BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003256
(836 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 653 SNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVN 712
SNP V+ +++ + E + LDEV A ++ P+ V ++IDA ++N
Sbjct: 367 SNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVIN 426
Query: 713 AFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDEL 749
A + VS GR+ +S L T P++ DEL
Sbjct: 427 AAKKFVS-------GRKSMAASGNLGHT-PFI--DEL 453
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 653 SNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVN 712
SNP V+ +++ + E + LDEV A ++ P+ V ++IDA ++N
Sbjct: 353 SNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVIN 412
Query: 713 AFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDEL 749
A + VS GR+ +S L T P++ DEL
Sbjct: 413 AAKKFVS-------GRKSMAASGNLGHT-PFI--DEL 439
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 653 SNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVN 712
SNP V+ +++ + E + LDEV A ++ P+ V ++IDA ++N
Sbjct: 337 SNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVIN 396
Query: 713 AFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDEL 749
A + VS GR+ +S L T P++ DEL
Sbjct: 397 AAKKFVS-------GRKSMAASGNLGHT-PFI--DEL 423
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 663 RIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPN 696
R+Y + N DD+ L+E+++ F +GNPN
Sbjct: 2 RVYFDNNATTRVDDRVLEEMIV--FYREKYGNPN 33
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 663 RIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPN 696
R+Y + N DD+ L+E ++ F +GNPN
Sbjct: 2 RVYFDNNATTRVDDRVLEEXIV--FYREKYGNPN 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,060,915
Number of Sequences: 62578
Number of extensions: 842979
Number of successful extensions: 1678
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1675
Number of HSP's gapped (non-prelim): 7
length of query: 836
length of database: 14,973,337
effective HSP length: 107
effective length of query: 729
effective length of database: 8,277,491
effective search space: 6034290939
effective search space used: 6034290939
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)