Query 003255
Match_columns 836
No_of_seqs 499 out of 2418
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 18:50:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003255.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003255hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 4E-99 1E-103 835.2 25.5 354 99-568 23-382 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 7.4E-43 2.5E-47 366.3 7.6 119 410-539 66-195 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 1.8E-37 6.2E-42 321.2 9.3 169 401-580 28-216 (226)
4 3nqw_A CG11900; stringent resp 100.0 2.6E-33 8.9E-38 280.8 10.7 166 100-287 5-176 (179)
5 3nr1_A HD domain-containing pr 100.0 3.5E-32 1.2E-36 272.4 12.2 147 100-268 3-157 (178)
6 3hvz_A Uncharacterized protein 99.8 7.6E-20 2.6E-24 160.3 5.6 62 775-836 2-67 (78)
7 2eki_A DRG 1, developmentally- 99.2 1E-11 3.6E-16 111.8 6.8 58 779-836 10-86 (93)
8 2kmm_A Guanosine-3',5'-BIS(dip 99.0 1.8E-10 6.1E-15 97.9 5.6 56 781-836 3-62 (73)
9 3hvz_A Uncharacterized protein 98.9 4.4E-10 1.5E-14 98.5 2.2 52 574-632 9-70 (78)
10 1wwt_A Threonyl-tRNA synthetas 98.8 8.2E-09 2.8E-13 91.2 6.4 59 778-836 9-72 (88)
11 1wxq_A GTP-binding protein; st 98.6 1.6E-08 5.6E-13 112.3 4.1 58 779-836 318-394 (397)
12 2l32_A Small archaeal modifier 97.7 2.7E-05 9.2E-10 67.4 4.4 48 788-836 12-61 (74)
13 2hj1_A Hypothetical protein; s 97.7 1.4E-05 4.7E-10 72.8 2.4 57 779-835 16-83 (97)
14 1rws_A Hypothetical protein PF 97.6 3.5E-05 1.2E-09 66.7 3.9 52 785-836 19-72 (77)
15 2eki_A DRG 1, developmentally- 97.6 2.2E-05 7.4E-10 70.9 2.1 57 575-633 14-90 (93)
16 2k5p_A THis protein, thiamine- 97.5 7.2E-05 2.5E-09 65.3 4.4 52 785-836 4-64 (78)
17 1f0z_A THis protein; ubiquitin 97.4 0.00011 3.8E-09 61.6 4.7 52 785-836 4-61 (66)
18 2kl0_A Putative thiamin biosyn 97.4 0.00012 4.2E-09 63.0 4.6 51 785-836 4-60 (73)
19 1tyg_B YJBS; alpha beta barrel 97.4 0.00017 5.9E-09 64.3 5.6 53 784-836 23-82 (87)
20 1ryj_A Unknown; beta/alpha pro 97.2 0.00034 1.2E-08 59.4 5.0 50 787-836 10-65 (70)
21 2kmm_A Guanosine-3',5'-BIS(dip 97.2 0.00014 4.8E-09 61.3 2.5 52 574-632 4-65 (73)
22 2cu3_A Unknown function protei 97.1 0.0004 1.4E-08 57.9 4.8 51 785-836 3-59 (64)
23 1wwt_A Threonyl-tRNA synthetas 96.8 0.00049 1.7E-08 60.5 2.8 53 574-633 13-76 (88)
24 2q5w_D Molybdopterin convertin 96.7 0.0012 4.1E-08 56.3 4.1 48 789-836 18-72 (77)
25 1vjk_A Molybdopterin convertin 96.3 0.0035 1.2E-07 56.4 4.5 47 789-835 29-92 (98)
26 3po0_A Small archaeal modifier 96.2 0.0049 1.7E-07 54.1 5.2 46 790-835 21-83 (89)
27 1tke_A Threonyl-tRNA synthetas 96.1 0.0017 5.9E-08 66.5 1.9 52 575-633 4-65 (224)
28 1fm0_D Molybdopterin convertin 95.8 0.012 4E-07 50.5 5.8 42 794-835 23-75 (81)
29 1wxq_A GTP-binding protein; st 95.6 0.0017 5.9E-08 72.1 -0.7 45 582-631 345-396 (397)
30 2g1e_A Hypothetical protein TA 95.0 0.03 1E-06 48.7 5.6 47 790-836 18-85 (90)
31 4a9a_A Ribosome-interacting GT 94.9 0.01 3.6E-07 65.6 2.7 44 793-836 320-375 (376)
32 3rpf_C Molybdopterin convertin 93.8 0.081 2.8E-06 44.9 5.4 45 790-835 15-68 (74)
33 2dby_A GTP-binding protein; GD 92.3 0.14 4.7E-06 56.4 5.9 56 780-835 284-365 (368)
34 3dwg_C 9.5 kDa culture filtrat 92.2 0.16 5.6E-06 44.6 5.2 42 794-835 23-87 (93)
35 2l52_A Methanosarcina acetivor 90.8 0.2 6.8E-06 45.0 4.2 44 791-835 23-93 (99)
36 1tke_A Threonyl-tRNA synthetas 90.0 0.17 5.7E-06 51.7 3.4 27 810-836 35-61 (224)
37 1jal_A YCHF protein; nucleotid 89.9 0.23 7.9E-06 54.7 4.7 57 779-835 278-360 (363)
38 3dto_A BH2835 protein; all alp 89.8 0.4 1.4E-05 49.3 6.0 60 100-162 3-62 (223)
39 3b57_A LIN1889 protein; Q92AN1 89.4 0.32 1.1E-05 48.9 4.9 61 101-164 4-64 (209)
40 1v8c_A MOAD related protein; r 87.8 0.58 2E-05 46.2 5.4 46 790-836 17-82 (168)
41 2pjq_A Uncharacterized protein 87.1 0.53 1.8E-05 48.3 4.9 63 97-162 5-67 (231)
42 2ohf_A Protein OLA1, GTP-bindi 85.6 0.48 1.7E-05 52.7 3.9 56 780-835 305-386 (396)
43 2qjl_A URM1, ubiquitin-related 85.4 0.73 2.5E-05 41.2 4.3 45 791-835 24-93 (99)
44 2hj1_A Hypothetical protein; s 82.9 0.34 1.2E-05 43.9 1.0 45 581-630 31-85 (97)
45 1ni3_A YCHF GTPase, YCHF GTP-b 82.3 0.83 2.8E-05 50.7 4.0 57 779-835 306-388 (392)
46 1rws_A Hypothetical protein PF 78.2 0.79 2.7E-05 39.2 1.6 22 607-630 52-73 (77)
47 2k6p_A Uncharacterized protein 78.1 1.3 4.4E-05 38.8 3.1 24 812-835 27-50 (92)
48 3djb_A Hydrolase, HD family; a 77.8 3.1 0.00011 42.6 6.2 59 101-162 4-62 (223)
49 2l32_A Small archaeal modifier 76.5 0.79 2.7E-05 39.3 1.1 42 581-630 16-62 (74)
50 1vj7_A Bifunctional RELA/SPOT; 73.9 0.66 2.3E-05 51.7 0.0 25 736-760 358-382 (393)
51 2paq_A 5'-deoxynucleotidase YF 73.8 2.7 9.3E-05 42.4 4.5 101 123-242 29-144 (201)
52 3gqs_A Adenylate cyclase-like 72.6 2.9 0.0001 37.5 4.0 24 811-834 69-92 (106)
53 1dm9_A Hypothetical 15.5 KD pr 70.8 2.3 7.8E-05 40.3 2.9 26 810-835 33-58 (133)
54 1ryj_A Unknown; beta/alpha pro 70.3 2.4 8.2E-05 35.6 2.6 22 607-630 45-66 (70)
55 1f0z_A THis protein; ubiquitin 70.2 2 6.9E-05 35.4 2.1 22 607-630 37-62 (66)
56 2qgs_A Protein Se1688; alpha-h 69.0 6 0.0002 40.2 5.8 60 101-163 4-64 (225)
57 3fm8_A Kinesin-like protein KI 68.5 2.9 9.9E-05 39.2 3.1 23 812-834 91-113 (124)
58 1tyg_B YJBS; alpha beta barrel 67.8 3.4 0.00012 36.6 3.2 21 607-629 58-82 (87)
59 2k9x_A Tburm1, uncharacterized 67.2 3.2 0.00011 38.2 3.0 24 812-835 69-96 (110)
60 2k5p_A THis protein, thiamine- 65.2 2.4 8.2E-05 36.7 1.6 22 607-630 40-65 (78)
61 2pq7_A Predicted HD superfamil 65.0 5.1 0.00018 40.2 4.3 55 103-160 14-68 (220)
62 2kl0_A Putative thiamin biosyn 64.1 4.3 0.00015 34.6 3.0 22 607-630 36-61 (73)
63 4ejq_A Kinesin-like protein KI 62.6 4.1 0.00014 39.3 3.0 23 812-834 111-133 (154)
64 2q5w_D Molybdopterin convertin 60.6 5.5 0.00019 33.3 3.0 22 607-630 52-73 (77)
65 2o08_A BH1327 protein; putativ 58.3 3.5 0.00012 40.5 1.6 38 125-162 18-55 (188)
66 3ccg_A HD superfamily hydrolas 58.0 3.6 0.00012 40.5 1.6 37 126-162 20-56 (190)
67 1wgk_A Riken cDNA 2900073H19 p 57.4 5.5 0.00019 36.9 2.7 24 812-835 75-102 (114)
68 2pie_A E3 ubiquitin-protein li 56.6 13 0.00043 35.0 5.1 24 811-834 75-100 (138)
69 1p9k_A ORF, hypothetical prote 55.9 4.3 0.00015 34.6 1.6 22 813-834 48-70 (79)
70 1c05_A Ribosomal protein S4 de 55.7 5.9 0.0002 38.6 2.8 25 811-835 76-101 (159)
71 2ogi_A Hypothetical protein SA 55.5 4.1 0.00014 40.4 1.6 37 126-162 27-63 (196)
72 2cu3_A Unknown function protei 54.9 10 0.00035 31.0 3.7 22 607-630 35-60 (64)
73 2vqe_D 30S ribosomal protein S 53.9 6.4 0.00022 40.1 2.8 25 811-835 124-149 (209)
74 4h87_A Kanadaptin; FHA domain 53.8 7.9 0.00027 36.3 3.2 24 811-834 94-119 (130)
75 1wln_A Afadin; beta sandwich, 53.7 5.4 0.00019 36.6 2.0 24 811-834 80-103 (120)
76 4egx_A Kinesin-like protein KI 53.6 7.2 0.00025 38.9 3.0 22 813-834 142-163 (184)
77 3po8_A RV0020C protein, putati 53.4 5.9 0.0002 35.0 2.2 23 811-834 65-87 (100)
78 2csw_A Ubiquitin ligase protei 50.6 12 0.00041 35.5 3.9 24 811-834 83-108 (145)
79 3kh1_A Predicted metal-depende 49.3 23 0.00078 35.8 5.9 63 101-163 7-80 (200)
80 3hx1_A SLR1951 protein; P74513 49.1 7.3 0.00025 36.5 2.1 23 811-834 82-104 (131)
81 2ibn_A Inositol oxygenase; red 48.2 14 0.00048 38.6 4.2 52 104-160 38-90 (250)
82 2jqj_A DNA damage response pro 46.8 8.5 0.00029 36.7 2.2 24 811-834 87-111 (151)
83 2gz4_A Hypothetical protein AT 46.4 17 0.00059 37.0 4.6 37 124-163 54-90 (207)
84 1fm0_D Molybdopterin convertin 46.1 14 0.00047 31.0 3.2 22 607-630 56-77 (81)
85 2xt9_B Putative signal transdu 45.7 9.6 0.00033 34.6 2.3 23 811-834 73-95 (115)
86 3gw7_A Uncharacterized protein 42.7 15 0.00052 37.9 3.6 37 127-163 27-63 (239)
87 3bbn_D Ribosomal protein S4; s 42.4 11 0.00038 38.2 2.4 27 809-835 112-139 (201)
88 1gxc_A CHK2, CDS1, serine/thre 42.4 11 0.00039 35.8 2.4 24 811-834 103-128 (149)
89 2cqz_A 177AA long hypothetical 42.1 12 0.0004 36.8 2.4 39 124-163 31-75 (177)
90 1vjk_A Molybdopterin convertin 41.9 16 0.00054 32.3 3.1 22 607-630 73-94 (98)
91 2dqb_A Deoxyguanosinetriphosph 40.8 11 0.00038 41.7 2.2 90 61-161 15-111 (376)
92 1lgp_A Cell cycle checkpoint p 40.6 9 0.00031 34.7 1.3 25 811-835 68-94 (116)
93 2kb3_A Oxoglutarate dehydrogen 40.5 11 0.00036 36.1 1.8 22 812-834 109-130 (143)
94 1g6g_A Protein kinase RAD53; b 40.1 14 0.00048 34.1 2.6 24 811-834 79-104 (127)
95 1r21_A Antigen KI-67; beta san 39.7 11 0.00038 34.8 1.8 24 811-834 75-98 (128)
96 4dmb_A HD domain-containing pr 39.5 32 0.0011 34.9 5.2 39 124-163 44-82 (204)
97 1uht_A Expressed protein; FHA 39.3 9.1 0.00031 34.8 1.1 24 811-834 76-101 (118)
98 3kt9_A Aprataxin; FHA domain, 38.6 14 0.00048 33.6 2.2 23 813-835 66-90 (102)
99 3po0_A Small archaeal modifier 38.4 22 0.00075 30.5 3.4 22 607-630 64-85 (89)
100 3els_A PRE-mRNA leakage protei 37.6 12 0.0004 36.4 1.6 24 811-834 117-142 (158)
101 1dmz_A Protein (protein kinase 37.5 10 0.00035 36.6 1.2 25 810-834 82-108 (158)
102 1mzk_A Kinase associated prote 37.1 13 0.00044 35.0 1.8 24 811-834 76-109 (139)
103 1g3g_A Protien kinase SPK1; FH 36.9 18 0.00062 35.1 2.8 24 811-834 107-132 (164)
104 3r8n_D 30S ribosomal protein S 34.6 5.1 0.00017 40.9 -1.5 26 810-835 119-145 (205)
105 3oun_A Putative uncharacterize 33.9 17 0.0006 35.4 2.2 23 811-834 127-149 (157)
106 1qu5_A Protein kinase SPK1; FH 33.9 12 0.00043 37.1 1.2 24 811-834 107-132 (182)
107 2kfu_A RV1827 PThr 22; FHA dom 32.7 17 0.00058 35.5 1.9 23 811-834 117-139 (162)
108 3elv_A PRE-mRNA leakage protei 32.2 17 0.00056 37.1 1.7 24 811-834 164-189 (205)
109 2hek_A Hypothetical protein; p 31.6 16 0.00055 40.2 1.7 39 125-163 50-89 (371)
110 2bps_A YUKD protein; ubiquitin 31.4 9.4 0.00032 33.5 -0.2 26 810-835 56-81 (81)
111 2g1e_A Hypothetical protein TA 29.0 29 0.001 29.5 2.6 22 607-630 61-86 (90)
112 3u7z_A Putative metal binding 29.0 43 0.0015 30.4 3.7 44 791-835 25-96 (101)
113 3tm8_A BD1817, uncharacterized 28.7 22 0.00075 38.1 2.1 40 122-161 162-206 (328)
114 2jpe_A Nuclear inhibitor of pr 28.6 31 0.0011 32.3 2.9 24 811-834 100-125 (140)
115 1rm6_C 4-hydroxybenzoyl-COA re 27.2 43 0.0015 32.5 3.7 41 781-821 4-59 (161)
116 1nyr_A Threonyl-tRNA synthetas 26.4 18 0.0006 42.4 0.9 46 581-633 15-67 (645)
117 1ndd_A NEDD8, protein (ubiquit 25.8 2E+02 0.0069 22.7 7.1 56 780-835 2-70 (76)
118 1v9f_A Ribosomal large subunit 25.5 15 0.0005 39.4 0.0 28 808-835 39-67 (325)
119 2ff4_A Probable regulatory pro 24.5 28 0.00096 37.9 2.0 18 390-407 223-240 (388)
120 1qf6_A THRRS, threonyl-tRNA sy 24.5 19 0.00066 42.2 0.7 45 582-633 14-65 (642)
121 3rpf_C Molybdopterin convertin 23.5 52 0.0018 27.4 3.0 22 607-630 48-70 (74)
122 1ynb_A Hypothetical protein AF 23.3 97 0.0033 30.6 5.4 55 106-163 9-79 (173)
123 3dwg_C 9.5 kDa culture filtrat 22.2 59 0.002 28.0 3.2 22 607-630 64-89 (93)
124 3a9j_A Ubiquitin; protein comp 22.1 2.5E+02 0.0087 22.1 7.0 56 780-835 2-70 (76)
125 3va4_A Mediator of DNA damage 21.9 34 0.0012 32.0 1.8 24 811-834 89-116 (132)
126 1nyr_A Threonyl-tRNA synthetas 20.5 42 0.0014 39.2 2.5 26 811-836 38-63 (645)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=4e-99 Score=835.24 Aligned_cols=354 Identities=38% Similarity=0.617 Sum_probs=286.1
Q ss_pred CCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhcHH
Q 003255 99 FNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFGDE 178 (836)
Q Consensus 99 ~~~~~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVEDT~~T~eeI~~~FG~e 178 (836)
.+.+.+.+|+.||.++|.||+|++|+|||.||++||.||+++++ |.++++||||||+||||++|.++|++.||++
T Consensus 23 ~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~-----D~~~i~AALLHDvvEDt~~t~e~I~~~FG~~ 97 (393)
T 1vj7_A 23 TDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHL-----DAVTVACGFLHDVVEDTDITLDNIEFDFGKD 97 (393)
T ss_dssp HHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTC-----CHHHHHHHHHTTHHHHSSCCHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcC-----CHHHHHHHHhhhHHhcCCCCHHHHHHHhCHH
Confidence 45678999999999999999999999999999999999999875 6899999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHHhhhhhcCCChHHHHHHHH
Q 003255 179 VAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAKARAVAQ 258 (836)
Q Consensus 179 VA~LV~gVTKl~~i~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~eKq~~iA~ 258 (836)
||.||+||||++++++. .....|+|++||||+||++|+||++||||||||||||+..+|+++|+++|+
T Consensus 98 Va~lV~gvTk~~~~~~~------------~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~iA~ 165 (393)
T 1vj7_A 98 VRDIVDGVTKLGKVEYK------------SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISR 165 (393)
T ss_dssp HHHHHHHHHHHC--------------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHHHHH
T ss_pred HHHHHHHHHhcccCCcc------------cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHHHHH
Confidence 99999999999887531 112458999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhhhcChHHHHHHHHHHHHHhcChHHHHHHHHHHhcccCCCCccccccccccccCCCCCccCccCCCCcccc
Q 003255 259 ETLLIWCSLASRLGLWALKAELEDLCFAVLQPQIFRKMRADLASMWSPRNRVGYSRRITTIVSSPPLDERTASDDESFTT 338 (836)
Q Consensus 259 ETl~IYaPLA~RLGi~~iK~ELEDLaF~~L~P~~y~~i~~~l~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 338 (836)
||++||||||||||||+||||||||||+||+|+.|+.|.+.|.+
T Consensus 166 Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~------------------------------------ 209 (393)
T 1vj7_A 166 ETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNE------------------------------------ 209 (393)
T ss_dssp HHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH------------------------------------
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHH------------------------------------
Confidence 99999999999999999999999999999999999999999975
Q ss_pred hhhhhhhHHhhhhhccccchhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhccCCCCCceE
Q 003255 339 FDEHVLSMKDLLEAVVPFDILSDRRKRTKFLHDLAKSSEAQKKAKVVQDAGIALTSLVACEEALEKELLISTSYIPGMEV 418 (836)
Q Consensus 339 ~~~~~~~~k~ll~av~~fd~l~~r~~r~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~~~~~~~~~~~gi~~ 418 (836)
.|.+|+.+++.+.. .|++.|++ .|+.+
T Consensus 210 ----------------------~r~~r~~~i~~i~~----------------------~l~~~L~~---------~gi~~ 236 (393)
T 1vj7_A 210 ----------------------KRREREALVDDIVT----------------------KIKSYTTE---------QGLFG 236 (393)
T ss_dssp ----------------------THHHHHHHHHHHHH----------------------HHHHHHHT---------TTCCC
T ss_pred ----------------------HHHHHHHHHHHHHH----------------------HHHHHHHh---------cCCce
Confidence 47788888887761 23444544 36778
Q ss_pred EEEEeecChhHHHHHHHhcCCCCCcccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccccccccccCCCCCC
Q 003255 419 TLSSRLKSLYSIFSKMRRKDVGIHKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDGEFDDYIVNPKPSG 498 (836)
Q Consensus 419 ~I~gR~K~~ySI~~Km~rk~~~~~eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~r~kDYIa~PK~NG 498 (836)
.|+||+|++||||+||+|++.+|++|+|++||||||++ ++|||.++++||+.|+|+|++|||||++||+||
T Consensus 237 ~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~---------~~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nG 307 (393)
T 1vj7_A 237 DVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET---------QSDVYAMVGYIHELWRPMPGRFKDYIAAPKANG 307 (393)
T ss_dssp EEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS---------HHHHHHHHHHHHHHSCBCTTCCEETTTSCCTTC
T ss_pred EEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC---------HHHHHHHHHHHHhcCCCCCCcccccccCCCcCC
Confidence 99999999999999999999999999999999999985 899999999999999999999999999999999
Q ss_pred CcceEEEEEcCCCcEEEEEEechhhHHHHHhhhhhhhhccccCCccccccccc------cchHHHhccCCCCCCCC
Q 003255 499 YQSLHTAVQGPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKLQSISSMD------ESDIEASSSLSKDTDDH 568 (836)
Q Consensus 499 YqSLHt~V~~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~~~~~~~~~~~~~------~~l~~~~~~~~~~~e~~ 568 (836)
||||||+|.+|.| ++||||||..||.|||+||||||+||++.......+.++ ++|.+|++...++.||+
T Consensus 308 YqSlH~~v~~p~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~~~~~~~~~~wl~~ll~~~~~~~~~~ef~ 382 (393)
T 1vj7_A 308 YQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNGDAVDF 382 (393)
T ss_dssp CCCEEEEEECSSS-EEEEEEEEHHHHHHHHHTTCC---------------------CHHHHHHHC-----------
T ss_pred cceeEEEEEeCCc-eEEEEEecHHHHHHHHhhHHHHhccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 9999999999999 999999999999999999999999998643210111221 34556676666667776
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=7.4e-43 Score=366.33 Aligned_cols=119 Identities=28% Similarity=0.316 Sum_probs=109.1
Q ss_pred cCCCCCceEEEEEeecChhHHHHHHHhcCCCCC----cccceeeEEEEEcCCCCCCCCccHHHHHHHHHHHHhcCCCccc
Q 003255 410 TSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVHRLWIPIDG 485 (836)
Q Consensus 410 ~~~~~gi~~~I~gR~K~~ySI~~Km~rk~~~~~----eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiIh~~~~pi~~ 485 (836)
..++|+. .|+||+|+++||++||+|++.+++ +|+|++||||||++ ++|||.++++||+.|.|.|.
T Consensus 66 ~~~~~i~--~V~~RvKs~~SI~~Km~Rk~~~~~~~~~~I~Di~GiRII~~~---------~~D~y~v~~~I~~~~~~~~~ 134 (255)
T 3l9d_A 66 KRHSPIE--FVTGRVKPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQF---------VDDVNDVLELLRQRKDMKVI 134 (255)
T ss_dssp TSCCSCC--EEEEEECCHHHHHHHHHHHTCCGGGHHHHCSCSEEEEEEESS---------TTHHHHHHHHHHTCSSSEEE
T ss_pred hccCCcc--eEEeEEcCHHHHHHHHHhcCCCccchhhhccccceEEEEEeC---------HHHHHHHHHHHHhcCCCcee
Confidence 4455543 699999999999999999999987 79999999999985 78999999999999999999
Q ss_pred cccccccCCCCCCCcceEEEEE-------cCCCcEEEEEEechhhHHHHHhhhhhhhhccc
Q 003255 486 EFDDYIVNPKPSGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKE 539 (836)
Q Consensus 486 r~kDYIa~PK~NGYqSLHt~V~-------~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~ 539 (836)
++||||++||+|||||||++|. ++.|.++||||||..||.|||+||++||+|+.
T Consensus 135 ~~KDYIa~PK~nGYrSlH~iv~~p~~~~~g~~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~ 195 (255)
T 3l9d_A 135 QERDYINNLKPSGYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHG 195 (255)
T ss_dssp EEEEESCC-CCCSCCEEEEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHTT
T ss_pred eeeccccCCCCCCceeEEEEEEcccccccCCCceEEEEEECCHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998 45678999999999999999999999999985
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=1.8e-37 Score=321.19 Aligned_cols=169 Identities=25% Similarity=0.290 Sum_probs=130.7
Q ss_pred HHHHHHhhccCCCCCceEEEEEeecChhHHHHHHHhcCCCCC----cccceeeEEEEEcCCCCCCCCccHHHHHHHHHHH
Q 003255 401 ALEKELLISTSYIPGMEVTLSSRLKSLYSIFSKMRRKDVGIH----KVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIV 476 (836)
Q Consensus 401 ~L~~~~~~~~~~~~gi~~~I~gR~K~~ySI~~Km~rk~~~~~----eI~Dl~giRIIv~~~~~~~~~~~~~dCY~vlgiI 476 (836)
.|.+++.....+.+. ..|+||+|+++||++||+|++.+++ +|+|++|+||||++ ++|||.++++|
T Consensus 28 ~l~~~~~~~~~~~~i--~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~~---------~~d~y~v~~~i 96 (226)
T 2be3_A 28 GIRKQYRKQNKHSPI--EFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQF---------VDDVKEVVDIL 96 (226)
T ss_dssp HHHHHHHHTTCCCSE--EEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEESC---------GGGHHHHHHHH
T ss_pred HHHHHHHHhhCCCCc--ceEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEcC---------HHHHHHHHHHH
Confidence 445555444455443 2599999999999999999999998 99999999999985 78999999999
Q ss_pred HhcCCCccccccccccCCCCCCCcceEEEEE-------cCCCcEEEEEEechhhHHHHHhhhhhhhhccccCCcc--cc-
Q 003255 477 HRLWIPIDGEFDDYIVNPKPSGYQSLHTAVQ-------GPDGSALEVQIRTQKMHEYAEHGLAAHWLYKETGNKL--QS- 546 (836)
Q Consensus 477 h~~~~pi~~r~kDYIa~PK~NGYqSLHt~V~-------~p~g~~vEIQIRT~~Mh~~AE~G~AAHw~YK~~~~~~--~~- 546 (836)
|+.|.|.|.++||||++||+|||||||++|. ++.|.++||||||..||.|||+||++||+||++.... ..
T Consensus 97 ~~~~~~~~~~~kDyI~~PK~nGYrSlH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~~~~~~~l 176 (226)
T 2be3_A 97 HKRQDMRIIQERDYITHRKASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFPDEIKKRL 176 (226)
T ss_dssp HTCSSEEEEEEEETTTTCCTTSCCCEEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HhccCCceeeecchhhcCCCCCceEEEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCCcHHHHHHH
Confidence 9999999999999999999999999999997 5678899999999999999999999999999643211 00
Q ss_pred ------ccccccchHHHhccCCCCCCCCCccccccccccc
Q 003255 547 ------ISSMDESDIEASSSLSKDTDDHNPLDTDLFQKYS 580 (836)
Q Consensus 547 ------~~~~~~~l~~~~~~~~~~~e~~~~~~~dvftPkg 580 (836)
...+++++.++++.+.++.+|++.++.++|..-|
T Consensus 177 ~~~a~~~~~~d~~m~~i~~~i~~~~~~~~~~~~~~~~~~~ 216 (226)
T 2be3_A 177 EITARIAHQLDEEMGEIRDDIQEAQALFDPLSRKLNDGVG 216 (226)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHhhhcc
Confidence 1123345566666666667888888888875433
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.6e-33 Score=280.77 Aligned_cols=166 Identities=25% Similarity=0.348 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHhhcCCccc--cCcchhhHHHHHHHHHH-HcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhc
Q 003255 100 NDEQVQKAIAFAKRAHHGQFRK--TGDPYLTHCIHTGRILA-MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176 (836)
Q Consensus 100 ~~~~l~~A~~fA~~aH~GQ~Rk--sGePYI~Hpl~VA~ILA-~l~~~~G~~D~dtIiAALLHDvVEDT~~T~eeI~~~FG 176 (836)
+.+.+.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++++ .|.++++||||||+||||.+|.++|++.||
T Consensus 5 d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~----~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG 80 (179)
T 3nqw_A 5 PSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACI----TDEGVLMAALLHDVVEDTDASFEDVEKLFG 80 (179)
T ss_dssp CCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCC----CCHHHHHHHHTTTHHHHSSCCHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCC----CCHHHHHHHHhhhHHhcCCCCHHHHHHHHC
Confidence 4578999999999999999998 59999999999999999 6653 268999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHHhhhhhcCCChHH-HHH
Q 003255 177 DEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPAK-ARA 255 (836)
Q Consensus 177 ~eVA~LV~gVTKl~~i~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~eK-q~~ 255 (836)
++|+.||+||||++.+++..+ ...|.+++|+ +|+||++||||||+||||++..+|+++ ...
T Consensus 81 ~~Va~lV~gvtk~~~~~~~~~------------~~~q~e~~r~------~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~ 142 (179)
T 3nqw_A 81 PDVCGLVREVTDDKSLEKQER------------KRLQIENAAK------SSCRAKLIKLADKLDNLRDLQVNTPTGWTQE 142 (179)
T ss_dssp HHHHHHHHHTCCCTTSCHHHH------------HHHHHHSSTT------SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHH
T ss_pred HHHHHHHHHHHhccccCHHHH------------HHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHhhCCcccccHH
Confidence 999999999999988764321 1346788876 799999999999999999999887764 233
Q ss_pred HHHHhHHHHHHhhhhc--ChHHHHHHHHHHHHHh
Q 003255 256 VAQETLLIWCSLASRL--GLWALKAELEDLCFAV 287 (836)
Q Consensus 256 iA~ETl~IYaPLA~RL--Gi~~iK~ELEDLaF~~ 287 (836)
-+++-+..+.++++.| |=..+..+|.++.=+|
T Consensus 143 r~~~Y~~~~~~v~~~l~~~n~~l~~~~~~~~~~~ 176 (179)
T 3nqw_A 143 RRDQYFVWAKKVVDNLRGTNANLELKLDEIFRQR 176 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 4556666667777777 5567777777776554
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=99.97 E-value=3.5e-32 Score=272.40 Aligned_cols=147 Identities=30% Similarity=0.420 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHHhhcCCcccc--CcchhhHHHHHHHHHH-HcCCCCCCChhhHHHHhhhhcccccccCCHHHHHHHhc
Q 003255 100 NDEQVQKAIAFAKRAHHGQFRKT--GDPYLTHCIHTGRILA-MLIPSSGKRAVDTVVAGILHDVVDDACESLGSIEEEFG 176 (836)
Q Consensus 100 ~~~~l~~A~~fA~~aH~GQ~Rks--GePYI~Hpl~VA~ILA-~l~~~~G~~D~dtIiAALLHDvVEDT~~T~eeI~~~FG 176 (836)
+.+++.+|+.||.++|.||+|++ |+|||.||++||.||+ ++++ .|.++++||||||+||||++|.++|++.||
T Consensus 3 d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~----~d~~~i~AALLHDvvEDt~~t~e~i~~~FG 78 (178)
T 3nr1_A 3 EAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGI----TDIVVLQAALLHDTVEDTDTTLDEVELHFG 78 (178)
T ss_dssp HHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCC----CCHHHHHHHHHTTHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCC----CCHHHHHHHHhhhHHhcCCCCHHHHHHHHC
Confidence 45789999999999999999987 9999999999999995 5542 378999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhhcCCccEEEehhhhHHHhhhhhcCCChH-----
Q 003255 177 DEVAKLVAGVSRLSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPPA----- 251 (836)
Q Consensus 177 ~eVA~LV~gVTKl~~i~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAma~D~RVvLIKLADRLhNMRtL~~lp~e----- 251 (836)
++|+.||+||||++.+++..+ ...|.+++| .+|+||++||||||+||||++..+||+
T Consensus 79 ~~Va~lV~gvTk~~~~~~~~~------------~~~q~e~~~------~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~ 140 (178)
T 3nr1_A 79 AQVRRLVEEVTDDKTLPKLER------------KRLQVEQAP------HSSPGAKLVKLADKLYNLRDLNRCTPEGWSEH 140 (178)
T ss_dssp HHHHHHHHHTCCCTTSCHHHH------------HHHHHHHGG------GSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHH
T ss_pred HHHHHHHHHHHhccccchhhH------------HHHHHHHHH------hCCchhHHHHHHHHHHHHHHhhhCCccccCHH
Confidence 999999999999987764321 123666665 589999999999999999999988764
Q ss_pred HHHHHHHHhHHHHHHhh
Q 003255 252 KARAVAQETLLIWCSLA 268 (836)
Q Consensus 252 Kq~~iA~ETl~IYaPLA 268 (836)
+..+|-.|...|..-|.
T Consensus 141 r~~~Y~~~~~~v~~~l~ 157 (178)
T 3nr1_A 141 RVQEYFEWAAQVVKGLQ 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35677888777777553
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.78 E-value=7.6e-20 Score=160.34 Aligned_cols=62 Identities=29% Similarity=0.487 Sum_probs=55.3
Q ss_pred CCCCceEEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003255 775 VVPGEVVIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 775 dl~~~~v~VftP~G~v~~Lp~GsT~~DfAy~ih--v~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
|||+++||||||+|+++.||.||||+||||+|| ++.++ ++|||++|||+|+|++||+|||+|
T Consensus 2 ~l~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit 67 (78)
T 3hvz_A 2 DLAPEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLT 67 (78)
T ss_dssp ----CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEE
T ss_pred CCcCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEc
Confidence 789999999999999999999999999999999 77665 799999999999999999999986
No 7
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.23 E-value=1e-11 Score=111.80 Aligned_cols=58 Identities=29% Similarity=0.412 Sum_probs=51.2
Q ss_pred ceEEEEc-CCCCe------EeC-CCCCCHHHHHHHhC--CCCce--EE-------ECCEEeCCCccCCCCCEEEEeC
Q 003255 779 EVVIVCW-PNGEI------MRL-RSGSTAADAAMKVG--LEGKL--VL-------VNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 779 ~~v~Vft-P~G~v------~~L-p~GsT~~DfAy~ih--v~~~~--~~-------VNg~lvpl~~~L~~GD~VeI~t 836 (836)
+-|.||| |+|+. +.| |.|||+.||||+|| ++..+ |. +|||.|+++|+|+|||+|+|++
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~ 86 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVK 86 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEE
T ss_pred CeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEe
Confidence 4688999 99985 889 99999999999999 77754 44 4999999999999999999974
No 8
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=99.04 E-value=1.8e-10 Score=97.91 Aligned_cols=56 Identities=43% Similarity=0.478 Sum_probs=50.9
Q ss_pred EEEEcCCCCeEeCCCCCCHHHHHHHhC--CCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003255 781 VIVCWPNGEIMRLRSGSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 781 v~VftP~G~v~~Lp~GsT~~DfAy~ih--v~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
+.|+.|+|+.+++|.|+|+.|+|+.++ ++.++ ++|||+++|++++|++||.|||+|
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEE
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEE
Confidence 679999999999999999999999997 44443 699999999999999999999985
No 9
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.88 E-value=4.4e-10 Score=98.47 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=47.1
Q ss_pred cccccccc---ccCCCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCCC
Q 003255 574 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 632 (836)
Q Consensus 574 dvftPkg~---Lp~G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~~ 632 (836)
.+|||+|+ ||.|+|+.+| +|++|+||+| ||+ +|||+++|++||+|||+|+++
T Consensus 9 ~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkV-----NG~--~v~L~~~L~~gd~VeIit~~~ 70 (78)
T 3hvz_A 9 FVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKV-----DGR--IVPIDYKVKTGEIIDVLTTKE 70 (78)
T ss_dssp EEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEE-----TTE--EECTTCBCCTTCBEEEEECC-
T ss_pred EEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEE-----CCE--EcCCCcccCCCCEEEEEccCc
Confidence 37899995 7999998876 7899999999 999 999999999999999999974
No 10
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=98.76 E-value=8.2e-09 Score=91.24 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=52.6
Q ss_pred CceEEEEcCCCCeEeCCC-CCCHHHHHHHhC--CCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003255 778 GEVVIVCWPNGEIMRLRS-GSTAADAAMKVG--LEGKL--VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 778 ~~~v~VftP~G~v~~Lp~-GsT~~DfAy~ih--v~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
...+-|..|+|+++++|. |+|+.|||+.|| ++.++ ++|||++++|+++|++|+.||++|
T Consensus 9 ~~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt 72 (88)
T 1wwt_A 9 SKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLK 72 (88)
T ss_dssp CCEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECS
T ss_pred CCCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEe
Confidence 355778889999999998 999999999997 55554 699999999999999999999986
No 11
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.60 E-value=1.6e-08 Score=112.34 Aligned_cols=58 Identities=28% Similarity=0.304 Sum_probs=52.7
Q ss_pred ceEEEEc---------CCC----CeEeCCCCCCHHHHHHHhC--CCCce--E--EECCEEeCCCccCCCCCEEEEeC
Q 003255 779 EVVIVCW---------PNG----EIMRLRSGSTAADAAMKVG--LEGKL--V--LVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 779 ~~v~Vft---------P~G----~v~~Lp~GsT~~DfAy~ih--v~~~~--~--~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
+-|+||| |+| +.+.||.||||.||||+|| ++..+ | .+||+.|+++|+|+|||+|+|+|
T Consensus 318 ~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 318 KLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp CEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEE
T ss_pred CCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEe
Confidence 6788999 999 9999999999999999999 66654 5 66999999999999999999986
No 12
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=97.69 E-value=2.7e-05 Score=67.38 Aligned_cols=48 Identities=27% Similarity=0.249 Sum_probs=42.0
Q ss_pred CCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCCccCCCCCEEEEeC
Q 003255 788 GEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 788 G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
...+++|.|+|..|+.-.+|+.... +.|||++||.+..++ ||.|||++
T Consensus 12 ~~~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~~l~-GD~VeIv~ 61 (74)
T 2l32_A 12 TSEVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQSVE-VDRVKVLR 61 (74)
T ss_dssp EEEEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTSSSC-CCCEEECS
T ss_pred ceeEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHHCCC-CCEEEEEE
Confidence 3448999999999999999976654 699999999999886 99999984
No 13
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=97.68 E-value=1.4e-05 Score=72.82 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=44.7
Q ss_pred ceEEEEcCCCCe--EeCCCCCCHHHHHHHhCCCC---------ceEEECCEEeCCCccCCCCCEEEEe
Q 003255 779 EVVIVCWPNGEI--MRLRSGSTAADAAMKVGLEG---------KLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 779 ~~v~VftP~G~v--~~Lp~GsT~~DfAy~ihv~~---------~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
+++|-.-.+..+ +++|.|+|+.|+.-+.|+.. ..+-|||++||+++.|++||+|||.
T Consensus 16 ~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 16 EIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEEC
T ss_pred EEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEE
Confidence 455553333333 47899999999999998422 3479999999999999999999996
No 14
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=97.61 E-value=3.5e-05 Score=66.74 Aligned_cols=52 Identities=35% Similarity=0.493 Sum_probs=45.8
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003255 785 WPNGEIMRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 785 tP~G~v~~Lp~GsT~~DfAy~ihv~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
..+|+.+++|.|+|..|+...+++... .+-|||++||.+++|++||.|+|+.
T Consensus 19 ~~n~~~~~~~~~~Tv~dLl~~L~~~~~~v~VavNg~~v~~~~~L~dGD~V~i~p 72 (77)
T 1rws_A 19 RNIEKEIEWREGMKVRDILRAVGFNTESAIAKVNGKVVLEDDEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCCCCCCCSSCCHHHHHHTTTCSSCSSCEEETTEEECSSSCCCSSCCCBCSC
T ss_pred ccCCEEEECCCCCcHHHHHHHhCCCCcCEEEEECCEECCCCCCcCCCCEEEEEc
Confidence 568888999999999999999985543 3799999999999999999999973
No 15
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=97.57 E-value=2.2e-05 Score=70.91 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=45.2
Q ss_pred ccc-cccc---------c-cCCCceee-------ecCCceeEeEEE--EEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003255 575 LFQ-KYSS---------L-KMGHPVIR-------VEGSNLLAAVII--RVEKGGRELLVAVSFGLAASEVVADRRPSFQ 633 (836)
Q Consensus 575 vft-Pkg~---------L-p~G~tv~~-------~vG~~~~gAkV~--~v~~ngr~~lVpl~~~L~~gd~Vei~ts~~p 633 (836)
+|| |+|. | |.|+||.+ .+|.+|..|.|- ++.+||+ -|+++++|++||+|+|++.+.+
T Consensus 14 VYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~q--rVgldh~L~d~DVV~Iv~~~~~ 90 (93)
T 2eki_A 14 IYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQ--KVGKDHTLEDEDVIQIVKKSGP 90 (93)
T ss_dssp EEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSE--EECSSCCCCSSEEECEEECCSC
T ss_pred EEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCE--ECCCCcEecCCCEEEEEeCCCC
Confidence 566 6773 5 88988554 599999999862 2445788 7999999999999999987654
No 16
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=97.49 E-value=7.2e-05 Score=65.32 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=46.3
Q ss_pred cCCCCeEeCC--CCCCHHHHHHHhCCC-Cce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003255 785 WPNGEIMRLR--SGSTAADAAMKVGLE-GKL--VLVNGQLVLPN----TELKDGDIVEVRV 836 (836)
Q Consensus 785 tP~G~v~~Lp--~GsT~~DfAy~ihv~-~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 836 (836)
+=||+-+++| .|+|..|+.-.+++. .+. +-|||.+||-+ |.|++||.|||++
T Consensus 4 ~vNGe~~e~~~~~~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 4 TVNGKPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp EETTEEEECSSCSCEEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEECC
T ss_pred EECCEEEEcCCCCCCcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEe
Confidence 4479999999 999999999999977 543 69999999997 9999999999985
No 17
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=97.44 E-value=0.00011 Score=61.61 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=45.4
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCc--eEEECCEEeCC----CccCCCCCEEEEeC
Q 003255 785 WPNGEIMRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLP----NTELKDGDIVEVRV 836 (836)
Q Consensus 785 tP~G~v~~Lp~GsT~~DfAy~ihv~~~--~~~VNg~lvpl----~~~L~~GD~VeI~t 836 (836)
+=||+-+++|.|+|..|+--.+++... .+-|||++||. +|+|++||.|+|++
T Consensus 4 ~vNg~~~~~~~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 4 LFNDQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp EESSCEECCCTTCCHHHHHHHHTCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEEE
T ss_pred EECCEEEEcCCCCcHHHHHHHcCCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEEe
Confidence 448999999999999999999985543 36999999998 89999999999973
No 18
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=97.40 E-value=0.00012 Score=63.04 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=44.8
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003255 785 WPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 836 (836)
Q Consensus 785 tP~G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 836 (836)
+=||+-+++ .|+|..|+.-.+++..+. +-|||.+||-+ |.|++||.|||++
T Consensus 4 ~vNG~~~e~-~~~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 4 TINGEQREV-QSASVAALMTELDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEILT 60 (73)
T ss_dssp EETTEEECC-CCSBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEEC
T ss_pred EECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEc
Confidence 347999999 999999999999976653 69999999995 8999999999985
No 19
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=97.39 E-value=0.00017 Score=64.31 Aligned_cols=53 Identities=26% Similarity=0.317 Sum_probs=46.6
Q ss_pred EcCCCCeEeCCCC-CCHHHHHHHhCCCCce--EEECCEEeCC----CccCCCCCEEEEeC
Q 003255 784 CWPNGEIMRLRSG-STAADAAMKVGLEGKL--VLVNGQLVLP----NTELKDGDIVEVRV 836 (836)
Q Consensus 784 ftP~G~v~~Lp~G-sT~~DfAy~ihv~~~~--~~VNg~lvpl----~~~L~~GD~VeI~t 836 (836)
++=||+-+++|.| +|..|+--.+++.... +-|||++||. +++|++||.|||++
T Consensus 23 I~vNGe~~el~~~~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 23 LQLNGKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp EEETTEEECCSSSCCBHHHHHHHTTCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEE
T ss_pred EEECCEEEECCCCCCcHHHHHHHhCCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEc
Confidence 5669999999999 9999999999965543 6999999998 79999999999974
No 20
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=97.20 E-value=0.00034 Score=59.45 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=43.6
Q ss_pred CCCe----EeCCCCCCHHHHHHHhCCCCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003255 787 NGEI----MRLRSGSTAADAAMKVGLEGK--LVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 787 ~G~v----~~Lp~GsT~~DfAy~ihv~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
+|+- +++|.|+|..|+--.+++... .+-|||.+||.++.|++||.|+|++
T Consensus 10 Ng~~~~~~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~~L~~gD~V~ii~ 65 (70)
T 1ryj_A 10 ITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEVIR 65 (70)
T ss_dssp EETTEEEEEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTSBCCTTCEEEEEE
T ss_pred eCccCceeEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcccCCCCCEEEEEe
Confidence 5666 999999999999999985543 3699999999999999999999973
No 21
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=97.18 E-value=0.00014 Score=61.34 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=43.6
Q ss_pred cccccccc---ccCCCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCCC
Q 003255 574 DLFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSF 632 (836)
Q Consensus 574 dvftPkg~---Lp~G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~~ 632 (836)
.++.|.|. +|.|.|+.++ ++.++++|+| ||+ ++|++++|+.||.|||+|...
T Consensus 4 ~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~v-----Ng~--lvdl~~~L~~~~~Veivt~~~ 65 (73)
T 2kmm_A 4 MVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKV-----NHK--LVPLSYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp EEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEE-----TTE--ECCTTCBCCSSSBEEEEECCC
T ss_pred EEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEE-----CCE--EeCCCcCcCCCCEEEEEECCC
Confidence 45667774 7999998766 3467999999 999 999999999999999998753
No 22
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=97.15 E-value=0.0004 Score=57.91 Aligned_cols=51 Identities=41% Similarity=0.570 Sum_probs=43.9
Q ss_pred cCCCCeEeCCCCCCHHHHHHHhCCCCce--EEECCEEeCCC----ccCCCCCEEEEeC
Q 003255 785 WPNGEIMRLRSGSTAADAAMKVGLEGKL--VLVNGQLVLPN----TELKDGDIVEVRV 836 (836)
Q Consensus 785 tP~G~v~~Lp~GsT~~DfAy~ihv~~~~--~~VNg~lvpl~----~~L~~GD~VeI~t 836 (836)
+=||+-+++ .|+|..|+--.+++.... +-|||++||.+ ++|++||.|+|++
T Consensus 3 ~vNg~~~~~-~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 3 WLNGEPRPL-EGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp EETTEEECC-TTCCHHHHHHHHTBCGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEE
T ss_pred EECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECCccccCCcCCCCCCEEEEEe
Confidence 348999999 999999999999865543 69999999976 9999999999973
No 23
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=96.82 E-value=0.00049 Score=60.47 Aligned_cols=53 Identities=6% Similarity=-0.068 Sum_probs=44.1
Q ss_pred ccccccccc---cC-CCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003255 574 DLFQKYSSL---KM-GHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 633 (836)
Q Consensus 574 dvftPkg~L---p~-G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~~p 633 (836)
.+.-|.|.. |. |.|+.++ ++.+|++|+| ||+ +++|+++|+.|+.||++|...+
T Consensus 13 ~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakv-----Ng~--l~dL~~~l~~d~~ve~vt~~~~ 76 (88)
T 1wwt_A 13 KVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKV-----NNV--VWDLDRPLEEDCTLELLKFEDE 76 (88)
T ss_dssp EEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEE-----SSS--EECSSSCCCSSEEEEECSSCCS
T ss_pred EEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEE-----CCE--EECCCcCcCCCCEEEEEeCCCH
Confidence 345577754 86 8887765 5788999999 999 9999999999999999998754
No 24
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=96.68 E-value=0.0012 Score=56.27 Aligned_cols=48 Identities=21% Similarity=0.110 Sum_probs=39.4
Q ss_pred CeEeCCCCCCHHHHHHHhCC-----CCc--eEEECCEEeCCCccCCCCCEEEEeC
Q 003255 789 EIMRLRSGSTAADAAMKVGL-----EGK--LVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 789 ~v~~Lp~GsT~~DfAy~ihv-----~~~--~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
+-+++|.|+|..|.--.++. ... .+-|||++|+.+++|++||.|+|+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIP 72 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEEC
Confidence 34678999999998877752 222 5799999999999999999999973
No 25
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=96.25 E-value=0.0035 Score=56.35 Aligned_cols=47 Identities=34% Similarity=0.461 Sum_probs=38.7
Q ss_pred CeEeCCCCCCHHHHHHHhCC----------------CCc-eEEECCEEeCCCccCCCCCEEEEe
Q 003255 789 EIMRLRSGSTAADAAMKVGL----------------EGK-LVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 789 ~v~~Lp~GsT~~DfAy~ihv----------------~~~-~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
+.+++|.|+|..|.--.+.. ... .+.|||++|+++++|++||.|+|+
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVF 92 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEE
Confidence 45678999999998777641 123 379999999999999999999997
No 26
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=96.20 E-value=0.0049 Score=54.05 Aligned_cols=46 Identities=24% Similarity=0.200 Sum_probs=38.2
Q ss_pred eEeCCCCCCHHHHHHHhC-----CC------------CceEEECCEEeCCCccCCCCCEEEEe
Q 003255 790 IMRLRSGSTAADAAMKVG-----LE------------GKLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 790 v~~Lp~GsT~~DfAy~ih-----v~------------~~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
.+++|.|+|+.|.--.+. +. ...+.|||+.|+++++|++||.|.|+
T Consensus 21 ~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~ 83 (89)
T 3po0_A 21 RVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALF 83 (89)
T ss_dssp EEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEE
Confidence 468999999999877763 11 13479999999999999999999987
No 27
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=96.09 E-value=0.0017 Score=66.45 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=45.2
Q ss_pred ccccccc---ccCCCceeee-------cCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003255 575 LFQKYSS---LKMGHPVIRV-------EGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 633 (836)
Q Consensus 575 vftPkg~---Lp~G~tv~~~-------vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~~p 633 (836)
+.+|+|. +|.|.|+.++ ++.+|++|+| ||+ +++|+++|++|+.||++|...+
T Consensus 4 I~~p~G~~~~~~~g~T~~dia~~i~~~l~~~~vaakv-----Ng~--l~dL~~~l~~~~~ve~it~~~~ 65 (224)
T 1tke_A 4 ITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRV-----NGE--LVDACDLIENDAQLSIITAKDE 65 (224)
T ss_dssp EECTTSCEEECSSCBCHHHHHHHHCHHHHHHCCEEEE-----TTE--EEETTCCBCSCEEEEEECTTSH
T ss_pred EEeCCCCEEEecCCCCHHHHHHHHhhhcccceEEEEE-----CCE--EeccceEcCCCCeEEEEecCch
Confidence 4567884 7999998776 5788999999 999 9999999999999999998764
No 28
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=95.84 E-value=0.012 Score=50.48 Aligned_cols=42 Identities=26% Similarity=0.175 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHhCC-----------CCceEEECCEEeCCCccCCCCCEEEEe
Q 003255 794 RSGSTAADAAMKVGL-----------EGKLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 794 p~GsT~~DfAy~ihv-----------~~~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
|.|+|+.|.--.++. +...+-|||++|+++++|++||.|+|+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF 75 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEe
Confidence 688999998777751 223479999999999999999999997
No 29
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.58 E-value=0.0017 Score=72.06 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=36.6
Q ss_pred ccCCCc-------eeeecCCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCC
Q 003255 582 LKMGHP-------VIRVEGSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPS 631 (836)
Q Consensus 582 Lp~G~t-------v~~~vG~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~ 631 (836)
||.|+| ||+.+|+.|++|.- ..||+ .|+++|.|++||+|+|+|++
T Consensus 345 l~~G~t~~d~a~~iH~d~~~~f~~a~~---~~~~~--~~g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 345 MKKGSTPRDLAFKVHTDLGKGFLYAIN---ARTKR--RVGEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp EETTCCHHHHHHHHCHHHHHTEEEEEE---TTTCS--BCCTTCCCCTTEEEEEEEC-
T ss_pred eCCCCCHHHHHHHHhHHHHhhhhhhHH---hcCCE--EcCCCccccCCCEEEEEeCC
Confidence 688988 56669999999941 12788 68999999999999999875
No 30
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=94.99 E-value=0.03 Score=48.73 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=37.6
Q ss_pred eEeCCCCCCHHHHHHHhC--C---------------CCceEEECCEEeC----CCccCCCCCEEEEeC
Q 003255 790 IMRLRSGSTAADAAMKVG--L---------------EGKLVLVNGQLVL----PNTELKDGDIVEVRV 836 (836)
Q Consensus 790 v~~Lp~GsT~~DfAy~ih--v---------------~~~~~~VNg~lvp----l~~~L~~GD~VeI~t 836 (836)
-+++|.|+|..|.--.+. . ....+.|||++++ ++++|++||.|+|+.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeC
Confidence 456788999999777664 1 2334799999998 899999999999973
No 31
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.01 Score=65.62 Aligned_cols=44 Identities=27% Similarity=0.253 Sum_probs=35.1
Q ss_pred CCCC-CCHHHHHHHhC--CCC--ce-------EEECCEEeCCCccCCCCCEEEEeC
Q 003255 793 LRSG-STAADAAMKVG--LEG--KL-------VLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 793 Lp~G-sT~~DfAy~ih--v~~--~~-------~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
+++| ||+-|||..|| ... +. +|-+||.|-.+|.|+|||||+|++
T Consensus 320 ~~a~~at~~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 320 LRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILK 375 (376)
T ss_dssp EBTTBCBHHHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEE
T ss_pred ccCCCCcHHHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEe
Confidence 3445 99999999999 221 22 466889999999999999999975
No 32
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=93.76 E-value=0.081 Score=44.92 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=36.4
Q ss_pred eEeCCCCCCHHHHHHHhCCC--------CceEEECCEE-eCCCccCCCCCEEEEe
Q 003255 790 IMRLRSGSTAADAAMKVGLE--------GKLVLVNGQL-VLPNTELKDGDIVEVR 835 (836)
Q Consensus 790 v~~Lp~GsT~~DfAy~ihv~--------~~~~~VNg~l-vpl~~~L~~GD~VeI~ 835 (836)
.+++ .|+|..|.--.++.. ...+-|||+. +..+++|++||.|+|+
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLL 68 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEE
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEE
Confidence 4667 899999987777522 2336999999 7799999999999997
No 33
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.32 E-value=0.14 Score=56.42 Aligned_cols=56 Identities=23% Similarity=0.226 Sum_probs=42.3
Q ss_pred eEEEEcC--C-CCeEeCCCCCCHHHHHHHhC----CCCceEEE-----------------CC--EEeCCCccCCCCCEEE
Q 003255 780 VVIVCWP--N-GEIMRLRSGSTAADAAMKVG----LEGKLVLV-----------------NG--QLVLPNTELKDGDIVE 833 (836)
Q Consensus 780 ~v~VftP--~-G~v~~Lp~GsT~~DfAy~ih----v~~~~~~V-----------------Ng--~lvpl~~~L~~GD~Ve 833 (836)
-+.+||- + -+-..+++|+|+-|+|..|| -|=..|.| .| |++--+|.++|||||+
T Consensus 284 li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~ 363 (368)
T 2dby_A 284 LLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIY 363 (368)
T ss_dssp EEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEE
T ss_pred CEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEE
Confidence 4556772 1 24577899999999999999 22233444 26 8889999999999999
Q ss_pred Ee
Q 003255 834 VR 835 (836)
Q Consensus 834 I~ 835 (836)
++
T Consensus 364 ~~ 365 (368)
T 2dby_A 364 VL 365 (368)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 34
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=92.21 E-value=0.16 Score=44.65 Aligned_cols=42 Identities=31% Similarity=0.359 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHhC---------C-----CC-----ceEEECCEEeC----CCccCCCCCEEEEe
Q 003255 794 RSGSTAADAAMKVG---------L-----EG-----KLVLVNGQLVL----PNTELKDGDIVEVR 835 (836)
Q Consensus 794 p~GsT~~DfAy~ih---------v-----~~-----~~~~VNg~lvp----l~~~L~~GD~VeI~ 835 (836)
+.|+|+.|.--.+. + ++ ..+.|||+.|+ ++|+|++||.|.|+
T Consensus 23 ~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 23 ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTIL 87 (93)
T ss_dssp ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEE
T ss_pred cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEE
Confidence 46899999776663 1 11 24799999999 79999999999986
No 35
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=90.76 E-value=0.2 Score=45.04 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=34.4
Q ss_pred EeCCCCCCHHHHHHHhC-----CCC-----------c-------eEEECCEEe----CCCccCCCCCEEEEe
Q 003255 791 MRLRSGSTAADAAMKVG-----LEG-----------K-------LVLVNGQLV----LPNTELKDGDIVEVR 835 (836)
Q Consensus 791 ~~Lp~GsT~~DfAy~ih-----v~~-----------~-------~~~VNg~lv----pl~~~L~~GD~VeI~ 835 (836)
++++ |+|..|.--.+. +.. . .+.|||+.| .++|+|++||.|+|+
T Consensus 23 ~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 23 LPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGIL 93 (99)
T ss_dssp EEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEE
T ss_pred EEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEE
Confidence 3555 899999776663 111 1 579999999 689999999999997
No 36
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=89.98 E-value=0.17 Score=51.70 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=24.8
Q ss_pred CceEEECCEEeCCCccCCCCCEEEEeC
Q 003255 810 GKLVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 810 ~~~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
...++|||++++|+++|++|+.||++|
T Consensus 35 ~vaakvNg~l~dL~~~l~~~~~ve~it 61 (224)
T 1tke_A 35 CIAGRVNGELVDACDLIENDAQLSIIT 61 (224)
T ss_dssp CCEEEETTEEEETTCCBCSCEEEEEEC
T ss_pred eEEEEECCEEeccceEcCCCCeEEEEe
Confidence 456799999999999999999999986
No 37
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=89.87 E-value=0.23 Score=54.66 Aligned_cols=57 Identities=21% Similarity=0.196 Sum_probs=42.5
Q ss_pred ceEEEEcCCC---CeEeCCCCCCHHHHHHHhC--C--CCceEEE-----------------CC--EEeCCCccCCCCCEE
Q 003255 779 EVVIVCWPNG---EIMRLRSGSTAADAAMKVG--L--EGKLVLV-----------------NG--QLVLPNTELKDGDIV 832 (836)
Q Consensus 779 ~~v~VftP~G---~v~~Lp~GsT~~DfAy~ih--v--~~~~~~V-----------------Ng--~lvpl~~~L~~GD~V 832 (836)
+-+.+||-.- +-..+++|+|+-|+|..|| + |=..|.| -| |++--+|.++|||||
T Consensus 278 ~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii 357 (363)
T 1jal_A 278 NLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVM 357 (363)
T ss_dssp TEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEE
T ss_pred CCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEE
Confidence 3456777222 4577999999999999999 1 1123444 26 888999999999999
Q ss_pred EEe
Q 003255 833 EVR 835 (836)
Q Consensus 833 eI~ 835 (836)
+++
T Consensus 358 ~f~ 360 (363)
T 1jal_A 358 HFR 360 (363)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 38
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=89.78 E-value=0.4 Score=49.32 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 100 NDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 100 ~~~~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
..+.+.++.+|+.+.+.+. .+..-+.|...|+.....+....|....-..+||||||+..
T Consensus 3 ~~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 3 EQAILQSAEAWVKKQLMDE---YSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLID 62 (223)
T ss_dssp CHHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 3567899999999987653 23344889999887654332222333345668999999985
No 39
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=89.35 E-value=0.32 Score=48.95 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccccc
Q 003255 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDDA 164 (836)
Q Consensus 101 ~~~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVEDT 164 (836)
.+.+.++..+......+. ....-+.|.+.|+.+...+....|....-..+||||||+....
T Consensus 4 ~~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 4 EEIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 456777777777765532 1222389999988776443221122223456999999997654
No 40
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=87.76 E-value=0.58 Score=46.23 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=36.1
Q ss_pred eEeCCCCCCHHHHHHHhCC----------------CCceEEECCEEeCC----CccCCCCCEEEEeC
Q 003255 790 IMRLRSGSTAADAAMKVGL----------------EGKLVLVNGQLVLP----NTELKDGDIVEVRV 836 (836)
Q Consensus 790 v~~Lp~GsT~~DfAy~ihv----------------~~~~~~VNg~lvpl----~~~L~~GD~VeI~t 836 (836)
-++++. +|..|.--.++. ....+.|||++|+. +|+|++||.|+|+.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEEC
Confidence 456774 999997777641 22247999999999 99999999999973
No 41
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=87.11 E-value=0.53 Score=48.26 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 97 PIFNDEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 97 ~~~~~~~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
+.++.+.+.++..+......++ ....-+.|.+.|+.....+....|....-..+||||||+..
T Consensus 5 ~~~~~~~i~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 5 PMITETQLTAIQTYALQKLAHD---HSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp -CCCHHHHHHHHHHHHTSSTTC---CSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHHHHhcc---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 4456677888888887776532 12223889999887764432211222234569999999985
No 42
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=85.61 E-value=0.48 Score=52.75 Aligned_cols=56 Identities=23% Similarity=0.270 Sum_probs=41.3
Q ss_pred eEEEEcCCC---CeEeCCCCCCHHHHHHHhC--CCC--ceE-----------------EECC--EEeCCCccCCCCCEEE
Q 003255 780 VVIVCWPNG---EIMRLRSGSTAADAAMKVG--LEG--KLV-----------------LVNG--QLVLPNTELKDGDIVE 833 (836)
Q Consensus 780 ~v~VftP~G---~v~~Lp~GsT~~DfAy~ih--v~~--~~~-----------------~VNg--~lvpl~~~L~~GD~Ve 833 (836)
-+.+||-.. +-..+++|+|+-|+|..|| +.- ..| |=.| |.+--+|.++|||||+
T Consensus 305 li~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~ 384 (396)
T 2ohf_A 305 LEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIF 384 (396)
T ss_dssp EEEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEE
T ss_pred CEEEECCCCCcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEE
Confidence 345666322 4567899999999999999 221 222 2234 8999999999999999
Q ss_pred Ee
Q 003255 834 VR 835 (836)
Q Consensus 834 I~ 835 (836)
++
T Consensus 385 f~ 386 (396)
T 2ohf_A 385 FK 386 (396)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 43
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=85.44 E-value=0.73 Score=41.21 Aligned_cols=45 Identities=22% Similarity=0.348 Sum_probs=33.8
Q ss_pred EeCC--CCCCHHHHHHHhC--C-C----------------CceEEECCEEeC----CCccCCCCCEEEEe
Q 003255 791 MRLR--SGSTAADAAMKVG--L-E----------------GKLVLVNGQLVL----PNTELKDGDIVEVR 835 (836)
Q Consensus 791 ~~Lp--~GsT~~DfAy~ih--v-~----------------~~~~~VNg~lvp----l~~~L~~GD~VeI~ 835 (836)
+++| .|+|..|.--.+. . + ...+.|||+.+. ++|+|++||.|.|+
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 3567 8999999766652 1 1 113799999764 89999999999886
No 44
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=82.91 E-value=0.34 Score=43.89 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=31.0
Q ss_pred cccCCCceeee---cCC--ce-----eEeEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003255 581 SLKMGHPVIRV---EGS--NL-----LAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 581 ~Lp~G~tv~~~---vG~--~~-----~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
++|.|.|+.+. .|- .+ .+.+ +.| ||+ +||+++.|+.||.|||.+.
T Consensus 31 ~v~~g~TV~daI~~~gi~~~~peIdl~~~~-V~V--ng~--~v~~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 31 QVDEGITVQTAITQSGILSQFPEIDLSTNK-IGI--FSR--PIKLTDVLKEGDRIEIYRP 85 (97)
T ss_dssp EEETTCBHHHHHHHHTHHHHCTTCCTTTSE-EEE--EEC--SCCTTCBCCTTCEEEECCC
T ss_pred EcCCCCcHHHHHHHcCCCccCCcccccccE-EEE--cCE--ECCCCccCCCCCEEEEEec
Confidence 47888887654 221 11 0111 234 789 9999999999999999776
No 45
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=82.30 E-value=0.83 Score=50.71 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=40.3
Q ss_pred ceEEEEcCC---CCeEeCCCCCCHHHHHHHhC----CCCceEEEC-----------------C--EEeCCCccCCCCCEE
Q 003255 779 EVVIVCWPN---GEIMRLRSGSTAADAAMKVG----LEGKLVLVN-----------------G--QLVLPNTELKDGDIV 832 (836)
Q Consensus 779 ~~v~VftP~---G~v~~Lp~GsT~~DfAy~ih----v~~~~~~VN-----------------g--~lvpl~~~L~~GD~V 832 (836)
+-+.+||-. -+-..+++|+||-++|+.|| -|=..|-|= | |+.-=+|.++|||+|
T Consensus 306 ~l~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~ 385 (392)
T 1ni3_A 306 NLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIA 385 (392)
T ss_dssp TEEEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEE
T ss_pred CCEEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEE
Confidence 455677722 25678999999999999999 222233221 3 456678999999999
Q ss_pred EEe
Q 003255 833 EVR 835 (836)
Q Consensus 833 eI~ 835 (836)
.++
T Consensus 386 ~f~ 388 (392)
T 1ni3_A 386 HWK 388 (392)
T ss_dssp ECC
T ss_pred EEE
Confidence 875
No 46
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=78.18 E-value=0.79 Score=39.21 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=20.3
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003255 607 GGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
||+ +||.++.|+.||.|+|++.
T Consensus 52 Ng~--~v~~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 52 NGK--VVLEDDEVKDGDFVEVIPV 73 (77)
T ss_dssp TTE--EECSSSCCCSSCCCBCSCC
T ss_pred CCE--ECCCCCCcCCCCEEEEEcc
Confidence 899 9999999999999999864
No 47
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=78.12 E-value=1.3 Score=38.81 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.9
Q ss_pred eEEECCEEeCCCccCCCCCEEEEe
Q 003255 812 LVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 812 ~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
.++|||+.+..++.|+.||+|+|.
T Consensus 27 ~V~VNg~~~~~~~~v~~gd~I~v~ 50 (92)
T 2k6p_A 27 AVWLNGSCAKASKEVKAGDTISLH 50 (92)
T ss_dssp CCEETTEECCTTCBCCTTCEEEEC
T ss_pred cEEECCEEcCCCCCcCCCCEEEEE
Confidence 479999999999999999999884
No 48
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=77.76 E-value=3.1 Score=42.62 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 101 ~~~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
...++++..|+.+.+.+. .+..-+.|.+.|+.....+....|....-..+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~ 62 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKD---ASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVAD 62 (223)
T ss_dssp HHHHHHHHHHHHHHTTSS---SCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHhhcC---CCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 467899999999988653 23344899999988766554333433345668999999986
No 49
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=76.47 E-value=0.79 Score=39.32 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=30.9
Q ss_pred cccCCCceeee---cCCc--eeEeEEEEEccCCeeEEEecccccCCCCeEEEcCC
Q 003255 581 SLKMGHPVIRV---EGSN--LLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 581 ~Lp~G~tv~~~---vG~~--~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
++|.|.|+-+. .|-. -+...| ||+ +||.+..++ ||.|+|++.
T Consensus 16 ev~~g~Tv~dLL~~Lgl~~~~VvV~v-----NG~--~v~~d~~l~-GD~VeIv~~ 62 (74)
T 2l32_A 16 AVDDDGTYADLVRAVDLSPHEVTVLV-----DGR--PVPEDQSVE-VDRVKVLRL 62 (74)
T ss_dssp ECSTTCSHHHHHHTTCCCSSCCCEEC-----CCC--CCCTTSSSC-CCCEEECSS
T ss_pred EcCCCCcHHHHHHHcCCCcceEEEEE-----CCE--ECCHHHCCC-CCEEEEEEe
Confidence 68899887665 3422 223333 899 999999887 999999865
No 50
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=73.91 E-value=0.66 Score=51.67 Aligned_cols=25 Identities=4% Similarity=0.085 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhHhh
Q 003255 736 INNKVRLLRTMLRWEEQLRSEASLR 760 (836)
Q Consensus 736 ~~~k~~wlr~~lewq~e~~~~~~~~ 760 (836)
+.++++|||+|+|||++..|+.+|+
T Consensus 358 ~~~~~~wl~~ll~~~~~~~~~~ef~ 382 (393)
T 1vj7_A 358 QKVGMNWIKELVELQDASNGDAVDF 382 (393)
T ss_dssp -----CHHHHHHHC-----------
T ss_pred hHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 3568999999999999988888886
No 51
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=73.76 E-value=2.7 Score=42.38 Aligned_cols=101 Identities=14% Similarity=0.115 Sum_probs=52.2
Q ss_pred CcchhhHHHHHHHHHHHcC------CCCCCChhhHHHHhhhhcccccc--cC-C-H----HHHHHHhcHHHHHHHHHhhh
Q 003255 123 GDPYLTHCIHTGRILAMLI------PSSGKRAVDTVVAGILHDVVDDA--CE-S-L----GSIEEEFGDEVAKLVAGVSR 188 (836)
Q Consensus 123 GePYI~Hpl~VA~ILA~l~------~~~G~~D~dtIiAALLHDvVEDT--~~-T-~----eeI~~~FG~eVA~LV~gVTK 188 (836)
++.-..|.+.||.+..-+. ...+....-++.+|||||+.|-- ++ | . .++.+.+++.=..++..+..
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~p~k~~~~~~~~~~~~~E~~~~~~i~~ 108 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVD 108 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCCC---------CTHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCchHhhhchHHHHHhcccHHHHHHHHHH
Confidence 5777899999986643221 01123345677899999998832 21 1 1 12333333322222222211
Q ss_pred hhhhhHHHHHhhhhcccCCCcchhhhhHHHHHHHhh-cCCccEEEehhhhHHHhh
Q 003255 189 LSYINQLLRRHRRINVNQGTLGHEEANDLRVMLLGM-VDDPRVVLIKLADRLHNM 242 (836)
Q Consensus 189 l~~i~~~~r~~rr~~~~~~~~~~~qaEnlRKmLLAm-a~D~RVvLIKLADRLhNM 242 (836)
.+...+.+.++.+.... ...+-+.+||.||+|.-+
T Consensus 109 -------------------~Lp~~~~~e~~~l~~e~e~~t~ea~lvk~aD~l~a~ 144 (201)
T 2paq_A 109 -------------------MVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAY 144 (201)
T ss_dssp -------------------TSCGGGHHHHHHHHTTTSCCHHHHHHHHHHHHHHHH
T ss_pred -------------------hCCHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 12223344555555433 233467899999999765
No 52
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=72.60 E-value=2.9 Score=37.46 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.0
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
.+++|||+.+.-.++|++||+|.|
T Consensus 69 nGt~vng~~i~~~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 69 NGVIVEGRKIEHQSTLSANQVVAL 92 (106)
T ss_dssp SCCEETTEECSSEEECCTTCCEEE
T ss_pred CCeEECCEECCCCeECCCCCEEEE
Confidence 367999999988789999999986
No 53
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=70.82 E-value=2.3 Score=40.32 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.0
Q ss_pred CceEEECCEEeCCCccCCCCCEEEEe
Q 003255 810 GKLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 810 ~~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
...|+|||+.+..++.++.||+|+|.
T Consensus 33 ~G~V~VNG~~vk~s~~V~~GD~I~I~ 58 (133)
T 1dm9_A 33 GGKVHYNGQRSKPSKIVELNATLTLR 58 (133)
T ss_dssp TTCEEETTEECCTTCBCCTTCEEEEE
T ss_pred CCcEEECCEEcCCCCEeCCCCEEEEE
Confidence 34589999999999999999999884
No 54
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=70.28 E-value=2.4 Score=35.56 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=20.2
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003255 607 GGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
||. +||-+..|+.||.|+|++.
T Consensus 45 N~~--~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 45 NGQ--IVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp TTE--ECCTTSBCCTTCEEEEEEC
T ss_pred CCE--ECCCcccCCCCCEEEEEec
Confidence 899 9999999999999999754
No 55
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=70.17 E-value=2 Score=35.44 Aligned_cols=22 Identities=5% Similarity=-0.023 Sum_probs=19.4
Q ss_pred CCeeEEEec----ccccCCCCeEEEcCC
Q 003255 607 GGRELLVAV----SFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl----~~~L~~gd~Vei~ts 630 (836)
||+ +||- ++.|+.||.|+|++.
T Consensus 37 N~~--~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 37 NQQ--IVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp TTE--EECHHHHTTCCCCTTEEECEEES
T ss_pred CCE--ECCchhcCCcCCCCCCEEEEEee
Confidence 899 8997 789999999999754
No 56
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=68.95 E-value=6 Score=40.19 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHc-CCCCCCChhhHHHHhhhhccccc
Q 003255 101 DEQVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAML-IPSSGKRAVDTVVAGILHDVVDD 163 (836)
Q Consensus 101 ~~~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l-~~~~G~~D~dtIiAALLHDvVED 163 (836)
.+.+.++..+......++ ....-+.|.+.|+.....+ ....|.......+||||||+...
T Consensus 4 ~~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 4 RMKIKKAYEYMKSFHQHD---TTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHHTTTC---SSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 457788888888876532 1223479999998875333 21112223456699999999874
No 57
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=68.53 E-value=2.9 Score=39.24 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.0
Q ss_pred eEEECCEEeCCCccCCCCCEEEE
Q 003255 812 LVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 812 ~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
+++|||+.|.-.++|++||+|.|
T Consensus 91 gt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECCSCEEECTTCEEEE
T ss_pred CEEECCEEcCCcEECCCCCEEEE
Confidence 57999999987799999999986
No 58
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=67.80 E-value=3.4 Score=36.61 Aligned_cols=21 Identities=10% Similarity=0.191 Sum_probs=18.9
Q ss_pred CCeeEEEec----ccccCCCCeEEEcC
Q 003255 607 GGRELLVAV----SFGLAASEVVADRR 629 (836)
Q Consensus 607 ngr~~lVpl----~~~L~~gd~Vei~t 629 (836)
||+ +||- ++.|+.||.|+|++
T Consensus 58 Ng~--iV~~~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 58 NKE--IIGKERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp TTE--EECGGGTTTSBCCSSSEEEEEE
T ss_pred CCE--ECChhhcCCcCCCCCCEEEEEc
Confidence 899 9997 68999999999975
No 59
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=67.20 E-value=3.2 Score=38.24 Aligned_cols=24 Identities=46% Similarity=0.407 Sum_probs=21.5
Q ss_pred eEEECCEEe----CCCccCCCCCEEEEe
Q 003255 812 LVLVNGQLV----LPNTELKDGDIVEVR 835 (836)
Q Consensus 812 ~~~VNg~lv----pl~~~L~~GD~VeI~ 835 (836)
.+.|||+-+ -++|+|++||.|.++
T Consensus 69 lVLVNg~d~e~l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 69 LVLVNSCDAEVVGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp EEEESSSBHHHHTSSCCCCCSSCEEEEE
T ss_pred EEEECCeeeeccCCcccCCCCcCEEEEe
Confidence 589999988 589999999999886
No 60
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=65.17 E-value=2.4 Score=36.66 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=20.2
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003255 607 GGRELLVAVS----FGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~----~~L~~gd~Vei~ts 630 (836)
||. +||=+ +.|+.||.|||++.
T Consensus 40 Ng~--iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 40 NGE--VLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp TTE--ECCTTHHHHCEECSSBCEEECCC
T ss_pred CCE--ECChHHcCcccCCCCCEEEEEee
Confidence 899 99996 89999999999876
No 61
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=65.01 E-value=5.1 Score=40.20 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcc
Q 003255 103 QVQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDV 160 (836)
Q Consensus 103 ~l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDv 160 (836)
.+.++..+......+. .....+.|.+.|+.....+....|.......+||||||+
T Consensus 14 l~~~~~~~v~~~~~~~---~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDYD---DPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTCC---CTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 4667777887766532 233447899999876543321112223456699999999
No 62
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=64.15 E-value=4.3 Score=34.59 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=20.0
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003255 607 GGRELLVAVS----FGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~----~~L~~gd~Vei~ts 630 (836)
||. +||-+ +.|+.||.|||++.
T Consensus 36 Ng~--iVpr~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 36 NYD--VVPRGKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp SSS--EECHHHHTTCBCCTTCEEEEECC
T ss_pred CCE--ECChHHcCcccCCCCCEEEEEcc
Confidence 899 99986 79999999999876
No 63
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=62.63 E-value=4.1 Score=39.34 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.4
Q ss_pred eEEECCEEeCCCccCCCCCEEEE
Q 003255 812 LVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 812 ~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
+++|||+.|.-.++|++||+|.|
T Consensus 111 gt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECCSCEECCTTCEEEE
T ss_pred ceEECCEEcCCceECCCCCEEEE
Confidence 47999999987789999999976
No 64
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=60.64 E-value=5.5 Score=33.33 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=20.2
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003255 607 GGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
||+ +|+.++.|+.||.|+|+..
T Consensus 52 Ng~--~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 52 NEE--FVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp TTE--EECTTSEECTTCEEEEECS
T ss_pred CCE--ECCCCCCcCCCCEEEEECC
Confidence 899 9999999999999999754
No 65
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=58.30 E-value=3.5 Score=40.53 Aligned_cols=38 Identities=21% Similarity=0.172 Sum_probs=24.6
Q ss_pred chhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 125 PYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 125 PYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
..+.|.+.||.+...+....|.......+||||||+=.
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk 55 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAK 55 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 35789999987654332222333346678999999854
No 66
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=58.01 E-value=3.6 Score=40.55 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 126 YLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 126 YI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
.+.|.+.||.+...+....|.......+||||||+=.
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk 56 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAK 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 4789999987654332222333346678999999854
No 67
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=57.39 E-value=5.5 Score=36.86 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=20.9
Q ss_pred eEEECCEE----eCCCccCCCCCEEEEe
Q 003255 812 LVLVNGQL----VLPNTELKDGDIVEVR 835 (836)
Q Consensus 812 ~~~VNg~l----vpl~~~L~~GD~VeI~ 835 (836)
.+.|||+- --++|+|++||.|.|+
T Consensus 75 ~VlVN~~di~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 75 LVLINDADWELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp EEEESSSBHHHHCTTTCBCCSSEEEEEE
T ss_pred EEEECCeeeeccCCcCcCCCCCCEEEEe
Confidence 37999985 4699999999999986
No 68
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=56.62 E-value=13 Score=35.02 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.2
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLP--NTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl--~~~L~~GD~VeI 834 (836)
.+++|||+.+.. .++|++||+|.|
T Consensus 75 NGT~vNg~~l~~~~~~~L~~GD~I~l 100 (138)
T 2pie_A 75 NGVWLNRARLEPLRVYSIHQGDYIQL 100 (138)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCcEECCCCCEEEE
Confidence 468999999988 589999999987
No 69
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=55.86 E-value=4.3 Score=34.61 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEECCEEe-CCCccCCCCCEEEE
Q 003255 813 VLVNGQLV-LPNTELKDGDIVEV 834 (836)
Q Consensus 813 ~~VNg~lv-pl~~~L~~GD~VeI 834 (836)
|+|||+.+ ...++++.||+|+|
T Consensus 48 V~VNG~~v~~~~~~v~~gd~I~v 70 (79)
T 1p9k_A 48 VKVDGAVETRKRCKIVAGQTVSF 70 (79)
T ss_dssp HEETTBCCCCSSCCCCSSEEEEE
T ss_pred EEECCEEecCCCCCCCCCCEEEE
Confidence 79999987 78999999999987
No 70
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=55.71 E-value=5.9 Score=38.55 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=21.9
Q ss_pred ceEEECCEEe-CCCccCCCCCEEEEe
Q 003255 811 KLVLVNGQLV-LPNTELKDGDIVEVR 835 (836)
Q Consensus 811 ~~~~VNg~lv-pl~~~L~~GD~VeI~ 835 (836)
..+.|||+.| -+++.++.||+|+|.
T Consensus 76 G~V~VNG~~v~~ps~~V~~gD~I~V~ 101 (159)
T 1c05_A 76 GHILVDGSRVNIPSYRVKPGQTIAVR 101 (159)
T ss_dssp TCEEETTEECCCSSCBCCTTCEEEEC
T ss_pred CCEEECCEEeCcCCcEeCCCCEEEEe
Confidence 3489999999 599999999999984
No 71
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=55.52 E-value=4.1 Score=40.39 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhcccc
Q 003255 126 YLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVD 162 (836)
Q Consensus 126 YI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVE 162 (836)
...|.+.||.+...+....|.......+||||||+=.
T Consensus 27 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK 63 (196)
T 2ogi_A 27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAK 63 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCC
Confidence 5689999987654332222333345678999999854
No 72
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=54.93 E-value=10 Score=30.96 Aligned_cols=22 Identities=14% Similarity=-0.108 Sum_probs=19.6
Q ss_pred CCeeEEEecc----cccCCCCeEEEcCC
Q 003255 607 GGRELLVAVS----FGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~----~~L~~gd~Vei~ts 630 (836)
||+ +||-+ +.|+.||.|+|++.
T Consensus 35 N~~--~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 35 NEE--AFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTE--EEEGGGCCCCCCCTTCEEEEEEC
T ss_pred CCE--ECCccccCCcCCCCCCEEEEEee
Confidence 899 99977 99999999999864
No 73
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=53.85 E-value=6.4 Score=40.08 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.0
Q ss_pred ceEEECCEEeC-CCccCCCCCEEEEe
Q 003255 811 KLVLVNGQLVL-PNTELKDGDIVEVR 835 (836)
Q Consensus 811 ~~~~VNg~lvp-l~~~L~~GD~VeI~ 835 (836)
..|.|||+.|. +++.++.||+|+|.
T Consensus 124 G~V~VNG~~v~~ps~~V~~gD~I~V~ 149 (209)
T 2vqe_D 124 GHITVNGRRVDLPSYRVRPGDEIAVA 149 (209)
T ss_dssp TCEEETTEECCCTTCBCCTTCEEEEC
T ss_pred CCEEECCEEeCcCCcCcCCCCEEEEc
Confidence 34899999994 99999999999984
No 74
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=53.79 E-value=7.9 Score=36.31 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.6
Q ss_pred ceEEECCEEeCCCc--cCCCCCEEEE
Q 003255 811 KLVLVNGQLVLPNT--ELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl~~--~L~~GD~VeI 834 (836)
.+.+|||+.++... +|++||+|.+
T Consensus 94 NGT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 94 HGTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEE
T ss_pred CceEECCEECCCCceeECCCCCEEEE
Confidence 46899999998874 7999999976
No 75
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=53.68 E-value=5.4 Score=36.61 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.0
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
.+++|||+.+.-.++|++||+|.|
T Consensus 80 ngt~vNg~~i~~~~~L~~GD~I~i 103 (120)
T 1wln_A 80 AETYVDGQRISETTMLQSGMRLQF 103 (120)
T ss_dssp SCEEETSCBCSSCEEECTTCEEEE
T ss_pred CCEEECCEEcCCCEECCCCCEEEE
Confidence 457999999997779999999976
No 76
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=53.60 E-value=7.2 Score=38.87 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEECCEEeCCCccCCCCCEEEE
Q 003255 813 VLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 813 ~~VNg~lvpl~~~L~~GD~VeI 834 (836)
++|||+.|.-.++|++||+|-+
T Consensus 142 t~VNG~~I~~~~~L~~GDrI~l 163 (184)
T 4egx_A 142 TYVNGKKVTEPSILRSGNRIIM 163 (184)
T ss_dssp EEETTEECCSCEECCTTCEEEE
T ss_pred EEEcCEEccccEEcCCCCEEEE
Confidence 6899999998999999999965
No 77
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=53.44 E-value=5.9 Score=34.99 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.3
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
.+++|||+.++ .++|++||++.|
T Consensus 65 nGt~vng~~i~-~~~L~~gd~i~i 87 (100)
T 3po8_A 65 NGTTVNNAPVQ-EWQLADGDVIRL 87 (100)
T ss_dssp SCCEETTEECS-EEECCTTCEEEE
T ss_pred CCEEECCEECc-eEECCCCCEEEE
Confidence 35799999998 799999999986
No 78
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=50.60 E-value=12 Score=35.50 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.9
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLP--NTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl--~~~L~~GD~VeI 834 (836)
.+++|||+.++. .++|++||+|.|
T Consensus 83 NGT~vNg~~i~~~~~~~L~~GD~I~i 108 (145)
T 2csw_A 83 NGVWLNRARLEPLRVYSIHQGDYIQL 108 (145)
T ss_dssp SCEEESSCBCCBTCCEECCSSCCEEE
T ss_pred CCeEECCEECCCCccEECCCCCEEEE
Confidence 467999999887 589999999987
No 79
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=49.28 E-value=23 Score=35.83 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhhc--CCcccc-------CcchhhHHHHHHHHHHHcCCC--CCCChhhHHHHhhhhccccc
Q 003255 101 DEQVQKAIAFAKRAHH--GQFRKT-------GDPYLTHCIHTGRILAMLIPS--SGKRAVDTVVAGILHDVVDD 163 (836)
Q Consensus 101 ~~~l~~A~~fA~~aH~--GQ~Rks-------GePYI~Hpl~VA~ILA~l~~~--~G~~D~dtIiAALLHDvVED 163 (836)
..++.+-+.|...++. .+.|.+ .|.--.|...||.+..-+... .+..-..++..||+||+.|-
T Consensus 7 ~~~l~~~~~Fl~~~~~LK~i~R~~~~~~~~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E~ 80 (200)
T 3kh1_A 7 ESRLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEI 80 (200)
T ss_dssp GHHHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHH
T ss_pred hHHHHHHHHHHHHHHhhCcCCcCCCcCCCCCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHHH
Confidence 3567888888877763 233422 245578999998764322211 12223477889999999994
No 80
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=49.15 E-value=7.3 Score=36.54 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=20.4
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
.+++|||+.+.- ++|++||+|.|
T Consensus 82 NGT~vNg~~i~~-~~L~~GD~I~i 104 (131)
T 3hx1_A 82 NGLMINGKKVQE-HIIQTGDEIVM 104 (131)
T ss_dssp SCEEETTEEESE-EECCTTCEEEC
T ss_pred CceEECCEEeEe-EECCCCCEEEE
Confidence 478999999985 99999999976
No 81
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=48.20 E-value=14 Score=38.61 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHHcCCCCCCCh-hhHHHHhhhhcc
Q 003255 104 VQKAIAFAKRAHHGQFRKTGDPYLTHCIHTGRILAMLIPSSGKRA-VDTVVAGILHDV 160 (836)
Q Consensus 104 l~~A~~fA~~aH~GQ~RksGePYI~Hpl~VA~ILA~l~~~~G~~D-~dtIiAALLHDv 160 (836)
|.+|++.--......-.....|=+.|.+.+|....+-+. | .-.++||||||+
T Consensus 38 i~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~-----d~dw~~laaLlHDL 90 (250)
T 2ibn_A 38 VMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHP-----DKDWFHLVGLLHDL 90 (250)
T ss_dssp HHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHST-----TCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCc-----ChhHHHHHHHHhcc
Confidence 567766655554433222345668999999988766554 3 334499999997
No 82
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=46.81 E-value=8.5 Score=36.75 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.8
Q ss_pred ceEEECCEEeCC-CccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLP-NTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl-~~~L~~GD~VeI 834 (836)
.+++|||+.+.- .++|++||+|.|
T Consensus 87 NGT~VNg~~i~~~~~~L~~GD~I~l 111 (151)
T 2jqj_A 87 NGTFINGNRLVKKDYILKNGDRIVF 111 (151)
T ss_dssp SCEEETTEECCSSCEEECSSEEEEE
T ss_pred CCeEECCEEcCCCceECCCCCEEEE
Confidence 457999999987 589999999986
No 83
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=46.40 E-value=17 Score=36.99 Aligned_cols=37 Identities=22% Similarity=0.378 Sum_probs=28.1
Q ss_pred cchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003255 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (836)
Q Consensus 124 ePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVED 163 (836)
+.--.|.+.||.+...+.. ..|...+.+||+||+.|-
T Consensus 54 eSVAeHS~~va~ia~~l~~---~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCP---GATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCT---TCCHHHHHHHHTTTTTHH
T ss_pred ccHHHHHHHHHHHHHHHCC---CCCHHHHHHHHhcCchHh
Confidence 4557899999987655532 235678899999999984
No 84
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=46.06 E-value=14 Score=31.04 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.9
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003255 607 GGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
||+ .++.++.|+.||.|+|+..
T Consensus 56 N~~--~v~~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 56 NQT--LVSFDHPLTDGDEVAFFPP 77 (81)
T ss_dssp TTE--ECCTTCBCCTTCEEEEECC
T ss_pred CCE--ECCCCCCCCCCCEEEEeCC
Confidence 899 8999999999999999753
No 85
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=45.69 E-value=9.6 Score=34.60 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
.+++|||+.+. .++|++||+|.|
T Consensus 73 nGt~vng~~i~-~~~L~~gd~i~i 95 (115)
T 2xt9_B 73 NGTYVNREPVD-SAVLANGDEVQI 95 (115)
T ss_dssp SCEEETTEECS-EEEECTTCEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 45799999998 789999999986
No 86
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=42.69 E-value=15 Score=37.92 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003255 127 LTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (836)
Q Consensus 127 I~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVED 163 (836)
+.|.+.|+.....+....|.......+||||||+...
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 7899999988766654334333456799999999764
No 87
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=42.38 E-value=11 Score=38.24 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=22.6
Q ss_pred CCceEEECCEEe-CCCccCCCCCEEEEe
Q 003255 809 EGKLVLVNGQLV-LPNTELKDGDIVEVR 835 (836)
Q Consensus 809 ~~~~~~VNg~lv-pl~~~L~~GD~VeI~ 835 (836)
.+..|.|||+.| -+++.++.||+|+|.
T Consensus 112 ~~G~V~VNG~~V~~pS~~V~~gD~I~V~ 139 (201)
T 3bbn_D 112 NHRHILVNGRIVDIPSYRCKPQDTIMAR 139 (201)
T ss_dssp HTTCEEETTEECCCTTCBCCTTEEEEEC
T ss_pred hCCcEEeCCEEEeecceecCCCCEEEEc
Confidence 334579999998 489999999999984
No 88
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=42.35 E-value=11 Score=35.83 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.7
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLP--NTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl--~~~L~~GD~VeI 834 (836)
.+++|||+.++. .++|++||+|.|
T Consensus 103 NGT~VNg~~i~~~~~~~L~~GD~I~l 128 (149)
T 1gxc_A 103 NGTFVNTELVGKGKRRPLNNNSEIAL 128 (149)
T ss_dssp SCEEETTEECCTTCEEECCTTEEEEE
T ss_pred CCeEECCEECCCCCeEECCCCCEEEE
Confidence 457999999985 689999999986
No 89
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=42.09 E-value=12 Score=36.84 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=25.0
Q ss_pred cchhhHHHHHHHHH---HHcC--CCCCCChhh-HHHHhhhhccccc
Q 003255 124 DPYLTHCIHTGRIL---AMLI--PSSGKRAVD-TVVAGILHDVVDD 163 (836)
Q Consensus 124 ePYI~Hpl~VA~IL---A~l~--~~~G~~D~d-tIiAALLHDvVED 163 (836)
+.-..|...||.+. +... ...|. |.. .+.+|||||+.|.
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~-d~~~v~~~aLlHD~~E~ 75 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRI-DVEKALKMAIVHDLAEA 75 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhchHHH
Confidence 45678999988765 3320 00122 444 6789999999874
No 90
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=41.95 E-value=16 Score=32.29 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=20.0
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003255 607 GGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
||+ .|+.++.|+.||.|+|+..
T Consensus 73 Ng~--~v~~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 73 NGR--YVSWDEELKDGDVVGVFPP 94 (98)
T ss_dssp TTB--CCCTTCBCCTTCEEEEESC
T ss_pred CCE--ECCCCCCCCCCCEEEEECC
Confidence 899 8999999999999999753
No 91
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=40.84 E-value=11 Score=41.69 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=47.4
Q ss_pred HHHhccccccccccCCCCccCCCCceeeeceeccCCCCCCH--HHHHHHHHHHHHhhcCCcc--ccCc---chhhHHHHH
Q 003255 61 AIASGACLSTKVDFLWPKLEEQPGTFIVDGVDVTGYPIFND--EQVQKAIAFAKRAHHGQFR--KTGD---PYLTHCIHT 133 (836)
Q Consensus 61 ~~~~~~~~~~~~df~~~~~~~~~~~~~~~g~~~~~y~~~~~--~~l~~A~~fA~~aH~GQ~R--ksGe---PYI~Hpl~V 133 (836)
.+|.-||.+.+..-.+..-++.+ .-..|+. .+|-..-.|=+-.+.-|.- ..|+ .-++|.++|
T Consensus 15 ~l~~~a~~~~~~~~R~~~e~~~~-----------~R~~FqrD~~rII~S~~FrRL~~ktQv~~~~~~d~~~tRl~HSl~V 83 (376)
T 2dqb_A 15 RLAPYAQKARDTRGRAHPEPESL-----------YRTPYQKDRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEV 83 (376)
T ss_dssp HSCTTSCCGGGCCCCSSCCCCCS-----------SCCHHHHHHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHH
T ss_pred hcChhhcCchhhcCccCCCCCCC-----------CCCcHHHHHHHHHCCHHHHHHcCCCccccCCCCcccccHHHHHHHH
Confidence 36778898876543332221111 0113333 3444444555555666652 1233 336999999
Q ss_pred HHHHHHcCCCCCCChhhHHHHhhhhccc
Q 003255 134 GRILAMLIPSSGKRAVDTVVAGILHDVV 161 (836)
Q Consensus 134 A~ILA~l~~~~G~~D~dtIiAALLHDvV 161 (836)
|.+...+...-|....-+-+||||||+=
T Consensus 84 a~iar~ia~~l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 84 AQVSRSIARALGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 9875332221122233456899999985
No 92
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=40.64 E-value=9 Score=34.66 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.9
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEEe
Q 003255 811 KLVLVNGQLVLP--NTELKDGDIVEVR 835 (836)
Q Consensus 811 ~~~~VNg~lvpl--~~~L~~GD~VeI~ 835 (836)
.+++|||+.+.. .++|++||+|.|-
T Consensus 68 NGt~vng~~l~~~~~~~L~~GD~i~~G 94 (116)
T 1lgp_A 68 SGTVINKLKVVKKQTCPLQTGDVIYLV 94 (116)
T ss_dssp SCCCCCCCCCCCSSCCCCCTTCEEEEE
T ss_pred CCcEECCEEcCCCCcEECCCCCEEEEe
Confidence 457999998886 5899999999873
No 93
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=40.48 E-value=11 Score=36.06 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.5
Q ss_pred eEEECCEEeCCCccCCCCCEEEE
Q 003255 812 LVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 812 ~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
+++|||+.+. .+.|++||+|.|
T Consensus 109 GT~VNg~~i~-~~~L~~GD~I~i 130 (143)
T 2kb3_A 109 GTYVNREPRN-AQVMQTGDEIQI 130 (143)
T ss_dssp CCEETTEECS-EEECCTTEEEEE
T ss_pred CeEECCEEcc-eEECCCCCEEEE
Confidence 4699999998 789999999986
No 94
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=40.11 E-value=14 Score=34.11 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.9
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLP--NTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl--~~~L~~GD~VeI 834 (836)
.+++|||+.+.. .++|++||+|.|
T Consensus 79 NGT~vNg~~l~~~~~~~L~~Gd~I~l 104 (127)
T 1g6g_A 79 NGTWLNGQKVEKNSNQLLSQGDEITV 104 (127)
T ss_dssp SCCEETTEECCTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCeEEcCCCCEEEE
Confidence 567999999887 589999999987
No 95
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=39.70 E-value=11 Score=34.79 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=20.7
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
.+++|||+.+.-.++|++||+|.|
T Consensus 75 nGt~vNg~~i~~~~~L~~Gd~i~i 98 (128)
T 1r21_A 75 NPTQVNGSVIDEPVRLKHGDVITI 98 (128)
T ss_dssp SCCEETTEECSSCEECCTTEEEEC
T ss_pred CCEEECCEECCCcEEcCCCCEEEE
Confidence 457999999986689999999976
No 96
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=39.46 E-value=32 Score=34.94 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=27.2
Q ss_pred cchhhHHHHHHHHHHHcCCCCCCChhhHHHHhhhhccccc
Q 003255 124 DPYLTHCIHTGRILAMLIPSSGKRAVDTVVAGILHDVVDD 163 (836)
Q Consensus 124 ePYI~Hpl~VA~ILA~l~~~~G~~D~dtIiAALLHDvVED 163 (836)
|.--.|...||.+..-+. ..+..-...+..||+||+.|-
T Consensus 44 ESVAEHS~~vAliA~~l~-~~~vD~~r~~~maL~HDl~E~ 82 (204)
T 4dmb_A 44 ESVSDHMYRMAVMAMVIK-DDRLNKDRCVRLALVHDMAEC 82 (204)
T ss_dssp CBHHHHHHHHHHHHHHSC-CTTSCHHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHHHHHHHHHc-cccCCHHHHHHHHHhcchHHh
Confidence 556789999997654443 222222467889999999994
No 97
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=39.26 E-value=9.1 Score=34.79 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.3
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLP--NTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl--~~~L~~GD~VeI 834 (836)
.+++|||+.+.. .++|++||+|.|
T Consensus 76 nGT~vng~~l~~~~~~~L~~gd~i~l 101 (118)
T 1uht_A 76 NGTLLNSNALDPETSVNLGDGDVIKL 101 (118)
T ss_dssp SCCEESSSBCCTTCEEECCTTEEEEE
T ss_pred CCeEECCEECCCCCeEEcCCCCEEEE
Confidence 357999998876 588999999986
No 98
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=38.56 E-value=14 Score=33.61 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEECCEEeCCC--ccCCCCCEEEEe
Q 003255 813 VLVNGQLVLPN--TELKDGDIVEVR 835 (836)
Q Consensus 813 ~~VNg~lvpl~--~~L~~GD~VeI~ 835 (836)
..|||+.+.-+ ++|++||+++++
T Consensus 66 ~~vng~~l~k~~~~~L~~GD~l~Ll 90 (102)
T 3kt9_A 66 TSIDSVVIGKDQEVKLQPGQVLHMV 90 (102)
T ss_dssp CEETTEECCBTCEEEECTTCCEEEE
T ss_pred CeECCEEcCCCCeEEeCCCCEEEEc
Confidence 47899988887 999999999986
No 99
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=38.45 E-value=22 Score=30.49 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=20.0
Q ss_pred CCeeEEEecccccCCCCeEEEcCC
Q 003255 607 GGRELLVAVSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVpl~~~L~~gd~Vei~ts 630 (836)
||+ .|+.++.|+.||.|+|+..
T Consensus 64 N~~--~v~~~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 64 NGE--AAALGEATAAGDELALFPP 85 (89)
T ss_dssp TTE--ECCTTSBCCTTCEEEEECC
T ss_pred CCE--ECCCCcccCCCCEEEEECC
Confidence 899 8999999999999999753
No 100
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=37.63 E-value=12 Score=36.44 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred ceEEECCEEeCCC--ccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLPN--TELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl~--~~L~~GD~VeI 834 (836)
.+.+|||+.++.. ++|++||+|.|
T Consensus 117 NGT~VNg~ri~~~~~~~L~~GD~I~~ 142 (158)
T 3els_A 117 NGTCLNNVVIPGARYIELRSGDVLTL 142 (158)
T ss_dssp SCCEETTEECCTTCCEECCTTEEEES
T ss_pred CccEECCEEcCCCceEEcCCCCEEEE
Confidence 4679999999984 78999999975
No 101
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=37.49 E-value=10 Score=36.64 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.5
Q ss_pred CceEEECCEEeCC--CccCCCCCEEEE
Q 003255 810 GKLVLVNGQLVLP--NTELKDGDIVEV 834 (836)
Q Consensus 810 ~~~~~VNg~lvpl--~~~L~~GD~VeI 834 (836)
..+++|||+.+.- .++|++||+|.|
T Consensus 82 tNGT~VNg~ri~~~~~~~L~~GD~I~l 108 (158)
T 1dmz_A 82 TNVSYLNNNRMIQGTKFLLQDGDEIKI 108 (158)
T ss_dssp TTCCEETTEECCSSEEEECCSSCCEES
T ss_pred cCCeEECCEEcCCCceEEcCCCCEEEE
Confidence 3567999999988 589999999987
No 102
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=37.06 E-value=13 Score=35.00 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.6
Q ss_pred ceEEECCEEeCC----------CccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLP----------NTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl----------~~~L~~GD~VeI 834 (836)
.+++|||+.+.. .++|++||+|.|
T Consensus 76 NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 76 NGTLVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SCCEETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred CCEEECCEECcCcccccccCCceEECCCCCEEEE
Confidence 457999999984 789999999976
No 103
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=36.92 E-value=18 Score=35.07 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=21.1
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLP--NTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl--~~~L~~GD~VeI 834 (836)
.+++|||+.+.. .++|++||+|.|
T Consensus 107 NGT~vNg~~i~~~~~~~L~~GD~I~i 132 (164)
T 1g3g_A 107 NGTWLNGQKVEKNSNQLLSQGDEITV 132 (164)
T ss_dssp SCEEETTEEECTTEEEECCTTCEEEE
T ss_pred CCeEECCEEcCCCCceEcCCCCEEEE
Confidence 567999999988 489999999987
No 104
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=34.59 E-value=5.1 Score=40.87 Aligned_cols=26 Identities=31% Similarity=0.662 Sum_probs=22.0
Q ss_pred CceEEECCEEe-CCCccCCCCCEEEEe
Q 003255 810 GKLVLVNGQLV-LPNTELKDGDIVEVR 835 (836)
Q Consensus 810 ~~~~~VNg~lv-pl~~~L~~GD~VeI~ 835 (836)
+..|.|||+.| -+++.++.||+|+|.
T Consensus 119 ~G~V~VNG~~V~~ps~~Vk~GD~I~V~ 145 (205)
T 3r8n_D 119 HKAIMVNGRVVNIASYQVSPNDVVSIR 145 (205)
T ss_dssp TTCCBSSSSBCCCTTCBCCTTBCCBCC
T ss_pred CCCEEECCEEEccCCcCcCCCCEEEec
Confidence 34579999999 589999999999874
No 105
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=33.87 E-value=17 Score=35.36 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.0
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
.+++|||+.+. .++|++||+|.|
T Consensus 127 NGT~VNG~~i~-~~~L~~GD~I~l 149 (157)
T 3oun_A 127 NGTTVNNAPVQ-EWQLADGDVIRL 149 (157)
T ss_dssp SCCEETTEECS-EEECCTTCEEEE
T ss_pred CCeEECCEECc-eEECCCCCEEEE
Confidence 35799999997 689999999986
No 106
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=33.86 E-value=12 Score=37.05 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred ceEEECCEEeCC--CccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLP--NTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl--~~~L~~GD~VeI 834 (836)
.+++|||+.+.- .++|++||+|.|
T Consensus 107 NGT~VNg~ri~~~~~~~L~~GD~I~l 132 (182)
T 1qu5_A 107 NVSYLNNNRMIQGTKFLLQDGDEIKI 132 (182)
T ss_dssp SCCEETTEECCSSEEEECCTTBCCEE
T ss_pred CCeEECCEEcCCCcceEcCCCCEEEE
Confidence 567999999988 589999999987
No 107
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=32.70 E-value=17 Score=35.49 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.8
Q ss_pred ceEEECCEEeCCCccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLPNTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl~~~L~~GD~VeI 834 (836)
.+++|||+.+. ...|++||+|.|
T Consensus 117 NGT~VNg~~i~-~~~L~~GD~I~i 139 (162)
T 2kfu_A 117 NGTYVNREPVD-SAVLANGDEVQI 139 (162)
T ss_dssp SCEEETTBCCS-EEECCSSCEEEE
T ss_pred CCeEECCEEcc-eEECCCCCEEEE
Confidence 34799999988 689999999986
No 108
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=32.18 E-value=17 Score=37.14 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred ceEEECCEEeCCC--ccCCCCCEEEE
Q 003255 811 KLVLVNGQLVLPN--TELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvpl~--~~L~~GD~VeI 834 (836)
.+.+|||+.++.. ++|++||+|.+
T Consensus 164 NGTfVNG~rI~~~~~~~L~~GD~I~f 189 (205)
T 3elv_A 164 NGTCLNNVVIPGARYIELRSGDVLTL 189 (205)
T ss_dssp SCCEETTEECCBTSCEECCTTCEEES
T ss_pred CCCeECCEECCCCceeECCCCCEEEE
Confidence 4679999999877 58999999975
No 109
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=31.59 E-value=16 Score=40.17 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHHcCCCCCCCh-hhHHHHhhhhccccc
Q 003255 125 PYLTHCIHTGRILAMLIPSSGKRA-VDTVVAGILHDVVDD 163 (836)
Q Consensus 125 PYI~Hpl~VA~ILA~l~~~~G~~D-~dtIiAALLHDvVED 163 (836)
..+.|.+.||.+...+....|... ....+||||||+-.-
T Consensus 50 ~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~ 89 (371)
T 2hek_A 50 TRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHP 89 (371)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCC
T ss_pred ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Confidence 458999999876433221112222 356799999998653
No 110
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=31.41 E-value=9.4 Score=33.47 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=17.5
Q ss_pred CceEEECCEEeCCCccCCCCCEEEEe
Q 003255 810 GKLVLVNGQLVLPNTELKDGDIVEVR 835 (836)
Q Consensus 810 ~~~~~VNg~lvpl~~~L~~GD~VeI~ 835 (836)
||.+...|--..-++++.|||++||+
T Consensus 56 NK~~~L~~~~~L~d~~ItnGD~Leil 81 (81)
T 2bps_A 56 NKDKVFSGECKLSDCGITNGDRLEIL 81 (81)
T ss_dssp GGTEEEETTSBTGGGTCCTTCEEEEC
T ss_pred cCCEEEcCCCEEeeCCcCCCCEEEEC
Confidence 34333334344458999999999985
No 111
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=29.01 E-value=29 Score=29.51 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=19.2
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003255 607 GGRELLVA----VSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVp----l~~~L~~gd~Vei~ts 630 (836)
||+ .++ .++.|+.||.|+|+..
T Consensus 61 N~~--~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 61 NGN--NITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp SSS--BGGGTCSSSCBCCTTCEEEEECC
T ss_pred CCE--EccccCCCCcCCCCCCEEEEeCC
Confidence 889 787 7999999999999753
No 112
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=28.97 E-value=43 Score=30.44 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=32.1
Q ss_pred EeCCCCCCHHHHHHHhC---------------CCC-------c---eEEECCEEeCC---CccCCCCCEEEEe
Q 003255 791 MRLRSGSTAADAAMKVG---------------LEG-------K---LVLVNGQLVLP---NTELKDGDIVEVR 835 (836)
Q Consensus 791 ~~Lp~GsT~~DfAy~ih---------------v~~-------~---~~~VNg~lvpl---~~~L~~GD~VeI~ 835 (836)
+. |.|+|..|+--.-. |.+ + +..|||.++.- +++|+|||.|++.
T Consensus 25 v~-t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~~Ga~~~~v~dGD~i~~~ 96 (101)
T 3u7z_A 25 FD-TDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVNTSADQTPVSDGDAFELT 96 (101)
T ss_dssp EE-ECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECCSCGGGCBCCTTCEEEEE
T ss_pred Ec-CCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhhhchhheEecCCCEEEEE
Confidence 55 88888888765431 112 1 14899999886 7899999999975
No 113
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=28.68 E-value=22 Score=38.06 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=23.6
Q ss_pred cCcchh-hHHHHHHHHHHHcCCCCCCChhh----HHHHhhhhccc
Q 003255 122 TGDPYL-THCIHTGRILAMLIPSSGKRAVD----TVVAGILHDVV 161 (836)
Q Consensus 122 sGePYI-~Hpl~VA~ILA~l~~~~G~~D~d----tIiAALLHDvV 161 (836)
...+|. .|.+.||.+...+...-|....+ ..+||||||+=
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 445665 69999987653332211222233 44699999983
No 114
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=28.62 E-value=31 Score=32.29 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=20.1
Q ss_pred ceEEECCEEeC--CCccCCCCCEEEE
Q 003255 811 KLVLVNGQLVL--PNTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lvp--l~~~L~~GD~VeI 834 (836)
.+++|||+.+. -.++|++||+|.|
T Consensus 100 NGT~vNg~~l~~~~~~~L~~gd~i~~ 125 (140)
T 2jpe_A 100 HGTFLGHIRLEPHKPQQIPIDSTVSF 125 (140)
T ss_dssp SCEESSSCEECSSSCCEECTTCCBBC
T ss_pred CCeEECCEECCCCccEECCCCCEEEE
Confidence 46799999988 4688999999865
No 115
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=27.16 E-value=43 Score=32.53 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=31.6
Q ss_pred EEEEcCCCCeEeC--CCCCCHHHHHHHh-C-----CCCc------e-EEECCEEeC
Q 003255 781 VIVCWPNGEIMRL--RSGSTAADAAMKV-G-----LEGK------L-VLVNGQLVL 821 (836)
Q Consensus 781 v~VftP~G~v~~L--p~GsT~~DfAy~i-h-----v~~~------~-~~VNg~lvp 821 (836)
.+-|+-||+-+++ +.|.|.+|+.... | .+|. | |.|||+.|.
T Consensus 4 ~i~~~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG~~v~ 59 (161)
T 1rm6_C 4 ILRLTLNGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRL 59 (161)
T ss_dssp EEEEEETTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETTEEEE
T ss_pred eEEEEECCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECCcEEe
Confidence 3579999999887 7899999999986 5 2221 1 799999764
No 116
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=26.41 E-value=18 Score=42.44 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=38.1
Q ss_pred cccCCCceeee---c----CCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003255 581 SLKMGHPVIRV---E----GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 633 (836)
Q Consensus 581 ~Lp~G~tv~~~---v----G~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~~p 633 (836)
..|.|.|+.++ + ...+++|+| ||+ ++.|+++|..+..|+++|...+
T Consensus 15 ~~~~g~t~~~ia~~~~~~~~~~~v~~~v-----ng~--~~dl~~~l~~d~~v~~~~~~~~ 67 (645)
T 1nyr_A 15 AFDKGTTTEDIAQSISPGLRKKAVAGKF-----NGQ--LVDLTKPLETDGSIEIVTPGSE 67 (645)
T ss_dssp BCCTTCCHHHHHHTTCHHHHHHCCEEEE-----TTE--EECTTSCCCSCBCCCEECTTSH
T ss_pred EecCCCCHHHHHHHhhhhcccCeEEEEE-----CCE--EEeCCcccCCCCeEEEeeccch
Confidence 35788887766 2 246899999 999 9999999999999999988754
No 117
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=25.79 E-value=2e+02 Score=22.74 Aligned_cols=56 Identities=9% Similarity=0.202 Sum_probs=40.2
Q ss_pred eEEEEcCCCCe--EeCCCCCCHHHHHHHhC----CCCc--eEEECCEEeCC-----CccCCCCCEEEEe
Q 003255 780 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLP-----NTELKDGDIVEVR 835 (836)
Q Consensus 780 ~v~VftP~G~v--~~Lp~GsT~~DfAy~ih----v~~~--~~~VNg~lvpl-----~~~L~~GD~VeI~ 835 (836)
.|+|=+++|+. ++++...|..|+--.|. +... -...+|+...- ++.+++|+.|.+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLV 70 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 46788888884 67889999999888874 4332 24668887643 3556799998764
No 118
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=25.53 E-value=15 Score=39.36 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=0.0
Q ss_pred CCCceEEECCEE-eCCCccCCCCCEEEEe
Q 003255 808 LEGKLVLVNGQL-VLPNTELKDGDIVEVR 835 (836)
Q Consensus 808 v~~~~~~VNg~l-vpl~~~L~~GD~VeI~ 835 (836)
+....|+|||+. +..+++++.||+|+|.
T Consensus 39 I~~G~V~VNG~~v~~~~~~v~~gD~I~v~ 67 (325)
T 1v9f_A 39 ILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67 (325)
T ss_dssp -----------------------------
T ss_pred HHCCCEEECCEEccCCCCEeCCCCEEEEe
Confidence 344458999998 8899999999999874
No 119
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=24.49 E-value=28 Score=37.89 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=13.0
Q ss_pred hhhhhhHHHHHHHHHHHh
Q 003255 390 IALTSLVACEEALEKELL 407 (836)
Q Consensus 390 ~~l~~l~~~~~~L~~~~~ 407 (836)
.||+....|++.|.+|+.
T Consensus 223 ~Al~~y~~~r~~L~~eLG 240 (388)
T 2ff4_A 223 DALGAYRRVKTTLADDLG 240 (388)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 466777778888888753
No 120
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=24.49 E-value=19 Score=42.23 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=37.5
Q ss_pred ccCCCceeee---c----CCceeEeEEEEEccCCeeEEEecccccCCCCeEEEcCCCCc
Q 003255 582 LKMGHPVIRV---E----GSNLLAAVIIRVEKGGRELLVAVSFGLAASEVVADRRPSFQ 633 (836)
Q Consensus 582 Lp~G~tv~~~---v----G~~~~gAkV~~v~~ngr~~lVpl~~~L~~gd~Vei~ts~~p 633 (836)
.+.|.|+.++ + ...+++|+| ||+ ++.|+++|..+..|+++|...+
T Consensus 14 ~~~~~t~~~~a~~i~~~~~~~~~~~~v-----ng~--~~dl~~~l~~d~~~~~~~~~~~ 65 (642)
T 1qf6_A 14 YDHAVSPMDVALDIGPGLAKACIAGRV-----NGE--LVDACDLIENDAQLSIITAKDE 65 (642)
T ss_dssp CSSCBCHHHHHHHHCHHHHHHCSEEEE-----TTE--EEETTSCBCSCEECCEECTTSH
T ss_pred ecCCCCHHHHHHHhchhhhhheEEEEE-----CCE--EeccccccCCCceEEEeecCcH
Confidence 5777787765 3 356899999 999 9999999999999999998754
No 121
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=23.48 E-value=52 Score=27.37 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=18.7
Q ss_pred CCeeEE-EecccccCCCCeEEEcCC
Q 003255 607 GGRELL-VAVSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~l-Vpl~~~L~~gd~Vei~ts 630 (836)
||+ . ...++.|+.||.|+|+..
T Consensus 48 N~~--~v~~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 48 NDH--LIDNLNTPLKDGDVISLLPP 70 (74)
T ss_dssp SSS--EECCTTCCCCTTCEEEEECC
T ss_pred CCE--EcCCCCcCCCCCCEEEEECC
Confidence 888 5 678999999999999753
No 122
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=23.27 E-value=97 Score=30.56 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=33.9
Q ss_pred HHHHHHHHhh--cCCcc----ccC----cchhhHHHHHHHH---HHHcCCCCCCCh---hhHHHHhhhhccccc
Q 003255 106 KAIAFAKRAH--HGQFR----KTG----DPYLTHCIHTGRI---LAMLIPSSGKRA---VDTVVAGILHDVVDD 163 (836)
Q Consensus 106 ~A~~fA~~aH--~GQ~R----ksG----ePYI~Hpl~VA~I---LA~l~~~~G~~D---~dtIiAALLHDvVED 163 (836)
.-+.|...+. +.+.| ..| |.--.|...||.+ |+... |..- ...+..||+||+.|-
T Consensus 9 ~~~~Fl~~~~~LK~i~R~gw~~~gv~~~EsVAeHS~~vA~iA~~la~~~---~vd~~~~~r~~~maL~HDl~E~ 79 (173)
T 1ynb_A 9 DVVKFIHEVGSLKLTPRSGWLKLGIRLPESVAEHNFRAAIIAFILALKS---GESVEKACKAATAALFHDLHEA 79 (173)
T ss_dssp HHHHHHHHHHGGGGSBCGGGGGGTCSSCCBHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHhccCccCCcccCCCCCCCcHHHHHHHHHHHHHHHhhhc---CCChhHHHHHHHHHHHcchHHh
Confidence 3344444443 34556 345 4557899998877 55542 3323 356788999999883
No 123
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=22.17 E-value=59 Score=28.03 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.1
Q ss_pred CCeeEEEe----cccccCCCCeEEEcCC
Q 003255 607 GGRELLVA----VSFGLAASEVVADRRP 630 (836)
Q Consensus 607 ngr~~lVp----l~~~L~~gd~Vei~ts 630 (836)
||+ .++ +++.|+.||.|.|+..
T Consensus 64 N~~--~v~~~~~~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 64 NDE--DVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp TTE--EGGGTTGGGCBCCTTCEEEEEEC
T ss_pred CCE--EccCcCCCCcCCCCCCEEEEECC
Confidence 889 788 6999999999999753
No 124
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=22.14 E-value=2.5e+02 Score=22.12 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=39.8
Q ss_pred eEEEEcCCCCe--EeCCCCCCHHHHHHHhC----CCCc--eEEECCEEeCC-----CccCCCCCEEEEe
Q 003255 780 VVIVCWPNGEI--MRLRSGSTAADAAMKVG----LEGK--LVLVNGQLVLP-----NTELKDGDIVEVR 835 (836)
Q Consensus 780 ~v~VftP~G~v--~~Lp~GsT~~DfAy~ih----v~~~--~~~VNg~lvpl-----~~~L~~GD~VeI~ 835 (836)
.|+|=+++|+. ++++..+|..|+--+|. +... -...+|+...- ++-+++|+.|.+.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 36788888874 67889999999888774 4332 24668887533 4556799998764
No 125
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=21.95 E-value=34 Score=32.03 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=18.8
Q ss_pred ceEEECCEEe---C-CCccCCCCCEEEE
Q 003255 811 KLVLVNGQLV---L-PNTELKDGDIVEV 834 (836)
Q Consensus 811 ~~~~VNg~lv---p-l~~~L~~GD~VeI 834 (836)
.+++|||+.+ | -.++|++||+|.|
T Consensus 89 NGT~vNg~~i~l~~~~~~~L~~GD~I~l 116 (132)
T 3va4_A 89 NGTQIVKPPRVLPPGVSHRLRDQELILF 116 (132)
T ss_dssp SCEEETTTTEEECTTCCEECCTTCEEEE
T ss_pred CCeEECCEEcccCCCCEEECCCCCEEEE
Confidence 3579999875 2 3578999999986
No 126
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=20.49 E-value=42 Score=39.21 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=23.2
Q ss_pred ceEEECCEEeCCCccCCCCCEEEEeC
Q 003255 811 KLVLVNGQLVLPNTELKDGDIVEVRV 836 (836)
Q Consensus 811 ~~~~VNg~lvpl~~~L~~GD~VeI~t 836 (836)
-.++|||+++.|+++|..+..|+++|
T Consensus 38 v~~~vng~~~dl~~~l~~d~~v~~~~ 63 (645)
T 1nyr_A 38 VAGKFNGQLVDLTKPLETDGSIEIVT 63 (645)
T ss_dssp CEEEETTEEECTTSCCCSCBCCCEEC
T ss_pred EEEEECCEEEeCCcccCCCCeEEEee
Confidence 34699999999999999999999886
Done!