Query 003255
Match_columns 836
No_of_seqs 499 out of 2418
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 20:00:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 3E-128 7E-133 1114.6 34.7 464 94-686 17-500 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 7E-123 1E-127 1084.5 32.2 464 94-683 25-518 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 5E-121 1E-125 1070.6 37.3 455 100-684 19-497 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 6E-114 1E-118 1012.6 35.6 446 107-683 1-470 (683)
5 KOG1157 Predicted guanosine po 100.0 5E-74 1.1E-78 616.2 23.9 329 98-544 71-401 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 1E-38 2.2E-43 312.3 5.1 153 107-274 1-153 (153)
7 PF04607 RelA_SpoT: Region fou 99.9 6E-28 1.3E-32 224.5 7.6 108 422-540 1-114 (115)
8 cd05399 NT_Rel-Spo_like Nucleo 99.9 5.8E-27 1.3E-31 222.8 12.6 118 397-529 6-129 (129)
9 COG2357 PpGpp synthetase catal 99.9 2.5E-27 5.5E-32 244.1 7.4 136 397-545 34-182 (231)
10 COG0317 SpoT Guanosine polypho 99.9 6.6E-27 1.4E-31 272.7 8.1 91 737-836 354-448 (701)
11 PRK11092 bifunctional (p)ppGpp 99.9 9.1E-26 2E-30 266.7 8.1 91 737-836 353-447 (702)
12 PRK10872 relA (p)ppGpp synthet 99.9 5.4E-24 1.2E-28 251.6 7.4 92 736-836 370-465 (743)
13 TIGR00691 spoT_relA (p)ppGpp s 99.9 1.7E-22 3.6E-27 239.4 8.2 91 737-836 327-421 (683)
14 PF02824 TGS: TGS domain; Int 99.5 1.7E-14 3.8E-19 121.4 4.3 56 781-836 1-60 (60)
15 cd01669 TGS_Ygr210_C TGS_Ygr21 98.9 1.2E-09 2.6E-14 96.5 4.5 48 788-836 22-76 (76)
16 cd01666 TGS_DRG_C TGS_DRG_C: 98.8 5.6E-09 1.2E-13 92.1 5.3 49 788-836 16-75 (75)
17 cd01668 TGS_RelA_SpoT TGS_RelA 98.7 2.8E-08 6.1E-13 81.8 7.2 56 781-836 1-60 (60)
18 PF02824 TGS: TGS domain; Int 98.2 5.3E-07 1.1E-11 76.1 1.7 49 574-629 2-60 (60)
19 cd01616 TGS The TGS domain, na 98.2 6.3E-06 1.4E-10 66.1 6.9 54 783-836 3-60 (60)
20 PRK01777 hypothetical protein; 98.0 1.3E-05 2.8E-10 74.0 7.0 56 779-835 7-74 (95)
21 cd04938 TGS_Obg-like TGS_Obg-l 98.0 1.6E-05 3.6E-10 70.4 6.5 48 789-836 24-76 (76)
22 PRK09602 translation-associate 97.9 1E-05 2.2E-10 91.7 4.8 46 790-836 342-394 (396)
23 PRK05659 sulfur carrier protei 97.8 3.8E-05 8.3E-10 65.4 6.3 53 784-836 3-61 (66)
24 TIGR03276 Phn-HD phosphonate d 97.8 5.5E-05 1.2E-09 77.2 7.9 71 115-190 13-102 (179)
25 PRK06437 hypothetical protein; 97.6 0.00013 2.8E-09 63.1 6.1 52 785-836 6-62 (67)
26 PRK06944 sulfur carrier protei 97.6 0.00015 3.3E-09 61.5 6.3 52 785-836 4-60 (65)
27 cd00565 ThiS ThiaminS ubiquiti 97.5 0.00015 3.2E-09 62.0 5.5 51 786-836 4-60 (65)
28 cd01667 TGS_ThrRS_N TGS _ThrRS 97.5 0.00023 4.9E-09 57.5 6.4 54 783-836 3-60 (61)
29 PRK07440 hypothetical protein; 97.5 0.00019 4.1E-09 62.7 6.1 54 783-836 6-65 (70)
30 COG2104 ThiS Sulfur transfer p 97.4 0.00029 6.2E-09 61.4 5.8 50 787-836 8-63 (68)
31 PRK08364 sulfur carrier protei 97.4 0.00034 7.4E-09 60.8 6.3 47 790-836 17-65 (70)
32 PRK07696 sulfur carrier protei 97.4 0.00027 5.8E-09 61.1 5.4 52 785-836 4-62 (67)
33 TIGR01683 thiS thiamine biosyn 97.3 0.00051 1.1E-08 58.5 6.1 50 787-836 4-59 (64)
34 PRK08053 sulfur carrier protei 97.2 0.00089 1.9E-08 57.5 6.2 52 785-836 4-61 (66)
35 PF03658 Ub-RnfH: RnfH family 96.9 0.0007 1.5E-08 61.4 3.4 55 780-835 5-71 (84)
36 PRK06488 sulfur carrier protei 96.9 0.0019 4.2E-08 55.1 5.7 50 786-836 5-60 (65)
37 PF14451 Ub-Mut7C: Mut7-C ubiq 96.9 0.002 4.3E-08 58.0 5.7 46 790-835 26-74 (81)
38 cd01669 TGS_Ygr210_C TGS_Ygr21 96.8 0.0007 1.5E-08 60.2 2.5 43 582-629 27-76 (76)
39 cd01666 TGS_DRG_C TGS_DRG_C: 96.6 0.00084 1.8E-08 59.6 1.4 46 582-629 21-75 (75)
40 PRK06083 sulfur carrier protei 96.3 0.0098 2.1E-07 54.0 6.3 57 780-836 17-79 (84)
41 PRK05863 sulfur carrier protei 96.2 0.0077 1.7E-07 51.7 5.1 53 784-836 3-60 (65)
42 cd00754 MoaD Ubiquitin domain 96.1 0.011 2.4E-07 51.6 5.5 48 789-836 18-75 (80)
43 PLN02799 Molybdopterin synthas 96.0 0.015 3.2E-07 51.7 5.8 49 787-835 19-76 (82)
44 PF02597 ThiS: ThiS family; I 95.3 0.027 5.8E-07 48.8 4.6 47 789-835 14-71 (77)
45 PTZ00258 GTP-binding protein; 95.1 0.031 6.7E-07 63.8 5.9 56 780-835 304-385 (390)
46 COG1163 DRG Predicted GTPase [ 95.0 0.016 3.4E-07 64.3 2.9 45 791-835 308-363 (365)
47 COG2914 Uncharacterized protei 94.9 0.043 9.4E-07 50.8 5.0 54 777-835 12-74 (99)
48 cd01668 TGS_RelA_SpoT TGS_RelA 94.9 0.021 4.7E-07 46.8 2.8 48 575-629 3-60 (60)
49 PRK14707 hypothetical protein; 94.3 0.11 2.4E-06 68.1 8.4 109 421-541 2308-2425(2710)
50 TIGR01682 moaD molybdopterin c 94.2 0.12 2.5E-06 45.8 5.9 47 789-835 18-74 (80)
51 PLN02908 threonyl-tRNA synthet 93.7 0.35 7.5E-06 59.2 10.7 89 729-836 19-112 (686)
52 PRK12444 threonyl-tRNA synthet 93.0 0.18 4E-06 60.9 6.8 56 781-836 6-65 (639)
53 TIGR03401 cyanamide_fam HD dom 91.8 0.63 1.4E-05 49.7 8.3 63 93-162 30-96 (228)
54 cd01616 TGS The TGS domain, na 91.1 0.19 4.1E-06 39.9 2.7 41 582-629 13-60 (60)
55 smart00471 HDc Metal dependent 90.8 0.12 2.5E-06 46.2 1.5 43 123-165 2-45 (124)
56 PRK12703 tRNA 2'-O-methylase; 90.7 1.1 2.5E-05 50.4 9.3 125 49-187 123-257 (339)
57 TIGR01687 moaD_arch MoaD famil 89.9 0.64 1.4E-05 41.7 5.4 46 789-835 18-82 (88)
58 PF01966 HD: HD domain; Inter 89.0 0.3 6.6E-06 44.2 2.7 38 127-164 2-41 (122)
59 PRK11130 moaD molybdopterin sy 88.8 1.3 2.7E-05 39.5 6.4 41 795-835 24-75 (81)
60 TIGR02988 YaaA_near_RecF S4 do 88.6 0.4 8.7E-06 40.2 2.9 27 808-834 31-58 (59)
61 PRK09602 translation-associate 87.8 0.2 4.3E-06 57.4 0.8 45 582-631 345-396 (396)
62 PRK01777 hypothetical protein; 87.1 0.51 1.1E-05 44.0 2.9 46 581-631 22-77 (95)
63 PRK14707 hypothetical protein; 86.9 1.6 3.5E-05 58.2 7.9 103 425-539 2544-2654(2710)
64 PF01479 S4: S4 domain; Inter 86.6 0.38 8.1E-06 38.4 1.5 25 808-832 23-48 (48)
65 PRK09601 GTP-binding protein Y 86.5 0.57 1.2E-05 53.3 3.4 56 780-835 280-361 (364)
66 cd01764 Urm1 Urm1-like ubuitin 85.5 1.5 3.3E-05 40.5 5.2 41 795-835 27-88 (94)
67 PRK09169 hypothetical protein; 85.1 2.6 5.6E-05 56.9 8.7 109 420-540 1916-2034(2316)
68 PRK05659 sulfur carrier protei 84.5 0.93 2E-05 38.5 3.0 43 581-630 11-62 (66)
69 PF14453 ThiS-like: ThiS-like 84.0 3.2 6.9E-05 35.4 5.9 49 787-835 6-54 (57)
70 smart00363 S4 S4 RNA-binding d 82.0 1.2 2.6E-05 35.2 2.6 25 810-834 25-50 (60)
71 cd01667 TGS_ThrRS_N TGS _ThrRS 81.3 1.3 2.9E-05 35.3 2.6 41 582-629 13-60 (61)
72 PRK00413 thrS threonyl-tRNA sy 80.5 1.2 2.7E-05 53.6 3.2 45 582-633 14-65 (638)
73 COG2104 ThiS Sulfur transfer p 79.9 1.6 3.4E-05 38.4 2.8 41 582-629 14-63 (68)
74 COG1418 Predicted HD superfami 78.1 2.4 5.2E-05 45.1 4.0 45 122-166 33-77 (222)
75 COG1188 Ribosome-associated he 78.0 2.2 4.9E-05 40.2 3.3 26 810-835 33-58 (100)
76 cd00565 ThiS ThiaminS ubiquiti 77.3 2 4.3E-05 36.6 2.6 22 607-630 36-61 (65)
77 PF03658 Ub-RnfH: RnfH family 77.1 1.2 2.7E-05 40.7 1.3 21 608-630 53-73 (84)
78 PRK07440 hypothetical protein; 76.9 2.5 5.3E-05 37.1 3.1 43 581-630 15-66 (70)
79 PRK06437 hypothetical protein; 74.1 2.2 4.7E-05 37.0 2.0 42 582-630 17-63 (67)
80 cd04938 TGS_Obg-like TGS_Obg-l 71.4 3.3 7.1E-05 37.0 2.5 42 582-629 28-76 (76)
81 cd00165 S4 S4/Hsp/ tRNA synthe 71.2 3.8 8.3E-05 33.3 2.8 26 809-834 24-50 (70)
82 COG1977 MoaD Molybdopterin con 69.8 4.1 8.8E-05 36.8 2.8 23 813-835 56-78 (84)
83 PF00498 FHA: FHA domain; Int 68.6 3.6 7.7E-05 34.6 2.1 24 811-834 42-67 (68)
84 PRK08053 sulfur carrier protei 64.3 6.6 0.00014 33.7 2.9 22 607-630 37-62 (66)
85 PRK08364 sulfur carrier protei 62.9 7 0.00015 34.0 2.9 22 607-630 45-66 (70)
86 PRK10119 putative hydrolase; P 62.8 15 0.00033 39.4 6.0 58 102-162 5-62 (231)
87 PRK07696 sulfur carrier protei 62.0 7.3 0.00016 33.8 2.8 22 607-630 38-63 (67)
88 TIGR00277 HDIG uncharacterized 59.6 8.1 0.00018 32.6 2.7 38 125-162 4-41 (80)
89 COG0012 Predicted GTPase, prob 58.5 3.4 7.4E-05 47.1 0.2 46 789-834 320-368 (372)
90 PRK06488 sulfur carrier protei 56.2 11 0.00025 32.0 3.0 22 607-630 36-61 (65)
91 PRK05327 rpsD 30S ribosomal pr 56.0 9.9 0.00021 40.0 3.1 27 809-835 116-143 (203)
92 cd00077 HDc Metal dependent ph 54.6 5.5 0.00012 36.0 0.8 40 125-164 2-44 (145)
93 PRK03826 5'-nucleotidase; Prov 54.6 26 0.00056 36.7 5.9 40 124-163 27-72 (195)
94 TIGR00488 putative HD superfam 54.3 8.4 0.00018 38.4 2.1 39 124-162 7-45 (158)
95 TIGR01683 thiS thiamine biosyn 53.7 13 0.00029 31.6 2.9 22 607-630 35-60 (64)
96 PRK00413 thrS threonyl-tRNA sy 51.6 12 0.00025 45.4 3.2 28 809-836 34-61 (638)
97 PF06071 YchF-GTPase_C: Protei 50.6 11 0.00024 34.6 2.1 46 790-835 14-82 (84)
98 COG1713 Predicted HD superfami 50.4 11 0.00023 39.4 2.3 43 123-165 15-57 (187)
99 PF13510 Fer2_4: 2Fe-2S iron-s 49.1 35 0.00075 30.7 5.0 55 780-834 2-79 (82)
100 TIGR01017 rpsD_bact ribosomal 48.6 16 0.00034 38.4 3.2 27 809-835 113-140 (200)
101 TIGR00295 conserved hypothetic 47.3 15 0.00032 37.1 2.7 40 124-163 12-56 (164)
102 CHL00113 rps4 ribosomal protei 46.1 17 0.00037 38.4 2.9 28 808-835 111-139 (201)
103 PRK06944 sulfur carrier protei 43.8 20 0.00043 30.3 2.5 22 607-630 36-61 (65)
104 TIGR03069 PS_II_S4 photosystem 43.2 22 0.00047 38.8 3.3 28 808-835 205-233 (257)
105 COG0522 RpsD Ribosomal protein 42.5 26 0.00057 37.1 3.7 28 808-835 116-144 (205)
106 COG4341 Predicted HD phosphohy 41.2 46 0.001 34.3 5.0 35 121-160 24-60 (186)
107 PLN00051 RNA-binding S4 domain 40.9 23 0.00049 38.9 3.1 28 808-835 213-241 (267)
108 PRK11507 ribosome-associated p 40.9 28 0.0006 31.1 3.0 27 808-834 34-61 (70)
109 PRK07152 nadD putative nicotin 40.8 16 0.00034 41.1 1.9 39 124-162 195-233 (342)
110 PRK06083 sulfur carrier protei 40.0 15 0.00032 33.6 1.3 22 607-630 55-80 (84)
111 cd04867 TGS_YchF_C TGS_YchF_C: 39.2 29 0.00063 31.9 2.9 43 789-835 13-82 (83)
112 PRK00106 hypothetical protein; 39.1 22 0.00047 42.8 2.7 42 122-163 347-388 (535)
113 PF14451 Ub-Mut7C: Mut7-C ubiq 37.2 24 0.00053 32.0 2.1 21 607-629 55-75 (81)
114 PF13023 HD_3: HD domain; PDB: 37.0 21 0.00045 36.1 1.9 40 123-163 20-62 (165)
115 cd00754 MoaD Ubiquitin domain 36.7 27 0.00059 30.2 2.3 22 607-630 55-76 (80)
116 COG1977 MoaD Molybdopterin con 36.0 37 0.0008 30.7 3.1 30 594-630 51-80 (84)
117 cd01809 Scythe_N Ubiquitin-lik 35.5 98 0.0021 26.0 5.5 56 780-835 2-70 (72)
118 PF12917 HD_2: HD containing h 35.1 47 0.001 35.5 4.2 110 124-243 28-143 (215)
119 COG3383 Uncharacterized anaero 35.0 66 0.0014 40.2 5.8 56 779-834 3-76 (978)
120 PRK12705 hypothetical protein; 34.6 31 0.00067 41.3 3.0 42 122-163 320-361 (508)
121 PRK12704 phosphodiesterase; Pr 34.3 31 0.00066 41.4 3.0 40 123-162 333-372 (520)
122 COG1078 HD superfamily phospho 32.8 21 0.00046 41.6 1.3 35 126-160 52-95 (421)
123 PRK11025 23S rRNA pseudouridyl 32.4 34 0.00073 38.1 2.8 25 810-834 44-68 (317)
124 TIGR03319 YmdA_YtgF conserved 31.0 35 0.00076 40.8 2.8 40 123-162 327-366 (514)
125 COG1896 Predicted hydrolases o 30.6 1.1E+02 0.0024 32.0 6.1 119 106-242 11-141 (193)
126 COG2302 Uncharacterized conser 30.2 40 0.00087 36.8 2.8 28 808-835 202-230 (257)
127 COG0564 RluA Pseudouridylate s 29.8 42 0.00092 37.1 3.0 25 811-835 37-61 (289)
128 PF02597 ThiS: ThiS family; I 28.6 47 0.001 28.5 2.4 22 607-630 49-73 (77)
129 PRK10348 ribosome-associated h 27.8 60 0.0013 32.3 3.3 27 809-835 32-58 (133)
130 COG2316 Predicted hydrolase (H 27.8 54 0.0012 34.0 3.0 61 123-186 45-118 (212)
131 TIGR00384 dhsB succinate dehyd 27.2 66 0.0014 33.9 3.8 40 791-830 19-77 (220)
132 PRK11840 bifunctional sulfur c 27.2 48 0.001 37.5 2.8 24 797-820 259-282 (326)
133 COG2501 S4-like RNA binding pr 26.2 47 0.001 29.9 2.0 26 809-834 35-61 (73)
134 PLN02799 Molybdopterin synthas 25.7 55 0.0012 28.9 2.4 22 607-630 57-78 (82)
135 PTZ00305 NADH:ubiquinone oxido 25.4 1.1E+02 0.0023 34.4 5.1 50 785-834 72-142 (297)
136 KOG3148 Glucosamine-6-phosphat 24.4 39 0.00085 35.5 1.4 23 781-803 24-49 (273)
137 COG3400 Uncharacterized protei 24.2 80 0.0017 36.3 3.8 64 768-835 132-206 (471)
138 PRK01286 deoxyguanosinetriphos 24.1 49 0.0011 37.7 2.2 61 101-161 33-98 (336)
139 PRK03007 deoxyguanosinetriphos 24.1 75 0.0016 37.3 3.7 66 96-161 34-106 (428)
140 PF04753 Corona_NS2: Coronavir 23.7 41 0.0009 31.7 1.3 12 278-289 20-31 (109)
141 PRK11180 rluD 23S rRNA pseudou 23.5 64 0.0014 36.0 3.0 27 809-835 41-68 (325)
142 PTZ00258 GTP-binding protein; 23.3 45 0.00098 38.6 1.8 49 582-630 320-387 (390)
143 PF13275 S4_2: S4 domain; PDB: 23.3 42 0.00091 29.4 1.1 23 812-834 34-57 (65)
144 PRK12577 succinate dehydrogena 22.6 1.2E+02 0.0025 34.3 4.8 39 790-828 22-78 (329)
145 cd01805 RAD23_N Ubiquitin-like 22.5 2.8E+02 0.006 23.8 6.2 56 780-835 2-72 (77)
146 cd00060 FHA Forkhead associate 22.0 90 0.002 27.5 3.1 24 812-835 67-92 (102)
147 PF12791 RsgI_N: Anti-sigma fa 21.6 81 0.0018 26.1 2.5 24 775-798 2-25 (56)
148 COG2914 Uncharacterized protei 21.1 1.3E+02 0.0028 28.5 3.9 22 608-631 56-77 (99)
149 TIGR01682 moaD molybdopterin c 21.1 97 0.0021 27.3 3.1 21 607-629 55-75 (80)
150 PRK11130 moaD molybdopterin sy 21.0 1E+02 0.0022 27.4 3.2 21 607-629 56-76 (81)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=3.1e-128 Score=1114.61 Aligned_cols=464 Identities=39% Similarity=0.620 Sum_probs=419.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHH
Q 003255 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173 (836)
Q Consensus 94 ~~y~~~~~~~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVEDT~~T~eeI~~ 173 (836)
..|.......+.+|+.||.++|.||.|+||+|||.||++||.||+++.+ |.++++||||||++|||++|.++|++
T Consensus 17 ~~~~~~~~~~l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~-----d~~tl~AaLLHD~vEDt~~t~e~i~~ 91 (701)
T COG0317 17 ATYLPPVDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHM-----DMETLAAALLHDTIEDTPVTEELIEE 91 (701)
T ss_pred HhcCChHHHHHHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccC-----CHHHHHHHHccchHhcCCCCHHHHHH
Confidence 4455445556999999999999999999999999999999999999985 68999999999999999999999999
Q ss_pred HhcHHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHHhhhhhcCCChHHH
Q 003255 174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA 253 (836)
Q Consensus 174 ~FG~eVA~LV~gVTKl~~i~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~eKq 253 (836)
.||++||+||+||||+..+..+. .....|+||+|||++||++|+||++|||||||||||||...+++||
T Consensus 92 ~FG~eVa~LV~GvTkl~~i~~~~-----------~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~ 160 (701)
T COG0317 92 IFGKEVAKLVEGVTKLKKIGQLS-----------SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKR 160 (701)
T ss_pred HHCHHHHHHHhhHHHhhhhhccC-----------ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHH
Confidence 99999999999999999874211 1123489999999999999999999999999999999999889999
Q ss_pred HHHHHHhHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCCccccccccccccCCCCCccCccCCC
Q 003255 254 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD 333 (836)
Q Consensus 254 ~~iA~ETl~IYaPLA~RLGi~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 333 (836)
+++|+||++||||||||||||++|||||||||+||+|+.|+.|.+.|.+
T Consensus 161 ~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e------------------------------- 209 (701)
T COG0317 161 RRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDE------------------------------- 209 (701)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999999986
Q ss_pred CcccchhhhhhhHHhhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCC
Q 003255 334 ESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYI 413 (836)
Q Consensus 334 ~~~~~~~~~~~~~k~ll~av~~fd~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~ 413 (836)
+|.+|+.+++++. ..+++.|.+
T Consensus 210 ---------------------------~r~~re~~i~~~~----------------------~~l~~~L~~--------- 231 (701)
T COG0317 210 ---------------------------KRLEREQYIENVV----------------------SELREELKA--------- 231 (701)
T ss_pred ---------------------------HHHHHHHHHHHHH----------------------HHHHHHHHH---------
Confidence 5889999999886 124556665
Q ss_pred CCceEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccC
Q 003255 414 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVN 493 (836)
Q Consensus 414 ~gi~~~I~gR~K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~ 493 (836)
.|++++|+||+||+||||+||++|+..|++|+|++||||||++ +.|||++||+||.+|+|+|+|||||||+
T Consensus 232 ~gi~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~---------~~dCY~~LGiVH~~~kp~PgrFKDYIA~ 302 (701)
T COG0317 232 AGIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDT---------IPDCYTALGIVHTLWKPIPGEFDDYIAN 302 (701)
T ss_pred cCCeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECC---------hHHHHHHHHHHHhcCcCCCCcccccccc
Confidence 3889999999999999999999999999999999999999986 8899999999999999999999999999
Q ss_pred CCCCCCcceEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhhccccCCccccccccccchHHHhccCCCCCCCCCcccc
Q 003255 494 PKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMDESDIEASSSLSKDTDDHNPLDT 573 (836)
Q Consensus 494 PK~NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~~~~~~ 573 (836)
||+||||||||||.||.|.++||||||+.||..||+|+||||.||+++......-.+=++|.+|++...++.||++++|.
T Consensus 303 PK~NgYQSlHTtv~gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~~~~~~~~Wlr~lle~q~~~~d~~ef~e~~k~ 382 (701)
T COG0317 303 PKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGSAYEEKIAWLRQLLEWQEESADSGEFLEQLKS 382 (701)
T ss_pred CCCCCCceeEEEEECCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCchhhHHHHHHHHHHHHHHhcCCcHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998732111001225568888888888999999998
Q ss_pred c-------ccccccc---ccCCCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCC--Ccc
Q 003255 574 D-------LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--FQI 634 (836)
Q Consensus 574 d-------vftPkg~---Lp~G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~--~p~ 634 (836)
| +|||||+ ||.|+|++|| |||+|+|||| ||| +|||+|+|+|||+|||+|++ +|+
T Consensus 383 dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkV-----nG~--ivpl~~~Lk~Gd~VEIit~k~~~Ps 455 (701)
T COG0317 383 DLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKV-----NGR--IVPLTTKLQTGDQVEIITSKHAGPS 455 (701)
T ss_pred cccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEEE-----CCE--EeccceecCCCCEEEEEeCCCCCCC
Confidence 8 4799994 7999886665 9999999999 999 99999999999999999998 599
Q ss_pred hhHHHHHHHhHhhhh-hhcccCCCCchhhhhhhcccccCCeEeecccccccCC
Q 003255 635 KCWEAYARLYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRLLP 686 (836)
Q Consensus 635 ~dWL~~v~t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~~~~ 686 (836)
+|||+||+|+||+++ +-|| ...+.+.++++ |+--+...|+++-.
T Consensus 456 ~~Wl~~v~t~kAR~kIr~~~--k~~~re~~i~~------G~~lLe~~l~~~g~ 500 (701)
T COG0317 456 RDWLNFVVTSRARAKIRAWF--KKQDRDENVEA------GRELLEKELSRLGL 500 (701)
T ss_pred HHHHHHHhhHHHHHHHHHHH--HHHHHHhHHHH------HHHHHHHHHHHcCC
Confidence 999999999999999 6666 88999999999 99999999998765
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=6.8e-123 Score=1084.46 Aligned_cols=464 Identities=30% Similarity=0.501 Sum_probs=406.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHH
Q 003255 94 TGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEE 173 (836)
Q Consensus 94 ~~y~~~~~~~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVEDT~~T~eeI~~ 173 (836)
..|...+.+.|++|+.||.++|.| |+||||||.||++||.|||++++ |.+||+||||||+||||++|.++|++
T Consensus 25 ~~~~~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~-----D~~ti~AaLLHD~vedt~~t~e~i~~ 97 (743)
T PRK10872 25 GITSQQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSM-----DIDTLRAALLFPLADANVVSEDVLRE 97 (743)
T ss_pred HhhhHHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCC-----CHHHHHHHHhhhhHhcCCCCHHHHHH
Confidence 344434557899999999999999 89999999999999999999985 78999999999999999999999999
Q ss_pred HhcHHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHHhhhhhcCCChHHH
Q 003255 174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKA 253 (836)
Q Consensus 174 ~FG~eVA~LV~gVTKl~~i~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~eKq 253 (836)
.||++||.||+||||++.+....+.. .......|+||||||||||++|+||+||||||||||||||..+|++||
T Consensus 98 ~FG~~Va~lVdgvtKl~~i~~~~~~~------~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq 171 (743)
T PRK10872 98 SVGKSIVNLIHGVRDMDAIRQLKATH------NDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDER 171 (743)
T ss_pred HHCHHHHHHHHHHHHHHHhhhhhccc------ccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHH
Confidence 99999999999999999875421000 011234599999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCCccccccccccccCCCCCccCccCCC
Q 003255 254 RAVAQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDD 333 (836)
Q Consensus 254 ~~iA~ETl~IYaPLA~RLGi~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 333 (836)
+++|+||++||||||||||||+||||||||||+||+|+.|+.|++.|.+
T Consensus 172 ~~iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~------------------------------- 220 (743)
T PRK10872 172 VLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHE------------------------------- 220 (743)
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999999975
Q ss_pred CcccchhhhhhhHHhhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCC
Q 003255 334 ESFTTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYI 413 (836)
Q Consensus 334 ~~~~~~~~~~~~~k~ll~av~~fd~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~ 413 (836)
++.+|+.|++++. ..+++.|++.
T Consensus 221 ---------------------------~~~~r~~~i~~~~----------------------~~l~~~L~~~-------- 243 (743)
T PRK10872 221 ---------------------------RRIDREHYIEEFV----------------------GHLRAEMKAE-------- 243 (743)
T ss_pred ---------------------------HHHHHHHHHHHHH----------------------HHHHHHHHhc--------
Confidence 4778999999886 1345556553
Q ss_pred CCceEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccC
Q 003255 414 PGMEVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVN 493 (836)
Q Consensus 414 ~gi~~~I~gR~K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~ 493 (836)
|++++|+||+||+||||+||++++.+|++|+|+.|+||||++ +.+||++||+||++|+|+|++|||||++
T Consensus 244 -~i~~~v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~---------~~dCY~vLg~ih~~~~pip~~fkDYIa~ 313 (743)
T PRK10872 244 -GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAER---------LQDCYAALGIVHTHYRHLPDEFDDYVAN 313 (743)
T ss_pred -CCceEEEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECC---------HHHHHHHHHHHHhhccCCcchhhhcccC
Confidence 778999999999999999999999999999999999999985 8899999999999999999999999999
Q ss_pred CCCCCCcceEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhhccccCCccccccccc------cchHHHhccCCCCCCC
Q 003255 494 PKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMD------ESDIEASSSLSKDTDD 567 (836)
Q Consensus 494 PK~NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~~~~~~~~~~~~~------~~l~~~~~~~~~~~e~ 567 (836)
||+||||||||+|.+|+|.++||||||..||.+||+|+||||+||++...+.....++ ++|.+|++...++.||
T Consensus 314 PK~NGYqSLHttv~~~~g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~~~~~~~~~~~~~~wLr~lle~~~~~~d~~ef 393 (743)
T PRK10872 314 PKPNGYQSIHTVVLGPGGKTVEIQIRTRQMHEDAELGVAAHWKYKEGAAAGGGRSGHEDRIAWLRKLIAWQEEMADSGEM 393 (743)
T ss_pred CCCCCcceeEEEEECCCCcEEEEEEEcHHHHHHHhhhHHHHHhccCCCCccccccchHHHHHHHHHHHHHHhccCCHHHH
Confidence 9999999999999999999999999999999999999999999998653210111122 3445666666667899
Q ss_pred CCccccc-------ccccccc---ccCCCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003255 568 HNPLDTD-------LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 568 ~~~~~~d-------vftPkg~---Lp~G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
++.+|.| ||||+|+ ||.|+|++|| +|++|+|||| ||+ +||++|+|++||+|||+|+
T Consensus 394 ~e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkv-----ng~--~v~l~~~L~~GD~VeIits 466 (743)
T PRK10872 394 LDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKI-----GGR--IVPFTYQLQMGDQIEIITQ 466 (743)
T ss_pred HHHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEEE-----CCE--ECCCCcCCCCCCEEEEEeC
Confidence 9999877 4799995 7999997665 9999999999 999 9999999999999999999
Q ss_pred CC--cchhHHH----HHHHhHhhhh-hhcccCCCCchhhhhhhcccccCCeEeecccccc
Q 003255 631 SF--QIKCWEA----YARLYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGR 683 (836)
Q Consensus 631 ~~--p~~dWL~----~v~t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~ 683 (836)
++ |++|||+ ||+|+||+++ +-|| ++.+.+.+++. |+-.+...|.+
T Consensus 467 ~~~~Ps~dWL~~~lg~v~T~rAR~kIr~~~--k~~~~~~~i~~------Gr~lL~k~l~~ 518 (743)
T PRK10872 467 KQPNPSRDWLNPNLGYVTTSRGRSKIHAWF--RKQDRDKNILA------GRQILDDELEH 518 (743)
T ss_pred CCCCCChhHhccccCeeeCHHHHHHHHHHH--HHHHHHHHHHH------HHHHHHHHHHh
Confidence 84 9999999 9999999999 5554 56666667666 66666666654
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=5.1e-121 Score=1070.55 Aligned_cols=455 Identities=34% Similarity=0.527 Sum_probs=406.2
Q ss_pred CHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhcHHH
Q 003255 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEV 179 (836)
Q Consensus 100 ~~~~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVEDT~~T~eeI~~~FG~eV 179 (836)
+.+.+.+|+.||.++|.||+|++|+||+.||++||.||+++++ |.++++||||||+||||++|.++|++.||++|
T Consensus 19 ~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~-----D~~ti~AaLLHDvvEDt~~t~e~i~~~FG~~V 93 (702)
T PRK11092 19 QIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRL-----DYETLMAALLHDVIEDTPATYQDMEQLFGKSV 93 (702)
T ss_pred HHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHHHhcccchhhhCCCCHHHHHHHHCHHH
Confidence 4468999999999999999999999999999999999999874 68999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHHhhhhhcCCChHHHHHHHHH
Q 003255 180 AKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQE 259 (836)
Q Consensus 180 A~LV~gVTKl~~i~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~eKq~~iA~E 259 (836)
|.||+||||++.++.. .....|+|++||||++|++|+||++|||||||||||||..+|+++|+++|+|
T Consensus 94 a~lV~gvTk~~~l~~~------------~~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~iA~E 161 (702)
T PRK11092 94 AELVEGVSKLDKLKFR------------DKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARE 161 (702)
T ss_pred HHHHHHHHhhcccccc------------chhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHHHHHH
Confidence 9999999999876431 1123489999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCCccccccccccccCCCCCccCccCCCCcccch
Q 003255 260 TLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTF 339 (836)
Q Consensus 260 Tl~IYaPLA~RLGi~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (836)
|++||||||||||||+||||||||||+||+|+.|+.|++.|.+
T Consensus 162 Tl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~------------------------------------- 204 (702)
T PRK11092 162 TLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKA------------------------------------- 204 (702)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-------------------------------------
Confidence 9999999999999999999999999999999999999999875
Q ss_pred hhhhhhHHhhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEE
Q 003255 340 DEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVT 419 (836)
Q Consensus 340 ~~~~~~~k~ll~av~~fd~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~ 419 (836)
.+.+|+.|++++. ..+++.|++. |++++
T Consensus 205 ---------------------~~~~r~~~i~~~~----------------------~~l~~~l~~~---------~i~~~ 232 (702)
T PRK11092 205 ---------------------ARGNRKEMIQKIL----------------------SEIEGRLQEA---------GIPCR 232 (702)
T ss_pred ---------------------HHHHHHHHHHHHH----------------------HHHHHHHHHc---------CCcEE
Confidence 4778999999876 2345566653 78899
Q ss_pred EEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCCCCCCC
Q 003255 420 LSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGY 499 (836)
Q Consensus 420 I~gR~K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~NGY 499 (836)
|+||+||+||||+||++|+.+|++|+|++|+||||++ +.|||++||+||++|+|+|++|||||++||+|||
T Consensus 233 i~~R~K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~---------~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~NgY 303 (702)
T PRK11092 233 VSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDD---------SDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGY 303 (702)
T ss_pred EEeccCCHHHHHHHHHHcCCChhHhccceeEEEEECC---------HHHHHHHHHHHHhcCCCCcCccccccCCCCCCCC
Confidence 9999999999999999999999999999999999985 8899999999999999999999999999999999
Q ss_pred cceEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhhccccCCcccccc-c---cccchHHHhccCCCCCCCCCccccc-
Q 003255 500 QSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS-S---MDESDIEASSSLSKDTDDHNPLDTD- 574 (836)
Q Consensus 500 qSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~~~~~~~~~~-~---~~~~l~~~~~~~~~~~e~~~~~~~d- 574 (836)
|||||+|.+|+|.++||||||..||.+||+|+||||+||++.....+.. . +-+++.+|++...++.||++.++.|
T Consensus 304 qSLHt~v~g~~g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~~~~~~~~~~~~wlr~ll~~~~~~~~~~ef~~~~~~dl 383 (702)
T PRK11092 304 QSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETGTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDL 383 (702)
T ss_pred ceEEEEEECCCCcEEEEEEEcHHHHHHHhhhhHhhhhhccCCCccchhHHHHHHHHHHHHHHHhhcCChHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999998643211100 1 1133556666666678999999877
Q ss_pred ------ccccccc---ccCCCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCC--Ccchh
Q 003255 575 ------LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--FQIKC 636 (836)
Q Consensus 575 ------vftPkg~---Lp~G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~--~p~~d 636 (836)
+|||+|+ ||.|+|++|| +|+||+|||| ||+ +|||+|+|+|||+|||+|++ .|++|
T Consensus 384 ~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkV-----Ng~--~vpL~~~L~~Gd~VeIiT~~~~~P~~d 456 (702)
T PRK11092 384 FPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARV-----DRQ--PYPLSQPLTSGQTVEIITAPGARPNAA 456 (702)
T ss_pred ccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEE-----CCE--ECCCCccCCCCCEEEEEeCCCCCCChH
Confidence 4799995 7999997766 9999999999 999 99999999999999999997 39999
Q ss_pred HHHHHHHhHhhhh-hhcccCCCCchhhhhhhcccccCCeEeeccccccc
Q 003255 637 WEAYARLYKKASD-EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGRL 684 (836)
Q Consensus 637 WL~~v~t~k~~~~-~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~~ 684 (836)
||+||+|+||+++ +-|| ++.+.+.+++. |+--+...|.++
T Consensus 457 WL~~v~T~rAr~kIr~~~--r~~~~~~~i~~------Gr~lL~~~l~~~ 497 (702)
T PRK11092 457 WLNFVVSSKARAKIRQLL--KNLKRDDSVSL------GRRLLNHALGGS 497 (702)
T ss_pred HHHHhhhHHHHHHHHHHH--HhhhHHHHHHH------HHHHHHHHHHhc
Confidence 9999999999999 5555 67777777777 777777777665
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=5.7e-114 Score=1012.55 Aligned_cols=446 Identities=37% Similarity=0.584 Sum_probs=394.7
Q ss_pred HHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhcHHHHHHHHHh
Q 003255 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV 186 (836)
Q Consensus 107 A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVEDT~~T~eeI~~~FG~eVA~LV~gV 186 (836)
|+.||.++|.||+|++|+||+.||++||.||+++++ |.++++||||||+||||++|.++|++.||++|+.||++|
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~-----D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~v 75 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGM-----DEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGV 75 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCC-----CHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHH
Confidence 688999999999999999999999999999999874 689999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHHhhhhhcCCChHHHHHHHHHhHHHHHH
Q 003255 187 SRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266 (836)
Q Consensus 187 TKl~~i~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~eKq~~iA~ETl~IYaP 266 (836)
||++.++... ....|+|++||||++|+.|+||++|||||||||||+|..+|+++|+++|+||++||||
T Consensus 76 Tk~~~~~~~~------------~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaP 143 (683)
T TIGR00691 76 TKITKLKKKS------------RQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAP 143 (683)
T ss_pred HHhcccccch------------hhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHH
Confidence 9998764311 1234899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCCccccccccccccCCCCCccCccCCCCcccchhhhhhhH
Q 003255 267 LASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTTFDEHVLSM 346 (836)
Q Consensus 267 LA~RLGi~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (836)
||||||||+||||||||||+||+|+.|+.|++.|++
T Consensus 144 lA~rLG~~~ik~eLedl~f~~l~p~~y~~i~~~l~~-------------------------------------------- 179 (683)
T TIGR00691 144 LAHRLGMSSIKTELEDLSFKYLYPKEYENIKSLVNE-------------------------------------------- 179 (683)
T ss_pred HHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------------------------------------
Confidence 999999999999999999999999999999999975
Q ss_pred HhhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceEEEEEeecC
Q 003255 347 KDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEVTLSSRLKS 426 (836)
Q Consensus 347 k~ll~av~~fd~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~~I~gR~K~ 426 (836)
.+.+|+.+++.+. ..+++.|.+ .+++++|+||+|+
T Consensus 180 --------------~~~~~~~~~~~~~----------------------~~l~~~l~~---------~~i~~~i~~R~K~ 214 (683)
T TIGR00691 180 --------------QKVNRENKLEKFK----------------------SELEKRLED---------SGIEAELEGRSKH 214 (683)
T ss_pred --------------HHHHHHHHHHHHH----------------------HHHHHHHHh---------cCCceEEEeeeCC
Confidence 4778999998876 124455555 3678899999999
Q ss_pred hhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCCCCCCCcceEEEE
Q 003255 427 LYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAV 506 (836)
Q Consensus 427 ~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~NGYqSLHt~V 506 (836)
+||||+||++++.+|++|+|++|+||||++ +.|||.++|+||++|+|+|++|||||++||+||||||||+|
T Consensus 215 ~~Si~~Km~~k~~~~~~i~Di~~~RIi~~~---------~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v 285 (683)
T TIGR00691 215 LYSIYQKMTRKGQNFDEIHDLLAIRIIVKS---------ELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTV 285 (683)
T ss_pred HHHHHHHHHhcCCCHHHcccceeEEEEECC---------HHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEE
Confidence 999999999999999999999999999985 88999999999999999999999999999999999999999
Q ss_pred EcCCCcEEEEEEechhhHHHHHhhhhhhhhccccCCcccccc---ccccchHHHhccCCCCCCCCCccccc-------cc
Q 003255 507 QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSIS---SMDESDIEASSSLSKDTDDHNPLDTD-------LF 576 (836)
Q Consensus 507 ~~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~~~~~~~~~~---~~~~~l~~~~~~~~~~~e~~~~~~~d-------vf 576 (836)
.+|+|.++||||||..||.|||+|+||||+||++........ .+-+++.+|+....++.+|++.++.| +|
T Consensus 286 ~~~~g~~~EvQIRT~~mh~~Ae~Gvaahw~yk~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~k~~l~~~~i~vf 365 (683)
T TIGR00691 286 RGPKGLPVEIQIRTEDMDRVAEYGIAAHWIYKEGNPQKEALIDDMRWLNYLVEWQQESANFFEFIENLKSDLFNEEIYVF 365 (683)
T ss_pred EcCCCCEEEEEEEehHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHhhcccchhHHHHhhHHhccCceEEE
Confidence 999999999999999999999999999999998643211111 11133566666666678999988877 57
Q ss_pred ccccc---ccCCCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCC--CcchhHHHHHHHh
Q 003255 577 QKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS--FQIKCWEAYARLY 644 (836)
Q Consensus 577 tPkg~---Lp~G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~--~p~~dWL~~v~t~ 644 (836)
||+|+ ||.|+||+|| +|++|+|||| ||+ +||++++|++||+|||+|++ +|+++||+||+|+
T Consensus 366 TPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~v-----ng~--~v~l~~~l~~gd~vei~t~~~~~P~~dWL~~v~T~ 438 (683)
T TIGR00691 366 TPKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKV-----NGK--IVPLDKELENGDVVEIITGKNSNPSVIWLNFVVTS 438 (683)
T ss_pred CCCCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEE-----CCE--ECCCCccCCCCCEEEEEeCCCCCCCHHHHHHHhhH
Confidence 99995 7999997665 9999999999 999 99999999999999999998 5999999999999
Q ss_pred Hhhhh--hhcccCCCCchhhhhhhcccccCCeEeecccccc
Q 003255 645 KKASD--EWWCQPGHGDWCTCLEKYTLCRDGMYHKQDQFGR 683 (836)
Q Consensus 645 k~~~~--~~~~~~~~g~~~~~l~~y~~~~~g~~h~~d~~~~ 683 (836)
||+++ +|+ +..+.+.+++. |+--+...|.+
T Consensus 439 rAR~kIr~~~---k~~~r~~~i~~------G~~lLek~l~~ 470 (683)
T TIGR00691 439 KARNKIRQWL---KKLRREVAISE------GKNILEKELGR 470 (683)
T ss_pred HHHHHHHHHH---HHHHHHHHHHH------HHHHHHHHHHH
Confidence 99999 555 55556666666 66555555544
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=5e-74 Score=616.17 Aligned_cols=329 Identities=43% Similarity=0.641 Sum_probs=289.6
Q ss_pred CCCHHHHHHHHHHHHHhhcCCccccC-cchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhc
Q 003255 98 IFNDEQVQKAIAFAKRAHHGQFRKTG-DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176 (836)
Q Consensus 98 ~~~~~~l~~A~~fA~~aH~GQ~RksG-ePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVEDT~~T~eeI~~~FG 176 (836)
.|+...+-+|+.+|+.+|+||+|+++ +||+.||+.+|.|||++++ |...++||+||||||||..+.++|.+.||
T Consensus 71 t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~-----ds~Vv~AaiLHDVVDDt~~S~eeI~~~FG 145 (543)
T KOG1157|consen 71 TFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGA-----DSTVVVAAILHDVVDDTFMSYEEILRHFG 145 (543)
T ss_pred cCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhc-----chHHHHHHHHHHHHhhccCCHHHHHHHhC
Confidence 45677899999999999999999975 5999999999999999985 57899999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHHhhhhhcCCChHHHHHH
Q 003255 177 DEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAV 256 (836)
Q Consensus 177 ~eVA~LV~gVTKl~~i~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~eKq~~i 256 (836)
..||.||++||+.+.+++..|+. ..|.+++| |+.+++. .|++||||||+|||||+|..+||-++++.
T Consensus 146 ~gVa~LV~EvtddKnL~K~eRk~-----------l~qiet~~-~fyak~s-~RAvLIkLADKLdNMRdL~~lpPvgwq~~ 212 (543)
T KOG1157|consen 146 TGVADLVEEVTDDKNLSKLERKN-----------LTQIETVE-MFYAKAS-ARAVLIKLADKLDNMRDLYALPPVGWQRF 212 (543)
T ss_pred ccHHHHHHHHhcccchhHHHHHH-----------HHHHHHHH-HHHHHHH-HHHHHHHHHHHHhhhhhhhccCcchhHHH
Confidence 99999999999999988654331 25788888 6777764 99999999999999999999999999999
Q ss_pred HHHhHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCCccccccccccccCCCCCccCccCCCCcc
Q 003255 257 AQETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESF 336 (836)
Q Consensus 257 A~ETl~IYaPLA~RLGi~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 336 (836)
++||+.||||||+++|++..+.+||+|||+||+|..|-++...|...
T Consensus 213 r~e~lfIwapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~--------------------------------- 259 (543)
T KOG1157|consen 213 RKETLFIWAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDS--------------------------------- 259 (543)
T ss_pred HHHHHHHhhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcc---------------------------------
Confidence 99999999999999999999999999999999999999999999741
Q ss_pred cchhhhhhhHHhhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCc
Q 003255 337 TTFDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGM 416 (836)
Q Consensus 337 ~~~~~~~~~~k~ll~av~~fd~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi 416 (836)
|| +..|...+ ..+++.|..+ |+
T Consensus 260 -------------------~~--------~~mi~~~~----------------------~~l~~~l~~a---------~i 281 (543)
T KOG1157|consen 260 -------------------FD--------EAMITSAI----------------------EKLEQALKKA---------GI 281 (543)
T ss_pred -------------------cc--------hHHHHHHH----------------------HHHHHHHHhc---------cc
Confidence 11 11122111 1123333332 33
Q ss_pred -eEEEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCCC
Q 003255 417 -EVTLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPK 495 (836)
Q Consensus 417 -~~~I~gR~K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK 495 (836)
.+-|+||.|++||||+||.|++...+||+|+.|+|+||++ ..+||+.+|+||++|..+|++.||||+.||
T Consensus 282 ~~~~i~gr~ks~ysi~~kmlk~~~~~dei~di~glr~i~~~---------~~~cyk~~~vv~slw~evp~k~kdyia~pk 352 (543)
T KOG1157|consen 282 SYHVIKGRHKSLYSIYKKMLKKKLTPDEIHDIHGLRLIVDN---------ESDCYKALGVVHSLWSEVPGKLKDYIAHPK 352 (543)
T ss_pred eeEEEecchhhHHHHHHHHHhcCCCHHHhhhhcceEEEEcC---------chHHHHHHHHHHHHHHhCcchhhhhhcCcc
Confidence 3679999999999999999999999999999999999986 469999999999999999999999999999
Q ss_pred CCCCcceEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhhccccCCcc
Q 003255 496 PSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL 544 (836)
Q Consensus 496 ~NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~~~~~~ 544 (836)
.||||||||+|++..-.|+||||||..||.-||+|.||||+||++...+
T Consensus 353 ~ngy~slh~~v~~d~~~plevqirt~em~~~a~~g~aah~~yk~g~~~~ 401 (543)
T KOG1157|consen 353 FNGYQSLHTVVMVDGTRPLEVQIRTMEMHLQAEFGFAAHWRYKEGKTSS 401 (543)
T ss_pred ccccceeeeEEecCCcceeEEEEeeeccccccccchhhHhhhhcCCCCH
Confidence 9999999999998666799999999999999999999999999885443
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=1e-38 Score=312.27 Aligned_cols=153 Identities=48% Similarity=0.747 Sum_probs=97.7
Q ss_pred HHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhcHHHHHHHHHh
Q 003255 107 AIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGV 186 (836)
Q Consensus 107 A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVEDT~~T~eeI~~~FG~eVA~LV~gV 186 (836)
|+.||.++|.||++++|+||+.||++||.+|++++. |+++++||||||++|||..+ ++|++.||++|+++|.++
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~-----d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~l 74 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGL-----DEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDAL 74 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS--------HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHH
Confidence 789999999999999999999999999999998864 68999999999999999656 999999999999999999
Q ss_pred hhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHHhhhhhcCCChHHHHHHHHHhHHHHHH
Q 003255 187 SRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQETLLIWCS 266 (836)
Q Consensus 187 TKl~~i~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~eKq~~iA~ETl~IYaP 266 (836)
|+++.+.... . ......+.+++|+||++|++|+||++|||||||||||++...|+++++++|+||+++|+|
T Consensus 75 t~~~~~~~~~-~--------~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~ap 145 (153)
T PF13328_consen 75 TKIKKLSKKP-W--------EERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAP 145 (153)
T ss_dssp ---TTS-HH------------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT--------------
T ss_pred Hhcccccccc-c--------hhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhcccccccc
Confidence 9998876531 0 112356899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcChH
Q 003255 267 LASRLGLW 274 (836)
Q Consensus 267 LA~RLGi~ 274 (836)
||||||||
T Consensus 146 LA~rLGiw 153 (153)
T PF13328_consen 146 LAHRLGIW 153 (153)
T ss_dssp --------
T ss_pred ccccccCC
Confidence 99999998
No 7
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.94 E-value=6e-28 Score=224.53 Aligned_cols=108 Identities=37% Similarity=0.548 Sum_probs=93.8
Q ss_pred EeecChhHHHHHHHhcCC---CCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCCCCCC
Q 003255 422 SRLKSLYSIFSKMRRKDV---GIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 498 (836)
Q Consensus 422 gR~K~~ySI~~Km~rk~~---~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~NG 498 (836)
+|+|+++|+++|+.|++. ++.+|+|++|+||||.. .+|||.++++|++.|.+.+.+++|||+.||.||
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~---------~~d~~~v~~~l~~~~~~~~~~~~d~i~~~~~~G 71 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYF---------PDDCYKVLGLLHKLFDVKIDRSKDYIANPKSNG 71 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESS---------CCHHHHHHHHHHTHSSCEEEEEEETTTT--TTS
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEee---------HHHHHHHHHHHHHcCCcccccccccccccccCC
Confidence 699999999999999874 78999999999999985 679999999999999999999999999999999
Q ss_pred CcceEEEE---EcCCCcEEEEEEechhhHHHHHhhhhhhhhcccc
Q 003255 499 YQSLHTAV---QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 540 (836)
Q Consensus 499 YqSLHt~V---~~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~~ 540 (836)
|||+|++| ..+.+.++||||||.+||.|||..| ||.||.+
T Consensus 72 Yrs~H~~v~~~~~~~~~~~EiQIrT~~~~~waei~h--~~~YK~~ 114 (115)
T PF04607_consen 72 YRSLHYIVPENESFKGYPFEIQIRTLLQHAWAEIEH--DLRYKSS 114 (115)
T ss_dssp --EEEEEEEETTECEEEEEEEEEEEHHHHHHHHHHH--HHHHHCT
T ss_pred cEeeEeeeeecccCCCceeeeeeccHHHHHHHHHHH--HHhCCCC
Confidence 99999999 3457889999999999999999655 8999964
No 8
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.94 E-value=5.8e-27 Score=222.78 Aligned_cols=118 Identities=42% Similarity=0.714 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCCC---CcccceeeEEEEEcCCCCCCCCccHHHHHHHH
Q 003255 397 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI---HKVYDARALRVVVGDKNGTLHGPAIQCCYSLL 473 (836)
Q Consensus 397 ~~~~~L~~~~~~~~~~~~gi~~~I~gR~K~~ySI~~Km~rk~~~~---~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vl 473 (836)
.|++.|++.... +..+.|++|+|+++|+++||.+++.+. ++|+|++|+||||+. ..|||.++
T Consensus 6 ~l~~~L~~~~~~------~~~~~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~---------~~d~~~v~ 70 (129)
T cd05399 6 EIADLLRDAGII------GRVASVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLF---------VDDCYRVL 70 (129)
T ss_pred HHHHHHHHcCCC------CCCcEEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeC---------HHHHHHHH
Confidence 456666664210 115689999999999999999998777 999999999999985 78999999
Q ss_pred HHHHhcCCCccccccccccCCCCCCCcceEEEEEcCC---CcEEEEEEechhhHHHHHh
Q 003255 474 DIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD---GSALEVQIRTQKMHEYAEH 529 (836)
Q Consensus 474 giIh~~~~pi~~r~kDYIa~PK~NGYqSLHt~V~~p~---g~~vEIQIRT~~Mh~~AE~ 529 (836)
+.|++.|+++|++++|||+.||+|||||+|++|..++ |.++||||||..||.|||.
T Consensus 71 ~~l~~~f~~~~~~~~D~~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 71 DLLHSLFKVIPGRVKDYIAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred HHHHhCCcccCccccCCcCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 9999999999999999999999999999999999887 8999999999999999984
No 9
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.94 E-value=2.5e-27 Score=244.10 Aligned_cols=136 Identities=31% Similarity=0.388 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCCC------CcccceeeEEEEEcCCCCCCCCccHHHHH
Q 003255 397 ACEEALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGI------HKVYDARALRVVVGDKNGTLHGPAIQCCY 470 (836)
Q Consensus 397 ~~~~~L~~~~~~~~~~~~gi~~~I~gR~K~~ySI~~Km~rk~~~~------~eI~Dl~giRIIv~~~~~~~~~~~~~dCY 470 (836)
.....++.++.....|+|..+ |++|+|++.||..|++|||.++ ++|+|++|+||+|. |++|.|
T Consensus 34 ~k~~~~~~~~~~~~~~~pie~--Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~c~---------F~~DI~ 102 (231)
T COG2357 34 TKLKILRDEYEKLHDYNPIEH--VTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRIICQ---------FVDDIY 102 (231)
T ss_pred HHHHHHHHHHHhhcCCCchHH--HhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEeee---------hHhhHH
Confidence 344566777777788888764 7899999999999999999544 58999999999998 589999
Q ss_pred HHHHHHHhcCCCccccccccccCCCCCCCcceEEEEEcCC-------CcEEEEEEechhhHHHHHhhhhhhhhccccCCc
Q 003255 471 SLLDIVHRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQGPD-------GSALEVQIRTQKMHEYAEHGLAAHWLYKETGNK 543 (836)
Q Consensus 471 ~vlgiIh~~~~pi~~r~kDYIa~PK~NGYqSLHt~V~~p~-------g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~~~~~ 543 (836)
.+..+|.+.........||||.+||+|||||+|++|..|- +..+||||||.+||+||++.|. .+||.++..
T Consensus 103 ~v~~~l~~~~d~~iv~~kDyi~n~k~~GYRS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH~--l~YKy~~~~ 180 (231)
T COG2357 103 RVVDLLKSRKDFTIVEEKDYIRNPKPNGYRSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEHK--LRYKYGGEV 180 (231)
T ss_pred HHHHHHhcccCccchhHHHHHhCCCCCCCceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHHH--hhccccccC
Confidence 9999999886666678999999999999999999999773 3799999999999999999995 689987776
Q ss_pred cc
Q 003255 544 LQ 545 (836)
Q Consensus 544 ~~ 545 (836)
|.
T Consensus 181 Pe 182 (231)
T COG2357 181 PE 182 (231)
T ss_pred hH
Confidence 63
No 10
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=99.93 E-value=6.6e-27 Score=272.66 Aligned_cols=91 Identities=30% Similarity=0.431 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003255 737 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 812 (836)
Q Consensus 737 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~dl~~~~v~VftP~G~v~~Lp~GsT~~DfAy~ih--v~~~~-- 812 (836)
.+++.|||+++|||++..|+.| |++++|.|||+|+||||||||+|++||.||||+||||+|| +|++|
T Consensus 354 ~~~~~Wlr~lle~q~~~~d~~e---------f~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~g 424 (701)
T COG0317 354 EEKIAWLRQLLEWQEESADSGE---------FLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIG 424 (701)
T ss_pred hHHHHHHHHHHHHHHhcCCcHH---------HHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeE
Confidence 6799999999999999987655 4799999999999999999999999999999999999999 99988
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003255 813 VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 813 ~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
|||||++|||+|+|+|||+|||+|
T Consensus 425 AkVnG~ivpl~~~Lk~Gd~VEIit 448 (701)
T COG0317 425 AKVNGRIVPLTTKLQTGDQVEIIT 448 (701)
T ss_pred EEECCEEeccceecCCCCEEEEEe
Confidence 699999999999999999999997
No 11
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=99.92 E-value=9.1e-26 Score=266.71 Aligned_cols=91 Identities=22% Similarity=0.249 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003255 737 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 812 (836)
Q Consensus 737 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~dl~~~~v~VftP~G~v~~Lp~GsT~~DfAy~ih--v~~~~-- 812 (836)
.++++|||+|++||++..++.+| ++.+|.|||+++||||||+|+|+.||.||||+||||+|| +|++|
T Consensus 353 ~~~~~wlr~ll~~~~~~~~~~ef---------~~~~~~dl~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~g 423 (702)
T PRK11092 353 IRAQRWMQSLLELQQSAGSSFEF---------IESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVG 423 (702)
T ss_pred HHHHHHHHHHHHHHhhcCChHHH---------HHHHHhhhccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEE
Confidence 34589999999999987665555 699999999999999999999999999999999999999 99887
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003255 813 VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 813 ~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
|||||++|||+|+|+|||+|||+|
T Consensus 424 AkVNg~~vpL~~~L~~Gd~VeIiT 447 (702)
T PRK11092 424 ARVDRQPYPLSQPLTSGQTVEIIT 447 (702)
T ss_pred EEECCEECCCCccCCCCCEEEEEe
Confidence 699999999999999999999997
No 12
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=99.89 E-value=5.4e-24 Score=251.58 Aligned_cols=92 Identities=24% Similarity=0.433 Sum_probs=85.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce-
Q 003255 736 INNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL- 812 (836)
Q Consensus 736 ~~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~dl~~~~v~VftP~G~v~~Lp~GsT~~DfAy~ih--v~~~~- 812 (836)
++.++.|||+|+|||++..|+.+| ++++|.|||+++||||||+|+++.||.||||+||||+|| +|++|
T Consensus 370 ~~~~~~wLr~lle~~~~~~d~~ef---------~e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~ 440 (743)
T PRK10872 370 HEDRIAWLRKLIAWQEEMADSGEM---------LDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCI 440 (743)
T ss_pred hHHHHHHHHHHHHHHhccCCHHHH---------HHHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhce
Confidence 467899999999999987776665 689999999999999999999999999999999999999 77776
Q ss_pred -EEECCEEeCCCccCCCCCEEEEeC
Q 003255 813 -VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 813 -~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
|+|||++|||+|+|+|||+|||+|
T Consensus 441 gAkvng~~v~l~~~L~~GD~VeIit 465 (743)
T PRK10872 441 GAKIGGRIVPFTYQLQMGDQIEIIT 465 (743)
T ss_pred EEEECCEECCCCcCCCCCCEEEEEe
Confidence 699999999999999999999997
No 13
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=99.86 E-value=1.7e-22 Score=239.39 Aligned_cols=91 Identities=31% Similarity=0.444 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--
Q 003255 737 NNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL-- 812 (836)
Q Consensus 737 ~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~dl~~~~v~VftP~G~v~~Lp~GsT~~DfAy~ih--v~~~~-- 812 (836)
+.++.|||+|++||++..++.+ |++.+|.|+|.++||||||+|+++.||.||||+||||+|| +|++|
T Consensus 327 ~~~~~wl~~~~~~~~~~~~~~~---------~~~~~k~~l~~~~i~vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~ 397 (683)
T TIGR00691 327 IDDMRWLNYLVEWQQESANFFE---------FIENLKSDLFNEEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTG 397 (683)
T ss_pred HHHHHHHHHHHHHHhhcccchh---------HHHHhhHHhccCceEEECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeE
Confidence 5678999999999998766545 5799999999999999999999999999999999999999 88877
Q ss_pred EEECCEEeCCCccCCCCCEEEEeC
Q 003255 813 VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 813 ~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
|+|||++|||+|+|+|||+|||+|
T Consensus 398 a~vng~~v~l~~~l~~gd~vei~t 421 (683)
T TIGR00691 398 AKVNGKIVPLDKELENGDVVEIIT 421 (683)
T ss_pred EEECCEECCCCccCCCCCEEEEEe
Confidence 699999999999999999999997
No 14
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.49 E-value=1.7e-14 Score=121.38 Aligned_cols=56 Identities=41% Similarity=0.585 Sum_probs=51.3
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003255 781 VIVCWPNGEIMRLRSGSTAADAAMKVG--LEGK--LVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 781 v~VftP~G~v~~Lp~GsT~~DfAy~ih--v~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
|.|++|+|++.+||.|+||.||||.|| ++.+ .|+|||+.|+|+|+|++||+|||+|
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 579999999999999999999999999 6654 5799999999999999999999997
No 15
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.90 E-value=1.2e-09 Score=96.50 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=42.6
Q ss_pred CCeEeCCCCCCHHHHHHHhC--CCCce-----EEECCEEeCCCccCCCCCEEEEeC
Q 003255 788 GEIMRLRSGSTAADAAMKVG--LEGKL-----VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 788 G~v~~Lp~GsT~~DfAy~ih--v~~~~-----~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
++.+.||.|+|+.||||.|| +++.+ ++ |||.|+++|+|+|||+|+|+|
T Consensus 22 ~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 22 PDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 57788999999999999999 66642 36 999999999999999999997
No 16
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.80 E-value=5.6e-09 Score=92.11 Aligned_cols=49 Identities=35% Similarity=0.358 Sum_probs=42.2
Q ss_pred CCeEeCCCCCCHHHHHHHhC--CCC--ceEE-------ECCEEeCCCccCCCCCEEEEeC
Q 003255 788 GEIMRLRSGSTAADAAMKVG--LEG--KLVL-------VNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 788 G~v~~Lp~GsT~~DfAy~ih--v~~--~~~~-------VNg~lvpl~~~L~~GD~VeI~t 836 (836)
.+.+.||.|||+.|||++|| ++. +.+. +|||.|+++++|+|||+|||.+
T Consensus 16 ~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 16 DEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 46789999999999999999 333 3344 5999999999999999999986
No 17
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.74 E-value=2.8e-08 Score=81.83 Aligned_cols=56 Identities=45% Similarity=0.568 Sum_probs=49.9
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhCCC--C--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003255 781 VIVCWPNGEIMRLRSGSTAADAAMKVGLE--G--KLVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 781 v~VftP~G~v~~Lp~GsT~~DfAy~ihv~--~--~~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
+|||+|+|..+.+|.|.|+.|++..++.+ . ..+.|||++++++++|++||.||++|
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 58999999999999999999999888733 2 33699999999999999999999986
No 18
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.20 E-value=5.3e-07 Score=76.15 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=43.2
Q ss_pred cccccccc---ccCCCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003255 574 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 629 (836)
Q Consensus 574 dvftPkg~---Lp~G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~t 629 (836)
.+++|.|. +|.|+|+.++ ++.+|++|+| ||+ +|+|+++|++||+|+|+|
T Consensus 2 ~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~V-----ng~--~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 2 RVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKV-----NGQ--LVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEE-----TTE--EEETTSBB-SSEEEEEEE
T ss_pred EEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEE-----cCE--ECCCCCCcCCCCEEEEEC
Confidence 36789994 7999997776 7899999999 999 999999999999999986
No 19
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.15 E-value=6.3e-06 Score=66.07 Aligned_cols=54 Identities=39% Similarity=0.521 Sum_probs=47.2
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCCC--C--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003255 783 VCWPNGEIMRLRSGSTAADAAMKVGLE--G--KLVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 783 VftP~G~v~~Lp~GsT~~DfAy~ihv~--~--~~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
+..|+|..+.+|.|+|+.|++-.++.+ . ..++|||++++|+++|.+||.||++|
T Consensus 3 ~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 3 IFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 567889999999999999999988732 2 33699999999999999999999986
No 20
>PRK01777 hypothetical protein; Validated
Probab=98.02 E-value=1.3e-05 Score=74.03 Aligned_cols=56 Identities=30% Similarity=0.369 Sum_probs=45.3
Q ss_pred ceEEEEcCCC---CeEeCCCCCCHHHHHHHhCCCCc---------eEEECCEEeCCCccCCCCCEEEEe
Q 003255 779 EVVIVCWPNG---EIMRLRSGSTAADAAMKVGLEGK---------LVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 779 ~~v~VftP~G---~v~~Lp~GsT~~DfAy~ihv~~~---------~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
+++|. +|+- .-+++|.|+|+.|+.-+.|+... .+-|||+.|.++++|++||+|||.
T Consensus 7 ~V~ya-~~~~~~~~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIy 74 (95)
T PRK01777 7 EVVYA-LPERQYLQRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIY 74 (95)
T ss_pred EEEEE-CCCceEEEEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEe
Confidence 34554 5543 35689999999999999995332 478999999999999999999995
No 21
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=97.97 E-value=1.6e-05 Score=70.42 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=41.0
Q ss_pred CeEeCCCCCCHHHHHHHhC--C--CCceEEECC-EEeCCCccCCCCCEEEEeC
Q 003255 789 EIMRLRSGSTAADAAMKVG--L--EGKLVLVNG-QLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 789 ~v~~Lp~GsT~~DfAy~ih--v--~~~~~~VNg-~lvpl~~~L~~GD~VeI~t 836 (836)
+-+-||.|+|+.|||+.|| + +-+.|.|-| |.|..+|+|++||+|+|+|
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEEC
Confidence 4567899999999999999 3 235577776 9999999999999999986
No 22
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.89 E-value=1e-05 Score=91.72 Aligned_cols=46 Identities=30% Similarity=0.414 Sum_probs=40.9
Q ss_pred eEeCCCCCCHHHHHHHhC--CCCce-----EEECCEEeCCCccCCCCCEEEEeC
Q 003255 790 IMRLRSGSTAADAAMKVG--LEGKL-----VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 790 v~~Lp~GsT~~DfAy~ih--v~~~~-----~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
.+.||.|||+.||||.|| ++..+ ++ |+|.|+++|+|+|||+|+|+|
T Consensus 342 ~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~~-~~~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 342 AFLLPKGSTARDLAYKIHTDIGEGFLYAIDAR-TKRRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred eEEECCCCCHHHHHHHHHHHHHhhceehhccc-CCcccCCCcEecCCCEEEEEe
Confidence 899999999999999999 55443 35 899999999999999999986
No 23
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.83 E-value=3.8e-05 Score=65.41 Aligned_cols=53 Identities=38% Similarity=0.549 Sum_probs=47.1
Q ss_pred EcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003255 784 CWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 836 (836)
Q Consensus 784 ftP~G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 836 (836)
++=||+.+++|.|.|..|+.-+.++.... +-|||.++| .++.|++||+|||++
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLAREGLAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVH 61 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHhcCCCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEE
Confidence 44589999999999999999999966654 589999999 999999999999974
No 24
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=97.80 E-value=5.5e-05 Score=77.18 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=54.1
Q ss_pred hcCCccccCc--chhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcc---cccccC--------------CHHHHHHHh
Q 003255 115 HHGQFRKTGD--PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV---VDDACE--------------SLGSIEEEF 175 (836)
Q Consensus 115 H~GQ~RksGe--PYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDv---VEDT~~--------------T~eeI~~~F 175 (836)
+.|+...+|+ ||+.|++.+|.+....+. |.+.++||||||+ ++|+.. ..+.|+..|
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Ga-----d~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F 87 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGA-----DDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELF 87 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHc
Confidence 3455556787 589999999986655443 6799999999998 776532 246788889
Q ss_pred cHHHHHHHHHhhhhh
Q 003255 176 GDEVAKLVAGVSRLS 190 (836)
Q Consensus 176 G~eVA~LV~gVTKl~ 190 (836)
|++|+.+|..-..-+
T Consensus 88 ~~~V~~lV~~Hv~aK 102 (179)
T TIGR03276 88 SPSVTEPIRLHVQAK 102 (179)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999877543
No 25
>PRK06437 hypothetical protein; Provisional
Probab=97.60 E-value=0.00013 Score=63.08 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=45.1
Q ss_pred cCCC---CeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003255 785 WPNG---EIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 785 tP~G---~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
+=+| +-+++|.|.|..|+.-.+|+..+. +.|||++||.++.|++||.|||++
T Consensus 6 ~v~g~~~~~~~i~~~~tv~dLL~~Lgi~~~~vaV~vNg~iv~~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 6 RVKGHINKTIEIDHELTVNDIIKDLGLDEEEYVVIVNGSPVLEDHNVKKEDDVLILE 62 (67)
T ss_pred EecCCcceEEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCceEcCCCCEEEEEe
Confidence 3356 669999999999999999975543 589999999999999999999974
No 26
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=97.59 E-value=0.00015 Score=61.49 Aligned_cols=52 Identities=31% Similarity=0.397 Sum_probs=45.3
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce-EEECCEEeCC----CccCCCCCEEEEeC
Q 003255 785 WPNGEIMRLRSGSTAADAAMKVGLEGKL-VLVNGQLVLP----NTELKDGDIVEVRV 836 (836)
Q Consensus 785 tP~G~v~~Lp~GsT~~DfAy~ihv~~~~-~~VNg~lvpl----~~~L~~GD~VeI~t 836 (836)
+=||+.+++|.|+|..|+.-++++.... +-|||++||- ++.|++||.|||++
T Consensus 4 ~vNg~~~~~~~~~tl~~ll~~l~~~~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~ 60 (65)
T PRK06944 4 QLNQQTLSLPDGATVADALAAYGARPPFAVAVNGDFVARTQHAARALAAGDRLDLVQ 60 (65)
T ss_pred EECCEEEECCCCCcHHHHHHhhCCCCCeEEEECCEEcCchhcccccCCCCCEEEEEe
Confidence 4489999999999999999988865444 5999999997 78999999999985
No 27
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=97.54 E-value=0.00015 Score=61.95 Aligned_cols=51 Identities=35% Similarity=0.539 Sum_probs=45.3
Q ss_pred CCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003255 786 PNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 836 (836)
Q Consensus 786 P~G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 836 (836)
=+|+.+++|.|.|..|+.-.+++.... +.|||++||.+ +.|++||.|+|++
T Consensus 4 iNg~~~~~~~~~tv~~ll~~l~~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~ 60 (65)
T cd00565 4 VNGEPREVEEGATLAELLEELGLDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVT 60 (65)
T ss_pred ECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 379999999999999999999865543 58999999999 9999999999974
No 28
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=97.54 E-value=0.00023 Score=57.45 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=45.6
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCCC--C--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003255 783 VCWPNGEIMRLRSGSTAADAAMKVGLE--G--KLVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 783 VftP~G~v~~Lp~GsT~~DfAy~ihv~--~--~~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
+-.|+|....+|.|+|+.|+++.++.. . -.++|||++++|+++|.+|+.||.+|
T Consensus 3 i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 3 ITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIIT 60 (61)
T ss_pred EEcCCCCEEEeCCCCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEe
Confidence 344779999999999999999998632 2 23599999999999999999999875
No 29
>PRK07440 hypothetical protein; Provisional
Probab=97.53 E-value=0.00019 Score=62.65 Aligned_cols=54 Identities=28% Similarity=0.437 Sum_probs=48.5
Q ss_pred EEcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003255 783 VCWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 836 (836)
Q Consensus 783 VftP~G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 836 (836)
-++=+|+.+++|.|.|..|+--.+++..+. +-+||.+|| .++.|++||.|||++
T Consensus 6 ~i~vNG~~~~~~~~~tl~~lL~~l~~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 6 TLQVNGETRTCSSGTSLPDLLQQLGFNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred EEEECCEEEEcCCCCCHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 456699999999999999999999976655 599999999 999999999999985
No 30
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=97.42 E-value=0.00029 Score=61.43 Aligned_cols=50 Identities=40% Similarity=0.579 Sum_probs=46.1
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003255 787 NGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 836 (836)
Q Consensus 787 ~G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 836 (836)
+|+-++++.+.|..|+--.+++.... +.|||.+|| .++.|++||.|||++
T Consensus 8 ng~~~e~~~~~tv~dLL~~l~~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 8 NGKEVEIAEGTTVADLLAQLGLNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred CCEEEEcCCCCcHHHHHHHhCCCCceEEEEECCEEccchhhhhccccCCCEEEEEE
Confidence 49999999999999999999977765 599999999 999999999999974
No 31
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=97.42 E-value=0.00034 Score=60.85 Aligned_cols=47 Identities=36% Similarity=0.501 Sum_probs=42.1
Q ss_pred eEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003255 790 IMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 790 v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
.+++|.|+|+.|+.-.+++...+ +.|||++|+.+|.|++||.|+|++
T Consensus 17 ~~~~~~~~tv~~ll~~l~~~~~~v~v~vNg~iv~~~~~l~~gD~Veii~ 65 (70)
T PRK08364 17 EIEWRKGMKVADILRAVGFNTESAIAKVNGKVALEDDPVKDGDYVEVIP 65 (70)
T ss_pred EEEcCCCCcHHHHHHHcCCCCccEEEEECCEECCCCcCcCCCCEEEEEc
Confidence 77889999999999999976554 599999999999999999999974
No 32
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=97.41 E-value=0.00027 Score=61.13 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=46.2
Q ss_pred cCCCCeEeCCCC-CCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003255 785 WPNGEIMRLRSG-STAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 836 (836)
Q Consensus 785 tP~G~v~~Lp~G-sT~~DfAy~ihv~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 836 (836)
+=||+-+++|.| +|..|+--.+++..+. +-|||.+||-+ +.|++||.|||++
T Consensus 4 ~vNG~~~~~~~~~~tv~~lL~~l~~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 4 KINGNQIEVPESVKTVAELLTHLELDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVT 62 (67)
T ss_pred EECCEEEEcCCCcccHHHHHHHcCCCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 348999999999 7999999999976654 59999999999 9999999999985
No 33
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=97.32 E-value=0.00051 Score=58.54 Aligned_cols=50 Identities=38% Similarity=0.555 Sum_probs=43.8
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003255 787 NGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 836 (836)
Q Consensus 787 ~G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 836 (836)
||+.+++|.|.|..|+.-.+++.... +-|||++|| .++.|++||.|||++
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l~~~~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~ 59 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESLGLDPRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVT 59 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCceecCCCCEEEEEE
Confidence 79999999999999999999866554 599999997 447999999999984
No 34
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=97.18 E-value=0.00089 Score=57.48 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=45.5
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeC----CCccCCCCCEEEEeC
Q 003255 785 WPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVL----PNTELKDGDIVEVRV 836 (836)
Q Consensus 785 tP~G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvp----l~~~L~~GD~VeI~t 836 (836)
+=||+.+++|.|.|..|+--.++....+ +-|||++|| -+|.|++||.|||++
T Consensus 4 ~vNg~~~~~~~~~tl~~ll~~l~~~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~ 61 (66)
T PRK08053 4 LFNDQPMQCAAGQTVHELLEQLNQLQPGAALAINQQIIPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_pred EECCeEEEcCCCCCHHHHHHHcCCCCCcEEEEECCEEeChHHcCccccCCCCEEEEEE
Confidence 4489999999999999999998866543 599999999 778999999999985
No 35
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=96.94 E-value=0.0007 Score=61.35 Aligned_cols=55 Identities=36% Similarity=0.512 Sum_probs=35.1
Q ss_pred eEEEEcCCCCe---EeCCCCCCHHHHHHHhC---------CCCceEEECCEEeCCCccCCCCCEEEEe
Q 003255 780 VVIVCWPNGEI---MRLRSGSTAADAAMKVG---------LEGKLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 780 ~v~VftP~G~v---~~Lp~GsT~~DfAy~ih---------v~~~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
++|. +|+... ++||.|+|+.|+.-+-| +....+=|=||.|++++.|++||+|||-
T Consensus 5 V~yA-~p~~q~~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~d~~L~~GDRVEIY 71 (84)
T PF03658_consen 5 VAYA-LPERQVILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKLDTVLRDGDRVEIY 71 (84)
T ss_dssp EEEE-ETTCEEEEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--TT-B--TT-EEEEE
T ss_pred EEEE-CCCeEEEEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCCCCcCCCCCEEEEe
Confidence 4444 565443 68999999999988876 2333467889999999999999999994
No 36
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=96.90 E-value=0.0019 Score=55.09 Aligned_cols=50 Identities=32% Similarity=0.437 Sum_probs=43.2
Q ss_pred CCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC----CccCCCCCEEEEeC
Q 003255 786 PNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP----NTELKDGDIVEVRV 836 (836)
Q Consensus 786 P~G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl----~~~L~~GD~VeI~t 836 (836)
=||+.+++ .++|..|+--.+++..+. +-|||++||- +++|++||.|||++
T Consensus 5 ~Ng~~~~~-~~~tl~~Ll~~l~~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 5 VNGETLQT-EATTLALLLAELDYEGNWLATAVNGELVHKEARAQFVLHEGDRIEILS 60 (65)
T ss_pred ECCeEEEc-CcCcHHHHHHHcCCCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEE
Confidence 38999999 468999999888877654 5999999998 99999999999974
No 37
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=96.86 E-value=0.002 Score=58.03 Aligned_cols=46 Identities=37% Similarity=0.478 Sum_probs=41.6
Q ss_pred eEeCCCCCCHHHHHHHhCCCCc---eEEECCEEeCCCccCCCCCEEEEe
Q 003255 790 IMRLRSGSTAADAAMKVGLEGK---LVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 790 v~~Lp~GsT~~DfAy~ihv~~~---~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
.+.++.|+|..|..=++||.+. .+.|||+.|+++|.|++||.|.|.
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPHTEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred EEecCCCCcHHHHHHHcCCChHHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 4688999999999999998874 479999999999999999999984
No 38
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=96.84 E-value=0.0007 Score=60.19 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=35.2
Q ss_pred ccCCCc-------eeeecCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003255 582 LKMGHP-------VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 629 (836)
Q Consensus 582 Lp~G~t-------v~~~vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~t 629 (836)
||.|+| ||+.+|++|+.|++ .. ||+ .|+++|.|++||+|+|+|
T Consensus 27 l~~GaTv~D~A~~IHtdi~~~f~~Ai~--~k-~~~--~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 27 LPKGSTARDLAYAIHTDIGDGFLHAID--AR-TGR--RVGEDYELKHRDVIKIVS 76 (76)
T ss_pred ECCCCCHHHHHHHHHHHHHhcceeeEE--ee-CCE--EeCCCcEecCCCEEEEeC
Confidence 456655 56779999998865 22 788 899999999999999986
No 39
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=96.62 E-value=0.00084 Score=59.59 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=37.5
Q ss_pred ccCCCceee-------ecCCceeEeEEE--EEccCCeeEEEecccccCCCCeEEEcC
Q 003255 582 LKMGHPVIR-------VEGSNLLAAVII--RVEKGGRELLVAVSFGLAASEVVADRR 629 (836)
Q Consensus 582 Lp~G~tv~~-------~vG~~~~gAkV~--~v~~ngr~~lVpl~~~L~~gd~Vei~t 629 (836)
||.|+||.+ .++.+|..|+|- ++..+|+ .|+++++|++||+|+|.+
T Consensus 21 L~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq--~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 21 LRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQ--RVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred ECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCe--ECCCCCEecCCCEEEEeC
Confidence 688988654 478999999863 3334788 799999999999999975
No 40
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=96.30 E-value=0.0098 Score=53.97 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=49.0
Q ss_pred eEEEEcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC----CccCCCCCEEEEeC
Q 003255 780 VVIVCWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP----NTELKDGDIVEVRV 836 (836)
Q Consensus 780 ~v~VftP~G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl----~~~L~~GD~VeI~t 836 (836)
...-++=||+.++++.|.|..|+--.+++..+. +-|||.+||- ++.|++||.|||++
T Consensus 17 ~~m~I~VNG~~~~~~~~~tl~~LL~~l~~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~ 79 (84)
T PRK06083 17 VLITISINDQSIQVDISSSLAQIIAQLSLPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQ 79 (84)
T ss_pred ceEEEEECCeEEEcCCCCcHHHHHHHcCCCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEE
Confidence 344566799999999999999999999987764 4999999995 68999999999985
No 41
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=96.24 E-value=0.0077 Score=51.69 Aligned_cols=53 Identities=26% Similarity=0.264 Sum_probs=45.0
Q ss_pred EcCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCC---CccCCCCCEEEEeC
Q 003255 784 CWPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLP---NTELKDGDIVEVRV 836 (836)
Q Consensus 784 ftP~G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl---~~~L~~GD~VeI~t 836 (836)
+|=||+-+++|.|.|..|+.-.+++..+. +-+||.+||- ++.|++||.|||++
T Consensus 3 i~vNG~~~~~~~~~tl~~ll~~l~~~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~ 60 (65)
T PRK05863 3 VVVNEEQVEVDEQTTVAALLDSLGFPEKGIAVAVDWSVLPRSDWATKLRDGARLEVVT 60 (65)
T ss_pred EEECCEEEEcCCCCcHHHHHHHcCCCCCcEEEEECCcCcChhHhhhhcCCCCEEEEEe
Confidence 34589999999999999999999976654 5999999884 45799999999985
No 42
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=96.08 E-value=0.011 Score=51.56 Aligned_cols=48 Identities=31% Similarity=0.378 Sum_probs=39.7
Q ss_pred CeEeCCCCCCHHHHHHHhCC--C-------C-ceEEECCEEeCCCccCCCCCEEEEeC
Q 003255 789 EIMRLRSGSTAADAAMKVGL--E-------G-KLVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 789 ~v~~Lp~GsT~~DfAy~ihv--~-------~-~~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
..+++|.|+|..|+.-.+.. + . ..+.|||++|+.+++|++||.|+|+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~p 75 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIP 75 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeC
Confidence 45688999999999888752 1 1 23799999999999999999999973
No 43
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=95.99 E-value=0.015 Score=51.71 Aligned_cols=49 Identities=24% Similarity=0.334 Sum_probs=40.6
Q ss_pred CCCeEeCCCCCCHHHHHHHhCC---------CCceEEECCEEeCCCccCCCCCEEEEe
Q 003255 787 NGEIMRLRSGSTAADAAMKVGL---------EGKLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 787 ~G~v~~Lp~GsT~~DfAy~ihv---------~~~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
+++.+++|.|+|..|..-.+.. ....+-|||+.++.+++|++||.|+|+
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~ 76 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAII 76 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEe
Confidence 3477899999999998887741 112368999999999999999999997
No 44
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=95.26 E-value=0.027 Score=48.75 Aligned_cols=47 Identities=36% Similarity=0.473 Sum_probs=41.0
Q ss_pred CeEeCCCCCCHHHHHHHhC--C------CCceEEECCEEeCC---CccCCCCCEEEEe
Q 003255 789 EIMRLRSGSTAADAAMKVG--L------EGKLVLVNGQLVLP---NTELKDGDIVEVR 835 (836)
Q Consensus 789 ~v~~Lp~GsT~~DfAy~ih--v------~~~~~~VNg~lvpl---~~~L~~GD~VeI~ 835 (836)
..+.+|.|+|..|+--++. . ..-.+.|||++++. +++|++||.|.|+
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~ 71 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAIL 71 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEE
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEE
Confidence 5678899999999999997 3 33447999999999 9999999999997
No 45
>PTZ00258 GTP-binding protein; Provisional
Probab=95.14 E-value=0.031 Score=63.79 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=43.3
Q ss_pred eEEEEcC---CCCeEeCCCCCCHHHHHHHhC--CCC--ceEEE-----------------CC--EEeCCCccCCCCCEEE
Q 003255 780 VVIVCWP---NGEIMRLRSGSTAADAAMKVG--LEG--KLVLV-----------------NG--QLVLPNTELKDGDIVE 833 (836)
Q Consensus 780 ~v~VftP---~G~v~~Lp~GsT~~DfAy~ih--v~~--~~~~V-----------------Ng--~lvpl~~~L~~GD~Ve 833 (836)
-+-+||- .-+-..+|+|||+.|+|..|| ++- ..|.| -| |++--+|.++|||||+
T Consensus 304 li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~ 383 (390)
T PTZ00258 304 LIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIF 383 (390)
T ss_pred CEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEE
Confidence 3446662 236789999999999999999 322 23455 26 8999999999999999
Q ss_pred Ee
Q 003255 834 VR 835 (836)
Q Consensus 834 I~ 835 (836)
++
T Consensus 384 f~ 385 (390)
T PTZ00258 384 FK 385 (390)
T ss_pred EE
Confidence 86
No 46
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=95.00 E-value=0.016 Score=64.34 Aligned_cols=45 Identities=42% Similarity=0.484 Sum_probs=38.9
Q ss_pred EeCCCCCCHHHHHHHhC-----------CCCceEEECCEEeCCCccCCCCCEEEEe
Q 003255 791 MRLRSGSTAADAAMKVG-----------LEGKLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 791 ~~Lp~GsT~~DfAy~ih-----------v~~~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
+-|++|||+.|++.+|| |=++-++-+||.|-++|.|.|||+|+|.
T Consensus 308 lIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~ 363 (365)
T COG1163 308 LILRRGSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIH 363 (365)
T ss_pred eEEeCCCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEe
Confidence 55789999999999999 2224468899999999999999999996
No 47
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.92 E-value=0.043 Score=50.77 Aligned_cols=54 Identities=33% Similarity=0.434 Sum_probs=41.5
Q ss_pred CCceEEEEcCCCCeEeCCCCCCHHHHHHHhCCCC-------c-e-EEECCEEeCCCccCCCCCEEEEe
Q 003255 777 PGEVVIVCWPNGEIMRLRSGSTAADAAMKVGLEG-------K-L-VLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 777 ~~~~v~VftP~G~v~~Lp~GsT~~DfAy~ihv~~-------~-~-~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
+++..|+++ +.|+.|+|+.|++..=|+-+ . + +=|=|+.|-++.+|++||+|||.
T Consensus 12 lPerq~l~~-----v~v~egatV~dAi~~Sgll~~~~~idl~~n~~GI~~k~~kl~~~l~dgDRVEIy 74 (99)
T COG2914 12 LPERQYLCR-----VQLQEGATVEDAILASGLLELFPDIDLHENKVGIYSKPVKLDDELHDGDRVEIY 74 (99)
T ss_pred cCCcceEEE-----EEeccCcCHHHHHHhcchhhccccCCccccceeEEccccCccccccCCCEEEEe
Confidence 344555543 78999999999999877221 1 1 46679999999999999999994
No 48
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=94.89 E-value=0.021 Score=46.77 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=38.3
Q ss_pred ccccccc---ccCCCceeeec-------CCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003255 575 LFQKYSS---LKMGHPVIRVE-------GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 629 (836)
Q Consensus 575 vftPkg~---Lp~G~tv~~~v-------G~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~t 629 (836)
+|.|.|. +|.|.|+.+++ ...++++.+ ||+ ++++++.|+.||.|++++
T Consensus 3 ~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~v-----ng~--~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 3 VFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKV-----NGK--LVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred EECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEE-----CCE--ECCCCCCCCCCCEEEEEC
Confidence 6888884 68888876642 235677777 999 999999999999999975
No 49
>PRK14707 hypothetical protein; Provisional
Probab=94.31 E-value=0.11 Score=68.12 Aligned_cols=109 Identities=21% Similarity=0.321 Sum_probs=85.2
Q ss_pred EEeecChhHHHHHHHh----cCCCC----CcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhc-CCCccccccccc
Q 003255 421 SSRLKSLYSIFSKMRR----KDVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDYI 491 (836)
Q Consensus 421 ~gR~K~~ySI~~Km~r----k~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~-~~pi~~r~kDYI 491 (836)
..|+|+..|+.+|+.. ++.++ ..|.|.+-.-||+++. .|+..+..+++.+... |+-+ +++++-
T Consensus 2308 e~RLKS~~SLkrKL~~~~~~~~~sleeAaa~VnDALRYTVVLpp~------~Fva~~r~Il~aL~~qGy~~v--kvkN~F 2379 (2710)
T PRK14707 2308 QHQLKSYSSLQEKLKQRVALKKQSLEEAAASVNDALRYSVVLEPQ------GFTAGLRAVLAALDDQGHARV--KLTNQF 2379 (2710)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHhhhheeEEEEcCch------hHHHHHHHHHHHHHHcCCeEE--EEeecc
Confidence 4699999999999973 45665 4699988777887753 4899999999988754 5543 577776
Q ss_pred cCCCCCCCcceEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhhccccC
Q 003255 492 VNPKPSGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETG 541 (836)
Q Consensus 492 a~PK~NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~~~ 541 (836)
. .+.++|..+++++..|+|..+|||.=|..=-..-+. -|=.||+..
T Consensus 2380 ~-~~~~~YkGINvtL~~pdG~~FEIQFHT~qSF~LK~r---~HdLYKQ~q 2425 (2710)
T PRK14707 2380 T-EYSPSFKAINLTLRSPEGALWEIQFHTPETFALKER---FHDLYKRTH 2425 (2710)
T ss_pred c-CCCCCccceEEEEEcCCCcEEEEEeccHHHHHHHHH---HHHHHHHHH
Confidence 3 346899999999999999999999999876555553 477999743
No 50
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=94.15 E-value=0.12 Score=45.81 Aligned_cols=47 Identities=28% Similarity=0.425 Sum_probs=38.4
Q ss_pred CeEeCCCC-CCHHHHHHHhC-----C---CCc-eEEECCEEeCCCccCCCCCEEEEe
Q 003255 789 EIMRLRSG-STAADAAMKVG-----L---EGK-LVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 789 ~v~~Lp~G-sT~~DfAy~ih-----v---~~~-~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
+.+++|.+ +|..|..-.+. + ... .+.|||++++.+++|++||.|.|+
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~ 74 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFI 74 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEe
Confidence 46788876 99999888874 1 122 379999999999999999999986
No 51
>PLN02908 threonyl-tRNA synthetase
Probab=93.66 E-value=0.35 Score=59.16 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=62.1
Q ss_pred CCccccchhhHHHHHHHHHHHHHhhhhhhHhhhhccCCCCCCCCCCCCCCceEEEEcCCCCeEeCCC-CCCHHHHHHHhC
Q 003255 729 PTSMEASINNKVRLLRTMLRWEEQLRSEASLRQSKLGGKANGNPDSVVPGEVVIVCWPNGEIMRLRS-GSTAADAAMKVG 807 (836)
Q Consensus 729 ~~~~~~~~~~k~~wlr~~lewq~e~~~~~~~~~~~~~~~f~~~~k~dl~~~~v~VftP~G~v~~Lp~-GsT~~DfAy~ih 807 (836)
-.+....+.+++..+.++-+=|.+. + .. .-.+.+-|--|+|.+...|. |+||.|.|..+.
T Consensus 19 ~~~~~~~~~~r~~~f~~~~~~~~~~-----~----------~~----~~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~ 79 (686)
T PLN02908 19 EEYLSAVIKKRIELFEKIQARQLAR-----L----------ES----AGGDPIKVTLPDGAVKDGKKWVTTPMDIAKEIS 79 (686)
T ss_pred cCCCchhHHHHHHHHHHHHHHHHHH-----h----------hh----ccCCceEEEeCCCceEeecCCCCCHHHHHHHhC
Confidence 3344556677777777773322211 1 11 12234666669999999994 599999999997
Q ss_pred CC--Cc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003255 808 LE--GK--LVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 808 v~--~~--~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
-+ .. .++|||+++.|+++|.....||++|
T Consensus 80 ~~~~~~~v~a~Vng~l~dL~~~l~~d~~le~l~ 112 (686)
T PLN02908 80 KGLANSALIAQVDGVLWDMTRPLEGDCKLKLFK 112 (686)
T ss_pred ccchhhcEEEEECCEEeecCccccCCCeeEEec
Confidence 32 33 3699999999999999888898875
No 52
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=92.96 E-value=0.18 Score=60.88 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=47.9
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhCCC--C--ceEEECCEEeCCCccCCCCCEEEEeC
Q 003255 781 VIVCWPNGEIMRLRSGSTAADAAMKVGLE--G--KLVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 781 v~VftP~G~v~~Lp~GsT~~DfAy~ihv~--~--~~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
+.|.-|+|.+..+|.|.|+.|.|..+.-+ . -.++|||++++|++++..+..||++|
T Consensus 6 i~i~~~~~~~~~~~~g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~ 65 (639)
T PRK12444 6 IEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIIT 65 (639)
T ss_pred eEEEeCCCCEEEecCCCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEec
Confidence 56777889999999999999999988632 2 23699999999999999999999875
No 53
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=91.79 E-value=0.63 Score=49.65 Aligned_cols=63 Identities=16% Similarity=0.097 Sum_probs=42.1
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCC----CCCCChhhHHHHhhhhcccc
Q 003255 93 VTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIP----SSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 93 ~~~y~~~~~~~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~----~~G~~D~dtIiAALLHDvVE 162 (836)
+.+..+.+.+.+++|.+++.+.... .-+.|.++|......+.. ..+.......+||||||+..
T Consensus 30 ~~~~~iPdt~l~~~a~~~~~~~l~~-------~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~ 96 (228)
T TIGR03401 30 VEDTPLPDTPLVKFAQEYAKARLPP-------ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGT 96 (228)
T ss_pred cCCCCCCChHHHHHHHHHHHhhCCH-------hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhcc
Confidence 3445567899999999999887542 447899998754333221 11233445568999999865
No 54
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=91.07 E-value=0.19 Score=39.92 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=32.8
Q ss_pred ccCCCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003255 582 LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 629 (836)
Q Consensus 582 Lp~G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~t 629 (836)
+|.|.|+.++ .....++++| ||+ +++|++.|..||.|++++
T Consensus 13 ~~~g~t~~~~~~~~~~~~~~~~~~~~v-----n~~--~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 13 LPKGATAMDFALKIHTDLGKGFIGALV-----NGQ--LVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred cCCCCCHHHHHHHHHHHHHhheEEEEE-----CCE--ECCCCcCcCCCCEEEEeC
Confidence 5777777664 2345678888 999 999999999999999875
No 55
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=90.83 E-value=0.12 Score=46.20 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=29.1
Q ss_pred CcchhhHHHHHHHHHHHcCCCCCC-ChhhHHHHhhhhccccccc
Q 003255 123 GDPYLTHCIHTGRILAMLIPSSGK-RAVDTVVAGILHDVVDDAC 165 (836)
Q Consensus 123 GePYI~Hpl~VA~ILA~l~~~~G~-~D~dtIiAALLHDvVEDT~ 165 (836)
+++.+.|.+.|+.+...+....+. ......+||||||+-....
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~~ 45 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGT 45 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCccC
Confidence 567889999998877544311111 1346789999999977543
No 56
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=90.65 E-value=1.1 Score=50.39 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=62.3
Q ss_pred hhhhhhHHHHHHHHHhcccc-ccccccCCC-CccCCCCceeeeceeccCCCCCCHHHHHHHHHHHHHhhcCCccccCcch
Q 003255 49 TSAITHVAVTAVAIASGACL-STKVDFLWP-KLEEQPGTFIVDGVDVTGYPIFNDEQVQKAIAFAKRAHHGQFRKTGDPY 126 (836)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~-~~~~df~~~-~~~~~~~~~~~~g~~~~~y~~~~~~~l~~A~~fA~~aH~GQ~RksGePY 126 (836)
-.+=||--|.|+||-|---. ..-++.-|+ +..-.|.. .|-.+. ..+...+++.+-.+.+. .+..
T Consensus 123 v~~qphsevaala~fld~~~~g~~~~~~~~~~~~v~P~~---~gk~v~-----~ip~~ee~l~Ll~k~~~------~e~l 188 (339)
T PRK12703 123 VTNQPISEVSALAIFLDRYFDGKELEKSFEGKINVVPME---RGKLVK-----IIPDEDQCLDLLKKYGA------SDLL 188 (339)
T ss_pred eCCCChHHHHHHHHHHHHhccchhhhhccCCcEEEeecc---cccccc-----CCCCHHHHHHHHHHcCC------ChHH
Confidence 34557888888888762211 011111111 22222221 222222 12234566666554433 2235
Q ss_pred hhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccC-------CHHHHHH-HhcHHHHHHHHHhh
Q 003255 127 LTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE-------SLGSIEE-EFGDEVAKLVAGVS 187 (836)
Q Consensus 127 I~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVEDT~~-------T~eeI~~-~FG~eVA~LV~gVT 187 (836)
+.|.+.|+.....+....+......++||||||+-..... ..+-+++ .|.++++.+|+.-.
T Consensus 189 ~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~ 257 (339)
T PRK12703 189 IRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENIDDRVVSIVERHI 257 (339)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 7999998876433322222233455678999999653321 1222332 25567777776544
No 57
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=89.91 E-value=0.64 Score=41.68 Aligned_cols=46 Identities=35% Similarity=0.461 Sum_probs=36.2
Q ss_pred CeEeCCCCCCHHHHHHHhC--CC---------------CceEEECCEEeCCCc--cCCCCCEEEEe
Q 003255 789 EIMRLRSGSTAADAAMKVG--LE---------------GKLVLVNGQLVLPNT--ELKDGDIVEVR 835 (836)
Q Consensus 789 ~v~~Lp~GsT~~DfAy~ih--v~---------------~~~~~VNg~lvpl~~--~L~~GD~VeI~ 835 (836)
..+++| |+|..|+.-++. .+ ...+.|||+.+..+. +|++||.|.|+
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~ 82 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIF 82 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEe
Confidence 345777 999999888873 11 133799999998887 99999999986
No 58
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=89.02 E-value=0.3 Score=44.19 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHcCCCCC--CChhhHHHHhhhhcccccc
Q 003255 127 LTHCIHTGRILAMLIPSSG--KRAVDTVVAGILHDVVDDA 164 (836)
Q Consensus 127 I~Hpl~VA~ILA~l~~~~G--~~D~dtIiAALLHDvVEDT 164 (836)
+.|.+.|+.+...+....+ ..-.-..+||||||+=.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 6799999988766543111 1112366999999996654
No 59
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=88.82 E-value=1.3 Score=39.55 Aligned_cols=41 Identities=27% Similarity=0.173 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHhC----------C-CCceEEECCEEeCCCccCCCCCEEEEe
Q 003255 795 SGSTAADAAMKVG----------L-EGKLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 795 ~GsT~~DfAy~ih----------v-~~~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
.|+|+.|+--.+- . +.-.+-||++++.++|+|++||.|.|+
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~ 75 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_pred CCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEe
Confidence 4789988766652 1 222369999999999999999999886
No 60
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=88.58 E-value=0.4 Score=40.17 Aligned_cols=27 Identities=41% Similarity=0.641 Sum_probs=23.7
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEE
Q 003255 808 LEGKLVLVNGQLV-LPNTELKDGDIVEV 834 (836)
Q Consensus 808 v~~~~~~VNg~lv-pl~~~L~~GD~VeI 834 (836)
+....++|||+.+ ..++.|+.||.|+|
T Consensus 31 i~~G~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 31 LQENEVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred HHcCCEEECCEEccCCCCCCCCCCEEEe
Confidence 4556689999999 88999999999987
No 61
>PRK09602 translation-associated GTPase; Reviewed
Probab=87.80 E-value=0.2 Score=57.40 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=36.6
Q ss_pred ccCCCc-------eeeecCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCC
Q 003255 582 LKMGHP-------VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 631 (836)
Q Consensus 582 Lp~G~t-------v~~~vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~ 631 (836)
||.|+| ||+.+|.+|+.|.. +. +++ .|+.+|.|+.||+|+|++++
T Consensus 345 l~~g~t~~d~A~~IH~d~~~~fi~A~~--~~-~~~--~~g~~~~l~dgDiv~i~~~~ 396 (396)
T PRK09602 345 LPKGSTARDLAYKIHTDIGEGFLYAID--AR-TKR--RIGEDYELKDGDVIKIVSTA 396 (396)
T ss_pred ECCCCCHHHHHHHHHHHHHhhceehhc--cc-CCc--ccCCCcEecCCCEEEEEeCC
Confidence 577766 57779999988875 22 577 89999999999999999864
No 62
>PRK01777 hypothetical protein; Validated
Probab=87.11 E-value=0.51 Score=43.95 Aligned_cols=46 Identities=22% Similarity=0.187 Sum_probs=31.7
Q ss_pred cccCCCceeee---cC--Cc-----eeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCC
Q 003255 581 SLKMGHPVIRV---EG--SN-----LLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 631 (836)
Q Consensus 581 ~Lp~G~tv~~~---vG--~~-----~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~ 631 (836)
++|.|.||.+. .| .. +.. .++.| ||+ .|.+++.|+.||.|||...-
T Consensus 22 ~vp~GtTv~dal~~sgi~~~~pei~~~~-~~vgI--~Gk--~v~~d~~L~dGDRVeIyrPL 77 (95)
T PRK01777 22 TLQEGATVEEAIRASGLLELRTDIDLAK-NKVGI--YSR--PAKLTDVLRDGDRVEIYRPL 77 (95)
T ss_pred EcCCCCcHHHHHHHcCCCccCccccccc-ceEEE--eCe--ECCCCCcCCCCCEEEEecCC
Confidence 47889887654 12 11 111 22344 799 89999999999999997764
No 63
>PRK14707 hypothetical protein; Provisional
Probab=86.93 E-value=1.6 Score=58.16 Aligned_cols=103 Identities=24% Similarity=0.326 Sum_probs=77.5
Q ss_pred cChhHHHHHHHhc---CCCC----CcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhc-CCCccccccccccCCCC
Q 003255 425 KSLYSIFSKMRRK---DVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDYIVNPKP 496 (836)
Q Consensus 425 K~~ySI~~Km~rk---~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~-~~pi~~r~kDYIa~PK~ 496 (836)
|+..||.+|+.+. |++. ..|.|.+-.=||.+. +.|+...+.+.+.+... |+.+ ++|++-..| .
T Consensus 2544 Ks~~Si~RKI~~~~~~~ls~eqAaarVrDalRYtviLp~------e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~-d 2614 (2710)
T PRK14707 2544 KSLASIKDKIRRHLRAGMTAEQATQSVGDALRYALELPS------EGFVAKVQAAQDALRRQGMTCV--NLQNYFTSG-D 2614 (2710)
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHhhhheeEEEEcCc------chHHHHHHHHHHHHHhcCCeEE--EeeccccCC-C
Confidence 9999999999864 4443 468897655566553 35888999999988754 6644 788888554 4
Q ss_pred CCCcceEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhhccc
Q 003255 497 SGYQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 539 (836)
Q Consensus 497 NGYqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~ 539 (836)
+.|..+-+++..++|..+|||.=|..=- ++..+ .|-.|+.
T Consensus 2615 ~tY~GvN~~~r~~~g~~FEIQFHT~~Sf-~~K~~--tH~lYek 2654 (2710)
T PRK14707 2615 GTYRGINASFTDAEGYAFEVQFHTAESF-NAKAQ--THLSYKR 2654 (2710)
T ss_pred CcccceeeeEEcCCCCeEEEEeccHHHH-HHHHH--hHHHHHh
Confidence 7899999999999999999999997543 34444 4778975
No 64
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=86.59 E-value=0.38 Score=38.36 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.0
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEE
Q 003255 808 LEGKLVLVNGQLVL-PNTELKDGDIV 832 (836)
Q Consensus 808 v~~~~~~VNg~lvp-l~~~L~~GD~V 832 (836)
+....++|||+.|. ++++++.||+|
T Consensus 23 I~~g~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 23 IKQGRVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp HHTTTEEETTEEESSTTSBESTTEEE
T ss_pred cCCCEEEECCEEEcCCCCCCCCcCCC
Confidence 44466899999999 99999999987
No 65
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=86.54 E-value=0.57 Score=53.29 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=38.1
Q ss_pred eEEEEcCCC---CeEeCCCCCCHHHHHHHhC--CCCce--EEE-------------C----CE--EeCCCccCCCCCEEE
Q 003255 780 VVIVCWPNG---EIMRLRSGSTAADAAMKVG--LEGKL--VLV-------------N----GQ--LVLPNTELKDGDIVE 833 (836)
Q Consensus 780 ~v~VftP~G---~v~~Lp~GsT~~DfAy~ih--v~~~~--~~V-------------N----g~--lvpl~~~L~~GD~Ve 833 (836)
-+.+||-.. +...+|+||||.|+|..|| ++-.. |-| + |+ +.-=+|.++|||||.
T Consensus 280 li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~ 359 (364)
T PRK09601 280 LITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMH 359 (364)
T ss_pred CEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEE
Confidence 344555322 5678999999999999999 32211 211 1 22 334599999999999
Q ss_pred Ee
Q 003255 834 VR 835 (836)
Q Consensus 834 I~ 835 (836)
|+
T Consensus 360 f~ 361 (364)
T PRK09601 360 FR 361 (364)
T ss_pred EE
Confidence 86
No 66
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=85.51 E-value=1.5 Score=40.52 Aligned_cols=41 Identities=29% Similarity=0.256 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHhC-----------C-C-----CceEEECCEEe----CCCccCCCCCEEEEe
Q 003255 795 SGSTAADAAMKVG-----------L-E-----GKLVLVNGQLV----LPNTELKDGDIVEVR 835 (836)
Q Consensus 795 ~GsT~~DfAy~ih-----------v-~-----~~~~~VNg~lv----pl~~~L~~GD~VeI~ 835 (836)
.|+|..|..-.+- . + ...+.|||+-+ -++|+|++||.|.|+
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~ 88 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFI 88 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEE
Confidence 6899999877761 1 1 13479999997 478999999999986
No 67
>PRK09169 hypothetical protein; Validated
Probab=85.15 E-value=2.6 Score=56.90 Aligned_cols=109 Identities=24% Similarity=0.326 Sum_probs=81.0
Q ss_pred EEEeecChhHHHHHHH----hcCCCC----CcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhc-CCCcccccccc
Q 003255 420 LSSRLKSLYSIFSKMR----RKDVGI----HKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRL-WIPIDGEFDDY 490 (836)
Q Consensus 420 I~gR~K~~ySI~~Km~----rk~~~~----~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~-~~pi~~r~kDY 490 (836)
...|+|+..|+.+|+. ++++++ ..|.|.+-.-|++++ ..|+..+..+++.+... |+.+ +++++
T Consensus 1916 le~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~------~~Fva~~r~iv~~L~~~G~~~V--kv~N~ 1987 (2316)
T PRK09169 1916 LAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPP------QTFVAGYRRILGALDEQGHTRT--RVTNH 1987 (2316)
T ss_pred hHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCC------ccHHHHHHHHHHHHHhCCCeEE--EEEee
Confidence 3579999999999998 456665 468997666566654 25899999999988754 5543 45654
Q ss_pred ccCCCCCCCcceEEEE-EcCCCcEEEEEEechhhHHHHHhhhhhhhhcccc
Q 003255 491 IVNPKPSGYQSLHTAV-QGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKET 540 (836)
Q Consensus 491 Ia~PK~NGYqSLHt~V-~~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~~ 540 (836)
-..+ .++|..+|+++ ..++|..+|||.=|..=-..-+. -|-.||+.
T Consensus 1988 F~~~-~~~YkGVNv~l~~s~~g~~fEIQFHT~qSF~lK~r---~H~lYkq~ 2034 (2316)
T PRK09169 1988 FKKR-GPAFKGINVTLDATGEGVRLEIQFHTPQTFDLKER---FHDLYKQA 2034 (2316)
T ss_pred eccC-CCCccceEEeeecCCCCceEEEEecCHHHHHHHHH---hHHHHHHH
Confidence 4332 49999999999 77899999999999865554443 37799964
No 68
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=84.52 E-value=0.93 Score=38.55 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=30.8
Q ss_pred cccCCCceeee---cC--CceeEeEEEEEccCCeeEEEe----cccccCCCCeEEEcCC
Q 003255 581 SLKMGHPVIRV---EG--SNLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRP 630 (836)
Q Consensus 581 ~Lp~G~tv~~~---vG--~~~~gAkV~~v~~ngr~~lVp----l~~~L~~gd~Vei~ts 630 (836)
++|.|.|+.+. .| ...+...| ||. +|| .++.|+.||.|||++.
T Consensus 11 ~~~~~~tl~~lL~~l~~~~~~vav~v-----Ng~--iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 11 ELPDGESVAALLAREGLAGRRVAVEV-----NGE--IVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred EcCCCCCHHHHHHhcCCCCCeEEEEE-----CCe--EeCHHHcCcccCCCCCEEEEEEE
Confidence 35677776644 23 33444445 898 899 9999999999999763
No 69
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=83.97 E-value=3.2 Score=35.45 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=45.2
Q ss_pred CCCeEeCCCCCCHHHHHHHhCCCCceEEECCEEeCCCccCCCCCEEEEe
Q 003255 787 NGEIMRLRSGSTAADAAMKVGLEGKLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 787 ~G~v~~Lp~GsT~~DfAy~ihv~~~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
+|+-+....|+|.-++.-.+.-+.-.+-+||-..--|.+|+.||.|-.+
T Consensus 6 N~k~~~~~~~~tl~~lr~~~k~~~DI~I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKESKPDADIVILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhhCCCCCEEEEcCcccCCccccCCCCEEEEE
Confidence 7889999999999999999988888899999999999999999998765
No 70
>smart00363 S4 S4 RNA-binding domain.
Probab=81.97 E-value=1.2 Score=35.18 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=22.4
Q ss_pred CceEEECCEEe-CCCccCCCCCEEEE
Q 003255 810 GKLVLVNGQLV-LPNTELKDGDIVEV 834 (836)
Q Consensus 810 ~~~~~VNg~lv-pl~~~L~~GD~VeI 834 (836)
+..++|||+.+ ..++.|+.||+|++
T Consensus 25 ~g~i~vng~~~~~~~~~l~~gd~i~~ 50 (60)
T smart00363 25 QGRVKVNGKKVTKPSYIVKPGDVISV 50 (60)
T ss_pred cCCEEECCEEecCCCeEeCCCCEEEE
Confidence 45689999999 99999999999987
No 71
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=81.26 E-value=1.3 Score=35.26 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=32.6
Q ss_pred ccCCCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003255 582 LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 629 (836)
Q Consensus 582 Lp~G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~t 629 (836)
+|.|.++.++ .+...++|+| ||+ +++|++.+..|+.|+.++
T Consensus 13 ~~~~~t~~~~~~~~~~~~~~~~v~~~v-----ng~--~~dL~~~l~~~~~ie~i~ 60 (61)
T cd01667 13 FPKGTTPLDIAKSISPGLAKKAVAAKV-----NGE--LVDLSRPLEEDCELEIIT 60 (61)
T ss_pred eCCCCCHHHHHHHHHHHHHhheEEEEE-----CCE--EecCCcCcCCCCEEEEEe
Confidence 5667665553 3456788998 999 999999999999999875
No 72
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=80.46 E-value=1.2 Score=53.62 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=39.6
Q ss_pred ccCCCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003255 582 LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 633 (836)
Q Consensus 582 Lp~G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~~p 633 (836)
+|.|.|++++ .++.+++|+| ||+ +++|++.+.+++.||+++..++
T Consensus 14 ~~~gtt~~dia~~~~~~~~~~~v~a~v-----ng~--l~dL~~~l~~d~~Vefi~~~~~ 65 (638)
T PRK00413 14 FEAGVTVADVAASISPGLAKAAVAGKV-----NGE--LVDLSTPIEEDASLEIITAKDE 65 (638)
T ss_pred eCCCCCHHHHHHHhhhhchhheEEEEE-----CCE--EeeCCccccCCCceeeeeccch
Confidence 6889887765 5789999999 999 9999999999999999987654
No 73
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=79.94 E-value=1.6 Score=38.36 Aligned_cols=41 Identities=20% Similarity=0.262 Sum_probs=29.5
Q ss_pred ccCCCceeee---cCC--ceeEeEEEEEccCCeeEEEe----cccccCCCCeEEEcC
Q 003255 582 LKMGHPVIRV---EGS--NLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRR 629 (836)
Q Consensus 582 Lp~G~tv~~~---vG~--~~~gAkV~~v~~ngr~~lVp----l~~~L~~gd~Vei~t 629 (836)
++.+.|+.+. .|- +-+...| ||. +|| .++.|++||.|||++
T Consensus 14 ~~~~~tv~dLL~~l~~~~~~vav~v-----Ng~--iVpr~~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 14 IAEGTTVADLLAQLGLNPEGVAVAV-----NGE--IVPRSQWADTILKEGDRIEVVR 63 (68)
T ss_pred cCCCCcHHHHHHHhCCCCceEEEEE-----CCE--EccchhhhhccccCCCEEEEEE
Confidence 4555565543 333 3444444 999 999 999999999999976
No 74
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=78.09 E-value=2.4 Score=45.09 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=31.4
Q ss_pred cCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccC
Q 003255 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACE 166 (836)
Q Consensus 122 sGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVEDT~~ 166 (836)
+|..-+.|+++|+.+...+....|.+-.-+..||||||+..-...
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~~ 77 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAIDH 77 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcccccc
Confidence 677889999999976544433334433355689999999875544
No 75
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=78.04 E-value=2.2 Score=40.18 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.3
Q ss_pred CceEEECCEEeCCCccCCCCCEEEEe
Q 003255 810 GKLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 810 ~~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
..-|+|||+.+-+++.++.||+++|.
T Consensus 33 ~GrV~vNG~~aKpS~~VK~GD~l~i~ 58 (100)
T COG1188 33 GGRVKVNGQRAKPSKEVKVGDILTIR 58 (100)
T ss_pred CCeEEECCEEcccccccCCCCEEEEE
Confidence 34479999999999999999999985
No 76
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=77.29 E-value=2 Score=36.65 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=20.1
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003255 607 GGRELLVAVS----FGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~----~~L~~gd~Vei~ts 630 (836)
||+ +||-+ +.|+.||.|+|++.
T Consensus 36 Ng~--~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 36 NGE--IVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCE--EcCHHHcCceecCCCCEEEEEEe
Confidence 899 99999 99999999999753
No 77
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=77.11 E-value=1.2 Score=40.67 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=12.0
Q ss_pred CeeEEEecccccCCCCeEEEcCC
Q 003255 608 GRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 608 gr~~lVpl~~~L~~gd~Vei~ts 630 (836)
|| .|++++.|+.||.|||.+.
T Consensus 53 Gk--~~~~d~~L~~GDRVEIYRP 73 (84)
T PF03658_consen 53 GK--LVKLDTVLRDGDRVEIYRP 73 (84)
T ss_dssp E---S--TT-B--TT-EEEEE-S
T ss_pred ee--EcCCCCcCCCCCEEEEecc
Confidence 78 8999999999999999766
No 78
>PRK07440 hypothetical protein; Provisional
Probab=76.86 E-value=2.5 Score=37.07 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=30.5
Q ss_pred cccCCCceeee---cCC--ceeEeEEEEEccCCeeEEEe----cccccCCCCeEEEcCC
Q 003255 581 SLKMGHPVIRV---EGS--NLLAAVIIRVEKGGRELLVA----VSFGLAASEVVADRRP 630 (836)
Q Consensus 581 ~Lp~G~tv~~~---vG~--~~~gAkV~~v~~ngr~~lVp----l~~~L~~gd~Vei~ts 630 (836)
.++.|.|+.++ .|. +-+...+ ||. +|| -++.|+.||.|||++.
T Consensus 15 ~~~~~~tl~~lL~~l~~~~~~vav~~-----N~~--iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 15 TCSSGTSLPDLLQQLGFNPRLVAVEY-----NGE--ILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred EcCCCCCHHHHHHHcCCCCCeEEEEE-----CCE--EeCHHHcCceecCCCCEEEEEEE
Confidence 35667776654 233 2334444 899 999 9999999999999864
No 79
>PRK06437 hypothetical protein; Provisional
Probab=74.08 E-value=2.2 Score=37.05 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=29.4
Q ss_pred ccCCCceeee---cCCc--eeEeEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003255 582 LKMGHPVIRV---EGSN--LLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 582 Lp~G~tv~~~---vG~~--~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
++.|.|+-+. .|-. -++..| ||+ +||.++.|+.||.|+|++.
T Consensus 17 i~~~~tv~dLL~~Lgi~~~~vaV~v-----Ng~--iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 17 IDHELTVNDIIKDLGLDEEEYVVIV-----NGS--PVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred cCCCCcHHHHHHHcCCCCccEEEEE-----CCE--ECCCceEcCCCCEEEEEec
Confidence 5667665533 3332 223334 899 9999999999999999753
No 80
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=71.45 E-value=3.3 Score=36.98 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=32.5
Q ss_pred ccCCCc-------eeeecCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcC
Q 003255 582 LKMGHP-------VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRR 629 (836)
Q Consensus 582 Lp~G~t-------v~~~vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~t 629 (836)
||.|.| ||+.+...-+.|.|.+ ++ .|..+|.|+.||+|.|.+
T Consensus 28 l~~g~tv~d~a~~IH~d~~~~F~~A~v~~----~~--~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 28 VKKGTTVGDVARKIHGDLEKGFIEAVGGR----RR--LEGKDVILGKNDILKFKT 76 (76)
T ss_pred EcCCCCHHHHHHHHhHHHHhccEEEEEcc----CE--EECCCEEecCCCEEEEEC
Confidence 456666 5666777788888822 35 799999999999999974
No 81
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=71.19 E-value=3.8 Score=33.26 Aligned_cols=26 Identities=46% Similarity=0.759 Sum_probs=22.6
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEE
Q 003255 809 EGKLVLVNGQLV-LPNTELKDGDIVEV 834 (836)
Q Consensus 809 ~~~~~~VNg~lv-pl~~~L~~GD~VeI 834 (836)
..+.++|||+.+ .+++.++.||+|.+
T Consensus 24 ~~g~V~vn~~~~~~~~~~v~~~d~i~i 50 (70)
T cd00165 24 KHGHVLVNGKVVTKPSYKVKPGDVIEV 50 (70)
T ss_pred HcCCEEECCEEccCCccCcCCCCEEEE
Confidence 345689999999 89999999999876
No 82
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=69.78 E-value=4.1 Score=36.84 Aligned_cols=23 Identities=43% Similarity=0.332 Sum_probs=21.1
Q ss_pred EEECCEEeCCCccCCCCCEEEEe
Q 003255 813 VLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 813 ~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
+.+|..+++++|+|++||.|-|+
T Consensus 56 ~~~~~~~~~~~t~L~dGDeVa~~ 78 (84)
T COG1977 56 AANNEFLVGLDTPLKDGDEVAFF 78 (84)
T ss_pred eeeceeeccccccCCCCCEEEEe
Confidence 57889999999999999999886
No 83
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=68.61 E-value=3.6 Score=34.65 Aligned_cols=24 Identities=46% Similarity=0.654 Sum_probs=20.1
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLP--NTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl--~~~L~~GD~VeI 834 (836)
.+++|||+.++. .++|++||++.|
T Consensus 42 ngt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 42 NGTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp S-EEETTEEESSTSEEEE-TTEEEEE
T ss_pred CcEEECCEEcCCCCEEECCCCCEEEc
Confidence 568999999999 899999999986
No 84
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=64.30 E-value=6.6 Score=33.72 Aligned_cols=22 Identities=0% Similarity=0.004 Sum_probs=19.1
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003255 607 GGRELLVA----VSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVp----l~~~L~~gd~Vei~ts 630 (836)
||+ +|| =++.|+.||.|||++.
T Consensus 37 N~~--iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 37 NQQ--IIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CCE--EeChHHcCccccCCCCEEEEEEE
Confidence 889 999 6678999999999864
No 85
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=62.86 E-value=7 Score=34.02 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=20.2
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003255 607 GGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
||+ +|+-++.|+.||.|++++.
T Consensus 45 Ng~--iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 45 NGK--VALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred CCE--ECCCCcCcCCCCEEEEEcc
Confidence 899 9999999999999999753
No 86
>PRK10119 putative hydrolase; Provisional
Probab=62.77 E-value=15 Score=39.44 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 102 EQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 102 ~~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
..+..+..|..+...+. .+|.. +.|..+|......+....|....-..+|||||||..
T Consensus 5 ~~~~~~~~~v~~~l~~~--~~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 5 HWQAQFENWLKNHHQHQ--DAAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHHhhcC--CCccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 45666777777765542 34444 567777654322221112233445669999999975
No 87
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=62.00 E-value=7.3 Score=33.78 Aligned_cols=22 Identities=0% Similarity=-0.080 Sum_probs=20.1
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003255 607 GGRELLVAVS----FGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~----~~L~~gd~Vei~ts 630 (836)
||. +||=+ +.|+.||.|||++.
T Consensus 38 N~~--iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 38 NKD--ILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CCE--EeCHHHcCceecCCCCEEEEEEE
Confidence 899 99999 99999999999863
No 88
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=59.62 E-value=8.1 Score=32.63 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=23.3
Q ss_pred chhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 125 PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 125 PYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
+-..|.+.|+.....+....|........||||||+=.
T Consensus 4 ~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 4 NVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 44678888876654443222322234668999999744
No 89
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=58.51 E-value=3.4 Score=47.12 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=34.6
Q ss_pred CeEeCCCCCCHHHHHHHhCCCCc-eEEECCEE--eCCCccCCCCCEEEE
Q 003255 789 EIMRLRSGSTAADAAMKVGLEGK-LVLVNGQL--VLPNTELKDGDIVEV 834 (836)
Q Consensus 789 ~v~~Lp~GsT~~DfAy~ihv~~~-~~~VNg~l--vpl~~~L~~GD~VeI 834 (836)
|....+.|||++|++|.||-+.- .++-.|+. +-=+|.+++||++..
T Consensus 320 Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~F 368 (372)
T COG0012 320 DFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHF 368 (372)
T ss_pred chhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEE
Confidence 56778899999999999996652 23333333 566999999999954
No 90
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=56.17 E-value=11 Score=31.99 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.7
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003255 607 GGRELLVAV----SFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl----~~~L~~gd~Vei~ts 630 (836)
||+ +||- ++.|+.||.|||++.
T Consensus 36 N~~--iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 36 NGE--LVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CCE--EcCHHHcCccccCCCCEEEEEEe
Confidence 889 9998 889999999999864
No 91
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=55.98 E-value=9.9 Score=39.97 Aligned_cols=27 Identities=44% Similarity=0.704 Sum_probs=23.4
Q ss_pred CCceEEECCEEeC-CCccCCCCCEEEEe
Q 003255 809 EGKLVLVNGQLVL-PNTELKDGDIVEVR 835 (836)
Q Consensus 809 ~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 835 (836)
.+..++|||+.|. +++.|+.||+|+|.
T Consensus 116 ~~G~V~VNgk~v~~ps~~v~~GD~I~v~ 143 (203)
T PRK05327 116 SHGHILVNGKKVNIPSYRVKPGDVIEVR 143 (203)
T ss_pred HCCcEEECCEEECCCCcCCCCCCEEEEC
Confidence 3445899999997 89999999999985
No 92
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=54.61 E-value=5.5 Score=35.98 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=26.4
Q ss_pred chhhHHHHHHHHHHHcCCCC---CCChhhHHHHhhhhcccccc
Q 003255 125 PYLTHCIHTGRILAMLIPSS---GKRAVDTVVAGILHDVVDDA 164 (836)
Q Consensus 125 PYI~Hpl~VA~ILA~l~~~~---G~~D~dtIiAALLHDvVEDT 164 (836)
+...|.+.|+.+...+.... +.......+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 45789999888775543210 11134577999999998854
No 93
>PRK03826 5'-nucleotidase; Provisional
Probab=54.61 E-value=26 Score=36.72 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=24.9
Q ss_pred cchhhHHHHHHHHH---HHcC---CCCCCChhhHHHHhhhhccccc
Q 003255 124 DPYLTHCIHTGRIL---AMLI---PSSGKRAVDTVVAGILHDVVDD 163 (836)
Q Consensus 124 ePYI~Hpl~VA~IL---A~l~---~~~G~~D~dtIiAALLHDvVED 163 (836)
|.--.|...||.+. +.+. ...+..-..++..||+||+.|-
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~ 72 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEV 72 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHH
Confidence 45678999988663 2211 1111223356779999999984
No 94
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=54.34 E-value=8.4 Score=38.39 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=24.6
Q ss_pred cchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 124 ePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
+.-+.|.+.||.+...+....|......-+||||||+=.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 344789999886543222111223456779999999865
No 95
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=53.67 E-value=13 Score=31.57 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=18.0
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003255 607 GGRELLVA----VSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVp----l~~~L~~gd~Vei~ts 630 (836)
||+ +|| -++.|+.||.|||++.
T Consensus 35 N~~--iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 35 NGE--IVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCE--EcCHHHcCceecCCCCEEEEEEe
Confidence 889 886 3468999999999863
No 96
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=51.60 E-value=12 Score=45.44 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=25.0
Q ss_pred CCceEEECCEEeCCCccCCCCCEEEEeC
Q 003255 809 EGKLVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 809 ~~~~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
..-.++|||++++|++++.+|+.||++|
T Consensus 34 ~~v~a~vng~l~dL~~~l~~d~~Vefi~ 61 (638)
T PRK00413 34 AAVAGKVNGELVDLSTPIEEDASLEIIT 61 (638)
T ss_pred heEEEEECCEEeeCCccccCCCceeeee
Confidence 3466899999999999999999999985
No 97
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=50.62 E-value=11 Score=34.57 Aligned_cols=46 Identities=28% Similarity=0.421 Sum_probs=26.8
Q ss_pred eEeCCCCCCHHHHHHHhC-------CCCce--------------EEECCE--EeCCCccCCCCCEEEEe
Q 003255 790 IMRLRSGSTAADAAMKVG-------LEGKL--------------VLVNGQ--LVLPNTELKDGDIVEVR 835 (836)
Q Consensus 790 v~~Lp~GsT~~DfAy~ih-------v~~~~--------------~~VNg~--lvpl~~~L~~GD~VeI~ 835 (836)
--.++.|+|+.++|-.|| |.... +|=.|+ +.-=+|.++|||||.++
T Consensus 14 aWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~f~ 82 (84)
T PF06071_consen 14 AWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIHFR 82 (84)
T ss_dssp EEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEEEE
T ss_pred EEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEEEE
Confidence 346899999999999998 11100 111333 44459999999999875
No 98
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=50.35 E-value=11 Score=39.42 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=29.4
Q ss_pred CcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccccc
Q 003255 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDAC 165 (836)
Q Consensus 123 GePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVEDT~ 165 (836)
.++-+.|+++||+...++..-.|.+...+=+||+|||..-+-+
T Consensus 15 ~~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 15 SEKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 3445899999987654443323334456779999999987654
No 99
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=49.10 E-value=35 Score=30.68 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=38.1
Q ss_pred eEEEEcCCCCeEeCCCCCCHHHHHHHhCCC-----------------Cc---e-EEECCEE-eC-CCccCCCCCEEEE
Q 003255 780 VVIVCWPNGEIMRLRSGSTAADAAMKVGLE-----------------GK---L-VLVNGQL-VL-PNTELKDGDIVEV 834 (836)
Q Consensus 780 ~v~VftP~G~v~~Lp~GsT~~DfAy~ihv~-----------------~~---~-~~VNg~l-vp-l~~~L~~GD~VeI 834 (836)
+.+-|+=+|+-++.++|.|.++++.+.|+. +. | |.|||+. |+ =.|++++|-.|+-
T Consensus 2 ~~v~i~idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~V~T 79 (82)
T PF13510_consen 2 KMVTITIDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMVVET 79 (82)
T ss_dssp EEEEEEETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEEEE-
T ss_pred CEEEEEECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcEEEE
Confidence 345678899999999999999999998611 11 2 7999987 53 3688999988864
No 100
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=48.57 E-value=16 Score=38.39 Aligned_cols=27 Identities=33% Similarity=0.726 Sum_probs=23.0
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEEe
Q 003255 809 EGKLVLVNGQLV-LPNTELKDGDIVEVR 835 (836)
Q Consensus 809 ~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 835 (836)
.+..+.|||+.| .+++.++.||+|+|.
T Consensus 113 ~~G~V~VNgk~v~~ps~~V~~GD~I~V~ 140 (200)
T TIGR01017 113 SHGHILVNGKKVDIPSYQVRPGDIISIK 140 (200)
T ss_pred HCCCEEECCEEeCCCCCCCCCCCEEEEe
Confidence 334589999999 689999999999985
No 101
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=47.34 E-value=15 Score=37.14 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=24.4
Q ss_pred cchhhHHHHHHHHH---HHcCCCCC--CChhhHHHHhhhhccccc
Q 003255 124 DPYLTHCIHTGRIL---AMLIPSSG--KRAVDTVVAGILHDVVDD 163 (836)
Q Consensus 124 ePYI~Hpl~VA~IL---A~l~~~~G--~~D~dtIiAALLHDvVED 163 (836)
+..+.|.+.|+.+. +......| ..-....+||||||+-..
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~ 56 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRA 56 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcc
Confidence 44578999988663 33221111 222456789999998653
No 102
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=46.13 E-value=17 Score=38.36 Aligned_cols=28 Identities=36% Similarity=0.648 Sum_probs=23.6
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003255 808 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 835 (836)
Q Consensus 808 v~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 835 (836)
+.+.-+.|||+.| -+++.++.||+|+|.
T Consensus 111 I~~G~V~VNGk~v~~ps~~Vk~GD~I~V~ 139 (201)
T CHL00113 111 VNHGHILVNGRIVDIPSYRCKPKDIITVK 139 (201)
T ss_pred HHCCcEEECCEEecCccccCCCCCEEEEc
Confidence 4445589999999 679999999999984
No 103
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=43.77 E-value=20 Score=30.26 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.0
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003255 607 GGRELLVAV----SFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl----~~~L~~gd~Vei~ts 630 (836)
||+ +||- ++.|+.||.|||++.
T Consensus 36 N~~--~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 36 NGD--FVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CCE--EcCchhcccccCCCCCEEEEEee
Confidence 889 8886 688999999999864
No 104
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=43.18 E-value=22 Score=38.81 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003255 808 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 835 (836)
Q Consensus 808 v~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 835 (836)
+....|+|||+.| -.++.++.||+|.|.
T Consensus 205 I~~G~V~VNg~~v~~~s~~v~~gD~Isvr 233 (257)
T TIGR03069 205 IKAGRLRLNWKTVTQPSRELKVGDRLQLR 233 (257)
T ss_pred HHCCeEEECCEEcCCCCCcCCCCCEEEEc
Confidence 4556689999999 799999999999985
No 105
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=42.48 E-value=26 Score=37.11 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=23.5
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEEEEe
Q 003255 808 LEGKLVLVNGQLVL-PNTELKDGDIVEVR 835 (836)
Q Consensus 808 v~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 835 (836)
|.+..+.|||+.|- ++|.++.||.|+|.
T Consensus 116 V~HGHI~VnGk~V~iPSy~V~~gdei~V~ 144 (205)
T COG0522 116 VSHGHILVNGKRVNIPSYLVSPGDEISVR 144 (205)
T ss_pred hhcceEEECCEEeccCcEEecCCCEEEee
Confidence 45556899999996 68999999999984
No 106
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=41.16 E-value=46 Score=34.32 Aligned_cols=35 Identities=34% Similarity=0.562 Sum_probs=25.4
Q ss_pred ccCcch--hhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcc
Q 003255 121 KTGDPY--LTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160 (836)
Q Consensus 121 ksGePY--I~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDv 160 (836)
.+|||. ..|.+..|. ||+-- | -+.+.|+||||||+
T Consensus 24 y~ge~VTq~eHaLQ~At-lAerd---G-a~~~lVaaALLHDi 60 (186)
T COG4341 24 YSGEPVTQLEHALQCAT-LAERD---G-ADTALVAAALLHDI 60 (186)
T ss_pred cccCcchhhhhHHHHhH-HHHhc---C-CcHHHHHHHHHHhH
Confidence 478874 579999875 44432 2 35789999999996
No 107
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=40.91 E-value=23 Score=38.94 Aligned_cols=28 Identities=39% Similarity=0.394 Sum_probs=23.8
Q ss_pred CCCceEEECCEEe-CCCccCCCCCEEEEe
Q 003255 808 LEGKLVLVNGQLV-LPNTELKDGDIVEVR 835 (836)
Q Consensus 808 v~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 835 (836)
+....|+|||+.+ ..++.++.||+|.|+
T Consensus 213 I~~g~V~vN~~~v~~~s~~v~~gD~isiR 241 (267)
T PLN00051 213 ISSGDVRVNWREVTKNGTTLKTGDVVSVS 241 (267)
T ss_pred HHcCcEEECCEEcCCCCCCCCCCCEEEEe
Confidence 4445689999997 799999999999987
No 108
>PRK11507 ribosome-associated protein; Provisional
Probab=40.88 E-value=28 Score=31.07 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.1
Q ss_pred CCCceEEECCEEeCC-CccCCCCCEEEE
Q 003255 808 LEGKLVLVNGQLVLP-NTELKDGDIVEV 834 (836)
Q Consensus 808 v~~~~~~VNg~lvpl-~~~L~~GD~VeI 834 (836)
+....|+|||....- ..+|++||+|++
T Consensus 34 I~eg~V~VNGeve~rRgkKl~~GD~V~~ 61 (70)
T PRK11507 34 IAEGQVKVDGAVETRKRCKIVAGQTVSF 61 (70)
T ss_pred HHcCceEECCEEecccCCCCCCCCEEEE
Confidence 445668999997654 358999999997
No 109
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=40.84 E-value=16 Score=41.12 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=25.8
Q ss_pred cchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 124 ePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
++...|.+.||.+...+....|..+.+.-+||||||+=.
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK 233 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITK 233 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhc
Confidence 455789999887643332211233467789999999865
No 110
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=40.02 E-value=15 Score=33.56 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=18.7
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003255 607 GGRELLVAV----SFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl----~~~L~~gd~Vei~ts 630 (836)
||. +||= ++.|+.||.|||++.
T Consensus 55 Ng~--iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 55 NNQ--VVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CCE--EeCHHHcCcccCCCCCEEEEEEE
Confidence 899 8884 578999999999864
No 111
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=39.20 E-value=29 Score=31.91 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=32.1
Q ss_pred CeEeCCCCCCHHHHHHHhC--CCC--c-----------------------eEEECCEEeCCCccCCCCCEEEEe
Q 003255 789 EIMRLRSGSTAADAAMKVG--LEG--K-----------------------LVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 789 ~v~~Lp~GsT~~DfAy~ih--v~~--~-----------------------~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
+--.++.|+|+-++|-.|| +.- . .++.-|+ +|.+++||++.++
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK----~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGK----DYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCC----ceEeeCCeEEEEE
Confidence 3457899999999999998 111 0 1244565 8999999999875
No 112
>PRK00106 hypothetical protein; Provisional
Probab=39.10 E-value=22 Score=42.80 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=27.2
Q ss_pred cCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003255 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (836)
Q Consensus 122 sGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVED 163 (836)
.|...+.|.++||.+...+....|......-.||||||+=.-
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 366778999999876432222123223567789999998554
No 113
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=37.18 E-value=24 Score=32.01 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.2
Q ss_pred CCeeEEEecccccCCCCeEEEcC
Q 003255 607 GGRELLVAVSFGLAASEVVADRR 629 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~t 629 (836)
||+ -|+++|.++.||.|++..
T Consensus 55 NG~--~v~~~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 55 NGR--PVDFDYRLKDGDRVAVYP 75 (81)
T ss_pred CCE--ECCCcccCCCCCEEEEEe
Confidence 799 899999999999999853
No 114
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=36.96 E-value=21 Score=36.14 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=24.7
Q ss_pred CcchhhHHHHHHHHH---HHcCCCCCCChhhHHHHhhhhccccc
Q 003255 123 GDPYLTHCIHTGRIL---AMLIPSSGKRAVDTVVAGILHDVVDD 163 (836)
Q Consensus 123 GePYI~Hpl~VA~IL---A~l~~~~G~~D~dtIiAALLHDvVED 163 (836)
.|.--.|...||.+. +..... .......+..||+||+.|-
T Consensus 20 ~EsVAeHS~~vA~~a~~la~~~~~-~~d~~k~~~~aL~HDl~E~ 62 (165)
T PF13023_consen 20 PESVAEHSWRVALIALLLAEEAGP-DLDIEKVVKMALFHDLPEA 62 (165)
T ss_dssp G-BHHHHHHHHHHHHHHHHHHHH--HC-HHHHHHHHHHTTTTHH
T ss_pred CccHHHHHHHHHHHHHHHhHHhcc-cCCHHHHHHHHhhccchhh
Confidence 355678998888663 333210 0123468889999999994
No 115
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=36.67 E-value=27 Score=30.24 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=20.1
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003255 607 GGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
||+ +|+.++.|+.||.|+|+..
T Consensus 55 Ng~--~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 55 NGE--YVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred CCe--EcCCCcccCCCCEEEEeCC
Confidence 899 8999999999999999754
No 116
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=35.98 E-value=37 Score=30.69 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=24.2
Q ss_pred CceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003255 594 SNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 594 ~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
..|+.+.+ |.. ++++++.|+.||.|.++..
T Consensus 51 ~~~v~~~~-----~~~--~~~~~t~L~dGDeVa~~PP 80 (84)
T COG1977 51 NIVVNAAN-----NEF--LVGLDTPLKDGDEVAFFPP 80 (84)
T ss_pred cceEEeee-----cee--eccccccCCCCCEEEEeCC
Confidence 46666665 556 9999999999999999753
No 117
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=35.49 E-value=98 Score=26.03 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=40.6
Q ss_pred eEEEEcCCCCe--EeCCCCCCHHHHHHHhC----CCC--ceEEECCEEeCC-----CccCCCCCEEEEe
Q 003255 780 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEG--KLVLVNGQLVLP-----NTELKDGDIVEVR 835 (836)
Q Consensus 780 ~v~VftP~G~v--~~Lp~GsT~~DfAy~ih----v~~--~~~~VNg~lvpl-----~~~L~~GD~VeI~ 835 (836)
.|+|=+++|+. ++++...|+.|+-.+|. +.. -....||++..- ++-+++|++|.++
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLV 70 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 37888998885 56678999999988884 332 124568887663 4568899998875
No 118
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=35.08 E-value=47 Score=35.51 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=52.8
Q ss_pred cchhhHHHHHHHHH---HHcCCCCC-CChhhH-HHHhhhhcccccccCCHHHHHHHhcHHHHHHHHHhhhhhhhhHHHHH
Q 003255 124 DPYLTHCIHTGRIL---AMLIPSSG-KRAVDT-VVAGILHDVVDDACESLGSIEEEFGDEVAKLVAGVSRLSYINQLLRR 198 (836)
Q Consensus 124 ePYI~Hpl~VA~IL---A~l~~~~G-~~D~dt-IiAALLHDvVEDT~~T~eeI~~~FG~eVA~LV~gVTKl~~i~~~~r~ 198 (836)
+.--.|...||.|. +.+....| ..|... ...||.||..|-...+.-.=-+.+.++...++..|.+...-..+..
T Consensus 28 ~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~FtGDI~TPVKy~tPelr~~~~~VE~~m~~~~i~~- 106 (215)
T PF12917_consen 28 HNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFTGDIKTPVKYATPELREMLAQVEEEMTENFIKK- 106 (215)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS----S-SSSS-HHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHh-
Confidence 34457888877653 33211122 234434 4789999999964221111113355555556555555322111100
Q ss_pred hhhhcccCCCcchhhhhHHHHHHHhhcCC-ccEEEehhhhHHHhhh
Q 003255 199 HRRINVNQGTLGHEEANDLRVMLLGMVDD-PRVVLIKLADRLHNMR 243 (836)
Q Consensus 199 ~rr~~~~~~~~~~~qaEnlRKmLLAma~D-~RVvLIKLADRLhNMR 243 (836)
....+-.+.+|.++.---+| .-..+||.||.++-+-
T Consensus 107 ---------~iP~e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal~ 143 (215)
T PF12917_consen 107 ---------EIPEEFQEAYRRRLKEGKDDTLEGQIVKAADKIDALY 143 (215)
T ss_dssp ---------HS-GGGHHHHHHHHS---SSSHHHHHHHHHHHHHHHH
T ss_pred ---------hCCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 01122334566665533222 5678999999998654
No 119
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=35.02 E-value=66 Score=40.23 Aligned_cols=56 Identities=29% Similarity=0.411 Sum_probs=45.0
Q ss_pred ceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCC--------------ce-EEECCEEeC-CCccCCCCCEEEE
Q 003255 779 EVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEG--------------KL-VLVNGQLVL-PNTELKDGDIVEV 834 (836)
Q Consensus 779 ~~v~VftP~G~v~~Lp~GsT~~DfAy~ih--v~~--------------~~-~~VNg~lvp-l~~~L~~GD~VeI 834 (836)
+..+..|=+|+-+..|.|+|.+++|-+-| |.+ .| |-|||++++ -.|++.+|..|..
T Consensus 3 ~~~i~vtidg~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t 76 (978)
T COG3383 3 EKMITVTIDGRSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRT 76 (978)
T ss_pred ceeEEEEECCeEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecCceeccccccccCCcEEec
Confidence 34467788999999999999999999976 222 12 699999987 4899999998854
No 120
>PRK12705 hypothetical protein; Provisional
Probab=34.56 E-value=31 Score=41.27 Aligned_cols=42 Identities=21% Similarity=0.395 Sum_probs=28.0
Q ss_pred cCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003255 122 TGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (836)
Q Consensus 122 sGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVED 163 (836)
.|...+.|.++||.+...+...-|........||||||+=.-
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK~ 361 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGKS 361 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCCc
Confidence 355568899999876543332223334566789999999663
No 121
>PRK12704 phosphodiesterase; Provisional
Probab=34.32 E-value=31 Score=41.37 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=25.5
Q ss_pred CcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 123 GePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
|...+.|+++||.+...+...-|........||||||+=.
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK 372 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGK 372 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCc
Confidence 4456789999886643222212333456678999999754
No 122
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=32.79 E-value=21 Score=41.60 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHcCCC--CCCCh-------hhHHHHhhhhcc
Q 003255 126 YLTHCIHTGRILAMLIPS--SGKRA-------VDTVVAGILHDV 160 (836)
Q Consensus 126 YI~Hpl~VA~ILA~l~~~--~G~~D-------~dtIiAALLHDv 160 (836)
-+.|++.|..+...+... ....+ ..+.+||||||+
T Consensus 52 RFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDI 95 (421)
T COG1078 52 RFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDI 95 (421)
T ss_pred ccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcc
Confidence 389999987765443321 00000 037899999997
No 123
>PRK11025 23S rRNA pseudouridylate synthase C; Provisional
Probab=32.41 E-value=34 Score=38.13 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.3
Q ss_pred CceEEECCEEeCCCccCCCCCEEEE
Q 003255 810 GKLVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 810 ~~~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
...++|||+.+..++.|+.||+|+|
T Consensus 44 ~G~V~VNg~~v~~~~~v~~GD~I~i 68 (317)
T PRK11025 44 KGEVRVNKKRIKPEYKLEAGDEVRI 68 (317)
T ss_pred cCCEEECCEEcCcccccCCCCEEEe
Confidence 4467999999999999999999987
No 124
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=30.97 E-value=35 Score=40.81 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=24.9
Q ss_pred CcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 123 GDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 123 GePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
|...+.|.++||.+...+....|........||||||+=.
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 3345789999987643222222333335667999999844
No 125
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=30.61 E-value=1.1e+02 Score=31.99 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=59.6
Q ss_pred HHHHHHHHhhcC--Cc-cccCcchhhHHHHHHHHH---HHcCCCCC--CChhhHHHHhhhhcccccc--cCC--HHHHHH
Q 003255 106 KAIAFAKRAHHG--QF-RKTGDPYLTHCIHTGRIL---AMLIPSSG--KRAVDTVVAGILHDVVDDA--CES--LGSIEE 173 (836)
Q Consensus 106 ~A~~fA~~aH~G--Q~-RksGePYI~Hpl~VA~IL---A~l~~~~G--~~D~dtIiAALLHDvVEDT--~~T--~eeI~~ 173 (836)
....+-...|.| +. +..++.-..|-+.||.+- +......| ......+..||+||..|-- +++ ......
T Consensus 11 ~~~~Lk~i~R~gw~~~g~~~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~ 90 (193)
T COG1896 11 LLSRLKDIPRTGWLLRGIWNPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARA 90 (193)
T ss_pred HHHHHHhhhccchhhcCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcc
Confidence 334444445543 22 235677788877776542 22211111 1234578899999999963 222 122223
Q ss_pred HhcHHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHHhh
Q 003255 174 EFGDEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNM 242 (836)
Q Consensus 174 ~FG~eVA~LV~gVTKl~~i~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNM 242 (836)
......-+..+.+.+.. + ....+=.+-+|.++- .++..+.+||.||.|..+
T Consensus 91 ~~~~~~~e~e~~~~~~~-~---------------~~p~e~~~~~~~~~~--~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 91 GLYKEEEEAEEAAIHLL-F---------------GLPEELLELFREYEK--RSSLEARIVKDADKLELL 141 (193)
T ss_pred hHHHHHHHHHHHHHHcc-c---------------CCcHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHH
Confidence 33333333333333211 0 001111233443322 356788899999999877
No 126
>COG2302 Uncharacterized conserved protein, contains S4-like domain [Function unknown]
Probab=30.23 E-value=40 Score=36.83 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=25.9
Q ss_pred CCCceEEECCEEeC-CCccCCCCCEEEEe
Q 003255 808 LEGKLVLVNGQLVL-PNTELKDGDIVEVR 835 (836)
Q Consensus 808 v~~~~~~VNg~lvp-l~~~L~~GD~VeI~ 835 (836)
|..+.|+||.+.|- .+++++-||.+.|+
T Consensus 202 Ie~g~VkVN~k~v~~~s~~v~~GDliSir 230 (257)
T COG2302 202 IEKGKVKVNWKVVDKASYEVQEGDLISIR 230 (257)
T ss_pred HHcCceEEeeEEeccccceeccCCEEEEe
Confidence 77778999999999 99999999999986
No 127
>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]
Probab=29.77 E-value=42 Score=37.15 Aligned_cols=25 Identities=44% Similarity=0.628 Sum_probs=22.8
Q ss_pred ceEEECCEEeCCCccCCCCCEEEEe
Q 003255 811 KLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 811 ~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
..++|||+.|-.++.|+.||+|++-
T Consensus 37 g~v~vNg~~v~~~~~l~~gd~i~~~ 61 (289)
T COG0564 37 GRVRVNGKKVKPSYKLKPGDVVRIP 61 (289)
T ss_pred CCEEECCEEccCCeeeCCCCEEEEe
Confidence 3789999999999999999999874
No 128
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=28.56 E-value=47 Score=28.48 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.1
Q ss_pred CCeeEEEec---ccccCCCCeEEEcCC
Q 003255 607 GGRELLVAV---SFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl---~~~L~~gd~Vei~ts 630 (836)
||+ +++- ++.|+.||.|+|+..
T Consensus 49 N~~--~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 49 NGE--IVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp TTE--EEGGGTTTSBEETTEEEEEEES
T ss_pred CCE--EcCCccCCcCcCCCCEEEEECC
Confidence 899 9999 999999999999754
No 129
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=27.84 E-value=60 Score=32.29 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=23.3
Q ss_pred CCceEEECCEEeCCCccCCCCCEEEEe
Q 003255 809 EGKLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 809 ~~~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
....|+|||+.+-+.++++.||.|.|.
T Consensus 32 ~~G~V~vnG~~~Kps~~V~~gd~l~v~ 58 (133)
T PRK10348 32 EGGKVHYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_pred HCCCEEECCEECCCCCccCCCCEEEEE
Confidence 334589999999999999999999874
No 130
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=27.79 E-value=54 Score=33.96 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=35.1
Q ss_pred CcchhhHHHHHHHH---HHHcCCCCCCChhhHHHHhhhhccccc-cc--------CCHHHHHHH-hcHHHHHHHHHh
Q 003255 123 GDPYLTHCIHTGRI---LAMLIPSSGKRAVDTVVAGILHDVVDD-AC--------ESLGSIEEE-FGDEVAKLVAGV 186 (836)
Q Consensus 123 GePYI~Hpl~VA~I---LA~l~~~~G~~D~dtIiAALLHDvVED-T~--------~T~eeI~~~-FG~eVA~LV~gV 186 (836)
.+..+-||++|+.. ||..- |.+.+.--.+|||||.=-+ |. .+.+-+++. -.++|++.|.+=
T Consensus 45 ~e~L~kHcla~eavMr~lARe~---gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H 118 (212)
T COG2316 45 SESLQKHCLAVEAVMRWLAREW---GEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGH 118 (212)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh---CccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHh
Confidence 45678999986654 44332 3333455689999997322 21 223334432 566777666553
No 131
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=27.24 E-value=66 Score=33.92 Aligned_cols=40 Identities=28% Similarity=0.290 Sum_probs=30.6
Q ss_pred EeCCCCCCHHHHHHHhC----------CCC------ce-EEECCEEe-CCCccCCC-CC
Q 003255 791 MRLRSGSTAADAAMKVG----------LEG------KL-VLVNGQLV-LPNTELKD-GD 830 (836)
Q Consensus 791 ~~Lp~GsT~~DfAy~ih----------v~~------~~-~~VNg~lv-pl~~~L~~-GD 830 (836)
++.+.|.|.+|+..+|+ .++ .| ++|||+.+ .-.|++++ |.
T Consensus 19 v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~ 77 (220)
T TIGR00384 19 VPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQ 77 (220)
T ss_pred EeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCC
Confidence 35669999999999875 111 22 69999988 58899988 87
No 132
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=27.16 E-value=48 Score=37.53 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=21.5
Q ss_pred CCHHHHHHHhCCCCceEEECCEEe
Q 003255 797 STAADAAMKVGLEGKLVLVNGQLV 820 (836)
Q Consensus 797 sT~~DfAy~ihv~~~~~~VNg~lv 820 (836)
+||-|.+.+|-+|..++.||--++
T Consensus 259 g~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 259 GTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred CCHHHHHHHHHcCCCEEEEcceec
Confidence 689999999999999999998776
No 133
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=26.21 E-value=47 Score=29.90 Aligned_cols=26 Identities=38% Similarity=0.608 Sum_probs=19.4
Q ss_pred CCceEEECCEEeCC-CccCCCCCEEEE
Q 003255 809 EGKLVLVNGQLVLP-NTELKDGDIVEV 834 (836)
Q Consensus 809 ~~~~~~VNg~lvpl-~~~L~~GD~VeI 834 (836)
....|+|||..-.= ..+|.+||+|+|
T Consensus 35 ~eg~V~vNGe~EtRRgkKlr~gd~V~i 61 (73)
T COG2501 35 AEGEVKVNGEVETRRGKKLRDGDVVEI 61 (73)
T ss_pred HCCeEEECCeeeeccCCEeecCCEEEE
Confidence 34568999985432 357999999997
No 134
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=25.65 E-value=55 Score=28.91 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.8
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003255 607 GGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
||+ .++.++.|+.||.|+++..
T Consensus 57 N~~--~v~~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 57 NEE--YTTESAALKDGDELAIIPP 78 (82)
T ss_pred CCE--EcCCCcCcCCCCEEEEeCC
Confidence 789 7999999999999999754
No 135
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=25.44 E-value=1.1e+02 Score=34.39 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=38.1
Q ss_pred cCCCCeEeC-CCCCCHHHHHHHhC--CCC-------------c-e-EEECCE--Ee-CCCccCCCCCEEEE
Q 003255 785 WPNGEIMRL-RSGSTAADAAMKVG--LEG-------------K-L-VLVNGQ--LV-LPNTELKDGDIVEV 834 (836)
Q Consensus 785 tP~G~v~~L-p~GsT~~DfAy~ih--v~~-------------~-~-~~VNg~--lv-pl~~~L~~GD~VeI 834 (836)
+=+|.-++. |.|.|.+|+|.+.| |.. + | |.|+|+ +| .=.|+.++|-.|.-
T Consensus 72 ~IDGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T 142 (297)
T PTZ00305 72 FVNKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIIT 142 (297)
T ss_pred EECCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEe
Confidence 349999999 99999999999987 222 2 2 689986 43 34788899988764
No 136
>KOG3148 consensus Glucosamine-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=24.45 E-value=39 Score=35.51 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=17.0
Q ss_pred EEEEcCCCC---eEeCCCCCCHHHHH
Q 003255 781 VIVCWPNGE---IMRLRSGSTAADAA 803 (836)
Q Consensus 781 v~VftP~G~---v~~Lp~GsT~~DfA 803 (836)
+.-|+|.|+ +..||.||||+-.=
T Consensus 24 i~~f~p~~dkyf~lglptgstplg~y 49 (273)
T KOG3148|consen 24 INQFTPGGDKYFVLGLPTGSTPLGMY 49 (273)
T ss_pred HhhcCCCCceEEEEecCCCCCchhHH
Confidence 334677775 57899999998753
No 137
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.17 E-value=80 Score=36.32 Aligned_cols=64 Identities=25% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCceEEEEcCCCCeEe--CCCCCCHHHHHHH-hC-CCCceEEE-----CCEE--eCCCccCCCCCEEEEe
Q 003255 768 ANGNPDSVVPGEVVIVCWPNGEIMR--LRSGSTAADAAMK-VG-LEGKLVLV-----NGQL--VLPNTELKDGDIVEVR 835 (836)
Q Consensus 768 f~~~~k~dl~~~~v~VftP~G~v~~--Lp~GsT~~DfAy~-ih-v~~~~~~V-----Ng~l--vpl~~~L~~GD~VeI~ 835 (836)
|++-+- ++..--+++=-.+|+||+ +|.||- |||| || +.-+-.+| ||++ +..+-.|+.||++-|.
T Consensus 132 F~~~Lp-~I~~tp~~iGLgkGEImEI~vp~gSi---faYrhi~sI~qk~~RIvl~YRN~klll~~~slvlqp~D~lLVv 206 (471)
T COG3400 132 FISRLP-NIPSTPREIGLGKGEIMEIDVPFGSI---FAYRHIGSIRQKEYRIVLLYRNDKLLLSTKSLVLQPRDILLVV 206 (471)
T ss_pred HHHhcC-CccccchhcccccceEEEEecCCCch---hhhhhhhhhhhheeEEEEEEECCEEEEeccceEecCCCEEEEe
No 138
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=24.14 E-value=49 Score=37.65 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhcCCccc--cCc---chhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccc
Q 003255 101 DEQVQKAIAFAKRAHHGQFRK--TGD---PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161 (836)
Q Consensus 101 ~~~l~~A~~fA~~aH~GQ~Rk--sGe---PYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvV 161 (836)
.++|-..-.|=+-.+.-|.-- .+. .-++|.++|+.+-..+...-+....-+-+|||+||+=
T Consensus 33 ~drii~s~~frRL~~ktQv~~~~~~dh~rtR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiG 98 (336)
T PRK01286 33 RDRIIHSKAFRRLKHKTQVFINPEGDHYRTRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLG 98 (336)
T ss_pred HHHHhCCHHHHhhhccceecccCCCcccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 345555555555556666532 222 3379999999865333211112223445799999973
No 139
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=24.05 E-value=75 Score=37.34 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=40.6
Q ss_pred CCCCCH--HHHHHHHHHHHHhhcCCcccc--Ccc---hhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccc
Q 003255 96 YPIFND--EQVQKAIAFAKRAHHGQFRKT--GDP---YLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVV 161 (836)
Q Consensus 96 y~~~~~--~~l~~A~~fA~~aH~GQ~Rks--GeP---YI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvV 161 (836)
..+|+. ++|--.-.|-+-.++.|.=.. |.- -++|.++||.|-..+...-|....-+.+|||+||+=
T Consensus 34 Rt~FqRDrdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~G 106 (428)
T PRK03007 34 RTDFARDRARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIG 106 (428)
T ss_pred CCchhhhHHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 345544 567666677777787785432 322 379999999875433221122233466899999973
No 140
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=23.74 E-value=41 Score=31.66 Aligned_cols=12 Identities=50% Similarity=0.888 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcC
Q 003255 278 AELEDLCFAVLQ 289 (836)
Q Consensus 278 ~ELEDLaF~~L~ 289 (836)
.||||+||+|-+
T Consensus 20 t~LED~CfkfNY 31 (109)
T PF04753_consen 20 TELEDFCFKFNY 31 (109)
T ss_pred chHHHHHHHhcc
Confidence 699999999755
No 141
>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional
Probab=23.53 E-value=64 Score=36.04 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=22.7
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEEe
Q 003255 809 EGKLVLVNGQLV-LPNTELKDGDIVEVR 835 (836)
Q Consensus 809 ~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 835 (836)
....++|||+.+ ..++.|+.||+|+|.
T Consensus 41 ~~G~V~VNg~~v~~~~~~v~~gD~I~v~ 68 (325)
T PRK11180 41 LDQRVLVNGKVINKPKEKVLGGEQVAID 68 (325)
T ss_pred HCCCEEECCEEccCCCcCcCCCCEEEEe
Confidence 344689999988 589999999999884
No 142
>PTZ00258 GTP-binding protein; Provisional
Probab=23.31 E-value=45 Score=38.62 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=38.1
Q ss_pred ccCCCc-------eeeecCCceeEeEEEEEc------------cCCeeEEEecccccCCCCeEEEcCC
Q 003255 582 LKMGHP-------VIRVEGSNLLAAVIIRVE------------KGGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 582 Lp~G~t-------v~~~vG~~~~gAkV~~v~------------~ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
+|.|+| ||+.++-.-+-|+|++-+ .-|+..++--+|.++.||+|++..+
T Consensus 320 i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~fn 387 (390)
T PTZ00258 320 IQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKFN 387 (390)
T ss_pred eCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEec
Confidence 677776 777777777788886543 3475558999999999999999754
No 143
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=23.29 E-value=42 Score=29.45 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=12.9
Q ss_pred eEEECCEEeCC-CccCCCCCEEEE
Q 003255 812 LVLVNGQLVLP-NTELKDGDIVEV 834 (836)
Q Consensus 812 ~~~VNg~lvpl-~~~L~~GD~VeI 834 (836)
.++|||....= ..+|++||+|++
T Consensus 34 ~V~VNGe~e~rrg~Kl~~GD~V~~ 57 (65)
T PF13275_consen 34 EVKVNGEVETRRGKKLRPGDVVEI 57 (65)
T ss_dssp HHEETTB----SS----SSEEEEE
T ss_pred ceEECCEEccccCCcCCCCCEEEE
Confidence 37999987653 568999999987
No 144
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=22.61 E-value=1.2e+02 Score=34.30 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=28.7
Q ss_pred eEeCCCCCCHHHHHHHhC--CC--------C------ce-EEECCEEeCC-CccCCC
Q 003255 790 IMRLRSGSTAADAAMKVG--LE--------G------KL-VLVNGQLVLP-NTELKD 828 (836)
Q Consensus 790 v~~Lp~GsT~~DfAy~ih--v~--------~------~~-~~VNg~lvpl-~~~L~~ 828 (836)
-+..+.|.|.+|++.+|+ +. + .| ++|||+.+.- .|.+.+
T Consensus 22 ~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~~ 78 (329)
T PRK12577 22 TLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVGS 78 (329)
T ss_pred EEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchhh
Confidence 356789999999999996 32 2 13 6999998763 666654
No 145
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=22.49 E-value=2.8e+02 Score=23.80 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=39.6
Q ss_pred eEEEEcCCCCeE--eCCCCCCHHHHHHHhC----C--CC-c-eEEECCEEeCC-----CccCCCCCEEEEe
Q 003255 780 VVIVCWPNGEIM--RLRSGSTAADAAMKVG----L--EG-K-LVLVNGQLVLP-----NTELKDGDIVEVR 835 (836)
Q Consensus 780 ~v~VftP~G~v~--~Lp~GsT~~DfAy~ih----v--~~-~-~~~VNg~lvpl-----~~~L~~GD~VeI~ 835 (836)
.|+|-|+.|+.+ +++...|+.|+=..|. + .. + ....||+...= ++.+++|+.|-++
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEE
Confidence 478899999875 5667789999877774 4 22 1 24668887653 3568999988764
No 146
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=22.03 E-value=90 Score=27.47 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=20.8
Q ss_pred eEEECCEEeC--CCccCCCCCEEEEe
Q 003255 812 LVLVNGQLVL--PNTELKDGDIVEVR 835 (836)
Q Consensus 812 ~~~VNg~lvp--l~~~L~~GD~VeI~ 835 (836)
++.|||+.++ -.++|++||++.|-
T Consensus 67 g~~vn~~~~~~~~~~~l~~gd~i~ig 92 (102)
T cd00060 67 GTFVNGQRVSPGEPVRLRDGDVIRLG 92 (102)
T ss_pred CeEECCEECCCCCcEECCCCCEEEEC
Confidence 5799999999 68899999999873
No 147
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=21.55 E-value=81 Score=26.06 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=20.0
Q ss_pred CCCCceEEEEcCCCCeEeCCCCCC
Q 003255 775 VVPGEVVIVCWPNGEIMRLRSGST 798 (836)
Q Consensus 775 dl~~~~v~VftP~G~v~~Lp~GsT 798 (836)
++..+.++|.||+|+.+.+|.-..
T Consensus 2 ei~~~~aiVlT~dGeF~~ik~~~~ 25 (56)
T PF12791_consen 2 EIKKKYAIVLTPDGEFIKIKRKPG 25 (56)
T ss_pred cCcCCEEEEEcCCCcEEEEeCCCC
Confidence 345778999999999999998665
No 148
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.11 E-value=1.3e+02 Score=28.51 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.6
Q ss_pred CeeEEEecccccCCCCeEEEcCCC
Q 003255 608 GRELLVAVSFGLAASEVVADRRPS 631 (836)
Q Consensus 608 gr~~lVpl~~~L~~gd~Vei~ts~ 631 (836)
|| .|.++.+|+.||.|||.+.-
T Consensus 56 ~k--~~kl~~~l~dgDRVEIyRPL 77 (99)
T COG2914 56 SK--PVKLDDELHDGDRVEIYRPL 77 (99)
T ss_pred cc--ccCccccccCCCEEEEeccc
Confidence 57 79999999999999998774
No 149
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=21.07 E-value=97 Score=27.25 Aligned_cols=21 Identities=19% Similarity=-0.032 Sum_probs=19.2
Q ss_pred CCeeEEEecccccCCCCeEEEcC
Q 003255 607 GGRELLVAVSFGLAASEVVADRR 629 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~t 629 (836)
||+ .++.++.|+.||.|+|+.
T Consensus 55 n~~--~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 55 NEE--YVTDDALLNEGDEVAFIP 75 (80)
T ss_pred CCE--EcCCCcCcCCCCEEEEeC
Confidence 789 899999999999999974
No 150
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=21.00 E-value=1e+02 Score=27.37 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=19.1
Q ss_pred CCeeEEEecccccCCCCeEEEcC
Q 003255 607 GGRELLVAVSFGLAASEVVADRR 629 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~t 629 (836)
|++ ++..++.|+.||.|.++.
T Consensus 56 N~~--~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 56 NQT--LVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CCE--EcCCCCCCCCCCEEEEeC
Confidence 788 899999999999999974
Done!