109.1 17.3 78 24-105 36-115 (516)
132 2kjq_A DNAA-related protein; s 98.7 3.9E-08 1.3E-12 95.1 9.7 106 569-703 36-147 (149)
133 1um8_A ATP-dependent CLP prote 98.7 2.6E-08 9.1E-13 110.7 9.5 86 14-103 7-108 (376)
134 3uk6_A RUVB-like 2; hexameric 98.7 3.7E-07 1.3E-11 100.6 18.7 68 24-105 41-110 (368)
135 3u61_B DNA polymerase accessor 98.7 2.8E-07 9.7E-12 99.9 16.7 59 24-100 23-81 (324)
136 2chg_A Replication factor C sm 98.7 8.4E-07 2.9E-11 89.1 18.8 75 289-410 101-175 (226)
137 2p65_A Hypothetical protein PF 98.6 3.2E-08 1.1E-12 97.2 7.5 82 273-397 100-187 (187)
138 2dzn_B 26S protease regulatory 98.6 7.4E-09 2.5E-13 89.9 2.1 75 707-807 1-76 (82)
139 2fna_A Conserved hypothetical 98.6 3.4E-07 1.2E-11 99.6 15.9 186 531-749 10-252 (357)
140 2w58_A DNAI, primosome compone 98.6 6.6E-08 2.3E-12 97.4 8.6 99 530-640 21-127 (202)
141 2qen_A Walker-type ATPase; unk 98.6 1.4E-06 4.9E-11 94.5 17.9 189 531-748 9-247 (350)
142 4fcw_A Chaperone protein CLPB; 98.5 1.7E-06 6E-11 92.7 16.2 105 289-414 118-234 (311)
143 2vhj_A Ntpase P4, P4; non- hyd 98.5 9.9E-08 3.4E-12 103.2 6.3 111 570-689 124-240 (331)
144 1hqc_A RUVB; extended AAA-ATPa 98.5 6.2E-07 2.1E-11 96.9 12.6 62 25-100 10-71 (324)
145 2r44_A Uncharacterized protein 98.5 2.5E-06 8.6E-11 92.7 16.5 33 66-100 47-79 (331)
146 2v1u_A Cell division control p 98.4 2.1E-06 7.3E-11 94.4 15.2 96 273-410 115-215 (387)
147 1njg_A DNA polymerase III subu 98.4 5.3E-06 1.8E-10 84.2 16.0 75 289-410 125-199 (250)
148 1l8q_A Chromosomal replication 98.4 1.4E-06 4.7E-11 94.6 11.9 38 64-103 36-76 (324)
149 2qby_B CDC6 homolog 3, cell di 98.4 7.8E-06 2.7E-10 90.2 17.7 91 273-410 120-211 (384)
150 3pvs_A Replication-associated 98.3 1.5E-06 5.1E-11 99.0 11.8 76 289-411 105-180 (447)
151 3te6_A Regulatory protein SIR3 98.3 4.2E-06 1.4E-10 90.8 14.4 97 273-411 116-213 (318)
152 2r2a_A Uncharacterized protein 98.3 5.6E-07 1.9E-11 91.3 6.0 128 570-707 6-156 (199)
153 2qgz_A Helicase loader, putati 98.3 5.7E-07 2E-11 97.4 5.8 70 569-640 152-226 (308)
154 1g8p_A Magnesium-chelatase 38 98.3 8.2E-06 2.8E-10 88.9 14.6 52 23-93 20-71 (350)
155 1tue_A Replication protein E1; 98.2 4.5E-06 1.5E-10 84.5 10.3 30 570-599 59-88 (212)
156 1sxj_B Activator 1 37 kDa subu 98.2 1.6E-05 5.5E-10 85.3 14.9 75 289-410 106-180 (323)
157 2chq_A Replication factor C sm 98.2 4.9E-06 1.7E-10 89.1 10.8 75 289-410 101-175 (319)
158 2z4s_A Chromosomal replication 98.2 1.2E-06 4E-11 99.7 5.5 80 290-411 194-278 (440)
159 1jr3_A DNA polymerase III subu 98.1 3.3E-05 1.1E-09 84.8 15.9 76 289-411 118-193 (373)
160 2qby_A CDC6 homolog 1, cell di 98.1 6.9E-05 2.4E-09 82.1 17.8 95 273-409 113-210 (386)
161 3bos_A Putative DNA replicatio 98.0 3.5E-05 1.2E-09 78.6 13.5 52 24-92 25-77 (242)
162 1sxj_D Activator 1 41 kDa subu 98.0 9.3E-05 3.2E-09 80.5 17.7 74 290-410 133-206 (353)
163 1iqp_A RFCS; clamp loader, ext 98.0 3.3E-05 1.1E-09 83.0 12.8 74 289-409 109-182 (327)
164 3vkg_A Dynein heavy chain, cyt 98.0 8.3E-06 2.8E-10 110.1 8.9 139 570-719 1305-1471(3245)
165 1u0j_A DNA replication protein 98.0 7.4E-06 2.5E-10 86.4 6.6 27 569-595 104-130 (267)
166 3vkg_A Dynein heavy chain, cyt 97.9 3.7E-05 1.3E-09 103.9 14.1 132 570-714 605-750 (3245)
167 2bjv_A PSP operon transcriptio 97.9 0.00015 5.3E-09 75.9 15.0 65 23-104 2-69 (265)
168 3cmu_A Protein RECA, recombina 97.9 2.2E-05 7.7E-10 102.2 9.9 113 566-680 1424-1560(2050)
169 1jr3_D DNA polymerase III, del 97.8 0.00016 5.5E-09 78.9 14.9 156 570-751 19-189 (343)
170 1fnn_A CDC6P, cell division co 97.8 0.00013 4.3E-09 80.4 13.8 93 273-410 110-207 (389)
171 3nbx_X ATPase RAVA; AAA+ ATPas 97.8 9.6E-05 3.3E-09 85.1 13.2 27 65-93 41-67 (500)
172 1sxj_E Activator 1 40 kDa subu 97.7 0.00054 1.8E-08 74.7 17.1 76 289-411 133-208 (354)
173 1ye8_A Protein THEP1, hypothet 97.7 0.00012 4.3E-09 72.5 10.6 26 571-596 2-27 (178)
174 3n70_A Transport activator; si 97.7 3.5E-05 1.2E-09 73.6 5.7 36 62-100 21-59 (145)
175 1a5t_A Delta prime, HOLB; zinc 97.7 0.00033 1.1E-08 76.3 13.9 86 276-408 93-179 (334)
176 3co5_A Putative two-component 97.6 1.8E-05 6.2E-10 75.4 2.7 34 63-99 25-58 (143)
177 3kw6_A 26S protease regulatory 97.4 6.1E-05 2.1E-09 64.3 3.2 51 394-448 1-51 (78)
178 2gno_A DNA polymerase III, gam 97.4 0.001 3.4E-08 71.8 13.5 85 276-409 67-152 (305)
179 2krk_A 26S protease regulatory 97.4 5.5E-05 1.9E-09 66.0 2.9 52 393-448 8-59 (86)
180 1in4_A RUVB, holliday junction 97.4 0.0015 5.1E-08 71.2 14.4 30 65-96 51-80 (334)
181 1sxj_C Activator 1 40 kDa subu 97.3 0.0022 7.7E-08 69.7 15.1 73 290-409 110-182 (340)
182 1svm_A Large T antigen; AAA+ f 97.3 9.6E-05 3.3E-09 82.1 3.7 113 567-701 167-282 (377)
183 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.00087 3E-08 67.9 10.6 34 568-601 22-58 (235)
184 2r8r_A Sensor protein; KDPD, P 97.3 0.0029 9.8E-08 65.0 14.0 161 570-754 7-208 (228)
185 1ojl_A Transcriptional regulat 97.2 0.00038 1.3E-08 75.0 6.8 40 63-104 23-65 (304)
186 1xp8_A RECA protein, recombina 97.2 0.0011 3.8E-08 73.3 10.6 76 567-642 72-166 (366)
187 3f9v_A Minichromosome maintena 97.2 0.001 3.5E-08 78.3 10.8 27 67-95 329-355 (595)
188 3hr8_A Protein RECA; alpha and 97.2 0.001 3.6E-08 73.1 10.0 76 567-642 59-153 (356)
189 1z6t_A APAF-1, apoptotic prote 97.1 0.002 7E-08 75.3 12.4 171 534-746 124-327 (591)
190 2zr9_A Protein RECA, recombina 97.1 0.0016 5.5E-08 71.5 10.6 75 568-642 60-153 (349)
191 2cvh_A DNA repair and recombin 97.1 0.0014 4.8E-08 65.9 9.2 38 567-604 18-55 (220)
192 1w5s_A Origin recognition comp 97.0 0.0031 1.1E-07 69.7 12.3 95 273-409 123-228 (412)
193 1n0w_A DNA repair protein RAD5 97.0 0.0013 4.5E-08 67.3 8.5 76 568-643 23-134 (243)
194 1qhx_A CPT, protein (chloramph 97.0 0.00035 1.2E-08 68.2 4.0 35 570-604 4-38 (178)
195 3trf_A Shikimate kinase, SK; a 97.0 0.00035 1.2E-08 68.8 3.7 33 569-601 5-37 (185)
196 2b8t_A Thymidine kinase; deoxy 96.9 0.0027 9.3E-08 65.2 9.5 70 570-640 13-101 (223)
197 1u94_A RECA protein, recombina 96.9 0.0037 1.3E-07 68.8 10.9 75 568-642 62-155 (356)
198 3cmu_A Protein RECA, recombina 96.9 0.0018 6.1E-08 84.7 9.5 77 566-642 729-824 (2050)
199 3aji_B S6C, proteasome (prosom 96.8 0.00067 2.3E-08 58.4 3.8 48 397-448 2-49 (83)
200 3vaa_A Shikimate kinase, SK; s 96.8 0.0006 2.1E-08 68.3 3.8 33 569-601 25-57 (199)
201 2z43_A DNA repair and recombin 96.8 0.0024 8.2E-08 69.3 8.8 75 568-642 106-217 (324)
202 2orw_A Thymidine kinase; TMTK, 96.8 0.0013 4.6E-08 65.3 6.1 31 570-600 4-37 (184)
203 2dr3_A UPF0273 protein PH0284; 96.7 0.0054 1.9E-07 62.7 10.3 35 568-602 22-59 (247)
204 2ehv_A Hypothetical protein PH 96.7 0.0054 1.9E-07 62.8 10.3 23 568-590 29-51 (251)
205 3sfz_A APAF-1, apoptotic pepti 96.7 0.0066 2.3E-07 76.7 13.2 168 534-740 124-322 (1249)
206 3kb2_A SPBC2 prophage-derived 96.7 0.00086 3E-08 64.7 3.9 31 571-601 3-33 (173)
207 1v5w_A DMC1, meiotic recombina 96.7 0.0037 1.3E-07 68.4 9.0 77 567-643 120-234 (343)
208 2iyv_A Shikimate kinase, SK; t 96.6 0.00092 3.2E-08 65.7 3.4 31 571-601 4-34 (184)
209 2iut_A DNA translocase FTSK; n 96.6 0.0088 3E-07 69.4 12.0 75 629-714 344-420 (574)
210 3iij_A Coilin-interacting nucl 96.6 0.001 3.5E-08 65.2 3.5 31 570-600 12-42 (180)
211 1via_A Shikimate kinase; struc 96.6 0.00088 3E-08 65.5 3.0 29 571-599 6-34 (175)
212 1zuh_A Shikimate kinase; alpha 96.6 0.0011 3.6E-08 64.3 3.5 31 570-600 8-38 (168)
213 2rhm_A Putative kinase; P-loop 96.6 0.0012 4E-08 65.2 3.8 31 570-600 6-36 (193)
214 2p5t_B PEZT; postsegregational 96.6 0.0065 2.2E-07 63.3 9.6 38 568-605 31-68 (253)
215 3io5_A Recombination and repai 96.6 0.0038 1.3E-07 67.3 7.8 72 571-642 30-125 (333)
216 3vlf_B 26S protease regulatory 96.5 0.00086 2.9E-08 58.6 2.3 48 397-448 2-49 (88)
217 3upu_A ATP-dependent DNA helic 96.5 0.0044 1.5E-07 70.5 8.5 23 571-593 47-69 (459)
218 1y63_A LMAJ004144AAA protein; 96.5 0.0011 3.9E-08 65.5 3.1 32 570-601 11-43 (184)
219 2cdn_A Adenylate kinase; phosp 96.5 0.0016 5.4E-08 65.1 4.0 31 570-600 21-51 (201)
220 2ze6_A Isopentenyl transferase 96.5 0.0015 5E-08 68.4 3.9 32 571-602 3-34 (253)
221 1aky_A Adenylate kinase; ATP:A 96.5 0.0014 4.7E-08 66.6 3.6 32 569-600 4-35 (220)
222 3lda_A DNA repair protein RAD5 96.4 0.0058 2E-07 68.3 8.8 77 567-643 176-288 (400)
223 2c95_A Adenylate kinase 1; tra 96.4 0.0016 5.4E-08 64.4 3.5 31 570-600 10-40 (196)
224 1tev_A UMP-CMP kinase; ploop, 96.4 0.0015 5.3E-08 64.2 3.3 30 570-599 4-33 (196)
225 3lw7_A Adenylate kinase relate 96.4 0.0013 4.6E-08 63.1 2.8 29 571-600 3-31 (179)
226 1e6c_A Shikimate kinase; phosp 96.4 0.0014 4.9E-08 63.4 3.0 30 571-600 4-33 (173)
227 1kag_A SKI, shikimate kinase I 96.4 0.0019 6.4E-08 62.6 3.8 30 570-599 5-34 (173)
228 2i3b_A HCR-ntpase, human cance 96.4 0.009 3.1E-07 59.6 8.8 23 571-593 3-25 (189)
229 3dm5_A SRP54, signal recogniti 96.3 0.026 8.8E-07 63.7 13.4 73 568-640 99-194 (443)
230 4a74_A DNA repair and recombin 96.3 0.0062 2.1E-07 61.5 7.6 26 568-593 24-49 (231)
231 1vma_A Cell division protein F 96.3 0.034 1.1E-06 59.8 13.6 73 567-639 102-197 (306)
232 2a5y_B CED-4; apoptosis; HET: 96.3 0.019 6.4E-07 66.8 12.4 166 537-739 131-330 (549)
233 3t61_A Gluconokinase; PSI-biol 96.3 0.0024 8E-08 63.9 4.1 31 569-599 18-48 (202)
234 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0054 1.9E-07 64.2 7.0 36 570-605 5-43 (260)
235 2pt5_A Shikimate kinase, SK; a 96.3 0.0021 7.1E-08 62.0 3.5 30 571-600 2-31 (168)
236 1gvn_B Zeta; postsegregational 96.2 0.0057 2E-07 65.2 7.1 37 569-605 33-69 (287)
237 3cm0_A Adenylate kinase; ATP-b 96.2 0.0018 6.1E-08 63.6 2.7 31 570-600 5-35 (186)
238 3dl0_A Adenylate kinase; phosp 96.2 0.0022 7.5E-08 64.8 3.4 30 571-600 2-31 (216)
239 2bwj_A Adenylate kinase 5; pho 96.2 0.0022 7.4E-08 63.5 3.3 31 570-600 13-43 (199)
240 3fb4_A Adenylate kinase; psych 96.2 0.0022 7.5E-08 64.7 3.3 30 571-600 2-31 (216)
241 1zd8_A GTP:AMP phosphotransfer 96.2 0.0021 7.3E-08 65.6 3.1 31 570-600 8-38 (227)
242 2vli_A Antibiotic resistance p 96.2 0.0021 7.1E-08 62.8 2.9 29 570-598 6-34 (183)
243 3be4_A Adenylate kinase; malar 96.2 0.0021 7.3E-08 65.2 3.0 31 570-600 6-36 (217)
244 1qf9_A UMP/CMP kinase, protein 96.2 0.0024 8.1E-08 62.7 3.3 31 570-600 7-37 (194)
245 3tlx_A Adenylate kinase 2; str 96.1 0.0026 8.9E-08 66.0 3.6 33 568-600 28-60 (243)
246 1zak_A Adenylate kinase; ATP:A 96.1 0.0023 7.9E-08 65.0 3.1 31 570-600 6-36 (222)
247 2ius_A DNA translocase FTSK; n 96.1 0.028 9.5E-07 64.6 12.4 75 630-715 299-375 (512)
248 1ukz_A Uridylate kinase; trans 96.1 0.0028 9.5E-08 63.3 3.6 32 569-600 15-46 (203)
249 1kht_A Adenylate kinase; phosp 96.1 0.0021 7.3E-08 63.0 2.7 25 570-594 4-28 (192)
250 1ak2_A Adenylate kinase isoenz 96.1 0.0028 9.6E-08 65.1 3.7 31 570-600 17-47 (233)
251 2i1q_A DNA repair and recombin 96.1 0.0081 2.8E-07 64.8 7.2 25 568-592 97-121 (322)
252 1knq_A Gluconate kinase; ALFA/ 96.1 0.0034 1.2E-07 61.0 3.9 30 570-599 9-38 (175)
253 1ly1_A Polynucleotide kinase; 96.1 0.0022 7.6E-08 62.2 2.5 29 570-598 3-32 (181)
254 3jvv_A Twitching mobility prot 96.1 0.0061 2.1E-07 67.1 6.3 69 570-638 124-206 (356)
255 3bh0_A DNAB-like replicative h 96.0 0.031 1.1E-06 60.2 11.6 36 567-602 66-104 (315)
256 1zp6_A Hypothetical protein AT 96.0 0.0027 9.3E-08 62.5 3.0 36 569-604 9-44 (191)
257 3e1s_A Exodeoxyribonuclease V, 96.0 0.0039 1.3E-07 73.0 4.7 98 570-684 205-318 (574)
258 1nlf_A Regulatory protein REPA 96.0 0.026 8.8E-07 59.4 10.4 26 568-593 29-54 (279)
259 3umf_A Adenylate kinase; rossm 96.0 0.0041 1.4E-07 63.7 4.0 35 569-605 29-63 (217)
260 1e4v_A Adenylate kinase; trans 95.9 0.0037 1.3E-07 63.2 3.5 30 571-600 2-31 (214)
261 4eun_A Thermoresistant glucoki 95.9 0.0049 1.7E-07 61.6 4.2 31 568-598 28-58 (200)
262 2zts_A Putative uncharacterize 95.9 0.025 8.5E-07 57.7 9.7 36 567-602 28-67 (251)
263 1pzn_A RAD51, DNA repair and r 95.9 0.013 4.5E-07 64.2 7.9 26 568-593 130-155 (349)
264 2eyu_A Twitching motility prot 95.9 0.0059 2E-07 64.2 4.9 69 570-638 26-108 (261)
265 2pbr_A DTMP kinase, thymidylat 95.9 0.0054 1.9E-07 60.2 4.3 31 571-601 2-35 (195)
266 3sr0_A Adenylate kinase; phosp 95.9 0.0044 1.5E-07 62.8 3.7 33 571-605 2-34 (206)
267 2pez_A Bifunctional 3'-phospho 95.8 0.0067 2.3E-07 59.3 4.8 36 569-604 5-43 (179)
268 1cr0_A DNA primase/helicase; R 95.8 0.033 1.1E-06 59.1 10.3 26 568-593 34-59 (296)
269 3kl4_A SRP54, signal recogniti 95.8 0.049 1.7E-06 61.3 12.2 73 568-640 96-191 (433)
270 2r6a_A DNAB helicase, replicat 95.8 0.02 6.7E-07 65.0 9.1 36 567-602 201-240 (454)
271 3crm_A TRNA delta(2)-isopenten 95.7 0.0051 1.8E-07 66.6 3.6 34 570-603 6-39 (323)
272 2fz4_A DNA repair protein RAD2 95.6 0.018 6E-07 59.4 7.3 33 571-603 110-142 (237)
273 2jaq_A Deoxyguanosine kinase; 95.6 0.0058 2E-07 60.5 3.5 29 571-599 2-30 (205)
274 1cke_A CK, MSSA, protein (cyti 95.6 0.0069 2.3E-07 61.4 4.0 30 570-599 6-35 (227)
275 2wwf_A Thymidilate kinase, put 95.6 0.0055 1.9E-07 61.3 3.2 32 569-600 10-41 (212)
276 2q6t_A DNAB replication FORK h 95.6 0.055 1.9E-06 61.1 11.9 36 567-602 198-237 (444)
277 2if2_A Dephospho-COA kinase; a 95.6 0.0048 1.6E-07 61.6 2.7 30 571-601 3-32 (204)
278 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0064 2.2E-07 66.6 3.9 30 570-599 25-54 (359)
279 3foz_A TRNA delta(2)-isopenten 95.6 0.0054 1.9E-07 65.9 3.2 37 569-605 10-46 (316)
280 2xb4_A Adenylate kinase; ATP-b 95.6 0.0064 2.2E-07 62.0 3.6 30 571-600 2-31 (223)
281 1nks_A Adenylate kinase; therm 95.6 0.0042 1.5E-07 60.9 2.1 32 571-602 3-37 (194)
282 2z0h_A DTMP kinase, thymidylat 95.5 0.0083 2.8E-07 59.1 4.2 30 572-601 3-35 (197)
283 3uie_A Adenylyl-sulfate kinase 95.5 0.0087 3E-07 59.8 4.3 37 568-604 24-63 (200)
284 1uf9_A TT1252 protein; P-loop, 95.5 0.0063 2.1E-07 60.3 3.2 30 569-599 8-37 (203)
285 2v54_A DTMP kinase, thymidylat 95.5 0.0074 2.5E-07 59.9 3.6 32 570-601 5-37 (204)
286 1nn5_A Similar to deoxythymidy 95.5 0.0069 2.4E-07 60.6 3.4 30 570-599 10-39 (215)
287 3ake_A Cytidylate kinase; CMP 95.4 0.0086 2.9E-07 59.6 4.0 31 571-601 4-34 (208)
288 1uj2_A Uridine-cytidine kinase 95.4 0.011 3.9E-07 61.2 4.9 37 570-606 23-67 (252)
289 3b6e_A Interferon-induced heli 95.4 0.04 1.4E-06 54.8 8.7 24 570-593 49-72 (216)
290 2bbw_A Adenylate kinase 4, AK4 95.3 0.011 3.9E-07 60.9 4.7 30 569-598 27-56 (246)
291 2grj_A Dephospho-COA kinase; T 95.3 0.0074 2.5E-07 60.4 3.0 31 571-601 14-44 (192)
292 4gp7_A Metallophosphoesterase; 95.3 0.027 9.3E-07 54.8 7.1 19 570-588 10-28 (171)
293 3r20_A Cytidylate kinase; stru 95.3 0.01 3.5E-07 61.3 4.1 30 570-599 10-39 (233)
294 1g5t_A COB(I)alamin adenosyltr 95.3 0.081 2.8E-06 53.0 10.4 114 570-699 29-175 (196)
295 2dzn_B 26S protease regulatory 95.3 0.0023 7.8E-08 55.0 -0.9 46 399-448 1-46 (82)
296 2plr_A DTMP kinase, probable t 95.2 0.011 3.9E-07 58.8 4.1 27 570-596 5-31 (213)
297 3a8t_A Adenylate isopentenyltr 95.2 0.0071 2.4E-07 65.8 2.6 34 570-603 41-74 (339)
298 1jjv_A Dephospho-COA kinase; P 95.2 0.0092 3.2E-07 59.6 3.3 28 571-599 4-31 (206)
299 1q57_A DNA primase/helicase; d 95.2 0.06 2.1E-06 61.7 10.5 36 567-602 240-279 (503)
300 3bgw_A DNAB-like replicative h 95.1 0.072 2.5E-06 60.3 10.8 36 567-602 195-233 (444)
301 3nwj_A ATSK2; P loop, shikimat 95.1 0.011 3.8E-07 61.7 3.8 32 570-601 49-80 (250)
302 4e22_A Cytidylate kinase; P-lo 95.1 0.014 4.8E-07 60.7 4.5 30 569-598 27-56 (252)
303 2ewv_A Twitching motility prot 95.1 0.011 3.8E-07 65.3 3.8 71 568-638 135-219 (372)
304 2gxq_A Heat resistant RNA depe 95.0 0.073 2.5E-06 52.7 9.3 23 570-592 39-62 (207)
305 2yvu_A Probable adenylyl-sulfa 94.9 0.018 6.3E-07 56.5 4.5 35 568-602 12-49 (186)
306 2pt7_A CAG-ALFA; ATPase, prote 94.9 0.012 4.2E-07 63.9 3.5 69 570-638 172-250 (330)
307 2px0_A Flagellar biosynthesis 94.8 0.11 3.9E-06 55.4 10.5 35 568-602 104-142 (296)
308 2w58_A DNAI, primosome compone 94.8 0.021 7.2E-07 56.7 4.5 85 8-103 6-93 (202)
309 1p9r_A General secretion pathw 94.8 0.077 2.6E-06 59.5 9.5 93 531-638 144-246 (418)
310 3zvl_A Bifunctional polynucleo 94.7 0.028 9.5E-07 63.1 5.8 32 569-600 258-289 (416)
311 2qor_A Guanylate kinase; phosp 94.7 0.017 5.7E-07 57.8 3.6 25 570-594 13-37 (204)
312 1vht_A Dephospho-COA kinase; s 94.7 0.016 5.4E-07 58.5 3.4 30 570-600 5-34 (218)
313 1q3t_A Cytidylate kinase; nucl 94.7 0.021 7.2E-07 58.6 4.4 31 569-599 16-46 (236)
314 3d3q_A TRNA delta(2)-isopenten 94.7 0.014 4.8E-07 63.6 3.1 33 570-602 8-40 (340)
315 2h92_A Cytidylate kinase; ross 94.6 0.016 5.3E-07 58.5 3.2 31 570-600 4-34 (219)
316 2f6r_A COA synthase, bifunctio 94.6 0.016 5.4E-07 61.5 3.3 31 569-600 75-105 (281)
317 3exa_A TRNA delta(2)-isopenten 94.5 0.016 5.4E-07 62.4 3.1 34 570-603 4-37 (322)
318 1ny5_A Transcriptional regulat 94.5 0.099 3.4E-06 57.9 9.6 44 60-105 155-201 (387)
319 1ltq_A Polynucleotide kinase; 94.5 0.013 4.6E-07 62.1 2.4 31 570-600 3-34 (301)
320 2qt1_A Nicotinamide riboside k 94.5 0.013 4.4E-07 58.6 2.2 31 569-599 21-52 (207)
321 1w36_D RECD, exodeoxyribonucle 94.4 0.053 1.8E-06 63.9 7.6 24 570-593 165-188 (608)
322 1qde_A EIF4A, translation init 94.4 0.088 3E-06 52.9 8.1 60 530-592 13-75 (224)
323 3fdi_A Uncharacterized protein 94.3 0.023 7.8E-07 57.2 3.7 29 571-599 8-36 (201)
324 1vt4_I APAF-1 related killer D 94.3 0.11 3.7E-06 64.3 9.8 43 537-592 131-173 (1221)
325 3dzd_A Transcriptional regulat 94.3 0.16 5.6E-06 55.8 10.6 43 61-105 148-192 (368)
326 3eph_A TRNA isopentenyltransfe 94.2 0.023 8E-07 63.2 3.7 33 570-602 3-35 (409)
327 1hv8_A Putative ATP-dependent 94.2 0.087 3E-06 56.6 8.1 24 570-593 45-68 (367)
328 1m7g_A Adenylylsulfate kinase; 94.1 0.03 1E-06 56.3 4.0 36 569-604 25-64 (211)
329 2pl3_A Probable ATP-dependent 94.1 0.11 3.6E-06 52.9 8.1 55 530-587 24-80 (236)
330 1kgd_A CASK, peripheral plasma 94.1 0.03 1E-06 54.9 3.8 25 570-594 6-30 (180)
331 2fna_A Conserved hypothetical 94.0 0.74 2.5E-05 49.0 15.1 36 66-103 31-66 (357)
332 3tau_A Guanylate kinase, GMP k 94.0 0.026 9E-07 56.7 3.4 27 568-594 7-33 (208)
333 2j41_A Guanylate kinase; GMP, 94.0 0.031 1.1E-06 55.4 3.9 24 570-593 7-30 (207)
334 1rz3_A Hypothetical protein rb 94.0 0.1 3.4E-06 52.0 7.6 35 569-603 22-59 (201)
335 1tf7_A KAIC; homohexamer, hexa 94.0 0.18 6E-06 58.2 10.6 74 568-641 280-384 (525)
336 2yhs_A FTSY, cell division pro 94.0 0.3 1E-05 55.7 12.2 26 568-593 292-317 (503)
337 2bdt_A BH3686; alpha-beta prot 93.9 0.028 9.6E-07 55.2 3.2 24 571-594 4-27 (189)
338 3asz_A Uridine kinase; cytidin 93.9 0.027 9.1E-07 56.4 3.0 27 568-594 5-31 (211)
339 2qmh_A HPR kinase/phosphorylas 93.8 0.021 7.1E-07 57.5 2.1 35 569-604 34-68 (205)
340 3tr0_A Guanylate kinase, GMP k 93.8 0.038 1.3E-06 54.7 4.0 24 570-593 8-31 (205)
341 1ex7_A Guanylate kinase; subst 93.7 0.039 1.3E-06 54.9 3.8 24 571-594 3-26 (186)
342 2axn_A 6-phosphofructo-2-kinas 93.7 0.094 3.2E-06 60.5 7.5 29 570-598 36-64 (520)
343 3llm_A ATP-dependent RNA helic 93.6 0.2 6.7E-06 51.1 9.1 21 570-590 77-97 (235)
344 2oap_1 GSPE-2, type II secreti 93.6 0.043 1.5E-06 63.2 4.4 69 570-638 261-343 (511)
345 1w4r_A Thymidine kinase; type 93.5 0.11 3.6E-06 52.1 6.6 33 570-602 21-56 (195)
346 3c8u_A Fructokinase; YP_612366 93.5 0.039 1.3E-06 55.4 3.5 27 568-594 21-47 (208)
347 4b3f_X DNA-binding protein smu 93.4 0.24 8.1E-06 58.7 10.7 40 538-593 190-229 (646)
348 2j37_W Signal recognition part 93.4 0.14 4.9E-06 58.7 8.3 73 568-640 100-195 (504)
349 3iuy_A Probable ATP-dependent 93.3 0.18 6.1E-06 50.9 8.2 57 528-587 16-75 (228)
350 2xxa_A Signal recognition part 93.3 0.17 5.7E-06 57.0 8.7 72 567-638 98-193 (433)
351 1lvg_A Guanylate kinase, GMP k 93.3 0.044 1.5E-06 54.7 3.5 25 570-594 5-29 (198)
352 1xx6_A Thymidine kinase; NESG, 93.2 0.089 3.1E-06 52.5 5.5 69 570-640 9-93 (191)
353 1c9k_A COBU, adenosylcobinamid 93.2 0.04 1.4E-06 54.6 2.9 32 572-604 2-33 (180)
354 3a00_A Guanylate kinase, GMP k 93.2 0.047 1.6E-06 53.7 3.4 25 570-594 2-26 (186)
355 3e70_C DPA, signal recognition 93.2 0.18 6E-06 54.7 8.2 26 568-593 128-153 (328)
356 1vec_A ATP-dependent RNA helic 93.2 0.11 3.9E-06 51.3 6.2 18 570-587 41-58 (206)
357 3bor_A Human initiation factor 93.2 0.12 4.1E-06 52.7 6.6 55 530-587 29-85 (237)
358 1j8m_F SRP54, signal recogniti 92.9 0.31 1.1E-05 52.0 9.5 72 569-640 98-192 (297)
359 3hdt_A Putative kinase; struct 92.8 0.054 1.8E-06 55.5 3.4 30 570-599 15-44 (223)
360 1x6v_B Bifunctional 3'-phospho 92.8 0.068 2.3E-06 62.9 4.6 35 570-604 53-90 (630)
361 1t6n_A Probable ATP-dependent 92.8 0.44 1.5E-05 47.6 10.1 24 570-593 52-75 (220)
362 1zu4_A FTSY; GTPase, signal re 92.8 0.78 2.7E-05 49.4 12.7 36 567-602 103-141 (320)
363 2xau_A PRE-mRNA-splicing facto 92.8 0.24 8.1E-06 60.0 9.4 23 570-592 110-132 (773)
364 3thx_B DNA mismatch repair pro 92.7 0.26 8.9E-06 60.5 9.7 23 570-592 674-696 (918)
365 3gmt_A Adenylate kinase; ssgci 92.7 0.068 2.3E-06 55.0 3.9 31 570-600 9-39 (230)
366 1gtv_A TMK, thymidylate kinase 92.7 0.032 1.1E-06 55.6 1.5 24 571-594 2-25 (214)
367 3pie_A 5'->3' exoribonuclease 92.7 0.074 2.5E-06 65.6 4.8 69 180-259 1062-1130(1155)
368 3ney_A 55 kDa erythrocyte memb 92.6 0.07 2.4E-06 53.6 3.8 25 570-594 20-44 (197)
369 2jeo_A Uridine-cytidine kinase 92.6 0.073 2.5E-06 54.8 4.0 27 570-596 26-52 (245)
370 1rj9_A FTSY, signal recognitio 92.5 0.55 1.9E-05 50.2 10.9 26 568-593 101-126 (304)
371 1ls1_A Signal recognition part 92.5 0.25 8.4E-06 52.6 8.1 73 568-640 97-192 (295)
372 2v3c_C SRP54, signal recogniti 92.5 0.075 2.6E-06 59.9 4.2 35 568-602 98-135 (432)
373 2ffh_A Protein (FFH); SRP54, s 92.3 0.47 1.6E-05 53.2 10.4 73 568-640 97-192 (425)
374 3trf_A Shikimate kinase, SK; a 92.1 0.069 2.4E-06 52.0 3.0 34 65-100 5-38 (185)
375 1htw_A HI0065; nucleotide-bind 92.1 0.097 3.3E-06 50.5 4.0 24 570-593 34-57 (158)
376 1qhx_A CPT, protein (chloramph 92.1 0.095 3.2E-06 50.6 3.9 33 66-100 4-36 (178)
377 3ec2_A DNA replication protein 92.1 0.11 3.8E-06 50.5 4.5 66 22-100 5-75 (180)
378 1z6g_A Guanylate kinase; struc 92.0 0.088 3E-06 53.3 3.7 24 570-593 24-47 (218)
379 1sky_E F1-ATPase, F1-ATP synth 92.0 0.19 6.6E-06 56.9 6.7 24 570-593 152-175 (473)
380 1znw_A Guanylate kinase, GMP k 92.0 0.097 3.3E-06 52.4 3.9 25 570-594 21-45 (207)
381 2j9r_A Thymidine kinase; TK1, 91.9 0.38 1.3E-05 48.8 8.2 31 571-601 30-63 (214)
382 4eaq_A DTMP kinase, thymidylat 91.9 0.11 3.6E-06 53.3 4.1 26 570-595 27-52 (229)
383 1a7j_A Phosphoribulokinase; tr 91.8 0.065 2.2E-06 57.1 2.5 36 570-605 6-44 (290)
384 3b9q_A Chloroplast SRP recepto 91.8 0.18 6.3E-06 53.9 6.0 26 568-593 99-124 (302)
385 1tf7_A KAIC; homohexamer, hexa 91.7 0.63 2.1E-05 53.6 10.8 22 568-589 38-59 (525)
386 1s96_A Guanylate kinase, GMP k 91.7 0.11 3.6E-06 53.0 3.9 25 570-594 17-41 (219)
387 1q0u_A Bstdead; DEAD protein, 91.4 0.32 1.1E-05 48.6 7.2 19 570-588 42-60 (219)
388 3crm_A TRNA delta(2)-isopenten 91.4 0.12 4.2E-06 55.8 4.2 40 65-106 5-44 (323)
389 3fe2_A Probable ATP-dependent 91.2 0.34 1.2E-05 49.4 7.2 57 528-587 26-84 (242)
390 2iyv_A Shikimate kinase, SK; t 91.2 0.1 3.5E-06 50.8 3.0 32 66-99 3-34 (184)
391 3tbk_A RIG-I helicase domain; 91.2 0.66 2.3E-05 52.7 10.3 24 570-593 20-43 (555)
392 2zj8_A DNA helicase, putative 91.1 0.62 2.1E-05 55.7 10.4 18 570-587 40-57 (720)
393 3thx_A DNA mismatch repair pro 91.1 0.44 1.5E-05 58.7 9.1 22 570-591 663-684 (934)
394 2v9p_A Replication protein E1; 91.1 0.13 4.5E-06 55.1 4.0 26 568-593 125-150 (305)
395 1xjc_A MOBB protein homolog; s 91.1 0.14 4.7E-06 50.2 3.8 24 570-593 5-28 (169)
396 3lxw_A GTPase IMAP family memb 91.1 0.36 1.2E-05 49.8 7.2 24 569-592 21-44 (247)
397 2ged_A SR-beta, signal recogni 91.0 0.22 7.5E-06 48.4 5.3 26 568-593 47-72 (193)
398 1odf_A YGR205W, hypothetical 3 91.0 0.14 4.7E-06 54.5 4.1 27 568-594 30-56 (290)
399 3p32_A Probable GTPase RV1496/ 91.0 0.38 1.3E-05 52.5 7.7 25 569-593 79-103 (355)
400 3tqf_A HPR(Ser) kinase; transf 90.9 0.12 4.1E-06 50.7 3.2 27 570-597 17-43 (181)
401 2qgz_A Helicase loader, putati 90.9 0.16 5.6E-06 54.4 4.6 37 65-103 152-192 (308)
402 1via_A Shikimate kinase; struc 90.9 0.11 3.7E-06 50.3 2.9 32 66-99 5-36 (175)
403 2va8_A SSO2462, SKI2-type heli 90.9 0.69 2.3E-05 55.2 10.4 57 531-589 8-66 (715)
404 2ze6_A Isopentenyl transferase 90.8 0.12 4.3E-06 53.6 3.4 36 67-104 3-38 (253)
405 3foz_A TRNA delta(2)-isopenten 90.8 0.14 4.8E-06 54.9 3.8 41 65-107 10-50 (316)
406 3iij_A Coilin-interacting nucl 90.7 0.13 4.3E-06 50.0 3.2 33 65-99 11-43 (180)
407 1m8p_A Sulfate adenylyltransfe 90.7 0.15 5.1E-06 59.6 4.3 35 570-604 397-435 (573)
408 2og2_A Putative signal recogni 90.6 0.26 8.8E-06 54.1 5.9 26 568-593 156-181 (359)
409 3lnc_A Guanylate kinase, GMP k 90.6 0.093 3.2E-06 53.4 2.2 24 570-593 28-52 (231)
410 2cdn_A Adenylate kinase; phosp 90.5 0.13 4.5E-06 50.9 3.2 33 65-99 20-52 (201)
411 2fwr_A DNA repair protein RAD2 90.5 0.18 6.2E-06 56.8 4.8 33 571-603 110-142 (472)
412 3aez_A Pantothenate kinase; tr 90.5 0.16 5.3E-06 54.7 4.0 27 568-594 89-115 (312)
413 1bif_A 6-phosphofructo-2-kinas 90.5 0.12 4.1E-06 58.8 3.2 29 570-598 40-68 (469)
414 3ice_A Transcription terminati 90.5 0.42 1.4E-05 52.8 7.3 24 570-593 175-198 (422)
415 3tqc_A Pantothenate kinase; bi 90.3 0.21 7E-06 54.0 4.7 27 568-594 91-117 (321)
416 3kta_A Chromosome segregation 90.2 0.16 5.5E-06 49.3 3.4 25 570-594 27-51 (182)
417 1ewq_A DNA mismatch repair pro 90.2 0.94 3.2E-05 54.6 10.7 23 570-592 577-599 (765)
418 3lxx_A GTPase IMAP family memb 90.1 0.73 2.5E-05 46.8 8.5 24 570-593 30-53 (239)
419 4edh_A DTMP kinase, thymidylat 90.0 0.23 7.9E-06 50.3 4.5 31 570-600 7-40 (213)
420 1p5z_B DCK, deoxycytidine kina 89.9 0.068 2.3E-06 55.6 0.5 30 568-597 23-53 (263)
421 1np6_A Molybdopterin-guanine d 89.9 0.21 7.1E-06 49.0 3.9 24 570-593 7-30 (174)
422 2wsm_A Hydrogenase expression/ 89.8 0.26 8.9E-06 49.2 4.7 25 570-594 31-55 (221)
423 2ocp_A DGK, deoxyguanosine kin 89.7 0.19 6.5E-06 51.4 3.7 25 570-594 3-27 (241)
424 1tue_A Replication protein E1; 89.5 0.14 4.6E-06 51.8 2.2 31 65-97 58-88 (212)
425 1sq5_A Pantothenate kinase; P- 89.5 0.22 7.7E-06 53.2 4.1 25 570-594 81-105 (308)
426 2j0s_A ATP-dependent RNA helic 89.4 0.67 2.3E-05 50.7 8.1 58 530-590 36-95 (410)
427 1wp9_A ATP-dependent RNA helic 89.4 1 3.6E-05 49.6 9.7 32 571-602 25-60 (494)
428 4i1u_A Dephospho-COA kinase; s 89.4 0.18 6E-06 51.2 3.0 31 570-601 10-40 (210)
429 3oiy_A Reverse gyrase helicase 89.4 0.85 2.9E-05 50.2 8.9 20 570-589 37-56 (414)
430 3h1t_A Type I site-specific re 89.3 0.38 1.3E-05 56.0 6.4 24 570-593 199-222 (590)
431 1wb9_A DNA mismatch repair pro 89.3 0.86 2.9E-05 55.2 9.5 23 570-592 608-630 (800)
432 3ly5_A ATP-dependent RNA helic 89.1 0.41 1.4E-05 49.7 5.8 18 570-587 92-109 (262)
433 3tif_A Uncharacterized ABC tra 89.1 0.19 6.6E-06 51.6 3.1 24 570-593 32-55 (235)
434 1nrj_B SR-beta, signal recogni 89.1 0.25 8.4E-06 49.2 3.9 25 569-593 12-36 (218)
435 3vaa_A Shikimate kinase, SK; s 89.0 0.2 6.7E-06 49.7 3.0 34 65-100 25-58 (199)
436 2dyk_A GTP-binding protein; GT 89.0 0.23 7.8E-06 46.4 3.3 23 570-592 2-24 (161)
437 1u0j_A DNA replication protein 88.9 0.2 6.8E-06 52.6 3.1 27 65-93 104-130 (267)
438 3a8t_A Adenylate isopentenyltr 88.9 0.22 7.4E-06 54.1 3.4 40 66-107 41-80 (339)
439 2f1r_A Molybdopterin-guanine d 88.8 0.17 5.6E-06 49.6 2.3 24 570-593 3-26 (171)
440 2onk_A Molybdate/tungstate ABC 88.7 0.23 8E-06 51.2 3.5 24 570-593 25-48 (240)
441 2cbz_A Multidrug resistance-as 88.7 0.21 7.2E-06 51.4 3.1 24 570-593 32-55 (237)
442 2hf9_A Probable hydrogenase ni 88.7 0.43 1.5E-05 47.7 5.4 24 570-593 39-62 (226)
443 1g8f_A Sulfate adenylyltransfe 88.7 0.21 7.1E-06 57.4 3.4 26 570-595 396-421 (511)
444 3k53_A Ferrous iron transport 88.6 0.32 1.1E-05 50.7 4.6 23 570-592 4-26 (271)
445 2qm8_A GTPase/ATPase; G protei 88.6 0.82 2.8E-05 49.5 7.9 24 570-593 56-79 (337)
446 2pcj_A ABC transporter, lipopr 88.5 0.19 6.5E-06 51.2 2.6 24 570-593 31-54 (224)
447 3sop_A Neuronal-specific septi 88.4 0.25 8.5E-06 52.0 3.5 23 571-593 4-26 (270)
448 1fuu_A Yeast initiation factor 88.4 0.59 2E-05 50.6 6.7 54 530-587 20-76 (394)
449 1upt_A ARL1, ADP-ribosylation 88.4 0.32 1.1E-05 45.8 4.0 24 569-592 7-30 (171)
450 2f9l_A RAB11B, member RAS onco 88.3 0.24 8.3E-06 48.6 3.2 24 570-593 6-29 (199)
451 1oix_A RAS-related protein RAB 88.3 0.24 8.1E-06 48.6 3.1 24 570-593 30-53 (191)
452 1e6c_A Shikimate kinase; phosp 88.3 0.24 8E-06 47.4 3.0 32 66-99 3-34 (173)
453 3eiq_A Eukaryotic initiation f 88.3 0.46 1.6E-05 52.0 5.7 59 528-589 37-97 (414)
454 1z2a_A RAS-related protein RAB 88.2 0.28 9.5E-06 46.0 3.4 24 570-593 6-29 (168)
455 3b85_A Phosphate starvation-in 88.2 0.18 6.2E-06 50.9 2.2 23 570-592 23-45 (208)
456 3exa_A TRNA delta(2)-isopenten 88.0 0.25 8.6E-06 53.1 3.2 40 66-107 4-43 (322)
457 2lkc_A Translation initiation 88.0 0.38 1.3E-05 45.7 4.3 25 568-592 7-31 (178)
458 2gks_A Bifunctional SAT/APS ki 88.0 0.71 2.4E-05 53.5 7.2 35 570-604 373-410 (546)
459 2p6r_A Afuhel308 helicase; pro 87.9 0.59 2E-05 55.7 6.8 19 570-588 41-59 (702)
460 1aky_A Adenylate kinase; ATP:A 87.9 0.27 9.2E-06 49.4 3.3 33 65-99 4-36 (220)
461 2ce2_X GTPase HRAS; signaling 87.9 0.29 9.9E-06 45.5 3.3 24 570-593 4-27 (166)
462 3cr8_A Sulfate adenylyltranfer 87.9 0.23 7.8E-06 57.7 3.1 25 570-594 370-394 (552)
463 1kao_A RAP2A; GTP-binding prot 87.8 0.3 1E-05 45.6 3.4 24 570-593 4-27 (167)
464 1mv5_A LMRA, multidrug resista 87.8 0.25 8.5E-06 51.0 3.0 24 570-593 29-52 (243)
465 1u8z_A RAS-related protein RAL 87.8 0.28 9.6E-06 45.8 3.2 24 570-593 5-28 (168)
466 3dkp_A Probable ATP-dependent 87.8 0.93 3.2E-05 46.0 7.4 17 570-586 67-83 (245)
467 1ak2_A Adenylate kinase isoenz 87.8 0.28 9.5E-06 49.9 3.3 35 63-99 14-48 (233)
468 1b0u_A Histidine permease; ABC 87.8 0.26 8.8E-06 51.6 3.1 24 570-593 33-56 (262)
469 1lw7_A Transcriptional regulat 87.8 0.27 9.4E-06 53.7 3.5 27 570-596 171-197 (365)
470 1nij_A Hypothetical protein YJ 87.7 0.59 2E-05 50.2 6.0 24 570-593 5-28 (318)
471 3tmk_A Thymidylate kinase; pho 87.7 0.46 1.6E-05 48.2 4.8 28 570-597 6-33 (216)
472 3dl0_A Adenylate kinase; phosp 87.6 0.23 8E-06 49.6 2.6 31 67-99 2-32 (216)
473 1zuh_A Shikimate kinase; alpha 87.6 0.26 9E-06 47.1 2.8 32 66-99 8-39 (168)
474 1sgw_A Putative ABC transporte 87.6 0.23 7.8E-06 50.4 2.5 24 570-593 36-59 (214)
475 1ek0_A Protein (GTP-binding pr 87.6 0.32 1.1E-05 45.6 3.4 24 570-593 4-27 (170)
476 3fb4_A Adenylate kinase; psych 87.5 0.25 8.5E-06 49.3 2.7 31 67-99 2-32 (216)
477 3kb2_A SPBC2 prophage-derived 87.5 0.31 1.1E-05 46.3 3.3 31 67-99 3-33 (173)
478 2gza_A Type IV secretion syste 87.5 0.27 9.2E-06 53.9 3.2 25 570-594 176-200 (361)
479 2ghi_A Transport protein; mult 87.5 0.28 9.5E-06 51.2 3.1 24 570-593 47-70 (260)
480 4a1f_A DNAB helicase, replicat 87.4 0.42 1.4E-05 52.0 4.6 36 567-602 44-82 (338)
481 2gk6_A Regulator of nonsense t 87.4 0.27 9.4E-06 57.9 3.4 23 571-593 197-219 (624)
482 2zu0_C Probable ATP-dependent 87.4 0.33 1.1E-05 50.9 3.6 23 570-592 47-69 (267)
483 2wjg_A FEOB, ferrous iron tran 87.4 0.34 1.2E-05 46.6 3.6 23 570-592 8-30 (188)
484 2v6i_A RNA helicase; membrane, 87.4 0.38 1.3E-05 53.9 4.4 21 570-590 3-24 (431)
485 2rhm_A Putative kinase; P-loop 87.4 0.24 8.4E-06 48.2 2.5 33 65-99 5-37 (193)
486 3t61_A Gluconokinase; PSI-biol 87.3 0.33 1.1E-05 48.0 3.5 36 62-99 15-50 (202)
487 1z0j_A RAB-22, RAS-related pro 87.3 0.34 1.1E-05 45.5 3.4 24 570-593 7-30 (170)
488 2d2e_A SUFC protein; ABC-ATPas 87.3 0.3 1E-05 50.6 3.3 23 570-592 30-52 (250)
489 3v9p_A DTMP kinase, thymidylat 87.3 0.24 8.3E-06 50.7 2.5 24 570-593 26-49 (227)
490 3lv8_A DTMP kinase, thymidylat 87.2 0.31 1.1E-05 50.2 3.3 24 570-593 28-51 (236)
491 2p67_A LAO/AO transport system 87.2 1.2 4.1E-05 48.2 8.1 25 569-593 56-80 (341)
492 1ky3_A GTP-binding protein YPT 87.1 0.32 1.1E-05 46.3 3.1 25 569-593 8-32 (182)
493 2pze_A Cystic fibrosis transme 87.1 0.27 9.2E-06 50.3 2.7 24 570-593 35-58 (229)
494 2bwj_A Adenylate kinase 5; pho 87.1 0.28 9.7E-06 47.9 2.8 33 65-99 12-44 (199)
495 1g16_A RAS-related protein SEC 87.1 0.34 1.2E-05 45.5 3.3 23 570-592 4-26 (170)
496 2ixe_A Antigen peptide transpo 87.1 0.3 1E-05 51.3 3.1 24 570-593 46-69 (271)
497 1wms_A RAB-9, RAB9, RAS-relate 87.1 0.35 1.2E-05 45.9 3.4 23 570-592 8-30 (177)
498 1y63_A LMAJ004144AAA protein; 87.1 0.29 9.9E-06 47.8 2.8 33 65-99 10-43 (184)
499 2ff7_A Alpha-hemolysin translo 87.1 0.27 9.3E-06 50.9 2.8 24 570-593 36-59 (247)
500 1g6h_A High-affinity branched- 87.0 0.27 9.3E-06 51.2 2.8 24 570-593 34-57 (257)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.3e-71 Score=666.33 Aligned_cols=545 Identities=27% Similarity=0.440 Sum_probs=382.8
Q ss_pred ccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 22 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 22 ~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
-+|+|+++.++ ++.|..|.+.+..+|+||++.+ +-=...+++|||+||||| ++++||||+|++++++++.++.+
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~f~--~~g~~~p~GILL~GPPGT--GKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPALFK--AIGVKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGGGT--SCCCCCCCEEEEECCTTS--CHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCChhhhcCH--HHHHHHHHHHHHHHccCHHHHh--hcCCCCCCeEEEECCCCC--CHHHHHHHHHHHhCCeEEEEEhH
Confidence 46999999999 9999999999999999999853 222456899999999999 99999999999999999999976
Q ss_pred ccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 003253 102 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 181 (836)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (836)
++.+
T Consensus 273 ~l~s---------------------------------------------------------------------------- 276 (806)
T 3cf2_A 273 EIMS---------------------------------------------------------------------------- 276 (806)
T ss_dssp HHHS----------------------------------------------------------------------------
T ss_pred Hhhc----------------------------------------------------------------------------
Confidence 6655
Q ss_pred cccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccccc
Q 003253 182 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 261 (836)
Q Consensus 182 ~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (836)
+|+|.
T Consensus 277 ---------k~~ge------------------------------------------------------------------ 281 (806)
T 3cf2_A 277 ---------KLAGE------------------------------------------------------------------ 281 (806)
T ss_dssp ---------SCTTH------------------------------------------------------------------
T ss_pred ---------ccchH------------------------------------------------------------------
Confidence 33333
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhcc----Ccc----hhhHHHHHHhcC--CCcEEEEeeec
Q 003253 262 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSD----SYSTFKSRLEKL--PDKVIVIGSHT 331 (836)
Q Consensus 262 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~----~~~----~~~~l~~~l~~l--~g~v~vIgs~~ 331 (836)
....++.+|+.+.. .+|+||||||||.+... ..+ +.+.|...|+.+ .++|+|||+||
T Consensus 282 ----------se~~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 282 ----------SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp ----------HHHHHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred ----------HHHHHHHHHHHHHH---cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 57788999999998 99999999999997652 222 334444555554 35899999999
Q ss_pred cCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 332 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 332 ~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
+++ .||+|++|||| |..+|+|++|+.++|.+||+.++
T Consensus 349 ~~d----------------------~LD~ALrR~GR-------------------Fd~~I~i~~Pd~~~R~~IL~~~l-- 385 (806)
T 3cf2_A 349 RPN----------------------SIDPALRRFGR-------------------FDREVDIGIPDATGRLEILQIHT-- 385 (806)
T ss_dssp STT----------------------TSCTTTTSTTS-------------------SCEEEECCCCCHHHHHHHHHHTC--
T ss_pred Chh----------------------hcCHHHhCCcc-------------------cceEEecCCCCHHHHHHHHHHHh--
Confidence 998 59999999999 99999999999999999999888
Q ss_pred hhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccccccchhhhhhhH
Q 003253 412 DSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGI 491 (836)
Q Consensus 412 ~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~i~~~~~~~~~~~ 491 (836)
++..+..+++....+..|+||+|.||..||.++.+. |+.+........ . . ....+ .
T Consensus 386 --~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~-----------A~~r~~~~i~~~-~-~--~~~~e-------~ 441 (806)
T 3cf2_A 386 --KNMKLADDVDLEQVANETHGHVGADLAALCSEAALQ-----------AIRKKMDLIDLE-D-E--TIDAE-------V 441 (806)
T ss_dssp --SSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHH-----------HHHHHHHHGGGT-C-C--CCSHH-------H
T ss_pred --cCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHH-----------HHHhcccccccc-c-c--ccchh-------h
Confidence 556677788888888899999999999998877662 222211100000 0 0 00000 0
Q ss_pred HHHHHHhhhhhhccccccCCHHHHHHHHhcCcC-------CCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCC
Q 003253 492 FQAIQNESKSLKKSLKDVVTENEFEKRLLADVI-------PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQ 564 (836)
Q Consensus 492 ~~~i~~~~~~~~~~~~~~v~~~d~~~~l~~~ii-------~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~ 564 (836)
.. ...++.+||..++. .+. ....+.++|++++|++++++.|++.+.+|+.+++.|.+.+
T Consensus 442 ~~-------------~~~v~~~Df~~Al~-~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g 507 (806)
T 3cf2_A 442 MN-------------SLAVTMDDFRWALS-QSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG 507 (806)
T ss_dssp HH-------------HCEECTTHHHHHHS-SSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC
T ss_pred hc-------------cceeeHHHHHHHHH-hCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC
Confidence 00 01134455554432 111 2234578999999999999999999999999999998876
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCC
Q 003253 565 LTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRR 644 (836)
Q Consensus 565 ~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r 644 (836)
. +|++++|||||||||||++|+++|++++.+|+.++.++++++|+|++++.++.+|..|++.+||||||||||.|++.|
T Consensus 508 ~-~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R 586 (806)
T 3cf2_A 508 M-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 586 (806)
T ss_dssp C-CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---
T ss_pred C-CCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhcc
Confidence 4 567999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhC
Q 003253 645 ENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE 720 (836)
Q Consensus 645 ~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~ 720 (836)
... ..+....+++++|+.+|+++... .+|+||||||+|+.||++++| ||++.|+|++|+.++|.+||+.++++.
T Consensus 587 ~~~~~~~~~~~~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~ 664 (806)
T 3cf2_A 587 GGNIGDGGGAADRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp -----------CHHHHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC
T ss_pred CCCCCCCchHHHHHHHHHHHHHhCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC
Confidence 532 34456778999999999998653 679999999999999999999 999999999999999999999999998
Q ss_pred CCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 003253 721 DLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERV 800 (836)
Q Consensus 721 ~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v 800 (836)
++..+++++.||+.|+||||+||.++|++|++.|+++.++............ ............++|+++||++|++++
T Consensus 665 ~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~df~~al~~~ 743 (806)
T 3cf2_A 665 PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTN-PSAMEVEEDDPVPEIRRDHFEEAMRFA 743 (806)
T ss_dssp --CCC----------------CHHHHHHHHHHHHHHHHHC------------------------CCC----CCTTTC---
T ss_pred CCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC-ccccccccccccCccCHHHHHHHHHhC
Confidence 8888999999999999999999999999999999999876443211110000 000001112344689999999999999
Q ss_pred ccCccccccchhhHHHHHHHhcC
Q 003253 801 CASVSSESVNMSELLQWNELYGE 823 (836)
Q Consensus 801 ~pS~~~~~~~~~~~~~W~~i~G~ 823 (836)
+||++.+.. ..|.+|.+.++.
T Consensus 744 ~pSvs~~~l--~~y~~~~~~f~~ 764 (806)
T 3cf2_A 744 RRSVSDNDI--RKYEMFAQTLQQ 764 (806)
T ss_dssp --------------CCCC-----
T ss_pred CCCCCHHHH--HHHHHHHHHHhc
Confidence 999998754 456667666543
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.7e-48 Score=475.14 Aligned_cols=545 Identities=27% Similarity=0.425 Sum_probs=383.9
Q ss_pred ccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 22 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 22 ~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
-.|+|+++.++ +..+..|.+.+..+|+++++.+. --...+..|||+||+|| ++++||||||+..+.+++.++..
T Consensus 199 ~~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~~~~--l~i~~~~~vLL~Gp~Gt--GKTtLarala~~l~~~~i~v~~~ 272 (806)
T 1ypw_A 199 NEVGYDDVGGC--RKQLAQIKEMVELPLRHPALFKA--IGVKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--SGGGGHHHHHHHHHHHCGGGGTS--SCCCCCCEEEECSCTTS--SHHHHHHHHHHTTTCEEEEEEHH
T ss_pred CCCCHHHhCCh--HHHHHHHHHHHHHHhhCHHHHHh--cCCCCCCeEEEECcCCC--CHHHHHHHHHHHcCCcEEEEEch
Confidence 35899999999 99999999999999999998532 11356788999999999 99999999999999999988865
Q ss_pred ccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 003253 102 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 181 (836)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (836)
.+.+
T Consensus 273 ~l~~---------------------------------------------------------------------------- 276 (806)
T 1ypw_A 273 EIMS---------------------------------------------------------------------------- 276 (806)
T ss_dssp HHSS----------------------------------------------------------------------------
T ss_pred Hhhh----------------------------------------------------------------------------
Confidence 5444
Q ss_pred cccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccccc
Q 003253 182 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 261 (836)
Q Consensus 182 ~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (836)
+|.|.
T Consensus 277 ---------~~~g~------------------------------------------------------------------ 281 (806)
T 1ypw_A 277 ---------KLAGE------------------------------------------------------------------ 281 (806)
T ss_dssp ---------SSTTH------------------------------------------------------------------
T ss_pred ---------hhhhh------------------------------------------------------------------
Confidence 11111
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC----cc----hhhHHHHHHhcC--CCcEEEEeeec
Q 003253 262 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SD----SYSTFKSRLEKL--PDKVIVIGSHT 331 (836)
Q Consensus 262 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~----~~----~~~~l~~~l~~l--~g~v~vIgs~~ 331 (836)
....+..+|+.+.. ..|+||||||||.++... .+ +.+.+...|+.. ..+|+||++||
T Consensus 282 ----------~~~~l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn 348 (806)
T 1ypw_A 282 ----------SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp ----------HHHHHHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECS
T ss_pred ----------HHHHHHHHHHHHHh---cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccC
Confidence 35567788888887 789999999999876522 22 233444444443 35899999999
Q ss_pred cCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 332 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 332 ~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
.++ .+|++++|++| |...+.+.+|+.++|.+||+.++
T Consensus 349 ~~~----------------------~ld~al~r~gR-------------------f~~~i~i~~p~~~~r~~il~~~~-- 385 (806)
T 1ypw_A 349 RPN----------------------SIDPALRRFGR-------------------FDREVDIGIPDATGRLEILQIHT-- 385 (806)
T ss_dssp CTT----------------------TSCTTTTSTTS-------------------SCEEECCCCCCHHHHHHHHHHTT--
T ss_pred Cch----------------------hcCHHHhcccc-------------------cccccccCCCCHHHHHHHHHHHH--
Confidence 987 48899999999 99999999999999999999776
Q ss_pred hhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccccccchhhhhhhH
Q 003253 412 DSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGI 491 (836)
Q Consensus 412 ~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~i~~~~~~~~~~~ 491 (836)
..+.+..+.+....+..+.|+.+.|+..+|..+.. .++.+...........+..
T Consensus 386 --~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~---------------~a~r~~~~~i~~~~~~~~~--------- 439 (806)
T 1ypw_A 386 --KNMKLADDVDLEQVANETHGHVGADLAALCSEAAL---------------QAIRKKMDLIDLEDETIDA--------- 439 (806)
T ss_dssp --TTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHH---------------HHHHHTTTTTSCHHHHCCH---------
T ss_pred --hcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHH---------------HHHhhhccccchhhhccch---------
Confidence 33444555555556666777777777766654332 2222111111000000000
Q ss_pred HHHHHHhhhhhhccccccCCHHHHHHHHhcC------cCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCC
Q 003253 492 FQAIQNESKSLKKSLKDVVTENEFEKRLLAD------VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQL 565 (836)
Q Consensus 492 ~~~i~~~~~~~~~~~~~~v~~~d~~~~l~~~------ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~ 565 (836)
.. .....++..++...+... ......+.++|++++|++++++.|.+.+.+++.+++.+...+.
T Consensus 440 ------~~-----~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~ 508 (806)
T 1ypw_A 440 ------EV-----MNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM 508 (806)
T ss_dssp ------HH-----HTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC
T ss_pred ------hh-----hhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCC
Confidence 00 000112233333322110 1112334689999999999999999999999999988876653
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCC
Q 003253 566 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 645 (836)
Q Consensus 566 ~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~ 645 (836)
.++.++||+||||||||++|+++|..++.+|+.++++++.+.|+|+.+..++.+|..|+...|+||||||||.++..+.
T Consensus 509 -~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~ 587 (806)
T 1ypw_A 509 -TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587 (806)
T ss_dssp -CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTT
T ss_pred -CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhcc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCC
Q 003253 646 NP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKED 721 (836)
Q Consensus 646 ~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~ 721 (836)
.. .......+++++|+..+++... ..+++||+|||.++.++++++| ||+..++++.|+.++|.+||+.++.+..
T Consensus 588 ~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~ 665 (806)
T 1ypw_A 588 GNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP 665 (806)
T ss_dssp TCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-
T ss_pred CCCCCcchhHHHHHHHHHHHHhcccc--cCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC
Confidence 43 2345678899999999998754 3679999999999999999999 9999999999999999999999998888
Q ss_pred CCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 003253 722 LSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 801 (836)
Q Consensus 722 l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~ 801 (836)
+..+.++..|+..+.||+++||.++|+.|+..++++.++.+......... .............++|+++||++|++.++
T Consensus 666 ~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~f~~a~~~~~ 744 (806)
T 1ypw_A 666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT-NPSAMEVEEDDPVPEIRRDHFEEAMRFAR 744 (806)
T ss_dssp ---CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-------------------------CCTTTTTTSSCCCCCC--
T ss_pred CCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-cccccccccccccCccCHHHHHHHHHhCC
Confidence 77888999999999999999999999999999998865543221100000 00000001122346799999999999999
Q ss_pred cCccccccchhhHHHHHHHhc
Q 003253 802 ASVSSESVNMSELLQWNELYG 822 (836)
Q Consensus 802 pS~~~~~~~~~~~~~W~~i~G 822 (836)
||++.+. ...+.+|.+.++
T Consensus 745 ~svs~~~--~~~ye~~~~~~~ 763 (806)
T 1ypw_A 745 RSVSDND--IRKYEMFAQTLQ 763 (806)
T ss_dssp ---------------------
T ss_pred CCCCHHH--HHHHHHHHHHHH
Confidence 9998774 556888988654
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-43 Score=391.21 Aligned_cols=251 Identities=33% Similarity=0.581 Sum_probs=229.7
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.++|+||+|+++++++|++.|.+|+.+|+.|.+.+. +|++|+|||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 35799999999999999999999999999999998774 56699999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
+|+|+++..++.+|..|+..+||||||||||.+++.+... +......+++.+++..++++.. ..+|+||||||+|+
T Consensus 221 k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIaATNrpd 298 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIMATNRLD 298 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEEEESCSS
T ss_pred cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--CCCeEEEeccCChh
Confidence 9999999999999999999999999999999999877543 3344567889999999999864 36799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.||++++| ||++.|+|++|+.++|.+||+.++++.++..++++..||..|+||||+||.++|++|++.|+++
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~------ 372 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE------ 372 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999999 9999999999999999999999999998889999999999999999999999999999998875
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 807 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~ 807 (836)
....|+++||+.|++++.+.....
T Consensus 373 --------------------~~~~vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 373 --------------------RRIHVTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp --------------------TCSBCCHHHHHHHHHHHHHHHTCC
T ss_pred --------------------CCCCcCHHHHHHHHHHHhCccccc
Confidence 224699999999999998765443
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-42 Score=384.85 Aligned_cols=261 Identities=33% Similarity=0.577 Sum_probs=229.1
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.++|+||+|+++++++|++.|.+|+.+|+.|...++ +|++|||||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 45799999999999999999999999999999988774 56799999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
+|+|++++.++.+|..|+..+||||||||+|.+++.|... +......+++.+++..+++... ..+|+||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECSCTT
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCCCcc
Confidence 9999999999999999999999999999999999887543 3344566788899999998754 36799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.||++++| ||++.|+|++|+.++|.+||+.++++..+..+++++.||..|+||||+||.++|++|++.|+++
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~------ 433 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA------ 433 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH------
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999999 9999999999999999999999999998888999999999999999999999999999999875
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHH
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWN 818 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~ 818 (836)
....++++||..|++++.++..... ....+.+||
T Consensus 434 --------------------~~~~it~~Df~~Al~kV~~g~~k~s-~~~~y~~~n 467 (467)
T 4b4t_H 434 --------------------RRKVATEKDFLKAVDKVISGYKKFS-STSRYMQYN 467 (467)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHHHCC------------
T ss_pred --------------------CCCccCHHHHHHHHHHHhcCcccch-hHHHHHhhC
Confidence 1246899999999999988765432 234577886
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-42 Score=383.76 Aligned_cols=252 Identities=35% Similarity=0.617 Sum_probs=229.6
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.++|+||+|+++++++|++.+.+|+.+|+.|...+. +|++|||||||||||||++|+|+|++++.+|+.++++++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 45799999999999999999999999999999998774 56699999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCc--hHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~--~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
+|+|+++..++.+|..|+..+||||||||||.+++.|.... ......+++.+++..+++... ..+++||||||+++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEESCST
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC--CCCEEEEEeCCChh
Confidence 99999999999999999999999999999999998874332 233456788899999998754 36799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..+++++.||..|+||||+||.++|++|++.|+++
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~------ 406 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE------ 406 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999999 9999999999999999999999999998888999999999999999999999999999998875
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccc
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSES 808 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~ 808 (836)
....|+++||..|++++.++...+.
T Consensus 407 --------------------~~~~It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 407 --------------------RRMQVTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp --------------------TCSCBCHHHHHHHHHHHHHHHCCCS
T ss_pred --------------------CCCccCHHHHHHHHHHHhCCCChhh
Confidence 1246999999999999988876653
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-41 Score=383.39 Aligned_cols=252 Identities=33% Similarity=0.572 Sum_probs=230.4
Q ss_pred CCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc
Q 003253 527 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 606 (836)
Q Consensus 527 ~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~ 606 (836)
..+.++|+||+|++++++.|++.|.+|+.+|+.|.+.+. +|++|||||||||||||++|+|+|++++.+|+.++++++.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 346789999999999999999999999999999998774 5669999999999999999999999999999999999999
Q ss_pred hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCc--hHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 607 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 607 s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~--~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
++|+|++++.++.+|..|+..+||||||||||.+++.|.... ......+++.+++..++++... .+|+||||||+|
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp 330 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRV 330 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCc
Confidence 999999999999999999999999999999999998885432 2345567889999999998653 679999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 685 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 762 (836)
Q Consensus 685 ~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~ 762 (836)
+.||++++| ||++.|+|++|+.++|.+||+.++++..+..+++++.||..|+||||+||.++|++|++.|+++
T Consensus 331 ~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~----- 405 (434)
T 4b4t_M 331 DVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN----- 405 (434)
T ss_dssp CCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH-----
T ss_pred hhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999999 9999999999999999999999999999888999999999999999999999999999998875
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 003253 763 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 807 (836)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~ 807 (836)
....|+++||..|+++++|+.++.
T Consensus 406 ---------------------~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 406 ---------------------GQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ---------------------TCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred ---------------------CCCCcCHHHHHHHHHHHhCCCCcC
Confidence 124699999999999999876543
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-41 Score=381.91 Aligned_cols=251 Identities=38% Similarity=0.648 Sum_probs=228.0
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.++|+||+|++++++.|++.|.+|+.+|+.|...++ +|++|||||||||||||++|+|+|++++++|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 45799999999999999999999999999999998774 67799999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
+|.|+++..++.+|..|+..+||||||||||.+++.|... .......+++.+|+..+++.... .+++||+|||+|+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCch
Confidence 9999999999999999999999999999999999887443 23345567889999999998643 6799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++|+..||..|+||||+||.++|++|++.|+++
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~------ 405 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD------ 405 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT------
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc------
Confidence 99999998 6999999999999999999999999988888999999999999999999999999999998874
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 807 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~ 807 (836)
....|+++||..|++++.++...+
T Consensus 406 --------------------~~~~i~~~d~~~Al~~v~~~~k~e 429 (437)
T 4b4t_L 406 --------------------DRDHINPDDLMKAVRKVAEVKKLE 429 (437)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHHHTCC--
T ss_pred --------------------CCCCCCHHHHHHHHHHHHhccCcc
Confidence 224699999999999998876544
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-40 Score=370.24 Aligned_cols=250 Identities=35% Similarity=0.580 Sum_probs=225.9
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.++|+||+|++++++.|++.+.+|+.+|+.|...+. +|++|+|||||||||||++|+|+|++++++|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 35789999999999999999999999999999998774 56699999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
+|+|+++..++.+|..|+..+||||||||+|.+++.|... .......+++.+|+..++++... .+++||||||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSS
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChh
Confidence 9999999999999999999999999999999999887432 23345678899999999998653 6799999999999
Q ss_pred CCcHHHHh--hccccccCC-CCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVN-LPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 762 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~-~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~ 762 (836)
.||++++| ||+..|+|+ +|+.++|..||+.++.+.++..+++++.||..|+||||+||.++|++|++.|+++
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~----- 397 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK----- 397 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-----
Confidence 99999999 999999996 8999999999999999998888999999999999999999999999999998875
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHH-hccCccc
Q 003253 763 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHER-VCASVSS 806 (836)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~-v~pS~~~ 806 (836)
....|+++||++|+.. +.++...
T Consensus 398 ---------------------~~~~i~~~d~~~A~~~~~~~~~~~ 421 (428)
T 4b4t_K 398 ---------------------NRYVILQSDLEEAYATQVKTDNTV 421 (428)
T ss_dssp ---------------------TCSSBCHHHHHHHHHHHSCSCCCS
T ss_pred ---------------------CCCCCCHHHHHHHHHHhhCccCCc
Confidence 2246999999999986 4555443
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2e-39 Score=389.67 Aligned_cols=288 Identities=37% Similarity=0.599 Sum_probs=253.3
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
+.++|+||+|+++++++|++.+.+|+.+|+.|...+. +|++|||||||||||||+||+++|++++.+|+.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~-~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC-CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4689999999999999999999999999999988774 567999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 688 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld 688 (836)
|.|+++..++.+|..|++++|+||||||||.|++++.... ....++++++|+..|+++.. ..+|+||+|||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhcccc--cCCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999998875433 34457889999999999864 36799999999999999
Q ss_pred HHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 689 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 766 (836)
Q Consensus 689 ~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~ 766 (836)
++++| ||++.|+++.|+.++|.+||+.++++..+..++++..||..|+||+++||..||++|++.++++.......
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~-- 432 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL-- 432 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc--
Confidence 99999 99999999999999999999999998888889999999999999999999999999999999885432110
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCCCccc
Q 003253 767 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRRK 829 (836)
Q Consensus 767 ~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~~r~~ 829 (836)
... ...........++++||..|+..++|+..++.....|.+.|++|+|++.+|+.
T Consensus 433 -----~~~--~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~ 488 (806)
T 3cf2_A 433 -----EDE--TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488 (806)
T ss_dssp -----TCC--CCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHH
T ss_pred -----ccc--ccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHH
Confidence 000 00000012246899999999999999999998888899999999999888764
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=331.36 Aligned_cols=289 Identities=38% Similarity=0.660 Sum_probs=242.3
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCCcceeeccccch
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 607 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-~~~~i~v~~s~l~s 607 (836)
+.++|+||+|++.+++.|++.+.+|+.+++.|.. ...|++++||+||||||||++|+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT--TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC--CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 4689999999999999999999999999999873 24677999999999999999999999999 89999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 687 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~L 687 (836)
.+.|..+..++.+|..++...|+||||||||.+.+.+... ......+++++++..+++... ...+++||+|||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999998876543 345567888999999998753 24689999999999999
Q ss_pred cHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 688 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 766 (836)
Q Consensus 688 d~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~ 766 (836)
+++++|||+..+++++|+.++|.+||+.++...+.. .+.++..||..++||+|+||..+|++|+..++++.........
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~ 242 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKK 242 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEE
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999877654 6788999999999999999999999999999998643210000
Q ss_pred HHHHhcCCC----------CCCC---------------CCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHh
Q 003253 767 AAAMAEGKP----------APAL---------------SGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELY 821 (836)
Q Consensus 767 ~~a~~~~~~----------~~~~---------------~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~ 821 (836)
....... .++. ......++|+++||..|++.++||++.+. +..+.+|++.|
T Consensus 243 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~--~~~~~~~~~~~ 318 (322)
T 1xwi_A 243 --VRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHD--LLKLKKFTEDF 318 (322)
T ss_dssp --EEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHH--HHHHHHHHHTT
T ss_pred --hccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHH
Confidence 0000000 0000 00012358999999999999999999774 56799999999
Q ss_pred cCCC
Q 003253 822 GEGG 825 (836)
Q Consensus 822 G~~~ 825 (836)
|.+|
T Consensus 319 ~~~~ 322 (322)
T 1xwi_A 319 GQEG 322 (322)
T ss_dssp CSCC
T ss_pred ccCC
Confidence 9875
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.2e-35 Score=325.73 Aligned_cols=293 Identities=38% Similarity=0.659 Sum_probs=237.4
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.++|++++|++.+++.|++.+..|+..++.+... ..|++++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 346899999999999999999999999999988753 467789999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 687 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~L 687 (836)
.+.|..+..++.+|..++...|+||||||||.+.+.+.. .......++.++++..+++... ...+++||+|||.++.+
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~atn~~~~l 167 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQL 167 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGT-SCCCEEEEEEESCGGGS
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhccccc-cCCceEEEEecCChhhC
Confidence 999999999999999999999999999999999876532 2333456778889999988753 34679999999999999
Q ss_pred cHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 688 DEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 766 (836)
Q Consensus 688 d~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~ 766 (836)
++++++||+..+++++|+.++|.+||+.++.+.... .+.++..|+..++||+++||.++|+.|+..++++.........
T Consensus 168 d~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~ 247 (322)
T 3eie_A 168 DSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 247 (322)
T ss_dssp CHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEE
T ss_pred CHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999999999999999999999999887654 6788999999999999999999999999999998644210000
Q ss_pred H-HHHhc-CCCCCCC---------------CCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCCC
Q 003253 767 A-AAMAE-GKPAPAL---------------SGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGS 826 (836)
Q Consensus 767 ~-~a~~~-~~~~~~~---------------~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~~ 826 (836)
. ..... ....+.. ......++|+++||..|++.++||++.+ .+..+.+|++.||.+|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~--~~~~~~~~~~~~~~~~~ 322 (322)
T 3eie_A 248 VSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNED--DLLKQEQFTRDFGQEGN 322 (322)
T ss_dssp CC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTT--HHHHHHHHHHHHC----
T ss_pred hccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhcCCCC
Confidence 0 00000 0000000 0111236899999999999999999987 46689999999999874
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=4.3e-35 Score=325.80 Aligned_cols=297 Identities=37% Similarity=0.648 Sum_probs=231.6
Q ss_pred CCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeecc
Q 003253 524 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS 603 (836)
Q Consensus 524 i~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s 603 (836)
+....+.++|++|+|++.+++.|++.+.+|+..++.|... ..+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 41 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~ 118 (355)
T 2qp9_X 41 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118 (355)
T ss_dssp ------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred hcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH
Confidence 3334456899999999999999999999999999998753 46778999999999999999999999999999999999
Q ss_pred ccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC
Q 003253 604 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 683 (836)
Q Consensus 604 ~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~ 683 (836)
++.+.+.|..+..++.+|..++...|+||||||||.+.+.+.. .......++.++++..+++.... ..+++||+|||.
T Consensus 119 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vI~atn~ 196 (355)
T 2qp9_X 119 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGND-SQGVLVLGATNI 196 (355)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESC
T ss_pred HHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHHHhhccccc-CCCeEEEeecCC
Confidence 9999999999999999999999999999999999999876533 23445677888899999887532 367999999999
Q ss_pred CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 684 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 762 (836)
Q Consensus 684 ~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~ 762 (836)
++.+++++++||+..+++++|+.++|.+||+.++...+.. .+.++..||..++||+|+||.++|++|++.++++.....
T Consensus 197 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~ 276 (355)
T 2qp9_X 197 PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 276 (355)
T ss_dssp GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999877653 678899999999999999999999999999998864320
Q ss_pred HHHH--HHHHhcCCCCCC--------------C-CCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCC
Q 003253 763 KKER--AAAMAEGKPAPA--------------L-SGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 825 (836)
Q Consensus 763 ~~~~--~~a~~~~~~~~~--------------~-~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~ 825 (836)
.... ..........+. . ......++|+++||..|++.++||++.+. +..+.+|++.||.+|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~--~~~~~~~~~~~~~~~ 354 (355)
T 2qp9_X 277 HFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDD--LLKQEQFTRDFGQEG 354 (355)
T ss_dssp EEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHH--HHHHHHHHHHTC---
T ss_pred hhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhccCC
Confidence 0000 000000000000 0 00112367999999999999999999774 567999999999887
Q ss_pred C
Q 003253 826 S 826 (836)
Q Consensus 826 ~ 826 (836)
+
T Consensus 355 ~ 355 (355)
T 2qp9_X 355 N 355 (355)
T ss_dssp -
T ss_pred C
Confidence 4
No 13
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.9e-34 Score=329.89 Aligned_cols=295 Identities=38% Similarity=0.647 Sum_probs=234.4
Q ss_pred cCCCCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCCcceee
Q 003253 523 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINIS 601 (836)
Q Consensus 523 ii~~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-~~~~i~v~ 601 (836)
.+....+.++|+||+|++.+++.|++.+.+|+.+++.|... ..|++++||+||||||||++|+++|+++ +.+|+.++
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 33344567899999999999999999999999999988632 4567899999999999999999999999 89999999
Q ss_pred ccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEecc
Q 003253 602 MSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 681 (836)
Q Consensus 602 ~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTT 681 (836)
++++.+.|.|..+..++.+|..++...|+||||||||.+++.+... ......++.++++..+++... ...+++||+||
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~at 278 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGAT 278 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEE
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCccc-CCCCEEEEecC
Confidence 9999999999999999999999999999999999999998766443 334557788999999988753 24679999999
Q ss_pred CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 003253 682 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 760 (836)
Q Consensus 682 n~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~ 760 (836)
|.++.++++++|||+..+.+++|+.++|..||+.++...+.. .+.++..||..++||+|+||..+|+.|+..++++...
T Consensus 279 n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 279 NIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp SCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999876643 6788999999999999999999999999999998653
Q ss_pred HHHHHHHHHHhcCC----------CCC--------------CC-CCCCCCccccHHHHHHHHHHhccCccccccchhhHH
Q 003253 761 KEKKERAAAMAEGK----------PAP--------------AL-SGCADIRPLNMDDFKYAHERVCASVSSESVNMSELL 815 (836)
Q Consensus 761 ~~~~~~~~a~~~~~----------~~~--------------~~-~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~ 815 (836)
....... ..... ..+ .. ......++|+++||..|++.++||++.+. +..+.
T Consensus 359 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~--~~~~~ 434 (444)
T 2zan_A 359 ATHFKKV--RGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQD--LLKLK 434 (444)
T ss_dssp CSEEEEE--CCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHH--HHHHH
T ss_pred hhhhhhh--ccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHH--HHHHH
Confidence 2100000 00000 000 00 00112368999999999999999998774 56799
Q ss_pred HHHHHhcCCC
Q 003253 816 QWNELYGEGG 825 (836)
Q Consensus 816 ~W~~i~G~~~ 825 (836)
+|++.||.+|
T Consensus 435 ~~~~~~~~~~ 444 (444)
T 2zan_A 435 KFTEDFGQEG 444 (444)
T ss_dssp HHTSSCTTTC
T ss_pred HHHHHHcCCC
Confidence 9999999875
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.2e-34 Score=311.60 Aligned_cols=287 Identities=36% Similarity=0.611 Sum_probs=233.1
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
+.++|++++|++.+++.|++.+..++.+++.|...+. .++.++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 4689999999999999999999999999999887653 456899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 686 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~ 686 (836)
++|..+..++.+|..|....|+||||||||.+...+... .......+++++++..++++.. ..+++||+|||.++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 166 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccc
Confidence 999999999999999999999999999999998654221 0111223566778888887653 367999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 687 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 764 (836)
Q Consensus 687 Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~ 764 (836)
+++++++ ||+..++++.|+.++|.+|++.++.+.++..++++..++..+.||+|+||.++|++|+..++++.+.....
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~ 246 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 246 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999 99999999999999999999999998887778899999999999999999999999999999887644321
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHh
Q 003253 765 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELY 821 (836)
Q Consensus 765 ~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~ 821 (836)
.......... ...........+|+++||..|+++++||++.+. +..+.+|++.|
T Consensus 247 ~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~--~~~~~~~~~~~ 300 (301)
T 3cf0_A 247 RERERQTNPS-AMEVEEDDPVPEIRRDHFEEAMRFARRSVSDND--IRKYEMFAQTL 300 (301)
T ss_dssp --------------------CCCBCHHHHHHHHTTCCCSSCHHH--HHHHHHHHHHH
T ss_pred hhhhcccccc-cccccccccCCccCHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHh
Confidence 1100000000 000001122468999999999999999998763 55788999875
No 15
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-33 Score=308.28 Aligned_cols=277 Identities=43% Similarity=0.761 Sum_probs=231.5
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
+.++|++++|++.+++.|++.+..++.+++.|... ..+++++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL--RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc--cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 35799999999999999999999998888887643 3567899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 688 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld 688 (836)
+.|..+..++.+|..+....|+||||||||.|.+.+.. ..+....+++++++..+++.......+++||+|||.++.++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 99999999999999999999999999999999876532 23445677888899999887655567899999999999999
Q ss_pred HHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 689 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERA 767 (836)
Q Consensus 689 ~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~ 767 (836)
+++++||+..+.++.|+.++|.++++.++...+.. .+.++..|+..+.||+++||..||+.|+..+++++.......
T Consensus 236 ~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~-- 313 (357)
T 3d8b_A 236 EAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIAT-- 313 (357)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------
T ss_pred HHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhcc--
Confidence 99999999999999999999999999999876544 567789999999999999999999999999888642211100
Q ss_pred HHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCC
Q 003253 768 AAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEG 824 (836)
Q Consensus 768 ~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~ 824 (836)
......++|+++||..|++.++||+..+ ....+++|+++||.+
T Consensus 314 ------------~~~~~~~~i~~~d~~~al~~~~ps~~~~--~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 314 ------------ITPDQVRPIAYIDFENAFRTVRPSVSPK--DLELYENWNKTFGCG 356 (357)
T ss_dssp -----------------CCCBCHHHHHHHHHHHGGGCCCC--CHHHHHHHHHHHSCC
T ss_pred ------------ccccccCCcCHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHhCCC
Confidence 0112347899999999999999999877 456789999999975
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2e-33 Score=323.99 Aligned_cols=281 Identities=37% Similarity=0.607 Sum_probs=228.5
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 609 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~ 609 (836)
.++|++++|++..++.|++.+..++..++.|...+. .++.++||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 367999999999999999999999999999987654 4568999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcH
Q 003253 610 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 689 (836)
Q Consensus 610 ~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~ 689 (836)
.|+.+..++.+|..|....|+||||||||.+.+.+... ......++...|+..+++... ..+++||+|||.++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCH
Confidence 99999999999999999999999999999998776432 234556788888888887643 467999999999999999
Q ss_pred HHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 690 AVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERA 767 (836)
Q Consensus 690 ~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~ 767 (836)
++++ ||+..++++.|+.++|.+||+.++....+..+.++..++..+.||+++||..||++|+..++++.....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i----- 430 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI----- 430 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTC-----
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccc-----
Confidence 9999 999999999999999999999999988888888999999999999999999999999999887632100
Q ss_pred HHHhcCCCCCCCC--CCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCC
Q 003253 768 AAMAEGKPAPALS--GCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGG 825 (836)
Q Consensus 768 ~a~~~~~~~~~~~--~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~ 825 (836)
. ...... .......++++||..|++++.||..++.....|.++|+||||-..
T Consensus 431 -----~-~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 431 -----D-LEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp -----C-TTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred -----c-ccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 0 000000 001224699999999999999999999988899999999999754
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=299.24 Aligned_cols=261 Identities=37% Similarity=0.603 Sum_probs=207.4
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
+.++|+|++|+++++++|++.+.+|+..++.+...++. +++|++|+||||||||+|++++|..++.+++.+++.++.+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~-~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLV-TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC-CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46899999999999999999999999999999877654 44789999999999999999999999999999999999888
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 688 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld 688 (836)
+.|+.+..++.+|..+....|+++|+||+|.++..+... ......++.++++..+++... ...++++++||.|+.+|
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCC
Confidence 889889999999999988899999999999987654321 122334567888888988753 36789999999999999
Q ss_pred HHHHh--hccccccCCCCCHHHHHHHHHHHHhhC---CCCCcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 003253 689 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKE---DLSPDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIKEILEK 761 (836)
Q Consensus 689 ~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~---~l~~d~dl~~LA~~t--~G~sg~DL~~L~~~A~~~air~~~~~ 761 (836)
++++| ||++.|++++|+.++|.+||+.+++.. .+..++++..+|..+ +||+|+||.++|++|++.++++.+..
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 999999999999999999999998642 345688999999875 59999999999999999999875432
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccc
Q 003253 762 EKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSES 808 (836)
Q Consensus 762 ~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~ 808 (836)
.... ......+|+++||++|+++++||++.+.
T Consensus 241 ~~~~---------------~~~~~~~i~~~df~~al~~~~ps~~~~~ 272 (274)
T 2x8a_A 241 QKSG---------------NEKGELKVSHKHFEEAFKKVRSSISKKD 272 (274)
T ss_dssp ------------------------CCBCHHHHHHHHTTCCCCC----
T ss_pred cccc---------------ccccCCeecHHHHHHHHHHhcCCCChhh
Confidence 2110 0112247999999999999999998763
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.98 E-value=5.9e-32 Score=292.06 Aligned_cols=278 Identities=45% Similarity=0.763 Sum_probs=223.2
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+.++|++++|++.+++.|++.+..+..+++.+... ..++.++||+||||||||++|+++|++++.+|+.++++++.+
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL--RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 456899999999999999999999988888887643 356789999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCccc-CcccEEEEeccCCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DTERILVLAATNRPFD 686 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~-~~~~vlVIaTTn~~~~ 686 (836)
.+.|..+..++.+|..+....|+||||||+|.+...+... .......+.+.++..+++.... ...+++||++||.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 9999999999999999999999999999999998765321 1222345667777777776432 2257999999999999
Q ss_pred CcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 687 LDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKE 765 (836)
Q Consensus 687 Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~ 765 (836)
+++++++||+..+.+++|+.++|..|++.++...+.. .+.++..++..+.||+++||..+|+.|+..++++........
T Consensus 172 l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~ 251 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKC 251 (297)
T ss_dssp BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC------
T ss_pred CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999999999876543 566789999999999999999999999999988743211110
Q ss_pred HHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCC
Q 003253 766 RAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEG 824 (836)
Q Consensus 766 ~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~ 824 (836)
.......+|+++||..|+..++||+..+ .+..+.+|++.||..
T Consensus 252 --------------~~~~~~~~i~~~d~~~a~~~~~~s~~~~--~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 252 --------------LDISAMRAITEQDFHSSLKRIRRSVAPQ--SLNSYEKWSQDYGDI 294 (297)
T ss_dssp ----------------CCCCCCCCHHHHHHHTTSCCCSSCHH--HHHHHHHHC------
T ss_pred --------------ccccccCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCe
Confidence 0112346799999999999999998866 356789999999964
No 19
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-32 Score=303.09 Aligned_cols=212 Identities=16% Similarity=0.251 Sum_probs=177.9
Q ss_pred ccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 22 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 22 ~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
-+|||+++.++ |+.|..|.+++..+|+||++. .+--.+.+++|||+||||| ++++||||+|++++++|+.++.+
T Consensus 143 p~v~~~dIgGl--~~~k~~l~e~v~~Pl~~pe~f--~~~gi~~prGvLL~GPPGT--GKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 143 PDSTYDMVGGL--TKQIKEIKEVIELPVKHPELF--ESLGIAQPKGVILYGPPGT--GKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CSCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHH--HHHTCCCCCCEEEESCSSS--SHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHH--HhCCCCCCCceEEeCCCCC--CHHHHHHHHHHhhCCCceEEEhH
Confidence 47999999999 999999999999999999984 3322455899999999999 99999999999999999999986
Q ss_pred ccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 003253 102 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 181 (836)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (836)
.+..
T Consensus 217 ~l~s---------------------------------------------------------------------------- 220 (405)
T 4b4t_J 217 ELVQ---------------------------------------------------------------------------- 220 (405)
T ss_dssp GGSC----------------------------------------------------------------------------
T ss_pred Hhhc----------------------------------------------------------------------------
Confidence 6655
Q ss_pred cccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccccc
Q 003253 182 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 261 (836)
Q Consensus 182 ~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (836)
+|+|.
T Consensus 221 ---------k~vGe------------------------------------------------------------------ 225 (405)
T 4b4t_J 221 ---------KYIGE------------------------------------------------------------------ 225 (405)
T ss_dssp ---------SSTTH------------------------------------------------------------------
T ss_pred ---------cccch------------------------------------------------------------------
Confidence 45554
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc-----------chhhHHHHHHhcCC--CcEEEEe
Q 003253 262 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----------DSYSTFKSRLEKLP--DKVIVIG 328 (836)
Q Consensus 262 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~-----------~~~~~l~~~l~~l~--g~v~vIg 328 (836)
....|+++|+.+.. .+||||||||||.++..+. ...+.|...|+.+. .+|+|||
T Consensus 226 ----------se~~vr~lF~~Ar~---~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIa 292 (405)
T 4b4t_J 226 ----------GSRMVRELFVMARE---HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIM 292 (405)
T ss_dssp ----------HHHHHHHHHHHHHH---TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEE
T ss_pred ----------HHHHHHHHHHHHHH---hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEe
Confidence 67889999999999 9999999999999775211 12344445555543 4999999
Q ss_pred eeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHh
Q 003253 329 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 408 (836)
Q Consensus 329 s~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~ 408 (836)
+||+++ .||+|++|||| |..+|+|++|+.++|.+||+.+
T Consensus 293 ATNrpd----------------------~LDpAllRpGR-------------------fD~~I~i~lPd~~~R~~Il~~~ 331 (405)
T 4b4t_J 293 ATNRLD----------------------ILDPALLRPGR-------------------IDRKIEFPPPSVAARAEILRIH 331 (405)
T ss_dssp EESCSS----------------------SSCHHHHSTTS-------------------SCCEEECCCCCHHHHHHHHHHH
T ss_pred ccCChh----------------------hCCHhHcCCCc-------------------CceEEEcCCcCHHHHHHHHHHH
Confidence 999998 69999999999 9999999999999999999998
Q ss_pred hHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 409 LDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 409 l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
+ ++..+..+++....+..+.||+|+||..+|.+|.+
T Consensus 332 ~----~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~ 367 (405)
T 4b4t_J 332 S----RKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGM 367 (405)
T ss_dssp H----TTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred h----cCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 8 45566777777777888888888888888876655
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=8.7e-31 Score=294.53 Aligned_cols=277 Identities=45% Similarity=0.796 Sum_probs=221.7
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
..++|++++|++.+++.|.+.+..+..+++.|... ..+++++||+||||||||++|+++|.+++.+|+.++++++.+.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGL--RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhccc--CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 45789999999999999999999888888877644 3566899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 688 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld 688 (836)
+.|..+..++.+|..++...|+||||||||.|+..+.. ..+....++...++..+++.......+++||+|||.++.++
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 99999999999999999999999999999999866532 23344567788888888887665567899999999999999
Q ss_pred HHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 689 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERA 767 (836)
Q Consensus 689 ~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~ 767 (836)
+++++||...+.++.|+.++|.+||+.++...+.. .+.++..|+..+.||++++|..||+.|+..+++++......
T Consensus 267 ~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~--- 343 (389)
T 3vfd_A 267 EAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVK--- 343 (389)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC------
T ss_pred HHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhh---
Confidence 99999999899999999999999999999876554 56678999999999999999999999999988864211100
Q ss_pred HHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCC
Q 003253 768 AAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEG 824 (836)
Q Consensus 768 ~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~ 824 (836)
.........|+++||..|++.+.+++..+ .+..+.+|++.||..
T Consensus 344 -----------~~~~~~~~~i~~~d~~~al~~~~~s~~~~--~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 344 -----------NMSASEMRNIRLSDFTESLKKIKRSVSPQ--TLEAYIRWNKDFGDT 387 (389)
T ss_dssp -----------CCSSSCCCCCCHHHHHHHHHHCCCSSCHH--HHHHHHHHHHHCC--
T ss_pred -----------ccchhhcCCcCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHhCCc
Confidence 01122446899999999999999998765 456899999999974
No 21
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-31 Score=297.14 Aligned_cols=214 Identities=17% Similarity=0.236 Sum_probs=178.0
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+.-+|||+++.++ |+.|..|.+++..+|+||++. .+.-.+.+++|||+||||| ++++||||+|++++++|+.++
T Consensus 175 ~~p~v~~~DIgGl--d~~k~~L~e~v~~Pl~~pe~f--~~~Gi~~prGvLLyGPPGT--GKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 175 KSPTESYSDIGGL--ESQIQEIKESVELPLTHPELY--EEMGIKPPKGVILYGAPGT--GKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp SSCCCCGGGTCSC--HHHHHHHHHHHHHHHHCCHHH--HHHTCCCCSEEEEESSTTT--THHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCcceecCcH--HHHHHHHHHHHHHHHhCHHHH--HhCCCCCCCCCceECCCCc--hHHHHHHHHHHHhCCCEEEEE
Confidence 4678999999999 999999999999999999984 3333566899999999999 999999999999999999999
Q ss_pred ccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 003253 100 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 179 (836)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (836)
.+.|..
T Consensus 249 ~s~l~s-------------------------------------------------------------------------- 254 (437)
T 4b4t_I 249 GSELIQ-------------------------------------------------------------------------- 254 (437)
T ss_dssp SGGGCC--------------------------------------------------------------------------
T ss_pred HHHhhh--------------------------------------------------------------------------
Confidence 866665
Q ss_pred cccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccc
Q 003253 180 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 259 (836)
Q Consensus 180 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (836)
+|+|.
T Consensus 255 -----------k~vGe---------------------------------------------------------------- 259 (437)
T 4b4t_I 255 -----------KYLGD---------------------------------------------------------------- 259 (437)
T ss_dssp -----------SSSSH----------------------------------------------------------------
T ss_pred -----------ccCch----------------------------------------------------------------
Confidence 45554
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC--------cc---hhhHHHHHHhcC--CCcEEE
Q 003253 260 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SD---SYSTFKSRLEKL--PDKVIV 326 (836)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~--------~~---~~~~l~~~l~~l--~g~v~v 326 (836)
....++.+|+.+.+ .+||||||||||.++..+ .+ ..+.|...|+.. .++|+|
T Consensus 260 ------------sek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViV 324 (437)
T 4b4t_I 260 ------------GPRLCRQIFKVAGE---NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKV 324 (437)
T ss_dssp ------------HHHHHHHHHHHHHH---TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEE
T ss_pred ------------HHHHHHHHHHHHHh---cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEE
Confidence 57899999999999 999999999999977521 12 223344444544 358999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHH
Q 003253 327 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 406 (836)
Q Consensus 327 Igs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk 406 (836)
||+||+++ .||+|++|||| |..+|+|++|+.++|.+||+
T Consensus 325 IaATNrpd----------------------~LDpALlRpGR-------------------fD~~I~v~lPd~~~R~~Il~ 363 (437)
T 4b4t_I 325 IMATNKIE----------------------TLDPALIRPGR-------------------IDRKILFENPDLSTKKKILG 363 (437)
T ss_dssp EEEESCST----------------------TCCTTSSCTTT-------------------EEEEECCCCCCHHHHHHHHH
T ss_pred EEeCCChh----------------------hcCHHHhcCCc-------------------eeEEEEcCCcCHHHHHHHHH
Confidence 99999998 69999999999 99999999999999999999
Q ss_pred HhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 407 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 407 ~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
.++ ++..+..+++....+..+.||+|+||..+|.+|.+
T Consensus 364 ~~l----~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~ 401 (437)
T 4b4t_I 364 IHT----SKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGL 401 (437)
T ss_dssp HHH----TTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred HHh----cCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 998 44556677777777777888888888877776655
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=2.3e-30 Score=277.72 Aligned_cols=269 Identities=39% Similarity=0.636 Sum_probs=217.8
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
+.++|++++|++.+++.|.+.+..++..++.+...+. .++.++||+||||||||++|+++|+.++.+++.+++.++.+.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC-CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 3578999999999999999999999999988877654 455899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 686 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~ 686 (836)
+.|..+..+..+|..+....|+||||||+|.+.+.+... .........+..++..+++... ..+++||+|||.++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDI 168 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGG
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchh
Confidence 999999999999999999999999999999998766432 1222334556666777766543 357999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 687 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 764 (836)
Q Consensus 687 Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~ 764 (836)
+++++++ ||+..+.++.|+.++|.+|++.++....+..+.++..++..+.|++++||..+|+.|...++++
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~------- 241 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE------- 241 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHT-------
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999999 9999999999999999999999998888778889999999999999999999999999888764
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCCC
Q 003253 765 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGS 826 (836)
Q Consensus 765 ~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~~ 826 (836)
....|+++||.+|++.+.+..........++-.|...+|..++
T Consensus 242 -------------------~~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (285)
T 3h4m_A 242 -------------------LRDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHHH 284 (285)
T ss_dssp -------------------TCSSBCHHHHHHHHHHHHHHHCCC-------------------
T ss_pred -------------------ccCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCCC
Confidence 1246999999999999987766666667788889988887653
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=2.4e-30 Score=296.33 Aligned_cols=265 Identities=38% Similarity=0.595 Sum_probs=218.1
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
...++|+|++|++.+++++++.+.. +..+..|...+. ++++++||+||||||||++|+++|.+++.+|+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH
Confidence 5678999999999999999998865 667777776654 45588999999999999999999999999999999999999
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
.+.|..+..++.+|..|....|+||||||||.+...+... +......+++++++..++++.. ..+++||++||.++
T Consensus 88 ~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPD 165 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGG
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChh
Confidence 9999988999999999999999999999999997665321 2223345677888888887643 36799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.++++++| ||++.+.++.|+.++|.+|++.++++.++..++++..+|..+.||+++||.++|++|+..+.++
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~------ 239 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE------ 239 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc------
Confidence 99999998 9999999999999999999999999888878889999999999999999999999999877653
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccch----hhHHHHHHHhc
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNM----SELLQWNELYG 822 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~----~~~~~W~~i~G 822 (836)
....|+++||..|+.++.+........+ ...+.|.++|+
T Consensus 240 --------------------~~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~ 282 (476)
T 2ce7_A 240 --------------------GRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGH 282 (476)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHH
T ss_pred --------------------CCCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhh
Confidence 1246999999999999987654443232 35667877764
No 24
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-31 Score=296.14 Aligned_cols=214 Identities=16% Similarity=0.273 Sum_probs=179.1
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+.-+|||+++.++ ++.|..|.+++..+|+||++. .+.-.+.+++|||+||||| ++++||||+|++++++|+.++
T Consensus 174 ~~p~~t~~digGl--~~~k~~l~e~v~~pl~~pe~f--~~~g~~~prGvLLyGPPGT--GKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 174 EKPTETYSDVGGL--DKQIEELVEAIVLPMKRADKF--KDMGIRAPKGALMYGPPGT--GKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHTHHHHHCSHHH--HHHCCCCCCEEEEESCTTS--SHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCChHhcCcH--HHHHHHHHHHHHHHHhCHHHH--HhCCCCCCCeeEEECcCCC--CHHHHHHHHHHHhCCCEEEEe
Confidence 4568999999999 999999999999999999984 3333456899999999999 999999999999999999999
Q ss_pred ccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 003253 100 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 179 (836)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (836)
.+.|.+
T Consensus 248 ~s~l~~-------------------------------------------------------------------------- 253 (434)
T 4b4t_M 248 APQLVQ-------------------------------------------------------------------------- 253 (434)
T ss_dssp GGGGCS--------------------------------------------------------------------------
T ss_pred hhhhhh--------------------------------------------------------------------------
Confidence 876665
Q ss_pred cccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccc
Q 003253 180 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 259 (836)
Q Consensus 180 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (836)
+|+|.
T Consensus 254 -----------~~vGe---------------------------------------------------------------- 258 (434)
T 4b4t_M 254 -----------MYIGE---------------------------------------------------------------- 258 (434)
T ss_dssp -----------SCSSH----------------------------------------------------------------
T ss_pred -----------cccch----------------------------------------------------------------
Confidence 55555
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc--------c---hhhHHHHHHhcCC--CcEEE
Q 003253 260 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------D---SYSTFKSRLEKLP--DKVIV 326 (836)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~--------~---~~~~l~~~l~~l~--g~v~v 326 (836)
....++.+|+.+.. .+||||||||||.++..+. + ..+.|...|+... ++|+|
T Consensus 259 ------------se~~ir~lF~~A~~---~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViV 323 (434)
T 4b4t_M 259 ------------GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKV 323 (434)
T ss_dssp ------------HHHHHHHHHHHHHH---HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEE
T ss_pred ------------HHHHHHHHHHHHHh---cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEE
Confidence 57899999999999 9999999999999776221 1 1233444455543 48999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHH
Q 003253 327 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 406 (836)
Q Consensus 327 Igs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk 406 (836)
||+||+++ .||+|++|||| |..+|+|++|+.++|.+||+
T Consensus 324 IaaTNrp~----------------------~LD~AllRpGR-------------------fD~~I~i~lPd~~~R~~Il~ 362 (434)
T 4b4t_M 324 LAATNRVD----------------------VLDPALLRSGR-------------------LDRKIEFPLPSEDSRAQILQ 362 (434)
T ss_dssp EEECSSCC----------------------CCCTTTCSTTS-------------------EEEEEECCCCCHHHHHHHHH
T ss_pred EEeCCCch----------------------hcCHhHhcCCc-------------------eeEEEEeCCcCHHHHHHHHH
Confidence 99999998 69999999999 99999999999999999999
Q ss_pred HhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 407 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 407 ~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
.++ ++..+..+++....+..+.||+|+||..+|.+|.+
T Consensus 363 ~~~----~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~ 400 (434)
T 4b4t_M 363 IHS----RKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGM 400 (434)
T ss_dssp HHH----HHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHH
T ss_pred HHh----cCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 998 44566777777777888888888888888876655
No 25
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-30 Score=293.31 Aligned_cols=214 Identities=18% Similarity=0.276 Sum_probs=177.2
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+.-+|||+++.++ ++.|..|.+++..+|+||++.+ +-=.+.+++|||+||||| ++++||||+|++++++|+.++
T Consensus 174 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~f~--~~g~~~prGvLL~GPPGt--GKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 174 EQGEITFDGIGGL--TEQIRELREVIELPLKNPEIFQ--RVGIKPPKGVLLYGPPGT--GKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp ESCSSCSGGGCSC--HHHHHHHHHHHHHHHHCHHHHH--HHCCCCCCEEEEESCTTS--SHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCChhHhCCh--HHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCeEEEECCCCC--cHHHHHHHHHHHhCCCEEEEe
Confidence 3568999999999 9999999999999999999852 222467899999999999 999999999999999999999
Q ss_pred ccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 003253 100 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 179 (836)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (836)
.+.+.+
T Consensus 248 ~s~l~s-------------------------------------------------------------------------- 253 (437)
T 4b4t_L 248 ASGIVD-------------------------------------------------------------------------- 253 (437)
T ss_dssp GGGTCC--------------------------------------------------------------------------
T ss_pred hhhhcc--------------------------------------------------------------------------
Confidence 866665
Q ss_pred cccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccc
Q 003253 180 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 259 (836)
Q Consensus 180 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (836)
+|+|.
T Consensus 254 -----------k~~Ge---------------------------------------------------------------- 258 (437)
T 4b4t_L 254 -----------KYIGE---------------------------------------------------------------- 258 (437)
T ss_dssp -----------SSSSH----------------------------------------------------------------
T ss_pred -----------ccchH----------------------------------------------------------------
Confidence 45544
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC--------cc---hhhHHHHHHhcCC--CcEEE
Q 003253 260 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SD---SYSTFKSRLEKLP--DKVIV 326 (836)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~--------~~---~~~~l~~~l~~l~--g~v~v 326 (836)
....++.+|+.+.. .+||||||||||.++..+ .+ ..+.|...|+... ++|+|
T Consensus 259 ------------se~~ir~~F~~A~~---~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv 323 (437)
T 4b4t_L 259 ------------SARIIREMFAYAKE---HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI 323 (437)
T ss_dssp ------------HHHHHHHHHHHHHH---SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE
T ss_pred ------------HHHHHHHHHHHHHh---cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEE
Confidence 57889999999999 999999999999977521 11 2334445555543 48999
Q ss_pred EeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHH
Q 003253 327 IGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWK 406 (836)
Q Consensus 327 Igs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk 406 (836)
||+||+++ .||+|++|||| |..+|+|++|+.++|.+||+
T Consensus 324 I~ATNrp~----------------------~LDpAllRpGR-------------------fD~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 324 IMATNRPD----------------------TLDPALLRPGR-------------------LDRKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp EEEESSTT----------------------SSCTTTTSTTS-------------------EEEEECCCCCCHHHHHHHHH
T ss_pred EEecCCch----------------------hhCHHHhCCCc-------------------cceeeecCCcCHHHHHHHHH
Confidence 99999998 69999999999 99999999999999999999
Q ss_pred HhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 407 HQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 407 ~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
.++. +.....+++....+..|.||+|+||..+|.+|.+
T Consensus 363 ~~~~----~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~ 400 (437)
T 4b4t_L 363 IHTA----KVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGF 400 (437)
T ss_dssp HHHH----TSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred HHhc----CCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 9984 4455667777777778888888888877776654
No 26
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=4.4e-29 Score=264.24 Aligned_cols=246 Identities=40% Similarity=0.619 Sum_probs=207.2
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+..+|++++|++.+++.+.+.+.. +..++.+...+. .++.++||+||||||||++|+++|+.++.+++.++++++..
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 4467999999999999999988764 666666655443 44578999999999999999999999999999999999998
Q ss_pred hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
.+.|..+..++.+|..+....|+++||||+|.+...+... .......++++.++..+++... ..+++||+|||.++
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 161 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCch
Confidence 8999999999999999999899999999999997655321 1223334667788888887643 46799999999999
Q ss_pred CCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 686 DLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEK 763 (836)
Q Consensus 686 ~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~ 763 (836)
.+++++++ ||+..+.+++|+.++|.+|++.++...++.++.++..++..+.||+++||.++|+.|+..+.++
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 235 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 235 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998888778888999999999999999999999999887653
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccC
Q 003253 764 KERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCAS 803 (836)
Q Consensus 764 ~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS 803 (836)
....|+++||..|++.+...
T Consensus 236 --------------------~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 236 --------------------NKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp --------------------TCSSBCHHHHHHHHHHHTTC
T ss_pred --------------------CCCcccHHHHHHHHHHHhcC
Confidence 12469999999999988643
No 27
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-30 Score=288.85 Aligned_cols=213 Identities=15% Similarity=0.205 Sum_probs=177.9
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCcccc-cccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 98 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~-~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~ 98 (836)
+.-+|||+++.++ ++.|..|.+++..+|++|++. +++ .+.+++|||+||||| ++++||||+|++++++|+.+
T Consensus 202 e~P~vt~~DIgGl--~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGT--GKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 202 EKPDVTYSDVGGC--KDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGT--GKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp SSCSCCCSSCTTC--HHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTS--SHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCC--cHHHHHHHHHhccCCCeEEE
Confidence 3457999999999 999999999999999999985 332 457899999999999 99999999999999999999
Q ss_pred eccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 003253 99 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 178 (836)
Q Consensus 99 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (836)
+.+.|.+
T Consensus 275 s~s~L~s------------------------------------------------------------------------- 281 (467)
T 4b4t_H 275 IGSELVQ------------------------------------------------------------------------- 281 (467)
T ss_dssp EGGGGCC-------------------------------------------------------------------------
T ss_pred EhHHhhc-------------------------------------------------------------------------
Confidence 9876666
Q ss_pred ccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccc
Q 003253 179 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 258 (836)
Q Consensus 179 ~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~ 258 (836)
+|+|.
T Consensus 282 ------------k~vGe--------------------------------------------------------------- 286 (467)
T 4b4t_H 282 ------------KYVGE--------------------------------------------------------------- 286 (467)
T ss_dssp ------------CSSSH---------------------------------------------------------------
T ss_pred ------------ccCCH---------------------------------------------------------------
Confidence 55555
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc-----------chhhHHHHHHhcC--CCcEE
Q 003253 259 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----------DSYSTFKSRLEKL--PDKVI 325 (836)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~-----------~~~~~l~~~l~~l--~g~v~ 325 (836)
..+.++.+|+.+.. .+||||||||+|.++..+. ...+.+...|+.. .++|+
T Consensus 287 -------------sek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~Vi 350 (467)
T 4b4t_H 287 -------------GARMVRELFEMART---KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIK 350 (467)
T ss_dssp -------------HHHHHHHHHHHHHH---TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEE
T ss_pred -------------HHHHHHHHHHHHHh---cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEE
Confidence 57889999999999 9999999999999775221 1223333444443 35899
Q ss_pred EEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHH
Q 003253 326 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 405 (836)
Q Consensus 326 vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Il 405 (836)
|||+||+++ .||+|++|||| |..+|+|++|+.++|.+||
T Consensus 351 VIaATNrpd----------------------~LDpALlRpGR-------------------FD~~I~i~lPd~~~R~~Il 389 (467)
T 4b4t_H 351 VMFATNRPN----------------------TLDPALLRPGR-------------------IDRKVEFSLPDLEGRANIF 389 (467)
T ss_dssp EEEECSCTT----------------------SBCHHHHSTTT-------------------CCEEECCCCCCHHHHHHHH
T ss_pred EEeCCCCcc----------------------cCChhhhcccc-------------------ccEEEEeCCcCHHHHHHHH
Confidence 999999998 69999999999 9999999999999999999
Q ss_pred HHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 406 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 406 k~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
+.++ +++.+..+++....+..+.||+|+||..+|.+|.+
T Consensus 390 k~~l----~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~ 428 (467)
T 4b4t_H 390 RIHS----KSMSVERGIRWELISRLCPNSTGAELRSVCTEAGM 428 (467)
T ss_dssp HHHH----TTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred HHHh----cCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 9988 45566777777777778888888888888876655
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=265.43 Aligned_cols=249 Identities=35% Similarity=0.568 Sum_probs=191.5
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhc
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 609 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~ 609 (836)
.++|++++|++.+++.+++.+.. +..++.|...+. .+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 47899999999999999998865 666666665553 4558999999999999999999999999999999999998888
Q ss_pred ccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCc---hHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC
Q 003253 610 FGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 686 (836)
Q Consensus 610 ~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~---~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~ 686 (836)
.+..+..++.+|..+....|+||||||+|.+...+.... ........+..++..+++... ..+++||+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 888888999999999998999999999999976553211 012223456667777776543 357999999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCccc--HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 687 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVD--FDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 762 (836)
Q Consensus 687 Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~d--l~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~ 762 (836)
+++++++ ||+..++++.|+.++|.+|++.++...++..+.+ ...++..+.||+++||.++|+.|+..+.++
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~----- 232 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE----- 232 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---------
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 9999999 9999999999999999999999998877664433 478999999999999999999999887653
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccc
Q 003253 763 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSES 808 (836)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~ 808 (836)
....|+++||..|++.+.++.....
T Consensus 233 ---------------------~~~~i~~~d~~~a~~~~~~~~~~~~ 257 (262)
T 2qz4_A 233 ---------------------GHTSVHTLNFEYAVERVLAGTAKKS 257 (262)
T ss_dssp -------------------------CCBCCHHHHHHHHHHHHHCC-
T ss_pred ---------------------CCCCCCHHHHHHHHHHhccChhhhh
Confidence 1246899999999999987765543
No 29
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-29 Score=284.32 Aligned_cols=213 Identities=14% Similarity=0.214 Sum_probs=176.9
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCccccc-ccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAK-YTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 98 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~-~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~ 98 (836)
+..+|||+++.++ ++.|..|.+++..+|++|++.+ ++ .+.+++|||+||||| ++++||||+|++++++|+.+
T Consensus 165 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGt--GKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 165 EKPDVTYADVGGL--DMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGT--GKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTT--THHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCC--CHHHHHHHHHHHhCCCeEEE
Confidence 3457999999999 9999999999999999999852 32 356899999999999 99999999999999999999
Q ss_pred eccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 003253 99 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 178 (836)
Q Consensus 99 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (836)
+.+.+.+
T Consensus 238 ~~~~l~~------------------------------------------------------------------------- 244 (428)
T 4b4t_K 238 NGSEFVH------------------------------------------------------------------------- 244 (428)
T ss_dssp EGGGTCC-------------------------------------------------------------------------
T ss_pred ecchhhc-------------------------------------------------------------------------
Confidence 9866655
Q ss_pred ccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccc
Q 003253 179 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 258 (836)
Q Consensus 179 ~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~ 258 (836)
+|+|.
T Consensus 245 ------------~~~Ge--------------------------------------------------------------- 249 (428)
T 4b4t_K 245 ------------KYLGE--------------------------------------------------------------- 249 (428)
T ss_dssp ------------SSCSH---------------------------------------------------------------
T ss_pred ------------cccch---------------------------------------------------------------
Confidence 44544
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC-----------cchhhHHHHHHhcC--CCcEE
Q 003253 259 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN-----------SDSYSTFKSRLEKL--PDKVI 325 (836)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~-----------~~~~~~l~~~l~~l--~g~v~ 325 (836)
....|+.+|+.+.. .+||||||||+|.++..+ ....+.|...|+.+ ..+|+
T Consensus 250 -------------~e~~ir~lF~~A~~---~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~ 313 (428)
T 4b4t_K 250 -------------GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVK 313 (428)
T ss_dssp -------------HHHHHHHHHHHHHH---TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEE
T ss_pred -------------hHHHHHHHHHHHHH---cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEE
Confidence 57889999999999 999999999999977521 12345555666655 34899
Q ss_pred EEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEec-CCChHHHHHH
Q 003253 326 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIH-MPQDEALLAS 404 (836)
Q Consensus 326 vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~-lP~~e~rl~I 404 (836)
|||+||+++ .||+|++|||| |..+|+|+ +|+.++|..|
T Consensus 314 vI~aTN~~~----------------------~LD~AllRpGR-------------------fd~~I~~p~lPd~~~R~~I 352 (428)
T 4b4t_K 314 VIMATNRAD----------------------TLDPALLRPGR-------------------LDRKIEFPSLRDRRERRLI 352 (428)
T ss_dssp EEEEESCSS----------------------SCCHHHHSSSS-------------------EEEEEECCSSCCHHHHHHH
T ss_pred EEEecCChh----------------------hcChhhhcCCc-------------------ceEEEEcCCCCCHHHHHHH
Confidence 999999998 59999999999 99999995 9999999999
Q ss_pred HHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 405 WKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 405 lk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
|+.++. +..+..+++....+..+.||+|+||..+|.+|.+
T Consensus 353 l~~~~~----~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~ 392 (428)
T 4b4t_K 353 FGTIAS----KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGL 392 (428)
T ss_dssp HHHHHH----SSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhc----CCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 999884 4456667767777777888888888877776654
No 30
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.96 E-value=4.5e-28 Score=294.80 Aligned_cols=399 Identities=16% Similarity=0.204 Sum_probs=225.6
Q ss_pred HHHHHHHHHhhccCCCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCch
Q 003253 275 LINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 354 (836)
Q Consensus 275 ~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~ 354 (836)
.+..+|+.+.. .+|+||||| +..+..+.|++.|+ .|.+.|||+||..++++
T Consensus 255 ~l~~~~~~~~~---~~~~iLfiD-------~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~----------------- 305 (758)
T 3pxi_A 255 RLKKVMDEIRQ---AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDEYRK----------------- 305 (758)
T ss_dssp THHHHHHHHHT---CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTTTHH-----------------
T ss_pred HHHHHHHHHHh---cCCEEEEEc-------CchhHHHHHHHHHh--cCCEEEEeCCChHHHHH-----------------
Confidence 34566676666 789999999 55677777777776 48999999999887422
Q ss_pred hhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhhh--hhhccCCchhHHHHhhcc
Q 003253 355 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSE--TLKMKGNLNHLRTVLGRS 432 (836)
Q Consensus 355 ~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~~--~~~~~~n~~~i~~~l~t~ 432 (836)
+.+++.++.+|| +.|.|++|+.+++.+||+..+.+... .+.+.+........+...
T Consensus 306 ---------------------~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~ 363 (758)
T 3pxi_A 306 ---------------------YIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDR 363 (758)
T ss_dssp ---------------------HHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHH
T ss_pred ---------------------HhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Confidence 123466788899 78999999999999999965543221 112211111111111111
Q ss_pred CCCcCchhhhhhhccccchHHHHHHHHHHHHHH-hhcCCCCCCCcccc-------------cccchhhhhhhHHHH----
Q 003253 433 GLECEGLETLCIRDQSLTNESAEKIVGWALSHH-LMQNPEADPDARLV-------------LSCESIQYGIGIFQA---- 494 (836)
Q Consensus 433 g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~-l~~~~d~~~~~~~~-------------i~~~~~~~~~~~~~~---- 494 (836)
++. +..+...+++.+ ..|..+. +.....+.....+. +...++..+......
T Consensus 364 ~i~----------~~~~p~~ai~ll-~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 432 (758)
T 3pxi_A 364 YIS----------DRFLPDKAIDLI-DEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRL 432 (758)
T ss_dssp SSC----------CSCTTHHHHHHH-HHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred ccc----------cCcCCcHHHHHH-HHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 222 222333333333 2332222 22111111100000 000111111111100
Q ss_pred ------HHHhhhhhhccccccCCHHHHHHHHhcCcCCCCCCcc--------------cchhhhchHHHHHHHHHHHhccc
Q 003253 495 ------IQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGV--------------TFDDIGALENVKDTLKELVMLPL 554 (836)
Q Consensus 495 ------i~~~~~~~~~~~~~~v~~~d~~~~l~~~ii~~~~~~~--------------~~~di~G~~~vk~~L~~~v~~~l 554 (836)
+.+............++.+++... +..+...+.... -..+++|++.+++.+.+.+....
T Consensus 433 ~~~l~~~~~~~~~~~~~~~~~v~~~~i~~~-v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~ 511 (758)
T 3pxi_A 433 REQVEDTKKSWKEKQGQENSEVTVDDIAMV-VSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRAR 511 (758)
T ss_dssp HHHHHHHHSGGGHHHHCC---CCTHHHHHH-HHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcccCcccCHHHHHHH-HHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHH
Confidence 001111111122234556666553 333333221111 12457899999988888776321
Q ss_pred cChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccccHHHHHHHHHHHHhcCCce
Q 003253 555 QRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSV 631 (836)
Q Consensus 555 ~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psI 631 (836)
.. .....+|..++||+||||||||++|+++|+.+ +.+|+.++|+++...+... ...++..+++.+++|
T Consensus 512 ~~-----~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~v 582 (758)
T 3pxi_A 512 AG-----LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSV 582 (758)
T ss_dssp TT-----CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSE
T ss_pred cc-----cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeE
Confidence 10 01123455579999999999999999999998 7899999999988766554 233445556667899
Q ss_pred EEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc-------ccCcccEEEEeccCCCCC------------CcHHHH
Q 003253 632 IFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDTERILVLAATNRPFD------------LDEAVI 692 (836)
Q Consensus 632 L~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~-------~~~~~~vlVIaTTn~~~~------------Ld~~l~ 692 (836)
|||||||.+ ++ .+.+.|+..++... .....+++||+|||.+.. +.|+++
T Consensus 583 l~lDEi~~~-----~~-------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~ 650 (758)
T 3pxi_A 583 VLLDAIEKA-----HP-------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFI 650 (758)
T ss_dssp EEEECGGGS-----CH-------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH
T ss_pred EEEeCcccc-----CH-------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH
Confidence 999999987 32 23344444443321 113357899999997554 789999
Q ss_pred hhccccccCCCCCHHHHHHHHHHHHhhC-------CCC---CcccHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHH
Q 003253 693 RRLPRRLMVNLPDAPNRAKILQVILAKE-------DLS---PDVDFDAIANM--TDGYSGSDLKNLCVTAAHRPIKE 757 (836)
Q Consensus 693 rRf~~~I~v~~P~~~eR~~Il~~~l~~~-------~l~---~d~dl~~LA~~--t~G~sg~DL~~L~~~A~~~air~ 757 (836)
+||+.++.|++|+.+++..|++.++... +.. .+..++.|+.. ...+..++|+++++.+...++.+
T Consensus 651 ~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 651 NRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp TTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHH
T ss_pred hhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887642 221 23345666653 23567788999998887766554
No 31
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.96 E-value=3.1e-28 Score=296.22 Aligned_cols=379 Identities=16% Similarity=0.227 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhc------cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCcc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLL 346 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~------~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~ 346 (836)
...+..+++.+.. .++.||||||+|.+++ +..+..+.|+..|+ .+++.+||++|.++..+
T Consensus 264 e~~l~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~--------- 329 (758)
T 1r6b_X 264 EKRFKALLKQLEQ---DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSN--------- 329 (758)
T ss_dssp HHHHHHHHHHHSS---SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHC---------
T ss_pred HHHHHHHHHHHHh---cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhh---------
Confidence 4456677777766 7899999999999764 23444555555554 47999999999775210
Q ss_pred ccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhh--hhhhccCCchh
Q 003253 347 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDS--ETLKMKGNLNH 424 (836)
Q Consensus 347 ~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~--~~~~~~~n~~~ 424 (836)
..+.|.+|.+||. .+.|.+|+.++|.+||+..+.... +.+.+.++...
T Consensus 330 -----------------------------~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~ 379 (758)
T 1r6b_X 330 -----------------------------IFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVR 379 (758)
T ss_dssp -----------------------------CCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred -----------------------------hhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 0123455778895 899999999999999996553321 11111111100
Q ss_pred HHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccccccchhhhhhhHHHHHHHhhhhhhc
Q 003253 425 LRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQYGIGIFQAIQNESKSLKK 504 (836)
Q Consensus 425 i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~ 504 (836)
..+..+.+ .+.+..+....++ ++..|....... +.....
T Consensus 380 -~~~~~s~~---------~i~~~~lp~~~i~-lld~a~~~~~~~---~~~~~~--------------------------- 418 (758)
T 1r6b_X 380 -AAVELAVK---------YINDRHLPDKAID-VIDEAGARARLM---PVSKRK--------------------------- 418 (758)
T ss_dssp -HHHHHHHH---------HCTTSCTTHHHHH-HHHHHHHHHHHS---SSCCCC---------------------------
T ss_pred -HHHHHhhh---------hcccccCchHHHH-HHHHHHHHHhcc---cccccC---------------------------
Confidence 00000000 0001111122222 222222221110 000011
Q ss_pred cccccCCHHHHHHHHhcCcCCCCCCcccc--------------hhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCc
Q 003253 505 SLKDVVTENEFEKRLLADVIPPSDIGVTF--------------DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK 570 (836)
Q Consensus 505 ~~~~~v~~~d~~~~l~~~ii~~~~~~~~~--------------~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~ 570 (836)
..++.+++...+ ..+...+...+.+ .+++|++.+++.+...+..... .-....+|..
T Consensus 419 ---~~v~~~di~~~~-~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~-----g~~~~~~p~~ 489 (758)
T 1r6b_X 419 ---KTVNVADIESVV-ARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARA-----GLGHEHKPVG 489 (758)
T ss_dssp ---CSCCHHHHHHHH-HHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHT-----TCSCTTSCSE
T ss_pred ---CccCHHHHHHHH-HHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhc-----ccCCCCCCce
Confidence 123333333321 1111111111222 2466777777777766542110 0011235666
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch-----hcccccHHHH-----HHHHHHHHhcCCceEEEccchhh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-----KWFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s-----~~~g~~e~~i-----~~lf~~A~~~~psIL~IDEID~L 640 (836)
++||+||||||||++|+++|+.++.+++.++|+++.. ..+|...+++ ..+....++.+++||||||||.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 8999999999999999999999999999999988743 3344433332 23455666777899999999987
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHhcCCccc-------CcccEEEEeccCCCC-------------------------CCc
Q 003253 641 LGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTERILVLAATNRPF-------------------------DLD 688 (836)
Q Consensus 641 ~~~r~~~~~~~~~~~il~~ll~~ld~~~~~-------~~~~vlVIaTTn~~~-------------------------~Ld 688 (836)
. ..+++.|+..++..... +-.+++||+|||... .+.
T Consensus 570 -----~-------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 637 (758)
T 1r6b_X 570 -----H-------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFT 637 (758)
T ss_dssp -----C-------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSC
T ss_pred -----C-------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcC
Confidence 2 23445555555432211 124688999999754 578
Q ss_pred HHHHhhccccccCCCCCHHHHHHHHHHHHhhC-------CC--C-CcccHHHHHHHc--CCCcHHHHHHHHHHHHHHHHH
Q 003253 689 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DL--S-PDVDFDAIANMT--DGYSGSDLKNLCVTAAHRPIK 756 (836)
Q Consensus 689 ~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~-------~l--~-~d~dl~~LA~~t--~G~sg~DL~~L~~~A~~~air 756 (836)
+++++||+.++.|++|+.+++..|++.++.+. ++ . .+..++.|+... ..+..++|.++++.+...++.
T Consensus 638 ~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~ 717 (758)
T 1r6b_X 638 PEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHH
T ss_pred HHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHH
Confidence 99999999899999999999999999988632 11 1 334456666544 356688999999988877655
Q ss_pred H
Q 003253 757 E 757 (836)
Q Consensus 757 ~ 757 (836)
+
T Consensus 718 ~ 718 (758)
T 1r6b_X 718 N 718 (758)
T ss_dssp H
T ss_pred H
Confidence 4
No 32
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=1.5e-28 Score=283.01 Aligned_cols=264 Identities=36% Similarity=0.560 Sum_probs=222.0
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
+.++|+|++|++.++.++++.+.. +..+..|...+. ..++++||+||||||||+||++||.+++.+|+.++++++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~-~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 568999999999999999998864 556666665554 445789999999999999999999999999999999999888
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 686 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~ 686 (836)
+.|.....++.+|..+....|+|+||||||.+...+... ..+....+.+++++..+++... ...+++|++||.|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 888888889999999988889999999999997655321 1234445678888888988753 357899999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 687 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 764 (836)
Q Consensus 687 Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~ 764 (836)
+|++++| ||++.+.|+.|+.++|.+||+.+++...+..++++..+|..+.|++|+||.++|++|+..+.++
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~------- 254 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 254 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT-------
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 8999999999999999999999988777778889999999999999999999999999876542
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccch----hhHHHHHHHhc
Q 003253 765 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNM----SELLQWNELYG 822 (836)
Q Consensus 765 ~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~----~~~~~W~~i~G 822 (836)
....|+++||..|++++.++.......+ ...+.|.++++
T Consensus 255 -------------------~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~ 297 (499)
T 2dhr_A 255 -------------------GRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGH 297 (499)
T ss_dssp -------------------CCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHH
T ss_pred -------------------CCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHH
Confidence 2246999999999999988765544333 35678888765
No 33
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.95 E-value=4.4e-26 Score=280.52 Aligned_cols=208 Identities=18% Similarity=0.266 Sum_probs=145.5
Q ss_pred hhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh--
Q 003253 534 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 608 (836)
Q Consensus 534 ~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~-- 608 (836)
.+++|++.+++.+...+...... -....+|..++||+||||||||++|+++|..+ +.+|+.++|+++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g-----~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAG-----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGG-----CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcc-----cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 56789999988888877531100 01123455789999999999999999999999 789999999876432
Q ss_pred ---cccccHHHH-----HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCccc-------Ccc
Q 003253 609 ---WFGEGEKYV-----KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTE 673 (836)
Q Consensus 609 ---~~g~~e~~i-----~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~-------~~~ 673 (836)
.+|....++ ..+....+..+++|||||||+.+ + ..+++.|+..++..... +-.
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----~-------~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----H-------PDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGC--------------CHHHHHHHCSSEEEEESSGGGS-----C-------HHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----C-------HHHHHHHHHHhccCceECCCCCEeccC
Confidence 333332222 33445555667799999999987 2 24555566666543211 124
Q ss_pred cEEEEeccCC--------------------------CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC-------
Q 003253 674 RILVLAATNR--------------------------PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE------- 720 (836)
Q Consensus 674 ~vlVIaTTn~--------------------------~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~------- 720 (836)
+++||+|||. ...+.+++++||+.++.+.+|+.+++..|++.++...
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 6889999997 2357889999999999999999999999999887631
Q ss_pred CCC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHH
Q 003253 721 DLS---PDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIKEI 758 (836)
Q Consensus 721 ~l~---~d~dl~~LA~~t~--G~sg~DL~~L~~~A~~~air~~ 758 (836)
+.. .+..++.|+.... .++.++|.++++.+...++.+.
T Consensus 781 ~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred CceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 111 3344667777655 6788999999999988776654
No 34
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=1e-26 Score=245.66 Aligned_cols=241 Identities=37% Similarity=0.591 Sum_probs=198.4
Q ss_pred CCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc
Q 003253 527 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 606 (836)
Q Consensus 527 ~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~ 606 (836)
..+.++|++++|++.++..+++.+.. +..+..+...+. ..+.+++|+||||||||+|++++|..++.+++.+++.++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~-~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTC-CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 44578999999999999999987764 445555655544 3346799999999999999999999999999999998887
Q ss_pred hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 607 SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 607 s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
..+.+.....+..+|..+....|+++++||||.+...+... .......+.++.++..+++... ...++++++||.|
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p 164 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 164 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCc
Confidence 77777777888999999988889999999999997654321 1223445667788888887643 3568999999999
Q ss_pred CCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 685 FDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKE 762 (836)
Q Consensus 685 ~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~ 762 (836)
+.++++++| ||+..+.++.|+.++|.+||+.++....+..+.++..+|..+.||+++||.++|+.|+..+.++
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~----- 239 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE----- 239 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 8999999999999999999999988777778888999999999999999999999999876553
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHH
Q 003253 763 KKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAH 797 (836)
Q Consensus 763 ~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al 797 (836)
....|+++||++|+
T Consensus 240 ---------------------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 ---------------------GRRKITMKDLEEAA 253 (254)
T ss_dssp ---------------------TCSSBCHHHHHHHT
T ss_pred ---------------------cCCCcCHHHHHHHh
Confidence 12469999999886
No 35
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=2.5e-29 Score=267.37 Aligned_cols=253 Identities=36% Similarity=0.554 Sum_probs=204.1
Q ss_pred CCCCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc
Q 003253 526 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 605 (836)
Q Consensus 526 ~~~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l 605 (836)
+..+..+|++++|++.+++.+++.+.. +..++.|...+. .++.++||+||||||||++|+++|++++.+++.++++.+
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 344568899999999999999998764 667777765443 445789999999999999999999999999999999999
Q ss_pred chhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCch---HHHHHHHHHHHHHHhcCCcccCcccEEEEeccC
Q 003253 606 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE---HEAMRKMKNEFMVNWDGLRTKDTERILVLAATN 682 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~---~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn 682 (836)
...+.|..+..++.+|..+....|+||||||+|.+...+...+. ......+++.++..+++... ...+++||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn 159 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATN 159 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBS
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecC
Confidence 88888888777888999999989999999999999765421100 00011234556666666543 235689999999
Q ss_pred CCCCCcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 003253 683 RPFDLDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILE 760 (836)
Q Consensus 683 ~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~ 760 (836)
.++.+++++++ ||+..+.++.|+.++|.++|+.++....+..+.++..++..+.||+++||.++|+.|+..+.++
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~--- 236 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN--- 236 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS---
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---
Confidence 99999999999 9999999999999999999999998877777788899999999999999999999998765321
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCcccc
Q 003253 761 KEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSE 807 (836)
Q Consensus 761 ~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~ 807 (836)
....|+.+||..|++.+.|+...+
T Consensus 237 -----------------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 -----------------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp -----------------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred -----------------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 235799999999999999887765
No 36
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=2.6e-25 Score=238.40 Aligned_cols=239 Identities=38% Similarity=0.592 Sum_probs=196.5
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
+.++|++++|++.++..+++.+.. +..+..+...+.. .+.+++|+||||||||+|+++++..++.+++.+++.++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~-~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCC-CCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 568999999999999999987764 4445555554433 34679999999999999999999999999999999888777
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC--chHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCC
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFD 686 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~--~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~ 686 (836)
+.+.....+..+|..+....|+++++||||.+...+... .........+..++..+++... ...++++++||.|+.
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 190 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTS
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchh
Confidence 777777788999999988889999999999987554321 1123345667778888887643 356899999999999
Q ss_pred CcHHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 687 LDEAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKK 764 (836)
Q Consensus 687 Ld~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~ 764 (836)
+++++++ ||+..+.++.|+.++|.+||+.++....+..+.++..+|..+.|++++||.++|+.|+..+.++
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------- 263 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------- 263 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-------
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-------
Confidence 9999998 8999999999999999999999988777777888999999999999999999999998876542
Q ss_pred HHHHHHhcCCCCCCCCCCCCCccccHHHHHHHH
Q 003253 765 ERAAAMAEGKPAPALSGCADIRPLNMDDFKYAH 797 (836)
Q Consensus 765 ~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al 797 (836)
....|+++||++|+
T Consensus 264 -------------------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 264 -------------------GRRKITMKDLEEAA 277 (278)
T ss_dssp -------------------TCCSBCHHHHHHHT
T ss_pred -------------------CCCCcCHHHHHHHh
Confidence 12469999999886
No 37
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=1.8e-26 Score=281.45 Aligned_cols=287 Identities=37% Similarity=0.600 Sum_probs=242.9
Q ss_pred CcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchh
Q 003253 529 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 608 (836)
Q Consensus 529 ~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~ 608 (836)
..++|++|+|++.+++.|++.+..++.+++.|...+. .++.++||+||||||||++|+++|..++.+++.+++.++.+.
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3589999999999999999999999999999987664 456899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc
Q 003253 609 WFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD 688 (836)
Q Consensus 609 ~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld 688 (836)
+.|+.+..++.+|..+....|++|||||||.++..+... ......++...++..+++... ...+++|++||.++.++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~--~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCT--TSCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhcc--cccEEEecccCCchhcC
Confidence 999999999999999999999999999999998766432 234456778888888888754 36799999999999999
Q ss_pred HHHHh--hccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003253 689 EAVIR--RLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKER 766 (836)
Q Consensus 689 ~~l~r--Rf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~ 766 (836)
+++.+ ||+..+.++.|+.++|.+|++.++....+..+.++..++..+.||+++++..+|..|+..++++.........
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~ 434 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh
Confidence 99998 9999999999999999999999998888888889999999999999999999999999888775322100000
Q ss_pred HHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccccccchhhHHHHHHHhcCCCCcc
Q 003253 767 AAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSSESVNMSELLQWNELYGEGGSRR 828 (836)
Q Consensus 767 ~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~~i~G~~~~r~ 828 (836)
.... ........++++||..++....|+...+.....+.+.|++++|+..+++
T Consensus 435 ~~~~---------~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~ 487 (806)
T 1ypw_A 435 ETID---------AEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKR 487 (806)
T ss_dssp HHCC---------HHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHH
T ss_pred hccc---------hhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhh
Confidence 0000 0001224688899999999999998888777788999999999988865
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=1.2e-22 Score=219.58 Aligned_cols=174 Identities=20% Similarity=0.291 Sum_probs=132.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHH----HhcCCceEEEccchhhh
Q 003253 566 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVIFVDEVDSML 641 (836)
Q Consensus 566 ~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A----~~~~psIL~IDEID~L~ 641 (836)
.+++.++||+||||||||++|+++|++++.+|+.++++++.+.+.|..+..++.+|..| ++..|+||||||||.++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 35568999999999999999999999999999999999999999999999999999998 57789999999999998
Q ss_pred cCCCCCch-HHHHHHHHHHHHHHhcCCc---------ccCcccEEEEeccCCCCCCcHHHHh--hccccccCCCCCHHHH
Q 003253 642 GRRENPGE-HEAMRKMKNEFMVNWDGLR---------TKDTERILVLAATNRPFDLDEAVIR--RLPRRLMVNLPDAPNR 709 (836)
Q Consensus 642 ~~r~~~~~-~~~~~~il~~ll~~ld~~~---------~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v~~P~~~eR 709 (836)
+.+..... ......+...|+..+++.. .....+++||+|||.++.++++++| ||+..+. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 75432211 1122345677777776432 1134679999999999999999998 9987776 5799999
Q ss_pred HHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHH
Q 003253 710 AKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKN 745 (836)
Q Consensus 710 ~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~ 745 (836)
.+|++.++... +.+.+.++..++||++++|..
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 99999888654 456889999999999998864
No 39
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.5e-21 Score=210.98 Aligned_cols=211 Identities=18% Similarity=0.279 Sum_probs=164.9
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHh-CCeEEEE
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYF-GAKLLIF 98 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~-~~~ll~~ 98 (836)
+.-+|+|+++.++ ++.|..|.+++..+++++++.+ .....++.|||+||||| ++++||||+|+++ +++++.+
T Consensus 5 ~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~---~~~~~~~~iLL~GppGt--GKT~la~ala~~~~~~~~~~i 77 (322)
T 1xwi_A 5 ERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFT---GKRTPWRGILLFGPPGT--GKSYLAKAVATEANNSTFFSI 77 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHHHHHHHCGGGSC---TTCCCCSEEEEESSSSS--CHHHHHHHHHHHTTSCEEEEE
T ss_pred cCCCCCHHHhcCH--HHHHHHHHHHHHHHHhCHHHHh---CCCCCCceEEEECCCCc--cHHHHHHHHHHHcCCCcEEEE
Confidence 4457999999999 9999999999999999999854 23456789999999999 9999999999999 8999888
Q ss_pred eccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 003253 99 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 178 (836)
Q Consensus 99 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (836)
+.+.+.+
T Consensus 78 ~~~~l~~------------------------------------------------------------------------- 84 (322)
T 1xwi_A 78 SSSDLVS------------------------------------------------------------------------- 84 (322)
T ss_dssp ECCSSCC-------------------------------------------------------------------------
T ss_pred EhHHHHh-------------------------------------------------------------------------
Confidence 8755544
Q ss_pred ccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccc
Q 003253 179 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 258 (836)
Q Consensus 179 ~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~ 258 (836)
+|+|.
T Consensus 85 ------------~~~g~--------------------------------------------------------------- 89 (322)
T 1xwi_A 85 ------------KWLGE--------------------------------------------------------------- 89 (322)
T ss_dssp ------------SSCCS---------------------------------------------------------------
T ss_pred ------------hhhhH---------------------------------------------------------------
Confidence 22222
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC----cc----hhhHHHHHHhcC---CCcEEEE
Q 003253 259 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SD----SYSTFKSRLEKL---PDKVIVI 327 (836)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~----~~----~~~~l~~~l~~l---~g~v~vI 327 (836)
....++.+|+.+.. .+|+||||||||.+...+ .+ ..+.+...|+.+ .++|+||
T Consensus 90 -------------~~~~~~~lf~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI 153 (322)
T 1xwi_A 90 -------------SEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVL 153 (322)
T ss_dssp -------------CHHHHHHHHHHHHH---TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEE
T ss_pred -------------HHHHHHHHHHHHHh---cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEE
Confidence 25678889999988 899999999999976522 12 233344444543 4689999
Q ss_pred eeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHH
Q 003253 328 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 407 (836)
Q Consensus 328 gs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~ 407 (836)
|+||+++ .+|.++.+||+..++|++|+.++|.+||+.
T Consensus 154 ~atn~~~-------------------------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~~ 190 (322)
T 1xwi_A 154 GATNIPW-------------------------------------------VLDSAIRRRFEKRIYIPLPEPHARAAMFKL 190 (322)
T ss_dssp EEESCTT-------------------------------------------TSCHHHHHTCCEEEECCCCCHHHHHHHHHH
T ss_pred EecCCcc-------------------------------------------cCCHHHHhhcCeEEEeCCcCHHHHHHHHHH
Confidence 9999986 234567778999999999999999999998
Q ss_pred hhHhhhhhhhcc-CCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 408 QLDRDSETLKMK-GNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 408 ~l~e~~~~~~~~-~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
++... ... .+.+....+..+.|++|+||..||..+.+
T Consensus 191 ~l~~~----~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~ 228 (322)
T 1xwi_A 191 HLGTT----QNSLTEADFRELGRKTDGYSGADISIIVRDALM 228 (322)
T ss_dssp HHTTC----CBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHT
T ss_pred HHhcC----CCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 87432 221 33445556777889999999999988877
No 40
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=206.93 Aligned_cols=215 Identities=17% Similarity=0.263 Sum_probs=156.0
Q ss_pred ccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 22 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 22 ~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
-+|+|+++..+ ++.|..|.+++..++++++..+.. ++ ..+++|||+||+|| ++++|+||||...+..++.++..
T Consensus 5 ~~~~~~di~g~--~~~~~~l~~~i~~~~~~~~~l~~~-~l-~~~~GvlL~Gp~Gt--GKTtLakala~~~~~~~i~i~g~ 78 (274)
T 2x8a_A 5 PNVTWADIGAL--EDIREELTMAILAPVRNPDQFKAL-GL-VTPAGVLLAGPPGC--GKTLLAKAVANESGLNFISVKGP 78 (274)
T ss_dssp -------CCHH--HHHHHHHHHHHTHHHHSHHHHHHT-TC-CCCSEEEEESSTTS--CHHHHHHHHHHHTTCEEEEEETT
T ss_pred CCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHc-CC-CCCCeEEEECCCCC--cHHHHHHHHHHHcCCCEEEEEcH
Confidence 47999999999 999999999999999998875321 23 33456999999999 99999999999999988888753
Q ss_pred ccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 003253 102 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 181 (836)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (836)
.+..
T Consensus 79 ~l~~---------------------------------------------------------------------------- 82 (274)
T 2x8a_A 79 ELLN---------------------------------------------------------------------------- 82 (274)
T ss_dssp TTCS----------------------------------------------------------------------------
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 3322
Q ss_pred cccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccccc
Q 003253 182 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 261 (836)
Q Consensus 182 ~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (836)
+|+
T Consensus 83 ---------~~~-------------------------------------------------------------------- 85 (274)
T 2x8a_A 83 ---------MYV-------------------------------------------------------------------- 85 (274)
T ss_dssp ---------STT--------------------------------------------------------------------
T ss_pred ---------hhh--------------------------------------------------------------------
Confidence 111
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC--------cchhhHHHHHHhcCC--CcEEEEeeec
Q 003253 262 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKLP--DKVIVIGSHT 331 (836)
Q Consensus 262 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~--------~~~~~~l~~~l~~l~--g~v~vIgs~~ 331 (836)
++ ....+..+|+.+.. ..|+|+||||+|.+...+ .+..+.+...|+... ..+++++++|
T Consensus 86 ------~~--~~~~i~~vf~~a~~---~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn 154 (274)
T 2x8a_A 86 ------GE--SERAVRQVFQRAKN---SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATN 154 (274)
T ss_dssp ------HH--HHHHHHHHHHHHHH---TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEES
T ss_pred ------hH--HHHHHHHHHHHHHh---cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecC
Confidence 11 35678889998877 899999999999855311 233444445554432 3799999999
Q ss_pred cCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 332 HTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 332 ~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
+++ +||+|++|||| |...|+|++|+.++|.+||+.++..
T Consensus 155 ~p~----------------------~LD~al~r~gR-------------------fd~~i~~~~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 155 RPD----------------------IIDPAILRPGR-------------------LDKTLFVGLPPPADRLAILKTITKN 193 (274)
T ss_dssp CGG----------------------GSCHHHHSTTS-------------------SCEEEECCSCCHHHHHHHHHHHTTT
T ss_pred Chh----------------------hCCHhhcCccc-------------------CCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 997 79999999999 9999999999999999999977643
Q ss_pred hhhhhhccCCchhHHHHhh--ccCCCcCchhhhhhhccc
Q 003253 412 DSETLKMKGNLNHLRTVLG--RSGLECEGLETLCIRDQS 448 (836)
Q Consensus 412 ~~~~~~~~~n~~~i~~~l~--t~g~s~~DL~~Lc~~~~~ 448 (836)
. ....+..+++....+.. +.||+|+||..+|.++.+
T Consensus 194 ~-~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~ 231 (274)
T 2x8a_A 194 G-TKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASI 231 (274)
T ss_dssp T-BTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHH
T ss_pred c-cCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHH
Confidence 1 12334455555445544 458888888888877665
No 41
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.84 E-value=4.9e-21 Score=207.71 Aligned_cols=214 Identities=20% Similarity=0.327 Sum_probs=167.2
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCcccc-cccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEE
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIF 98 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~-~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~ 98 (836)
+.-+++|+++.++ +++|..|.+++..++++++.. +++ ...++.|||+||||| ++++||||||++.+++++.+
T Consensus 8 ~~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~---~~~~~~vLL~Gp~Gt--GKT~la~ala~~~~~~~i~v 80 (301)
T 3cf0_A 8 EVPQVTWEDIGGL--EDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGC--GKTLLAKAIANECQANFISI 80 (301)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHC---CCCCSEEEEECSSSS--SHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcC---CCCCceEEEECCCCc--CHHHHHHHHHHHhCCCEEEE
Confidence 3457999999999 999999999999999999874 222 345788999999999 99999999999999999988
Q ss_pred eccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccc
Q 003253 99 DSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGT 178 (836)
Q Consensus 99 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (836)
+.+.+..
T Consensus 81 ~~~~l~~------------------------------------------------------------------------- 87 (301)
T 3cf0_A 81 KGPELLT------------------------------------------------------------------------- 87 (301)
T ss_dssp CHHHHHH-------------------------------------------------------------------------
T ss_pred EhHHHHh-------------------------------------------------------------------------
Confidence 8544322
Q ss_pred ccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccc
Q 003253 179 SKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNV 258 (836)
Q Consensus 179 ~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~ 258 (836)
+|+|.
T Consensus 88 ------------~~~g~--------------------------------------------------------------- 92 (301)
T 3cf0_A 88 ------------MWFGE--------------------------------------------------------------- 92 (301)
T ss_dssp ------------HHHTT---------------------------------------------------------------
T ss_pred ------------hhcCc---------------------------------------------------------------
Confidence 23332
Q ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC-----------cchhhHHHHHHhcC--CCcEE
Q 003253 259 TDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN-----------SDSYSTFKSRLEKL--PDKVI 325 (836)
Q Consensus 259 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~-----------~~~~~~l~~~l~~l--~g~v~ 325 (836)
....+..+|+.+.. ..|+||||||||.+.... .+..+.|...|+.+ ..+|+
T Consensus 93 -------------~~~~~~~~f~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~ 156 (301)
T 3cf0_A 93 -------------SEANVREIFDKARQ---AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 156 (301)
T ss_dssp -------------CTTHHHHHHHHHHH---TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEE
T ss_pred -------------hHHHHHHHHHHHHh---cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEE
Confidence 12235677888887 889999999999966411 22345566666654 34899
Q ss_pred EEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHH
Q 003253 326 VIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 405 (836)
Q Consensus 326 vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Il 405 (836)
|||+||+++ .+|+|++|||| |...|+|++|+.++|.+||
T Consensus 157 vi~atn~~~----------------------~ld~al~r~gR-------------------f~~~i~i~~p~~~~r~~il 195 (301)
T 3cf0_A 157 IIGATNRPD----------------------IIDPAILRPGR-------------------LDQLIYIPLPDEKSRVAIL 195 (301)
T ss_dssp EEEEESCGG----------------------GSCGGGGSTTS-------------------SCEEEECCCCCHHHHHHHH
T ss_pred EEEecCCcc----------------------ccChHHhcCCc-------------------cceEEecCCcCHHHHHHHH
Confidence 999999987 58999999999 9999999999999999999
Q ss_pred HHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhcccc
Q 003253 406 KHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSL 449 (836)
Q Consensus 406 k~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~ 449 (836)
+.++.+ ..+..+++....+..+.|++|.||..+|..+...
T Consensus 196 ~~~l~~----~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~ 235 (301)
T 3cf0_A 196 KANLRK----SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 235 (301)
T ss_dssp HHHHTT----SCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHcc----CCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 988743 3344555555666778888899998888877663
No 42
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.83 E-value=4.3e-20 Score=205.00 Aligned_cols=217 Identities=17% Similarity=0.235 Sum_probs=159.0
Q ss_pred ccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 003253 15 GILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 94 (836)
Q Consensus 15 ~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ 94 (836)
..+..+.-.++|+++.++ +..|..|.+++..+++++++.+. ....++.|||+||||| ++++||||+|++++++
T Consensus 39 ~~~~~~~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppGt--GKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPGT--GKSYLAKAVATEANST 111 (355)
T ss_dssp --------CCCGGGSCCG--GGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTTS--CHHHHHHHHHHHHTCE
T ss_pred hhhcccCCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCCC--cHHHHHHHHHHHhCCC
Confidence 344456778999999999 99999999999999999998542 3456788999999999 9999999999999999
Q ss_pred EEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 003253 95 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 174 (836)
Q Consensus 95 ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (836)
++.++.+.+.+
T Consensus 112 ~~~v~~~~l~~--------------------------------------------------------------------- 122 (355)
T 2qp9_X 112 FFSVSSSDLVS--------------------------------------------------------------------- 122 (355)
T ss_dssp EEEEEHHHHHS---------------------------------------------------------------------
T ss_pred EEEeeHHHHhh---------------------------------------------------------------------
Confidence 99998655443
Q ss_pred ccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccc
Q 003253 175 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 254 (836)
Q Consensus 175 ~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~ 254 (836)
+|+|.
T Consensus 123 ----------------~~~g~----------------------------------------------------------- 127 (355)
T 2qp9_X 123 ----------------KWMGE----------------------------------------------------------- 127 (355)
T ss_dssp ----------------CC--------------------------------------------------------------
T ss_pred ----------------hhcch-----------------------------------------------------------
Confidence 22222
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhcc----Ccc----hhhHHHHHHhcC---CCc
Q 003253 255 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG----NSD----SYSTFKSRLEKL---PDK 323 (836)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~----~~~----~~~~l~~~l~~l---~g~ 323 (836)
....++.+|+.+.. .+|+||||||||.+... ..+ +.+.|...|+.+ ..+
T Consensus 128 -----------------~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 128 -----------------SEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp -----------------CHHHHHHHHHHHHH---TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred -----------------HHHHHHHHHHHHHH---cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 25567889999888 89999999999986642 122 234444455543 458
Q ss_pred EEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHH
Q 003253 324 VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLA 403 (836)
Q Consensus 324 v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~ 403 (836)
|+|||+||+++ .++.++.+||...+.|++|+.++|..
T Consensus 188 v~vI~atn~~~-------------------------------------------~ld~al~rRf~~~i~i~~P~~~~r~~ 224 (355)
T 2qp9_X 188 VLVLGATNIPW-------------------------------------------QLDSAIRRRFERRIYIPLPDLAARTT 224 (355)
T ss_dssp EEEEEEESCGG-------------------------------------------GSCHHHHHTCCEEEECCCCCHHHHHH
T ss_pred eEEEeecCCcc-------------------------------------------cCCHHHHcccCEEEEeCCcCHHHHHH
Confidence 99999999886 33456777899999999999999999
Q ss_pred HHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 404 SWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 404 Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
||+.++.... ..+ .+.+....+..+.|++|+||..+|..+.+
T Consensus 225 il~~~l~~~~--~~~-~~~~l~~la~~t~G~sg~dl~~l~~~A~~ 266 (355)
T 2qp9_X 225 MFEINVGDTP--SVL-TKEDYRTLGAMTEGYSGSDIAVVVKDALM 266 (355)
T ss_dssp HHHHHHTTSC--BCC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCC--CCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9998774321 111 23344455666778888888888877666
No 43
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.82 E-value=7.4e-20 Score=200.26 Aligned_cols=211 Identities=17% Similarity=0.222 Sum_probs=162.9
Q ss_pred ccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 20 TNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 20 ~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+.-+++|+++.++ +..|..|.+++..+++++++.+. ....++.|||+||||| ++++||||+|++.+++++.++
T Consensus 11 ~~~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~---~~~~~~~vLl~GppGt--GKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 11 EKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPGT--GKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHTHHHHHCGGGCCT---TCCCCCEEEEECSSSS--CHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCHHHhcCh--HHHHHHHHHHHHHHHhCHHHHhc---CCCCCCeEEEECCCCC--cHHHHHHHHHHHHCCCEEEEc
Confidence 4567999999999 99999999999999999998543 3345789999999999 999999999999999999998
Q ss_pred ccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccc
Q 003253 100 SHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTS 179 (836)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (836)
.+.+.+
T Consensus 84 ~~~l~~-------------------------------------------------------------------------- 89 (322)
T 3eie_A 84 SSDLVS-------------------------------------------------------------------------- 89 (322)
T ss_dssp HHHHHT--------------------------------------------------------------------------
T ss_pred hHHHhh--------------------------------------------------------------------------
Confidence 655443
Q ss_pred cccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccc
Q 003253 180 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 259 (836)
Q Consensus 180 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (836)
+|+|.
T Consensus 90 -----------~~~g~---------------------------------------------------------------- 94 (322)
T 3eie_A 90 -----------KWMGE---------------------------------------------------------------- 94 (322)
T ss_dssp -----------TTGGG----------------------------------------------------------------
T ss_pred -----------cccch----------------------------------------------------------------
Confidence 22222
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC----c----chhhHHHHHHhc---CCCcEEEEe
Q 003253 260 DLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----S----DSYSTFKSRLEK---LPDKVIVIG 328 (836)
Q Consensus 260 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~----~----~~~~~l~~~l~~---l~g~v~vIg 328 (836)
....++.+|+.+.. .+|+||||||||.+...+ . ...+.+...|+. ..++|+|||
T Consensus 95 ------------~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 159 (322)
T 3eie_A 95 ------------SEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLG 159 (322)
T ss_dssp ------------HHHHHHHHHHHHHH---TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEE
T ss_pred ------------HHHHHHHHHHHHHh---cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEE
Confidence 46778899999998 899999999999966522 1 223444444543 346899999
Q ss_pred eeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHh
Q 003253 329 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 408 (836)
Q Consensus 329 s~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~ 408 (836)
+||+++ .+|.++.+||...++|++|+.++|.+||+.+
T Consensus 160 atn~~~-------------------------------------------~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~ 196 (322)
T 3eie_A 160 ATNIPW-------------------------------------------QLDSAIRRRFERRIYIPLPDLAARTTMFEIN 196 (322)
T ss_dssp EESCGG-------------------------------------------GSCHHHHHHCCEEEECCCCCHHHHHHHHHHH
T ss_pred ecCChh-------------------------------------------hCCHHHHcccCeEEEeCCCCHHHHHHHHHHH
Confidence 999886 3455677889999999999999999999987
Q ss_pred hHhhhhhhhcc-CCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 409 LDRDSETLKMK-GNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 409 l~e~~~~~~~~-~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
+.+ .... .+.+....+..+.|++++||..+|..+.+
T Consensus 197 ~~~----~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~ 233 (322)
T 3eie_A 197 VGD----TPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 233 (322)
T ss_dssp HTT----CCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTT
T ss_pred hcc----CCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 743 2111 23344455666778888888888877776
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=1.3e-19 Score=207.07 Aligned_cols=216 Identities=18% Similarity=0.269 Sum_probs=158.9
Q ss_pred cCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHh-CCe
Q 003253 16 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYF-GAK 94 (836)
Q Consensus 16 v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~-~~~ 94 (836)
.+..+.-+++|+++.++ +..|..|.+++..+++++++.. . ....++.|||+||||| ++++||||+|+++ +++
T Consensus 123 ~i~~~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~~~--~-~~~~~~~vLL~GppGt--GKT~lA~aia~~~~~~~ 195 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHLFT--G-KRTPWRGILLFGPPGT--GKSYLAKAVATEANNST 195 (444)
T ss_dssp -CBCCCCCCCGGGSCSC--HHHHHHHHHHHTHHHHCTTTTS--G-GGCCCSEEEEECSTTS--SHHHHHHHHHHHCCSSE
T ss_pred ceeccCCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHhh--c-cCCCCceEEEECCCCC--CHHHHHHHHHHHcCCCC
Confidence 34456778999999999 9999999999999999999843 2 3455789999999999 9999999999999 899
Q ss_pred EEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 003253 95 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 174 (836)
Q Consensus 95 ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (836)
++.++.+.+.+
T Consensus 196 ~~~v~~~~l~~--------------------------------------------------------------------- 206 (444)
T 2zan_A 196 FFSISSSDLVS--------------------------------------------------------------------- 206 (444)
T ss_dssp EEEECCC-------------------------------------------------------------------------
T ss_pred EEEEeHHHHHh---------------------------------------------------------------------
Confidence 98888755544
Q ss_pred ccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccc
Q 003253 175 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 254 (836)
Q Consensus 175 ~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~ 254 (836)
+|+|.
T Consensus 207 ----------------~~~g~----------------------------------------------------------- 211 (444)
T 2zan_A 207 ----------------KWLGE----------------------------------------------------------- 211 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------hhcch-----------------------------------------------------------
Confidence 34433
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC----cchhhHHHHHH----hcC---CCc
Q 003253 255 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----SDSYSTFKSRL----EKL---PDK 323 (836)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~----~~~~~~l~~~l----~~l---~g~ 323 (836)
....++.+|+.+.. .+|+||||||||.+...+ .+....+++.| +.+ .++
T Consensus 212 -----------------~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 212 -----------------SEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred -----------------HHHHHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 11235677888877 899999999999965422 22333333333 332 468
Q ss_pred EEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHH
Q 003253 324 VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLA 403 (836)
Q Consensus 324 v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~ 403 (836)
|+|||+||+++ .++.++.+||...+.|++|+.++|..
T Consensus 272 v~vI~atn~~~-------------------------------------------~ld~al~rRf~~~i~i~~P~~~~r~~ 308 (444)
T 2zan_A 272 ILVLGATNIPW-------------------------------------------VLDSAIRRRFEKRIYIPLPEAHARAA 308 (444)
T ss_dssp CEEEEEESCGG-------------------------------------------GSCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred EEEEecCCCcc-------------------------------------------ccCHHHHhhcceEEEeCCcCHHHHHH
Confidence 99999999886 23455777899999999999999999
Q ss_pred HHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 404 SWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 404 Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
||+.++.... ..+ .+.+....+..+.||+|+||..+|..+.+
T Consensus 309 il~~~l~~~~--~~l-~~~~l~~la~~t~G~sgadl~~l~~~a~~ 350 (444)
T 2zan_A 309 MFRLHLGSTQ--NSL-TEADFQELGRKTDGYSGADISIIVRDALM 350 (444)
T ss_dssp HHHHHHTTSC--EEC-CHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCC--CCC-CHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9998874321 111 23445556777889999999999888777
No 45
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.80 E-value=1.3e-18 Score=200.69 Aligned_cols=207 Identities=18% Similarity=0.285 Sum_probs=156.7
Q ss_pred cccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccc
Q 003253 23 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHS 102 (836)
Q Consensus 23 ~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~ 102 (836)
.++|+++.+. +..+..|.+.+..+++++++.+.. =...++.|||+||||| ++++||||+|++.+.+++.++...
T Consensus 200 ~~~~~~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~--g~~~~~~vLL~GppGt--GKT~lAraia~~~~~~fv~vn~~~ 273 (489)
T 3hu3_A 200 EVGYDDIGGC--RKQLAQIKEMVELPLRHPALFKAI--GVKPPRGILLYGPPGT--GKTLIARAVANETGAFFFLINGPE 273 (489)
T ss_dssp CCCGGGCCSC--HHHHHHHHHHTHHHHHCHHHHHHH--TCCCCCEEEEECSTTS--SHHHHHHHHHHHCSSEEEEEEHHH
T ss_pred CCCHHHcCCH--HHHHHHHHHHHHHHhhCHHHHHhc--CCCCCCcEEEECcCCC--CHHHHHHHHHHHhCCCEEEEEchH
Confidence 4789999999 999999999999999999875321 1356778999999999 999999999999999999998644
Q ss_pred cCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccccc
Q 003253 103 LLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKNH 182 (836)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (836)
+.+
T Consensus 274 l~~----------------------------------------------------------------------------- 276 (489)
T 3hu3_A 274 IMS----------------------------------------------------------------------------- 276 (489)
T ss_dssp HHT-----------------------------------------------------------------------------
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 433
Q ss_pred ccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccccccc
Q 003253 183 MLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDLR 262 (836)
Q Consensus 183 ~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 262 (836)
+|+|.
T Consensus 277 --------~~~g~------------------------------------------------------------------- 281 (489)
T 3hu3_A 277 --------KLAGE------------------------------------------------------------------- 281 (489)
T ss_dssp --------SCTTH-------------------------------------------------------------------
T ss_pred --------hhcch-------------------------------------------------------------------
Confidence 11111
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc--------chhhHHHHHHhcC--CCcEEEEeeecc
Q 003253 263 LENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS--------DSYSTFKSRLEKL--PDKVIVIGSHTH 332 (836)
Q Consensus 263 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~--------~~~~~l~~~l~~l--~g~v~vIgs~~~ 332 (836)
....+..+|+.+.. ..|+||||||||.+..... ++.+.|...|+.+ ..+|+|||+||+
T Consensus 282 ---------~~~~~~~~f~~A~~---~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 282 ---------SESNLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp ---------HHHHHHHHHHHHHH---TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred ---------hHHHHHHHHHHHHh---cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 34556788888888 8899999999999766332 2334455555543 458999999999
Q ss_pred CCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhh
Q 003253 333 TDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRD 412 (836)
Q Consensus 333 ~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~ 412 (836)
++ .+|+|++|+|| |...|+|++|+.++|.+||+.++.
T Consensus 350 ~~----------------------~Ld~al~r~gR-------------------f~~~i~i~~P~~~eR~~IL~~~~~-- 386 (489)
T 3hu3_A 350 PN----------------------SIDPALRRFGR-------------------FDREVDIGIPDATGRLEILQIHTK-- 386 (489)
T ss_dssp GG----------------------GBCGGGGSTTS-------------------SCEEEECCCCCHHHHHHHHHHHTT--
T ss_pred cc----------------------ccCHHHhCCCc-------------------CceEEEeCCCCHHHHHHHHHHHHh--
Confidence 86 58899999999 999999999999999999997763
Q ss_pred hhhhhccCCchhHHHHhhccCCCcCchhhhhh
Q 003253 413 SETLKMKGNLNHLRTVLGRSGLECEGLETLCI 444 (836)
Q Consensus 413 ~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~ 444 (836)
...+..+.+....+..+.|+++.||..||.
T Consensus 387 --~~~l~~~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 387 --NMKLADDVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp --TSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred --cCCCcchhhHHHHHHHccCCcHHHHHHHHH
Confidence 334444444444445555555555555544
No 46
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.79 E-value=6.5e-19 Score=201.80 Aligned_cols=215 Identities=18% Similarity=0.252 Sum_probs=155.7
Q ss_pred ccCCCc-cccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCC
Q 003253 15 GILDGT-NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 93 (836)
Q Consensus 15 ~v~~~~-~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~ 93 (836)
.++.++ ...++|+++.+. +..|..|.+.+.. +++++. |..-=...++.|||+||||| ++++||||+|++.++
T Consensus 3 ~~~~~~~~~~~~f~di~G~--~~~~~~l~e~v~~-l~~~~~--~~~~g~~~p~gvLL~GppGt--GKT~Laraia~~~~~ 75 (476)
T 2ce7_A 3 TMYKPSGNKRVTFKDVGGA--EEAIEELKEVVEF-LKDPSK--FNRIGARMPKGILLVGPPGT--GKTLLARAVAGEANV 75 (476)
T ss_dssp --CCCCCSCCCCGGGCCSC--HHHHHHHHHHHHH-HHCTHH--HHTTTCCCCSEEEEECCTTS--SHHHHHHHHHHHHTC
T ss_pred ceeccCCCCCCCHHHhCCc--HHHHHHHHHHHHH-hhChHH--HhhcCCCCCCeEEEECCCCC--CHHHHHHHHHHHcCC
Confidence 455566 889999999999 9999999988754 666554 22111245677999999999 999999999999999
Q ss_pred eEEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 003253 94 KLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTL 173 (836)
Q Consensus 94 ~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (836)
+++.++.+.+..
T Consensus 76 ~f~~is~~~~~~-------------------------------------------------------------------- 87 (476)
T 2ce7_A 76 PFFHISGSDFVE-------------------------------------------------------------------- 87 (476)
T ss_dssp CEEEEEGGGTTT--------------------------------------------------------------------
T ss_pred CeeeCCHHHHHH--------------------------------------------------------------------
Confidence 998887544433
Q ss_pred cccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcc
Q 003253 174 TSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHG 253 (836)
Q Consensus 174 ~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~ 253 (836)
.|+|.
T Consensus 88 -----------------~~~g~---------------------------------------------------------- 92 (476)
T 2ce7_A 88 -----------------LFVGV---------------------------------------------------------- 92 (476)
T ss_dssp -----------------CCTTH----------------------------------------------------------
T ss_pred -----------------HHhcc----------------------------------------------------------
Confidence 11111
Q ss_pred cccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC--------c---chhhHHHHHHhcC--
Q 003253 254 FFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------S---DSYSTFKSRLEKL-- 320 (836)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~--------~---~~~~~l~~~l~~l-- 320 (836)
....+..+|+.+.. ..|+||||||||.+...+ . +..+.|...|+.+
T Consensus 93 ------------------~~~~~r~lf~~A~~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 93 ------------------GAARVRDLFAQAKA---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp ------------------HHHHHHHHHHHHHH---TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG
T ss_pred ------------------cHHHHHHHHHHHHh---cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC
Confidence 23346678888888 899999999999854321 1 2344455555543
Q ss_pred CCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHH
Q 003253 321 PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEA 400 (836)
Q Consensus 321 ~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~ 400 (836)
..+|+||++||+++ .+|+|++|||| |...|.|++|+.++
T Consensus 152 ~~~viVIaaTn~~~----------------------~Ld~allR~gR-------------------Fd~~i~i~~Pd~~~ 190 (476)
T 2ce7_A 152 KEGIIVMAATNRPD----------------------ILDPALLRPGR-------------------FDKKIVVDPPDMLG 190 (476)
T ss_dssp GGTEEEEEEESCGG----------------------GSCGGGGSTTS-------------------SCEEEECCCCCHHH
T ss_pred CCCEEEEEecCChh----------------------hhchhhcccCc-------------------ceeEeecCCCCHHH
Confidence 35899999999987 68999999999 99999999999999
Q ss_pred HHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhh
Q 003253 401 LLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIR 445 (836)
Q Consensus 401 rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~ 445 (836)
|.+||+.++.+ ..+..+++....+..+.|++|+||..+|..
T Consensus 191 R~~Il~~~~~~----~~l~~~v~l~~la~~t~G~sgadL~~lv~~ 231 (476)
T 2ce7_A 191 RKKILEIHTRN----KPLAEDVNLEIIAKRTPGFVGADLENLVNE 231 (476)
T ss_dssp HHHHHHHHHTT----SCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHh----CCCcchhhHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999977743 344444544445555666666666655543
No 47
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=6.9e-19 Score=190.42 Aligned_cols=215 Identities=16% Similarity=0.189 Sum_probs=162.4
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCC--CCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCCcceeecccc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQ--LTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 605 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~--~~~p~~~vLL~GPpGtGKT~LA~alA~~l-------~~~~i~v~~s~l 605 (836)
+++|++.+++.+.+.+..+.. +..+...+ ...+..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 699999999999998875432 33322211 13455689999999999999999999988 348999999999
Q ss_pred chhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 606 TSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
.+.++|.....+..+|..+ .++||||||+|.++..+..... ...+++.|+..++.. ..++++|++||...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~---~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDY---GQEAIEILLQVMENN----RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CC---THHHHHHHHHHHHHC----TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccc---cHHHHHHHHHHHhcC----CCCEEEEEeCChHH
Confidence 9999999888888888877 4689999999999755432111 133445555555542 35678888887653
Q ss_pred -----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHH-------cCCCcHHHHHHHHHHHHH
Q 003253 686 -----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANM-------TDGYSGSDLKNLCVTAAH 752 (836)
Q Consensus 686 -----~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~-------t~G~sg~DL~~L~~~A~~ 752 (836)
.+++++++||+..+.|+.|+.+++.+|++.++...+.. .+..+..++.. ....+++++.++++.|..
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 24689999999999999999999999999999887654 34445666665 334568999999999998
Q ss_pred HHHHHHHH
Q 003253 753 RPIKEILE 760 (836)
Q Consensus 753 ~air~~~~ 760 (836)
.+..+++.
T Consensus 261 ~~~~r~~~ 268 (309)
T 3syl_A 261 RQANRLFT 268 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777654
No 48
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.78 E-value=5.1e-21 Score=219.47 Aligned_cols=203 Identities=21% Similarity=0.242 Sum_probs=138.1
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CCcceeecccc
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSI 605 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~--~~~i~v~~s~l 605 (836)
.+...|++++|++++++.+..++.. +.. + ..|++++||+||||||||++|+++|++++ .+|+.++++++
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~-------~~~-~-~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL-------IKS-K-KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-------HHT-T-CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH-------HHh-C-CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 3456799999999999998887753 111 2 24568999999999999999999999998 99999999999
Q ss_pred chhcccccHHHHHHHHHHH---HhcCCceEEEccchhhhcCCCCCchHH---HHH---------------HHHHHHHHHh
Q 003253 606 TSKWFGEGEKYVKAVFSLA---SKIAPSVIFVDEVDSMLGRRENPGEHE---AMR---------------KMKNEFMVNW 664 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A---~~~~psIL~IDEID~L~~~r~~~~~~~---~~~---------------~il~~ll~~l 664 (836)
.+.+.|+.+. ++.+|..| +...|+||||||||.+++.+....... ... ++...++..+
T Consensus 102 ~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l 180 (456)
T 2c9o_A 102 YSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL 180 (456)
T ss_dssp CCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHH
T ss_pred HHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHH
Confidence 9999999987 99999999 788899999999999998775431111 001 1112244444
Q ss_pred cCCcccCcccEEEEeccCCCCCCcHHHHh--hccc--cccCCCCC--HHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCC
Q 003253 665 DGLRTKDTERILVLAATNRPFDLDEAVIR--RLPR--RLMVNLPD--APNRAKILQVILAKEDLSPDVDFDAIANMTDGY 738 (836)
Q Consensus 665 d~~~~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~--~I~v~~P~--~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~ 738 (836)
+......+..++|++|||.++.++++++| ||+. .+.++.|+ .++|.+|++.+.. .+++.++..++|
T Consensus 181 ~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g- 252 (456)
T 2c9o_A 181 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG- 252 (456)
T ss_dssp HHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC------
T ss_pred hhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC-
Confidence 32222233556777999999999999876 9988 55667774 4778887765442 368899999999
Q ss_pred cHHHHHHHHHH
Q 003253 739 SGSDLKNLCVT 749 (836)
Q Consensus 739 sg~DL~~L~~~ 749 (836)
|+||.++|..
T Consensus 253 -gadl~~l~~~ 262 (456)
T 2c9o_A 253 -GQDILSMMGQ 262 (456)
T ss_dssp -----------
T ss_pred -hhHHHHHHhh
Confidence 9999999954
No 49
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.77 E-value=7.7e-19 Score=201.34 Aligned_cols=127 Identities=13% Similarity=0.181 Sum_probs=90.2
Q ss_pred ceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEec---------cC---CCCCCcHHHHhhccc
Q 003253 630 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA---------TN---RPFDLDEAVIRRLPR 697 (836)
Q Consensus 630 sIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaT---------Tn---~~~~Ld~~l~rRf~~ 697 (836)
.|+||||++.| + ....+.|+..+... ..+++|++| ++ .+..+++.+++||..
T Consensus 297 ~VliIDEa~~l-----~-------~~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~ 360 (456)
T 2c9o_A 297 GVLFVDEVHML-----D-------IECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI 360 (456)
T ss_dssp CEEEEESGGGC-----B-------HHHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEE
T ss_pred eEEEEechhhc-----C-------HHHHHHHHHHhhcc----CCCEEEEecCCccccccccccccccccCChhHHhhcce
Confidence 69999999998 2 23445555555432 234655566 33 277899999999965
Q ss_pred cccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 003253 698 RLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMT-DGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKP 775 (836)
Q Consensus 698 ~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t-~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~ 775 (836)
+.|++|+.++..++++..+...+.. ++..+..++..+ .| +++....+++.|...|..+
T Consensus 361 -~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~------------------ 420 (456)
T 2c9o_A 361 -IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKIN------------------ 420 (456)
T ss_dssp -EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHT------------------
T ss_pred -eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhc------------------
Confidence 6999999999999999988765543 444567777777 55 6777777777776554321
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHh
Q 003253 776 APALSGCADIRPLNMDDFKYAHERV 800 (836)
Q Consensus 776 ~~~~~~~~~~~~lt~eDf~~Al~~v 800 (836)
....|+.+|+..|+..+
T Consensus 421 --------~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 421 --------GKDSIEKEHVEEISELF 437 (456)
T ss_dssp --------TCSSBCHHHHHHHHHHS
T ss_pred --------CCCccCHHHHHHHHHHh
Confidence 22569999999998875
No 50
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=5.5e-18 Score=178.94 Aligned_cols=212 Identities=17% Similarity=0.300 Sum_probs=148.9
Q ss_pred CCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEE
Q 003253 17 LDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLL 96 (836)
Q Consensus 17 ~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll 96 (836)
++.+...++|+++.++ ++.|..|.+.+-. +++++.. ..-=...++.|||+||+|| ++++||||||++.+++++
T Consensus 2 ~~~~~~~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~--~~~~~~~~~~vll~G~~Gt--GKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGC--DEAKEEVAELVEY-LREPSRF--QKLGGKIPKGVLMVGPPGT--GKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp EEECSSCCCGGGSCSC--HHHHHHTHHHHHH-HHCGGGC-------CCCCEEEEECCTTS--CHHHHHHHHHHHHTCCEE
T ss_pred CCccCCCCCHHHhcCc--HHHHHHHHHHHHH-HhCHHHH--HHcCCCCCCeEEEECcCCC--CHHHHHHHHHHHcCCCEE
Confidence 3456678999999999 9999999887654 6665542 1111244677999999999 999999999999999988
Q ss_pred EEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc
Q 003253 97 IFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSA 176 (836)
Q Consensus 97 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (836)
.++.+.+..
T Consensus 75 ~i~~~~~~~----------------------------------------------------------------------- 83 (257)
T 1lv7_A 75 TISGSDFVE----------------------------------------------------------------------- 83 (257)
T ss_dssp EECSCSSTT-----------------------------------------------------------------------
T ss_pred EEeHHHHHH-----------------------------------------------------------------------
Confidence 887544433
Q ss_pred ccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccc
Q 003253 177 GTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFC 256 (836)
Q Consensus 177 ~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~ 256 (836)
.|+|.
T Consensus 84 --------------~~~~~------------------------------------------------------------- 88 (257)
T 1lv7_A 84 --------------MFVGV------------------------------------------------------------- 88 (257)
T ss_dssp --------------SCCCC-------------------------------------------------------------
T ss_pred --------------Hhhhh-------------------------------------------------------------
Confidence 11111
Q ss_pred ccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCc-----------chhhHHHHHHhcC--CCc
Q 003253 257 NVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNS-----------DSYSTFKSRLEKL--PDK 323 (836)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~-----------~~~~~l~~~l~~l--~g~ 323 (836)
....+..+|+.+.. ..|+||||||||.+..... +..+.+...|+.. +.+
T Consensus 89 ---------------~~~~~~~~~~~a~~---~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 89 ---------------GASRVRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp ---------------CHHHHHHHHHHHHT---TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred ---------------hHHHHHHHHHHHHH---cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 13346677887776 7899999999998654221 2333444445543 358
Q ss_pred EEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHH
Q 003253 324 VIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLA 403 (836)
Q Consensus 324 v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~ 403 (836)
++||++||+++ .+|+|+.||+| |...+.|++|+.++|.+
T Consensus 151 ~~vI~~tn~~~----------------------~l~~~l~r~~r-------------------f~~~i~i~~P~~~~r~~ 189 (257)
T 1lv7_A 151 IIVIAATNRPD----------------------VLDPALLRPGR-------------------FDRQVVVGLPDVRGREQ 189 (257)
T ss_dssp EEEEEEESCTT----------------------TSCGGGGSTTS-------------------SCEEEECCCCCHHHHHH
T ss_pred EEEEEeeCCch----------------------hCCHHHcCCCc-------------------CCeEEEeCCCCHHHHHH
Confidence 99999999987 58888999988 98999999999999999
Q ss_pred HHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhh
Q 003253 404 SWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCI 444 (836)
Q Consensus 404 Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~ 444 (836)
||+.++.+ ..+..+.+....+..+.|++++||..+|.
T Consensus 190 il~~~~~~----~~l~~~~~~~~la~~~~G~~~~dl~~l~~ 226 (257)
T 1lv7_A 190 ILKVHMRR----VPLAPDIDAAIIARGTPGFSGADLANLVN 226 (257)
T ss_dssp HHHHHHTT----SCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHhc----CCCCccccHHHHHHHcCCCCHHHHHHHHH
Confidence 99977632 33444444434444555555555554444
No 51
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.76 E-value=9.1e-18 Score=186.12 Aligned_cols=219 Identities=19% Similarity=0.221 Sum_probs=156.0
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--Ccceeeccccch
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITS 607 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~--~~i~v~~s~l~s 607 (836)
..+|++++|.+.+++.+..++.. +..+ ..+++++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~-------~~~~--~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEM-------IREG--KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH-------HHTT--CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcchhhccChHHHHHHHHHHHHH-------HHcC--CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 45699999999999887665532 1111 234579999999999999999999999974 787887765433
Q ss_pred hcc-------------------------------------------------cccHHHHHHHHHHHHhc---------CC
Q 003253 608 KWF-------------------------------------------------GEGEKYVKAVFSLASKI---------AP 629 (836)
Q Consensus 608 ~~~-------------------------------------------------g~~e~~i~~lf~~A~~~---------~p 629 (836)
.+. |.....++..+..+... .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 222 22233445555444321 26
Q ss_pred ceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEecc-----------CCCCCCcHHHHhhcccc
Q 003253 630 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-----------NRPFDLDEAVIRRLPRR 698 (836)
Q Consensus 630 sIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTT-----------n~~~~Ld~~l~rRf~~~ 698 (836)
+||||||+|.+. ....+.++..++.. ..+++++++. |.+..+++++++||..
T Consensus 191 ~vl~IDEi~~l~------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~- 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI- 253 (368)
T ss_dssp CEEEEESGGGSB------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-
T ss_pred ceEEEhhccccC------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-
Confidence 899999999882 12334444444332 2345555554 3577899999999955
Q ss_pred ccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 003253 699 LMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAP 777 (836)
Q Consensus 699 I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~ 777 (836)
+.|++|+.+++.+|++..+...+.. ++..++.++..+.+.+++++.++|+.|...+..+
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~-------------------- 313 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR-------------------- 313 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT--------------------
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--------------------
Confidence 8999999999999999998876654 4556788899988678999999999998876442
Q ss_pred CCCCCCCCccccHHHHHHHHHHh
Q 003253 778 ALSGCADIRPLNMDDFKYAHERV 800 (836)
Q Consensus 778 ~~~~~~~~~~lt~eDf~~Al~~v 800 (836)
....|+.+|+.+|+..+
T Consensus 314 ------~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 314 ------KGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp ------TCSSBCHHHHHHHHHHS
T ss_pred ------CCCCCCHHHHHHHHHHh
Confidence 23579999999999874
No 52
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.76 E-value=4.2e-18 Score=183.64 Aligned_cols=247 Identities=21% Similarity=0.278 Sum_probs=163.6
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch-hccccc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 613 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s-~~~g~~ 613 (836)
+++|++.+++.+...+..+..+...........++.++||+||||||||++|+++|+.++.+++.++++.+.. .+.|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 4789999999998887653322221110001134578999999999999999999999999999999998765 455543
Q ss_pred -HHHHHHHHHHH-----HhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcc------cCcccEEEEec-
Q 003253 614 -EKYVKAVFSLA-----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAA- 680 (836)
Q Consensus 614 -e~~i~~lf~~A-----~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~------~~~~~vlVIaT- 680 (836)
...++.++..+ ....++||||||+|.+...............+.+.|+..+++... ....++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 34566666532 112468999999999976553322222223345566666665321 12246788888
Q ss_pred ---cCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHH----H-------HhhCCCC---CcccHHHHHHHcC-------
Q 003253 681 ---TNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV----I-------LAKEDLS---PDVDFDAIANMTD------- 736 (836)
Q Consensus 681 ---Tn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~----~-------l~~~~l~---~d~dl~~LA~~t~------- 736 (836)
++.+..+++++++||+..+.|+.|+.+++.+|++. + +...+.. ++..++.|+..+.
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 255 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 255 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc
Confidence 45778899999999998899999999999999983 2 2222321 3444666776652
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 003253 737 GYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 801 (836)
Q Consensus 737 G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~ 801 (836)
+.+.+.+.++++.+...+..+. .. .......|+.+|+++|+....
T Consensus 256 ~g~~R~l~~~l~~~~~~~~~~~------------~~--------~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 256 NIGARRLHTVMERLMDKISFSA------------SD--------MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CCTTHHHHHHHHHHSHHHHHHG------------GG--------CTTCEEEECHHHHHHHTCSSS
T ss_pred ccCcHHHHHHHHHHHHhhhcCC------------cc--------ccCCEEEEeeHHHHHHHHhhh
Confidence 4577888888887765433211 00 011123599999999988653
No 53
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=7.4e-18 Score=180.30 Aligned_cols=233 Identities=18% Similarity=0.272 Sum_probs=165.2
Q ss_pred cccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 21 NLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 21 ~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
.-+++|++++++ +..+..|.+.+..++++++..+.. . ...++.|||+||||| ++++||||+|++++.+++.++.
T Consensus 11 ~~~~~~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~~~~ll~G~~Gt--GKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 11 RPNVRYEDIGGL--EKQMQEIREVVELPLKHPELFEKV-G-IEPPKGILLYGPPGT--GKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHH-C-CCCCSEEEEESSSSS--SHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhc-C-CCCCCeEEEECCCCC--cHHHHHHHHHHHhCCCEEEEeh
Confidence 446899999999 999999999999999998875321 1 245778999999999 9999999999999999999886
Q ss_pred cccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccccc
Q 003253 101 HSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSK 180 (836)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (836)
+.+.+
T Consensus 85 ~~~~~--------------------------------------------------------------------------- 89 (285)
T 3h4m_A 85 SELVK--------------------------------------------------------------------------- 89 (285)
T ss_dssp GGGCC---------------------------------------------------------------------------
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 55544
Q ss_pred ccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccccccccc
Q 003253 181 NHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTD 260 (836)
Q Consensus 181 ~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~ 260 (836)
+|+|.
T Consensus 90 ----------~~~~~----------------------------------------------------------------- 94 (285)
T 3h4m_A 90 ----------KFIGE----------------------------------------------------------------- 94 (285)
T ss_dssp ----------CSTTH-----------------------------------------------------------------
T ss_pred ----------hccch-----------------------------------------------------------------
Confidence 11111
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhcc--------CcchhhHHHHHH---hc--CCCcEEEE
Q 003253 261 LRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSDSYSTFKSRL---EK--LPDKVIVI 327 (836)
Q Consensus 261 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~--------~~~~~~~l~~~l---~~--l~g~v~vI 327 (836)
....+..+|+.+.. ..|.||||||+|.+... ..+....+...| +. ..++++||
T Consensus 95 -----------~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 160 (285)
T 3h4m_A 95 -----------GASLVKDIFKLAKE---KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKII 160 (285)
T ss_dssp -----------HHHHHHHHHHHHHH---TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEE
T ss_pred -----------HHHHHHHHHHHHHH---cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 35667788888888 89999999999997642 222223333333 32 24589999
Q ss_pred eeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHH
Q 003253 328 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 407 (836)
Q Consensus 328 gs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~ 407 (836)
|++|.++ .+|++++|++| |...+.|++|+.++|.+||+.
T Consensus 161 ~ttn~~~----------------------~l~~~l~~~~R-------------------f~~~i~~~~p~~~~r~~il~~ 199 (285)
T 3h4m_A 161 GATNRPD----------------------ILDPAILRPGR-------------------FDRIIEVPAPDEKGRLEILKI 199 (285)
T ss_dssp EECSCGG----------------------GBCHHHHSTTS-------------------EEEEEECCCCCHHHHHHHHHH
T ss_pred EeCCCch----------------------hcCHHHcCCCc-------------------CCeEEEECCCCHHHHHHHHHH
Confidence 9999886 47777777777 988999999999999999996
Q ss_pred hhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccccchHHHHHHHHHHHHHHhhcCCCCCCCcccccccchhhh
Q 003253 408 QLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQSLTNESAEKIVGWALSHHLMQNPEADPDARLVLSCESIQY 487 (836)
Q Consensus 408 ~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~~s~~~ie~IV~~A~s~~l~~~~d~~~~~~~~i~~~~~~~ 487 (836)
.+. ...+..+. ++..++.....+++.+|+.++..|...++.+.. ..++.+++..
T Consensus 200 ~~~----~~~~~~~~---------------~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~-------~~I~~~d~~~ 253 (285)
T 3h4m_A 200 HTR----KMNLAEDV---------------NLEEIAKMTEGCVGAELKAICTEAGMNAIRELR-------DYVTMDDFRK 253 (285)
T ss_dssp HHT----TSCBCTTC---------------CHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC-------SSBCHHHHHH
T ss_pred HHh----cCCCCCcC---------------CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-------CcCCHHHHHH
Confidence 653 22333333 344444444455555566666666666655432 2355555555
Q ss_pred hhh
Q 003253 488 GIG 490 (836)
Q Consensus 488 ~~~ 490 (836)
++.
T Consensus 254 al~ 256 (285)
T 3h4m_A 254 AVE 256 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 54
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.75 E-value=1.8e-17 Score=174.58 Aligned_cols=209 Identities=18% Similarity=0.245 Sum_probs=140.8
Q ss_pred cccccccccccchhHHHHHHHHHHhccCCcccc-cccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 23 QESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 23 ~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~-~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
+++|+++.++ ++.|..|.+.+.. +++++.. .++ ...++.|||+||||| ++++||||+|++.+.+++.++.+
T Consensus 2 ~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~~~~g---~~~~~~vll~G~~Gt--GKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 2 GVSFKDVAGM--HEAKLEVREFVDY-LKSPERFLQLG---AKVPKGALLLGPPGC--GKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCCTTSSCSC--HHHHHHHHHHHHH-HHCCC---------CCCCCEEEEESCTTS--SHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHHcC---CCCCceEEEECCCCC--CHHHHHHHHHHHhCCCEEEechH
Confidence 5899999999 9999999887765 5665542 332 245788999999999 99999999999999999988865
Q ss_pred ccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 003253 102 SLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLTSAGTSKN 181 (836)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (836)
.+..
T Consensus 74 ~~~~---------------------------------------------------------------------------- 77 (262)
T 2qz4_A 74 EFVE---------------------------------------------------------------------------- 77 (262)
T ss_dssp TTSS----------------------------------------------------------------------------
T ss_pred HHHh----------------------------------------------------------------------------
Confidence 5433
Q ss_pred cccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccccc
Q 003253 182 HMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVTDL 261 (836)
Q Consensus 182 ~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~~~ 261 (836)
.|.
T Consensus 78 ---------~~~-------------------------------------------------------------------- 80 (262)
T 2qz4_A 78 ---------VIG-------------------------------------------------------------------- 80 (262)
T ss_dssp ---------SST--------------------------------------------------------------------
T ss_pred ---------hcc--------------------------------------------------------------------
Confidence 000
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC------------cchhhHHHHHHhcC--CCcEEEE
Q 003253 262 RLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN------------SDSYSTFKSRLEKL--PDKVIVI 327 (836)
Q Consensus 262 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~------------~~~~~~l~~~l~~l--~g~v~vI 327 (836)
++ ....+..+|+.+.. ..|+||||||+|.+...+ ....+.+...++.. ..+++||
T Consensus 81 ------~~--~~~~~~~~~~~a~~---~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi 149 (262)
T 2qz4_A 81 ------GL--GAARVRSLFKEARA---RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVL 149 (262)
T ss_dssp ------TH--HHHHHHHHHHHHHH---TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEE
T ss_pred ------Ch--hHHHHHHHHHHHHh---cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 01 23456778888887 789999999999965421 22233344444443 3589999
Q ss_pred eeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHH
Q 003253 328 GSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKH 407 (836)
Q Consensus 328 gs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~ 407 (836)
|++|.++ .+|++++||+| |...++|++|+.++|.+||+.
T Consensus 150 ~~tn~~~----------------------~ld~~l~~~~R-------------------~~~~i~i~~p~~~~r~~il~~ 188 (262)
T 2qz4_A 150 ASTNRAD----------------------ILDGALMRPGR-------------------LDRHVFIDLPTLQERREIFEQ 188 (262)
T ss_dssp EEESCGG----------------------GGGSGGGSTTS-------------------CCEEEECCSCCHHHHHHHHHH
T ss_pred ecCCChh----------------------hcCHHHhcCCc-------------------CCeEEEeCCcCHHHHHHHHHH
Confidence 9999886 57888888888 999999999999999999997
Q ss_pred hhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhc
Q 003253 408 QLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRD 446 (836)
Q Consensus 408 ~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~ 446 (836)
++.+. ......+......+..+.|++++||..+|..+
T Consensus 189 ~~~~~--~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a 225 (262)
T 2qz4_A 189 HLKSL--KLTQSSTFYSQRLAELTPGFSGADIANICNEA 225 (262)
T ss_dssp HHHHT--TCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHhC--CCCcchhhHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 77442 11111111112334444555555555554433
No 55
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.74 E-value=4.2e-17 Score=178.87 Aligned_cols=194 Identities=21% Similarity=0.241 Sum_probs=142.8
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 610 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~ 610 (836)
.+|++++|.+.+++.+...+..... . ..+..++||+||||||||++|+++|+.++.+|+.+++..+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK-------R--NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH-------T--TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh-------c--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 3799999999999999988864211 0 23456899999999999999999999999999999987653
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcc--------------cCcccEE
Q 003253 611 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT--------------KDTERIL 676 (836)
Q Consensus 611 g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~--------------~~~~~vl 676 (836)
....+..++.. ...+++||||||+.+ ....+. .++..++.... ....+++
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l-----~~~~~~-------~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRL-----SPAIEE-------VLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGC-----CHHHHH-------HHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhc-----CHHHHH-------HHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 22233333332 246799999999988 222222 22222222110 0112589
Q ss_pred EEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 003253 677 VLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 677 VIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~a 754 (836)
+|++||....+++++++||+..+.++.|+.+++..+++..+...+.. .+..+..++..+.| +++++.++++.+...+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877654 44556778885555 6678888888776543
No 56
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=7.3e-17 Score=173.74 Aligned_cols=222 Identities=18% Similarity=0.295 Sum_probs=160.4
Q ss_pred HHHHHcccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHH
Q 003253 9 REDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALA 88 (836)
Q Consensus 9 ~~~~~~~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala 88 (836)
.+.+.+.+++ +.-.++|+++.++ +..+..|.+++..++.++++.. .+...++.|||+||||| ++++||||+|
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vll~Gp~Gt--GKT~la~~la 75 (297)
T 3b9p_A 4 VQLILDEIVE-GGAKVEWTDIAGQ--DVAKQALQEMVILPSVRPELFT---GLRAPAKGLLLFGPPGN--GKTLLARAVA 75 (297)
T ss_dssp HHHHHTTTBC-CSSCCCGGGSCCC--HHHHHHHHHHTHHHHHCGGGSC---GGGCCCSEEEEESSSSS--CHHHHHHHHH
T ss_pred HHHHHHHhcc-CCCCCCHHHhCCh--HHHHHHHHHHHHhhhhCHHHHh---cCCCCCCeEEEECcCCC--CHHHHHHHHH
Confidence 3445555554 3568999999998 9999999999999999988742 35567889999999999 9999999999
Q ss_pred hHhCCeEEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 003253 89 HYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKME 168 (836)
Q Consensus 89 ~~~~~~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (836)
++++.+++.++.+.+.+
T Consensus 76 ~~~~~~~~~i~~~~l~~--------------------------------------------------------------- 92 (297)
T 3b9p_A 76 TECSATFLNISAASLTS--------------------------------------------------------------- 92 (297)
T ss_dssp HHTTCEEEEEESTTTSS---------------------------------------------------------------
T ss_pred HHhCCCeEEeeHHHHhh---------------------------------------------------------------
Confidence 99999998887654443
Q ss_pred ccccccccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCC
Q 003253 169 TDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQC 248 (836)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~ 248 (836)
+|+|.
T Consensus 93 ----------------------~~~~~----------------------------------------------------- 97 (297)
T 3b9p_A 93 ----------------------KYVGD----------------------------------------------------- 97 (297)
T ss_dssp ----------------------SSCSC-----------------------------------------------------
T ss_pred ----------------------cccch-----------------------------------------------------
Confidence 11111
Q ss_pred CCCcccccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC--------cchhhHHHHHHhcC
Q 003253 249 EGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SDSYSTFKSRLEKL 320 (836)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~--------~~~~~~l~~~l~~l 320 (836)
....++.+|..+.. .+|.||||||+|.++... ....+.+...++..
T Consensus 98 -----------------------~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 151 (297)
T 3b9p_A 98 -----------------------GEKLVRALFAVARH---MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGL 151 (297)
T ss_dssp -----------------------HHHHHHHHHHHHHH---TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHC
T ss_pred -----------------------HHHHHHHHHHHHHH---cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcc
Confidence 35567778888887 899999999999976532 22333444555554
Q ss_pred C-----CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecC
Q 003253 321 P-----DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHM 395 (836)
Q Consensus 321 ~-----g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~l 395 (836)
+ ++|+|||+||+++ .++.++.+||...+.+++
T Consensus 152 ~~~~~~~~v~vi~~tn~~~-------------------------------------------~l~~~l~~R~~~~i~~~~ 188 (297)
T 3b9p_A 152 PGNPDGDRIVVLAATNRPQ-------------------------------------------ELDEAALRRFTKRVYVSL 188 (297)
T ss_dssp C------CEEEEEEESCGG-------------------------------------------GBCHHHHHHCCEEEECCC
T ss_pred cccCCCCcEEEEeecCChh-------------------------------------------hCCHHHHhhCCeEEEeCC
Confidence 3 4699999999885 335567778999999999
Q ss_pred CChHHHHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 396 PQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 396 P~~e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
|+.++|..||+..+.+. ...+. +......+..+.|+++.||..||..+..
T Consensus 189 p~~~~r~~il~~~~~~~--~~~~~-~~~~~~la~~~~g~~~~~l~~l~~~a~~ 238 (297)
T 3b9p_A 189 PDEQTRELLLNRLLQKQ--GSPLD-TEALRRLAKITDGYSGSDLTALAKDAAL 238 (297)
T ss_dssp CCHHHHHHHHHHHHGGG--SCCSC-HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhc--CCCCC-HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999776432 11111 1122233445567777777666655544
No 57
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.73 E-value=5.5e-17 Score=180.14 Aligned_cols=222 Identities=18% Similarity=0.291 Sum_probs=162.1
Q ss_pred HHHHHcccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHH
Q 003253 9 REDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALA 88 (836)
Q Consensus 9 ~~~~~~~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala 88 (836)
.+.+.+.+++. .-.++|+++-+. +..+..|.+.+..+++++++.. .+...++.|||+||||| ++++||||+|
T Consensus 67 ~~~i~~~i~~~-~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~~vLl~GppGt--GKT~la~aia 138 (357)
T 3d8b_A 67 IELIMNEIMDH-GPPVNWEDIAGV--EFAKATIKEIVVWPMLRPDIFT---GLRGPPKGILLFGPPGT--GKTLIGKCIA 138 (357)
T ss_dssp HHHHHHHTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGSCCSEEEEESSTTS--SHHHHHHHHH
T ss_pred HHHHHhhcccC-CCCCCHHHhCCh--HHHHHHHHHHHHHHhhChHhHh---hccCCCceEEEECCCCC--CHHHHHHHHH
Confidence 34445555543 457999999988 9999999999999999988743 34567889999999999 9999999999
Q ss_pred hHhCCeEEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 003253 89 HYFGAKLLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKME 168 (836)
Q Consensus 89 ~~~~~~ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (836)
++++.+++.++.+.+.+
T Consensus 139 ~~~~~~~~~i~~~~l~~--------------------------------------------------------------- 155 (357)
T 3d8b_A 139 SQSGATFFSISASSLTS--------------------------------------------------------------- 155 (357)
T ss_dssp HHTTCEEEEEEGGGGCC---------------------------------------------------------------
T ss_pred HHcCCeEEEEehHHhhc---------------------------------------------------------------
Confidence 99999999888755544
Q ss_pred ccccccccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCC
Q 003253 169 TDTTLTSAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQC 248 (836)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~ 248 (836)
+|+|.
T Consensus 156 ----------------------~~~g~----------------------------------------------------- 160 (357)
T 3d8b_A 156 ----------------------KWVGE----------------------------------------------------- 160 (357)
T ss_dssp ----------------------SSTTH-----------------------------------------------------
T ss_pred ----------------------cccch-----------------------------------------------------
Confidence 11111
Q ss_pred CCCcccccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC----c----chhhHHHHHHhcC
Q 003253 249 EGGHGFFCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN----S----DSYSTFKSRLEKL 320 (836)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~----~----~~~~~l~~~l~~l 320 (836)
....++.+|+.+.. .+|.||||||||.+.... . +..+.+...|+.+
T Consensus 161 -----------------------~~~~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~ 214 (357)
T 3d8b_A 161 -----------------------GEKMVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGA 214 (357)
T ss_dssp -----------------------HHHHHHHHHHHHHH---TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-
T ss_pred -----------------------HHHHHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcc
Confidence 35667888888887 889999999999976532 1 2233444445433
Q ss_pred ----CCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCC
Q 003253 321 ----PDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMP 396 (836)
Q Consensus 321 ----~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP 396 (836)
..+|+|||+||+++ .++.++.+||...+.|++|
T Consensus 215 ~~~~~~~v~vI~atn~~~-------------------------------------------~l~~~l~~Rf~~~i~i~~p 251 (357)
T 3d8b_A 215 TTSSEDRILVVGATNRPQ-------------------------------------------EIDEAARRRLVKRLYIPLP 251 (357)
T ss_dssp ---CCCCEEEEEEESCGG-------------------------------------------GBCHHHHTTCCEEEECCCC
T ss_pred cccCCCCEEEEEecCChh-------------------------------------------hCCHHHHhhCceEEEeCCc
Confidence 36899999999875 3355677889999999999
Q ss_pred ChHHHHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 397 QDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 397 ~~e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
+.++|..||+..+... ...+. +......+..+.|++++||..||..+..
T Consensus 252 ~~~~r~~il~~~~~~~--~~~l~-~~~l~~la~~t~G~s~~dl~~l~~~a~~ 300 (357)
T 3d8b_A 252 EASARKQIVINLMSKE--QCCLS-EEEIEQIVQQSDAFSGADMTQLCREASL 300 (357)
T ss_dssp CHHHHHHHHHHHHHTS--CBCCC-HHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhc--CCCcc-HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999776431 11111 1223334556677777777777776654
No 58
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.73 E-value=1.5e-17 Score=191.47 Aligned_cols=211 Identities=18% Similarity=0.271 Sum_probs=149.8
Q ss_pred cCCCccccccccccccccchhHHHHHHHHHHhccCCcccc-cccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCe
Q 003253 16 ILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHA-KYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK 94 (836)
Q Consensus 16 v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~-~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ 94 (836)
++... ..++|+++.++ ++.|..|.+.+.. ++++... ..+ ...+++|||+||||| ++++||||+|++.+++
T Consensus 21 ~~~~~-~~~~f~dv~G~--~~~k~~l~~lv~~-l~~~~~~~~lg---~~ip~GvLL~GppGt--GKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 21 VLTEA-PKVTFKDVAGA--EEAKEELKEIVEF-LKNPSRFHEMG---ARIPKGVLLVGPPGV--GKTHLARAVAGEARVP 91 (499)
T ss_dssp EECSC-CCCCTTSSCSC--HHHHHHHHHHHHH-HHCGGGTTTTS---CCCCSEEEEECSSSS--SHHHHHHHHHHHTTCC
T ss_pred eeccC-CCCCHHHcCCc--HHHHHHHHHHHHH-hhchhhhhhcc---CCCCceEEEECCCCC--CHHHHHHHHHHHhCCC
Confidence 34444 78999999999 9999999988765 5555432 221 234667999999999 9999999999999999
Q ss_pred EEEEeccccCCCCChhhHhhhhcCCcccccccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 003253 95 LLIFDSHSLLGGLSSKEAELLKDGTSAEKSCGCVKQGPTSTDLAKSINLPVSESDTPSSSNPPPQGPESQPKMETDTTLT 174 (836)
Q Consensus 95 ll~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (836)
++.++.++|..
T Consensus 92 ~i~i~g~~~~~--------------------------------------------------------------------- 102 (499)
T 2dhr_A 92 FITASGSDFVE--------------------------------------------------------------------- 102 (499)
T ss_dssp EEEEEGGGGTS---------------------------------------------------------------------
T ss_pred EEEEehhHHHH---------------------------------------------------------------------
Confidence 99888655433
Q ss_pred ccccccccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCccc
Q 003253 175 SAGTSKNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGF 254 (836)
Q Consensus 175 ~~~~~~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~ 254 (836)
.|+|.
T Consensus 103 ----------------~~~g~----------------------------------------------------------- 107 (499)
T 2dhr_A 103 ----------------MFVGV----------------------------------------------------------- 107 (499)
T ss_dssp ----------------SCTTH-----------------------------------------------------------
T ss_pred ----------------hhhhh-----------------------------------------------------------
Confidence 11111
Q ss_pred ccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCeEEEEcCchhhhcc--------Ccc---hhhHHHHHHhcC--C
Q 003253 255 FCNVTDLRLENSGTEDLDKLLINTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSD---SYSTFKSRLEKL--P 321 (836)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~--------~~~---~~~~l~~~l~~l--~ 321 (836)
....+..+|+.+.. ..|+||||||||.+... +.+ ..+.+...|+.. .
T Consensus 108 -----------------~~~~v~~lfq~a~~---~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 108 -----------------GAARVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp -----------------HHHHHHHHTTTSSS---SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred -----------------HHHHHHHHHHHHHh---cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 23345666666655 78999999999985432 112 223343444432 2
Q ss_pred CcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHH
Q 003253 322 DKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEAL 401 (836)
Q Consensus 322 g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~r 401 (836)
..++||++||+++ ++|+|++|||| |...|.|++|+.++|
T Consensus 168 ~~viviAatn~p~----------------------~LD~aLlr~gR-------------------fdr~i~i~~Pd~~~R 206 (499)
T 2dhr_A 168 TAIVVMAATNRPD----------------------ILDPALLRPGR-------------------FDRQIAIDAPDVKGR 206 (499)
T ss_dssp CCCEEEECCSCGG----------------------GSCTTTSSTTS-------------------SCCEEECCCCCHHHH
T ss_pred ccEEEEEecCChh----------------------hcCcccccccc-------------------cceEEecCCCCHHHH
Confidence 4689999999986 69999999999 999999999999999
Q ss_pred HHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhh
Q 003253 402 LASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCI 444 (836)
Q Consensus 402 l~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~ 444 (836)
.+||+.++ +...+..+++....+..+.|++|+||..+|.
T Consensus 207 ~~IL~~~~----~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~ 245 (499)
T 2dhr_A 207 EQILRIHA----RGKPLAEDVDLALLAKRTPGFVGADLENLLN 245 (499)
T ss_dssp HHHHHHTT----SSSCCCCSSTTHHHHTTSCSCCHHHHHHHHH
T ss_pred HHHHHHHH----hcCCCChHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999776 3344555555555555556655555554444
No 59
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.72 E-value=1.5e-17 Score=177.16 Aligned_cols=177 Identities=23% Similarity=0.289 Sum_probs=126.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhccccc----HHHHHHHHHHHHhcCCceEEEccchhhhc
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEG----EKYVKAVFSLASKIAPSVIFVDEVDSMLG 642 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~----e~~i~~lf~~A~~~~psIL~IDEID~L~~ 642 (836)
.++.++||+||||||||++|+++|+.++.+|+.+++++ .+.|.. ...++.+|..+....++||||||||.+++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLD 138 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhc
Confidence 45579999999999999999999999999999998876 233333 35678889988888899999999999976
Q ss_pred CCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcH-HHHhhccccccCCCCCHHHHHHHHHHHHhhCC
Q 003253 643 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE-AVIRRLPRRLMVNLPDAPNRAKILQVILAKED 721 (836)
Q Consensus 643 ~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~-~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~ 721 (836)
.+.... .....+++.+...+++... ...+++||+|||.++.+++ .+.+||...+.++.++ +|.+|...+.....
T Consensus 139 ~~~~~~--~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~--~r~~i~~i~~~~~~ 213 (272)
T 1d2n_A 139 YVPIGP--RFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIA--TGEQLLEALELLGN 213 (272)
T ss_dssp CBTTTT--BCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEE--EHHHHHHHHHHHTC
T ss_pred cCCCCh--hHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhcccceEEcCCCcc--HHHHHHHHHHhcCC
Confidence 543211 1113444555555555432 3467899999999988887 6778998777775444 44445544443333
Q ss_pred CCCcccHHHHHHHcCCC----cHHHHHHHHHHHHH
Q 003253 722 LSPDVDFDAIANMTDGY----SGSDLKNLCVTAAH 752 (836)
Q Consensus 722 l~~d~dl~~LA~~t~G~----sg~DL~~L~~~A~~ 752 (836)
+ .+.++..++..+.|| +.+++.++++.|..
T Consensus 214 ~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 214 F-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp S-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred C-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 3 466788899999987 56666676666553
No 60
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.71 E-value=2.9e-17 Score=182.54 Aligned_cols=222 Identities=21% Similarity=0.304 Sum_probs=149.4
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhc-CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch-hccccc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCK-GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 613 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~-~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s-~~~g~~ 613 (836)
++|++.+++.+...+.....+...... .....++.++||+||||||||++|+++|+.++.+|+.++++++.. .|+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 689999999999888543322221111 122345679999999999999999999999999999999998764 377765
Q ss_pred -HHHHHHHHHHH----HhcCCceEEEccchhhhcCCCCCc--hHHHHHHHHHHHHHHhcCCc---------ccCcccEEE
Q 003253 614 -EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLR---------TKDTERILV 677 (836)
Q Consensus 614 -e~~i~~lf~~A----~~~~psIL~IDEID~L~~~r~~~~--~~~~~~~il~~ll~~ld~~~---------~~~~~~vlV 677 (836)
...+..+|..+ ....++||||||||.+...+.... .......+.+.|+..+++.. .....++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 55677777765 445679999999999976654322 11222346677777777421 111123344
Q ss_pred EeccCC--------C----------CC-----------------------------------CcHHHHhhccccccCCCC
Q 003253 678 LAATNR--------P----------FD-----------------------------------LDEAVIRRLPRRLMVNLP 704 (836)
Q Consensus 678 IaTTn~--------~----------~~-----------------------------------Ld~~l~rRf~~~I~v~~P 704 (836)
|+|||. . .. +.+++++||+.++.+.+|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 555554 1 11 789999999999999999
Q ss_pred CHHHHHHHHHH----HHhh-------CCCC---CcccHHHHHH--HcCCCcHHHHHHHHHHHHHHHHHH
Q 003253 705 DAPNRAKILQV----ILAK-------EDLS---PDVDFDAIAN--MTDGYSGSDLKNLCVTAAHRPIKE 757 (836)
Q Consensus 705 ~~~eR~~Il~~----~l~~-------~~l~---~d~dl~~LA~--~t~G~sg~DL~~L~~~A~~~air~ 757 (836)
+.+++.+|+.. ++.+ .+.. .+..++.|+. ....+..++|+++++.+...++.+
T Consensus 257 ~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 99999999886 3321 1222 2334566665 334566788999988888766543
No 61
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=179.73 Aligned_cols=84 Identities=24% Similarity=0.267 Sum_probs=69.5
Q ss_pred cccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCC
Q 003253 14 AGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 93 (836)
Q Consensus 14 ~~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~ 93 (836)
+.++.+ .-.++|+++.+. +..+..|.+.+..++.++++.. .+...++.|||+||||| ++++||+|+|++++.
T Consensus 103 ~~~~~~-~~~~~~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~vLL~GppGt--GKT~la~aia~~~~~ 174 (389)
T 3vfd_A 103 NEIVDN-GTAVKFDDIAGQ--DLAKQALQEIVILPSLRPELFT---GLRAPARGLLLFGPPGN--GKTMLAKAVAAESNA 174 (389)
T ss_dssp GTTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTTSC---GGGCCCSEEEEESSTTS--CHHHHHHHHHHHTTC
T ss_pred hhhhcc-CCCCChHHhCCH--HHHHHHHHHHHHHhccCHHHhc---ccCCCCceEEEECCCCC--CHHHHHHHHHHhhcC
Confidence 344443 457899999998 9999999999999999988743 34566889999999999 999999999999999
Q ss_pred eEEEEeccccCC
Q 003253 94 KLLIFDSHSLLG 105 (836)
Q Consensus 94 ~ll~~d~~~~~~ 105 (836)
+++.++.+.+.+
T Consensus 175 ~~~~v~~~~l~~ 186 (389)
T 3vfd_A 175 TFFNISAASLTS 186 (389)
T ss_dssp EEEEECSCCC--
T ss_pred cEEEeeHHHhhc
Confidence 999998766555
No 62
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.69 E-value=2e-17 Score=193.42 Aligned_cols=232 Identities=19% Similarity=0.248 Sum_probs=151.3
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch----
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS---- 607 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s---- 607 (836)
-+++++|++++++.+.+.+....... ..+...+||+||||||||++|+++|..++.+++.+++..+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~--------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTK--------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSS--------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcc--------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 34678999999999987765322111 124468999999999999999999999999999998876433
Q ss_pred -----hcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCccc-----------C
Q 003253 608 -----KWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----------D 671 (836)
Q Consensus 608 -----~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~-----------~ 671 (836)
.++|...+.+...|..+....| ||||||||.+..... ....+.++..++..... +
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~--------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~ 221 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR--------GDPSSAMLEVLDPEQNSSFSDHYIEETFD 221 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCB
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc--------cCHHHHHHHHHhhhhcceeecccCCeeec
Confidence 4566666667778887766555 999999999954321 11234455555432211 1
Q ss_pred cccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHh-----hCCCC------CcccHHHHHHHcC-CCc
Q 003253 672 TERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILA-----KEDLS------PDVDFDAIANMTD-GYS 739 (836)
Q Consensus 672 ~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~-----~~~l~------~d~dl~~LA~~t~-G~s 739 (836)
..+++||+|||.++.+++++++|| .+|.++.|+.+++.+|++.++. ..++. .+..+..++.... ...
T Consensus 222 ~~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~ 300 (543)
T 3m6a_A 222 LSKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAG 300 (543)
T ss_dssp CSSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSS
T ss_pred ccceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhc
Confidence 156899999999999999999999 5799999999999999988762 23332 2333455554333 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 003253 740 GSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 801 (836)
Q Consensus 740 g~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~ 801 (836)
.++|++.+..+...+..+++.. ......|+.+|+.+++....
T Consensus 301 vR~L~~~i~~~~~~aa~~~~~~--------------------~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 301 VRSLERQLAAICRKAAKAIVAE--------------------ERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTT--------------------CCSCCEECTTTTHHHHCSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHhc--------------------CCcceecCHHHHHHHhCCcc
Confidence 6777766666655444432210 11235689999999987543
No 63
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.69 E-value=4.2e-18 Score=180.72 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=61.3
Q ss_pred CCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEE
Q 003253 17 LDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLL 96 (836)
Q Consensus 17 ~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll 96 (836)
|+.+...++|+++.++ +..+..|.+.+-. +++++.. ..--...++.|||+||||| ++++||||||++.+.+++
T Consensus 1 i~~~~~~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~--~~~~~~~~~~vll~G~~Gt--GKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 1 INAEKPNVRFKDMAGN--EEAKEEVVEIVDF-LKYPERY--ANLGAKIPKGVLLVGPPGT--GKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp CCCCCCCCCSTTSSSC--TTTHHHHHHHHHH-HHCHHHH--HHHSCCCCSCCCCBCSSCS--SHHHHHHHHHHHHTCCCC
T ss_pred CCccCCCCCHHHhCCc--HHHHHHHHHHHHH-HHChHHH--HHCCCCCCceEEEECCCCC--cHHHHHHHHHHHhCCCEE
Confidence 4677888999999999 9999999887653 6766542 2111244667999999999 999999999999998876
Q ss_pred EEecccc
Q 003253 97 IFDSHSL 103 (836)
Q Consensus 97 ~~d~~~~ 103 (836)
.++.+.+
T Consensus 74 ~v~~~~~ 80 (268)
T 2r62_A 74 SMGGSSF 80 (268)
T ss_dssp CCCSCTT
T ss_pred EechHHH
Confidence 6654433
No 64
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.67 E-value=2.6e-16 Score=171.19 Aligned_cols=201 Identities=20% Similarity=0.241 Sum_probs=140.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 610 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~ 610 (836)
.+|++++|.+..++.+...+..... . ..++.++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKA-------R--KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHH-------H--CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHc-------c--CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 4789999999999999887753110 0 123468999999999999999999999999999998876532
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcc-------cCcccEEEEeccCC
Q 003253 611 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDTERILVLAATNR 683 (836)
Q Consensus 611 g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~-------~~~~~vlVIaTTn~ 683 (836)
...+...|..+ ...+++||||||+.+ ....+..+.++++.....+-+... ....++++|++||.
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l-----~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRL-----SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSC-----CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCccc-----ccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 12222222221 145789999999988 222222222222221000000000 01135789999999
Q ss_pred CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 684 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 684 ~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
+..+++++.+||+.++.++.|+.+++..+++.++...+.. ++..+..++..+.| +++++.++++.+...
T Consensus 148 ~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 148 PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDF 217 (324)
T ss_dssp CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTT
T ss_pred cccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 9999999999998899999999999999999998876554 34557888888866 567888888777544
No 65
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.66 E-value=2.7e-15 Score=171.10 Aligned_cols=220 Identities=14% Similarity=0.228 Sum_probs=147.7
Q ss_pred cccchhhh-ch--HHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCCcceee
Q 003253 530 GVTFDDIG-AL--ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 601 (836)
Q Consensus 530 ~~~~~di~-G~--~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~ 601 (836)
..+|++++ |. ......+...+.. . .. ..+++|+||||+|||+||+++++.+ +.+++.++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~----------~--~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKH----------P--GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHS----------T--TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhC----------C--CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 46889976 53 3334444444432 1 11 4689999999999999999999988 88899999
Q ss_pred ccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEecc
Q 003253 602 MSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT 681 (836)
Q Consensus 602 ~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTT 681 (836)
+..+...+.+.........|.......+.||||||++.+.+.+ ..+..+..+++.+. .....+||+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---~~q~~l~~~l~~l~---------~~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---GVQTELFHTFNELH---------DSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---HHHHHHHHHHHHHH---------TTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEEC
Confidence 8876544433222111223333333368999999999984321 12222223333221 12345666666
Q ss_pred CCCCC---CcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 003253 682 NRPFD---LDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPI 755 (836)
Q Consensus 682 n~~~~---Ld~~l~rRf~--~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~ai 755 (836)
+.+.. +++.+++||. ..+.+++|+.++|.+|++..+...++. ++..+..|+..+.| +.+++.++++.+...+.
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 65554 8899999996 689999999999999999998765544 34457888988875 78899888888776542
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcc
Q 003253 756 KEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCA 802 (836)
Q Consensus 756 r~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~p 802 (836)
. ...+|+.+++.+++....+
T Consensus 315 ~---------------------------~~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 315 T---------------------------TGKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp H---------------------------SSSCCCHHHHHHHTSTTTC
T ss_pred H---------------------------hCCCCCHHHHHHHHHHHhh
Confidence 2 1135888888888887653
No 66
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.65 E-value=2.5e-15 Score=169.98 Aligned_cols=180 Identities=24% Similarity=0.372 Sum_probs=133.0
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch-hcccc-
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE- 612 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s-~~~g~- 612 (836)
+|+|++.+++.+...+..+..++..+.......+++++||+||||||||++|+++|..++.+|+.++++.+.+ .|.|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5899999999999999887776665544333345689999999999999999999999999999999998887 58885
Q ss_pred cHHHHHHHHHHHH-------------------------------------------------------------------
Q 003253 613 GEKYVKAVFSLAS------------------------------------------------------------------- 625 (836)
Q Consensus 613 ~e~~i~~lf~~A~------------------------------------------------------------------- 625 (836)
.+..++.+|..|.
T Consensus 96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEE
Confidence 5666666665441
Q ss_pred -----------------------------------------------------------------------hc-CCceEE
Q 003253 626 -----------------------------------------------------------------------KI-APSVIF 633 (836)
Q Consensus 626 -----------------------------------------------------------------------~~-~psIL~ 633 (836)
+. +.+||+
T Consensus 176 ~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~ 255 (444)
T 1g41_A 176 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 255 (444)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred cCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCeee
Confidence 01 235899
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCccc------CcccEEEEecc----CCCCCCcHHHHhhccccccCCC
Q 003253 634 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DTERILVLAAT----NRPFDLDEAVIRRLPRRLMVNL 703 (836)
Q Consensus 634 IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~------~~~~vlVIaTT----n~~~~Ld~~l~rRf~~~I~v~~ 703 (836)
+||||.+.....+....-...-+.+.|+..+++.... +..++++|+|. +.+.++-|+++.||+.++.++.
T Consensus 256 ~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~ 335 (444)
T 1g41_A 256 IDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 335 (444)
T ss_dssp EETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCC
T ss_pred HHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCC
Confidence 9999999755332111122223566777777764221 34678999887 3455566899999998899999
Q ss_pred CCHHHHHHHHH
Q 003253 704 PDAPNRAKILQ 714 (836)
Q Consensus 704 P~~~eR~~Il~ 714 (836)
++.++..+|+.
T Consensus 336 lt~~e~~~Il~ 346 (444)
T 1g41_A 336 LSAADFERILT 346 (444)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999984
No 67
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.65 E-value=8.4e-16 Score=161.85 Aligned_cols=125 Identities=14% Similarity=0.240 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC--------cc---hhhHHHHHHhcCC--CcEEEEeeeccCCCcccc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN--------SD---SYSTFKSRLEKLP--DKVIVIGSHTHTDNRKEK 339 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~--------~~---~~~~l~~~l~~l~--g~v~vIgs~~~~d~~~~~ 339 (836)
...+..+|+.+.. ..|.|+||||||.+.... .+ ..+.+...|+... ..+++++++|+++
T Consensus 94 ~~~i~~~~~~~~~---~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~----- 165 (254)
T 1ixz_A 94 AARVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD----- 165 (254)
T ss_dssp HHHHHHHHHHHTT---SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGG-----
T ss_pred HHHHHHHHHHHHh---cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCch-----
Confidence 3446777887766 789999999999864321 11 2233333444322 3588899999886
Q ss_pred CCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhhhhhhcc
Q 003253 340 SHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMK 419 (836)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~~~~~~~ 419 (836)
++|+|++|++| |...|+|++|+.++|.+||+.+. +...+.
T Consensus 166 -----------------~ld~~l~r~~r-------------------f~~~i~i~~p~~~~r~~il~~~~----~~~~~~ 205 (254)
T 1ixz_A 166 -----------------ILDPALLRPGR-------------------FDRQIAIDAPDVKGREQILRIHA----RGKPLA 205 (254)
T ss_dssp -----------------GSCGGGGSTTS-------------------SCEEEECCSCCHHHHHHHHHHHH----TTSCBC
T ss_pred -----------------hCCHHHcCCCc-------------------CCeEEeeCCcCHHHHHHHHHHHH----cCCCCC
Confidence 79999999999 99999999999999999999665 334445
Q ss_pred CCchhHHHHhhccCCCcCchhhhhhh
Q 003253 420 GNLNHLRTVLGRSGLECEGLETLCIR 445 (836)
Q Consensus 420 ~n~~~i~~~l~t~g~s~~DL~~Lc~~ 445 (836)
.+.+....+..+.|++++||..+|..
T Consensus 206 ~~~~~~~la~~~~G~~~~dl~~~~~~ 231 (254)
T 1ixz_A 206 EDVDLALLAKRTPGFVGADLENLLNE 231 (254)
T ss_dssp TTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred cccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 55545555566666666666655543
No 68
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.64 E-value=1.7e-15 Score=172.93 Aligned_cols=211 Identities=23% Similarity=0.340 Sum_probs=145.8
Q ss_pred ccchhhhchHHHH---HHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 531 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 531 ~~~~di~G~~~vk---~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+|++++|++.+. ..|...+.. +. ..++||+||||||||++|++||+.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------~~----~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------GH----LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------TC----CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------CC----CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 4789999999998 777777752 11 2589999999999999999999999999999886442
Q ss_pred hcccccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEecc--
Q 003253 608 KWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAAT-- 681 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTT-- 681 (836)
....++.++..+.. ..++||||||||.+.. ..+ +.|+..++. ..+++|++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~-----~~q-------~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK-----SQQ-------DAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT------TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH-----HHH-------HHHHHHHhc------CceEEEecCCC
Confidence 23446666666553 3678999999998832 112 223333332 235556555
Q ss_pred CCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC-------CCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 682 NRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------DLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 682 n~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~-------~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
|....+++++++|| .++.++.|+.+++..+++..+... .+. ++..++.|+..+.| +.+++.++++.|+..
T Consensus 144 n~~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 144 NPSFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADM 221 (447)
T ss_dssp CGGGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred CcccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 44568999999999 478899999999999999998762 211 34457778888665 666777777777653
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhccCccc
Q 003253 754 PIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCASVSS 806 (836)
Q Consensus 754 air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~pS~~~ 806 (836)
+.. .......|+.+|+.+++.+....+..
T Consensus 222 a~~------------------------~~~~~~~It~e~v~~~l~~~~~~~dk 250 (447)
T 3pvs_A 222 AEV------------------------DDSGKRVLKPELLTEIAGERSARFDN 250 (447)
T ss_dssp SCB------------------------CTTSCEECCHHHHHHHHTCCCCC---
T ss_pred ccc------------------------ccCCCCccCHHHHHHHHhhhhhccCC
Confidence 210 00123568999999888776554433
No 69
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.64 E-value=5.5e-15 Score=149.90 Aligned_cols=199 Identities=22% Similarity=0.229 Sum_probs=139.2
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeecccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 605 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l 605 (836)
..|++++|.+...+.+...+.. ....++||+||||+|||++|+++++.+ ...++.+++...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT--------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCHHHHcCcHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 5688999999999999988863 112359999999999999999999986 345666666543
Q ss_pred chhcccccHHHHHHHHHHHH------hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEe
Q 003253 606 TSKWFGEGEKYVKAVFSLAS------KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 679 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A~------~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIa 679 (836)
.+ ...+...+.... ...+.||+|||+|.+. ... .+.++..++.. ..++.+|+
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----~~~-------~~~l~~~l~~~----~~~~~~i~ 137 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----ADA-------QAALRRTMEMY----SKSCRFIL 137 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-----HHH-------HHHHHHHHHHT----TTTEEEEE
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC-----HHH-------HHHHHHHHHhc----CCCCeEEE
Confidence 21 122222222222 2467899999999882 111 22233333321 24578888
Q ss_pred ccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Q 003253 680 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEI 758 (836)
Q Consensus 680 TTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~ 758 (836)
+||.+..+++.+.+||. .+.+++|+.++..++++..+...+.. ++..+..++..+.| +++.+.++++.++..+
T Consensus 138 ~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~---- 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG---- 211 (226)
T ss_dssp EESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC----
T ss_pred EeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC----
Confidence 99999999999999996 89999999999999999988765544 34456777777765 5555666655554321
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHH
Q 003253 759 LEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHE 798 (836)
Q Consensus 759 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~ 798 (836)
..|+.+|+++++.
T Consensus 212 ---------------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ---------------------------EVVDADTIYQITA 224 (226)
T ss_dssp ---------------------------SCBCHHHHHHHHH
T ss_pred ---------------------------ceecHHHHHHHhc
Confidence 3689999998875
No 70
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.64 E-value=6.3e-15 Score=160.86 Aligned_cols=196 Identities=19% Similarity=0.238 Sum_probs=133.8
Q ss_pred cccchhhh-c--hHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecc
Q 003253 530 GVTFDDIG-A--LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 603 (836)
Q Consensus 530 ~~~~~di~-G--~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s 603 (836)
..+|++++ | .......++..+..+ .....+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENL------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTT------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCc------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 46788876 3 444455565555421 1234689999999999999999999998 8999999998
Q ss_pred ccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC
Q 003253 604 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 683 (836)
Q Consensus 604 ~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~ 683 (836)
++...+.+.........|..... .+.||||||++.+.+.+ ..+..+..+++.+. .....+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---~~~~~l~~~l~~~~---------~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---RTQIEFFHIFNTLY---------LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---HHHHHHHHHHHHHH---------HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEecCC
Confidence 87555443332222223333332 47899999999984211 12222222332221 1134577777777
Q ss_pred CC---CCcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 684 PF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 684 ~~---~Ld~~l~rRf~--~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
+. .+++.+.+||. ..+.+++ +.+++.+|++..+...++. ++..++.|+..+ | +.+++.++++.+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 66 68999999996 5688888 9999999999999876654 455578889988 4 678888888877655
No 71
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.63 E-value=9.7e-15 Score=161.77 Aligned_cols=224 Identities=18% Similarity=0.156 Sum_probs=151.3
Q ss_pred chhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCCcceeecc
Q 003253 533 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMS 603 (836)
Q Consensus 533 ~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---------~~~~i~v~~s 603 (836)
.++++|.+...+.+...+...+. ...+.+++|+||||||||++|+++++.+ +.+++.++|.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 46789999999998887653111 1334689999999999999999999988 8889999986
Q ss_pred ccchh----------------cccccH-HHHHHHHHHHHhc-CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhc
Q 003253 604 SITSK----------------WFGEGE-KYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 665 (836)
Q Consensus 604 ~l~s~----------------~~g~~e-~~i~~lf~~A~~~-~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld 665 (836)
...+. ..|... .....++..+... .|.||||||+|.+...+ .. ..++..++..+.
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~----~~~l~~l~~~~~ 160 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GG----QDLLYRITRINQ 160 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---TH----HHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CC----ChHHHhHhhchh
Confidence 53221 112222 2344455544433 37899999999985321 01 234444444443
Q ss_pred CCcccCcccEEEEeccCCC---CCCcHHHHhhccc-cccCCCCCHHHHHHHHHHHHhh--CCC-CCcccHHHHHHHcC--
Q 003253 666 GLRTKDTERILVLAATNRP---FDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAK--EDL-SPDVDFDAIANMTD-- 736 (836)
Q Consensus 666 ~~~~~~~~~vlVIaTTn~~---~~Ld~~l~rRf~~-~I~v~~P~~~eR~~Il~~~l~~--~~l-~~d~dl~~LA~~t~-- 736 (836)
.... ..++.+|++||.+ ..+++.+.+||.. .+.+++|+.+++.+|++..+.. .+. ..+..++.++..+.
T Consensus 161 ~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 161 ELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp CC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hcCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 3210 3578889999887 6789999999975 8999999999999999998864 222 23445777888776
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhcc
Q 003253 737 -GYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVCA 802 (836)
Q Consensus 737 -G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~p 802 (836)
| .++.+.++|..|+..+..+ ....++.+|+..|+..+..
T Consensus 239 ~G-~~r~~~~~l~~a~~~a~~~--------------------------~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 239 HG-DARRALDLLRVAGEIAERR--------------------------REERVRREHVYSARAEIER 278 (387)
T ss_dssp SC-CHHHHHHHHHHHHHHHHHT--------------------------TCSCBCHHHHHHHHHHHHH
T ss_pred cc-CHHHHHHHHHHHHHHHHHc--------------------------CCCCcCHHHHHHHHHHHhh
Confidence 5 5667778888876544321 1135788888888876643
No 72
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.63 E-value=1.2e-14 Score=149.94 Aligned_cols=205 Identities=19% Similarity=0.159 Sum_probs=138.6
Q ss_pred cccchhhhc---hHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecc
Q 003253 530 GVTFDDIGA---LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 603 (836)
Q Consensus 530 ~~~~~di~G---~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s 603 (836)
..+|+++++ ...+.+.+...+.. .+..++||+||||||||++|+++++.+ +.+++.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG--------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT--------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 357888776 34666666666542 133689999999999999999999987 4778888887
Q ss_pred ccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccE-EEEeccC
Q 003253 604 SITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI-LVLAATN 682 (836)
Q Consensus 604 ~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~v-lVIaTTn 682 (836)
++....... + . .-..+.+|+|||++.+.... .....+..+++... ....+ +|++++.
T Consensus 90 ~~~~~~~~~----~----~--~~~~~~vliiDe~~~~~~~~---~~~~~l~~~l~~~~---------~~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL----L----E--GLEQFDLICIDDVDAVAGHP---LWEEAIFDLYNRVA---------EQKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG----G----T--TGGGSSEEEEETGGGGTTCH---HHHHHHHHHHHHHH---------HHCSCEEEEEESS
T ss_pred HHHHHHHHH----H----H--hccCCCEEEEeccccccCCH---HHHHHHHHHHHHHH---------HcCCCeEEEEcCC
Confidence 765432111 1 1 11347899999999883211 01222222222221 11233 4444444
Q ss_pred CCC---CCcHHHHhhcc--ccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 003253 683 RPF---DLDEAVIRRLP--RRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIK 756 (836)
Q Consensus 683 ~~~---~Ld~~l~rRf~--~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air 756 (836)
.+. .+.+.+.+||. ..+.++.|+.+++.++++.++...+.. .+..++.++..+.| +.+++.++++.+...+..
T Consensus 148 ~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 148 SPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp CTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 443 45689999986 789999999999999999999876654 44557788888865 788888888887765432
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHH
Q 003253 757 EILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHE 798 (836)
Q Consensus 757 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~ 798 (836)
+ .++|+.+|++++++
T Consensus 227 ~---------------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 227 H---------------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp H---------------------------TCCCCHHHHHHHHT
T ss_pred h---------------------------CCCCcHHHHHHHhh
Confidence 1 14699999998875
No 73
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.63 E-value=6.4e-16 Score=167.04 Aligned_cols=208 Identities=17% Similarity=0.265 Sum_probs=141.9
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch----
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS---- 607 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s---- 607 (836)
+++|++.+++.+...+...... -....+|..++||+||||||||++|+++|..+ +.+++.++|+.+..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~-----~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAG-----LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHT-----CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcC-----CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 4678888888888877632110 01123455689999999999999999999998 56789999877533
Q ss_pred -hcccccHHH-----HHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCccc-------Cccc
Q 003253 608 -KWFGEGEKY-----VKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DTER 674 (836)
Q Consensus 608 -~~~g~~e~~-----i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~-------~~~~ 674 (836)
.++|....+ ...+.......+.+||||||+|.+ +. .+.+.++..++..... +-.+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----~~-------~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----HP-------DVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----CH-------HHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----CH-------HHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 222221110 022333444555689999999988 22 2333344444322111 1146
Q ss_pred EEEEeccCC--------------------------CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC-------C
Q 003253 675 ILVLAATNR--------------------------PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE-------D 721 (836)
Q Consensus 675 vlVIaTTn~--------------------------~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~-------~ 721 (836)
+++|+|||. ...+++++++||+..+.+.+|+.+++..|++.++... +
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 789999998 4468899999999999999999999999999987652 1
Q ss_pred CC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHHH
Q 003253 722 LS---PDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIKEIL 759 (836)
Q Consensus 722 l~---~d~dl~~LA~~t~--G~sg~DL~~L~~~A~~~air~~~ 759 (836)
.. .+..++.|+.... .++.++|.++++.+...+..+.+
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 11 3445677777665 67889999999999887766543
No 74
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.61 E-value=1.5e-14 Score=148.30 Aligned_cols=190 Identities=21% Similarity=0.219 Sum_probs=132.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce--eecc-----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN--ISMS----- 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~--v~~s----- 603 (836)
..|++++|.+...+.|...+.. ...++.++|+||+|+|||++|+++++.++..... ..+.
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4688999999999999888752 1233579999999999999999999988543211 1100
Q ss_pred ---------ccchhc--ccccHHHHHHHHHHHH----hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 604 ---------SITSKW--FGEGEKYVKAVFSLAS----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 604 ---------~l~s~~--~g~~e~~i~~lf~~A~----~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
++.... .......+..++..+. ...+.+|+|||+|.+. ....+.++..++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------~~~~~~l~~~l~~~- 153 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLKTLEEP- 153 (250)
T ss_dssp HHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------HHHHHHHHHHHHSC-
T ss_pred HHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------HHHHHHHHHHHhcC-
Confidence 110000 0111233445554432 2247899999999872 12233444444432
Q ss_pred ccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 003253 669 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
..++.+|++||.+..+.+.+.+|+ ..+.+++|+.++..++++..+...+.. ++..+..++..+.| +++.+.+++
T Consensus 154 ---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~ 228 (250)
T 1njg_A 154 ---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLT 228 (250)
T ss_dssp ---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred ---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 356788888998889999999997 689999999999999999998776544 44557888999877 788888888
Q ss_pred HHHH
Q 003253 748 VTAA 751 (836)
Q Consensus 748 ~~A~ 751 (836)
+.|.
T Consensus 229 ~~~~ 232 (250)
T 1njg_A 229 DQAI 232 (250)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7775
No 75
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.61 E-value=1.1e-15 Score=164.95 Aligned_cols=118 Identities=11% Similarity=0.044 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhc-cCCCCeEEEEcCchhhhccCc----------chhhHHHHHHhcC-------------CCcEEEEe
Q 003253 273 KLLINTLFEVVFSE-SRSCPFILFMKDAEKSIAGNS----------DSYSTFKSRLEKL-------------PDKVIVIG 328 (836)
Q Consensus 273 ~~~i~~l~~~~~~~-~~~~p~Ilfi~ei~~~l~~~~----------~~~~~l~~~l~~l-------------~g~v~vIg 328 (836)
...+..+|+.+... .+..|+||||||||++..... .+.+.|...|+.. ..+|+||+
T Consensus 81 ~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ 160 (293)
T 3t15_A 81 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE
Confidence 44455666665311 137899999999999665211 2446666666522 24899999
Q ss_pred eeccCCCccccCCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHh
Q 003253 329 SHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 408 (836)
Q Consensus 329 s~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~ 408 (836)
+||+++ .+|+|++|||| |...|. +|+.++|.+||+.+
T Consensus 161 ttN~~~----------------------~ld~al~R~~R-------------------~d~~i~--~P~~~~r~~Il~~~ 197 (293)
T 3t15_A 161 TGNDFS----------------------TLYAPLIRDGR-------------------MEKFYW--APTREDRIGVCTGI 197 (293)
T ss_dssp ECSSCC----------------------C--CHHHHHHH-------------------EEEEEE--CCCHHHHHHHHHHH
T ss_pred ecCCcc----------------------cCCHHHhCCCC-------------------CceeEe--CcCHHHHHHHHHHh
Confidence 999987 48889999888 765664 79999999999965
Q ss_pred hHhhhhhhhccCCchhHHHHhhccCCCcCchhh
Q 003253 409 LDRDSETLKMKGNLNHLRTVLGRSGLECEGLET 441 (836)
Q Consensus 409 l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~ 441 (836)
+.. .+++....+..+.++++.||.-
T Consensus 198 ~~~--------~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 198 FRT--------DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HGG--------GCCCHHHHHHHHHHSCSCCHHH
T ss_pred ccC--------CCCCHHHHHHHhCCCCcccHHH
Confidence 532 2344444555677888888864
No 76
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.60 E-value=2.5e-15 Score=172.68 Aligned_cols=183 Identities=21% Similarity=0.321 Sum_probs=130.4
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCccee
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 600 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v 600 (836)
..+++++|.+...+.+...+.. ....++||+||||||||++|+++|..+ +.+|+.+
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3578899999999988887752 223589999999999999999999997 7788888
Q ss_pred eccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEec
Q 003253 601 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 680 (836)
Q Consensus 601 ~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaT 680 (836)
+++ +.+.|..+..++.+|..+....++||||| + . .. ..+.|+..+ ....+.+|++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~---~---~~----a~~~L~~~L------~~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------A---A---ID----ASNILKPSL------ARGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC------C------------------CCCT------TSSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------C---c---hh----HHHHHHHhh------cCCCEEEEec
Confidence 887 56778888889999999998889999999 0 1 01 112222222 2357899999
Q ss_pred cCCCC-----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh----CCCC-CcccHHHHHHHcCCCc-----HHHHHH
Q 003253 681 TNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMTDGYS-----GSDLKN 745 (836)
Q Consensus 681 Tn~~~-----~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~----~~l~-~d~dl~~LA~~t~G~s-----g~DL~~ 745 (836)
||.+. .+++++.+||. .+.|+.|+.+++..|++.++.. .++. .+..+..++..+.+|. +.....
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 99887 68999999996 6999999999999999988765 3333 4455667776665544 456777
Q ss_pred HHHHHHHH
Q 003253 746 LCVTAAHR 753 (836)
Q Consensus 746 L~~~A~~~ 753 (836)
++..|..+
T Consensus 377 ll~~a~~~ 384 (468)
T 3pxg_A 377 LIDEAGSK 384 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 77
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.60 E-value=1.9e-15 Score=165.32 Aligned_cols=165 Identities=21% Similarity=0.201 Sum_probs=108.1
Q ss_pred chhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc-c-chhcc
Q 003253 533 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS-I-TSKWF 610 (836)
Q Consensus 533 ~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~-l-~s~~~ 610 (836)
+++++|++.+++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.. . .....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred ccceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 45688999998888776642 147999999999999999999999999999888732 1 11111
Q ss_pred cccHH-HHHHHHHHHHhcC---CceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC-
Q 003253 611 GEGEK-YVKAVFSLASKIA---PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF- 685 (836)
Q Consensus 611 g~~e~-~i~~lf~~A~~~~---psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~- 685 (836)
|.... .....| ..... .+||||||++.+ +...+..+...+++....+.+.....+.+++||+|+|..+
T Consensus 90 g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~-----~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~ 162 (331)
T 2r44_A 90 GTMIYNQHKGNF--EVKKGPVFSNFILADEVNRS-----PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQ 162 (331)
T ss_dssp EEEEEETTTTEE--EEEECTTCSSEEEEETGGGS-----CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCC
T ss_pred CceeecCCCCce--EeccCcccccEEEEEccccC-----CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcc
Confidence 11000 000000 00112 279999999987 3223333333333221122222222345688889998543
Q ss_pred ----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC
Q 003253 686 ----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE 720 (836)
Q Consensus 686 ----~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~ 720 (836)
.+++++++||...+.++.|+.+++.+|++..+...
T Consensus 163 ~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 163 EGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp SCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred cCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccC
Confidence 38999999998789999999999999999987653
No 78
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.60 E-value=8.2e-16 Score=152.34 Aligned_cols=158 Identities=22% Similarity=0.371 Sum_probs=112.4
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCccee
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 600 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v 600 (836)
..|++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred ccccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 4578899999988888877642 223689999999999999999999987 6788888
Q ss_pred eccccc--hhcccccHHHHHHHHHHHHh-cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEE
Q 003253 601 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 677 (836)
Q Consensus 601 ~~s~l~--s~~~g~~e~~i~~lf~~A~~-~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlV 677 (836)
++..+. ..+.+.....+..++..+.+ ..+.||+|||+|.+...+....... ....+..++ + ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~-~~~~l~~~~---~------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD-AGNMLKPAL---A------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC-CHHHHHHHH---H------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH-HHHHHHHhh---c------cCCeEE
Confidence 887764 23445556667777776544 4578999999999964432111111 112222222 1 245778
Q ss_pred EeccCCCC-----CCcHHHHhhccccccCCCCCHHHHHHHH
Q 003253 678 LAATNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKIL 713 (836)
Q Consensus 678 IaTTn~~~-----~Ld~~l~rRf~~~I~v~~P~~~eR~~Il 713 (836)
|++||.+. .+++++.+||. .+.++.|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 88888765 78999999996 6999999999998875
No 79
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.60 E-value=5.8e-15 Score=162.06 Aligned_cols=166 Identities=20% Similarity=0.285 Sum_probs=99.1
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CCcceeec
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISM 602 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~-------~~~i~v~~ 602 (836)
..+|++++|.+.+++.+...... ....++||+||||||||++|+++|+.++ .+| +|
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~--------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~ 82 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SS 82 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CC
T ss_pred CCCchhccChHHHHHHHHHHhhC--------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccc---cc
Confidence 46899999999987765544331 1124699999999999999999999986 232 11
Q ss_pred cccc---------------------hhcccccHHH------HHHHHHHH---------HhcCCceEEEccchhhhcCCCC
Q 003253 603 SSIT---------------------SKWFGEGEKY------VKAVFSLA---------SKIAPSVIFVDEVDSMLGRREN 646 (836)
Q Consensus 603 s~l~---------------------s~~~g~~e~~------i~~lf~~A---------~~~~psIL~IDEID~L~~~r~~ 646 (836)
.... ....+.++.. +...+..+ ....++|||||||+.+ +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l-----~ 157 (350)
T 1g8p_A 83 PNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLL-----E 157 (350)
T ss_dssp SSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-----C
T ss_pred cccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhC-----C
Confidence 1110 0001111111 01112111 1113689999999988 2
Q ss_pred CchHHHHHHHHHHHH--HHhcCCcccCcccEEEEeccCCCC-CCcHHHHhhccccccCCCC-CHHHHHHHHHHHH
Q 003253 647 PGEHEAMRKMKNEFM--VNWDGLRTKDTERILVLAATNRPF-DLDEAVIRRLPRRLMVNLP-DAPNRAKILQVIL 717 (836)
Q Consensus 647 ~~~~~~~~~il~~ll--~~ld~~~~~~~~~vlVIaTTn~~~-~Ld~~l~rRf~~~I~v~~P-~~~eR~~Il~~~l 717 (836)
...+..+..+++.-. ....+.....+.++++|+|||... .+++++++||+..+.++.| +.+++.+|++..+
T Consensus 158 ~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 158 DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHH
Confidence 222222222222100 000111111124789999999744 8999999999888999988 6777878887743
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.59 E-value=4.3e-15 Score=180.65 Aligned_cols=224 Identities=20% Similarity=0.304 Sum_probs=156.2
Q ss_pred cchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCcceee
Q 003253 532 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 601 (836)
Q Consensus 532 ~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~ 601 (836)
.|++++|.+...+.+.+.+.. ....++||+||||||||++|+++|..+ +..++.++
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 578899999988888876652 234689999999999999999999987 45566777
Q ss_pred ccccc--hhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEe
Q 003253 602 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 679 (836)
Q Consensus 602 ~s~l~--s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIa 679 (836)
+..+. ..+.|..+..++.+|..+....++||||||++.+++.......... ..+.+ .... ....+.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~---~~~~L----~~~l--~~~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD---AANLI----KPLL--SSGKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH---HHHHH----SSCS--SSCCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHH---HHHHH----HHHH--hCCCeEEEE
Confidence 76665 3577888899999999998888899999999999876543222211 12222 1221 235678888
Q ss_pred ccCCC-----CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh----CCCC-CcccHHHHHHHcCC-----CcHHHHH
Q 003253 680 ATNRP-----FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK----EDLS-PDVDFDAIANMTDG-----YSGSDLK 744 (836)
Q Consensus 680 TTn~~-----~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~----~~l~-~d~dl~~LA~~t~G-----~sg~DL~ 744 (836)
+|+.+ ..+++++.+||. .+.|+.|+.+++.+|++.++.. ..+. .+..+..++..+.+ +.+..+.
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 88864 357889999996 7999999999999999987754 2222 34445666665544 4566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 003253 745 NLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHERVC 801 (836)
Q Consensus 745 ~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~v~ 801 (836)
.++.+|+.....+ + .......++.+|+..++..+.
T Consensus 400 ~lld~a~~~~~~~-------------------~---~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 400 DVIDEAGARARLM-------------------P---VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHS-------------------S---SCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcc-------------------c---ccccCCccCHHHHHHHHHHhc
Confidence 7887776432110 0 001224578888888887764
No 81
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.59 E-value=5.2e-15 Score=158.16 Aligned_cols=124 Identities=17% Similarity=0.247 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhcc--------CcchhhHHHHHHhcCCC-----cEEEEeeeccCCCcccc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAG--------NSDSYSTFKSRLEKLPD-----KVIVIGSHTHTDNRKEK 339 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~--------~~~~~~~l~~~l~~l~g-----~v~vIgs~~~~d~~~~~ 339 (836)
...+..+|+.+.. ..|.|+||||||.+... ..+....+...+..++| .+++++++|+++
T Consensus 118 ~~~i~~~~~~~~~---~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~----- 189 (278)
T 1iy2_A 118 AARVRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD----- 189 (278)
T ss_dssp HHHHHHHHHHHHT---SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTT-----
T ss_pred HHHHHHHHHHHHh---cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCch-----
Confidence 3446778887776 78999999999985432 11222333333333332 588999999886
Q ss_pred CCCCCccccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhhhhhhcc
Q 003253 340 SHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSETLKMK 419 (836)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~~~~~~~ 419 (836)
++|+|++|++| |...|+|++|+.++|.+||+.++ +...+.
T Consensus 190 -----------------~ld~~l~r~~r-------------------f~~~i~i~~p~~~~r~~il~~~~----~~~~~~ 229 (278)
T 1iy2_A 190 -----------------ILDPALLRPGR-------------------FDRQIAIDAPDVKGREQILRIHA----RGKPLA 229 (278)
T ss_dssp -----------------SSCHHHHSTTS-------------------SCCEEECCCCCHHHHHHHHHHHH----TTSCBC
T ss_pred -----------------hCCHhHcCCCc-------------------CCeEEEeCCcCHHHHHHHHHHHH----ccCCCC
Confidence 68999988888 99999999999999999999665 233444
Q ss_pred CCchhHHHHhhccCCCcCchhhhhh
Q 003253 420 GNLNHLRTVLGRSGLECEGLETLCI 444 (836)
Q Consensus 420 ~n~~~i~~~l~t~g~s~~DL~~Lc~ 444 (836)
.+.+....+..+.|++++||..+|.
T Consensus 230 ~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 230 EDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp TTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred cccCHHHHHHHcCCCCHHHHHHHHH
Confidence 4554444555556666666655444
No 82
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=2.1e-14 Score=159.60 Aligned_cols=195 Identities=20% Similarity=0.229 Sum_probs=133.6
Q ss_pred chhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----------CCCcceee
Q 003253 533 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----------GANFINIS 601 (836)
Q Consensus 533 ~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-----------~~~~i~v~ 601 (836)
.++++|.+...+.+...+..... ...+.+++|+||||||||++|+++++++ +.+++.++
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 36789999999988887753211 1334689999999999999999999988 88999998
Q ss_pred ccccc-h----------hc-------cccc-HHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 602 MSSIT-S----------KW-------FGEG-EKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 602 ~s~l~-s----------~~-------~g~~-e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
|.... + .. .+.. ...+..++..+....+ ||+|||+|.+..... +.. ++..++.
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~----~~~---~l~~l~~ 160 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG----GDI---VLYQLLR 160 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT----SHH---HHHHHHT
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC----Cce---eHHHHhc
Confidence 76533 1 11 1111 2334555555544444 999999999853321 111 1233322
Q ss_pred HhcCCcccCcccEEEEeccCCC---CCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhh--C-CCCCcccHHHHHHHcC
Q 003253 663 NWDGLRTKDTERILVLAATNRP---FDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAK--E-DLSPDVDFDAIANMTD 736 (836)
Q Consensus 663 ~ld~~~~~~~~~vlVIaTTn~~---~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~--~-~l~~d~dl~~LA~~t~ 736 (836)
.. .++.+|+|||.+ ..+++.+.+||...+.|++|+.++..+|++..+.. . ....+..++.++..+.
T Consensus 161 ~~--------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~ 232 (384)
T 2qby_B 161 SD--------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISA 232 (384)
T ss_dssp SS--------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHH
T ss_pred CC--------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHH
Confidence 11 568888999887 67899999999889999999999999999998864 1 1123445677787776
Q ss_pred C--CcHHHHHHHHHHHHHH
Q 003253 737 G--YSGSDLKNLCVTAAHR 753 (836)
Q Consensus 737 G--~sg~DL~~L~~~A~~~ 753 (836)
+ -..+.+.++|+.|...
T Consensus 233 ~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 233 KEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp TTCCCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHH
Confidence 2 2445566777776543
No 83
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.58 E-value=7.5e-15 Score=163.79 Aligned_cols=223 Identities=20% Similarity=0.270 Sum_probs=136.9
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhh----------------cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFC----------------KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 598 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~----------------~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i 598 (836)
.++|++.+++.|...+..+..+..... ..+...+..++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 468999999999988754333322110 0112345578999999999999999999999999999
Q ss_pred eeeccccc-hhccccc-HHHHHHHHHHH----HhcCCceEEEccchhhhcCCCCCchH--HHHHHHHHHHHHHhcCCcc-
Q 003253 599 NISMSSIT-SKWFGEG-EKYVKAVFSLA----SKIAPSVIFVDEVDSMLGRRENPGEH--EAMRKMKNEFMVNWDGLRT- 669 (836)
Q Consensus 599 ~v~~s~l~-s~~~g~~-e~~i~~lf~~A----~~~~psIL~IDEID~L~~~r~~~~~~--~~~~~il~~ll~~ld~~~~- 669 (836)
.+++..+. ..+.|.. +..+..++..+ ....++||||||||.+...+...... .....+.+.|+..+++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3455553 44556665543 23467999999999996543221100 0001245556666654310
Q ss_pred ----------------cCcccEEEEeccCC-----------------------------------------CCCCcHHHH
Q 003253 670 ----------------KDTERILVLAATNR-----------------------------------------PFDLDEAVI 692 (836)
Q Consensus 670 ----------------~~~~~vlVIaTTn~-----------------------------------------~~~Ld~~l~ 692 (836)
-...++++|+|+|. ...+.++++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 01144677777662 113678999
Q ss_pred hhccccccCCCCCHHHHHHHHHH----HHh-------hCCCC---CcccHHHHHHHcC--CCcHHHHHHHHHHHHHHHHH
Q 003253 693 RRLPRRLMVNLPDAPNRAKILQV----ILA-------KEDLS---PDVDFDAIANMTD--GYSGSDLKNLCVTAAHRPIK 756 (836)
Q Consensus 693 rRf~~~I~v~~P~~~eR~~Il~~----~l~-------~~~l~---~d~dl~~LA~~t~--G~sg~DL~~L~~~A~~~air 756 (836)
+||+.++.|++++.++...|+.. ++. ..+.. .+..+..|+.... ....+.|.++++.+...++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 99998999999999999998862 221 11111 2334566666543 35678888888887776554
Q ss_pred H
Q 003253 757 E 757 (836)
Q Consensus 757 ~ 757 (836)
+
T Consensus 342 ~ 342 (376)
T 1um8_A 342 D 342 (376)
T ss_dssp T
T ss_pred h
Confidence 3
No 84
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=1.4e-14 Score=157.80 Aligned_cols=184 Identities=17% Similarity=0.174 Sum_probs=129.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 610 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~ 610 (836)
.+|++++|++.+++.+++.+.. ...++.+|++||||||||++|+++|++++.+++.+++++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK-------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT-------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 4789999999999999988862 23446789999999999999999999999999999986632
Q ss_pred cccHHHHHHHHHHHHhc-----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC
Q 003253 611 GEGEKYVKAVFSLASKI-----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF 685 (836)
Q Consensus 611 g~~e~~i~~lf~~A~~~-----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~ 685 (836)
...++..+..+... .+.||||||+|.+.+ ...+.. |+..++.. ..++.+|+|||.+.
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----~~~~~~-------L~~~le~~----~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----AESQRH-------LRSFMEAY----SSNCSIIITANNID 147 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----HHHHHH-------HHHHHHHH----GGGCEEEEEESSGG
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----HHHHHH-------HHHHHHhC----CCCcEEEEEeCCcc
Confidence 33444444443332 568999999998831 112222 22222221 24578888999999
Q ss_pred CCcHHHHhhccccccCCCCCHHHHHHHHHHHH-------hhCCCC-Cc-ccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 686 DLDEAVIRRLPRRLMVNLPDAPNRAKILQVIL-------AKEDLS-PD-VDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 686 ~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l-------~~~~l~-~d-~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
.+++++++|| .++.|+.|+.++|.+|++.++ ...++. ++ ..++.++..+.|... ++.+.++.++
T Consensus 148 ~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R-~a~~~L~~~~ 220 (324)
T 3u61_B 148 GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR-KTIGELDSYS 220 (324)
T ss_dssp GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT-HHHHHHHHHG
T ss_pred ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH-HHHHHHHHHh
Confidence 9999999999 579999999999776655443 333443 34 557788888776444 3444444443
No 85
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=8e-14 Score=153.01 Aligned_cols=184 Identities=19% Similarity=0.231 Sum_probs=127.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------CCcceeeccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISMSS 604 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~------~~~i~v~~s~ 604 (836)
.+|++++|++.+++.+...+.. ..+ .++||+||||+|||++|+++|+.++ ..++.+++++
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKS-------------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTC-------------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCHHHhhCCHHHHHHHHHHHhc-------------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 4789999999999998887752 112 3599999999999999999999864 3567777665
Q ss_pred cchhcccccHHHHHHHHHHHH----------------hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 605 ITSKWFGEGEKYVKAVFSLAS----------------KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 605 l~s~~~g~~e~~i~~lf~~A~----------------~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
..+ ...++..+.... ...+.||||||+|.+. ...+ +.++..++..
T Consensus 100 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----~~~~-------~~Ll~~le~~- 160 (353)
T 1sxj_D 100 ERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----ADAQ-------SALRRTMETY- 160 (353)
T ss_dssp CCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----HHHH-------HHHHHHHHHT-
T ss_pred ccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----HHHH-------HHHHHHHHhc-
Confidence 321 112222221111 1234699999999882 2222 2233333322
Q ss_pred ccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 003253 669 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
..+..+|.+||.+..+.+.+++|+. .+.+++|+.++...+++..+...++. ++..+..++..+.|. .+.+.+++
T Consensus 161 ---~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l 235 (353)
T 1sxj_D 161 ---SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITLL 235 (353)
T ss_dssp ---TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHH
T ss_pred ---CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHH
Confidence 1345666788899999999999995 88999999999999999988776654 455678889888874 45555555
Q ss_pred HHHHH
Q 003253 748 VTAAH 752 (836)
Q Consensus 748 ~~A~~ 752 (836)
+.++.
T Consensus 236 ~~~~~ 240 (353)
T 1sxj_D 236 QSASK 240 (353)
T ss_dssp HHTHH
T ss_pred HHHHH
Confidence 55544
No 86
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=3e-14 Score=165.78 Aligned_cols=192 Identities=20% Similarity=0.234 Sum_probs=124.9
Q ss_pred ccchhhhchHHHHHHHHHHHhcccc-ChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccch
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQ-RPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 607 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~-~~e~~~~~~~--~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s 607 (836)
.+|++++|.+.+++.|.+++..... .+..+...+. ..+++++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 4799999999999999998864221 1122222211 124579999999999999999999999999999999987654
Q ss_pred hcccccH-------HHHHHHHHHH-----HhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccE
Q 003253 608 KWFGEGE-------KYVKAVFSLA-----SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI 675 (836)
Q Consensus 608 ~~~g~~e-------~~i~~lf~~A-----~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~v 675 (836)
....... ..+..+|..+ ....+.||||||+|.+.... +.. +..+...++. ...++
T Consensus 116 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~~~----l~~L~~~l~~----~~~~i 182 (516)
T 1sxj_A 116 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----RGG----VGQLAQFCRK----TSTPL 182 (516)
T ss_dssp HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----TTH----HHHHHHHHHH----CSSCE
T ss_pred HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----HHH----HHHHHHHHHh----cCCCE
Confidence 3211100 0022233333 23467899999999995432 111 1222222222 12446
Q ss_pred EEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCC
Q 003253 676 LVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDG 737 (836)
Q Consensus 676 lVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G 737 (836)
++|+++.....+.+ +.+|+ ..+.|+.|+.+++.+++...+...++. ++..+..|+..+.|
T Consensus 183 Ili~~~~~~~~l~~-l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 183 ILICNERNLPKMRP-FDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp EEEESCTTSSTTGG-GTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred EEEEcCCCCccchh-hHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 66655544444543 44444 689999999999999999888765543 34457888888866
No 87
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=1.6e-13 Score=151.73 Aligned_cols=202 Identities=17% Similarity=0.215 Sum_probs=135.1
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCCcceeeccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSS 604 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l------~~~~i~v~~s~ 604 (836)
...++++|.+...+.|.+.+...+. ...+..++|+||+|+|||++++++++.+ +.+++.+++..
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 3447899999999988886653111 1334689999999999999999999988 88899998754
Q ss_pred cch------h----------ccccc-HHHHHHHHHHHHhcC-CceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcC
Q 003253 605 ITS------K----------WFGEG-EKYVKAVFSLASKIA-PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 666 (836)
Q Consensus 605 l~s------~----------~~g~~-e~~i~~lf~~A~~~~-psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~ 666 (836)
... . ..+.. ......++....... |.||+|||++.+...... .++..++..++.
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~--------~~l~~l~~~~~~ 158 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND--------DILYKLSRINSE 158 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS--------THHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC--------HHHHHHhhchhh
Confidence 211 1 01111 223445555555443 899999999998643211 123344444433
Q ss_pred CcccCcccEEEEeccCCC---CCCcHHHHhhcc-ccccCCCCCHHHHHHHHHHHHhhCC---CCCcccHHHHHHHcC---
Q 003253 667 LRTKDTERILVLAATNRP---FDLDEAVIRRLP-RRLMVNLPDAPNRAKILQVILAKED---LSPDVDFDAIANMTD--- 736 (836)
Q Consensus 667 ~~~~~~~~vlVIaTTn~~---~~Ld~~l~rRf~-~~I~v~~P~~~eR~~Il~~~l~~~~---l~~d~dl~~LA~~t~--- 736 (836)
. ...++.+|++|+.+ ..+++.+.+||. ..+.+++++.++..++++..+.... ...+..+..++..+.
T Consensus 159 ~---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 159 V---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp C---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred c---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 3 23568888888876 467888999986 3899999999999999998776321 123444666777766
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 003253 737 GYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 737 G~sg~DL~~L~~~A~~~a 754 (836)
| .++.+.++|..|+..+
T Consensus 236 G-~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 236 G-DARRALDLLRVSGEIA 252 (386)
T ss_dssp C-CHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHH
Confidence 5 4556667777776544
No 88
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=3.7e-13 Score=149.46 Aligned_cols=203 Identities=14% Similarity=0.071 Sum_probs=135.8
Q ss_pred chhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCCcceeeccccchh
Q 003253 533 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK 608 (836)
Q Consensus 533 ~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~s~l~s~ 608 (836)
.++++|.+...+.+...+..... +. ....+.++|+||||+|||+++++++..+ +.+++.++|....+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~-------~~-~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR-------NP-GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH-------ST-TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-------CC-CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 36799999999888887753211 11 1111389999999999999999999998 577888887653210
Q ss_pred ---------c-------cccc-HHHHHHHHHHHHh-cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCccc
Q 003253 609 ---------W-------FGEG-EKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 670 (836)
Q Consensus 609 ---------~-------~g~~-e~~i~~lf~~A~~-~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~ 670 (836)
. .+.. ......+...... ..|.||+|||++.+ + ...+..++..+......
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----~-------~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----A-------PDILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----C-------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----c-------hHHHHHHHHHHHhCCCC
Confidence 0 1111 1222333333332 35789999999987 1 12334444444332211
Q ss_pred CcccEEEEeccCCC---CCCcHHHHhhccc-cccCCCCCHHHHHHHHHHHHhh---CCCCCcccHHHHHHHcC-------
Q 003253 671 DTERILVLAATNRP---FDLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAK---EDLSPDVDFDAIANMTD------- 736 (836)
Q Consensus 671 ~~~~vlVIaTTn~~---~~Ld~~l~rRf~~-~I~v~~P~~~eR~~Il~~~l~~---~~l~~d~dl~~LA~~t~------- 736 (836)
...++.+|++||.+ ..+++.+.+||.. .+.|++++.++..++++..+.. .....+..+..++..+.
T Consensus 156 ~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (389)
T 1fnn_A 156 GAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDT 235 (389)
T ss_dssp SSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCT
T ss_pred CcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCC
Confidence 11468888888887 6788999999865 7999999999999999998865 22234556788888884
Q ss_pred -CCcHHHHHHHHHHHHHHHH
Q 003253 737 -GYSGSDLKNLCVTAAHRPI 755 (836)
Q Consensus 737 -G~sg~DL~~L~~~A~~~ai 755 (836)
+..++.+.++|+.|+..+.
T Consensus 236 ~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 236 NRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp TSCCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHH
Confidence 2366778888888776553
No 89
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.53 E-value=5.2e-13 Score=146.67 Aligned_cols=196 Identities=21% Similarity=0.249 Sum_probs=133.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 610 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~ 610 (836)
.+|++++|.+.+++.+...+..... . ..++.+++|+||||+|||+||+++|+.++.++...+.+.+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~------~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM------R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH------H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh------c---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 3788999999888888776642110 0 134468999999999999999999999998876665443321
Q ss_pred cccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc------cc------CcccEEEE
Q 003253 611 GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR------TK------DTERILVL 678 (836)
Q Consensus 611 g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~------~~------~~~~vlVI 678 (836)
...+..++.. .....|+||||++.+.. ...+. ++ ..+... +.. .. .-.++.++
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----~~~e~---L~-~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNK-----AVEEL---LY-SAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCH-----HHHHH---HH-HHHHTS-CCCC---------------CCCEEE
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCH-----HHHHH---HH-HHHHhc-ccceeeccCcccccccccCCCeEEE
Confidence 1223333321 12468999999998831 11111 11 111111 000 00 01246777
Q ss_pred eccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 003253 679 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 679 aTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~a 754 (836)
++|+.+..|++++++||...+.+++|+.+++.++++......++. ++..+..||..+.| +++++.++++.+...+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence 889999999999999998788999999999999999988766554 44557888988887 5577778887776544
No 90
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.53 E-value=1.8e-14 Score=177.33 Aligned_cols=200 Identities=22% Similarity=0.314 Sum_probs=132.3
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCccee
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 600 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v 600 (836)
.++++++|.+.....+.+.+.. +..+++||+||||||||++|+++|..+ +.+++.+
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCCcccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 3678899999888888776642 223579999999999999999999988 7889999
Q ss_pred eccccc--hhcccccHHHHHHHHHHHHhc-CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEE
Q 003253 601 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILV 677 (836)
Q Consensus 601 ~~s~l~--s~~~g~~e~~i~~lf~~A~~~-~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlV 677 (836)
+++.+. ..+.|+.+..+..+|..+... .|+||||||++.+.+.....+..... +.+...+. ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~----~~L~~~l~------~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAG----NMLKPALA------RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHH------TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHH----HHHHHHHh------CCCeEE
Confidence 998886 467788888999999998875 68999999999997654332222222 22222222 245778
Q ss_pred EeccCCCC----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHc-----CCCcHHHH
Q 003253 678 LAATNRPF----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMT-----DGYSGSDL 743 (836)
Q Consensus 678 IaTTn~~~----~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~----~l~-~d~dl~~LA~~t-----~G~sg~DL 743 (836)
|++||.+. .+++++.+||. .+.|+.|+.+++.+|++.++... ++. .+..+..++..+ +.|.+...
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHH
Confidence 88888764 47899999996 59999999999999999877632 222 344455566544 45667777
Q ss_pred HHHHHHHHHHHH
Q 003253 744 KNLCVTAAHRPI 755 (836)
Q Consensus 744 ~~L~~~A~~~ai 755 (836)
..++.+|+....
T Consensus 382 i~lldea~a~~~ 393 (854)
T 1qvr_A 382 IDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788877765543
No 91
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.52 E-value=1.5e-14 Score=143.09 Aligned_cols=150 Identities=21% Similarity=0.399 Sum_probs=105.8
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCccee
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 600 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v 600 (836)
..|++++|.+...+.+.+.+.. ....++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred cccchhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 3577889999888888776642 223689999999999999999999987 6777888
Q ss_pred eccccch--hcccccHHHHHHHHHHHHhc-CCceEEEccchhhhcCCC-CCchHHHHHHHHHHHHHHhcCCcccCcccEE
Q 003253 601 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRE-NPGEHEAMRKMKNEFMVNWDGLRTKDTERIL 676 (836)
Q Consensus 601 ~~s~l~s--~~~g~~e~~i~~lf~~A~~~-~psIL~IDEID~L~~~r~-~~~~~~~~~~il~~ll~~ld~~~~~~~~~vl 676 (836)
++..+.. .+.+.....+..++..+... .+.||||||++.+.+.+. ....... ...+..+ ++ ..+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~-~~~l~~~---~~------~~~~~ 154 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDA-GNILKPM---LA------RGELR 154 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCT-HHHHHHH---HH------TTCSC
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHH-HHHHHHH---Hh------cCCee
Confidence 7766542 23444555677777777665 678999999999974432 1111111 1122222 21 24578
Q ss_pred EEeccCCCC-----CCcHHHHhhccccccCCCCC
Q 003253 677 VLAATNRPF-----DLDEAVIRRLPRRLMVNLPD 705 (836)
Q Consensus 677 VIaTTn~~~-----~Ld~~l~rRf~~~I~v~~P~ 705 (836)
+|++||.+. .+++++++||. .+.++.|+
T Consensus 155 ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 155 CIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 888888764 68999999997 58888885
No 92
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.6e-13 Score=147.59 Aligned_cols=160 Identities=9% Similarity=0.071 Sum_probs=110.6
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCcceeecccc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 605 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v~~s~l 605 (836)
+.+.++..+.+...+...+. ..++.+++|+||||||||++++++++++ .+.+++++|..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~----------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM----------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 45555555555555542111 2344799999999999999999999998 356888998664
Q ss_pred chh----------c------ccccHHHHHHHHHHH--HhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCC
Q 003253 606 TSK----------W------FGEGEKYVKAVFSLA--SKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 667 (836)
Q Consensus 606 ~s~----------~------~g~~e~~i~~lf~~A--~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~ 667 (836)
.+. + .+.....+..+|... ....+.||+|||+|.|. .+..+ ..++... .
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------~q~~L----~~l~~~~-~- 158 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------SEKIL----QYFEKWI-S- 158 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------CTHHH----HHHHHHH-H-
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------cchHH----HHHHhcc-c-
Confidence 321 2 133455677788764 34567899999999995 22333 3333211 1
Q ss_pred cccCcccEEEEeccCCCCCCc----HHHHhhcc-ccccCCCCCHHHHHHHHHHHHhhC
Q 003253 668 RTKDTERILVLAATNRPFDLD----EAVIRRLP-RRLMVNLPDAPNRAKILQVILAKE 720 (836)
Q Consensus 668 ~~~~~~~vlVIaTTn~~~~Ld----~~l~rRf~-~~I~v~~P~~~eR~~Il~~~l~~~ 720 (836)
....+++||+++|..+..+ +.+.+||. .+|.|++++.++..+|++..+...
T Consensus 159 --~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 159 --SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp --CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred --ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 2346899999999887544 34567886 579999999999999999988763
No 93
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.51 E-value=4.3e-14 Score=171.82 Aligned_cols=184 Identities=21% Similarity=0.300 Sum_probs=130.4
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCCccee
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 600 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----------~~~~i~v 600 (836)
..+++++|.+..++.+...+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 3578899999999998887752 233689999999999999999999997 6777777
Q ss_pred eccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEec
Q 003253 601 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 680 (836)
Q Consensus 601 ~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaT 680 (836)
++ ...+.|+.+..++.+|..+....++||||| . . ....+.++..+ ....+.+|++
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------~-------~~~~~~L~~~l------~~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A-------IDASNILKPSL------ARGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C----------------------CCCT------TSSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------c-------hhHHHHHHHHH------hcCCEEEEeC
Confidence 77 456788888899999999999999999999 1 1 01112222222 2356899999
Q ss_pred cCCCC-----CCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhC----CCC-CcccHHHHHHHc-----CCCcHHHHHH
Q 003253 681 TNRPF-----DLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKE----DLS-PDVDFDAIANMT-----DGYSGSDLKN 745 (836)
Q Consensus 681 Tn~~~-----~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~----~l~-~d~dl~~LA~~t-----~G~sg~DL~~ 745 (836)
||... .+++++++|| ..+.|+.|+.+++.+||+.++... ++. .+..+..++..+ +++.+.....
T Consensus 298 t~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 99887 7999999999 579999999999999999877652 222 334455555544 3556777777
Q ss_pred HHHHHHHHH
Q 003253 746 LCVTAAHRP 754 (836)
Q Consensus 746 L~~~A~~~a 754 (836)
++..|+..+
T Consensus 377 ll~~a~~~~ 385 (758)
T 3pxi_A 377 LIDEAGSKV 385 (758)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
No 94
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=3.7e-13 Score=145.50 Aligned_cols=183 Identities=19% Similarity=0.188 Sum_probs=129.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeecccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 605 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l 605 (836)
.+|++++|++.+.+.|...+.. .+.+ ++||+||+|+|||++|+++++.+ +.+++.+++++.
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-------------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-------------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-------------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 4688999999999999988752 1222 49999999999999999999987 345666766542
Q ss_pred chhcccccHHHHHHHHHHHH-------hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEE
Q 003253 606 TSKWFGEGEKYVKAVFSLAS-------KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVL 678 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A~-------~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVI 678 (836)
. ....++.++.... ...+.||+|||+|.+. ... .+.++..++. ....+.+|
T Consensus 84 ~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----~~~-------~~~L~~~le~----~~~~~~~i 141 (323)
T 1sxj_B 84 R------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----AGA-------QQALRRTMEL----YSNSTRFA 141 (323)
T ss_dssp C------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----HHH-------HHTTHHHHHH----TTTTEEEE
T ss_pred c------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----HHH-------HHHHHHHHhc----cCCCceEE
Confidence 1 1234455554443 2247899999999882 111 2223333332 12457778
Q ss_pred eccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 679 AATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 679 aTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
++||.+..+.+.+.+|+. .+.+++|+.++..++++..+...++. ++..+..++..+.|. .+.+.++++.++
T Consensus 142 l~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~~l~~~~ 213 (323)
T 1sxj_B 142 FACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAINNLQSTV 213 (323)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred EEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 888989999999999994 89999999999999999988766544 445577888888764 444445544444
No 95
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.49 E-value=3.3e-13 Score=149.21 Aligned_cols=191 Identities=20% Similarity=0.210 Sum_probs=132.4
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcc--eeecc-----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI--NISMS----- 603 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i--~v~~s----- 603 (836)
.+|++++|.+.+.+.|...+.. .+.++.+||+||+|+|||++|+++|+.++.... ...|.
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 4688999999999999988752 123357999999999999999999999864221 11111
Q ss_pred ---------ccchhc--ccccHHHHHHHHHHHHh----cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc
Q 003253 604 ---------SITSKW--FGEGEKYVKAVFSLASK----IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 668 (836)
Q Consensus 604 ---------~l~s~~--~g~~e~~i~~lf~~A~~----~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~ 668 (836)
++..-. .......++.++..+.. ..+.||+|||+|.+ +. ...+.++..++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l-----~~-------~~~~~Ll~~le~-- 145 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----SR-------HSFNALLKTLEE-- 145 (373)
T ss_dssp HHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS-----CH-------HHHHHHHHHHHS--
T ss_pred HHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchh-----cH-------HHHHHHHHHHhc--
Confidence 110000 00111235566665543 24689999999988 21 123334444443
Q ss_pred ccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHH
Q 003253 669 TKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLC 747 (836)
Q Consensus 669 ~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~ 747 (836)
...++++|++|+.+..+.+.+.+|+ ..+.++.|+.++..++++..+...++. ++..+..++..+.| +.+++.+++
T Consensus 146 --~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l 221 (373)
T 1jr3_A 146 --PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLT 221 (373)
T ss_dssp --CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHH
T ss_pred --CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHH
Confidence 2356788888888888999999998 789999999999999999998876654 34457788888876 677787887
Q ss_pred HHHHH
Q 003253 748 VTAAH 752 (836)
Q Consensus 748 ~~A~~ 752 (836)
+.+..
T Consensus 222 ~~~~~ 226 (373)
T 1jr3_A 222 DQAIA 226 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 96
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.49 E-value=1.6e-13 Score=148.05 Aligned_cols=187 Identities=22% Similarity=0.238 Sum_probs=129.8
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCCcceeecccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 605 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l 605 (836)
.+|++++|++.+++.+...+.. ... .++||+||||+|||++|+++|+.+ +.+++.+++++.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVER-------------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTT-------------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred CCHHHHhCCHHHHHHHHHHHhC-------------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 5799999999999988876642 122 349999999999999999999987 345777887664
Q ss_pred chhcccccHHHHHHHHHHH-H-hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC
Q 003253 606 TSKWFGEGEKYVKAVFSLA-S-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 683 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A-~-~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~ 683 (836)
.+ .......+..+.... . ...+.||+|||+|.+. . ...+.++..++. ...++.+|++||.
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----~-------~~~~~L~~~le~----~~~~~~~i~~~~~ 141 (319)
T 2chq_A 80 RG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----A-------DAQAALRRTMEM----YSKSCRFILSCNY 141 (319)
T ss_dssp TC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----H-------HHHHTTGGGTSS----SSSSEEEEEEESC
T ss_pred cC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----H-------HHHHHHHHHHHh----cCCCCeEEEEeCC
Confidence 22 111111222221000 0 1347899999999882 1 123334444433 2356788889999
Q ss_pred CCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 684 PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 684 ~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
+..+.+.+.+||. .+.+++|+.+++..++...+.+.++. ++..+..++..+.| +.+.+.++++.++
T Consensus 142 ~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 142 VSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp GGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred hhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999999994 89999999999999999999877665 44556778877766 4445555555544
No 97
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.47 E-value=1.1e-13 Score=146.41 Aligned_cols=201 Identities=18% Similarity=0.167 Sum_probs=111.0
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CCcceeeccccch
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS 607 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~---~~~i~v~~s~l~s 607 (836)
.+|++++|.+...+.+.+.+.... ....++||+||||||||++|+++++.+. .+|+.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred cccccceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 478889999888888777665311 1225799999999999999999999874 7899999987632
Q ss_pred h-----cccccHHHH-------HHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccE
Q 003253 608 K-----WFGEGEKYV-------KAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERI 675 (836)
Q Consensus 608 ~-----~~g~~e~~i-------~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~v 675 (836)
. .+|...... ...+..+ ..++||||||+.+ +...+..+.++++.......+.......++
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l-----~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----PMMVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGS-----CHHHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred hHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhc-----CHHHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 2 222211110 1122222 3589999999988 222222222222210000001111112467
Q ss_pred EEEeccCCC-------CCCcHHHHhhccccccCCCCCHHHH----HHHHHHHHhh----CCCC-----CcccHHHHHHHc
Q 003253 676 LVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR----AKILQVILAK----EDLS-----PDVDFDAIANMT 735 (836)
Q Consensus 676 lVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR----~~Il~~~l~~----~~l~-----~d~dl~~LA~~t 735 (836)
.+|+|||.+ ..+.+.+.+||. .+.+..|+..+| ..+++.++.. .+.. .+..+..|....
T Consensus 143 ~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~ 221 (265)
T 2bjv_A 143 RLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYR 221 (265)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSC
T ss_pred EEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCC
Confidence 889999874 357899999995 345555555444 4454444432 3321 222334444443
Q ss_pred CCCcHHHHHHHHHHHHH
Q 003253 736 DGYSGSDLKNLCVTAAH 752 (836)
Q Consensus 736 ~G~sg~DL~~L~~~A~~ 752 (836)
-..+.++|.++++.++.
T Consensus 222 ~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 222 WPGNIRELKNVVERSVY 238 (265)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34466778888777664
No 98
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=4.7e-13 Score=144.97 Aligned_cols=183 Identities=24% Similarity=0.311 Sum_probs=127.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CCcceeecccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSSI 605 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~-----~~~i~v~~s~l 605 (836)
.+|++++|++.+++.|...+.. + .. .++||+||||+|||++|+++++.+. .+++.+++++.
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKT----------G---SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHH----------T---CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCHHHhhCCHHHHHHHHHHHHc----------C---CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 5689999999999999988762 1 22 3599999999999999999999873 23566666543
Q ss_pred chhcccccHHHHHHHHHH-HH-----hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEe
Q 003253 606 TSKWFGEGEKYVKAVFSL-AS-----KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 679 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~-A~-----~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIa 679 (836)
.+. ..++..+.. +. ...+.||+|||+|.+ ....+ +.++..++.. ...+.+|+
T Consensus 88 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l-----~~~~~-------~~L~~~le~~----~~~~~~i~ 145 (327)
T 1iqp_A 88 RGI------NVIREKVKEFARTKPIGGASFKIIFLDEADAL-----TQDAQ-------QALRRTMEMF----SSNVRFIL 145 (327)
T ss_dssp HHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS-----CHHHH-------HHHHHHHHHT----TTTEEEEE
T ss_pred Cch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC-----CHHHH-------HHHHHHHHhc----CCCCeEEE
Confidence 211 111221111 11 134789999999988 22222 2233333321 24577888
Q ss_pred ccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 680 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 680 TTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
+||.+..+.+.+.+|+. .+.+++|+.++...+++..+...++. ++..+..++..+.| +.+.+.++++.++
T Consensus 146 ~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 146 SCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 89999999999999995 78999999999999999998876654 44557778888766 5555666666555
No 99
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.44 E-value=8.3e-14 Score=151.15 Aligned_cols=191 Identities=16% Similarity=0.228 Sum_probs=118.8
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh---
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 608 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~--- 608 (836)
+++|.....+.+.+.+... .....+|||+||||||||++|++++..+ +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV------------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH------------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 4677777777777766531 1223579999999999999999999976 679999999876332
Q ss_pred --cccccH----H---HHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCc-------ccCc
Q 003253 609 --WFGEGE----K---YVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDT 672 (836)
Q Consensus 609 --~~g~~e----~---~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~-------~~~~ 672 (836)
.+|... . .....|..|. .++||||||+.+ +...+. .++..++... ....
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-----~~~~q~-------~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-----SPLMQV-------RLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-----CHHHHH-------HHHHHHHSSBCCBTTBCCCCB
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-----CHHHHH-------HHHHHHhcCEeeecCCccccc
Confidence 222211 0 1123455544 489999999988 222222 2333332211 1123
Q ss_pred ccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHHHH----HHHHHHHHhh----CCCC----CcccHHHHHH
Q 003253 673 ERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPNR----AKILQVILAK----EDLS----PDVDFDAIAN 733 (836)
Q Consensus 673 ~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~eR----~~Il~~~l~~----~~l~----~d~dl~~LA~ 733 (836)
.++.||+|||.. ..+.+.+..||. .+.+..|+..+| ..+++.++.. .+.. .+..+..|..
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 568899999975 346788888984 556556665544 4466665543 2211 2333555666
Q ss_pred HcCCCcHHHHHHHHHHHHHH
Q 003253 734 MTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 734 ~t~G~sg~DL~~L~~~A~~~ 753 (836)
..-..+.++|.++++.|+..
T Consensus 215 ~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 55345678888888887754
No 100
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=2.5e-12 Score=141.53 Aligned_cols=186 Identities=15% Similarity=0.203 Sum_probs=123.5
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCC--------------
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 596 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~-------------- 596 (836)
.+|++++|++.+.+.++..+.. . .+.++ ++|+||+|+|||++++++|+++..+
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~---------~---~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQ---------P---RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTC---------T---TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred CCHHHhcCCHHHHHHHHHHHhh---------C---CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 5799999999999888876521 1 12234 9999999999999999999975211
Q ss_pred ---------------cceeeccccchhcccc-cHHHHHHHHHHHH--------------hcCCceEEEccchhhhcCCCC
Q 003253 597 ---------------FINISMSSITSKWFGE-GEKYVKAVFSLAS--------------KIAPSVIFVDEVDSMLGRREN 646 (836)
Q Consensus 597 ---------------~i~v~~s~l~s~~~g~-~e~~i~~lf~~A~--------------~~~psIL~IDEID~L~~~r~~ 646 (836)
++.++... .+. ....++..+..+. ...|.||+|||++.+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-----~ 147 (354)
T 1sxj_E 78 ASNRKLELNVVSSPYHLEITPSD-----MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-----T 147 (354)
T ss_dssp --------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-----C
T ss_pred cccccceeeeecccceEEecHhh-----cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-----C
Confidence 11111111 011 1112444444332 225679999999986 2
Q ss_pred CchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-C-
Q 003253 647 PGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-P- 724 (836)
Q Consensus 647 ~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~- 724 (836)
...+ +.++..+... ..++.+|.+|+.+..+.+.+++|+ ..+.|++|+.+++.++++..+.+.++. +
T Consensus 148 ~~~~-------~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 148 KDAQ-------AALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp HHHH-------HHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred HHHH-------HHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 2222 2233333322 134677888899999999999999 789999999999999999998877654 4
Q ss_pred cccHHHHHHHcCCCcHHHHHHHHHHHHH
Q 003253 725 DVDFDAIANMTDGYSGSDLKNLCVTAAH 752 (836)
Q Consensus 725 d~dl~~LA~~t~G~sg~DL~~L~~~A~~ 752 (836)
+..+..++..+.| +.+++.++++.++.
T Consensus 216 ~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 216 KDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp SHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 5567888888876 55556566655544
No 101
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=5.5e-14 Score=165.93 Aligned_cols=173 Identities=20% Similarity=0.280 Sum_probs=101.7
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCccee----eccccchhcc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI----SMSSITSKWF 610 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v----~~s~l~s~~~ 610 (836)
.++|++.+++.+...+..... ..... ...+...++||+||||||||++|+++|+.++..++.. ++..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~--~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVP--KVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCC--EETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred hhcChHHHHHHHHHHHhCCCc--ccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 478888888777543332110 00000 0112234899999999999999999999987554432 2233222111
Q ss_pred -----cccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhc--CCcccCcccEEEEeccCC
Q 003253 611 -----GEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDTERILVLAATNR 683 (836)
Q Consensus 611 -----g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld--~~~~~~~~~vlVIaTTn~ 683 (836)
|... .....+..| ..+||||||||.+ ++..+..+..++++-...+. +.....+.++.||||||.
T Consensus 373 ~~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l-----~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp 443 (595)
T 3f9v_A 373 REKGTGEYY-LEAGALVLA---DGGIAVIDEIDKM-----RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNP 443 (595)
T ss_dssp SGGGTSSCS-EEECHHHHH---SSSEECCTTTTCC-----CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECC
T ss_pred ecccccccc-ccCCeeEec---CCCcEEeehhhhC-----CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCC
Confidence 1100 001123333 3489999999988 33333333333332111111 222223467899999999
Q ss_pred CC-------------CCcHHHHhhccc-cccCCCCCHHHHHHHHHHHHhhC
Q 003253 684 PF-------------DLDEAVIRRLPR-RLMVNLPDAPNRAKILQVILAKE 720 (836)
Q Consensus 684 ~~-------------~Ld~~l~rRf~~-~I~v~~P~~~eR~~Il~~~l~~~ 720 (836)
+. .+++++++||+. .+..+.|+.+ ...|+++++...
T Consensus 444 ~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 444 KFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp TTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred cCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 86 899999999975 4455677777 888888877643
No 102
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.37 E-value=2.4e-13 Score=156.75 Aligned_cols=160 Identities=17% Similarity=0.169 Sum_probs=93.4
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CCcceeecc-----ccch
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-----SITS 607 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~--~~~i~v~~s-----~l~s 607 (836)
.++|.+.+++.+...+.. ..++||+||||||||++|+++|..++ .+|..+.+. ++.+
T Consensus 23 ~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 367888888777665541 14899999999999999999999884 344444442 2222
Q ss_pred hcccccHHHHHHHHHHHHhc---CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 608 KWFGEGEKYVKAVFSLASKI---APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 608 ~~~g~~e~~i~~lf~~A~~~---~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
.+.+.... -...|..+.+. .++|||||||+.+ ++..+..+..++++....+.+.....+.++ +|+|||.+
T Consensus 87 ~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~-----~~~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI~ATN~l 159 (500)
T 3nbx_X 87 PLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERQFRNGAHVEKIPMRL-LVAASNEL 159 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGC-----CHHHHHHHHHHHHSSEEECSSSEEECCCCE-EEEEESSC
T ss_pred cccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhh-----cHHHHHHHHHHHHHHhccCCCCcCCcchhh-hhhccccC
Confidence 22111111 11223222221 4679999999876 333333333333222112223322223344 56667753
Q ss_pred C---CCcHHHHhhccccccCCCCCH-HHHHHHHHHHH
Q 003253 685 F---DLDEAVIRRLPRRLMVNLPDA-PNRAKILQVIL 717 (836)
Q Consensus 685 ~---~Ld~~l~rRf~~~I~v~~P~~-~eR~~Il~~~l 717 (836)
. .+.+++++||...+.++.|+. +++..|++...
T Consensus 160 pe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 160 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 2 255799999988899999987 77888887654
No 103
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=3.1e-11 Score=132.54 Aligned_cols=170 Identities=22% Similarity=0.295 Sum_probs=115.8
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----Ccceeecccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSI 605 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~-----~~i~v~~s~l 605 (836)
.+|++++|++.+.+.|...+.. + .. .++||+||||||||++|+++|+.+.. .+..+++++.
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~----------g---~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE----------G---KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT----------T---CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred CcHHHhcCcHHHHHHHHHHHhc----------C---CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 4789999999999999888762 1 22 24999999999999999999998733 2444554432
Q ss_pred chhcccccHHHHHHHHHHHHh------cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEe
Q 003253 606 TSKWFGEGEKYVKAVFSLASK------IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLA 679 (836)
Q Consensus 606 ~s~~~g~~e~~i~~lf~~A~~------~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIa 679 (836)
. + ...++..+..... ..+.|++|||+|.+ ....+.. ++..++.. ...+.+|.
T Consensus 88 ~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l-----~~~~~~~-------L~~~le~~----~~~~~~il 145 (340)
T 1sxj_C 88 R----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAM-----TNAAQNA-------LRRVIERY----TKNTRFCV 145 (340)
T ss_dssp C----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGS-----CHHHHHH-------HHHHHHHT----TTTEEEEE
T ss_pred c----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCC-----CHHHHHH-------HHHHHhcC----CCCeEEEE
Confidence 1 1 1233333322221 13689999999988 2222222 33333322 23456777
Q ss_pred ccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCC-CcccHHHHHHHcCC
Q 003253 680 ATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLS-PDVDFDAIANMTDG 737 (836)
Q Consensus 680 TTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~-~d~dl~~LA~~t~G 737 (836)
+||.+..+.+.+.+|+. .+.+..++.++..+++...+...++. ++.....++..+.|
T Consensus 146 ~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 146 LANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp EESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred EecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88999999999999994 78999999999999999988665543 34445667776655
No 104
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.31 E-value=1.9e-12 Score=124.74 Aligned_cols=131 Identities=8% Similarity=0.121 Sum_probs=85.6
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhccc
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG 611 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g 611 (836)
+++|.....+.+.+.+... .....+|||+||||||||++|+++++.+ +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 4567777777777666421 1223579999999999999999999987 78999 999886543
Q ss_pred ccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-------
Q 003253 612 EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP------- 684 (836)
Q Consensus 612 ~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~------- 684 (836)
......|..+. .++|||||||.+ +...+. .++..+.. ...++.+|+|||.+
T Consensus 66 ---~~~~~~~~~a~---~g~l~ldei~~l-----~~~~q~-------~Ll~~l~~----~~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 ---PQLNDFIALAQ---GGTLVLSHPEHL-----TREQQY-------HLVQLQSQ----EHRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp ---SCHHHHHHHHT---TSCEEEECGGGS-----CHHHHH-------HHHHHHHS----SSCSSCEEEEESSCHHHHHHH
T ss_pred ---hhhhcHHHHcC---CcEEEEcChHHC-----CHHHHH-------HHHHHHhh----cCCCEEEEEECCcCHHHHHHc
Confidence 22444566554 489999999988 322222 22333322 22457788888864
Q ss_pred CCCcHHHHhhccccccCCCC
Q 003253 685 FDLDEAVIRRLPRRLMVNLP 704 (836)
Q Consensus 685 ~~Ld~~l~rRf~~~I~v~~P 704 (836)
..+.+.+..|+. .+.+..|
T Consensus 124 ~~~~~~L~~rl~-~~~i~lP 142 (145)
T 3n70_A 124 NHIIAELYYCFA-MTQIACL 142 (145)
T ss_dssp SCCCHHHHHHHH-HHEEECC
T ss_pred CCCCHHHHHHhc-CCEEeCC
Confidence 356778888774 3344444
No 105
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.28 E-value=9.1e-13 Score=126.75 Aligned_cols=131 Identities=12% Similarity=0.151 Sum_probs=84.0
Q ss_pred hhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccH
Q 003253 535 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGE 614 (836)
Q Consensus 535 di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e 614 (836)
+++|.+...+.+.+.+.... ....+|||+||||||||++|++++..++ +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----
Confidence 46777777777777765211 1225799999999999999999999888 99999998865443
Q ss_pred HHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-CC----CcH
Q 003253 615 KYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-FD----LDE 689 (836)
Q Consensus 615 ~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-~~----Ld~ 689 (836)
...+|..+. .++|||||||.+ +...+..+.++ ++.. ...++.+|+|||.+ .. +++
T Consensus 67 --~~~~~~~a~---~~~l~lDei~~l-----~~~~q~~Ll~~-------l~~~---~~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 67 --PMELLQKAE---GGVLYVGDIAQY-----SRNIQTGITFI-------IGKA---ERCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp --HHHHHHHTT---TSEEEEEECTTC-----CHHHHHHHHHH-------HHHH---TTTTCEEEEEEEECTTTC--CHHH
T ss_pred --hhhHHHhCC---CCeEEEeChHHC-----CHHHHHHHHHH-------HHhC---CCCCEEEEEecCCCHHHHHhCccH
Confidence 455566554 489999999988 32223222222 2211 12457788888754 33 445
Q ss_pred HHHhhccccccCCCC
Q 003253 690 AVIRRLPRRLMVNLP 704 (836)
Q Consensus 690 ~l~rRf~~~I~v~~P 704 (836)
.+..||. .+.+..|
T Consensus 127 ~L~~rl~-~~~i~lP 140 (143)
T 3co5_A 127 KLAGLFS-ESVVRIP 140 (143)
T ss_dssp HHHHHSS-SEEEEEC
T ss_pred HHHHHhc-CcEEeCC
Confidence 6666763 3344444
No 106
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.25 E-value=9.7e-11 Score=128.55 Aligned_cols=178 Identities=15% Similarity=0.082 Sum_probs=118.0
Q ss_pred hchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcce--eec------------
Q 003253 537 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN--ISM------------ 602 (836)
Q Consensus 537 ~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~--v~~------------ 602 (836)
..++...+.|...+.. .+.++.+||+||+|+|||++|+++|+.+...... ..|
T Consensus 5 pw~~~~~~~l~~~i~~-------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~ 71 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQA-------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAG 71 (334)
T ss_dssp GGGHHHHHHHHHHHHT-------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHc-------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 3456667777776652 2344679999999999999999999998643211 000
Q ss_pred --cccchhc-----ccccHHHHHHHHHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccC
Q 003253 603 --SSITSKW-----FGEGEKYVKAVFSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD 671 (836)
Q Consensus 603 --s~l~s~~-----~g~~e~~i~~lf~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~ 671 (836)
.++..-. .......++.+++.+... .+.|++|||+|.|. . ...+.|+..++. +
T Consensus 72 ~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~-----~-------~a~naLLk~lEe----p 135 (334)
T 1a5t_A 72 THPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT-----D-------AAANALLKTLEE----P 135 (334)
T ss_dssp CCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC-----H-------HHHHHHHHHHTS----C
T ss_pred CCCCEEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC-----H-------HHHHHHHHHhcC----C
Confidence 1111000 011234567777766543 35799999999982 1 223445555543 2
Q ss_pred cccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 003253 672 TERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVT 749 (836)
Q Consensus 672 ~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~ 749 (836)
+.++++|.+|+.++.+.+.+++|+ ..+.|+.|+.++..++++..+ . .++..+..++..+.|. .+.+.++++.
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~---~-~~~~~~~~l~~~s~G~-~r~a~~~l~~ 207 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV---T-MSQDALLAALRLSAGS-PGAALALFQG 207 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC---C-CCHHHHHHHHHHTTTC-HHHHHHTTSS
T ss_pred CCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc---C-CCHHHHHHHHHHcCCC-HHHHHHHhcc
Confidence 356788888899999999999999 579999999999999988765 2 2345567788888774 4444444443
No 107
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.23 E-value=1.9e-12 Score=146.40 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=64.7
Q ss_pred CCCcccccccccc-ccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeE
Q 003253 17 LDGTNLQESFENF-PYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKL 95 (836)
Q Consensus 17 ~~~~~~~~~~~~f-py~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~l 95 (836)
.+|++|.-.|+++ -+. ++.|..|..+++-|.+++.+.... .....+++|||+||||| ++++||||||+.+++++
T Consensus 4 ~tP~~i~~~Ld~~IvGq--e~ak~~l~~av~~~~~r~~~~~~~-~~~~~~~~iLl~GppGt--GKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 4 MTPREIVSELDQHIIGQ--ADAKRAVAIALRNRWRRMQLQEPL-RHEVTPKNILMIGPTGV--GKTEIARRLAKLANAPF 78 (444)
T ss_dssp CCHHHHHHHHHTTCCSC--HHHHHHHHHHHHHHHHHHHSCTTT-TTTCCCCCEEEECCTTS--SHHHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhhhcccccc-ccccCCceEEEEcCCCC--CHHHHHHHHHHHcCCCc
Confidence 3556666666643 556 999999999999998887664321 11234678999999999 99999999999999999
Q ss_pred EEEeccccCC
Q 003253 96 LIFDSHSLLG 105 (836)
Q Consensus 96 l~~d~~~~~~ 105 (836)
+.+|.+.+..
T Consensus 79 ~~v~~~~~~~ 88 (444)
T 1g41_A 79 IKVEATKFTE 88 (444)
T ss_dssp EEEEGGGGC-
T ss_pred eeecchhhcc
Confidence 9999765544
No 108
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.16 E-value=5.6e-11 Score=128.14 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=64.1
Q ss_pred CCeEEEEcCchhhhc------cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCC
Q 003253 290 CPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFP 363 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~------~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~ 363 (836)
.+.||||||+|.+.. ...+..+.|...|+....+++||+++|..+. +.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~-----------------------~~--- 183 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRM-----------------------EN--- 183 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHH-----------------------HH---
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHH-----------------------HH---
Confidence 467999999998653 2456667777888887789999999986531 00
Q ss_pred CccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 364 DSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 364 rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
...++.+|.+||+..|.|+.|+.+++..||+..+.+
T Consensus 184 ------------~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 184 ------------FFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp ------------HHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred ------------HHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 012345688899999999999999999999977754
No 109
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.15 E-value=7.6e-11 Score=139.63 Aligned_cols=222 Identities=18% Similarity=0.233 Sum_probs=130.2
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCc---ceeeccccc-
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---INISMSSIT- 606 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~---i~v~~s~l~- 606 (836)
..|++++|++.+.+.+...+.. + .+++|+||||||||++|++||..+.... +.+.+....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~-----------g-----~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~ 101 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQ-----------K-----RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE 101 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHT-----------T-----CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT
T ss_pred cccceEECchhhHhhccccccC-----------C-----CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc
Confidence 5789999999999888877752 1 4799999999999999999999884332 111110000
Q ss_pred -hh------------------------------------------------------cccccHHHHHHHHH---------
Q 003253 607 -SK------------------------------------------------------WFGEGEKYVKAVFS--------- 622 (836)
Q Consensus 607 -s~------------------------------------------------------~~g~~e~~i~~lf~--------- 622 (836)
.. .+.........+|.
T Consensus 102 ~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~ 181 (604)
T 3k1j_A 102 NMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQS 181 (604)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC--
T ss_pred cCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhc
Confidence 00 00000000111111
Q ss_pred --------------HHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCC----------cccCcccEEEE
Q 003253 623 --------------LASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----------RTKDTERILVL 678 (836)
Q Consensus 623 --------------~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~----------~~~~~~~vlVI 678 (836)
.+....+++|||||++.+ ++..+..+.+++++-...+.+. ....+.++.||
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI 256 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLV 256 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEE
T ss_pred CCccccccccccCceeeecCCCEEEEechhhC-----CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEE
Confidence 112235579999999988 4444444444444322222221 11223578899
Q ss_pred eccCCC--CCCcHHHHhhcc---ccccCCCC---CHHHHHHHHHHHHhhCC-----CC-CcccHHHHHHHc---CCC---
Q 003253 679 AATNRP--FDLDEAVIRRLP---RRLMVNLP---DAPNRAKILQVILAKED-----LS-PDVDFDAIANMT---DGY--- 738 (836)
Q Consensus 679 aTTn~~--~~Ld~~l~rRf~---~~I~v~~P---~~~eR~~Il~~~l~~~~-----l~-~d~dl~~LA~~t---~G~--- 738 (836)
+|||.. ..+++++++||. ..+.++.. ..+....+++.+..... .. .+..+..|.... .|.
T Consensus 257 ~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~ 336 (604)
T 3k1j_A 257 AAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGH 336 (604)
T ss_dssp EEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTE
T ss_pred EecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccc
Confidence 999976 679999999995 34444321 34556666655443211 11 233345554433 443
Q ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccHHHHHHHHHH
Q 003253 739 ---SGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIRPLNMDDFKYAHER 799 (836)
Q Consensus 739 ---sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~lt~eDf~~Al~~ 799 (836)
+.+++.++++.|...|..+ ....|+.+|+.+|+..
T Consensus 337 l~~~~R~l~~llr~A~~~A~~~--------------------------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 337 LTLRLRDLGGIVRAAGDIAVKK--------------------------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp EECCHHHHHHHHHHHHHHHHHT--------------------------TCSSBCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhc--------------------------CcccccHHHHHHHHHh
Confidence 6889999998876554221 1235899999999964
No 110
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.14 E-value=6.5e-10 Score=124.26 Aligned_cols=206 Identities=15% Similarity=0.079 Sum_probs=126.4
Q ss_pred chhhhchHHHHHHHHHHH-hccccChhhhhcCCCCCCCceEEE--EcCCCChHHHHHHHHHHHh---------CCCccee
Q 003253 533 FDDIGALENVKDTLKELV-MLPLQRPELFCKGQLTKPCKGILL--FGPPGTGKTMLAKAVATEA---------GANFINI 600 (836)
Q Consensus 533 ~~di~G~~~vk~~L~~~v-~~~l~~~e~~~~~~~~~p~~~vLL--~GPpGtGKT~LA~alA~~l---------~~~~i~v 600 (836)
.++++|.+...+.|.+.+ ..... +....+..++| +||+|+|||+|++++++.+ +..++.+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 356888888888887776 42111 10123367999 9999999999999999876 4567788
Q ss_pred eccccc------hh---cc-------ccc-HHHHHHHHHHHH-hcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHH
Q 003253 601 SMSSIT------SK---WF-------GEG-EKYVKAVFSLAS-KIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 662 (836)
Q Consensus 601 ~~s~l~------s~---~~-------g~~-e~~i~~lf~~A~-~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~ 662 (836)
+|.... .. .+ +.. ......+..... ...|.||+|||++.+..... .... .+..++.
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~----~l~~l~~ 166 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAE----DLYTLLR 166 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHH----HHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchH----HHHHHHH
Confidence 764321 00 00 111 122233333322 24578999999999853210 1122 2222333
Q ss_pred HhcCCcccCc--ccEEEEeccCCCC---CCc---HHHHhhccccccCCCCCHHHHHHHHHHHHhhCC---CCCcccHHHH
Q 003253 663 NWDGLRTKDT--ERILVLAATNRPF---DLD---EAVIRRLPRRLMVNLPDAPNRAKILQVILAKED---LSPDVDFDAI 731 (836)
Q Consensus 663 ~ld~~~~~~~--~~vlVIaTTn~~~---~Ld---~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~---l~~d~dl~~L 731 (836)
.+.... ... .++.+|++|+.+. .++ +.+.++|...+.+++++.++..++++..+.... ...+..+..+
T Consensus 167 ~~~~~~-~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i 245 (412)
T 1w5s_A 167 VHEEIP-SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 245 (412)
T ss_dssp HHHHSC-CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHHhcc-cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 332221 112 5788888887654 234 566677766699999999999999988765321 1234456778
Q ss_pred HHHcC------CCcHHHHHHHHHHHHHHH
Q 003253 732 ANMTD------GYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 732 A~~t~------G~sg~DL~~L~~~A~~~a 754 (836)
+..+. | .+..+..++..|...+
T Consensus 246 ~~~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 246 SDVYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 88887 6 5667778887776544
No 111
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.14 E-value=1.1e-10 Score=102.98 Aligned_cols=87 Identities=20% Similarity=0.350 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 003253 705 DAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCAD 784 (836)
Q Consensus 705 ~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 784 (836)
+.++|.+||+.++++.++..++|++.||..|+||||+||.++|++|++.++++ .
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~--------------------------~ 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA--------------------------R 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH--------------------------S
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh--------------------------c
Confidence 56899999999999998888999999999999999999999999999999986 1
Q ss_pred CccccHHHHHHHHHHhccCccccccchhhHHHHH
Q 003253 785 IRPLNMDDFKYAHERVCASVSSESVNMSELLQWN 818 (836)
Q Consensus 785 ~~~lt~eDf~~Al~~v~pS~~~~~~~~~~~~~W~ 818 (836)
..+|+++||..|++++.++.......+ .+..||
T Consensus 56 ~~~i~~~df~~Al~~v~~~~~~~~~~~-~y~~w~ 88 (88)
T 3vlf_B 56 RKVATEKDFLKAVDKVISGYKKFSSTS-RYMQYN 88 (88)
T ss_dssp CSSBCHHHHHHHHHHHTC----------------
T ss_pred cccCCHHHHHHHHHHHhcCcccccchh-HHhccC
Confidence 246999999999999999988775433 455786
No 112
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=7.1e-10 Score=120.23 Aligned_cols=142 Identities=13% Similarity=0.167 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCCcceeeccccchhccc
Q 003253 538 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSITSKWFG 611 (836)
Q Consensus 538 G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l------~~~~i~v~~s~l~s~~~g 611 (836)
|++++.+.|+..+.. + + .+++||+||||+|||++|+++|+.+ ...++.++++. . .
T Consensus 1 g~~~~~~~L~~~i~~----------~---~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEK----------S---E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--N 61 (305)
T ss_dssp ---CHHHHHHHHHHT----------C---S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--C
T ss_pred ChHHHHHHHHHHHHC----------C---C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--C
Confidence 456677777777752 1 2 3689999999999999999999874 23455555431 0 1
Q ss_pred ccHHHHHHHHHHHHhcC----CceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCC
Q 003253 612 EGEKYVKAVFSLASKIA----PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDL 687 (836)
Q Consensus 612 ~~e~~i~~lf~~A~~~~----psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~L 687 (836)
..-..++.+.+.+...+ ..|+||||+|.| +. ...+.|+..++. ++..+++|.+|+.+..+
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~l-----t~-------~a~naLLk~LEe----p~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERM-----TQ-------QAANAFLKALEE----PPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB-----CH-------HHHHHTHHHHHS----CCTTEEEEEEESCGGGS
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHh-----CH-------HHHHHHHHHHhC----CCCCeEEEEEECChHhC
Confidence 22345778888876543 369999999998 21 123445555543 23567777778888999
Q ss_pred cHHHHhhccccccCCCCCHHHHHHHHHHHH
Q 003253 688 DEAVIRRLPRRLMVNLPDAPNRAKILQVIL 717 (836)
Q Consensus 688 d~~l~rRf~~~I~v~~P~~~eR~~Il~~~l 717 (836)
.+++++| ++.|++|+.++..++++..+
T Consensus 126 ~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999999 79999999999999998876
No 113
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.09 E-value=1.4e-10 Score=148.74 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=106.1
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccC----------hhhhhc------CCC---------CCCCce--EEEEcCCCC
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQR----------PELFCK------GQL---------TKPCKG--ILLFGPPGT 580 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~----------~e~~~~------~~~---------~~p~~~--vLL~GPpGt 580 (836)
...++|++++|++++|+.+.+.+.+|+.. ++.+.. .+. ..+|++ +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 44689999999999999999999999844 445544 111 123344 999999999
Q ss_pred hHHHHHHHHHHHh---CCCcceeeccccc------------hhcccc----cHHHHHHHHHHHHhcCCceEEEccchhhh
Q 003253 581 GKTMLAKAVATEA---GANFINISMSSIT------------SKWFGE----GEKYVKAVFSLASKIAPSVIFVDEVDSML 641 (836)
Q Consensus 581 GKT~LA~alA~~l---~~~~i~v~~s~l~------------s~~~g~----~e~~i~~lf~~A~~~~psIL~IDEID~L~ 641 (836)
|||+||+++|.+. |-|.+.++..+.. ++|+++ +|+.++.+|..|+...|++||+|+++.|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999877 4555555554432 567777 89999999999999999999999999998
Q ss_pred cCCC-----CCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC
Q 003253 642 GRRE-----NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR 683 (836)
Q Consensus 642 ~~r~-----~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~ 683 (836)
+.+. .........+++++++..+++.... .+|+|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eecc
Confidence 7732 1111245567788899988886433 567777 6665
No 114
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.08 E-value=5.6e-09 Score=139.40 Aligned_cols=70 Identities=23% Similarity=0.332 Sum_probs=52.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHH-hcCCceEEEccch
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLAS-KIAPSVIFVDEVD 638 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~-~~~psIL~IDEID 638 (836)
.|..++||.|++||||++|+|..|...++.++.+..+.-.+ ..+-..-++.++..|. +..|.|++++|-+
T Consensus 1607 ~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1607 QVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN--LSDFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp SSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC--HHHHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC--HHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 46679999999999999999999999999998887654221 1122345788887774 5567788887654
No 115
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.08 E-value=1.6e-10 Score=101.45 Aligned_cols=78 Identities=24% Similarity=0.424 Sum_probs=70.9
Q ss_pred cCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 003253 700 MVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPAL 779 (836)
Q Consensus 700 ~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~ 779 (836)
+-.+|+.++|.+||+.++++..+..+++++.||..|+||||+||.++|++|++.++++.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--------------------- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--------------------- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT---------------------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc---------------------
Confidence 45789999999999999999888889999999999999999999999999999998861
Q ss_pred CCCCCCccccHHHHHHHHHHhccC
Q 003253 780 SGCADIRPLNMDDFKYAHERVCAS 803 (836)
Q Consensus 780 ~~~~~~~~lt~eDf~~Al~~v~pS 803 (836)
..+|+++||..|++++.|.
T Consensus 66 -----~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 -----RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp -----CSEECHHHHHHHHHHHHCC
T ss_pred -----CCCCCHHHHHHHHHHHccC
Confidence 2579999999999999774
No 116
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.07 E-value=2.8e-10 Score=97.95 Aligned_cols=75 Identities=25% Similarity=0.455 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 003253 702 NLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSG 781 (836)
Q Consensus 702 ~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~ 781 (836)
|+|+.++|.+||+.++++..+..++++..||..|+||||+||.++|++|++.++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~------------------------ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE------------------------ 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------------------------
Confidence 68999999999999999988888999999999999999999999999999999885
Q ss_pred CCCCccccHHHHHHHHHHhcc
Q 003253 782 CADIRPLNMDDFKYAHERVCA 802 (836)
Q Consensus 782 ~~~~~~lt~eDf~~Al~~v~p 802 (836)
...+|+++||..|++++..
T Consensus 57 --~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 57 --RRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp --TCSEECHHHHHHHHHHHHC
T ss_pred --CCCCCCHHHHHHHHHHHHh
Confidence 2357999999999999854
No 117
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.01 E-value=5.7e-10 Score=125.00 Aligned_cols=175 Identities=21% Similarity=0.264 Sum_probs=107.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch-----hcccccHH-------HHHHHHHHHHhcCCceEEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-----KWFGEGEK-------YVKAVFSLASKIAPSVIFV 634 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s-----~~~g~~e~-------~i~~lf~~A~~~~psIL~I 634 (836)
..+||+|++||||+++|++++... +.+|+.++|+.+.. ..+|...+ .....|+.|.. ++|||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfl 237 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADG---GTLFL 237 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCC---cEEEE
Confidence 468999999999999999999887 47899999987532 22222111 11235555554 89999
Q ss_pred ccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHH
Q 003253 635 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAP 707 (836)
Q Consensus 635 DEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~ 707 (836)
|||+.| +...+..+.+++++-....-|.......++.||+|||.. ..+.+.+..|+ ..+.+..|+..
T Consensus 238 dei~~l-----~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLr 311 (387)
T 1ny5_A 238 DEIGEL-----SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLR 311 (387)
T ss_dssp ESGGGC-----CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGG
T ss_pred cChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcch
Confidence 999998 444444444444432111112222223568899999973 45677888788 45666777766
Q ss_pred HHH----HHHHHHHhh----CCCC-Cccc---HHHHHHHcCCCcHHHHHHHHHHHHHH
Q 003253 708 NRA----KILQVILAK----EDLS-PDVD---FDAIANMTDGYSGSDLKNLCVTAAHR 753 (836)
Q Consensus 708 eR~----~Il~~~l~~----~~l~-~d~d---l~~LA~~t~G~sg~DL~~L~~~A~~~ 753 (836)
+|. .+++.++.+ .+.. ...+ +..|....-..+.++|+++++.|+..
T Consensus 312 eR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 312 ERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 653 345555433 2222 2233 34444444344567888888887763
No 118
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.96 E-value=8.9e-10 Score=95.90 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 003253 705 DAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCAD 784 (836)
Q Consensus 705 ~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 784 (836)
+.++|.+||+.++++.++..++++..||..|+||||+||.++|++|+..++++ .
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~--------------------------~ 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE--------------------------N 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTS--------------------------C
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------------------------c
Confidence 67899999999999988888999999999999999999999999999998875 1
Q ss_pred CccccHHHHHHHHHHhccCcc
Q 003253 785 IRPLNMDDFKYAHERVCASVS 805 (836)
Q Consensus 785 ~~~lt~eDf~~Al~~v~pS~~ 805 (836)
..+|+++||..|++++.|+++
T Consensus 56 ~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CSSBCHHHHHHHHHHHCC---
T ss_pred cCCcCHHHHHHHHHHHccCch
Confidence 257999999999999999987
No 119
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.89 E-value=3.3e-09 Score=121.79 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=59.8
Q ss_pred HHHHHHHHhhccCCCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchh
Q 003253 276 INTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQT 355 (836)
Q Consensus 276 i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~ 355 (836)
+..+|+.+.. .+|.||||| +..+..+.|++.|+ .|.+.|||+||.+++++
T Consensus 256 ~~~~~~~~~~---~~~~iLfiD-------~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~------------------ 305 (468)
T 3pxg_A 256 LKKVMDEIRQ---AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDEYRK------------------ 305 (468)
T ss_dssp HHHHHHHHHT---CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTTTHH------------------
T ss_pred HHHHHHHHHh---cCCeEEEEe-------CchhHHHHHHHhhc--CCCEEEEecCCHHHHHH------------------
Confidence 4556666666 789999999 56777787887775 48999999999887421
Q ss_pred hhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 356 ALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 356 ~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
..+++.++.+|| +.|.|.+|+.+++..||+..+.+
T Consensus 306 --------------------~~~~~~al~~Rf-~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 306 --------------------YIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp --------------------HHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTT
T ss_pred --------------------HhhcCHHHHHhC-ccceeCCCCHHHHHHHHHHHHHH
Confidence 123466788899 58999999999999999966543
No 120
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.88 E-value=3.5e-09 Score=113.56 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=61.3
Q ss_pred CCccccccccc-cccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEE
Q 003253 18 DGTNLQESFEN-FPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLL 96 (836)
Q Consensus 18 ~~~~~~~~~~~-fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll 96 (836)
+++++.-.|++ +.+. ++.+..|..++.-|+++..+..-.+ -...++.|||+||||| ++++|||++|+.++.+++
T Consensus 5 ~~~~l~~~l~~~i~G~--~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~Gt--GKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 5 TPREIVSELDQHIIGQ--ADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGV--GKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CHHHHHHHHHTTCCSC--HHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTTS--SHHHHHHHHHHHHTCCEE
T ss_pred CHHHHHHHHhhhcCCh--HHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCCC--CHHHHHHHHHHHhCCCEE
Confidence 44555555555 4555 8888888888888776655532111 1235678999999999 999999999999999999
Q ss_pred EEeccccCC
Q 003253 97 IFDSHSLLG 105 (836)
Q Consensus 97 ~~d~~~~~~ 105 (836)
.++.+.+..
T Consensus 80 ~i~~~~~~~ 88 (310)
T 1ofh_A 80 KVEATKFTE 88 (310)
T ss_dssp EEEGGGGSS
T ss_pred EEcchhccc
Confidence 999766644
No 121
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.88 E-value=2.6e-09 Score=105.16 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhc-----cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA-----GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLF 347 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~-----~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~ 347 (836)
...++.+++.+.. ...|+||||||+|.+.. +..++.+.+...++. +++.+|+++|..+...
T Consensus 100 ~~~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~---------- 165 (195)
T 1jbk_A 100 EERLKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQ---------- 165 (195)
T ss_dssp HHHHHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHH----------
T ss_pred HHHHHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHH----------
Confidence 4445556654433 26799999999999653 246778888877754 6888999988764100
Q ss_pred cccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHH
Q 003253 348 TKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASW 405 (836)
Q Consensus 348 ~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Il 405 (836)
..+++.++.+||. .|.+.+|+.++|.+||
T Consensus 166 ----------------------------~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 ----------------------------YIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ----------------------------HTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred ----------------------------HHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 0123567888996 7999999999998876
No 122
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.88 E-value=3.4e-09 Score=117.38 Aligned_cols=82 Identities=26% Similarity=0.404 Sum_probs=60.7
Q ss_pred Ccccccccccc-ccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 003253 19 GTNLQESFENF-PYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 97 (836)
Q Consensus 19 ~~~~~~~~~~f-py~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~ 97 (836)
++++.-.++++ -+. +..+..|..++..|.+..............++.|||+||||| ++++||||||+.++.+++.
T Consensus 6 ~~~l~~~l~~~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGt--GKT~la~~ia~~~~~~~~~ 81 (363)
T 3hws_A 6 PHEIRNHLDDYVIGQ--EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGS--GKTLLAETLARLLDVPFTM 81 (363)
T ss_dssp HHHHHHHHHHHCCSC--HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTS--SHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhhccCH--HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCC--CHHHHHHHHHHHcCCCEEE
Confidence 34444444443 333 788888888888777664433333445567889999999999 9999999999999999999
Q ss_pred EeccccC
Q 003253 98 FDSHSLL 104 (836)
Q Consensus 98 ~d~~~~~ 104 (836)
++.+.+.
T Consensus 82 ~~~~~l~ 88 (363)
T 3hws_A 82 ADATTLT 88 (363)
T ss_dssp EEHHHHT
T ss_pred echHHhc
Confidence 9976544
No 123
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.86 E-value=1.7e-09 Score=120.29 Aligned_cols=174 Identities=23% Similarity=0.305 Sum_probs=102.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--Ccceeeccccchh-----cccccHH-------HHHHHHHHHHhcCCceEEEc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSK-----WFGEGEK-------YVKAVFSLASKIAPSVIFVD 635 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~--~~i~v~~s~l~s~-----~~g~~e~-------~i~~lf~~A~~~~psIL~ID 635 (836)
..+|++|++||||+.+|++++...+. +|+.++|+.+... .+|...+ .-...|+.|.. ++||||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~---gtlfld 229 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQ---GTLFLD 229 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTT---SEEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCC---CeEEec
Confidence 46999999999999999999988854 3999999875322 2222111 01234555544 899999
Q ss_pred cchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC-------CCCcHHHHhhccccccCCCCCHHH
Q 003253 636 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP-------FDLDEAVIRRLPRRLMVNLPDAPN 708 (836)
Q Consensus 636 EID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~-------~~Ld~~l~rRf~~~I~v~~P~~~e 708 (836)
||+.| +...+..+.+++++-....-|.......++.+|++||.. ..+.+.+..|+ ..+.+..|...+
T Consensus 230 ei~~l-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl-~~~~i~lPpLre 303 (368)
T 3dzd_A 230 EVGEL-----DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRL-SVFQIYLPPLRE 303 (368)
T ss_dssp TGGGS-----CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH-TSEEEECCCGGG
T ss_pred ChhhC-----CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHh-CCeEEeCCChhh
Confidence 99999 444444444444332111111111122467889999863 35667888888 455555565554
Q ss_pred H----HHHHHHHHhhC----CCC-Cccc---HHHHHHHcCCCcHHHHHHHHHHHHH
Q 003253 709 R----AKILQVILAKE----DLS-PDVD---FDAIANMTDGYSGSDLKNLCVTAAH 752 (836)
Q Consensus 709 R----~~Il~~~l~~~----~l~-~d~d---l~~LA~~t~G~sg~DL~~L~~~A~~ 752 (836)
| ..+++.++.+. +.. ...+ +..|....-..+.++|+++++.|+.
T Consensus 304 R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 304 RGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp STTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 4 45556665432 211 1233 3344443333455777777777665
No 124
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.86 E-value=8.4e-09 Score=120.51 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=31.8
Q ss_pred CCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 64 VNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 64 ~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
..+.+||+||||| ++++|||+||+.++.++..++.
T Consensus 107 ~g~~vll~Gp~Gt--GKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 107 KGPILCLAGPPGV--GKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp CSCEEEEESSSSS--SHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHHhcCCCeEEEEe
Confidence 4668999999999 9999999999999999888875
No 125
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.83 E-value=1.1e-07 Score=122.31 Aligned_cols=76 Identities=28% Similarity=0.354 Sum_probs=57.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecc----------------ccchhcccccHHHHHHHHHHHHhcCCc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS----------------SITSKWFGEGEKYVKAVFSLASKIAPS 630 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s----------------~l~s~~~g~~e~~i~~lf~~A~~~~ps 630 (836)
+.|++|||+|||||+||-.++.+. |-....++.. .+.-.+....|.++..+...++..+++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 569999999999999988776443 5555555543 223234455688888889999999999
Q ss_pred eEEEccchhhhcCCC
Q 003253 631 VIFVDEVDSMLGRRE 645 (836)
Q Consensus 631 IL~IDEID~L~~~r~ 645 (836)
+|+||.+..|.++..
T Consensus 1512 ~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1512 VIVVDSVAALTPKAE 1526 (1706)
T ss_dssp EEEESCSTTCCCTTT
T ss_pred EEEEccHHhCCcccc
Confidence 999999999987653
No 126
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.82 E-value=8.4e-09 Score=137.75 Aligned_cols=139 Identities=24% Similarity=0.402 Sum_probs=92.8
Q ss_pred ceEEEEcCCCChHHHHHHHH-HHHhCCCcceeeccccchhcccccHHHHHHHHHHHH---------------hcCCceEE
Q 003253 570 KGILLFGPPGTGKTMLAKAV-ATEAGANFINISMSSITSKWFGEGEKYVKAVFSLAS---------------KIAPSVIF 633 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~al-A~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~---------------~~~psIL~ 633 (836)
+++||+||||||||++|+.+ +...+.+++.++++...+ ...+...++..- ...+.|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 68999999999999999554 444467777777765432 233444444321 11236999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCccc------CcccEEEEeccCCCC-----CCcHHHHhhccccccCC
Q 003253 634 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DTERILVLAATNRPF-----DLDEAVIRRLPRRLMVN 702 (836)
Q Consensus 634 IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~------~~~~vlVIaTTn~~~-----~Ld~~l~rRf~~~I~v~ 702 (836)
||||+.....+. +.+. ...++.+++. ..+.... .-.++.+|||||++. .++++++||| .++.++
T Consensus 1342 iDEinmp~~d~y--g~q~-~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~ 1416 (2695)
T 4akg_A 1342 CDEINLPKLDKY--GSQN-VVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLG 1416 (2695)
T ss_dssp EETTTCSCCCSS--SCCH-HHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECC
T ss_pred eccccccccccc--Cchh-HHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeC
Confidence 999985422221 2222 2334444432 2222111 114689999999984 7999999999 889999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 003253 703 LPDAPNRAKILQVILAK 719 (836)
Q Consensus 703 ~P~~~eR~~Il~~~l~~ 719 (836)
.|+.+++..|+..++..
T Consensus 1417 ~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998864
No 127
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.80 E-value=3.3e-08 Score=104.76 Aligned_cols=36 Identities=28% Similarity=0.232 Sum_probs=32.4
Q ss_pred CCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 63 TVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 63 ~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
..++.|||+||||| ++++||+|+|+..+.+++.++.
T Consensus 62 ~~~~~vLl~G~~Gt--GKT~la~~ia~~~~~~~~~i~~ 97 (272)
T 1d2n_A 62 TPLVSVLLEGPPHS--GKTALAAKIAEESNFPFIKICS 97 (272)
T ss_dssp CSEEEEEEECSTTS--SHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCeEEEEECCCCC--cHHHHHHHHHHHhCCCEEEEeC
Confidence 45678999999999 9999999999999999888875
No 128
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.78 E-value=1.1e-08 Score=101.32 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=60.0
Q ss_pred cccchhhhc----hHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCCcceee
Q 003253 530 GVTFDDIGA----LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINIS 601 (836)
Q Consensus 530 ~~~~~di~G----~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~ 601 (836)
..+|+++++ +..+.+.+++++.. .. ..+..+++|+||+|||||+|+++++..+ |..++.++
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHN----------FN-PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHS----------CC-GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHh----------cc-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 356777664 34445555555432 11 1223689999999999999999999887 67778888
Q ss_pred ccccchhcccccHH-HHHHHHHHHHhcCCceEEEccchhh
Q 003253 602 MSSITSKWFGEGEK-YVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 602 ~s~l~s~~~g~~e~-~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
+.++...+...... ....++.. -..|.+|+|||++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 75 TKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 77664432211000 00011121 226789999999844
No 129
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.76 E-value=1.1e-08 Score=115.31 Aligned_cols=153 Identities=19% Similarity=0.141 Sum_probs=90.8
Q ss_pred hhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHH-HHHhCCCccee-ecc---ccchhcc
Q 003253 536 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV-ATEAGANFINI-SMS---SITSKWF 610 (836)
Q Consensus 536 i~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~al-A~~l~~~~i~v-~~s---~l~s~~~ 610 (836)
|.|++.+|..|.-.+...... .+...+|||.|+||| ||++|+++ ++.+....+.. .++ .+.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k---------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK---------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS---------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc---------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEE
Confidence 578899988887766542211 111237999999999 99999999 66553222111 011 1111000
Q ss_pred cc-cHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC----
Q 003253 611 GE-GEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF---- 685 (836)
Q Consensus 611 g~-~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~---- 685 (836)
+. .-..-...+..|.. +|+|||||+.+ ++..+.++.+.+++-...+.|. .-+.++.||||+|...
T Consensus 285 ~~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----~~~~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~ 354 (506)
T 3f8t_A 285 EDRGWALRAGAAVLADG---GILAVDHLEGA-----PEPHRWALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWPS 354 (506)
T ss_dssp ESSSEEEEECHHHHTTT---SEEEEECCTTC-----CHHHHHHHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--CC
T ss_pred cCCCcccCCCeeEEcCC---CeeehHhhhhC-----CHHHHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccCC
Confidence 00 00000123334433 89999999988 5566677777776654455554 3457899999999865
Q ss_pred -------CCcHHHHhhccccc-cCCCCCHHH
Q 003253 686 -------DLDEAVIRRLPRRL-MVNLPDAPN 708 (836)
Q Consensus 686 -------~Ld~~l~rRf~~~I-~v~~P~~~e 708 (836)
.|++++++||+..+ .++.|+.+.
T Consensus 355 ~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 355 DPPIARIDLDQDFLSHFDLIAFLGVDPRPGE 385 (506)
T ss_dssp SCGGGGCCSCHHHHTTCSEEEETTC------
T ss_pred CCCccccCCChHHhhheeeEEEecCCCChhH
Confidence 78999999997543 446665443
No 130
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.74 E-value=2e-07 Score=101.58 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=48.2
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
+|++|-+. +..+..|..++-...+. ....+.|||+||+|| ++++||+++|+..+.++..++.
T Consensus 27 ~~~~iiG~--~~~~~~l~~~l~~~~~~----------~~~~~~vll~G~~Gt--GKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQ--ESIKKNLNVFIAAAKKR----------NECLDHILFSGPAGL--GKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHHHHHT----------TSCCCCEEEECSTTS--SHHHHHHHHHHHTTCCEEEEEG
T ss_pred CHHHhCCh--HHHHHHHHHHHHHHHhc----------CCCCCeEEEECcCCC--CHHHHHHHHHHHhCCCeEEecc
Confidence 78888777 88888777766543221 123556999999999 9999999999999998887764
No 131
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.72 E-value=1.6e-07 Score=109.08 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=57.3
Q ss_pred ccccccccccchhHHHHHHHHHHhcc-CC-cccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecc
Q 003253 24 ESFENFPYYLSENTKNVLIAASYIHL-KH-KDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSH 101 (836)
Q Consensus 24 ~~~~~fpy~l~e~tk~~l~~~~~~~l-~~-~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~ 101 (836)
.+|+++-+. +..+..|...+-... .+ ..+.+.+.+-.+..+.+||+||||| ++++||+|||++++.+++.++.+
T Consensus 36 ~~~~dliG~--~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGt--GKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 36 TNLQQVCGN--KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGI--GKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp SSGGGCCSC--HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTS--SHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCHHHhcCC--HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCC--CHHHHHHHHHHHcCCCEEEEeCC
Confidence 478888776 888888777654321 11 1222333333346789999999999 99999999999999999999987
Q ss_pred ccCC
Q 003253 102 SLLG 105 (836)
Q Consensus 102 ~~~~ 105 (836)
++.+
T Consensus 112 ~~~~ 115 (516)
T 1sxj_A 112 DVRS 115 (516)
T ss_dssp SCCC
T ss_pred Ccch
Confidence 7655
No 132
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.70 E-value=3.9e-08 Score=95.14 Aligned_cols=106 Identities=24% Similarity=0.349 Sum_probs=67.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCC
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRE 645 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~ 645 (836)
...++|+||+|+|||+|+++++..+ |..++.++..++... +....|.+|+|||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~----- 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKL----- 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCcccc-----
Confidence 3579999999999999999999988 667788887765433 11235789999999876
Q ss_pred CCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccC-CCCCCc--HHHHhhccccccCCC
Q 003253 646 NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATN-RPFDLD--EAVIRRLPRRLMVNL 703 (836)
Q Consensus 646 ~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn-~~~~Ld--~~l~rRf~~~I~v~~ 703 (836)
....+..+..+++.+.. . +..++|| ||+ .|..+. +.+.+|+..-..+.+
T Consensus 96 ~~~~~~~l~~li~~~~~-------~-g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 96 GNEEQALLFSIFNRFRN-------S-GKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp CSHHHHHHHHHHHHHHH-------H-TCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred ChHHHHHHHHHHHHHHH-------c-CCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 22223333333333221 1 1122444 555 454333 899999976555543
No 133
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.70 E-value=2.6e-08 Score=110.67 Aligned_cols=86 Identities=29% Similarity=0.381 Sum_probs=63.1
Q ss_pred cccCCCcccccccccc-ccccchhHHHHHHHHHHhccCCccccc---------------ccccccCCCCceeeecCCCch
Q 003253 14 AGILDGTNLQESFENF-PYYLSENTKNVLIAASYIHLKHKDHAK---------------YTSELTTVNPRILLSGPAGSE 77 (836)
Q Consensus 14 ~~v~~~~~~~~~~~~f-py~l~e~tk~~l~~~~~~~l~~~~~~~---------------~~~~l~~~~~~iLl~gp~g~e 77 (836)
..+-+++++.-.++++ -+. ++.|..|..+++.|+++..... -........+.|||+|||||
T Consensus 7 ~~~~~~~~l~~~L~~~viGq--~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~Gt- 83 (376)
T 1um8_A 7 SYIPAPKELKAVLDNYVIGQ--EQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGS- 83 (376)
T ss_dssp SCCCCHHHHHHHHHTTCCSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTS-
T ss_pred cCCCCHHHHHHHHhhHccCc--HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCC-
Confidence 3444555555566653 455 8999999999988877654311 00123456778999999999
Q ss_pred HHHHHHHHHHHhHhCCeEEEEecccc
Q 003253 78 IYQEMLAKALAHYFGAKLLIFDSHSL 103 (836)
Q Consensus 78 ~y~~~l~kala~~~~~~ll~~d~~~~ 103 (836)
++++|||+||+.++.++..+|.+.+
T Consensus 84 -GKT~la~~la~~l~~~~~~~~~~~~ 108 (376)
T 1um8_A 84 -GKTLMAQTLAKHLDIPIAISDATSL 108 (376)
T ss_dssp -SHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred -CHHHHHHHHHHHhCCCEEEecchhh
Confidence 9999999999999999999987554
No 134
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.70 E-value=3.7e-07 Score=100.59 Aligned_cols=68 Identities=10% Similarity=0.138 Sum_probs=49.1
Q ss_pred ccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCC--eEEEEecc
Q 003253 24 ESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA--KLLIFDSH 101 (836)
Q Consensus 24 ~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~--~ll~~d~~ 101 (836)
.+|++|-+. ++.+..|......-- .-...++.|||+||||| ++++||+|+|+.++. ++..+...
T Consensus 41 ~~~~~ivG~--~~~~~~l~~l~~~~~----------~~~~~~~~vLl~GppGt--GKT~la~~la~~l~~~~~~~~~~~~ 106 (368)
T 3uk6_A 41 QASQGMVGQ--LAARRAAGVVLEMIR----------EGKIAGRAVLIAGQPGT--GKTAIAMGMAQALGPDTPFTAIAGS 106 (368)
T ss_dssp SEETTEESC--HHHHHHHHHHHHHHH----------TTCCTTCEEEEEESTTS--SHHHHHHHHHHHHCSSCCEEEEEGG
T ss_pred cchhhccCh--HHHHHHHHHHHHHHH----------cCCCCCCEEEEECCCCC--CHHHHHHHHHHHhcccCCcccccch
Confidence 458998888 888777554332111 11122578999999999 999999999999985 78777766
Q ss_pred ccCC
Q 003253 102 SLLG 105 (836)
Q Consensus 102 ~~~~ 105 (836)
.+..
T Consensus 107 ~~~~ 110 (368)
T 3uk6_A 107 EIFS 110 (368)
T ss_dssp GGSC
T ss_pred hhhh
Confidence 6544
No 135
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.68 E-value=2.8e-07 Score=99.90 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=46.8
Q ss_pred ccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 24 ESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 24 ~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
-+|++|-+. ++.+..|..++- . ...+.-+|++||||| ++++||+|+|++++.+++-++.
T Consensus 23 ~~~~~ivg~--~~~~~~l~~~l~----~----------~~~~~~~L~~G~~G~--GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 23 STIDECILP--AFDKETFKSITS----K----------GKIPHIILHSPSPGT--GKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp CSTTTSCCC--HHHHHHHHHHHH----T----------TCCCSEEEECSSTTS--SHHHHHHHHHHHTTEEEEEEET
T ss_pred CCHHHHhCc--HHHHHHHHHHHH----c----------CCCCeEEEeeCcCCC--CHHHHHHHHHHHhCCCEEEEcc
Confidence 478888877 888888877664 1 112356899999999 9999999999999988888875
No 136
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.67 E-value=8.4e-07 Score=89.14 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=57.6
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
..+.||||||+|.+-. +..+.|...++....++.+|++++.++
T Consensus 101 ~~~~vliiDe~~~l~~---~~~~~l~~~l~~~~~~~~~i~~~~~~~---------------------------------- 143 (226)
T 2chg_A 101 APFKIIFLDEADALTA---DAQAALRRTMEMYSKSCRFILSCNYVS---------------------------------- 143 (226)
T ss_dssp CSCEEEEEETGGGSCH---HHHHHHHHHHHHTTTTEEEEEEESCGG----------------------------------
T ss_pred cCceEEEEeChhhcCH---HHHHHHHHHHHhcCCCCeEEEEeCChh----------------------------------
Confidence 6789999999998432 345567777777777888888887653
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
.++.++.++|. .+++.+|+.++..++++..+.
T Consensus 144 ---------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 144 ---------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp ---------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred ---------hcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHH
Confidence 23456778885 999999999999999986653
No 137
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.65 E-value=3.2e-08 Score=97.17 Aligned_cols=82 Identities=17% Similarity=0.368 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhc------cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCcc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIA------GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLL 346 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~------~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~ 346 (836)
...+..+++.+... ..|.||||||+|.+.. +..++.+.+...++. +++++|+++|.++...
T Consensus 100 ~~~~~~~~~~~~~~--~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~~~~~--------- 166 (187)
T 2p65_A 100 EERLKSILKEVQDA--EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVSEYRQ--------- 166 (187)
T ss_dssp HHHHHHHHHHHHHT--TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHHHHHH---------
T ss_pred HHHHHHHHHHHHhc--CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHHHHHH---------
Confidence 44556666666551 4789999999999652 236777888877765 7899999999764100
Q ss_pred ccccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCC
Q 003253 347 FTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQ 397 (836)
Q Consensus 347 ~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~ 397 (836)
...++.++.+||. .|+|.+|+
T Consensus 167 -----------------------------~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 167 -----------------------------FIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp -----------------------------HTTTCHHHHHHEE-EEECCSCC
T ss_pred -----------------------------HHhccHHHHHhcC-cccCCCCC
Confidence 0134677899996 69999985
No 138
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.63 E-value=7.4e-09 Score=89.90 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCc
Q 003253 707 PNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAMAEGKPAPALSGCADIR 786 (836)
Q Consensus 707 ~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~air~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 786 (836)
++|.+||+.++++.++..++++..||..|+||||+||.++|++|++.++++ ...
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~--------------------------~~~ 54 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK--------------------------NRY 54 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHT--------------------------TCS
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--------------------------ccC
Confidence 468999999999888778899999999999999999999999999999885 124
Q ss_pred cccHHHHHHHHHHhc-cCcccc
Q 003253 787 PLNMDDFKYAHERVC-ASVSSE 807 (836)
Q Consensus 787 ~lt~eDf~~Al~~v~-pS~~~~ 807 (836)
.|+++||..|++++. ++.+.+
T Consensus 55 ~i~~~df~~Al~~v~~~~~~~~ 76 (82)
T 2dzn_B 55 VILQSDLEEAYATQVKTDNTVD 76 (82)
T ss_dssp EECHHHHHHHHHTTCC------
T ss_pred CcCHHHHHHHHHHHHcCcCChH
Confidence 799999999999984 555443
No 139
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.63 E-value=3.4e-07 Score=99.59 Aligned_cols=186 Identities=16% Similarity=0.154 Sum_probs=111.7
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT---- 606 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~---- 606 (836)
.....++|.+...+.|.+ +. . ..++|+||+|+|||+|++.+++.++..++.+++....
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~---------------~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR---------------A--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC---------------S--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCHHHhcChHHHHHHHHH-hc---------------C--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 355678899888888877 43 1 3799999999999999999999987777777765320
Q ss_pred -h--hc-------c------------------c--------c------cHHHHHHHHHHHHhc--CCceEEEccchhhhc
Q 003253 607 -S--KW-------F------------------G--------E------GEKYVKAVFSLASKI--APSVIFVDEVDSMLG 642 (836)
Q Consensus 607 -s--~~-------~------------------g--------~------~e~~i~~lf~~A~~~--~psIL~IDEID~L~~ 642 (836)
+ .. + + . ....+..++....+. .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 0 00 0 0 0 011234455444443 388999999998853
Q ss_pred CCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc---------HHHHhhccccccCCCCCHHHHHHHH
Q 003253 643 RRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD---------EAVIRRLPRRLMVNLPDAPNRAKIL 713 (836)
Q Consensus 643 ~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld---------~~l~rRf~~~I~v~~P~~~eR~~Il 713 (836)
.. ...... .+..+. +.. .++.+|.|++....+. ..+..|+...+.+++.+.++..+++
T Consensus 152 ~~-~~~~~~----~l~~~~---~~~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 152 LR-GVNLLP----ALAYAY---DNL-----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp CT-TCCCHH----HHHHHH---HHC-----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred cC-chhHHH----HHHHHH---HcC-----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 11 111112 222222 111 2455555655321111 1122354467889999999999999
Q ss_pred HHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHH
Q 003253 714 QVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVT 749 (836)
Q Consensus 714 ~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~ 749 (836)
...+...+...+. ...+...+.|+.. -+..++..
T Consensus 219 ~~~~~~~~~~~~~-~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFKD-YEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCCC-HHHHHHHHCSCHH-HHHHHHHH
T ss_pred HHHHHHcCCCCCc-HHHHHHHhCCCHH-HHHHHHHH
Confidence 9877644433332 3788888888654 45555543
No 140
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.61 E-value=6.6e-08 Score=97.44 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=60.4
Q ss_pred cccchhhhchH----HHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 530 GVTFDDIGALE----NVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 530 ~~~~~di~G~~----~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
..+|+++++.. .+.+.+..++.. .....++.+++|+||||||||++|++++..+ +.+++.+++
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAE----------YEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHH----------CCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHH----------hhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 46788877644 233344444431 1101123689999999999999999999988 677888888
Q ss_pred cccchhccccc-HHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 603 SSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 603 s~l~s~~~g~~-e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
+++...+.... ...+..++..... +.+|+|||++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 91 PELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 77644322110 0011223333332 469999999754
No 141
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.55 E-value=1.4e-06 Score=94.46 Aligned_cols=189 Identities=17% Similarity=0.172 Sum_probs=110.3
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccc----
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT---- 606 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~---- 606 (836)
..-..++|.+...+.|.+.+.. + ..++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~----------~------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN----------Y------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH----------C------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CChHhcCChHHHHHHHHHHHhc----------C------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 3456789999988888887651 1 4799999999999999999999876 5555543221
Q ss_pred --------h---hccc-------------------------ccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCchH
Q 003253 607 --------S---KWFG-------------------------EGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEH 650 (836)
Q Consensus 607 --------s---~~~g-------------------------~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~~ 650 (836)
. ..++ .....+..+...+....|.+|+|||++.+..... ...
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~- 148 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGG- 148 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTT-
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cch-
Confidence 0 0000 0011222222333333489999999998843100 001
Q ss_pred HHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCc---------HHHHhhccccccCCCCCHHHHHHHHHHHHhhCC
Q 003253 651 EAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLD---------EAVIRRLPRRLMVNLPDAPNRAKILQVILAKED 721 (836)
Q Consensus 651 ~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld---------~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~ 721 (836)
......+..+ ++.. .++.+|.|++....+. ..+..|+...+.+.+.+.++..+++...+...+
T Consensus 149 ~~~~~~L~~~---~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 149 KELLALFAYA---YDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp HHHHHHHHHH---HHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHH---HHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 1112222222 2221 2455555554321111 112235545788999999999999988776554
Q ss_pred CC-CcccHHHHHHHcCCCcHHHHHHHHH
Q 003253 722 LS-PDVDFDAIANMTDGYSGSDLKNLCV 748 (836)
Q Consensus 722 l~-~d~dl~~LA~~t~G~sg~DL~~L~~ 748 (836)
.. .+.....+...+.|+. .-+..++.
T Consensus 221 ~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 43 3445677888888865 44555544
No 142
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.49 E-value=1.7e-06 Score=92.74 Aligned_cols=105 Identities=9% Similarity=-0.010 Sum_probs=61.3
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCC-----------CcEEEEeeeccCCC-ccccCCCCCccccccCCchhh
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLP-----------DKVIVIGSHTHTDN-RKEKSHPGGLLFTKFGSNQTA 356 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~-----------g~v~vIgs~~~~d~-~~~~~~~~~~~~~~~~~~~~~ 356 (836)
....||||||+|++ ..+..+.|...|+... .++++|+++|.... ..+.. +. -..+.. -..
T Consensus 118 ~~~~vl~lDEi~~l---~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~--~~--~~~~~~-l~~ 189 (311)
T 4fcw_A 118 RPYSVILFDAIEKA---HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGL--QK--GWPYER-IRD 189 (311)
T ss_dssp CSSEEEEEETGGGS---CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTT--TS--CCCSST-HHH
T ss_pred CCCeEEEEeChhhc---CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhh--cc--cccHHH-HHH
Confidence 45689999999984 3455566666665432 27789999997310 00000 00 000000 000
Q ss_pred hccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHhhhh
Q 003253 357 LLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDRDSE 414 (836)
Q Consensus 357 ~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e~~~ 414 (836)
+++.++ ....+.+|..||+..+.+.+|+.+++..|++..+.+..+
T Consensus 190 ~~~~~~-------------~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 190 EVFKVL-------------QQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp HTHHHH-------------HHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred HHHHHH-------------HHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 000000 113356788999999999999999999999977766443
No 143
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.49 E-value=9.9e-08 Score=103.19 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=66.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeec--cccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISM--SSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENP 647 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~--s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~ 647 (836)
..++|+||||+|||+||.++|...+.++..++. .+.++.+....+..+..++..+.+.. +||||+++.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 458999999999999999999876655444444 44333333445566666666666654 99999999985433221
Q ss_pred ch----HHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcH
Q 003253 648 GE----HEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDE 689 (836)
Q Consensus 648 ~~----~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~ 689 (836)
.. ...+++.+..+...... .++.+|+++|. ...++
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k~------~gvtVIlttnp-~s~de 240 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAAS------RGCVVIASLNP-TSNDD 240 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHHH------HTCEEEEECCC-SSCSS
T ss_pred cccchHHHHHHHHHHHHHHHHhh------CCCEEEEEeCC-cccch
Confidence 00 12234444444333321 34677888884 44444
No 144
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.48 E-value=6.2e-07 Score=96.88 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=44.3
Q ss_pred cccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 25 SFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 25 ~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
+|++|-+. +..+..|..++-.... -....+.|||+||+|| ++++||+++|+.++.++..++.
T Consensus 10 ~~~~~ig~--~~~~~~l~~~l~~~~~----------~~~~~~~vll~G~~Gt--GKT~la~~i~~~~~~~~~~~~~ 71 (324)
T 1hqc_A 10 TLDEYIGQ--ERLKQKLRVYLEAAKA----------RKEPLEHLLLFGPPGL--GKTTLAHVIAHELGVNLRVTSG 71 (324)
T ss_dssp STTTCCSC--HHHHHHHHHHHHHHHH----------HCSCCCCCEEECCTTC--CCHHHHHHHHHHHTCCEEEECT
T ss_pred cHHHhhCH--HHHHHHHHHHHHHHHc----------cCCCCCcEEEECCCCC--CHHHHHHHHHHHhCCCEEEEec
Confidence 67777665 7676666655432111 0124578999999999 9999999999999887766553
No 145
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.45 E-value=2.5e-06 Score=92.74 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=30.3
Q ss_pred CceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 66 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 66 ~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
+.|||+||||| ++++||||||+.++.++..+..
T Consensus 47 ~~vll~G~pGt--GKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPGL--AKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CCEEEESCCCH--HHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCCC--cHHHHHHHHHHHhCCCeEEEec
Confidence 57999999999 9999999999999999887774
No 146
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.42 E-value=2.1e-06 Score=94.44 Aligned_cols=96 Identities=7% Similarity=0.018 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhcc--CcchhhHHHHHHhcC--CCcEEEEeeeccCCCccccCCCCCcccc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAG--NSDSYSTFKSRLEKL--PDKVIVIGSHTHTDNRKEKSHPGGLLFT 348 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~--~~~~~~~l~~~l~~l--~g~v~vIgs~~~~d~~~~~~~~~~~~~~ 348 (836)
..+++.+++.+.. ...|+||||||+|.+... ..+....+...++.. +.++.+||++|..+..
T Consensus 115 ~~~~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~------------ 180 (387)
T 2v1u_A 115 GEVYERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFV------------ 180 (387)
T ss_dssp HHHHHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTS------------
T ss_pred HHHHHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchH------------
Confidence 4456667776654 245999999999996554 344444444334433 5689999999987410
Q ss_pred ccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCc-eEEecCCChHHHHHHHHHhhH
Q 003253 349 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPN-KVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 349 ~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~-~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
+ .++.++.++|.. .+.+++|+.++..++++..+.
T Consensus 181 ----------~------------------~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 181 ----------E------------------NLEPRVKSSLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp ----------S------------------SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred ----------h------------------hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 0 224557777875 899999999999999997664
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.38 E-value=5.3e-06 Score=84.17 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=57.1
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
..|.||+|||+|.+ ..+..+.|...|+..+.++++|.+++..+
T Consensus 125 ~~~~vlviDe~~~l---~~~~~~~l~~~l~~~~~~~~~i~~t~~~~---------------------------------- 167 (250)
T 1njg_A 125 GRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATTDPQ---------------------------------- 167 (250)
T ss_dssp SSSEEEEEETGGGS---CHHHHHHHHHHHHSCCTTEEEEEEESCGG----------------------------------
T ss_pred CCceEEEEECcccc---cHHHHHHHHHHHhcCCCceEEEEEeCChH----------------------------------
Confidence 56899999999984 24456667777877777888998888654
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
.++.++.+++ ..+++++|+.++..++++..+.
T Consensus 168 ---------~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 168 ---------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp ---------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ---------hCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHH
Confidence 1233456666 7899999999999999986664
No 148
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.37 E-value=1.4e-06 Score=94.62 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=32.5
Q ss_pred CCCceeeecCCCchHHHHHHHHHHHhHh---CCeEEEEecccc
Q 003253 64 VNPRILLSGPAGSEIYQEMLAKALAHYF---GAKLLIFDSHSL 103 (836)
Q Consensus 64 ~~~~iLl~gp~g~e~y~~~l~kala~~~---~~~ll~~d~~~~ 103 (836)
..+.+||+||+|| ++++||+|+|+++ +.+++.++...+
T Consensus 36 ~~~~lll~G~~Gt--GKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVGT--GKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSSS--SHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCCC--cHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 3567999999999 9999999999999 888888875443
No 149
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.35 E-value=7.8e-06 Score=90.20 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC-cchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccC
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN-SDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFG 351 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~-~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~ 351 (836)
..+++.+++.+.. ..+ ||||||+|.+.... .+. +...|.....++.+|+++|..+..
T Consensus 120 ~~~~~~l~~~l~~---~~~-vlilDEi~~l~~~~~~~~---~l~~l~~~~~~~~iI~~t~~~~~~--------------- 177 (384)
T 2qby_B 120 GEYIDKIKNGTRN---IRA-IIYLDEVDTLVKRRGGDI---VLYQLLRSDANISVIMISNDINVR--------------- 177 (384)
T ss_dssp HHHHHHHHHHHSS---SCE-EEEEETTHHHHHSTTSHH---HHHHHHTSSSCEEEEEECSSTTTT---------------
T ss_pred HHHHHHHHHHhcc---CCC-EEEEECHHHhccCCCCce---eHHHHhcCCcceEEEEEECCCchH---------------
Confidence 4556777776655 555 99999999865432 333 122232222789999999876410
Q ss_pred CchhhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 352 SNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 352 ~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
+ .++.++.++|...+.+++|+.++..++++..+.
T Consensus 178 -------~------------------~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 178 -------D------------------YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp -------T------------------TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred -------h------------------hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 0 235567778877999999999999999997664
No 150
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.34 E-value=1.5e-06 Score=98.96 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=55.0
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
..+.||||||||.+-... .+.|...|+. +.|++||+||....
T Consensus 105 ~~~~iLfIDEI~~l~~~~---q~~LL~~le~--~~v~lI~att~n~~--------------------------------- 146 (447)
T 3pvs_A 105 GRRTILFVDEVHRFNKSQ---QDAFLPHIED--GTITFIGATTENPS--------------------------------- 146 (447)
T ss_dssp TCCEEEEEETTTCC---------CCHHHHHT--TSCEEEEEESSCGG---------------------------------
T ss_pred CCCcEEEEeChhhhCHHH---HHHHHHHHhc--CceEEEecCCCCcc---------------------------------
Confidence 678999999999853322 2335566665 78999999975531
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
.+++++|.+|+ ..+.+.+|+.++...+++..+.+
T Consensus 147 --------~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 147 --------FELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp --------GSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHC
T ss_pred --------cccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHH
Confidence 13467788888 58999999999999999977654
No 151
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.33 E-value=4.2e-06 Score=90.83 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCC
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGS 352 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~ 352 (836)
...++.+|+-+.. .+..|+||||||+|.+. ++.-+|+.+. ....-.++++|||..|..+..
T Consensus 116 ~~~L~~~f~~~~~-~~~~~~ii~lDE~d~l~-~q~~L~~l~~-~~~~~~s~~~vI~i~n~~d~~---------------- 176 (318)
T 3te6_A 116 LEALNFYITNVPK-AKKRKTLILIQNPENLL-SEKILQYFEK-WISSKNSKLSIICVGGHNVTI---------------- 176 (318)
T ss_dssp HHHHHHHHHHSCG-GGSCEEEEEEECCSSSC-CTHHHHHHHH-HHHCSSCCEEEEEECCSSCCC----------------
T ss_pred HHHHHHHHHHhhh-ccCCceEEEEecHHHhh-cchHHHHHHh-cccccCCcEEEEEEecCcccc----------------
Confidence 4566777776521 23689999999999966 4444444333 223334689999999987631
Q ss_pred chhhhccccCCCccccccccCCCchhHHHHHhhhCC-ceEEecCCChHHHHHHHHHhhHh
Q 003253 353 NQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFP-NKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 353 ~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~-~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
+ + .++.++..||. ..|.+.+.+.++-..|++..+..
T Consensus 177 ------~-------~----------~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 177 ------R-------E----------QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp ------H-------H----------HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ------h-------h----------hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 1 34555777885 68999999999999999977643
No 152
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.29 E-value=5.6e-07 Score=91.35 Aligned_cols=128 Identities=14% Similarity=0.195 Sum_probs=76.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------C-CCcceeeccccchhcc----------cccHH--HHHHHHHHH--Hh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA--------G-ANFINISMSSITSKWF----------GEGEK--YVKAVFSLA--SK 626 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l--------~-~~~i~v~~s~l~s~~~----------g~~e~--~i~~lf~~A--~~ 626 (836)
.-.|++|+||||||++|.+.+... | .+++..++.++..... ..... ....++..+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 468999999999999998875443 4 5665555555432221 11100 012222221 22
Q ss_pred cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCH
Q 003253 627 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDA 706 (836)
Q Consensus 627 ~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~ 706 (836)
...+||+|||++.+++.+.... +. .+ ++..+..- ....+-||.+|+.+..|+..+++|+...+++..|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~--e~-~r----ll~~l~~~---r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGS--KI-PE----NVQWLNTH---RHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTC--CC-CH----HHHGGGGT---TTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccc--hh-HH----HHHHHHhc---CcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 3468999999999976542111 11 12 22233221 223456677777799999999999988888876543
Q ss_pred H
Q 003253 707 P 707 (836)
Q Consensus 707 ~ 707 (836)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 3
No 153
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.27 E-value=5.7e-07 Score=97.43 Aligned_cols=70 Identities=24% Similarity=0.334 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCCcceeeccccchhccccc-HHHHHHHHHHHHhcCCceEEEccchhh
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVIFVDEVDSM 640 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~s~l~s~~~g~~-e~~i~~lf~~A~~~~psIL~IDEID~L 640 (836)
..+++|+||||||||+||.++|+++ +.+++.++++++...+.... ......++.... .+.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 4689999999999999999999866 47788888777654432211 111112222222 3469999999654
No 154
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.25 E-value=8.2e-06 Score=88.92 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=39.7
Q ss_pred cccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhCC
Q 003253 23 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFGA 93 (836)
Q Consensus 23 ~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~ 93 (836)
..+|++|.+. ++.+..+..++..+ ..+.|||+||||| ++++|||++|+.++-
T Consensus 20 ~~~f~~i~G~--~~~~~~l~~~~~~~---------------~~~~vLl~G~~Gt--GKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAIVGQ--EDMKLALLLTAVDP---------------GIGGVLVFGDRGT--GKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGSCSC--HHHHHHHHHHHHCG---------------GGCCEEEECCGGG--CTTHHHHHHHHHSCC
T ss_pred CCCchhccCh--HHHHHHHHHHhhCC---------------CCceEEEECCCCc--cHHHHHHHHHHhCcc
Confidence 4689998777 77777665554321 2234999999999 999999999999874
No 155
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.20 E-value=4.5e-06 Score=84.53 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
+++||+||||||||++|.++|+.+...++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999998655443
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=1.6e-05 Score=85.28 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=56.7
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
..+.||+|||+|.+-. +..+.|...++..++++++|.+++..+
T Consensus 106 ~~~~viiiDe~~~l~~---~~~~~L~~~le~~~~~~~~il~~~~~~---------------------------------- 148 (323)
T 1sxj_B 106 GKHKIVILDEADSMTA---GAQQALRRTMELYSNSTRFAFACNQSN---------------------------------- 148 (323)
T ss_dssp TCCEEEEEESGGGSCH---HHHHTTHHHHHHTTTTEEEEEEESCGG----------------------------------
T ss_pred CCceEEEEECcccCCH---HHHHHHHHHHhccCCCceEEEEeCChh----------------------------------
Confidence 3488999999998432 345567777877777888888887553
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++.++|.+|+ ..+.+.+|+.++..++++..+.
T Consensus 149 ---------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 149 ---------KIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp ---------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ---------hchhHHHhhc-eEEeecCCCHHHHHHHHHHHHH
Confidence 3345677777 4999999999999999986654
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.18 E-value=4.9e-06 Score=89.13 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
..+.||+|||+|.+- .+..+.|...|+..+.++++|+++|..+
T Consensus 101 ~~~~vliiDe~~~l~---~~~~~~L~~~le~~~~~~~~i~~~~~~~---------------------------------- 143 (319)
T 2chq_A 101 APFKIIFLDEADALT---ADAQAALRRTMEMYSKSCRFILSCNYVS---------------------------------- 143 (319)
T ss_dssp CCCEEEEEETGGGSC---HHHHHTTGGGTSSSSSSEEEEEEESCGG----------------------------------
T ss_pred CCceEEEEeCCCcCC---HHHHHHHHHHHHhcCCCCeEEEEeCChh----------------------------------
Confidence 457899999999842 2334555566676677899999988653
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++.++|.+|+ ..+.+.+|+.++...+++..+.
T Consensus 144 ---------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 144 ---------RIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp ---------GSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHH
T ss_pred ---------hcchHHHhhC-eEEEecCCCHHHHHHHHHHHHH
Confidence 3355678888 5999999999999999986653
No 158
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.16 E-value=1.2e-06 Score=99.74 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=54.9
Q ss_pred CCeEEEEcCchhhhc---cCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcc
Q 003253 290 CPFILFMKDAEKSIA---GNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSF 366 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~---~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~ 366 (836)
.|.||||||+|.+.. ...++++.+....+ .|..+||++++.+.. ++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~--~~~~iIitt~~~~~~----------------------l~------- 242 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQK----------------------LS------- 242 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT--TTCEEEEEESSCGGG----------------------CS-------
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEECCCHHH----------------------HH-------
Confidence 688999999998553 23445555544443 367778877664431 00
Q ss_pred ccccccCCCchhHHHHHhhhCC--ceEEecCCChHHHHHHHHHhhHh
Q 003253 367 GRLHDRGKEIPKATKLLTKLFP--NKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 367 r~~~~~~~~~~~~~~~l~~~F~--~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
.++++|..||. ..+.+.+|+.++|..||+..+..
T Consensus 243 -----------~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 243 -----------EFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp -----------SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 23556788885 68999999999999999976643
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.12 E-value=3.3e-05 Score=84.78 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=59.0
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
..+.||+|||+|.+ ..+..+.|...|+..++++++|++++..+
T Consensus 118 ~~~~vliiDe~~~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---------------------------------- 160 (373)
T 1jr3_A 118 GRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATTDPQ---------------------------------- 160 (373)
T ss_dssp SSSEEEEEECGGGS---CHHHHHHHHHHHHSCCSSEEEEEEESCGG----------------------------------
T ss_pred CCeEEEEEECcchh---cHHHHHHHHHHHhcCCCceEEEEEeCChH----------------------------------
Confidence 45789999999974 23456778888888888999999988653
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++...+.+|+ ..+.+.+|+.++...+++..+.+
T Consensus 161 ---------~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 161 ---------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp ---------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ---------hCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 2234566677 79999999999999999866643
No 160
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.09 E-value=6.9e-05 Score=82.09 Aligned_cols=95 Identities=11% Similarity=0.120 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhccC-cchhhHHHHHHhcC-CCcEEEEeeeccCCCccccCCCCCcccccc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAGN-SDSYSTFKSRLEKL-PDKVIVIGSHTHTDNRKEKSHPGGLLFTKF 350 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~-~~~~~~l~~~l~~l-~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~ 350 (836)
..+++.+++.+.. ...|+||+|||+|.+.... .+....+...++.+ ..++.+|++++..+.
T Consensus 113 ~~~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~--------------- 175 (386)
T 2qby_A 113 AELYRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF--------------- 175 (386)
T ss_dssp HHHHHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG---------------
T ss_pred HHHHHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh---------------
Confidence 4456667777665 2349999999999976543 66666666666543 458999999887641
Q ss_pred CCchhhhccccCCCccccccccCCCchhHHHHHhhhCC-ceEEecCCChHHHHHHHHHhh
Q 003253 351 GSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFP-NKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 351 ~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~-~~ieI~lP~~e~rl~Ilk~~l 409 (836)
.+ .++..+.++|. ..+.+++++.++..++++..+
T Consensus 176 -------~~------------------~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 176 -------VD------------------LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp -------GG------------------GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred -------Hh------------------hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 00 12333555564 489999999999999999655
No 161
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.05 E-value=3.5e-05 Score=78.62 Aligned_cols=52 Identities=21% Similarity=0.116 Sum_probs=36.0
Q ss_pred cccccccc-ccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhC
Q 003253 24 ESFENFPY-YLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG 92 (836)
Q Consensus 24 ~~~~~fpy-~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~ 92 (836)
.+|++|-+ --++.....|..++.. +..+.|||+||+|| ++++||+++|+++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~ll~G~~G~--GKT~la~~l~~~~~ 77 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG---------------DGVQAIYLWGPVKS--GRTHLIHAACARAN 77 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT---------------CSCSEEEEECSTTS--SHHHHHHHHHHHHH
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC---------------CCCCeEEEECCCCC--CHHHHHHHHHHHHH
Confidence 57888765 1223444444444321 13578999999999 99999999999876
No 162
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.05 E-value=9.3e-05 Score=80.48 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
.+.||||||+|.+-. +..+.|...|+..+.++.+|.++|.++
T Consensus 133 ~~~vliiDE~~~l~~---~~~~~Ll~~le~~~~~~~~il~~~~~~----------------------------------- 174 (353)
T 1sxj_D 133 PYKIIILDEADSMTA---DAQSALRRTMETYSGVTRFCLICNYVT----------------------------------- 174 (353)
T ss_dssp SCEEEEETTGGGSCH---HHHHHHHHHHHHTTTTEEEEEEESCGG-----------------------------------
T ss_pred CceEEEEECCCccCH---HHHHHHHHHHHhcCCCceEEEEeCchh-----------------------------------
Confidence 457999999998432 334667777877777777777777553
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhH
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
++.+++.+|+. .+.+.+|+.++...+++..+.
T Consensus 175 --------~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~ 206 (353)
T 1sxj_D 175 --------RIIDPLASQCS-KFRFKALDASNAIDRLRFISE 206 (353)
T ss_dssp --------GSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred --------hCcchhhccCc-eEEeCCCCHHHHHHHHHHHHH
Confidence 33556888884 899999999999999986553
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=3.3e-05 Score=82.98 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
..+.||+|||+|.+- .+..+.|...|+..+.++.+|.++|.++
T Consensus 109 ~~~~vliiDe~~~l~---~~~~~~L~~~le~~~~~~~~i~~~~~~~---------------------------------- 151 (327)
T 1iqp_A 109 ASFKIIFLDEADALT---QDAQQALRRTMEMFSSNVRFILSCNYSS---------------------------------- 151 (327)
T ss_dssp CSCEEEEEETGGGSC---HHHHHHHHHHHHHTTTTEEEEEEESCGG----------------------------------
T ss_pred CCCeEEEEeCCCcCC---HHHHHHHHHHHHhcCCCCeEEEEeCCcc----------------------------------
Confidence 457899999999842 3455667778887778888888887653
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhh
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l 409 (836)
++.+++.+|+. .+.+.+|+.++...+++..+
T Consensus 152 ---------~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 152 ---------KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIA 182 (327)
T ss_dssp ---------GSCHHHHHTEE-EEECCCCCHHHHHHHHHHHH
T ss_pred ---------ccCHHHHhhCc-EEEecCCCHHHHHHHHHHHH
Confidence 23456777884 89999999999988888554
No 164
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.97 E-value=8.3e-06 Score=110.06 Aligned_cols=139 Identities=21% Similarity=0.358 Sum_probs=87.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCCcceeeccccchhcccccHHHHHHHHHHH----Hh------------cCCceE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFGEGEKYVKAVFSLA----SK------------IAPSVI 632 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l-~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A----~~------------~~psIL 632 (836)
+++||+||||||||+++......+ +.+++.++++.-. +...+...++.. .+ ....|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 469999999999998776554443 6667777776532 223333333321 00 112499
Q ss_pred EEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcc------cCcccEEEEeccCCC-----CCCcHHHHhhccccccC
Q 003253 633 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDTERILVLAATNRP-----FDLDEAVIRRLPRRLMV 701 (836)
Q Consensus 633 ~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~------~~~~~vlVIaTTn~~-----~~Ld~~l~rRf~~~I~v 701 (836)
||||++.- ..+.-+.+.. ..++.+++.. .+... ..-.++.+|||+|.+ ..++++++||| .++.+
T Consensus 1379 FiDDiNmp--~~D~yGtQ~~-ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i 1453 (3245)
T 3vkg_A 1379 FCDEINLP--STDKYGTQRV-ITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLV 1453 (3245)
T ss_dssp EETTTTCC--CCCTTSCCHH-HHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEEC
T ss_pred EecccCCC--CccccccccH-HHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEe
Confidence 99999843 2222222222 2344444432 11111 112568899999987 45999999999 67999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 003253 702 NLPDAPNRAKILQVILAK 719 (836)
Q Consensus 702 ~~P~~~eR~~Il~~~l~~ 719 (836)
+.|+.++...|+..++..
T Consensus 1454 ~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998877653
No 165
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.96 E-value=7.4e-06 Score=86.44 Aligned_cols=27 Identities=44% Similarity=0.592 Sum_probs=24.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGA 595 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~ 595 (836)
.++++|+||||||||++|.+||+.++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 468999999999999999999998643
No 166
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.94 E-value=3.7e-05 Score=103.87 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=92.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhcCCCCCch
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGE 649 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~~r~~~~~ 649 (836)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-.. ...+..+|.-+.+. .+-.++|||+++ ....
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl-----~~~v 672 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL-----EERI 672 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----CHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC-----CHHH
Confidence 45789999999999999999999999999999987432 34566777666654 478899999987 3222
Q ss_pred HHHHHHHHHHHHHHh---------c-CCcccCcccEEEEeccCC----CCCCcHHHHhhccccccCCCCCHHHHHHHHH
Q 003253 650 HEAMRKMKNEFMVNW---------D-GLRTKDTERILVLAATNR----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQ 714 (836)
Q Consensus 650 ~~~~~~il~~ll~~l---------d-~~~~~~~~~vlVIaTTn~----~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~ 714 (836)
.......++.+...+ . |-...-+..+.|++|.|. ...|++.+..|| +.+.+..|+.+...+|+-
T Consensus 673 LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 673 LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVML 750 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHH
Confidence 222222222221111 1 211122345778889985 457999999999 779999999988887753
No 167
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.88 E-value=0.00015 Score=75.90 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=40.3
Q ss_pred cccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHHHhHhC---CeEEEEe
Q 003253 23 QESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG---AKLLIFD 99 (836)
Q Consensus 23 ~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~---~~ll~~d 99 (836)
+.||++|-+. |+..+.++..+..+ ......|||+||+|| ++++||||+|+... .+++.++
T Consensus 2 ~~~f~~~ig~-~~~~~~~~~~~~~~--------------~~~~~~vll~G~~Gt--GKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 2 AEYKDNLLGE-ANSFLEVLEQVSHL--------------APLDKPVLIIGERGT--GKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp --------CC-CHHHHHHHHHHHHH--------------TTSCSCEEEECCTTS--CHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CcccccceeC-CHHHHHHHHHHHHH--------------hCCCCCEEEECCCCC--cHHHHHHHHHHhcCccCCCeEEEe
Confidence 3578888654 44444444333221 123467999999999 99999999999875 7899998
Q ss_pred ccccC
Q 003253 100 SHSLL 104 (836)
Q Consensus 100 ~~~~~ 104 (836)
.+.+.
T Consensus 65 ~~~~~ 69 (265)
T 2bjv_A 65 CAALN 69 (265)
T ss_dssp GGGSC
T ss_pred cCCCC
Confidence 76653
No 168
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.87 E-value=2.2e-05 Score=102.19 Aligned_cols=113 Identities=22% Similarity=0.268 Sum_probs=72.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc----hhcc------------cccHHHHHHHHHHHHh
Q 003253 566 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SKWF------------GEGEKYVKAVFSLASK 626 (836)
Q Consensus 566 ~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~----s~~~------------g~~e~~i~~lf~~A~~ 626 (836)
..+..+++|+||||||||+||.+++.+. |..+..++..+.. .... ...+..+..++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 3456789999999999999999998876 4555666654321 1112 2446778888888899
Q ss_pred cCCceEEEccchhhhcCCC-----CCchHHHHHHHHHHHHHHhcCCcccCcccEEEEec
Q 003253 627 IAPSVIFVDEVDSMLGRRE-----NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAA 680 (836)
Q Consensus 627 ~~psIL~IDEID~L~~~r~-----~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaT 680 (836)
..|++||||+++.+.+... .........+++.+++..+.+.... ..++||.|
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~--~~v~VI~t 1560 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLIFI 1560 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT--TTCEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHh--CCcEEEEE
Confidence 9999999999998875320 0000111234555555555554433 34555543
No 169
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.84 E-value=0.00016 Score=78.89 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=97.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CC-CcceeeccccchhcccccHHHHHHHHHHHHh----cCCceEEEccchh-h
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GA-NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVIFVDEVDS-M 640 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~-~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~----~~psIL~IDEID~-L 640 (836)
+.+||+||+|.||++.++++++.+ +. ++..+. + .+ ...++.+++.+.. ....|++|||++. +
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~----~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---I----DP--NTDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---C----CT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---e----cC--CCCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 589999999999999999998876 32 211111 1 01 1224555554432 2457999999997 6
Q ss_pred hcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC-----CCCCcHHHHhhccccccCCCCCHHHHHHHHHH
Q 003253 641 LGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR-----PFDLDEAVIRRLPRRLMVNLPDAPNRAKILQV 715 (836)
Q Consensus 641 ~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~-----~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~ 715 (836)
+... .+.|+..+... +...++|+++++. ...+.+.+.+|+ .++.+..++..+....++.
T Consensus 90 -----~~~~-------~~aLl~~le~p---~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 90 -----NAAI-------NEQLLTLTGLL---HDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp -----CTTH-------HHHHHHHHTTC---BTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHH
T ss_pred -----ChHH-------HHHHHHHHhcC---CCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHH
Confidence 2222 23334444432 1233444444432 234667888888 6789999999999999999
Q ss_pred HHhhCCCC-CcccHHHHHHHcCCCcHHHHHHHHHHHH
Q 003253 716 ILAKEDLS-PDVDFDAIANMTDGYSGSDLKNLCVTAA 751 (836)
Q Consensus 716 ~l~~~~l~-~d~dl~~LA~~t~G~sg~DL~~L~~~A~ 751 (836)
.+...++. ++..+..|+..+.| +.+++.+.++..+
T Consensus 154 ~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~ 189 (343)
T 1jr3_D 154 RAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLS 189 (343)
T ss_dssp HHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHH
Confidence 99888765 44456777777765 5555555555444
No 170
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.82 E-value=0.00013 Score=80.39 Aligned_cols=93 Identities=12% Similarity=0.096 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhccCcchhhHHHHHHhcCC----CcEEEEeeeccCCCccccCCCCCcccc
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLP----DKVIVIGSHTHTDNRKEKSHPGGLLFT 348 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~----g~v~vIgs~~~~d~~~~~~~~~~~~~~ 348 (836)
..+++.+.+.+.. ...|.||+|||+|.+ ..+..+.|...++..+ .++.+|++++.++.
T Consensus 110 ~~~~~~l~~~l~~--~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~------------- 171 (389)
T 1fnn_A 110 DEFLALLVEHLRE--RDLYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV------------- 171 (389)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH-------------
T ss_pred HHHHHHHHHHHhh--cCCeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH-------------
Confidence 4455566666554 256999999999985 4556666666665443 48889988886631
Q ss_pred ccCCchhhhccccCCCccccccccCCCchhHHHHHhhhCCc-eEEecCCChHHHHHHHHHhhH
Q 003253 349 KFGSNQTALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPN-KVTIHMPQDEALLASWKHQLD 410 (836)
Q Consensus 349 ~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~-~ieI~lP~~e~rl~Ilk~~l~ 410 (836)
.+ .++..+.++|.. .+.+++++.++..++++..+.
T Consensus 172 ---------~~------------------~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 172 ---------LN------------------NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp ---------HH------------------TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred ---------HH------------------HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 11 123345566654 899999999999999986553
No 171
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.82 E-value=9.6e-05 Score=85.08 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=24.1
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCC
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGA 93 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~ 93 (836)
.+.|||+||||| ++++||||||+.++.
T Consensus 41 ~~~VLL~GpPGt--GKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 41 GESVFLLGPPGI--AKSLIARRLKFAFQN 67 (500)
T ss_dssp TCEEEEECCSSS--SHHHHHHHGGGGBSS
T ss_pred CCeeEeecCchH--HHHHHHHHHHHHHhh
Confidence 357999999999 999999999998853
No 172
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=0.00054 Score=74.66 Aligned_cols=76 Identities=9% Similarity=0.138 Sum_probs=57.7
Q ss_pred CCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCcccc
Q 003253 289 SCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGR 368 (836)
Q Consensus 289 ~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~ 368 (836)
..|-||+|||++. +. .+..+.|...|+..+.++.+|.+++.++
T Consensus 133 ~~~~vlilDE~~~-L~--~~~~~~L~~~le~~~~~~~~Il~t~~~~---------------------------------- 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LT--KDAQAALRRTMEKYSKNIRLIMVCDSMS---------------------------------- 175 (354)
T ss_dssp -CCEEEEEECTTS-SC--HHHHHHHHHHHHHSTTTEEEEEEESCSC----------------------------------
T ss_pred CCCeEEEEeCccc-cC--HHHHHHHHHHHHhhcCCCEEEEEeCCHH----------------------------------
Confidence 3677999999998 43 4556677778877777777777777664
Q ss_pred ccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhhHh
Q 003253 369 LHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQLDR 411 (836)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l~e 411 (836)
++.+.|.+|+ ..+.+.+|+.++..++|+....+
T Consensus 176 ---------~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 176 ---------PIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp ---------SSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 2344577888 89999999999999999966643
No 173
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.73 E-value=0.00012 Score=72.54 Aligned_cols=26 Identities=38% Similarity=0.692 Sum_probs=23.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCC
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGAN 596 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~ 596 (836)
.+.|.||+|+|||+|++.|+..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999999988643
No 174
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.69 E-value=3.5e-05 Score=73.57 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=29.5
Q ss_pred cCCCCceeeecCCCchHHHHHHHHHHHhHh---CCeEEEEec
Q 003253 62 TTVNPRILLSGPAGSEIYQEMLAKALAHYF---GAKLLIFDS 100 (836)
Q Consensus 62 ~~~~~~iLl~gp~g~e~y~~~l~kala~~~---~~~ll~~d~ 100 (836)
......|||+||+|| ++++||||++++. +.+++ ++.
T Consensus 21 a~~~~~vll~G~~Gt--GKt~lA~~i~~~~~~~~~~~v-~~~ 59 (145)
T 3n70_A 21 SETDIAVWLYGAPGT--GRMTGARYLHQFGRNAQGEFV-YRE 59 (145)
T ss_dssp TTCCSCEEEESSTTS--SHHHHHHHHHHSSTTTTSCCE-EEE
T ss_pred hCCCCCEEEECCCCC--CHHHHHHHHHHhCCccCCCEE-EEC
Confidence 345667999999999 9999999999876 56666 664
No 175
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.67 E-value=0.00033 Score=76.33 Aligned_cols=86 Identities=9% Similarity=0.113 Sum_probs=63.7
Q ss_pred HHHHHHHHhhcc-CCCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCch
Q 003253 276 INTLFEVVFSES-RSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 354 (836)
Q Consensus 276 i~~l~~~~~~~~-~~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~ 354 (836)
++.+.+.+..-. ....-|++|||+|.+ +.+..+.|...|+.-+.++++|..++.++
T Consensus 93 ir~l~~~~~~~~~~~~~kvviIdead~l---~~~a~naLLk~lEep~~~~~~Il~t~~~~-------------------- 149 (334)
T 1a5t_A 93 VREVTEKLNEHARLGGAKVVWVTDAALL---TDAAANALLKTLEEPPAETWFFLATREPE-------------------- 149 (334)
T ss_dssp HHHHHHHTTSCCTTSSCEEEEESCGGGB---CHHHHHHHHHHHTSCCTTEEEEEEESCGG--------------------
T ss_pred HHHHHHHHhhccccCCcEEEEECchhhc---CHHHHHHHHHHhcCCCCCeEEEEEeCChH--------------------
Confidence 445555554321 245789999999983 24566788888988778888888888764
Q ss_pred hhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHh
Q 003253 355 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQ 408 (836)
Q Consensus 355 ~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~ 408 (836)
++...|.+|. ..+.+..|+.++..++++..
T Consensus 150 -----------------------~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~ 179 (334)
T 1a5t_A 150 -----------------------RLLATLRSRC-RLHYLAPPPEQYAVTWLSRE 179 (334)
T ss_dssp -----------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHH
T ss_pred -----------------------hCcHHHhhcc-eeeeCCCCCHHHHHHHHHHh
Confidence 3456688888 68999999999999888844
No 176
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.63 E-value=1.8e-05 Score=75.42 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=28.2
Q ss_pred CCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 63 TVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 63 ~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
.....|||+||+|| ++++||||++++.+ +++.++
T Consensus 25 ~~~~~vll~G~~Gt--GKt~lA~~i~~~~~-~~~~~~ 58 (143)
T 3co5_A 25 KRTSPVFLTGEAGS--PFETVARYFHKNGT-PWVSPA 58 (143)
T ss_dssp TCSSCEEEEEETTC--CHHHHHGGGCCTTS-CEECCS
T ss_pred CCCCcEEEECCCCc--cHHHHHHHHHHhCC-CeEEec
Confidence 34567999999999 99999999999887 555554
No 177
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.44 E-value=6.1e-05 Score=64.27 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=38.6
Q ss_pred cCCChHHHHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 394 HMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 394 ~lP~~e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
++|+.++|.+||+.++ ++..+..+++....+..+.||+|+||..+|.++.+
T Consensus 1 plPd~~~R~~Il~~~l----~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~ 51 (78)
T 3kw6_A 1 PPPNEEARLDILKIHS----RKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 51 (78)
T ss_dssp CCCCHHHHHHHHHHHH----TTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHh----cCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5899999999999998 44555666766667777777777777777666554
No 178
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=0.001 Score=71.76 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=61.5
Q ss_pred HHHHHHHHhhcc-CCCCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCch
Q 003253 276 INTLFEVVFSES-RSCPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQ 354 (836)
Q Consensus 276 i~~l~~~~~~~~-~~~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~ 354 (836)
|+.+.+.+..-. ....-|++|||+|.+ +.+..|.|.+.|+.-++++++|.+++.+.
T Consensus 67 ir~li~~~~~~p~~~~~kvviIdead~l---t~~a~naLLk~LEep~~~t~fIl~t~~~~-------------------- 123 (305)
T 2gno_A 67 IRTIKDFLNYSPELYTRKYVIVHDCERM---TQQAANAFLKALEEPPEYAVIVLNTRRWH-------------------- 123 (305)
T ss_dssp HHHHHHHHTSCCSSSSSEEEEETTGGGB---CHHHHHHTHHHHHSCCTTEEEEEEESCGG--------------------
T ss_pred HHHHHHHHhhccccCCceEEEeccHHHh---CHHHHHHHHHHHhCCCCCeEEEEEECChH--------------------
Confidence 445555543311 123459999999984 34556788889999888888888887653
Q ss_pred hhhccccCCCccccccccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhh
Q 003253 355 TALLDLAFPDSFGRLHDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 355 ~~~~d~a~~rp~r~~~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l 409 (836)
++.++|.+| .+.+..|++++-.+.++...
T Consensus 124 -----------------------kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 124 -----------------------YLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -----------------------GSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred -----------------------hChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 345678888 89999999999998888543
No 179
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.43 E-value=5.5e-05 Score=66.00 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=42.3
Q ss_pred ecCCChHHHHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 393 IHMPQDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 393 I~lP~~e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
-.+|+.++|.+||+.++ +++.+..+++....+..|.||+|+||..||.++.+
T Consensus 8 ~~~Pd~~~R~~IL~~~l----~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~ 59 (86)
T 2krk_A 8 HSHPNEEARLDILKIHS----RKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGM 59 (86)
T ss_dssp CCCCCHHHHHHHHHHHT----TTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH----cCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 36899999999999999 45566677777777888888888888888876665
No 180
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.40 E-value=0.0015 Score=71.17 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=26.5
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEE
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLL 96 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll 96 (836)
...++|+||+|| ++++|||++|+..++++.
T Consensus 51 ~~~~ll~Gp~G~--GKTTLa~~ia~~l~~~~~ 80 (334)
T 1in4_A 51 LDHVLLAGPPGL--GKTTLAHIIASELQTNIH 80 (334)
T ss_dssp CCCEEEESSTTS--SHHHHHHHHHHHHTCCEE
T ss_pred CCeEEEECCCCC--cHHHHHHHHHHHhCCCEE
Confidence 467999999999 999999999999987654
No 181
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.34 E-value=0.0022 Score=69.69 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=55.3
Q ss_pred CCeEEEEcCchhhhccCcchhhHHHHHHhcCCCcEEEEeeeccCCCccccCCCCCccccccCCchhhhccccCCCccccc
Q 003253 290 CPFILFMKDAEKSIAGNSDSYSTFKSRLEKLPDKVIVIGSHTHTDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRL 369 (836)
Q Consensus 290 ~p~Ilfi~ei~~~l~~~~~~~~~l~~~l~~l~g~v~vIgs~~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~a~~rp~r~~ 369 (836)
++-|++|||+|.+ . .+..+.|...|+..+.++.+|.++|..+
T Consensus 110 ~~~viiiDe~~~l-~--~~~~~~L~~~le~~~~~~~~il~~n~~~----------------------------------- 151 (340)
T 1sxj_C 110 GFKLIILDEADAM-T--NAAQNALRRVIERYTKNTRFCVLANYAH----------------------------------- 151 (340)
T ss_dssp SCEEEEETTGGGS-C--HHHHHHHHHHHHHTTTTEEEEEEESCGG-----------------------------------
T ss_pred CceEEEEeCCCCC-C--HHHHHHHHHHHhcCCCCeEEEEEecCcc-----------------------------------
Confidence 4679999999974 2 3456677788888888888888888653
Q ss_pred cccCCCchhHHHHHhhhCCceEEecCCChHHHHHHHHHhh
Q 003253 370 HDRGKEIPKATKLLTKLFPNKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 370 ~~~~~~~~~~~~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l 409 (836)
++.++|..|+ ..+.+..++.++..++++..+
T Consensus 152 --------~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 152 --------KLTPALLSQC-TRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp --------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHH
T ss_pred --------ccchhHHhhc-eeEeccCCCHHHHHHHHHHHH
Confidence 3455688888 588999999888888777544
No 182
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.31 E-value=9.6e-05 Score=82.09 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=63.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccccchhcccccHHHHHHHHHHHHhcCCceEEEccchhhhc-CCC
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLG-RRE 645 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l~s~~~g~~e~~i~~lf~~A~~~~psIL~IDEID~L~~-~r~ 645 (836)
++...++|+||||+|||+++++++...+..++.+..+.- . ....+. .-.+..++++||++.+.. .+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~----~~~~lg------~~~q~~~~l~dd~~~~~~~~r~ 234 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R----LNFELG------VAIDQFLVVFEDVKGTGGESRD 234 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T----HHHHHG------GGTTCSCEEETTCCCSTTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h----HHHHHH------HhcchhHHHHHHHHHHHHHHhh
Confidence 344689999999999999999999988766554332210 0 000111 222446789999998764 121
Q ss_pred CCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHh--hccccccC
Q 003253 646 NPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIR--RLPRRLMV 701 (836)
Q Consensus 646 ~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~r--Rf~~~I~v 701 (836)
-....... ....+...++| .+.|+++||+++.+ +++++ |++..+..
T Consensus 235 l~~~~~~~--~~~~l~~~ldG-------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 235 LPSGQGIN--NLDNLRDYLDG-------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp CCCCSHHH--HHHTTHHHHHC-------SSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred ccccCcch--HHHHHHHHhcC-------CCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 11101100 11222333443 24567778888877 44544 55444443
No 183
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.31 E-value=0.00087 Score=67.86 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=26.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceee
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINIS 601 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~ 601 (836)
+...++|+||+|+|||+|++.++..+ +..++.++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 33568999999999999999998654 44554444
No 184
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.28 E-value=0.0029 Score=65.03 Aligned_cols=161 Identities=20% Similarity=0.279 Sum_probs=84.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccc--------cchhcc----------cc--cHHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS--------ITSKWF----------GE--GEKYVKAVFSLASK 626 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~--------l~s~~~----------g~--~e~~i~~lf~~A~~ 626 (836)
..|++.|+||+|||+++-.+|..+ |..++.++... +..... +. .+..+..++ .
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~ 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----K 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----H
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----h
Confidence 469999999999999999999876 66665444421 111100 00 112233322 2
Q ss_pred cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCC------------------CCCCc
Q 003253 627 IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNR------------------PFDLD 688 (836)
Q Consensus 627 ~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~------------------~~~Ld 688 (836)
..|.+|+|||+-..-..... . ......+ ..+ + ...+=|++|+|. .+.++
T Consensus 83 ~~pdlvIVDElG~~~~~~~r-~-~~~~qDV-~~~---l-------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vp 149 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSR-H-TKRWQDI-QEL---L-------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLP 149 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCS-S-SBHHHHH-HHH---H-------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBC
T ss_pred cCCCEEEEeCCCCCCcccch-h-HHHHHHH-HHH---H-------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCc
Confidence 46899999998754111100 0 0111111 111 1 123456667662 24567
Q ss_pred HHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 003253 689 EAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSGSDLKNLCVTAAHRP 754 (836)
Q Consensus 689 ~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg~DL~~L~~~A~~~a 754 (836)
+.++.+.+.+..++.|..+ +++.+-...-..++..-..+... |+...|..|-+-|..+.
T Consensus 150 d~~~~~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~ 208 (228)
T 2r8r_A 150 DWVLQEAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTA 208 (228)
T ss_dssp HHHHHTCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_pred cHHHhhCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHH
Confidence 7777777777777776654 33333222222333333334333 67777766655555443
No 185
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.20 E-value=0.00038 Score=74.95 Aligned_cols=40 Identities=23% Similarity=0.403 Sum_probs=33.3
Q ss_pred CCCCceeeecCCCchHHHHHHHHHHHhHh---CCeEEEEeccccC
Q 003253 63 TVNPRILLSGPAGSEIYQEMLAKALAHYF---GAKLLIFDSHSLL 104 (836)
Q Consensus 63 ~~~~~iLl~gp~g~e~y~~~l~kala~~~---~~~ll~~d~~~~~ 104 (836)
.....|||+||+|| ++++||+|+++.. +.+++.++...+.
T Consensus 23 ~~~~~vLi~Ge~Gt--GKt~lAr~i~~~~~~~~~~~v~v~~~~~~ 65 (304)
T 1ojl_A 23 PSDATVLIHGDSGT--GKELVARALHACSARSDRPLVTLNCAALN 65 (304)
T ss_dssp STTSCEEEESCTTS--CHHHHHHHHHHHSSCSSSCCCEEECSSCC
T ss_pred CCCCcEEEECCCCc--hHHHHHHHHHHhCcccCCCeEEEeCCCCC
Confidence 45678999999999 9999999999965 6788888876543
No 186
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.19 E-value=0.0011 Score=73.28 Aligned_cols=76 Identities=26% Similarity=0.335 Sum_probs=50.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhc----cc------------ccHHHHHHHHHHHHhc
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG------------EGEKYVKAVFSLASKI 627 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~----~g------------~~e~~i~~lf~~A~~~ 627 (836)
.+..-++|+||||+|||+||..+|... +.+++.++...-.... .| ..+..+..+-..++..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 344579999999999999999998765 6677777764421111 11 1122333333334456
Q ss_pred CCceEEEccchhhhc
Q 003253 628 APSVIFVDEVDSMLG 642 (836)
Q Consensus 628 ~psIL~IDEID~L~~ 642 (836)
.+.+|+||.+..|.+
T Consensus 152 ~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 152 AIDVVVVDSVAALTP 166 (366)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCEEEEeChHHhcc
Confidence 789999999999974
No 187
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.18 E-value=0.001 Score=78.32 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=24.4
Q ss_pred ceeeecCCCchHHHHHHHHHHHhHhCCeE
Q 003253 67 RILLSGPAGSEIYQEMLAKALAHYFGAKL 95 (836)
Q Consensus 67 ~iLl~gp~g~e~y~~~l~kala~~~~~~l 95 (836)
.|||.||||| ++++||||+|+.++...
T Consensus 329 ~vLL~GppGt--GKT~LAr~la~~~~r~~ 355 (595)
T 3f9v_A 329 HILIIGDPGT--AKSQMLQFISRVAPRAV 355 (595)
T ss_dssp CEEEEESSCC--THHHHHHSSSTTCSCEE
T ss_pred ceEEECCCch--HHHHHHHHHHHhCCCce
Confidence 7999999999 99999999999987653
No 188
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.17 E-value=0.001 Score=73.12 Aligned_cols=76 Identities=25% Similarity=0.258 Sum_probs=50.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh----------------cccccHHHHHHHHHHHHhc
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WFGEGEKYVKAVFSLASKI 627 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~----------------~~g~~e~~i~~lf~~A~~~ 627 (836)
.+..-++|+||||+|||+|+..++..+ +.++++++....... .....+..+..+-...+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 344578999999999999999998775 566777776542110 0011223333333334456
Q ss_pred CCceEEEccchhhhc
Q 003253 628 APSVIFVDEVDSMLG 642 (836)
Q Consensus 628 ~psIL~IDEID~L~~ 642 (836)
.+.+++||.+..+++
T Consensus 139 ~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 139 VVDLIVVDSVAALVP 153 (356)
T ss_dssp CCSEEEEECTTTCCC
T ss_pred CCCeEEehHhhhhcC
Confidence 789999999998875
No 189
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.11 E-value=0.002 Score=75.28 Aligned_cols=171 Identities=13% Similarity=0.094 Sum_probs=93.4
Q ss_pred hhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----hCC--Ccceeecccc-
Q 003253 534 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----AGA--NFINISMSSI- 605 (836)
Q Consensus 534 ~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~-----l~~--~~i~v~~s~l- 605 (836)
..++|.+...+.|.+.+... ....+-++|+||+|+|||+||..+++. ..+ .+..++.+..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 45899999999998887521 112357999999999999999998742 122 2333333221
Q ss_pred ----chh------ccc----------cc-HHHHHHHHHHHHh-cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHH
Q 003253 606 ----TSK------WFG----------EG-EKYVKAVFSLASK-IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 663 (836)
Q Consensus 606 ----~s~------~~g----------~~-e~~i~~lf~~A~~-~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ 663 (836)
... ..+ .. +.....+...... ..|.+|+||+++.. . .+
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------~----~l------ 251 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------W----VL------ 251 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------H----HH------
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------H----HH------
Confidence 000 001 11 1122222222222 26799999999743 1 11
Q ss_pred hcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccC---CCCCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcH
Q 003253 664 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMV---NLPDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 740 (836)
Q Consensus 664 ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v---~~P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg 740 (836)
..+. ....||.||........ . . ...+.+ ...+.++-.++|...+.............|++.++|..
T Consensus 252 -~~l~----~~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P- 321 (591)
T 1z6t_A 252 -KAFD----SQCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP- 321 (591)
T ss_dssp -HTTC----SSCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH-
T ss_pred -HHhc----CCCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc-
Confidence 1111 23466667765431110 0 0 112222 46788999999988775321112345678889998854
Q ss_pred HHHHHH
Q 003253 741 SDLKNL 746 (836)
Q Consensus 741 ~DL~~L 746 (836)
--|..+
T Consensus 322 Lal~~~ 327 (591)
T 1z6t_A 322 LVVSLI 327 (591)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 334433
No 190
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.10 E-value=0.0016 Score=71.53 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=49.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh----ccc------------ccHHHHHHHHHHHHhcC
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 628 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~----~~g------------~~e~~i~~lf~~A~~~~ 628 (836)
+..-++|+||||+|||+||..++... +.+++.++...-... ..| ..+..+..+...+....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 44679999999999999999998665 566666665432111 111 11223333333444567
Q ss_pred CceEEEccchhhhc
Q 003253 629 PSVIFVDEVDSMLG 642 (836)
Q Consensus 629 psIL~IDEID~L~~ 642 (836)
|.+|+||++..+..
T Consensus 140 ~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 140 LDIIVIDSVAALVP 153 (349)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcChHhhcc
Confidence 99999999999863
No 191
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.07 E-value=0.0014 Score=65.94 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 604 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~ 604 (836)
.+..-++|+||||+|||+|+..+|...+.+++.++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34457899999999999999999985577777776543
No 192
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.02 E-value=0.0031 Score=69.75 Aligned_cols=95 Identities=7% Similarity=0.164 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhhccCCCCeEEEEcCchhhhcc---CcchhhHHHHHHhcCC-----CcEEEEeeeccCCCccccCCCCC
Q 003253 273 KLLINTLFEVVFSESRSCPFILFMKDAEKSIAG---NSDSYSTFKSRLEKLP-----DKVIVIGSHTHTDNRKEKSHPGG 344 (836)
Q Consensus 273 ~~~i~~l~~~~~~~~~~~p~Ilfi~ei~~~l~~---~~~~~~~l~~~l~~l~-----g~v~vIgs~~~~d~~~~~~~~~~ 344 (836)
..+++.|.+.+.. ...|+||+|||+|.+... ..+....+...+..++ .++.||++++.++
T Consensus 123 ~~~~~~l~~~l~~--~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~---------- 190 (412)
T 1w5s_A 123 LDILKALVDNLYV--ENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVR---------- 190 (412)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETH----------
T ss_pred HHHHHHHHHHHHh--cCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEecccc----------
Confidence 3455666666553 256999999999985442 3455544444555444 6899998887553
Q ss_pred ccccccCCchhhhccccCCCccccccccCCCchhHH---HHHhhhCCceEEecCCChHHHHHHHHHhh
Q 003253 345 LLFTKFGSNQTALLDLAFPDSFGRLHDRGKEIPKAT---KLLTKLFPNKVTIHMPQDEALLASWKHQL 409 (836)
Q Consensus 345 ~~~~~~~~~~~~~~d~a~~rp~r~~~~~~~~~~~~~---~~l~~~F~~~ieI~lP~~e~rl~Ilk~~l 409 (836)
+.+ .++ ..+.++|...+.+.+++.++..++++..+
T Consensus 191 ------------~~~------------------~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 191 ------------ALS------------------YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp ------------HHH------------------HHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred ------------HHH------------------HHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHH
Confidence 110 223 44556676669999999999999998554
No 193
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.02 E-value=0.0013 Score=67.26 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCCcceeeccccch--------hcccc----------------cH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFGE----------------GE 614 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---------~~~~i~v~~s~l~s--------~~~g~----------------~e 614 (836)
+..-++|+||||+|||+|++.++... +...+.++...... ..+|. .+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 33579999999999999999999852 34566666543100 00110 01
Q ss_pred H---HHHHHHHHHHhcCCceEEEccchhhhcC
Q 003253 615 K---YVKAVFSLASKIAPSVIFVDEVDSMLGR 643 (836)
Q Consensus 615 ~---~i~~lf~~A~~~~psIL~IDEID~L~~~ 643 (836)
. .+..+...+....|.+|+||++..++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 1 1223444455568999999999988643
No 194
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.02 E-value=0.00035 Score=68.22 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=30.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 604 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~ 604 (836)
.-|+|+|+||+|||++|++|+..++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 46999999999999999999999998888766543
No 195
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.00 E-value=0.00035 Score=68.80 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=29.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
...|+|+||||||||++|+.||..++++++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357999999999999999999999998887553
No 196
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.89 E-value=0.0027 Score=65.23 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=44.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccc-------cchhccccc-----HHHHHHHHHHHHh----cCCc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS-------ITSKWFGEG-----EKYVKAVFSLASK----IAPS 630 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~-------l~s~~~g~~-----e~~i~~lf~~A~~----~~ps 630 (836)
.-++++||+|+|||+++..++..+ +..++.+.... +.+. .|-. ......++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 458899999999999999888776 55555553221 1111 1110 0112345555554 3578
Q ss_pred eEEEccchhh
Q 003253 631 VIFVDEVDSM 640 (836)
Q Consensus 631 IL~IDEID~L 640 (836)
+|+|||+..+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999876
No 197
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.86 E-value=0.0037 Score=68.78 Aligned_cols=75 Identities=25% Similarity=0.314 Sum_probs=49.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchh----ccc-----------ccHHHHHHHH-HHHHhcC
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG-----------EGEKYVKAVF-SLASKIA 628 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~----~~g-----------~~e~~i~~lf-~~A~~~~ 628 (836)
+..-++|+||||+|||+||..+|... +.+++.++....... ..| .....+..++ ..++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 44679999999999999999998765 667777776432111 011 0111222222 2334567
Q ss_pred CceEEEccchhhhc
Q 003253 629 PSVIFVDEVDSMLG 642 (836)
Q Consensus 629 psIL~IDEID~L~~ 642 (836)
+.+|+||.+..+..
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 89999999999864
No 198
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.85 E-value=0.0018 Score=84.71 Aligned_cols=77 Identities=22% Similarity=0.274 Sum_probs=55.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccchhc----cc--------ccHHHHHHHHHHHHh----
Q 003253 566 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG--------EGEKYVKAVFSLASK---- 626 (836)
Q Consensus 566 ~~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s~~----~g--------~~e~~i~~lf~~A~~---- 626 (836)
..|..-++|+|+||+|||+||..+|..+ +.++++++..+....+ +| ..+..+..++..+++
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 3455789999999999999999999877 4568888876543332 22 122234555555544
Q ss_pred cCCceEEEccchhhhc
Q 003253 627 IAPSVIFVDEVDSMLG 642 (836)
Q Consensus 627 ~~psIL~IDEID~L~~ 642 (836)
..|++||||.+..+..
T Consensus 809 ~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTP 824 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred cCCCEEEEcchhhhcc
Confidence 6899999999999975
No 199
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=96.84 E-value=0.00067 Score=58.37 Aligned_cols=48 Identities=4% Similarity=0.104 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 397 QDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 397 ~~e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
+.++|.+||+.++ ++..+..+++....+..|.||+|+||..+|.++.+
T Consensus 2 d~~~R~~Il~~~l----~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~ 49 (83)
T 3aji_B 2 DRRQKRLIFSTIT----SKMNLSEEVDLEDYVARPDKISGADINSICQESGM 49 (83)
T ss_dssp CHHHHHHHHHHHH----TTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh----CCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5789999999998 44555566766677777778777777777765554
No 200
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.82 E-value=0.0006 Score=68.29 Aligned_cols=33 Identities=39% Similarity=0.533 Sum_probs=29.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
...|+|.||||+|||+++++||..++.+++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 357999999999999999999999998876543
No 201
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.81 E-value=0.0024 Score=69.26 Aligned_cols=75 Identities=25% Similarity=0.302 Sum_probs=49.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCCcceeeccccc--h------hcccc----------------cH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSIT--S------KWFGE----------------GE 614 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---------~~~~i~v~~s~l~--s------~~~g~----------------~e 614 (836)
+..-++|+||||+|||++|..+|... +.++++++..... . ...|. .+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 44579999999999999999999875 4456667654420 0 00110 11
Q ss_pred ---HHHHHHHHHHHh-cCCceEEEccchhhhc
Q 003253 615 ---KYVKAVFSLASK-IAPSVIFVDEVDSMLG 642 (836)
Q Consensus 615 ---~~i~~lf~~A~~-~~psIL~IDEID~L~~ 642 (836)
..+..+...+.. ..+.+|+||.+..+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 123334445555 6789999999999874
No 202
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.79 E-value=0.0013 Score=65.33 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v 600 (836)
.-++++||+|+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999997776654 5544433
No 203
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.73 E-value=0.0054 Score=62.67 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
+..-++|+||||+|||+++..+|... +.+++.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 33578999999999999999887654 455555543
No 204
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.72 E-value=0.0054 Score=62.84 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVA 590 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA 590 (836)
+..-+.|.||+|+|||+|++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 33569999999999999999998
No 205
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.72 E-value=0.0066 Score=76.74 Aligned_cols=168 Identities=11% Similarity=0.066 Sum_probs=95.3
Q ss_pred hhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--CC--cceeecccc-
Q 003253 534 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--AN--FINISMSSI- 605 (836)
Q Consensus 534 ~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l---~--~~--~i~v~~s~l- 605 (836)
..++|.+...++|.+.+... ....+-+.|+|+.|+|||+||+.+++.. . ++ ++.++.+..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred ceeccHHHHHHHHHHHHhhc------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 45899999999999887521 1223568999999999999999987652 2 22 223333221
Q ss_pred -----------chhc---------ccccHHHHHHHHHHHHh--cCCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHH
Q 003253 606 -----------TSKW---------FGEGEKYVKAVFSLASK--IAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 663 (836)
Q Consensus 606 -----------~s~~---------~g~~e~~i~~lf~~A~~--~~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ 663 (836)
.... .......+...+...-. .++.+|+||+++.. . .
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------~-----------~ 250 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------W-----------V 250 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------H-----------H
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------H-----------H
Confidence 0000 00111122222222222 23789999999843 0 1
Q ss_pred hcCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCC-CCHHHHHHHHHHHHhhCCCCCcccHHHHHHHcCCCcH
Q 003253 664 WDGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNL-PDAPNRAKILQVILAKEDLSPDVDFDAIANMTDGYSG 740 (836)
Q Consensus 664 ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~-P~~~eR~~Il~~~l~~~~l~~d~dl~~LA~~t~G~sg 740 (836)
+..+. ....||.||..+...... ......+.++. .+.++-.++|.................|++.+.|..-
T Consensus 251 ~~~~~----~~~~ilvTtR~~~~~~~~--~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 251 LKAFD----NQCQILLTTRDKSVTDSV--MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp HTTTC----SSCEEEEEESSTTTTTTC--CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHH
T ss_pred HHhhc----CCCEEEEEcCCHHHHHhh--cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHH
Confidence 11221 234667777765432110 11234566765 7888989999887643332223446788999987643
No 206
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.71 E-value=0.00086 Score=64.71 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
-|+|.||||+|||++++.|+..++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998876554
No 207
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.67 E-value=0.0037 Score=68.36 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=49.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---------CCCcceeeccccch--------hccc----------------cc
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------KWFG----------------EG 613 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---------~~~~i~v~~s~l~s--------~~~g----------------~~ 613 (836)
.+..-++|+||||+|||+||..+|... +..+++++...... ...| ..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCH
Confidence 344568999999999999999999873 44566666544200 0001 01
Q ss_pred H---HHHHHHHHHHHh--cCCceEEEccchhhhcC
Q 003253 614 E---KYVKAVFSLASK--IAPSVIFVDEVDSMLGR 643 (836)
Q Consensus 614 e---~~i~~lf~~A~~--~~psIL~IDEID~L~~~ 643 (836)
+ ..+..+...+.. ..+.+|+||.+..++..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 1 112233344555 67899999999998743
No 208
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.62 E-value=0.00092 Score=65.70 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
.|+|+|+||+|||++|+.||..+|++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5999999999999999999999998876543
No 209
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.61 E-value=0.0088 Score=69.41 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=51.8
Q ss_pred CceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC--CCcHHHHhhccccccCCCCCH
Q 003253 629 PSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF--DLDEAVIRRLPRRLMVNLPDA 706 (836)
Q Consensus 629 psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~--~Ld~~l~rRf~~~I~v~~P~~ 706 (836)
+-+|+|||+..|+.... ......+..+...- ....+-+|.+|.+|. .++..++.-|...|.+...+.
T Consensus 344 ~ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~G------Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~ 412 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG-----KKVEELIARIAQKA------RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEEESCCTTHHHHTC-----HHHHHHHHHHHHHC------TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCH
T ss_pred cEEEEEeCHHHHhhhhh-----HHHHHHHHHHHHHH------hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCH
Confidence 35899999998864221 12223333333221 124578888888887 799999998988899999998
Q ss_pred HHHHHHHH
Q 003253 707 PNRAKILQ 714 (836)
Q Consensus 707 ~eR~~Il~ 714 (836)
.+...|+.
T Consensus 413 ~Dsr~ILd 420 (574)
T 2iut_A 413 IDSRTILD 420 (574)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88887774
No 210
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.59 E-value=0.001 Score=65.22 Aligned_cols=31 Identities=48% Similarity=0.861 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..|+|+|+||+|||+++++++..++++++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 5699999999999999999999998877654
No 211
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.59 E-value=0.00088 Score=65.45 Aligned_cols=29 Identities=34% Similarity=0.626 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
.|+|.||||+|||++|++||..++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999987764
No 212
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.58 E-value=0.0011 Score=64.30 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=28.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..|+|.|++|||||++++.||..+|++++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999988654
No 213
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.57 E-value=0.0012 Score=65.18 Aligned_cols=31 Identities=35% Similarity=0.470 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.-|+|.|+||+|||++++.++..++++++..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 5799999999999999999999998876553
No 214
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.56 E-value=0.0065 Score=63.26 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=31.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 605 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l 605 (836)
.+..++|.|+||+|||++|+.|+..++.+++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34679999999999999999999999876677776554
No 215
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.55 E-value=0.0038 Score=67.31 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=45.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCCcceeeccccch----hccc------------ccHHHHHHHHHH---HHh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS----KWFG------------EGEKYVKAVFSL---ASK 626 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l-----~~~~i~v~~s~l~s----~~~g------------~~e~~i~~lf~~---A~~ 626 (836)
.++|+||||+|||+|+..++... +..+++++..+-.. ..+| ..+...-.+.+. .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988876554 56677777644211 1111 112210112222 245
Q ss_pred cCCceEEEccchhhhc
Q 003253 627 IAPSVIFVDEVDSMLG 642 (836)
Q Consensus 627 ~~psIL~IDEID~L~~ 642 (836)
..|.+|+||-|..+++
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 5799999999999975
No 216
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.54 E-value=0.00086 Score=58.58 Aligned_cols=48 Identities=6% Similarity=0.041 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 397 QDEALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 397 ~~e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
|.++|.+||+.++ ++..+..+++....+..|.||+|+||..||.++.+
T Consensus 2 d~~~R~~Il~~~~----~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~ 49 (88)
T 3vlf_B 2 DLEGRANIFRIHS----KSMSVERGIRWELISRLCPNSTGAELRSVCTEAGM 49 (88)
T ss_dssp CSSHHHHHHHHHH----TTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----CCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 5678999999998 45566777888888888889888888888887766
No 217
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.51 E-value=0.0044 Score=70.50 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999877
No 218
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.49 E-value=0.0011 Score=65.46 Aligned_cols=32 Identities=41% Similarity=0.713 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-hCCCcceee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE-AGANFINIS 601 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~-l~~~~i~v~ 601 (836)
..|+|+|+||||||++++.+|.. +|++++..+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 57999999999999999999999 687776543
No 219
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.47 E-value=0.0016 Score=65.14 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..|+|.|+||+|||++|+.|+..++++++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 5699999999999999999999999876554
No 220
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.47 E-value=0.0015 Score=68.42 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeec
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISM 602 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~ 602 (836)
-++|.||||||||++|++||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58999999999999999999999988877664
No 221
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.46 E-value=0.0014 Score=66.59 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
+..|+|.|+||+|||++|+.||..++++++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 46799999999999999999999999876554
No 222
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.44 E-value=0.0058 Score=68.27 Aligned_cols=77 Identities=23% Similarity=0.270 Sum_probs=46.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhC---------CCcceeeccccch--------hcccc----------------c
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSSITS--------KWFGE----------------G 613 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l~---------~~~i~v~~s~l~s--------~~~g~----------------~ 613 (836)
.+..-++|+||||+|||+|++.++...- ...++++...... ..+|- .
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 3445799999999999999998775432 2356665543100 00110 0
Q ss_pred ---HHHHHHHHHHHHhcCCceEEEccchhhhcC
Q 003253 614 ---EKYVKAVFSLASKIAPSVIFVDEVDSMLGR 643 (836)
Q Consensus 614 ---e~~i~~lf~~A~~~~psIL~IDEID~L~~~ 643 (836)
...+..+...+....|.+|+||++-.++..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 112233334445568999999999988754
No 223
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.40 E-value=0.0016 Score=64.37 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.-|+|.|+||+|||++|+.||..++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5799999999999999999999999876544
No 224
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0015 Score=64.20 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
.-|+|.|+||||||++|+.++..++++++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 569999999999999999999999877644
No 225
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.38 E-value=0.0013 Score=63.14 Aligned_cols=29 Identities=45% Similarity=0.690 Sum_probs=25.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
-|+|.||||+|||++|+.| ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5899999999999999999 8888886654
No 226
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.37 E-value=0.0014 Score=63.38 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.|+|.|+||+|||++|+.|+..++++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 599999999999999999999999876643
No 227
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.37 E-value=0.0019 Score=62.63 Aligned_cols=30 Identities=30% Similarity=0.695 Sum_probs=26.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
..|.|+||+|+|||++++.||..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 469999999999999999999999875543
No 228
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.36 E-value=0.009 Score=59.64 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.+.|.||+|+|||++++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 229
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.35 E-value=0.026 Score=63.70 Aligned_cols=73 Identities=18% Similarity=0.135 Sum_probs=50.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch-------------------hcc-cccHHHHHHHHHHH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------------------KWF-GEGEKYVKAVFSLA 624 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s-------------------~~~-g~~e~~i~~lf~~A 624 (836)
++.-+++.|++|+|||+++..||..+ |..+..+++..+.. ... ..+...+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999877 55665555432200 001 12233456667777
Q ss_pred HhcCCceEEEccchhh
Q 003253 625 SKIAPSVIFVDEVDSM 640 (836)
Q Consensus 625 ~~~~psIL~IDEID~L 640 (836)
....+.+|+||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777899999987644
No 230
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.33 E-value=0.0062 Score=61.53 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
+..-+.|.||+|+|||+|++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 33569999999999999999999854
No 231
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.32 E-value=0.034 Score=59.82 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=45.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch-------hc-------------ccccHHHHHHHHHH
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW-------------FGEGEKYVKAVFSL 623 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s-------~~-------------~g~~e~~i~~lf~~ 623 (836)
.++.-++|.||+|+|||+++..+|..+ +..+..+++..... .| .+.....+...+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345679999999999999999999876 44444444322100 00 01111222334455
Q ss_pred HHhcCCceEEEccchh
Q 003253 624 ASKIAPSVIFVDEVDS 639 (836)
Q Consensus 624 A~~~~psIL~IDEID~ 639 (836)
+....+.+|+||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5666889999998753
No 232
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.30 E-value=0.019 Score=66.79 Aligned_cols=166 Identities=14% Similarity=0.072 Sum_probs=88.3
Q ss_pred hchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH----HhCCCc---ceeecccc----
Q 003253 537 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT----EAGANF---INISMSSI---- 605 (836)
Q Consensus 537 ~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~----~l~~~~---i~v~~s~l---- 605 (836)
+|.+..++.|.+.+... . ....+.|.|+|+.|+|||+||+.+++ .....| +.++.+..
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~-~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------C-DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 199 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------T-TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred CCchHHHHHHHHHHhcc----------c-CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCC
Confidence 48888888888877421 0 12236799999999999999999997 233222 12222221
Q ss_pred --------chhcccc------------cHHHHHHHHHHHHhc-CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHh
Q 003253 606 --------TSKWFGE------------GEKYVKAVFSLASKI-APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 664 (836)
Q Consensus 606 --------~s~~~g~------------~e~~i~~lf~~A~~~-~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~l 664 (836)
.....+. ....+...+...-.. +..+|+||+++.. . .+ .+
T Consensus 200 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~----------~---~~--~~---- 260 (549)
T 2a5y_B 200 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE----------E---TI--RW---- 260 (549)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH----------H---HH--HH----
T ss_pred HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc----------h---hh--cc----
Confidence 0000000 011122223333233 3789999999854 1 11 11
Q ss_pred cCCcccCcccEEEEeccCCCCCCcHHHHhhccccccCCCCCHHHHHHHHHHHHhhCCCCCc--ccHHHHHHHcCCCc
Q 003253 665 DGLRTKDTERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILQVILAKEDLSPD--VDFDAIANMTDGYS 739 (836)
Q Consensus 665 d~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~~~I~v~~P~~~eR~~Il~~~l~~~~l~~d--~dl~~LA~~t~G~s 739 (836)
... ....||.||........ .......+.++..+.++-.++|..........++ .....|++.+.|..
T Consensus 261 ~~~-----~gs~ilvTTR~~~v~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 261 AQE-----LRLRCLVTTRDVEISNA--ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp HHH-----TTCEEEEEESBGGGGGG--CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ccc-----CCCEEEEEcCCHHHHHH--cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 111 22356667765321110 0012245788888999999998887432221111 12456777777654
No 233
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.29 E-value=0.0024 Score=63.89 Aligned_cols=31 Identities=32% Similarity=0.601 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
+.-|+|.|++|+|||++|+.|+..+|..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3579999999999999999999999876654
No 234
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.28 E-value=0.0054 Score=64.18 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---hCCCcceeecccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSI 605 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~---l~~~~i~v~~s~l 605 (836)
.-|+|.|+||+|||++|+.|+.. .|.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 46999999999999999999998 6888775555443
No 235
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.28 E-value=0.0021 Score=61.99 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.|+|.|+||+|||++|+.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 589999999999999999999999877643
No 236
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.25 E-value=0.0057 Score=65.16 Aligned_cols=37 Identities=38% Similarity=0.502 Sum_probs=30.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 605 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l 605 (836)
+.-++|.||||+|||++|+.++..++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 4679999999999999999999998555666665433
No 237
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.22 E-value=0.0018 Score=63.59 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..|+|.|+||||||++++.||..++++++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4699999999999999999999998765543
No 238
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.21 E-value=0.0022 Score=64.77 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.|+|.||||+|||++|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999998776554
No 239
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.20 E-value=0.0022 Score=63.54 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.-|+|.|+||+|||++|+.|+..++++++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999998665543
No 240
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.20 E-value=0.0022 Score=64.69 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=26.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.|+|.||||+|||++|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999998776644
No 241
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.17 E-value=0.0021 Score=65.56 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..|+|.|+||+|||++|+.||..++.+++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5799999999999999999999998776543
No 242
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.17 E-value=0.0021 Score=62.83 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFI 598 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i 598 (836)
.-|+|.|+||+|||++|+.|+..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 56999999999999999999999998876
No 243
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.16 E-value=0.0021 Score=65.20 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..|+|.|+||+|||++|+.||..++++++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5699999999999999999999999877654
No 244
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.16 E-value=0.0024 Score=62.71 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.-|+|.|+||||||++|+.++..++++++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5799999999999999999999999766544
No 245
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.14 E-value=0.0026 Score=65.99 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
++..|+|.||||+|||++|+.|+..++++++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 446899999999999999999999998766544
No 246
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.13 E-value=0.0023 Score=65.02 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..|+|.||||+|||++++.||..++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5799999999999999999999999766543
No 247
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.13 E-value=0.028 Score=64.62 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=49.1
Q ss_pred ceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCC--CCcHHHHhhccccccCCCCCHH
Q 003253 630 SVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPF--DLDEAVIRRLPRRLMVNLPDAP 707 (836)
Q Consensus 630 sIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~--~Ld~~l~rRf~~~I~v~~P~~~ 707 (836)
-+|+|||+..++.. .......++..+...-. ...+-+|.+|.++. .++..++..|..+|.+...+..
T Consensus 299 ivlvIDE~~~ll~~-----~~~~~~~~l~~Lar~gR------a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~ 367 (512)
T 2ius_A 299 IVVLVDEFADLMMT-----VGKKVEELIARLAQKAR------AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 367 (512)
T ss_dssp EEEEEETHHHHHHH-----HHHHHHHHHHHHHHHCG------GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHH
T ss_pred EEEEEeCHHHHHhh-----hhHHHHHHHHHHHHHhh------hCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHH
Confidence 38999999887531 11122223333222111 13566777888876 6888898889888899999998
Q ss_pred HHHHHHHH
Q 003253 708 NRAKILQV 715 (836)
Q Consensus 708 eR~~Il~~ 715 (836)
+...|+..
T Consensus 368 dsr~ilg~ 375 (512)
T 2ius_A 368 DSRTILDQ 375 (512)
T ss_dssp HHHHHHSS
T ss_pred HHHHhcCC
Confidence 88888754
No 248
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.12 E-value=0.0028 Score=63.28 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=27.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
+.-|+|.|++|||||++++.|++.++++++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 35699999999999999999999998766544
No 249
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.11 E-value=0.0021 Score=63.03 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.-|+|.|+||+|||++++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999886
No 250
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.11 E-value=0.0028 Score=65.07 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..|+|.|+||+|||++|+.||..++++++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5799999999999999999999999776554
No 251
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.07 E-value=0.0081 Score=64.81 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
+..-++|+||||+|||++|..+|..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456899999999999999999976
No 252
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.07 E-value=0.0034 Score=61.00 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
..++|.||+|+|||++++.++..+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 569999999999999999999998765543
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.07 E-value=0.0022 Score=62.24 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=23.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-HhCCCcc
Q 003253 570 KGILLFGPPGTGKTMLAKAVAT-EAGANFI 598 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~-~l~~~~i 598 (836)
.-|+|.|+||+|||++|+.|+. .++..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4689999999999999999998 4554433
No 254
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.07 E-value=0.0061 Score=67.08 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=43.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCCcceeec-ccc--------ch-hcccccHHHHHHHHHHHHhcCCceEEEc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA----GANFINISM-SSI--------TS-KWFGEGEKYVKAVFSLASKIAPSVIFVD 635 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~-s~l--------~s-~~~g~~e~~i~~lf~~A~~~~psIL~ID 635 (836)
..++|.||+|+|||++.++++..+ +..++.+.- .++ +. ...+.........+..|-...|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 469999999999999999998776 233332211 111 00 0111111224456667778899999999
Q ss_pred cch
Q 003253 636 EVD 638 (836)
Q Consensus 636 EID 638 (836)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 255
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.04 E-value=0.031 Score=60.24 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=27.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
.+..-++|.|+||+|||+||..+|... +.+++.++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 344569999999999999999998665 456665554
No 256
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.03 E-value=0.0027 Score=62.54 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=29.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 604 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~ 604 (836)
...+.|.||+|+||||+++.|+...+...+.++..+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 356999999999999999999988766666666443
No 257
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.01 E-value=0.0039 Score=72.98 Aligned_cols=98 Identities=23% Similarity=0.306 Sum_probs=54.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecccc----chhcccccHHHHHHHHHHH---------HhcCCceEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TSKWFGEGEKYVKAVFSLA---------SKIAPSVIF 633 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l----~s~~~g~~e~~i~~lf~~A---------~~~~psIL~ 633 (836)
..++|+||||||||+++.+++..+ +.+++.+..+.- +....+.....+..++... ......+|+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 479999999999999999998765 555554433221 1111111111222222110 111357999
Q ss_pred EccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCC
Q 003253 634 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRP 684 (836)
Q Consensus 634 IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~ 684 (836)
|||+..+ + ...+..++..+ . ...++++++-.+..
T Consensus 285 IDEasml-----~-------~~~~~~Ll~~~---~--~~~~lilvGD~~QL 318 (574)
T 3e1s_A 285 VDEVSMM-----G-------DALMLSLLAAV---P--PGARVLLVGDTDQL 318 (574)
T ss_dssp ECCGGGC-----C-------HHHHHHHHTTS---C--TTCEEEEEECTTSC
T ss_pred EcCccCC-----C-------HHHHHHHHHhC---c--CCCEEEEEeccccc
Confidence 9999876 1 12333443322 2 34678888877653
No 258
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.96 E-value=0.026 Score=59.45 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
+..-++|+||+|+|||+|+..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33569999999999999999998654
No 259
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.96 E-value=0.0041 Score=63.65 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=28.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 605 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l 605 (836)
++-|+|.||||+||+|.|+.||+.++++. ++..++
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdl 63 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDL 63 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHH
Confidence 36789999999999999999999998654 444444
No 260
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.93 E-value=0.0037 Score=63.17 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=26.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.|+|.|+||+|||++|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998776554
No 261
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.90 E-value=0.0049 Score=61.61 Aligned_cols=31 Identities=39% Similarity=0.758 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCCcc
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAGANFI 598 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~~~~i 598 (836)
+..-+.|.||+|+|||++++.|+..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3457999999999999999999999975443
No 262
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.89 E-value=0.025 Score=57.70 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=26.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHH----hCCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATE----AGANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~----l~~~~i~v~~ 602 (836)
.+..-++|+|+||+|||++|..+|.. .+.+++.++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 34456999999999999999987643 2566666554
No 263
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.88 E-value=0.013 Score=64.16 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
+..-+.|+||+|+|||+|++.++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999999886
No 264
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.88 E-value=0.0059 Score=64.17 Aligned_cols=69 Identities=28% Similarity=0.390 Sum_probs=41.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CCcceeec--ccc-------ch-hcccccHHHHHHHHHHHHhcCCceEEEc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISM--SSI-------TS-KWFGEGEKYVKAVFSLASKIAPSVIFVD 635 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~----~~~i~v~~--s~l-------~s-~~~g~~e~~i~~lf~~A~~~~psIL~ID 635 (836)
..++|.||+|+|||+++++++..+. ..++.... ..+ +. ..+|.....++..+..+-...|.+|++|
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 5699999999999999999997652 12211110 000 00 0111111223555666666789999999
Q ss_pred cch
Q 003253 636 EVD 638 (836)
Q Consensus 636 EID 638 (836)
|.-
T Consensus 106 Ep~ 108 (261)
T 2eyu_A 106 EMR 108 (261)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 265
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.86 E-value=0.0054 Score=60.22 Aligned_cols=31 Identities=29% Similarity=0.158 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCCcceee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA---GANFINIS 601 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~ 601 (836)
-|.|.|++|+|||++++.++..+ |++++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 88887664
No 266
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.86 E-value=0.0044 Score=62.81 Aligned_cols=33 Identities=42% Similarity=0.653 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 605 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l 605 (836)
.|+|.||||+||+|.|+.||+.+|++. ++..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence 488999999999999999999998765 444444
No 267
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.82 E-value=0.0067 Score=59.28 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=30.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 604 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~ 604 (836)
...+.|.|++|+|||++++.++..+ |.+++.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3568999999999999999999988 88988877543
No 268
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.78 E-value=0.033 Score=59.09 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
+..-++|.||||+|||+|++.+|..+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33568999999999999999998765
No 269
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.78 E-value=0.049 Score=61.30 Aligned_cols=73 Identities=21% Similarity=0.127 Sum_probs=46.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc----------hhcc---------c-ccHHHHHHHHHHH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------SKWF---------G-EGEKYVKAVFSLA 624 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~----------s~~~---------g-~~e~~i~~lf~~A 624 (836)
++.-+++.||+|+|||+++..+|..+ |..+..+++..+. .... + .+..........+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45779999999999999999999776 5666555543210 0000 1 1122234445555
Q ss_pred HhcCCceEEEccchhh
Q 003253 625 SKIAPSVIFVDEVDSM 640 (836)
Q Consensus 625 ~~~~psIL~IDEID~L 640 (836)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567899999988654
No 270
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.78 E-value=0.02 Score=65.01 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~ 602 (836)
.+..-++|.|+||+|||+|+..+|... |.+++.++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 344569999999999999999998754 556666654
No 271
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.69 E-value=0.0051 Score=66.61 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=30.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeecc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 603 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s 603 (836)
..++|+||+|+|||++|+.||..++..++.++.-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4699999999999999999999999888887654
No 272
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.63 E-value=0.018 Score=59.43 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeecc
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 603 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s 603 (836)
.++++||+|+|||.+|.+++..++.+++.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 599999999999999999998887766665543
No 273
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.63 E-value=0.0058 Score=60.54 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
.|.|.|++|+||||+++.|++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48999999999999999999999986654
No 274
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.61 E-value=0.0069 Score=61.35 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
..|.|.||+|+||||+++.|+..+|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 469999999999999999999999876543
No 275
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.61 E-value=0.0055 Score=61.31 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
+.-|+|.|++|||||++++.|+..++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 35799999999999999999999987655544
No 276
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.60 E-value=0.055 Score=61.14 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~ 602 (836)
.+..-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 344568999999999999999988654 556766654
No 277
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.60 E-value=0.0048 Score=61.58 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=25.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
.|.|.|++|+|||++++.|+. +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 887665543
No 278
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.59 E-value=0.0064 Score=66.57 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
.+++|.||+|+|||+++++||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 479999999999999999999999988855
No 279
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.58 E-value=0.0054 Score=65.92 Aligned_cols=37 Identities=32% Similarity=0.481 Sum_probs=31.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcceeecccc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 605 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~l 605 (836)
+.-++|.||+|+|||+||..+|+.++..++..+.-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 3568999999999999999999999988887776554
No 280
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.58 E-value=0.0064 Score=62.03 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.|+|.|+||+|||++|+.|+..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999998765443
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.55 E-value=0.0042 Score=60.87 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CCcceeec
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAG---ANFINISM 602 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~---~~~i~v~~ 602 (836)
-|+|.|+||+|||++|+.|+..++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 589999999999999999999885 33444443
No 282
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.54 E-value=0.0083 Score=59.14 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCCcceee
Q 003253 572 ILLFGPPGTGKTMLAKAVATEA---GANFINIS 601 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~ 601 (836)
|.|.|++||||||+++.++..+ |++++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88887554
No 283
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.52 E-value=0.0087 Score=59.77 Aligned_cols=37 Identities=24% Similarity=0.201 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccc
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 604 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~ 604 (836)
+..-+.|.||+|+|||+++++||..+ |...+.++...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 34579999999999999999999988 44434555433
No 284
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.50 E-value=0.0063 Score=60.34 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=25.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
+..|.|.|++|||||++++.||.. |++++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 467999999999999999999998 766554
No 285
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.47 E-value=0.0074 Score=59.94 Aligned_cols=32 Identities=16% Similarity=0.164 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCCcceee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA-GANFINIS 601 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l-~~~~i~v~ 601 (836)
.-|.|.|++|+|||++++.|+..+ |.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 569999999999999999999998 57766654
No 286
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.46 E-value=0.0069 Score=60.64 Aligned_cols=30 Identities=20% Similarity=0.123 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
.-|+|.|++|+|||++++.|+..++...+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~ 39 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHR 39 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 579999999999999999999987544433
No 287
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.44 E-value=0.0086 Score=59.59 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
.|.|.|++|+|||++++.+|..+|++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6899999999999999999999997776543
No 288
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.40 E-value=0.011 Score=61.24 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=30.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcc--------eeeccccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSIT 606 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i--------~v~~s~l~ 606 (836)
.-|.|.|++|||||++|+.|+..++++++ .+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 57999999999999999999999998753 46665554
No 289
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.39 E-value=0.04 Score=54.78 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..+++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999888777653
No 290
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.35 E-value=0.011 Score=60.93 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=26.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFI 598 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i 598 (836)
+..+.|.||+|+||||+++.|+..+|...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999999987544
No 291
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.33 E-value=0.0074 Score=60.43 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
.|.|+|++|||||++++.++..+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4889999999999999999999898776543
No 292
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.33 E-value=0.027 Score=54.81 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=17.2
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKA 588 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~a 588 (836)
.-+.|.||+|+|||+|+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4689999999999999994
No 293
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.29 E-value=0.01 Score=61.29 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
..+.|.||+|+|||++++.||..++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 579999999999999999999999876643
No 294
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.29 E-value=0.081 Score=53.02 Aligned_cols=114 Identities=16% Similarity=0.164 Sum_probs=65.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecc---------ccchhc-----------cc-c-----cHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS---------SITSKW-----------FG-E-----GEKYVKAV 620 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s---------~l~s~~-----------~g-~-----~e~~i~~l 620 (836)
..|++|+++|.|||++|-++|..+ |..+..+..- .+...+ .- . .+......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 469999999999999999998766 6665554221 122221 00 0 12344555
Q ss_pred HHHHHhc----CCceEEEccchhhhcCCCCCchHHHHHHHHHHHHHHhcCCcccCcccEEEEeccCCCCCCcHHHHhhcc
Q 003253 621 FSLASKI----APSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERILVLAATNRPFDLDEAVIRRLP 696 (836)
Q Consensus 621 f~~A~~~----~psIL~IDEID~L~~~r~~~~~~~~~~~il~~ll~~ld~~~~~~~~~vlVIaTTn~~~~Ld~~l~rRf~ 696 (836)
+..+.+. ...+|+|||+-..+.-..-+ . .. ++..+.. .+.+.-||.|+|.+ +++++..-|
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~-~----~e----v~~~l~~----Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP-L----EE----VISALNA----RPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC-H----HH----HHHHHHT----SCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC-H----HH----HHHHHHh----CcCCCEEEEECCCC---cHHHHHhCc
Confidence 6666554 47899999997653322111 1 12 2222322 23456778888864 567777555
Q ss_pred ccc
Q 003253 697 RRL 699 (836)
Q Consensus 697 ~~I 699 (836)
.+-
T Consensus 173 ~VT 175 (196)
T 1g5t_A 173 TVS 175 (196)
T ss_dssp EEE
T ss_pred cee
Confidence 443
No 295
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=95.26 E-value=0.0023 Score=54.98 Aligned_cols=46 Identities=2% Similarity=-0.041 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhHhhhhhhhccCCchhHHHHhhccCCCcCchhhhhhhccc
Q 003253 399 EALLASWKHQLDRDSETLKMKGNLNHLRTVLGRSGLECEGLETLCIRDQS 448 (836)
Q Consensus 399 e~rl~Ilk~~l~e~~~~~~~~~n~~~i~~~l~t~g~s~~DL~~Lc~~~~~ 448 (836)
++|.+||+.++. +..+..+++....+..+.||+|+||..+|.++.+
T Consensus 1 ~~R~~Il~~~l~----~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~ 46 (82)
T 2dzn_B 1 MERRLIFGTIAS----KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGL 46 (82)
T ss_dssp -----------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----CCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 479999999984 4455556666666667777777777777765554
No 296
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.24 E-value=0.011 Score=58.75 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=24.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGAN 596 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~ 596 (836)
.-|+|.|+||+|||++|+.|+..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 468999999999999999999998764
No 297
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.21 E-value=0.0071 Score=65.80 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=29.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeecc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 603 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s 603 (836)
.-|+|.||+|+|||+|+..||+.++..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4699999999999999999999999887776654
No 298
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.19 E-value=0.0092 Score=59.62 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
.+.|.||+|+|||++++.++. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 588999999999999999998 7776653
No 299
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.19 E-value=0.06 Score=61.74 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~ 602 (836)
.+..-++|.|+||+|||+||..+|... |.+++.++.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 344568999999999999999998765 446666654
No 300
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.14 E-value=0.072 Score=60.26 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
.+..-++|.|+||+|||++|..+|... |.++..++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 344569999999999999999998765 566666654
No 301
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.12 E-value=0.011 Score=61.69 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
..|.|.|++|+|||++++.||..++++|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46999999999999999999999998876643
No 302
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.10 E-value=0.014 Score=60.72 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFI 598 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i 598 (836)
...|.|.||+|+|||++++.||..+|++++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 356999999999999999999999998654
No 303
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.08 E-value=0.011 Score=65.32 Aligned_cols=71 Identities=27% Similarity=0.360 Sum_probs=42.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CCcceeecc-cc--------chh-cccccHHHHHHHHHHHHhcCCceEE
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SI--------TSK-WFGEGEKYVKAVFSLASKIAPSVIF 633 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~----~~~i~v~~s-~l--------~s~-~~g~~e~~i~~lf~~A~~~~psIL~ 633 (836)
+...++|.||+|+|||+++++++..+. ..++.+... ++ +.. .+|.....+...+..+-...|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 335699999999999999999998652 222222211 00 100 0111111234455566667899999
Q ss_pred Eccch
Q 003253 634 VDEVD 638 (836)
Q Consensus 634 IDEID 638 (836)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99984
No 304
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.01 E-value=0.073 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=17.3
Q ss_pred ceEEEEcCCCChHHHHHH-HHHHH
Q 003253 570 KGILLFGPPGTGKTMLAK-AVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~-alA~~ 592 (836)
+.+++.+|+|+|||..+- .+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 469999999999998643 33343
No 305
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.93 E-value=0.018 Score=56.46 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
+..-++|.|++|+|||++++.++..+ +.+++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 34579999999999999999999887 444555554
No 306
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.93 E-value=0.012 Score=63.92 Aligned_cols=69 Identities=22% Similarity=0.348 Sum_probs=44.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--Ccceeeccc-cc----hh---cccccHHHHHHHHHHHHhcCCceEEEccch
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSS-IT----SK---WFGEGEKYVKAVFSLASKIAPSVIFVDEVD 638 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~--~~i~v~~s~-l~----s~---~~g~~e~~i~~lf~~A~~~~psIL~IDEID 638 (836)
..++|.||+|+|||+|+++++..... ..+.+.... +. .. ++.......+..+..|-...|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 46999999999999999999987632 233333211 10 00 110011234555666667789999999976
No 307
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.77 E-value=0.11 Score=55.36 Aligned_cols=35 Identities=31% Similarity=0.400 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCCcceeec
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 602 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~ 602 (836)
++..++|.||+|+|||+++..+|..+ |..+..+++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 44679999999999999999998765 445555544
No 308
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.76 E-value=0.021 Score=56.71 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=53.4
Q ss_pred HHHHHHcccCCCccccccccccccccchhHHHHHHHHHHhccCCcccccccccccCCCCceeeecCCCchHHHHHHHHHH
Q 003253 8 FREDILAGILDGTNLQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELTTVNPRILLSGPAGSEIYQEMLAKAL 87 (836)
Q Consensus 8 ~~~~~~~~v~~~~~~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~~~~~~iLl~gp~g~e~y~~~l~kal 87 (836)
.+..++..-++++--..|||+|-+. +.+.+.++..+. -.+.. +... ..++.|||+||+|| ++++||+|+
T Consensus 6 ~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~-~~~~~-----~~~~--~~~~~~~l~G~~Gt--GKT~la~~i 74 (202)
T 2w58_A 6 QESLIQSMFMPREILRASLSDVDLN-DDGRIKAIRFAE-RFVAE-----YEPG--KKMKGLYLHGSFGV--GKTYLLAAI 74 (202)
T ss_dssp HHHHEEEESSCGGGGCCCTTSSCCS-SHHHHHHHHHHH-HHHHH-----CCSS--CCCCEEEEECSTTS--SHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHcCCHhhccCC-ChhHHHHHHHHH-HHHHH-----hhhc--cCCCeEEEECCCCC--CHHHHHHHH
Confidence 3455666667766677899998765 223333333221 11111 1000 01378999999999 999999999
Q ss_pred HhHh---CCeEEEEecccc
Q 003253 88 AHYF---GAKLLIFDSHSL 103 (836)
Q Consensus 88 a~~~---~~~ll~~d~~~~ 103 (836)
|+++ +.+++.++...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 75 ANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp HHHHHTTTCCEEEEEHHHH
T ss_pred HHHHHHcCCeEEEEEhHHH
Confidence 9988 667777765443
No 309
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.75 E-value=0.077 Score=59.52 Aligned_cols=93 Identities=19% Similarity=0.343 Sum_probs=51.3
Q ss_pred ccchhhhchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---Ccceeecc-ccc
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISMS-SIT 606 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l~~---~~i~v~~s-~l~ 606 (836)
.++++++-.......|...+. .+..-++|.||+|+||||+.++++..+.. .++.+.-+ ++.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~---------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK---------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT---------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCHHHcCCCHHHHHHHHHHHH---------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 456666554444445554421 22245899999999999999999998743 22222111 110
Q ss_pred -h----hccccc-HHHHHHHHHHHHhcCCceEEEccch
Q 003253 607 -S----KWFGEG-EKYVKAVFSLASKIAPSVIFVDEVD 638 (836)
Q Consensus 607 -s----~~~g~~-e~~i~~lf~~A~~~~psIL~IDEID 638 (836)
. ..+... ..........+-+..|.++++.|+.
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 000100 0112333444555688999999853
No 310
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.71 E-value=0.028 Score=63.06 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
+.-|+|+|+||+|||++|+.++..+++.++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~ 289 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNR 289 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEcc
Confidence 45699999999999999999999988766553
No 311
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.70 E-value=0.017 Score=57.84 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.-++|.||||+|||++++.|+..++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 5699999999999999999999874
No 312
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.68 E-value=0.016 Score=58.51 Aligned_cols=30 Identities=37% Similarity=0.469 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
.-|.|.|++|+|||++++.|+. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4689999999999999999998 87766543
No 313
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.68 E-value=0.021 Score=58.57 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=27.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
...|.|.|++|+|||++++.||..+|++++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3579999999999999999999999977654
No 314
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.65 E-value=0.014 Score=63.59 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeec
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 602 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~ 602 (836)
.-|+|.||+|+|||++|..||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 368999999999999999999999866655543
No 315
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.62 E-value=0.016 Score=58.45 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..|.|.|++|+|||++++.++..+|++++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4699999999999999999999999776554
No 316
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.59 E-value=0.016 Score=61.46 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=26.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
+.-|.|+|++|||||++|+.|+ .+|++++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3569999999999999999999 678766543
No 317
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.55 E-value=0.016 Score=62.42 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeecc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 603 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s 603 (836)
.-|+|.||+|+|||+||..+|..++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 3588999999999999999999998777666544
No 318
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=94.50 E-value=0.099 Score=57.94 Aligned_cols=44 Identities=14% Similarity=0.312 Sum_probs=35.5
Q ss_pred cccCCCCceeeecCCCchHHHHHHHHHHHhHhC---CeEEEEeccccCC
Q 003253 60 ELTTVNPRILLSGPAGSEIYQEMLAKALAHYFG---AKLLIFDSHSLLG 105 (836)
Q Consensus 60 ~l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~---~~ll~~d~~~~~~ 105 (836)
.+....-.||++|++|| .++++|+++.+... .+|+.+|...+..
T Consensus 155 ~~a~~~~~vli~Ge~Gt--GK~~lAr~ih~~s~r~~~~fv~v~~~~~~~ 201 (387)
T 1ny5_A 155 KISCAECPVLITGESGV--GKEVVARLIHKLSDRSKEPFVALNVASIPR 201 (387)
T ss_dssp HHTTCCSCEEEECSTTS--SHHHHHHHHHHHSTTTTSCEEEEETTTSCH
T ss_pred HhcCCCCCeEEecCCCc--CHHHHHHHHHHhcCCCCCCeEEEecCCCCH
Confidence 34556677999999999 89999999988765 7899999765543
No 319
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.50 E-value=0.013 Score=62.10 Aligned_cols=31 Identities=39% Similarity=0.503 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA-GANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l-~~~~i~v 600 (836)
.-|+|.|+||+|||++|+.|+..+ ++.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 468999999999999999999974 6555433
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.48 E-value=0.013 Score=58.62 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=25.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCCcce
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA-GANFIN 599 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l-~~~~i~ 599 (836)
..-+.|.|++|+|||++++.|+..+ ++.++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 3568999999999999999999877 554443
No 321
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.44 E-value=0.053 Score=63.87 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
+.++++|+||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999888876554
No 322
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.36 E-value=0.088 Score=52.89 Aligned_cols=60 Identities=22% Similarity=0.178 Sum_probs=34.3
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcC--CCCCCCceEEEEcCCCChHHHH-HHHHHHH
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKG--QLTKPCKGILLFGPPGTGKTML-AKAVATE 592 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~--~~~~p~~~vLL~GPpGtGKT~L-A~alA~~ 592 (836)
..+|+++.-.+.+.+.+...-. ..+..+... ......+.+++.+|+|+|||.. +-.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGF---EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTC---CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 4578888877888777766421 111111110 0000114699999999999986 3333333
No 323
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.35 E-value=0.023 Score=57.15 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
-|.|.|++|||||++++.||..+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 69999999999999999999999999884
No 324
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.27 E-value=0.11 Score=64.29 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=33.7
Q ss_pred hchHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 003253 537 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 537 ~G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
+|.+...+.|.+.+.. . .+.+-+.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~----------~---d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE----------L---RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH----------C---CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc----------c---CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 7888888888887752 0 12357999999999999999999864
No 325
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.26 E-value=0.16 Score=55.81 Aligned_cols=43 Identities=21% Similarity=0.471 Sum_probs=35.5
Q ss_pred ccCCCCceeeecCCCchHHHHHHHHHHHhHhCCe--EEEEeccccCC
Q 003253 61 LTTVNPRILLSGPAGSEIYQEMLAKALAHYFGAK--LLIFDSHSLLG 105 (836)
Q Consensus 61 l~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~--ll~~d~~~~~~ 105 (836)
+......||+.|++|| +++++|+++.+..+-. |+.+|...+..
T Consensus 148 ~a~~~~~vli~GesGt--GKe~lAr~ih~~s~r~~~fv~vnc~~~~~ 192 (368)
T 3dzd_A 148 IAKSKAPVLITGESGT--GKEIVARLIHRYSGRKGAFVDLNCASIPQ 192 (368)
T ss_dssp HHTSCSCEEEECCTTS--SHHHHHHHHHHHHCCCSCEEEEESSSSCT
T ss_pred hhccchhheEEeCCCc--hHHHHHHHHHHhccccCCcEEEEcccCCh
Confidence 4556677999999999 8999999999887654 99999876654
No 326
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.23 E-value=0.023 Score=63.17 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceeec
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 602 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~ 602 (836)
.-|+|.||+|+|||+||..||..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 468999999999999999999999876665543
No 327
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.16 E-value=0.087 Score=56.57 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=19.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..+++.+|+|+|||..+-..+...
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 579999999999999766555443
No 328
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.15 E-value=0.03 Score=56.30 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=28.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCCcceeeccc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 604 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~s~ 604 (836)
..-++|.|++|+|||++++.|+..+ |.+++.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3568999999999999999999876 45666666433
No 329
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.11 E-value=0.11 Score=52.90 Aligned_cols=55 Identities=22% Similarity=0.155 Sum_probs=31.7
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcC--CCCCCCceEEEEcCCCChHHHHHH
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKG--QLTKPCKGILLFGPPGTGKTMLAK 587 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~--~~~~p~~~vLL~GPpGtGKT~LA~ 587 (836)
..+|+++.-.+.+.+.|.+.- ...+..+... ......+.+++.+|+|+|||..+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 356888877777777776532 1111111110 000011579999999999998543
No 330
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.10 E-value=0.03 Score=54.87 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.-+.|.||+|+|||+|++.|+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998763
No 331
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.03 E-value=0.74 Score=49.00 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=31.3
Q ss_pred CceeeecCCCchHHHHHHHHHHHhHhCCeEEEEecccc
Q 003253 66 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSL 103 (836)
Q Consensus 66 ~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~~ 103 (836)
+-|+++||+|+ ++++|+++++++.+.+.+.++....
T Consensus 31 ~~v~i~G~~G~--GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 31 PITLVLGLRRT--GKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp SEEEEEESTTS--SHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CcEEEECCCCC--CHHHHHHHHHHhcCCCEEEEEchhh
Confidence 68999999998 9999999999999888788886543
No 332
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.03 E-value=0.026 Score=56.71 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
+..-+.|.||+|+|||++++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 335689999999999999999998874
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.02 E-value=0.031 Score=55.37 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=22.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||+|+|||++++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999876
No 334
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.00 E-value=0.1 Score=52.03 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 603 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s 603 (836)
+.-+.|.|++|+|||++++.++..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3569999999999999999999876 5565555433
No 335
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.99 E-value=0.18 Score=58.25 Aligned_cols=74 Identities=22% Similarity=0.243 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecccc----chh---------------ccc---------ccHHH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TSK---------------WFG---------EGEKY 616 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l----~s~---------------~~g---------~~e~~ 616 (836)
+...++|.||+|+|||+|++.++... |.+++.+...+- ... ... .....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~ 359 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH 359 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHH
Confidence 33569999999999999999998765 444444433211 000 000 12334
Q ss_pred HHHHHHHHHhcCCceEEEccchhhh
Q 003253 617 VKAVFSLASKIAPSVIFVDEVDSML 641 (836)
Q Consensus 617 i~~lf~~A~~~~psIL~IDEID~L~ 641 (836)
.+.++..+....|.+|+||-+..+.
T Consensus 360 q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 360 LQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHhhCCCEEEEcChHHHH
Confidence 5556667777889999999777663
No 336
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.96 E-value=0.3 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
++.-++|.||+|+|||++++.||..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34578999999999999999999876
No 337
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.91 E-value=0.028 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
-++|.||+|+|||++++.|+...+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999998654
No 338
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.88 E-value=0.027 Score=56.37 Aligned_cols=27 Identities=37% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
++.-+.|.||+|+|||||++.|+..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 335689999999999999999999887
No 339
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.84 E-value=0.021 Score=57.49 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=28.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCCcceeeccc
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 604 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~ 604 (836)
..+++|.||+|+|||+||.+++.... .++..+.-.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~ 68 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD 68 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence 36799999999999999999998865 665555433
No 340
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.78 E-value=0.038 Score=54.70 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||+|+||||+++.|+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458899999999999999999885
No 341
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.70 E-value=0.039 Score=54.94 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.|+|.||+|+|||+|++.|.....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 499999999999999999988764
No 342
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.67 E-value=0.094 Score=60.52 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFI 598 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i 598 (836)
.-|+|+|.||+|||++|+.||..++..++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~ 64 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGV 64 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 46899999999999999999999855443
No 343
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.63 E-value=0.2 Score=51.14 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.4
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVA 590 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA 590 (836)
..+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 479999999999998666554
No 344
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.57 E-value=0.043 Score=63.18 Aligned_cols=69 Identities=28% Similarity=0.413 Sum_probs=43.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CCcceeeccc-cch---hc--------ccccHHHHHHHHHHHHhcCCceEEEc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITS---KW--------FGEGEKYVKAVFSLASKIAPSVIFVD 635 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~--~~~i~v~~s~-l~s---~~--------~g~~e~~i~~lf~~A~~~~psIL~ID 635 (836)
..++|.||+|+||||++++++..+. ...+.+.... +.- .+ .+.....+..+...+-+..|.+|++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999998773 2333433221 110 00 01111123445555667789999999
Q ss_pred cch
Q 003253 636 EVD 638 (836)
Q Consensus 636 EID 638 (836)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 974
No 345
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.55 E-value=0.11 Score=52.13 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHH-HHHHHHHHHh--CCCcceeec
Q 003253 570 KGILLFGPPGTGKT-MLAKAVATEA--GANFINISM 602 (836)
Q Consensus 570 ~~vLL~GPpGtGKT-~LA~alA~~l--~~~~i~v~~ 602 (836)
.=.++|||.|+||| .|.+++.+.. +..++.+.+
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 45799999999999 7999887755 666666653
No 346
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.53 E-value=0.039 Score=55.36 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
+..-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345689999999999999999998874
No 347
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.45 E-value=0.24 Score=58.69 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHhccccChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 538 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 538 G~~~vk~~L~~~v~~~l~~~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
-.+..++.+...+.. + .-.||+||||||||+++-.+...+
T Consensus 190 LN~~Q~~AV~~al~~--------------~--~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQ--------------K--ELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CCHHHHHHHHHHHHC--------------S--SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcC--------------C--CceEEECCCCCCHHHHHHHHHHHH
Confidence 356667777665541 1 147999999999998555544433
No 348
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.40 E-value=0.14 Score=58.68 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc-------------------hhccc-ccHHHHHHHHHHH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------------------SKWFG-EGEKYVKAVFSLA 624 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~-------------------s~~~g-~~e~~i~~lf~~A 624 (836)
++..|+|+|++|+|||+++..||..+ |..+..+++.... ....+ .+...+...+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999776 6666555552110 00001 1112223444555
Q ss_pred HhcCCceEEEccchhh
Q 003253 625 SKIAPSVIFVDEVDSM 640 (836)
Q Consensus 625 ~~~~psIL~IDEID~L 640 (836)
......++|||-...+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 4456689999976644
No 349
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.34 E-value=0.18 Score=50.88 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=30.2
Q ss_pred CCcccchh-hhchHHHHHHHHHHHhccccChhhhhcCC--CCCCCceEEEEcCCCChHHHHHH
Q 003253 528 DIGVTFDD-IGALENVKDTLKELVMLPLQRPELFCKGQ--LTKPCKGILLFGPPGTGKTMLAK 587 (836)
Q Consensus 528 ~~~~~~~d-i~G~~~vk~~L~~~v~~~l~~~e~~~~~~--~~~p~~~vLL~GPpGtGKT~LA~ 587 (836)
.+..+|.+ +.-...+.+.|.+.-. ..+..+.... .....+.+++.+|+|+|||..+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIRVGI---LKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHHHTC---CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHHCCC---CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 34567777 4444566666655321 1111111100 00011479999999999998543
No 350
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.34 E-value=0.17 Score=57.03 Aligned_cols=72 Identities=21% Similarity=0.231 Sum_probs=46.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCCcceeeccccchh----------------cc---c-ccHHHHHHHHH
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK----------------WF---G-EGEKYVKAVFS 622 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~s~l~s~----------------~~---g-~~e~~i~~lf~ 622 (836)
.++..|++.|++|+|||+++..||..+ |..+..+++...... +. + .+...+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345789999999999999999998765 666666665432110 00 0 11222355566
Q ss_pred HHHhcCCceEEEccch
Q 003253 623 LASKIAPSVIFVDEVD 638 (836)
Q Consensus 623 ~A~~~~psIL~IDEID 638 (836)
.+......+++||=..
T Consensus 178 ~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEECCC
Confidence 6665567899998754
No 351
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.30 E-value=0.044 Score=54.70 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
..+.|.||+|+|||+|++.|+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5699999999999999999998763
No 352
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.22 E-value=0.089 Score=52.49 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=40.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeecc--------ccchhccccc-----HHHHHHHHHHHHhcCCceEE
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS--------SITSKWFGEG-----EKYVKAVFSLASKIAPSVIF 633 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s--------~l~s~~~g~~-----e~~i~~lf~~A~~~~psIL~ 633 (836)
.-.+++||+|+|||+.+..++..+ +..+..+.+. .+.+. .|.. -.....++..+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 458999999999999888888776 5555544311 11111 1110 0001234443332 358999
Q ss_pred Eccchhh
Q 003253 634 VDEVDSM 640 (836)
Q Consensus 634 IDEID~L 640 (836)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999876
No 353
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.19 E-value=0.04 Score=54.55 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCCcceeeccc
Q 003253 572 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 604 (836)
Q Consensus 572 vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s~ 604 (836)
+|++|++|||||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999987 88888877654
No 354
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.18 E-value=0.047 Score=53.68 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.-+.|.||+|+|||++++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998763
No 355
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.17 E-value=0.18 Score=54.72 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
++.-+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999999876
No 356
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.16 E-value=0.11 Score=51.26 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAK 587 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~ 587 (836)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 479999999999997544
No 357
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=93.15 E-value=0.12 Score=52.72 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=31.3
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcCC--CCCCCceEEEEcCCCChHHHHHH
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQ--LTKPCKGILLFGPPGTGKTMLAK 587 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~--~~~p~~~vLL~GPpGtGKT~LA~ 587 (836)
..+|+++.-.+.+.+.|...=. ..+..+.... .....+.+++.+|+|+|||..+-
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~---~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGF---EKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTC---CSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCC---CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 4568888777777777765321 1111111100 00011469999999999997643
No 358
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.87 E-value=0.31 Score=51.95 Aligned_cols=72 Identities=21% Similarity=0.057 Sum_probs=45.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch-------------------hccc-ccHHHHHHHHHHHH
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------------------KWFG-EGEKYVKAVFSLAS 625 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s-------------------~~~g-~~e~~i~~lf~~A~ 625 (836)
+..+++.|++|+|||+++..+|..+ +..+..+++..... ...+ .+...+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999776 55555555431100 0001 12223345566665
Q ss_pred hcCCceEEEccchhh
Q 003253 626 KIAPSVIFVDEVDSM 640 (836)
Q Consensus 626 ~~~psIL~IDEID~L 640 (836)
.....+|+||=...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 556789999975433
No 359
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.83 E-value=0.054 Score=55.46 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcce
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFIN 599 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~ 599 (836)
.-|.|.|++|||||++|+.||..+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468999999999999999999999999865
No 360
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.82 E-value=0.068 Score=62.89 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=30.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 604 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~ 604 (836)
.-|+|+|.||+|||++|++|+..+ |.+++.++...
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 569999999999999999999999 99988886433
No 361
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.80 E-value=0.44 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=18.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
+.+++.+|+|+|||..+-..+...
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 469999999999998666555443
No 362
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.79 E-value=0.78 Score=49.37 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
.++..++|.||+|+|||+++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345679999999999999999999776 455554443
No 363
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.76 E-value=0.24 Score=59.98 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999977777554
No 364
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=92.75 E-value=0.26 Score=60.54 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
.-++|+||.|+|||++.+.++..
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHH
Confidence 45899999999999999998743
No 365
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.74 E-value=0.068 Score=55.00 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v 600 (836)
..+-|.||||+|||++|+.|+..++++++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3578999999999999999999998776644
No 366
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.72 E-value=0.032 Score=55.64 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
-|.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 367
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=92.71 E-value=0.074 Score=65.57 Aligned_cols=69 Identities=23% Similarity=0.414 Sum_probs=56.7
Q ss_pred cccccccCCeeEEeccCCCCCCCCCCCCCCCCCCcCCceeeeeccCCCCcccccccCCCCCCCCCCCCCCCCcccccccc
Q 003253 180 KNHMLRIGDRVRFVGSTSGGLYPTASPTRGPPCGTRGKVALLFEDNPSSKIGVRFDKPIPDGVDLGGQCEGGHGFFCNVT 259 (836)
Q Consensus 180 ~~~~~~~gdrv~~~g~~~~~~~~~~~~~~~~~~g~~g~v~~~~~~n~~~~~~v~f~~~~~~~~~l~~~~~~~~~~~~~~~ 259 (836)
.+..|+=||||-||.++.. -+.|.+|.|+..--.+..--+-|.||.+--.|++||+.|++..|+=+..+
T Consensus 1062 ~~Q~F~LGDRVv~VqdsG~-----------VPl~~kGTVVGi~~~~~~~~ldVvFD~~F~~G~tlggrcs~~RG~~v~~s 1130 (1155)
T 3pie_A 1062 RSQRFHLGDRVMYIQDSGK-----------VPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRLQTRRGLGLDSS 1130 (1155)
T ss_pred cCCcccCCCeEEEecCCCC-----------CccccceEEEEEecCCCceEEEEEeccCccCCCcccccccccccccccHH
Confidence 3556899999999998432 35799999998776665667999999999999999999999877766555
No 368
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.62 E-value=0.07 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.-+.|.||+|+|||+|+++|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5689999999999999999998764
No 369
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.57 E-value=0.073 Score=54.82 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGAN 596 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~ 596 (836)
.-+-|.||+|+||||+++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 458899999999999999999988754
No 370
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.54 E-value=0.55 Score=50.21 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
++.-+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34679999999999999999999876
No 371
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.49 E-value=0.25 Score=52.64 Aligned_cols=73 Identities=25% Similarity=0.257 Sum_probs=44.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccc----------hh-----cc----ccc-HHHHHHHHHHH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------SK-----WF----GEG-EKYVKAVFSLA 624 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~----------s~-----~~----g~~-e~~i~~lf~~A 624 (836)
++..+.+.|++|+|||+++..+|..+ +..+..+++.... .. .+ +.. ....+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44678899999999999999999776 4444444432100 00 00 111 12234556666
Q ss_pred HhcCCceEEEccchhh
Q 003253 625 SKIAPSVIFVDEVDSM 640 (836)
Q Consensus 625 ~~~~psIL~IDEID~L 640 (836)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5567899999997543
No 372
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.46 E-value=0.075 Score=59.88 Aligned_cols=35 Identities=34% Similarity=0.325 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
++..|+|+|++|+|||+++..+|..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34679999999999999999999876 455555554
No 373
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.32 E-value=0.47 Score=53.22 Aligned_cols=73 Identities=25% Similarity=0.224 Sum_probs=44.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccccch-------h---------cc---ccc-HHHHHHHHHHH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------K---------WF---GEG-EKYVKAVFSLA 624 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~l~s-------~---------~~---g~~-e~~i~~lf~~A 624 (836)
++..+++.|++|+|||+++..+|..+ +..+..+++..... . +. +.. .......+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999877 44554444321100 0 00 011 22235556666
Q ss_pred HhcCCceEEEccchhh
Q 003253 625 SKIAPSVIFVDEVDSM 640 (836)
Q Consensus 625 ~~~~psIL~IDEID~L 640 (836)
+.....+++||=...+
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 5456689999865433
No 374
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.14 E-value=0.069 Score=51.99 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=30.7
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
.+.|+|.||+|| ++.++||+||+.+|.+++-.|.
T Consensus 5 ~~~i~l~G~~Gs--GKst~a~~La~~l~~~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLIGLMGA--GKTSVGSQLAKLTKRILYDSDK 38 (185)
T ss_dssp CCEEEEECSTTS--SHHHHHHHHHHHHCCCEEEHHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHHHhCCCEEEChH
Confidence 568999999999 9999999999999999887664
No 375
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.12 E-value=0.097 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=22.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||.|+|||+|++.++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999987
No 376
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.11 E-value=0.095 Score=50.60 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=30.1
Q ss_pred CceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 66 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 66 ~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
.-|+|+||+|| ++.+++|+||+.++.+++.+|.
T Consensus 4 ~~i~l~G~~Gs--GKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSA--GKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTS--SHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCC--CHHHHHHHHHHhcCCCeEEecc
Confidence 56999999999 9999999999999999888775
No 377
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.11 E-value=0.11 Score=50.46 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=42.0
Q ss_pred ccccccccccccchhHHHHHHHHHHhccCCccccccccccc-CCCCceeeecCCCchHHHHHHHHHHHhHh----CCeEE
Q 003253 22 LQESFENFPYYLSENTKNVLIAASYIHLKHKDHAKYTSELT-TVNPRILLSGPAGSEIYQEMLAKALAHYF----GAKLL 96 (836)
Q Consensus 22 ~~~~~~~fpy~l~e~tk~~l~~~~~~~l~~~~~~~~~~~l~-~~~~~iLl~gp~g~e~y~~~l~kala~~~----~~~ll 96 (836)
-+.|||+|-.. ++..+.++..+.- |..++. ...+.|+|+||+|| ++++|++++|+.. |.+.+
T Consensus 5 ~~~~f~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~g~~~~l~G~~G~--GKTtL~~~i~~~~~~~~g~~~~ 71 (180)
T 3ec2_A 5 WNANLDTYHPK-NVSQNRALLTIRV----------FVHNFNPEEGKGLTFVGSPGV--GKTHLAVATLKAIYEKKGIRGY 71 (180)
T ss_dssp TTCCSSSCCCC-SHHHHHHHHHHHH----------HHHSCCGGGCCEEEECCSSSS--SHHHHHHHHHHHHHHHSCCCCC
T ss_pred hhCccccccCC-CHHHHHHHHHHHH----------HHHhccccCCCEEEEECCCCC--CHHHHHHHHHHHHHHHcCCeEE
Confidence 35689998543 3444444433321 111221 23678999999999 9999999999987 55555
Q ss_pred EEec
Q 003253 97 IFDS 100 (836)
Q Consensus 97 ~~d~ 100 (836)
.++.
T Consensus 72 ~~~~ 75 (180)
T 3ec2_A 72 FFDT 75 (180)
T ss_dssp EEEH
T ss_pred EEEH
Confidence 5554
No 378
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.98 E-value=0.088 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||+|+|||+|++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999876
No 379
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.97 E-value=0.19 Score=56.89 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 469999999999999999998765
No 380
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.95 E-value=0.097 Score=52.36 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.-+.|.||+|+|||+|+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998874
No 381
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.94 E-value=0.38 Score=48.80 Aligned_cols=31 Identities=13% Similarity=-0.003 Sum_probs=23.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCCcceee
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA---GANFINIS 601 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~ 601 (836)
-.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35689999999999888887665 66665554
No 382
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.85 E-value=0.11 Score=53.33 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=23.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGA 595 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~ 595 (836)
.-|.|.||+|+|||++++.|+..++.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 56899999999999999999999863
No 383
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.83 E-value=0.065 Score=57.06 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=25.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CCcceeecccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSI 605 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~---~~~i~v~~s~l 605 (836)
.-|.|.||+|+|||++|+.++..++ ..+..+++..+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3589999999999999999999775 44455555544
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.76 E-value=0.18 Score=53.89 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
++.-+.|.||+|+||||+++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44678999999999999999999876
No 385
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.67 E-value=0.63 Score=53.58 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.3
Q ss_pred CCceEEEEcCCCChHHHHHHHH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAV 589 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~al 589 (836)
+...++|.||+|+|||+|++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3457999999999999999994
No 386
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.66 E-value=0.11 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.-+.|.||+|+|||+|.++|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999998764
No 387
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=91.45 E-value=0.32 Score=48.65 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.7
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKA 588 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~a 588 (836)
+.+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4699999999999986433
No 388
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.40 E-value=0.12 Score=55.76 Aligned_cols=40 Identities=35% Similarity=0.477 Sum_probs=35.9
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccccCCC
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGG 106 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~~~~~ 106 (836)
++.|+|+||+|| ++.+||++||+++++.++.+|+..++-+
T Consensus 5 ~~~i~i~GptGs--GKTtla~~La~~l~~~iis~Ds~qvy~~ 44 (323)
T 3crm_A 5 PPAIFLMGPTAA--GKTDLAMALADALPCELISVDSALIYRG 44 (323)
T ss_dssp CEEEEEECCTTS--CHHHHHHHHHHHSCEEEEEECTTTTBTT
T ss_pred CcEEEEECCCCC--CHHHHHHHHHHHcCCcEEeccchhhhcC
Confidence 347999999999 9999999999999999999999877653
No 389
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.24 E-value=0.34 Score=49.39 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=31.8
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCC--CCCCCceEEEEcCCCChHHHHHH
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQ--LTKPCKGILLFGPPGTGKTMLAK 587 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~--~~~p~~~vLL~GPpGtGKT~LA~ 587 (836)
.+..+|+++.-.+.+.+.+.+.= ...+..+.... .....+.+++.+|+|+|||..+-
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQN---FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTT---CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHH
T ss_pred CccCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHH
Confidence 34567788776777766665521 11111111100 00011479999999999998643
No 390
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.18 E-value=0.1 Score=50.81 Aligned_cols=32 Identities=34% Similarity=0.514 Sum_probs=29.0
Q ss_pred CceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 66 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 66 ~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+.|+|.||+|| ++.++||+||+.+|++++-.|
T Consensus 3 ~~I~l~G~~Gs--GKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGS--GKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCC--CHHHHHHHHHHHcCCCEEeCc
Confidence 57999999999 999999999999999977555
No 391
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.16 E-value=0.66 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=19.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..+++.+|+|+|||..+-..+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 469999999999998766655443
No 392
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=91.13 E-value=0.62 Score=55.71 Aligned_cols=18 Identities=39% Similarity=0.621 Sum_probs=16.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAK 587 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~ 587 (836)
.++++.||+|+|||..+.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 689999999999999773
No 393
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.12 E-value=0.44 Score=58.70 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=19.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVAT 591 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~ 591 (836)
.-++|+||.|+|||++.+.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999854
No 394
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.11 E-value=0.13 Score=55.14 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
+...+.|+||+|+|||+|++.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44579999999999999999999887
No 395
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.11 E-value=0.14 Score=50.16 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999876
No 396
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.07 E-value=0.36 Score=49.79 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
...|+|.|.||+|||+|+.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 357999999999999999998753
No 397
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.02 E-value=0.22 Score=48.36 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
+...|++.|++|+|||+|+.++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998653
No 398
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.00 E-value=0.14 Score=54.54 Aligned_cols=27 Identities=22% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
++.-|.|.||+|+|||++|+.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345789999999999999999998875
No 399
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.96 E-value=0.38 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
...|.|.|+||+|||+++.+++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999876
No 400
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.95 E-value=0.12 Score=50.75 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANF 597 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~ 597 (836)
.++||.|++|+|||++|.++... |..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 68999999999999999999874 5443
No 401
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.92 E-value=0.16 Score=54.36 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhC----CeEEEEecccc
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFG----AKLLIFDSHSL 103 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~----~~ll~~d~~~~ 103 (836)
.+.|||+||+|| +++.||+|+|+++. .+.+.+....|
T Consensus 152 ~~~lll~G~~Gt--GKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGI--GKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTS--SHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred CceEEEECCCCC--CHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 578999999999 99999999999665 77777776544
No 402
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.91 E-value=0.11 Score=50.26 Aligned_cols=32 Identities=34% Similarity=0.342 Sum_probs=28.5
Q ss_pred CceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 66 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 66 ~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+.|+|.||+|| ++.++||+||+.++++++-.|
T Consensus 5 ~~i~i~G~~Gs--GKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 5 KNIVFIGFMGS--GKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CCEEEECCTTS--CHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEEcCCCC--CHHHHHHHHHHHcCCCEEccc
Confidence 36999999999 999999999999999877544
No 403
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=90.86 E-value=0.69 Score=55.20 Aligned_cols=57 Identities=28% Similarity=0.383 Sum_probs=31.1
Q ss_pred ccchhhhchHHHHHHHHHHHhccccC--hhhhhcCCCCCCCceEEEEcCCCChHHHHHHHH
Q 003253 531 VTFDDIGALENVKDTLKELVMLPLQR--PELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV 589 (836)
Q Consensus 531 ~~~~di~G~~~vk~~L~~~v~~~l~~--~e~~~~~~~~~p~~~vLL~GPpGtGKT~LA~al 589 (836)
.+|++++-.+.+.+.+...=...+.. .+.+.. .+. ....+++.||+|+|||+.+...
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~-~~~-~~~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKK-GLL-EGNRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHT-TTT-TTCCEEEECCTTSCHHHHHHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHH-Hhc-CCCcEEEEcCCCCcHHHHHHHH
Confidence 56777765566666555421101111 111111 011 2368999999999999987443
No 404
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.81 E-value=0.12 Score=53.56 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=31.9
Q ss_pred ceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccccC
Q 003253 67 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLL 104 (836)
Q Consensus 67 ~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~~~ 104 (836)
-|+++||+|| ++.+||++||+++++.++..|....+
T Consensus 3 li~I~G~~GS--GKSTla~~La~~~~~~~i~~D~~~~~ 38 (253)
T 2ze6_A 3 LHLIYGPTCS--GKTDMAIQIAQETGWPVVALDRVQCC 38 (253)
T ss_dssp EEEEECCTTS--SHHHHHHHHHHHHCCCEEECCSGGGC
T ss_pred EEEEECCCCc--CHHHHHHHHHhcCCCeEEeccHHhcc
Confidence 4899999999 99999999999999999988875443
No 405
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.77 E-value=0.14 Score=54.93 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=37.1
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccccCCCC
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGL 107 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~~~~~~ 107 (836)
++-|+++||+|| ++..||++||+.++..++..||-.+|-++
T Consensus 10 ~~~i~i~Gptgs--GKt~la~~La~~~~~~iis~Ds~qvY~~~ 50 (316)
T 3foz_A 10 PKAIFLMGPTAS--GKTALAIELRKILPVELISVDSALIYKGM 50 (316)
T ss_dssp CEEEEEECCTTS--CHHHHHHHHHHHSCEEEEECCTTTTBTTC
T ss_pred CcEEEEECCCcc--CHHHHHHHHHHhCCCcEEecccccccccc
Confidence 457899999999 99999999999999999999998887643
No 406
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.71 E-value=0.13 Score=49.98 Aligned_cols=33 Identities=36% Similarity=0.462 Sum_probs=29.7
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
.+.|+|.||+|| ++.+++|+||++++++++.+|
T Consensus 11 ~~~i~i~G~~Gs--GKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGV--GKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTS--SHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCC--CHHHHHHHHHHHhCCeEEEHH
Confidence 467999999999 999999999999999887665
No 407
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.68 E-value=0.15 Score=59.55 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CCcceeeccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS 604 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~----~~~i~v~~s~ 604 (836)
..|+|.|++|+|||++|++|+..++ .+++.++...
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 5699999999999999999999985 7777777544
No 408
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.64 E-value=0.26 Score=54.09 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
++.-++|.||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44679999999999999999999876
No 409
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.61 E-value=0.093 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=15.7
Q ss_pred ceEEEEcCCCChHHHHHHHHH-HHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVA-TEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA-~~l 593 (836)
.-+.|.||+|+|||++++.|+ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468999999999999999999 765
No 410
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.54 E-value=0.13 Score=50.91 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=28.9
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+..|+|.||+|| ++.++||.||++++.+++..|
T Consensus 20 ~~~I~l~G~~Gs--GKST~a~~La~~l~~~~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGA--GKGTQAVKLAEKLGIPQISTG 52 (201)
T ss_dssp CCEEEEECCTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCC--CHHHHHHHHHHHhCCcEEehh
Confidence 346999999999 999999999999998876554
No 411
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=90.54 E-value=0.18 Score=56.81 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCCcceeecc
Q 003253 571 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 603 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~~s 603 (836)
.+|+++|+|+|||..+-.++...+.+++.+.+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888887766665544
No 412
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.53 E-value=0.16 Score=54.72 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
+..-+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 345689999999999999999998773
No 413
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.51 E-value=0.12 Score=58.76 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=25.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFI 598 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i 598 (836)
..|+|.|.||+|||++++.++..++..++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 57999999999999999999998865443
No 414
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.47 E-value=0.42 Score=52.85 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..++|.||+|+|||+|++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 579999999999999999998765
No 415
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.33 E-value=0.21 Score=54.01 Aligned_cols=27 Identities=15% Similarity=0.076 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.+.-+.|.||+|+||||+++.|+..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345689999999999999999998875
No 416
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.21 E-value=0.16 Score=49.26 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.-.+|+||.|+|||+++.||+..++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3679999999999999999998875
No 417
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=90.16 E-value=0.94 Score=54.58 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
..++|+||.|+|||++.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 35899999999999999999864
No 418
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.13 E-value=0.73 Score=46.77 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..|+|.|++|+|||+|+.++....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 579999999999999999998643
No 419
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.96 E-value=0.23 Score=50.28 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=25.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCccee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINI 600 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v 600 (836)
.-|.|.|++|+|||++++.|+..+ +.+++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 458899999999999999999988 4454433
No 420
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.92 E-value=0.068 Score=55.61 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCCc
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATEA-GANF 597 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~l-~~~~ 597 (836)
++.-|.|.|++|+|||++++.|+..+ +..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34579999999999999999999998 4433
No 421
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.89 E-value=0.21 Score=48.99 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.|++|+|||++++.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998875
No 422
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.76 E-value=0.26 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
..++|.|++|+|||+|+.+++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998864
No 423
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.69 E-value=0.19 Score=51.41 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=23.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.-|.|.|++|+|||++++.|+..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999983
No 424
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.49 E-value=0.14 Score=51.84 Aligned_cols=31 Identities=13% Similarity=0.407 Sum_probs=26.3
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEE
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLI 97 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~ 97 (836)
...||++||||| +++++|.|||++++-+.+.
T Consensus 58 kn~ili~GPPGt--GKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 58 KNCLVFCGPANT--GKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CSEEEEESCGGG--CHHHHHHHHHHHHTCEECC
T ss_pred ccEEEEECCCCC--CHHHHHHHHHHHhCCCeee
Confidence 346999999999 9999999999998766443
No 425
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.47 E-value=0.22 Score=53.20 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
.-+.|.||+|+|||||++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5689999999999999999999875
No 426
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=89.39 E-value=0.67 Score=50.74 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=33.0
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcC--CCCCCCceEEEEcCCCChHHHHHHHHH
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKG--QLTKPCKGILLFGPPGTGKTMLAKAVA 590 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~--~~~~p~~~vLL~GPpGtGKT~LA~alA 590 (836)
..+|+++.-.+.+.+.|...=.. .+..+... ......+.+++.+|+|+|||..+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~---~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFE---KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCC---SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCC---CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 35688887777777777653211 11111100 000011469999999999997655443
No 427
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=89.36 E-value=1 Score=49.61 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=24.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----CCCcceeec
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA----GANFINISM 602 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l----~~~~i~v~~ 602 (836)
++++.+|+|+|||..+-+++... +..++.+.+
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999888776654 445544444
No 428
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.36 E-value=0.18 Score=51.17 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCcceee
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 601 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~i~v~ 601 (836)
-.|-|+|..|||||++++.++. +|++++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4689999999999999999998 898877654
No 429
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=89.35 E-value=0.85 Score=50.21 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.1
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAV 589 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~al 589 (836)
+.+++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 46999999999999944443
No 430
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=89.34 E-value=0.38 Score=55.97 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.++|+.+|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 568999999999999988777654
No 431
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=89.29 E-value=0.86 Score=55.23 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
.-++|+||.|+|||++.+.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 45899999999999999999865
No 432
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.12 E-value=0.41 Score=49.67 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAK 587 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~ 587 (836)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998644
No 433
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.10 E-value=0.19 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||+|+|||||.+.|+...
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 468999999999999999998654
No 434
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.09 E-value=0.25 Score=49.18 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
...|+|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998765
No 435
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.96 E-value=0.2 Score=49.68 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEec
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDS 100 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~ 100 (836)
.+.|.|.||+|| ++.+|+|+||+.+|.+++-.|.
T Consensus 25 ~~~i~l~G~~Gs--GKsTl~~~La~~l~~~~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLTGYMGA--GKTTLGKAFARKLNVPFIDLDW 58 (199)
T ss_dssp CCEEEEECCTTS--CHHHHHHHHHHHHTCCEEEHHH
T ss_pred CCEEEEEcCCCC--CHHHHHHHHHHHcCCCEEcchH
Confidence 458999999999 9999999999999999876663
No 436
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.95 E-value=0.23 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
..|++.|++|+|||+|+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999864
No 437
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.94 E-value=0.2 Score=52.62 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=23.8
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCC
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGA 93 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~ 93 (836)
...|||+||||| ++.+||+|||+.++.
T Consensus 104 ~n~~~l~Gppgt--GKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATT--GKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTS--SHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCC--CHHHHHHHHHhhhcc
Confidence 346999999999 999999999998763
No 438
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.87 E-value=0.22 Score=54.15 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=36.4
Q ss_pred CceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccccCCCC
Q 003253 66 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGL 107 (836)
Q Consensus 66 ~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~~~~~~ 107 (836)
+-|+|.||.|| ++..|+++||+.++..++..|+-.+|-++
T Consensus 41 ~lIvI~GPTgs--GKTtLa~~LA~~l~~eiIs~Ds~qvYr~m 80 (339)
T 3a8t_A 41 KLLVLMGATGT--GKSRLSIDLAAHFPLEVINSDKMQVYKGL 80 (339)
T ss_dssp EEEEEECSTTS--SHHHHHHHHHTTSCEEEEECCSSTTBSSC
T ss_pred ceEEEECCCCC--CHHHHHHHHHHHCCCcEEcccccccccce
Confidence 36999999999 99999999999999999999998887744
No 439
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.82 E-value=0.17 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..+.|.|++|+|||+|++.|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999887
No 440
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.73 E-value=0.23 Score=51.22 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||+|+|||||.+.++...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999765
No 441
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.73 E-value=0.21 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||+|+|||+|++.|+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998765
No 442
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.72 E-value=0.43 Score=47.70 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..++|.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
No 443
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.72 E-value=0.21 Score=57.39 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=24.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGA 595 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~ 595 (836)
..|+|.|.+|||||++|++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999985
No 444
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.65 E-value=0.32 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 445
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.62 E-value=0.82 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||||+|||+|.++++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999765
No 446
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.52 E-value=0.19 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||+|+|||||.+.++...
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998654
No 447
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.40 E-value=0.25 Score=51.95 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999866
No 448
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=88.40 E-value=0.59 Score=50.64 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=31.4
Q ss_pred cccchhhhchHHHHHHHHHHHhccccChhhhhcC---CCCCCCceEEEEcCCCChHHHHHH
Q 003253 530 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKG---QLTKPCKGILLFGPPGTGKTMLAK 587 (836)
Q Consensus 530 ~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~---~~~~p~~~vLL~GPpGtGKT~LA~ 587 (836)
..+|+++.-.+.+.+.+...=. ..+..+... .+. ..+.+++.+|+|+|||..+.
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYGF---EEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHTC---CSCCHHHHHHHHHHH-HTCCEEECCCSSHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHH
Confidence 4568888777777777765321 111111100 000 01469999999999998643
No 449
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=88.38 E-value=0.32 Score=45.82 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
...|++.|++|+|||+|+.++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999754
No 450
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.35 E-value=0.24 Score=48.64 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..+.|.|++|+|||+|.+.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 451
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.32 E-value=0.24 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..+.|.|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 452
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.30 E-value=0.24 Score=47.42 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=28.5
Q ss_pred CceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 66 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 66 ~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+.|+|.||+|| ++.++||.||+.+|++++-.|
T Consensus 3 ~~I~l~G~~Gs--GKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGC--GMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTS--SHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCC--CHHHHHHHHHHHhCCcEEccc
Confidence 46999999999 999999999999999876554
No 453
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=88.26 E-value=0.46 Score=51.95 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=32.4
Q ss_pred CCcccchhhhchHHHHHHHHHHHhccccChhhhhcCC--CCCCCceEEEEcCCCChHHHHHHHH
Q 003253 528 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQ--LTKPCKGILLFGPPGTGKTMLAKAV 589 (836)
Q Consensus 528 ~~~~~~~di~G~~~vk~~L~~~v~~~l~~~e~~~~~~--~~~p~~~vLL~GPpGtGKT~LA~al 589 (836)
....+|+++.-...+.+.|.+.- ...+..+.... .....+.+++.+|+|+|||..+-..
T Consensus 37 ~~~~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 37 EIVDSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCCCCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHH
T ss_pred chhcCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHH
Confidence 33456777777777777666531 11111111100 0001246999999999999864433
No 454
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.21 E-value=0.28 Score=46.04 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
-.|++.|++|+|||+|+.++....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 455
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.16 E-value=0.18 Score=50.87 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
..+.|.||.|+|||+|++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999875
No 456
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.02 E-value=0.25 Score=53.12 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=36.1
Q ss_pred CceeeecCCCchHHHHHHHHHHHhHhCCeEEEEeccccCCCC
Q 003253 66 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFDSHSLLGGL 107 (836)
Q Consensus 66 ~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d~~~~~~~~ 107 (836)
+-|.++||+|+ ++..||++||+.++..++..||-.+|-++
T Consensus 4 ~~i~i~Gptgs--GKt~la~~La~~~~~~iis~Ds~QvYr~~ 43 (322)
T 3exa_A 4 KLVAIVGPTAV--GKTKTSVMLAKRLNGEVISGDSMQVYRGM 43 (322)
T ss_dssp EEEEEECCTTS--CHHHHHHHHHHTTTEEEEECCGGGGBTTC
T ss_pred cEEEEECCCcC--CHHHHHHHHHHhCccceeecCcccceeee
Confidence 45899999999 99999999999999999999998887643
No 457
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.98 E-value=0.38 Score=45.71 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 003253 568 PCKGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 568 p~~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
....|++.|++|+|||+|+.++...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999753
No 458
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=87.96 E-value=0.71 Score=53.50 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCCcceeeccc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 604 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~s~ 604 (836)
..|+|+|++|+|||++|+.|+..+ |.++..++...
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 569999999999999999999887 44566666543
No 459
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=87.93 E-value=0.59 Score=55.73 Aligned_cols=19 Identities=47% Similarity=0.691 Sum_probs=16.6
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKA 588 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~a 588 (836)
..+++.||+|+|||+.+..
T Consensus 41 ~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp SCEEEECSSHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHH
Confidence 5799999999999998743
No 460
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.91 E-value=0.27 Score=49.41 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=29.2
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+..|+|.||+|| ++.+++|.||++++.+++..|
T Consensus 4 ~~~I~l~G~~Gs--GKsT~a~~La~~l~~~~i~~d 36 (220)
T 1aky_A 4 SIRMVLIGPPGA--GKGTQAPNLQERFHAAHLATG 36 (220)
T ss_dssp CCEEEEECCTTS--SHHHHHHHHHHHHCCEEEEHH
T ss_pred CcEEEEECCCCC--CHHHHHHHHHHHcCceEEehh
Confidence 467999999999 999999999999998876654
No 461
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.91 E-value=0.29 Score=45.54 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999998653
No 462
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.90 E-value=0.23 Score=57.66 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=23.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
..+.|.|++|+||||++++||..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 5689999999999999999999884
No 463
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.84 E-value=0.3 Score=45.57 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
-.|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 464
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.84 E-value=0.25 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..+.|.||+|+|||||.+.|+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 465
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.81 E-value=0.28 Score=45.82 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..|++.|++|+|||+|+.++...-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 579999999999999999998643
No 466
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=87.81 E-value=0.93 Score=46.00 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=14.8
Q ss_pred ceEEEEcCCCChHHHHH
Q 003253 570 KGILLFGPPGTGKTMLA 586 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA 586 (836)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999854
No 467
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.80 E-value=0.28 Score=49.91 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=30.1
Q ss_pred CCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 63 TVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 63 ~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
.....|+|.||+|| ++.++|++||++++++++..|
T Consensus 14 ~~~~~I~l~G~~Gs--GKsT~a~~La~~l~~~~i~~d 48 (233)
T 1ak2_A 14 PKGVRAVLLGPPGA--GKGTQAPKLAKNFCVCHLATG 48 (233)
T ss_dssp CCCCEEEEECCTTS--SHHHHHHHHHHHHTCEEEEHH
T ss_pred CCCeEEEEECCCCC--CHHHHHHHHHHHhCCceecHH
Confidence 34568999999999 999999999999998876654
No 468
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.80 E-value=0.26 Score=51.56 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||+|+|||||.+.|+..+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998765
No 469
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.76 E-value=0.27 Score=53.73 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=23.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGAN 596 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~ 596 (836)
..+.|.||+|+|||||++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 569999999999999999999987543
No 470
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.72 E-value=0.59 Score=50.17 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-++|.|+.|+||||+.+.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 468999999999999999999764
No 471
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.68 E-value=0.46 Score=48.23 Aligned_cols=28 Identities=32% Similarity=0.280 Sum_probs=25.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCCc
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAGANF 597 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~~~~ 597 (836)
.-|.|.|++|+|||++++.++..++.+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 4689999999999999999999998643
No 472
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.64 E-value=0.23 Score=49.58 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=27.8
Q ss_pred ceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 67 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 67 ~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+|+|.||+|| ++.++|+.||++++++.+..|
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGA--GKGTQGERIVEKYGIPHISTG 32 (216)
T ss_dssp EEEEECSTTS--SHHHHHHHHHHHSSCCEEEHH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCcEEeHH
Confidence 5999999999 999999999999998876664
No 473
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.60 E-value=0.26 Score=47.10 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=28.8
Q ss_pred CceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 66 PRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 66 ~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+.|+|.|++|| ++.+++|.||+.+|.+++-.|
T Consensus 8 ~~i~l~G~~Gs--GKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGS--GKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCC--CHHHHHHHHHHHhCCCEEECh
Confidence 57999999999 999999999999999886554
No 474
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.58 E-value=0.23 Score=50.38 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||.|+|||||.+.++...
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998654
No 475
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.57 E-value=0.32 Score=45.61 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
-.|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998654
No 476
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.54 E-value=0.25 Score=49.33 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=27.8
Q ss_pred ceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 67 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 67 ~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+|+|.||+|| ++.++|+.||+++|++.+..|
T Consensus 2 ~I~l~G~~Gs--GKsT~a~~L~~~~~~~~i~~d 32 (216)
T 3fb4_A 2 NIVLMGLPGA--GKGTQAEQIIEKYEIPHISTG 32 (216)
T ss_dssp EEEEECSTTS--SHHHHHHHHHHHHCCCEEEHH
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCcEeeHH
Confidence 5999999999 999999999999998876554
No 477
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.52 E-value=0.31 Score=46.32 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=28.1
Q ss_pred ceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 67 RILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 67 ~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
.|.|.||+|| ++.+++|+||+.++.+++-.|
T Consensus 3 ~i~l~G~~Gs--GKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCC--FKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSS--SHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCC--CHHHHHHHHHHHhCCeeecCc
Confidence 5899999999 999999999999999886655
No 478
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.49 E-value=0.27 Score=53.92 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEAG 594 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l~ 594 (836)
..++|.||+|+|||||+++++....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4799999999999999999998763
No 479
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.48 E-value=0.28 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..+.|.||+|+|||||.+.|+..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 568999999999999999998754
No 480
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=87.42 E-value=0.42 Score=51.96 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=28.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCCcceeec
Q 003253 567 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 602 (836)
Q Consensus 567 ~p~~~vLL~GPpGtGKT~LA~alA~~l---~~~~i~v~~ 602 (836)
.+..-++|.|+||+|||+||..+|... +.++..++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344569999999999999999998764 666666654
No 481
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=87.42 E-value=0.27 Score=57.92 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 003253 571 GILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 571 ~vLL~GPpGtGKT~LA~alA~~l 593 (836)
..+|.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999877776554
No 482
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.41 E-value=0.33 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
.-+.|.||.|+|||||++.|+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999974
No 483
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.38 E-value=0.34 Score=46.64 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
..|+|.|++|+|||+|.++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 484
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=87.38 E-value=0.38 Score=53.94 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=16.9
Q ss_pred ceEEEEcCCCChHHHHH-HHHH
Q 003253 570 KGILLFGPPGTGKTMLA-KAVA 590 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA-~alA 590 (836)
+.+|+.||+|+|||..+ .++.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999975 4343
No 485
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=87.37 E-value=0.24 Score=48.16 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=28.8
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+.-|+|.||+|| ++.+++++||++++.+++..|
T Consensus 5 ~~~I~l~G~~Gs--GKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 5 PALIIVTGHPAT--GKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp CEEEEEEESTTS--SHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEEECCCCC--CHHHHHHHHHHHcCCeEecHH
Confidence 456999999999 999999999999998876554
No 486
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.33 E-value=0.33 Score=47.97 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=30.1
Q ss_pred cCCCCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 62 TTVNPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 62 ~~~~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
......|+|.||+|| ++.+|||.||+.+|+.++-.|
T Consensus 15 ~~~~~~I~l~G~~Gs--GKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 15 RRFPGSIVVMGVSGS--GKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp CCCSSCEEEECSTTS--CHHHHHHHHHHHHTCCEEEGG
T ss_pred CCCCeEEEEECCCCC--CHHHHHHHHHHHhCCEEEeCC
Confidence 333568999999999 999999999999998766544
No 487
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.29 E-value=0.34 Score=45.54 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
-.|++.|++|+|||+|++++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998654
No 488
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.28 E-value=0.3 Score=50.58 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
.-+.|.||+|+|||||.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999974
No 489
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.27 E-value=0.24 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=19.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-|.|.|++|+|||++++.|+..+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999887
No 490
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.24 E-value=0.31 Score=50.18 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-|.|.|++|+|||++++.++..+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999887
No 491
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.16 E-value=1.2 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
...+.|.|+||+|||+++.+++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998765
No 492
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.15 E-value=0.32 Score=46.30 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 003253 569 CKGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 569 ~~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
...|++.|++|+|||+|+.++....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3579999999999999999997643
No 493
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.11 E-value=0.27 Score=50.26 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||.|+|||||.+.|+..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998765
No 494
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.11 E-value=0.28 Score=47.93 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=28.8
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhHhCCeEEEEe
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHYFGAKLLIFD 99 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~~~~~ll~~d 99 (836)
+..|.|.||+|| ++.++||.||++++.+++-.|
T Consensus 12 ~~~I~l~G~~Gs--GKsT~a~~L~~~l~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGS--GKGTQCEKLVEKYGFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTS--SHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHHHhCCeEEcHH
Confidence 467999999999 999999999999997766554
No 495
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.10 E-value=0.34 Score=45.49 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
..|++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999754
No 496
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.09 E-value=0.3 Score=51.34 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||+|+|||||++.|+..+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998765
No 497
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.08 E-value=0.35 Score=45.94 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 003253 570 KGILLFGPPGTGKTMLAKAVATE 592 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~ 592 (836)
..|++.|++|+|||+|..++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999754
No 498
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.08 E-value=0.29 Score=47.84 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=28.9
Q ss_pred CCceeeecCCCchHHHHHHHHHHHhH-hCCeEEEEe
Q 003253 65 NPRILLSGPAGSEIYQEMLAKALAHY-FGAKLLIFD 99 (836)
Q Consensus 65 ~~~iLl~gp~g~e~y~~~l~kala~~-~~~~ll~~d 99 (836)
...|+|.||+|| ++.+++|+||+. +|.+++-+|
T Consensus 10 ~~~I~l~G~~Gs--GKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGT--GKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTS--SHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHHhcCCCEEeeHH
Confidence 467999999999 999999999999 788776555
No 499
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.07 E-value=0.27 Score=50.90 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||+|+|||||++.|+..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 500
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.04 E-value=0.27 Score=51.16 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 003253 570 KGILLFGPPGTGKTMLAKAVATEA 593 (836)
Q Consensus 570 ~~vLL~GPpGtGKT~LA~alA~~l 593 (836)
.-+.|.||.|+|||||.+.|+...
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998755
Done!