Query 003256
Match_columns 836
No_of_seqs 342 out of 2216
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 20:01:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 2E-145 5E-150 1312.9 80.9 753 22-781 18-802 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 9E-119 2E-123 1065.5 54.7 739 33-776 6-767 (769)
3 PRK03562 glutathione-regulated 100.0 5.7E-46 1.2E-50 438.7 42.3 369 50-442 5-381 (621)
4 PRK10669 putative cation:proto 100.0 1.2E-45 2.6E-50 434.4 41.7 372 51-441 7-389 (558)
5 PRK03659 glutathione-regulated 100.0 3.7E-45 8.1E-50 431.2 42.0 368 51-442 6-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 1.7E-43 3.7E-48 396.5 40.8 375 50-442 6-386 (397)
7 PRK05326 potassium/proton anti 100.0 7.6E-39 1.6E-43 376.6 35.7 377 49-441 5-388 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 1.2E-38 2.7E-43 359.0 -3.0 370 57-440 3-378 (380)
9 TIGR00932 2a37 transporter, mo 100.0 1.9E-34 4.1E-39 310.1 28.9 268 60-344 2-273 (273)
10 COG4651 RosB Kef-type K+ trans 100.0 8E-33 1.7E-37 280.9 28.9 377 45-442 2-389 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 1.4E-26 3.1E-31 269.6 37.4 366 37-412 2-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 9.1E-26 2E-30 262.4 36.1 366 56-440 4-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 1.3E-22 2.8E-27 229.8 37.3 376 50-441 6-407 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 4.3E-22 9.3E-27 212.3 26.7 372 48-438 5-387 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 1.8E-21 4E-26 226.3 33.2 366 62-441 21-417 (559)
16 PRK11175 universal stress prot 99.8 1.3E-19 2.8E-24 198.1 20.6 272 464-773 5-300 (305)
17 KOG4505 Na+/H+ antiporter [Ino 99.7 4.2E-16 9E-21 161.4 25.0 348 52-409 16-383 (467)
18 PRK14853 nhaA pH-dependent sod 99.7 7.1E-15 1.5E-19 162.6 32.9 300 110-439 62-394 (423)
19 KOG1965 Sodium/hydrogen exchan 99.7 1.7E-15 3.8E-20 169.8 22.0 381 52-441 37-455 (575)
20 TIGR00773 NhaA Na+/H+ antiport 99.5 2.5E-12 5.4E-17 139.9 22.1 270 110-409 52-344 (373)
21 cd01988 Na_H_Antiporter_C The 99.4 1.9E-12 4E-17 122.8 13.4 131 464-610 1-131 (132)
22 PRK14856 nhaA pH-dependent sod 99.2 3.9E-09 8.4E-14 116.9 25.8 269 109-409 67-398 (438)
23 PRK15456 universal stress prot 99.2 2.9E-10 6.3E-15 109.8 12.2 134 463-609 3-140 (142)
24 cd01989 STK_N The N-terminal d 99.2 3.8E-10 8.2E-15 109.3 13.0 140 464-614 1-146 (146)
25 PRK15005 universal stress prot 99.1 4.9E-10 1.1E-14 108.2 12.5 137 463-609 3-142 (144)
26 PRK09560 nhaA pH-dependent sod 99.1 1.4E-08 3.1E-13 110.9 22.9 270 110-409 59-353 (389)
27 PRK15118 universal stress glob 99.1 8.6E-10 1.9E-14 106.7 11.6 134 463-610 4-137 (144)
28 PRK09561 nhaA pH-dependent sod 99.1 2.1E-08 4.5E-13 109.4 22.6 270 110-409 59-351 (388)
29 PRK09982 universal stress prot 99.0 1.2E-09 2.6E-14 105.6 11.4 134 463-610 4-137 (142)
30 cd01989 STK_N The N-terminal d 99.0 1.6E-09 3.6E-14 104.9 12.2 129 630-773 1-145 (146)
31 PRK14854 nhaA pH-dependent sod 99.0 6.6E-08 1.4E-12 105.1 24.3 271 110-410 56-349 (383)
32 cd01987 USP_OKCHK USP domain i 99.0 2.3E-09 5E-14 100.8 11.2 121 464-609 1-122 (124)
33 PRK14855 nhaA pH-dependent sod 99.0 1.4E-07 2.9E-12 104.4 26.2 266 110-410 63-384 (423)
34 PRK15005 universal stress prot 99.0 3.4E-09 7.4E-14 102.3 11.7 128 628-772 2-144 (144)
35 PRK09982 universal stress prot 99.0 2.9E-09 6.3E-14 103.0 9.8 125 628-773 3-139 (142)
36 PF00582 Usp: Universal stress 98.9 3E-09 6.6E-14 100.5 9.2 137 463-610 3-139 (140)
37 cd01988 Na_H_Antiporter_C The 98.9 1.5E-08 3.3E-13 95.9 12.4 126 630-772 1-132 (132)
38 PRK15456 universal stress prot 98.9 1.3E-08 2.9E-13 98.2 12.1 127 628-772 2-142 (142)
39 PF06965 Na_H_antiport_1: Na+/ 98.9 1.1E-08 2.4E-13 111.5 12.3 272 110-411 55-353 (378)
40 KOG1966 Sodium/hydrogen exchan 98.8 8.1E-10 1.7E-14 124.0 1.8 367 61-441 53-449 (670)
41 PF00582 Usp: Universal stress 98.8 2.2E-08 4.7E-13 94.6 11.0 127 628-772 2-140 (140)
42 PRK10116 universal stress prot 98.8 3.4E-08 7.3E-13 95.2 10.4 134 463-610 4-137 (142)
43 PRK15118 universal stress glob 98.8 2.4E-08 5.2E-13 96.6 8.7 126 628-774 3-140 (144)
44 COG3004 NhaA Na+/H+ antiporter 98.8 1.2E-06 2.7E-11 91.8 21.5 260 119-411 71-356 (390)
45 PRK11175 universal stress prot 98.7 4E-08 8.7E-13 107.4 11.0 143 463-615 153-303 (305)
46 PRK10116 universal stress prot 98.7 4.9E-08 1.1E-12 94.0 9.1 125 628-772 3-138 (142)
47 cd00293 USP_Like Usp: Universa 98.7 1.9E-07 4.1E-12 87.2 11.3 129 464-609 1-129 (130)
48 cd01987 USP_OKCHK USP domain i 98.6 2.1E-07 4.6E-12 87.3 10.9 121 630-771 1-123 (124)
49 cd00293 USP_Like Usp: Universa 98.5 1.3E-06 2.8E-11 81.5 12.7 125 630-771 1-130 (130)
50 COG0589 UspA Universal stress 98.3 9.4E-06 2E-10 78.4 13.1 138 463-610 6-150 (154)
51 PRK12652 putative monovalent c 97.9 8.6E-05 1.9E-09 82.3 11.6 125 627-761 4-144 (357)
52 COG0589 UspA Universal stress 97.8 0.00013 2.8E-09 70.4 11.2 133 627-774 4-153 (154)
53 PF05684 DUF819: Protein of un 97.8 0.027 5.9E-07 63.3 29.6 316 73-426 24-363 (378)
54 PRK12460 2-keto-3-deoxyglucona 97.7 0.0063 1.4E-07 65.3 22.0 254 119-443 51-307 (312)
55 PRK12652 putative monovalent c 97.4 0.0013 2.7E-08 73.1 11.9 132 463-607 6-146 (357)
56 PF03812 KdgT: 2-keto-3-deoxyg 97.3 0.015 3.2E-07 62.2 18.2 88 117-205 49-140 (314)
57 COG0786 GltS Na+/glutamate sym 97.2 0.079 1.7E-06 58.4 23.0 123 283-406 230-360 (404)
58 TIGR00698 conserved hypothetic 97.2 0.23 5.1E-06 54.7 26.9 89 69-165 26-115 (335)
59 PF03616 Glt_symporter: Sodium 97.1 0.18 3.9E-06 56.6 25.3 89 295-390 246-341 (368)
60 COG3180 AbrB Putative ammonia 96.6 1.5 3.2E-05 48.3 26.5 331 51-442 7-349 (352)
61 COG0798 ACR3 Arsenite efflux p 96.6 0.54 1.2E-05 51.1 22.4 147 112-266 50-202 (342)
62 COG0385 Predicted Na+-dependen 96.5 1.3 2.9E-05 48.1 25.2 144 110-266 35-191 (319)
63 TIGR00210 gltS sodium--glutama 96.5 0.79 1.7E-05 51.9 24.7 92 295-389 244-338 (398)
64 PRK10490 sensor protein KdpD; 96.5 0.017 3.6E-07 72.7 12.5 123 461-610 249-372 (895)
65 PF03601 Cons_hypoth698: Conse 96.4 0.34 7.3E-06 52.9 19.8 103 70-186 22-126 (305)
66 PF03390 2HCT: 2-hydroxycarbox 96.3 0.73 1.6E-05 51.8 22.1 125 289-414 264-394 (414)
67 TIGR00793 kdgT 2-keto-3-deoxyg 96.2 0.21 4.5E-06 53.4 16.5 86 119-205 51-140 (314)
68 PRK03562 glutathione-regulated 96.2 0.17 3.6E-06 61.0 18.1 116 277-396 10-126 (621)
69 PRK10490 sensor protein KdpD; 96.1 0.029 6.3E-07 70.5 11.2 123 628-773 250-374 (895)
70 TIGR00932 2a37 transporter, mo 96.0 0.23 5E-06 53.4 16.4 129 283-417 3-133 (273)
71 PF13593 DUF4137: SBF-like CPA 95.8 2.2 4.8E-05 46.9 23.2 148 112-265 30-187 (313)
72 PRK03659 glutathione-regulated 95.8 0.33 7.2E-06 58.3 18.2 113 278-394 11-124 (601)
73 PRK10669 putative cation:proto 95.8 0.31 6.8E-06 58.1 18.0 132 280-417 14-146 (558)
74 PF05145 AmoA: Putative ammoni 95.7 4 8.7E-05 45.0 24.9 156 277-441 157-315 (318)
75 COG3493 CitS Na+/citrate sympo 95.6 0.73 1.6E-05 50.5 17.4 92 321-414 318-413 (438)
76 PF03601 Cons_hypoth698: Conse 95.5 0.46 9.9E-06 51.9 16.3 164 280-446 6-176 (305)
77 PF06826 Asp-Al_Ex: Predicted 95.5 0.19 4.2E-06 49.9 12.1 113 70-196 19-136 (169)
78 COG0475 KefB Kef-type K+ trans 95.5 0.57 1.2E-05 53.3 17.5 151 277-436 11-168 (397)
79 TIGR00930 2a30 K-Cl cotranspor 95.4 11 0.00024 47.8 34.4 102 459-581 572-678 (953)
80 TIGR00783 ccs citrate carrier 95.4 1.2 2.5E-05 49.2 18.7 119 295-414 203-327 (347)
81 TIGR00832 acr3 arsenical-resis 95.3 2.3 5.1E-05 47.0 21.4 99 117-224 47-150 (328)
82 PF03956 DUF340: Membrane prot 95.2 0.086 1.9E-06 53.4 8.8 126 78-224 2-132 (191)
83 PRK05274 2-keto-3-deoxyglucona 95.1 0.73 1.6E-05 50.7 16.4 47 120-166 54-100 (326)
84 COG2855 Predicted membrane pro 94.9 0.3 6.6E-06 53.1 12.1 117 290-409 31-147 (334)
85 PRK05326 potassium/proton anti 94.8 0.48 1E-05 56.6 15.2 117 279-398 13-132 (562)
86 PRK03818 putative transporter; 94.5 0.49 1.1E-05 56.1 14.0 131 52-196 8-142 (552)
87 cd01984 AANH_like Adenine nucl 94.4 0.12 2.5E-06 45.0 6.5 48 557-607 35-83 (86)
88 PF01758 SBF: Sodium Bile acid 94.1 3 6.5E-05 42.1 16.9 28 117-144 2-29 (187)
89 COG2205 KdpD Osmosensitive K+ 93.9 0.48 1E-05 56.9 11.9 121 460-605 246-366 (890)
90 TIGR00698 conserved hypothetic 93.8 1.2 2.6E-05 49.3 14.1 124 282-408 12-143 (335)
91 TIGR00844 c_cpa1 na(+)/h(+) an 93.7 1.4 3E-05 53.6 15.6 71 327-399 74-146 (810)
92 PLN03159 cation/H(+) antiporte 93.7 1.5 3.3E-05 54.7 16.5 108 625-732 455-582 (832)
93 COG2205 KdpD Osmosensitive K+ 93.4 0.35 7.6E-06 58.0 9.8 126 628-774 248-375 (890)
94 COG2855 Predicted membrane pro 92.8 18 0.00039 39.7 22.3 102 70-185 33-134 (334)
95 TIGR03082 Gneg_AbrB_dup membra 92.3 5 0.00011 39.3 14.8 120 281-407 4-126 (156)
96 TIGR00841 bass bile acid trans 92.1 20 0.00044 38.8 26.0 100 115-224 10-114 (286)
97 TIGR03802 Asp_Ala_antiprt aspa 91.6 0.95 2.1E-05 53.9 10.4 115 71-197 412-531 (562)
98 TIGR03802 Asp_Ala_antiprt aspa 91.5 0.84 1.8E-05 54.3 9.9 94 57-166 17-114 (562)
99 PRK04972 putative transporter; 91.4 0.81 1.8E-05 54.4 9.6 120 55-195 17-140 (558)
100 TIGR00831 a_cpa1 Na+/H+ antipo 91.2 2.6 5.6E-05 49.9 13.6 117 280-401 6-124 (525)
101 TIGR01625 YidE_YbjL_dupl AspT/ 90.3 1.8 3.8E-05 42.4 9.2 114 74-198 21-139 (154)
102 PF03616 Glt_symporter: Sodium 88.2 4.1 8.9E-05 45.9 11.5 114 328-442 66-185 (368)
103 COG1346 LrgB Putative effector 87.7 37 0.00081 35.2 16.8 110 317-439 62-171 (230)
104 PRK04288 antiholin-like protei 87.2 37 0.00081 35.5 16.8 108 319-439 67-174 (232)
105 PF03977 OAD_beta: Na+-transpo 86.8 3.9 8.5E-05 44.4 9.6 110 327-445 67-179 (360)
106 COG2985 Predicted permease [Ge 86.5 3.3 7.2E-05 47.1 9.2 103 116-224 62-173 (544)
107 COG3329 Predicted permease [Ge 85.9 22 0.00048 38.2 14.4 125 296-423 16-140 (372)
108 PF02040 ArsB: Arsenical pump 85.9 69 0.0015 36.8 19.7 38 187-224 117-154 (423)
109 PRK12460 2-keto-3-deoxyglucona 85.6 2.6 5.7E-05 45.7 7.7 76 77-165 169-244 (312)
110 PRK03359 putative electron tra 85.4 4.7 0.0001 42.9 9.5 108 634-755 31-149 (256)
111 PF03956 DUF340: Membrane prot 85.2 7.4 0.00016 39.5 10.4 49 357-405 58-106 (191)
112 TIGR00210 gltS sodium--glutama 84.5 8.8 0.00019 43.6 11.7 166 52-224 221-391 (398)
113 PRK04972 putative transporter; 84.4 6.5 0.00014 46.8 11.1 115 72-197 408-526 (558)
114 TIGR03136 malonate_biotin Na+- 84.0 18 0.00038 40.0 13.0 112 326-445 102-216 (399)
115 cd01984 AANH_like Adenine nucl 83.9 2.6 5.6E-05 36.4 5.7 34 631-665 1-34 (86)
116 PF01171 ATP_bind_3: PP-loop f 83.5 8 0.00017 38.8 9.9 93 630-731 1-107 (182)
117 TIGR02432 lysidine_TilS_N tRNA 82.8 7.2 0.00016 39.2 9.3 57 630-691 1-57 (189)
118 PF03547 Mem_trans: Membrane t 82.6 9.7 0.00021 42.9 11.3 107 300-409 10-119 (385)
119 PRK12342 hypothetical protein; 82.5 4.3 9.4E-05 43.1 7.7 107 633-754 29-145 (254)
120 TIGR03082 Gneg_AbrB_dup membra 81.7 5.3 0.00011 39.2 7.5 97 57-167 2-100 (156)
121 COG0025 NhaP NhaP-type Na+/H+ 81.5 11 0.00023 43.5 11.1 73 329-403 64-138 (429)
122 PRK03818 putative transporter; 80.4 9.2 0.0002 45.5 10.3 106 77-193 403-513 (552)
123 TIGR00808 malonate_madM malona 79.6 12 0.00025 37.9 8.9 112 51-169 17-135 (254)
124 COG1902 NemA NADH:flavin oxido 78.9 39 0.00084 38.0 14.1 128 582-733 192-324 (363)
125 TIGR00946 2a69 he Auxin Efflux 77.7 27 0.00059 38.4 12.5 109 72-196 180-289 (321)
126 PF00999 Na_H_Exchanger: Sodiu 76.2 0.94 2E-05 51.1 0.4 110 283-396 7-122 (380)
127 KOG2310 DNA repair exonuclease 74.2 5.5 0.00012 45.8 5.7 83 559-641 41-131 (646)
128 PF01012 ETF: Electron transfe 74.0 8.9 0.00019 37.6 6.7 83 638-731 14-101 (164)
129 PRK10711 hypothetical protein; 73.8 1.2E+02 0.0026 31.7 15.5 106 321-439 64-169 (231)
130 COG0786 GltS Na+/glutamate sym 72.9 12 0.00027 41.7 7.9 115 327-442 67-186 (404)
131 TIGR00659 conserved hypothetic 71.8 1.3E+02 0.0029 31.3 16.6 104 323-439 65-168 (226)
132 COG3263 NhaP-type Na+/H+ and K 69.9 47 0.001 37.8 11.4 108 287-396 22-131 (574)
133 COG2431 Predicted membrane pro 69.6 33 0.00071 36.5 9.7 78 76-166 108-189 (297)
134 PRK15475 oxaloacetate decarbox 69.0 11 0.00024 41.5 6.3 112 326-445 131-250 (433)
135 PRK15477 oxaloacetate decarbox 68.6 11 0.00024 41.5 6.2 111 326-444 131-249 (433)
136 PRK15476 oxaloacetate decarbox 68.6 11 0.00024 41.4 6.2 111 326-444 131-249 (433)
137 cd01993 Alpha_ANH_like_II This 68.2 39 0.00085 33.4 10.0 38 630-667 1-40 (185)
138 COG2086 FixA Electron transfer 67.5 18 0.0004 38.5 7.6 109 633-757 31-150 (260)
139 COG3180 AbrB Putative ammonia 66.3 1.7E+02 0.0037 32.6 14.8 126 276-411 10-139 (352)
140 cd01992 PP-ATPase N-terminal d 65.5 36 0.00077 33.8 9.1 57 630-691 1-57 (185)
141 KOG1288 Amino acid transporter 65.0 3.2E+02 0.007 33.2 20.2 122 438-581 537-663 (945)
142 COG1346 LrgB Putative effector 64.5 88 0.0019 32.5 11.4 96 63-167 19-118 (230)
143 TIGR01109 Na_pump_decarbB sodi 63.6 42 0.00091 36.6 9.3 110 326-444 60-178 (354)
144 PF05145 AmoA: Putative ammoni 63.3 73 0.0016 35.1 11.7 132 300-441 3-136 (318)
145 COG3969 Predicted phosphoadeno 62.9 19 0.00042 39.3 6.6 57 628-691 27-84 (407)
146 PF03977 OAD_beta: Na+-transpo 60.5 2.7E+02 0.0059 30.8 23.4 250 54-354 4-269 (360)
147 PRK09903 putative transporter 60.4 1E+02 0.0022 33.8 12.2 109 72-197 171-280 (314)
148 PF05982 DUF897: Domain of unk 58.9 66 0.0014 35.3 10.0 80 77-169 183-265 (327)
149 PF04172 LrgB: LrgB-like famil 57.4 2.4E+02 0.0052 29.2 14.6 84 352-439 75-158 (215)
150 TIGR00783 ccs citrate carrier 56.6 73 0.0016 35.4 10.0 109 67-184 196-307 (347)
151 COG5505 Predicted integral mem 56.6 3E+02 0.0065 30.0 23.8 285 108-417 55-360 (384)
152 COG2985 Predicted permease [Ge 55.5 34 0.00074 39.3 7.3 111 76-197 397-510 (544)
153 PRK05253 sulfate adenylyltrans 53.3 57 0.0012 35.7 8.5 39 629-667 28-66 (301)
154 COG4651 RosB Kef-type K+ trans 52.7 2.8E+02 0.0061 30.2 13.0 60 70-140 244-303 (408)
155 PF03652 UPF0081: Uncharacteri 52.5 43 0.00092 32.0 6.6 59 556-615 37-97 (135)
156 PRK06801 hypothetical protein; 51.3 54 0.0012 35.6 7.9 111 543-659 17-131 (286)
157 PRK10660 tilS tRNA(Ile)-lysidi 50.8 95 0.0021 35.9 10.3 58 629-691 16-74 (436)
158 COG0679 Predicted permeases [G 50.6 3.3E+02 0.0072 29.8 14.2 106 298-406 11-118 (311)
159 TIGR00840 b_cpa1 sodium/hydrog 48.2 93 0.002 37.2 9.9 74 328-403 69-151 (559)
160 COG1883 OadB Na+-transporting 46.7 8.6 0.00019 40.8 0.9 131 328-469 83-214 (375)
161 PRK06806 fructose-bisphosphate 46.7 1.9E+02 0.004 31.4 11.1 112 542-658 16-130 (281)
162 TIGR03136 malonate_biotin Na+- 46.5 4.7E+02 0.01 29.4 22.8 254 51-355 21-307 (399)
163 COG2201 CheB Chemotaxis respon 46.1 94 0.002 34.6 8.8 42 560-610 37-80 (350)
164 PRK04288 antiholin-like protei 45.3 3E+02 0.0064 28.9 11.8 42 124-165 78-119 (232)
165 PF03812 KdgT: 2-keto-3-deoxyg 44.8 61 0.0013 35.3 6.9 75 78-165 175-249 (314)
166 PF13593 DUF4137: SBF-like CPA 44.8 2.6E+02 0.0057 30.7 12.2 91 299-392 7-98 (313)
167 TIGR01625 YidE_YbjL_dupl AspT/ 44.8 1E+02 0.0023 30.1 8.0 88 298-385 23-116 (154)
168 COG0037 MesJ tRNA(Ile)-lysidin 44.1 1.6E+02 0.0034 31.7 10.4 56 629-691 22-77 (298)
169 PRK12737 gatY tagatose-bisphos 42.5 83 0.0018 34.1 7.6 70 543-616 17-86 (284)
170 cd01713 PAPS_reductase This do 42.5 93 0.002 29.9 7.6 36 630-666 1-36 (173)
171 TIGR02039 CysD sulfate adenyly 42.4 77 0.0017 34.5 7.4 38 630-667 21-58 (294)
172 PRK12857 fructose-1,6-bisphosp 42.0 86 0.0019 34.0 7.6 69 543-615 17-85 (284)
173 PRK04125 murein hydrolase regu 42.0 2.7E+02 0.0059 26.8 10.1 19 331-349 68-88 (141)
174 PRK00109 Holliday junction res 41.7 65 0.0014 30.9 6.0 57 558-615 42-99 (138)
175 PF03547 Mem_trans: Membrane t 41.1 2.4E+02 0.0052 31.6 11.7 87 297-384 244-335 (385)
176 PRK04125 murein hydrolase regu 40.7 1.8E+02 0.0039 28.0 8.7 26 50-75 8-33 (141)
177 PF07905 PucR: Purine cataboli 40.6 1.9E+02 0.0042 26.8 9.0 89 487-579 17-108 (123)
178 PRK09765 PTS system 2-O-a-mann 40.1 7.7E+02 0.017 30.0 16.4 26 240-265 418-443 (631)
179 COG1646 Predicted phosphate-bi 39.5 1.5E+02 0.0032 31.1 8.3 60 546-610 16-76 (240)
180 TIGR01109 Na_pump_decarbB sodi 39.4 5.6E+02 0.012 28.3 18.6 80 58-144 6-91 (354)
181 COG4827 Predicted transporter 38.5 2.2E+02 0.0048 29.1 9.1 45 115-159 11-57 (239)
182 PF04172 LrgB: LrgB-like famil 38.3 2E+02 0.0043 29.9 9.2 35 131-165 69-103 (215)
183 TIGR00793 kdgT 2-keto-3-deoxyg 37.7 1.2E+02 0.0027 32.9 7.8 75 78-165 175-249 (314)
184 PF03390 2HCT: 2-hydroxycarbox 37.6 6.8E+02 0.015 28.7 16.5 93 294-389 58-155 (414)
185 PRK08185 hypothetical protein; 37.3 1.2E+02 0.0027 32.7 8.0 109 543-659 12-125 (283)
186 cd01985 ETF The electron trans 37.1 1.9E+02 0.0042 28.6 9.0 81 638-732 18-103 (181)
187 KOG1650 Predicted K+/H+-antipo 36.5 3.4E+02 0.0073 33.9 12.5 67 115-186 312-378 (769)
188 KOG2563 Permease of the major 36.5 7.1E+02 0.015 29.0 13.9 74 50-124 84-159 (480)
189 COG0816 Predicted endonuclease 35.4 90 0.002 30.1 5.8 57 558-615 41-98 (141)
190 PF06826 Asp-Al_Ex: Predicted 35.4 4.2E+02 0.0091 26.3 10.8 91 295-386 22-116 (169)
191 PF02355 SecD_SecF: Protein ex 35.3 4.9E+02 0.011 26.3 14.3 119 146-265 60-189 (189)
192 PF05684 DUF819: Protein of un 35.2 5.1E+02 0.011 29.3 12.8 97 323-424 52-152 (378)
193 TIGR01858 tag_bisphos_ald clas 35.1 1.3E+02 0.0028 32.6 7.7 70 543-616 15-84 (282)
194 TIGR02185 Trep_Strep conserved 35.1 4.9E+02 0.011 26.3 14.9 128 249-381 40-185 (189)
195 TIGR00946 2a69 he Auxin Efflux 35.0 6.3E+02 0.014 27.5 25.3 134 297-438 182-318 (321)
196 PF05982 DUF897: Domain of unk 34.3 5.1E+02 0.011 28.6 11.9 84 357-440 57-141 (327)
197 PRK12933 secD preprotein trans 33.9 4.6E+02 0.01 31.6 12.5 57 142-198 464-522 (604)
198 TIGR00659 conserved hypothetic 33.6 4.4E+02 0.0096 27.5 10.9 40 126-165 74-113 (226)
199 PF09605 Trep_Strep: Hypotheti 33.4 5.2E+02 0.011 26.0 16.4 127 249-380 38-181 (186)
200 PRK12738 kbaY tagatose-bisphos 33.1 1.7E+02 0.0036 31.9 8.1 69 543-616 17-86 (286)
201 cd00947 TBP_aldolase_IIB Tagat 33.1 1.5E+02 0.0032 32.1 7.7 70 543-616 12-81 (276)
202 TIGR01520 FruBisAldo_II_A fruc 32.6 1.9E+02 0.0042 32.3 8.6 72 543-616 26-111 (357)
203 PRK13523 NADPH dehydrogenase N 31.4 3E+02 0.0065 30.6 10.1 124 582-731 185-309 (337)
204 PRK09903 putative transporter 31.2 6.2E+02 0.013 27.6 12.6 86 298-386 11-97 (314)
205 COG2035 Predicted membrane pro 31.1 7E+02 0.015 26.9 15.2 49 44-94 55-105 (276)
206 cd04734 OYE_like_3_FMN Old yel 30.6 3E+02 0.0065 30.6 10.0 128 582-732 184-320 (343)
207 PF02601 Exonuc_VII_L: Exonucl 30.5 90 0.002 34.3 5.8 26 707-732 57-87 (319)
208 PRK12563 sulfate adenylyltrans 30.3 1.4E+02 0.0031 32.7 7.1 38 630-667 39-76 (312)
209 PRK09195 gatY tagatose-bisphos 30.1 1.6E+02 0.0036 31.8 7.4 69 543-615 17-85 (284)
210 COG0679 Predicted permeases [G 30.0 7.6E+02 0.016 26.9 29.0 134 296-436 167-303 (311)
211 PRK01658 holin-like protein; V 29.8 3.6E+02 0.0078 25.3 8.7 95 50-158 5-107 (122)
212 PRK09197 fructose-bisphosphate 29.4 2.3E+02 0.005 31.6 8.5 72 543-616 20-104 (350)
213 TIGR00250 RNAse_H_YqgF RNAse H 28.9 2.1E+02 0.0047 27.0 7.2 59 556-615 34-93 (130)
214 COG1597 LCB5 Sphingosine kinas 28.3 55 0.0012 35.8 3.5 54 699-753 36-90 (301)
215 PRK05812 secD preprotein trans 28.0 5.6E+02 0.012 30.2 11.9 56 143-198 358-414 (498)
216 COG1570 XseA Exonuclease VII, 27.9 76 0.0017 36.3 4.6 27 706-732 177-205 (440)
217 COG2117 Predicted subunit of t 27.7 72 0.0016 31.3 3.7 96 630-737 2-113 (198)
218 COG3748 Predicted membrane pro 27.0 5.1E+02 0.011 28.5 10.1 40 328-368 226-265 (407)
219 cd04740 DHOD_1B_like Dihydroor 26.8 8.2E+02 0.018 26.3 13.5 163 560-755 105-292 (296)
220 PRK01821 hypothetical protein; 26.7 4.1E+02 0.0089 25.3 8.6 26 50-75 10-35 (133)
221 PRK13399 fructose-1,6-bisphosp 26.6 2.3E+02 0.0049 31.7 7.9 70 543-616 17-87 (347)
222 cd04733 OYE_like_2_FMN Old yel 26.4 6.1E+02 0.013 28.0 11.5 124 582-731 192-326 (338)
223 PRK10711 hypothetical protein; 26.2 5E+02 0.011 27.2 9.9 40 126-165 75-114 (231)
224 PRK09196 fructose-1,6-bisphosp 26.1 2E+02 0.0044 32.1 7.4 70 543-616 17-87 (347)
225 cd04735 OYE_like_4_FMN Old yel 25.9 3.3E+02 0.0073 30.4 9.4 125 582-731 187-317 (353)
226 TIGR01521 FruBisAldo_II_B fruc 25.7 2.4E+02 0.0052 31.5 7.9 70 543-616 15-85 (347)
227 PRK05835 fructose-bisphosphate 25.3 2.4E+02 0.0052 30.9 7.7 110 543-658 16-130 (307)
228 KOG1965 Sodium/hydrogen exchan 25.1 3.4E+02 0.0073 32.3 9.2 71 329-401 103-180 (575)
229 cd02929 TMADH_HD_FMN Trimethyl 25.1 6.1E+02 0.013 28.5 11.3 126 582-732 193-324 (370)
230 cd00946 FBP_aldolase_IIA Class 24.7 3E+02 0.0065 30.7 8.4 72 543-616 15-99 (345)
231 COG3493 CitS Na+/citrate sympo 23.6 7.8E+02 0.017 27.8 11.0 112 64-184 278-393 (438)
232 PF03600 CitMHS: Citrate trans 23.2 7.1E+02 0.015 27.4 11.4 16 188-203 118-133 (351)
233 PRK08578 preprotein translocas 23.1 9.9E+02 0.021 25.9 12.4 24 242-265 265-288 (292)
234 PRK01658 holin-like protein; V 22.9 6.4E+02 0.014 23.6 10.2 19 331-349 65-85 (122)
235 cd00453 FTBP_aldolase_II Fruct 22.6 2E+02 0.0044 31.9 6.4 71 543-615 12-96 (340)
236 TIGR00167 cbbA ketose-bisphosp 22.5 3.3E+02 0.0071 29.6 8.1 71 543-616 17-89 (288)
237 PF13194 DUF4010: Domain of un 22.5 8.6E+02 0.019 25.0 15.8 26 283-308 138-164 (211)
238 TIGR03248 galactar-dH20 galact 22.3 6.8E+02 0.015 29.5 10.9 106 640-759 174-297 (507)
239 cd02930 DCR_FMN 2,4-dienoyl-Co 22.2 5.7E+02 0.012 28.5 10.3 125 583-731 181-310 (353)
240 PF03686 UPF0146: Uncharacteri 22.1 1.4E+02 0.0029 28.3 4.3 35 547-581 72-106 (127)
241 PF01507 PAPS_reduct: Phosphoa 22.0 1.9E+02 0.0041 28.0 5.8 51 630-691 1-51 (174)
242 PHA03164 hypothetical protein; 21.5 90 0.0019 26.3 2.6 60 7-68 21-81 (88)
243 PRK09796 PTS system cellobiose 21.4 1.3E+03 0.029 26.9 17.8 33 151-187 160-192 (472)
244 PRK07998 gatY putative fructos 21.4 2.5E+02 0.0054 30.5 6.8 109 543-658 17-130 (283)
245 PRK14561 hypothetical protein; 21.4 4.9E+02 0.011 26.3 8.7 32 630-666 2-33 (194)
246 cd01986 Alpha_ANH_like Adenine 21.3 3E+02 0.0066 24.3 6.5 33 631-667 1-33 (103)
247 COG1380 Putative effector of m 21.2 6.6E+02 0.014 23.8 8.7 28 49-76 5-32 (128)
248 PRK01663 C4-dicarboxylate tran 20.8 1.3E+03 0.028 26.5 14.3 36 131-166 66-101 (428)
249 COG1560 HtrB Lauroyl/myristoyl 20.6 1.8E+02 0.0039 31.9 5.7 54 600-666 191-244 (308)
250 TIGR00832 acr3 arsenical-resis 20.5 1.2E+03 0.025 25.8 13.5 67 339-407 56-127 (328)
251 cd01995 ExsB ExsB is a transcr 20.3 5.7E+02 0.012 24.8 8.8 85 630-731 1-87 (169)
252 PF02844 GARS_N: Phosphoribosy 20.0 89 0.0019 28.2 2.6 24 556-579 48-71 (100)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=2.4e-145 Score=1312.88 Aligned_cols=753 Identities=35% Similarity=0.609 Sum_probs=685.2
Q ss_pred cccccCccccccccCccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceecccccccccccccc
Q 003256 22 TCVSYNESTKFSYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAY 101 (836)
Q Consensus 22 ~C~~~~~~~~~~s~gi~~~~~pl~~~l~~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~ 101 (836)
+|+..++. +|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|.++.+.+.
T Consensus 18 ~c~~~~~~---~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~ 94 (832)
T PLN03159 18 VCYAPMMI---TTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANT 94 (832)
T ss_pred ccccCCCc---cCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhh
Confidence 59954455 999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhcccccc--chHHHHHH
Q 003256 102 VTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRI--HDQGISIS 179 (836)
Q Consensus 102 lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~--~~~sl~lg 179 (836)
+||.++.+.+++++++|++|+||++|+|+|++.+|+++|+++.+|+.++++|+++|++++++++...... ....+++|
T Consensus 95 ~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g 174 (832)
T PLN03159 95 IFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLG 174 (832)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 9998888899999999999999999999999999999999999999999999999998888774321100 11248999
Q ss_pred HhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccch-hHHHHHHHHHHHHHHHHHHHHHH
Q 003256 180 FVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYR-SVAIRIELSLCAMSLFTFLVLWP 257 (836)
Q Consensus 180 ~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~v~r~ 257 (836)
+++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++ +..+...+.. ...++.++..++|++++++++||
T Consensus 175 ~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~ 254 (832)
T PLN03159 175 VALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRP 254 (832)
T ss_pred HHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 7665433322 34566777778888899999999
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 003256 258 TIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYI 337 (836)
Q Consensus 258 ~~~~i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~ 337 (836)
++.|+.+|++++++.++.++.++++++++++++++.+|+|+++|||++|+++|+. |+++++.+|++++++++|+|+||+
T Consensus 255 ~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~-~~~~~l~ekle~~~~~lflPlFFv 333 (832)
T PLN03159 255 GIWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-PLGVTLIEKLEDFVSGLLLPLFFA 333 (832)
T ss_pred HHHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888889999999999999999999999999999999999999984 899999999999999999999999
Q ss_pred HhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhh
Q 003256 338 HVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQT 417 (836)
Q Consensus 338 ~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~ 417 (836)
++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++++.|+++++.
T Consensus 334 ~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~ 413 (832)
T PLN03159 334 ISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDES 413 (832)
T ss_pred HhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchh
Confidence 99999999887644456666677788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhccccchhhhhhhcccccCCCCccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEE
Q 003256 418 YSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYV 497 (836)
Q Consensus 418 ~~~~vl~~lv~t~i~~plv~~l~~p~~~~~~~~~r~i~~~~~~~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~ 497 (836)
|++++++++++|.+++|+++++|+|+|||..|++|++|+.++++|+|||+|+|+++|++++++|++++++++++|+++|+
T Consensus 414 f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~ 493 (832)
T PLN03159 414 FAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYV 493 (832)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCccchhccccccccc-----ccCchHHHHHHHHHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCc
Q 003256 498 VHLVELVGRAAPVVETYSTQKTKA-----MANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCIT 572 (836)
Q Consensus 498 lhlvel~~r~~p~~~~~~~~~~~~-----~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~ad 572 (836)
+||||+++|++|++++|+.+++.. ...++++++++|+.|++++ +.++|+++|++||+++||+|||+.|+|+++|
T Consensus 494 lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~s 572 (832)
T PLN03159 494 LHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCNLAEDKRVS 572 (832)
T ss_pred EEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHHHHHhcCCC
Confidence 999999999999999998753211 2345789999999999754 6899999999999999999999999999999
Q ss_pred EEEEecCCC---CCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHH
Q 003256 573 LILLQFIPP---NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVS 649 (836)
Q Consensus 573 lIi~~~h~~---~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~ 649 (836)
+||+||||+ ||+++.++..+|.+|++||++||||||||||||... ..+.+.....+||+++|+|||||||||+||+
T Consensus 573 lIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~-~~~~~~~~~~~~v~~~F~GG~DDREALa~a~ 651 (832)
T PLN03159 573 LIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSG-ATRLASNQVSHHVAVLFFGGPDDREALAYAW 651 (832)
T ss_pred EEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCc-cccccccccceeEEEEecCCcchHHHHHHHH
Confidence 999999998 788888888999999999999999999999999652 1122334457899999999999999999999
Q ss_pred HhhcCCCeEEEEEEEeecCCccc--------------------chhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHH
Q 003256 650 HMSSNPGVRITLSRIYLEENLVE--------------------EEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQ 709 (836)
Q Consensus 650 rmA~~~~~~Ltvvrv~~~~~~~~--------------------~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~ 709 (836)
|||+||++++||+||++++...+ ++.|+++||++++||+.++.+++++.|.|+.|+||+|
T Consensus 652 rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e 731 (832)
T PLN03159 652 RMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEE 731 (832)
T ss_pred HHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHH
Confidence 99999999999999997532211 3568889999999999998877899999999999999
Q ss_pred HHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeeccccCCCh
Q 003256 710 LVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRILKKDP 781 (836)
Q Consensus 710 ~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~~~~~~~~ 781 (836)
+.++||+++++|||+||||+|+.+|++|+||+||+||||||+|||+|||+|| .+++||||||||+....+|
T Consensus 732 ~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~-~~~~SVLVvQQ~~~~~~~~ 802 (832)
T PLN03159 732 TVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDF-AATVSVLVVQQYVGTGPQP 802 (832)
T ss_pred HHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCC-CCceeEEEEEeeccCCCCc
Confidence 9999999998999999999988779999999999999999999999999999 9999999999998665555
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-119 Score=1065.54 Aligned_cols=739 Identities=34% Similarity=0.557 Sum_probs=674.8
Q ss_pred cccCccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHH
Q 003256 33 SYHGINLDEEAVSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQ 112 (836)
Q Consensus 33 ~s~gi~~~~~pl~~~l~~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~ 112 (836)
.+.|.|.++||++|++|++++|+.+++++++++++++||+|||++++++++||++||+.+|.++.+.+.+||.++...++
T Consensus 6 ~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~ 85 (769)
T KOG1650|consen 6 TSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLE 85 (769)
T ss_pred ccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccc-h----H-H-HHHHHhhccc
Q 003256 113 AASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIH-D----Q-G-ISISFVASKC 185 (836)
Q Consensus 113 ~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~-~----~-s-l~lg~~ls~T 185 (836)
+++.+|+.+|+|+.|+|+|.+.+++.+|++..+|+.++++|+..|.++...+........ . . . .++..+++.|
T Consensus 86 ~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~t 165 (769)
T KOG1650|consen 86 LLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSIT 165 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999888877753332211 1 1 2 7888999999
Q ss_pred cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 186 AYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKY--RSVAIRIELSLCAMSLFTFLVLWPTIQWI 262 (836)
Q Consensus 186 s~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~v~r~~~~~i 262 (836)
+||+++++|.|+|++++++||+++++++++|+.+|.+++ ......... .....|.+...+++++++.+++||++.|+
T Consensus 166 sfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi 245 (769)
T KOG1650|consen 166 SFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWI 245 (769)
T ss_pred hhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHH
Confidence 999999999999999999999999999999999999888 666554332 24457788888889999999999999999
Q ss_pred HHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003256 263 IRRIPERKPVKDFYIVAILTGALVMAVACDSMR-VNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQ 341 (836)
Q Consensus 263 ~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G-~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl 341 (836)
.+|+|+++|+++.+...++..+++++.+++.++ +|+++|||+.|+++|++||+++.+.+|+|++.+++|+|+||+.+|+
T Consensus 246 ~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~ 325 (769)
T KOG1650|consen 246 IKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGL 325 (769)
T ss_pred hhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999988 8999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHH
Q 003256 342 QIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVL 421 (836)
Q Consensus 342 ~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~ 421 (836)
++|+..+.. |......+...+++|++++..++.++|+|+||++.+|++|++||.+|++.++.+.+.|+++++.|+++
T Consensus 326 k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~ 402 (769)
T KOG1650|consen 326 KTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVM 402 (769)
T ss_pred ceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHH
Confidence 999998873 76677778888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhccccchhhhhhhcccccCCCCccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEe
Q 003256 422 VLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLV 501 (836)
Q Consensus 422 vl~~lv~t~i~~plv~~l~~p~~~~~~~~~r~i~~~~~~~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlv 501 (836)
+++++++|.+++|+++.+|||.+++.+|++|++|+.++++++|+|.|+|++++++++++++|++.+++++|.++|++|+|
T Consensus 403 vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lhlv 482 (769)
T KOG1650|consen 403 VLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYALHLV 482 (769)
T ss_pred HHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred eccCCCccchhccccccc-cc--ccCchHHHHHHHHHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEec
Q 003256 502 ELVGRAAPVVETYSTQKT-KA--MANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQF 578 (836)
Q Consensus 502 el~~r~~p~~~~~~~~~~-~~--~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~ 578 (836)
|+.+|+.|+++.|+.++. .. .....+++..+|+.|++.+++.+.++++|++||+.+||+|||.+|.++++++|++||
T Consensus 483 eL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~liilpf 562 (769)
T KOG1650|consen 483 ELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSLIILPF 562 (769)
T ss_pred ecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcEEEeeh
Confidence 999999999999987654 22 333456899999999885457799999999999999999999999999999999999
Q ss_pred CCC---CCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCC
Q 003256 579 IPP---NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNP 655 (836)
Q Consensus 579 h~~---~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~ 655 (836)
|++ +|..+..+..+|++|++|+++|||||||++|||.. +..........++|++.|+||+||||||+++.||++|+
T Consensus 563 hk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~-~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~~~~ 641 (769)
T KOG1650|consen 563 HKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLR-RSGVTQKRGSSYKVVVLFLGGKDDREALALAKRMAENP 641 (769)
T ss_pred hhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcc-cccceecccceeEEEEEecCChhhHHHHHHHHHHhhCC
Confidence 998 45788888999999999999999999999999822 22122222367899999999999999999999999999
Q ss_pred CeEEEEEEEeecCCccc----chhhhhhHHHHHHHH-HhhcCCCCCEEEE-EEEcCChHHHHHHHHhcccCCcEEEEccc
Q 003256 656 GVRITLSRIYLEENLVE----EEDDKCLDEVVMNDF-MASNFGNPNVVCR-RIDANDSNQLVNAFRSLVSDNDLVIVGRQ 729 (836)
Q Consensus 656 ~~~Ltvvrv~~~~~~~~----~~~e~~~d~~~l~~~-~~~~~~~~~v~y~-e~~v~~g~~~~~~i~~~~~~~DLiivG~~ 729 (836)
++++||+|++++++..+ +++++..|++..+++ +.....+.++.|. |+.+.++.|+.++++++.++|||++|||+
T Consensus 642 ~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~ 721 (769)
T KOG1650|consen 642 RVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSITEDYDLFIVGRS 721 (769)
T ss_pred ceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhccccceEEEecc
Confidence 99999999998654322 366778888888887 5455455577788 69999999999999999999999999999
Q ss_pred CCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeeccc
Q 003256 730 QPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVRI 776 (836)
Q Consensus 730 ~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~~~ 776 (836)
++.+++.+.|+++|+||||||+|||.|+|+|| .++.||||+|||.+
T Consensus 722 ~~~~~~~t~gl~~W~e~pELg~IGd~las~~~-~~~~svlvvqq~~~ 767 (769)
T KOG1650|consen 722 HGMLSEATGGLSEWSECPELGVIGDLLASSDF-SSKVSVLVVQQQLY 767 (769)
T ss_pred cccccchhcCchhcccCccccccCcccccccc-CccceEEEEEeeec
Confidence 99999999999999999999999999999999 99999999999965
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=5.7e-46 Score=438.68 Aligned_cols=369 Identities=14% Similarity=0.202 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhc
Q 003256 50 VVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVK 129 (836)
Q Consensus 50 ~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle 129 (836)
.++.|+.+++.++.++..++||+|+|+++|||++|+++||+++|.+++ .+.++.++++|++++||.+|+|
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~----------~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD----------VESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC----------HHHHHHHHHHHHHHHHHHHHhC
Confidence 378999999999999999999999999999999999999999998642 4668899999999999999999
Q ss_pred cCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHH
Q 003256 130 MDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAI 209 (836)
Q Consensus 130 ~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~l 209 (836)
+|++.+++.+|+++.+|..++++++++++.++++++..+. .++++|.+++.||++++.++|+|+|+++++.||.++
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~----~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l 150 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQ----VALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAF 150 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHH
Confidence 9999999999999999999999999998888877765443 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHhhcc-cc-hhHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 003256 210 SSALLHEIVGLLRLL-MAPLSKA-KY-RSVA-IRIELSL----CAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAIL 281 (836)
Q Consensus 210 s~a~v~Di~~~~ll~-~~~~~~~-~~-~~~~-~~~~~~~----v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il 281 (836)
+.++++|+.+|++++ +..+... .. .... ...++.. ++++++..++.+|++.|+.++ +.+|.+...++
T Consensus 151 ~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-----~~~e~~~~~~l 225 (621)
T PRK03562 151 AILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-----GLREVFTAVAL 225 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHHHHH
Confidence 999999999999988 6444322 11 1111 1122222 222233344556666665543 23678888888
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 003256 282 TGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELII 361 (836)
Q Consensus 282 ~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii 361 (836)
+++++++++++.+|+|+++|||++|+++++. ++++++.++++++ .++|+|+||+++|+++|+..+. ..++.++.++
T Consensus 226 ~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~--~~~~~il~~~ 301 (621)
T PRK03562 226 FLVFGFGLLMEEVGLSMALGAFLAGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLL--ENPLRILILL 301 (621)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHH--HHHHHHHHHH
Confidence 8899999999999999999999999999986 7899999999998 7999999999999999998775 2333344555
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHhcc
Q 003256 362 MAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYN 441 (836)
Q Consensus 362 ~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~ 441 (836)
++.+++|++++++.++++|+++++++.+|++|+++|+++++++.++.+.|+++++.|+.+++++++ |.+.+|++..+|+
T Consensus 302 ~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~l-S~~~tP~l~~~~~ 380 (621)
T PRK03562 302 LGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVAL-SMAATPLLLVLLD 380 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 667899999999999999999999999999999999999999999999999999999999987766 5666666666665
Q ss_pred c
Q 003256 442 P 442 (836)
Q Consensus 442 p 442 (836)
+
T Consensus 381 ~ 381 (621)
T PRK03562 381 R 381 (621)
T ss_pred H
Confidence 4
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=434.45 Aligned_cols=372 Identities=17% Similarity=0.248 Sum_probs=316.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhcc
Q 003256 51 VMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKM 130 (836)
Q Consensus 51 ~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~ 130 (836)
++..+.++++++.+++.++||+|+|.+++||++|+++||+++|..+ ..+.++.++++|++++||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence 4567788899999999999999999999999999999999998743 236788999999999999999999
Q ss_pred CcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHH
Q 003256 131 DKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAIS 210 (836)
Q Consensus 131 d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls 210 (836)
|++.+++.++.....++.++++|++++++++++++..+. .++++|++++.||++++.++|+|+|+++++.||++++
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~ 152 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWSLM----TGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIG 152 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHH
Confidence 999999998888878888999999999888877764332 5688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHhhc---ccc-h-h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHH
Q 003256 211 SALLHEIVGLLRLL-MAPLSK---AKY-R-S----VAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAI 280 (836)
Q Consensus 211 ~a~v~Di~~~~ll~-~~~~~~---~~~-~-~----~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~i 280 (836)
+++++|+.+|+++. +..+.. .+. + . ...+.++..++++++++++.|+++.|+.++.++.+ .+|.+...+
T Consensus 153 ~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~~ 231 (558)
T PRK10669 153 WLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLSV 231 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 99999999998887 544321 111 1 1 12344556667777788899999999999987653 578888878
Q ss_pred HHHHHHHHHH-HHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH
Q 003256 281 LTGALVMAVA-CDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALEL 359 (836)
Q Consensus 281 l~~~l~~~~i-ae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ 359 (836)
+++++++++. ++.+|+|+++|||++|+++|+. +.++++.+...++ .++|+|+||+++|+++|+..+. ..+.....
T Consensus 232 l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~--~~~~~~~~ 307 (558)
T PRK10669 232 LALALGIAFGAVELFDVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILI--QQPLAVLA 307 (558)
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHH--HHHHHHHH
Confidence 8888877764 6999999999999999999986 6777787777775 7889999999999999998775 23333445
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 003256 360 IIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVY 439 (836)
Q Consensus 360 ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l 439 (836)
++++.+++|++++++.++++|+++|+++.+|+.|++||+++++++..+++.|+++++.|++++++++++++++|.+.++.
T Consensus 308 ~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 308 TLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677899999999999999999999999999999999999999999999999999999999999999887777777765
Q ss_pred cc
Q 003256 440 YN 441 (836)
Q Consensus 440 ~~ 441 (836)
.+
T Consensus 388 ~~ 389 (558)
T PRK10669 388 ER 389 (558)
T ss_pred hH
Confidence 44
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=3.7e-45 Score=431.19 Aligned_cols=368 Identities=15% Similarity=0.203 Sum_probs=307.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhcc
Q 003256 51 VMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKM 130 (836)
Q Consensus 51 ~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~ 130 (836)
++.++.+++.++.++..++||+|+|+++||+++|+++||+++|.+++ .+.+..++++|++++||.+|+|+
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~----------~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD----------VDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc----------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 57788999999999999999999999999999999999999998642 35678999999999999999999
Q ss_pred CcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHH
Q 003256 131 DKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAIS 210 (836)
Q Consensus 131 d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls 210 (836)
|++.+++.+|+++.+|..++++|+++++++.++++..+ ..++++|++++.||++++.++|+|+|+++++.||++++
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~~----~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~ 151 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFSW----QAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFS 151 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHH
Confidence 99999999999999999999999988777766654333 25788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHhhcccchh-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHH
Q 003256 211 SALLHEIVGLLRLL-MAPLSKAKYRS-VAI---RIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGAL 285 (836)
Q Consensus 211 ~a~v~Di~~~~ll~-~~~~~~~~~~~-~~~---~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l 285 (836)
..+++|+.++++++ ...+....... .+. +.++..++++++..++.+|++.|+.+. +.+|.+...++++++
T Consensus 152 vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~~vl 226 (601)
T PRK03659 152 VLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALLLVL 226 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHH
Confidence 99999999998888 54443222111 111 111222222223334555555555433 346888888888899
Q ss_pred HHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Q 003256 286 VMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAY 365 (836)
Q Consensus 286 ~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~ 365 (836)
+++++++.+|+|+++|||++|+++++. ++++++.++++++ .++|+|+||+++|+++|+..+. ..|..++.++++.+
T Consensus 227 ~~a~l~~~~Gls~~LGAFlaGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~--~~~~~il~~~~~~l 302 (601)
T PRK03659 227 GSALFMDALGLSMALGTFIAGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLY--THLLWVLISVVVLV 302 (601)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHH--HhHHHHHHHHHHHH
Confidence 999999999999999999999999996 7889999999998 7999999999999999998775 33444555666778
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHhccc
Q 003256 366 IGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNP 442 (836)
Q Consensus 366 ~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p 442 (836)
++|++++++.++++|+++++++.+|+.|+++|+++++++..+.+.|+++++.|+.++++++++ .+.+|++..+|+|
T Consensus 303 ~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls-~~~tP~l~~~~~~ 378 (601)
T PRK03659 303 AVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLS-MMTTPLLMKLIDK 378 (601)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhHH
Confidence 899999999999999999999999999999999999999999999999999999998777775 4667777777665
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=396.46 Aligned_cols=375 Identities=20% Similarity=0.304 Sum_probs=320.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhc
Q 003256 50 VVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVK 129 (836)
Q Consensus 50 ~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle 129 (836)
..+.|+.++++++.+++.++||+|+|+++||+++|+++||..++.. .+..+.++.++++|++++||.+|+|
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GLE 76 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGLE 76 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHHC
Confidence 4688999999999999999999999999999999999999544432 2357899999999999999999999
Q ss_pred cCcchhhhccch-hhHHHHHHHHHHHHHHHHHHHH-hhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHH
Q 003256 130 MDKGMIPRTIKK-TYSVSLTVFIVPLLISLLVGHR-EQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQL 207 (836)
Q Consensus 130 ~d~~~l~~~~~~-~~~ia~~~~l~p~~lg~~~~~~-l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l 207 (836)
+|++++|+++|+ +...+..++..|+.++....+. ++..+. .++++|.+++.||+++++++++|+|..+++.|++
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~----~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~ 152 (397)
T COG0475 77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLI----AALFLGAALALSSTAIVLKILMELGLLKTREGQL 152 (397)
T ss_pred cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccChH----HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 999999999999 8888888888998888655543 444433 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHH
Q 003256 208 AISSALLHEIVGLLRLL-MAPLSKAKYR--SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGA 284 (836)
Q Consensus 208 ~ls~a~v~Di~~~~ll~-~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~ 284 (836)
++++++++|+.++++++ ...+..++.. ..++.......+|.++..+..|++..|+.|+..+. +.+|.....++.++
T Consensus 153 ~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l~i~ 231 (397)
T COG0475 153 ILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVLLLV 231 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHH
Confidence 99999999999999999 7776644332 22345555666666666666678888888876542 34788999999999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHhhccCCCCch-hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHH
Q 003256 285 LVMAVACDSMRVNYTIGAAMLGIVIPAGPPLG-SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMA 363 (836)
Q Consensus 285 l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~-~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~ 363 (836)
+.+++++|.+|+|+++|||++|+++++. +.+ ++++++++++.+++|+|+||+.+|+.+|+..+. ..+..+..++.+
T Consensus 232 l~~a~l~e~~gls~ilGAFlaGl~ls~~-~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~--~~~~~~l~~~~~ 308 (397)
T COG0475 232 LGAAYLAELLGLSMILGAFLAGLLLSES-EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLL--ENLLLILLLVAL 308 (397)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHhccc-ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHh--ccHHHHHHHHHH
Confidence 9999999999999999999999999998 455 799999999987799999999999999999987 334446677778
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHhccc
Q 003256 364 AYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNP 442 (836)
Q Consensus 364 ~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p 442 (836)
..++|++++++.++..|.+.|++...|+.+.++|+++++.++.+.+ +.++++.++.++.+++++|.+.+.+.+.+++.
T Consensus 309 ~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~ 386 (397)
T COG0475 309 AILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKR 386 (397)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999998887 67888999988888888777777677766643
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=7.6e-39 Score=376.58 Aligned_cols=377 Identities=13% Similarity=0.119 Sum_probs=311.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhh
Q 003256 49 PVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTV 128 (836)
Q Consensus 49 ~~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gl 128 (836)
..++++++++++++.+++.+++|+++|.+++++++|+++||+++|.++. +..+..+.++++|+++++|..|+
T Consensus 5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~--------~~~~~~~~i~~l~L~~iLF~~Gl 76 (562)
T PRK05326 5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF--------DNYPLAYLVGNLALAVILFDGGL 76 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc--------CcHHHHHHHHHHHHHHHHHcCcc
Confidence 3578899999999999999999999999999999999999999986431 23567899999999999999999
Q ss_pred ccCcchhhhccchhhHHHHHHHHHHHHHHHHHH-HHhhccccccchHHHHHHHhhccccHHHHHHHHHhccc-cCChhHH
Q 003256 129 KMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVG-HREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKL-LNSELGQ 206 (836)
Q Consensus 129 e~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~-~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l-~~s~~g~ 206 (836)
|+|++.+|+.+++++.++..++++|++++...+ ++++..+ ..++++|++++.||++++.++++|.|+ +++++++
T Consensus 77 ~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~----~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~ 152 (562)
T PRK05326 77 RTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLDW----LEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVAS 152 (562)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH----HHHHHHhhhhccCchHHHHHHHhccCCCcchhHHh
Confidence 999999999999999999999999998855444 4444333 357999999999999999999999995 7999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhcccc-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 003256 207 LAISSALLHEIVGLLRLL-MAPLSKAKY-R--SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILT 282 (836)
Q Consensus 207 l~ls~a~v~Di~~~~ll~-~~~~~~~~~-~--~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~ 282 (836)
++.+++.+||.++++++. +..+...+. . ...+..++..+++.++.+++.++++.|+++|... ..++.+..++++
T Consensus 153 ~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~--~~~~~~~i~~l~ 230 (562)
T PRK05326 153 TLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIAL--PAEGLYPILVLA 230 (562)
T ss_pred HhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHHHHH
Confidence 999999999999998887 655443222 1 2223344555666777788888999999998743 124567888888
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Q 003256 283 GALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIM 362 (836)
Q Consensus 283 ~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~ 362 (836)
++++++++++.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|+..+. ...+...++.++
T Consensus 231 ~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~-~~~~~~l~i~~~ 309 (562)
T PRK05326 231 GALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLL-DIALPALLLALF 309 (562)
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999986555555666666668899999999999999998775 222332333345
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccc-hhhHHHHHHHHHHHHHhHHHHHHHhcc
Q 003256 363 AAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELID-VQTYSVLVLTNLAVTAIVTPLISVYYN 441 (836)
Q Consensus 363 ~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~-~~~~~~~vl~~lv~t~i~~plv~~l~~ 441 (836)
+.+++|+++++++++.+++++||++.+||. ++||.++++++..+...++.+ +..|.++.+++++++++.++.++.+.+
T Consensus 310 l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~ 388 (562)
T PRK05326 310 LILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAAR 388 (562)
T ss_pred HHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHH
Confidence 667899999999999999999999999995 899999999999999999886 466788888888888888877777664
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.2e-38 Score=358.99 Aligned_cols=370 Identities=21% Similarity=0.368 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhh
Q 003256 57 LAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIP 136 (836)
Q Consensus 57 lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~ 136 (836)
++++.+.+.+.++||+++|.+++|+++|+++||..++..+. . ....+.++++|+.+++|.+|+|+|.+.+|
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~-------~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~ 73 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP-------D--NPSFELLAEIGLAFLLFEAGLELDIKELR 73 (380)
T ss_dssp ------------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG---
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc-------h--hhHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 34555667777899999999999999999999998875331 1 36778899999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHH-HHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHHH
Q 003256 137 RTIKKTYSVSLTVFIVPLLI-SLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLH 215 (836)
Q Consensus 137 ~~~~~~~~ia~~~~l~p~~l-g~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~ 215 (836)
+++++++.+++.++++|+++ ++.+++++. ....+...++++|.+++.||++++.++++|.+..+++.++++++++++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~ 152 (380)
T PF00999_consen 74 RNWRRALALGLVGFLLPFILVGFLLSFFLF-ILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVIN 152 (380)
T ss_dssp -----------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTT
T ss_pred cccccccccccceeeehhhHHHHHHHHhhc-cchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhh
Confidence 99999999999999999998 766664321 1111122469999999999999999999998889999999999999999
Q ss_pred HHHHHHHHH-HHHhhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHH
Q 003256 216 EIVGLLRLL-MAPLSKAKYR---SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVAC 291 (836)
Q Consensus 216 Di~~~~ll~-~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~~~~ia 291 (836)
|+++++++. .....+.... ......++..+...++.+++.+++..|+.++. ++.++.+..+++++++..++++
T Consensus 153 d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a 229 (380)
T PF00999_consen 153 DIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLA 229 (380)
T ss_dssp TTTTTTTT------------------------------------------------------------------------
T ss_pred ccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhcccc
Confidence 999998888 6655421111 11112222233333333444444444444442 2446788899999999999999
Q ss_pred HHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccc-hhhHHHHHHHHHHHHHHHHHH
Q 003256 292 DSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSIN-NWRAFAALELIIMAAYIGKVV 370 (836)
Q Consensus 292 e~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~ 370 (836)
|.+|.|+++|+|++|+++++. +.++++.++++++.++++.|+||+++|+++|++.+. +...+.....+.+..+++|++
T Consensus 230 ~~~g~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~ 308 (380)
T PF00999_consen 230 EILGLSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFI 308 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhc
Confidence 999999999999999999955 777789999999988999999999999999988873 234555566666677789999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHhc
Q 003256 371 ASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYY 440 (836)
Q Consensus 371 ~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~ 440 (836)
++++.+++.|.++||+..+|+.|++||+++++++..+.+.|+++++.+++++.++++++.+.|+.++.+.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 309 GVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp --------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred eeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998888887777654
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.9e-34 Score=310.05 Aligned_cols=268 Identities=22% Similarity=0.344 Sum_probs=229.9
Q ss_pred HHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhcc
Q 003256 60 SISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTI 139 (836)
Q Consensus 60 ~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~ 139 (836)
+++.+++.++||+++|++++++++|+++||+++|.+++ .+.++.++++|+.+++|.+|+|+|++.+|+++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~----------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN----------VEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC----------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 46778899999999999999999999999999987542 36799999999999999999999999999999
Q ss_pred chhhHHHHHHHHHH-HHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHH
Q 003256 140 KKTYSVSLTVFIVP-LLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIV 218 (836)
Q Consensus 140 ~~~~~ia~~~~l~p-~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~ 218 (836)
|++..+++.++++| +.+++.++++++..+. .++++|++++.||++++.++++|+|+.+++.|+++++++++||++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~ 147 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGLALG----AAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIA 147 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHH
Confidence 99999999999999 6677767776654333 579999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHhhcccc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 003256 219 GLLRLL-MAPLSKAKY-R-SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACDSMR 295 (836)
Q Consensus 219 ~~~ll~-~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G 295 (836)
+++++. ......+.. + ....+.+...+++.++.+++.++...|+.++.++.++ +|.+...++.+++.+++++|.+|
T Consensus 148 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~g 226 (273)
T TIGR00932 148 VVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLG 226 (273)
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHhC
Confidence 999988 665543221 1 2233444445555666677888999999998776433 57888889999999999999999
Q ss_pred hhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 003256 296 VNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQID 344 (836)
Q Consensus 296 ~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~id 344 (836)
.|+++|||++|+++++. +.++++.++++++. ++|.|+||+++|+++|
T Consensus 227 ~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 227 LSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred CcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 99999999999999997 56788999999998 9999999999999986
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-33 Score=280.92 Aligned_cols=377 Identities=19% Similarity=0.275 Sum_probs=305.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHH
Q 003256 45 SSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVF 124 (836)
Q Consensus 45 ~~~l~~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF 124 (836)
+++.|+ +..+..-+.++++++.+..|+++|+.+||+++|++.||.--|...+ ......++++|++++||
T Consensus 2 ~h~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad----------~~La~~LAelGViLLmF 70 (408)
T COG4651 2 HHDTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVAD----------QTLAPELAELGVILLMF 70 (408)
T ss_pred CCCchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccc----------hhHHHHHHHhhHHHHHH
Confidence 344553 4455566778899999999999999999999999999976665432 34455899999999999
Q ss_pred HhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChh
Q 003256 125 INTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSEL 204 (836)
Q Consensus 125 ~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~ 204 (836)
-+|+++.++++...+..++.-++.++.+...+|.++++.+++.+. ..+++|.++|..|+.|+.+.|+|.++.+++.
T Consensus 71 gvGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~~----~glvfGlaLS~aSTVvllraLqEr~lidt~r 146 (408)
T COG4651 71 GVGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSFG----TGIVFGLALSVASTVVLLRALEERQLIDTQR 146 (408)
T ss_pred hcchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCcc----cceeeeehhhhHHHHHHHHHHHHhccccccC
Confidence 999999999998777666667777787788888888888876655 4699999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhcc--cc--h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCch
Q 003256 205 GQLAISSALLHEIVGLLRLL-MAPLSKA--KY--R-----SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKD 274 (836)
Q Consensus 205 g~l~ls~a~v~Di~~~~ll~-~~~~~~~--~~--~-----~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e 274 (836)
||++++.-+++|+..++.+. ..++++- .. . ....+...+...|..++.++.|++..|+..+.... ..+|
T Consensus 147 G~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-GsrE 225 (408)
T COG4651 147 GRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSRE 225 (408)
T ss_pred ceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHH
Confidence 99999999999999988877 5444321 11 1 12234566788899999999999999999987432 2478
Q ss_pred HHHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhH
Q 003256 275 FYIVAILTGALVMAVA-CDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRA 353 (836)
Q Consensus 275 ~~~~~il~~~l~~~~i-ae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~ 353 (836)
.+...++++++..++- ++.+|++..+|||++|+++.+. ..+++..+..-++ .+.|.-+||+++||..|+..+. .+.
T Consensus 226 lf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~-~~p 302 (408)
T COG4651 226 LFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILI-QQP 302 (408)
T ss_pred HHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhh-cch
Confidence 8999999999877755 5789999999999999999988 6777766665555 7889999999999999998775 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHH
Q 003256 354 FAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVT 433 (836)
Q Consensus 354 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~ 433 (836)
+. +...+.+..++|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.+++++.-- -++++.-+.+++..
T Consensus 303 l~-vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr-~LvlagailsIl~n 380 (408)
T COG4651 303 LA-VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGR-DLVLAGAILSILLN 380 (408)
T ss_pred HH-HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHH-HHHHHHHHHHHHHh
Confidence 43 33444556789999999999999999999999999999999999999999999999985444 44555555588888
Q ss_pred HHHHHhccc
Q 003256 434 PLISVYYNP 442 (836)
Q Consensus 434 plv~~l~~p 442 (836)
|+.....++
T Consensus 381 Pllf~~~dr 389 (408)
T COG4651 381 PLLFALLDR 389 (408)
T ss_pred HHHHHHHHH
Confidence 887765543
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=1.4e-26 Score=269.59 Aligned_cols=366 Identities=12% Similarity=0.108 Sum_probs=259.8
Q ss_pred ccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhc-ccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHH
Q 003256 37 INLDEEAVSSVLPVVMLQVSLAFSISQILYILLR-PLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAAS 115 (836)
Q Consensus 37 i~~~~~pl~~~l~~~llqi~lil~~s~l~~~ll~-rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~ 115 (836)
.|..-++-+.++. ++.++..+++..++..+++ |+.+|..+.++++|+++||++++.++.. ++ .......++ ++
T Consensus 2 ~w~~l~~~~~~l~--~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~-~~--g~~d~i~le-It 75 (810)
T TIGR00844 2 IWEQLEVTKAHVA--YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPL-SW--GNTDSITLE-IS 75 (810)
T ss_pred CcccccccchhhH--HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChh-hc--ccchHHHHH-HH
Confidence 3666666666663 3333444444445555555 9999999999999999999988864311 00 001223444 99
Q ss_pred HHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHH
Q 003256 116 TIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAIS 195 (836)
Q Consensus 116 ~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~ 195 (836)
++++++.+|.+|++++.+.+++.++..+.+.+.++.+.+++++++++++...+. +..++++|+++++|++.....+++
T Consensus 76 eIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~--~~~ALLLGAILAPTDPVLAssV~k 153 (810)
T TIGR00844 76 RILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLN--FPASLLMGACITATDPVLAQSVVS 153 (810)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHhhhcCCcHHHHHHHHh
Confidence 999999999999999999999999999999999999999998888876632222 235799999999999776777766
Q ss_pred ---hccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhc--ccc-h--hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 196 ---ELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLSK--AKY-R--SV-AIRIELSLCAMSLFTFLVLWPTIQWIIRR 265 (836)
Q Consensus 196 ---el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~--~~~-~--~~-~~~~~~~~v~~~~~~~~v~r~~~~~i~~r 265 (836)
..+ ++.++..++.+++.+||.++++++. .+.+.. +.. . .. .+..++..++++++++++++.+..|++++
T Consensus 154 g~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~ 232 (810)
T TIGR00844 154 GTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRF 232 (810)
T ss_pred cccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233 5788999999999999999998776 433321 111 1 11 12233333444444555555555555544
Q ss_pred cCCCCC-CchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhh-HHHHHHHHHHHHHHHHHHHHhhccc
Q 003256 266 IPERKP-VKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSA-LVEKSEAILSNFFLPFFYIHVGQQI 343 (836)
Q Consensus 266 ~~~~~~-~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~-l~~kl~~~~~~~flPlFF~~~Gl~i 343 (836)
..+... ..+.++.+.++++++++.+++.+|.++++++|++|+++.+...+.++ -...+......++..++|+++|+.+
T Consensus 233 l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L 312 (810)
T TIGR00844 233 AEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSIL 312 (810)
T ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 322111 13556777788888889999999999999999999999987443322 2233555667789999999999999
Q ss_pred cccccch----hhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhhhhhhHHHHHHhhhhhccc
Q 003256 344 DIYSINN----WRAFAALELIIMAAYIGKVVASILATTCF--RTSFRNALLFSCFVNIKGVSELVTFLRWRQREL 412 (836)
Q Consensus 344 dl~~l~~----~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~real~lg~~m~~rG~v~l~~~~~~~~~~i 412 (836)
....+.. ...|..+++.+++.++.|+.++++...+. ..+|+|++++|| .++||..++.++.++++.+.
T Consensus 313 ~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 313 PWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred CHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 8766541 13455555666677788988888764443 468999999999 69999999999999977654
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.95 E-value=9.1e-26 Score=262.40 Aligned_cols=366 Identities=11% Similarity=0.085 Sum_probs=257.6
Q ss_pred HHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchh
Q 003256 56 SLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMI 135 (836)
Q Consensus 56 ~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l 135 (836)
..+++++.....+++|+++|.+++++++|+++||..++.. ++.+ . +.+..+++.+++|..|+++|++.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~-------~~~~-~---~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPE-------VPLD-R---EIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCC-------CCCC-H---HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3445555667788999999999999999999998644321 0111 1 234558999999999999999999
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHHH
Q 003256 136 PRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLH 215 (836)
Q Consensus 136 ~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~ 215 (836)
+++++....+++.++++|++++....+++.. +. +..++++|+++|+||++++.+++++.+ .++++.+++.+++.+|
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~~-l~--~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllN 148 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWILG-IP--LALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLN 148 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc--HHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhc
Confidence 9999999999999999999987766655321 11 235799999999999999999999988 5788999999999999
Q ss_pred HHHHHHHHH-HHHhhcccc--h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHH
Q 003256 216 EIVGLLRLL-MAPLSKAKY--R-SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVAC 291 (836)
Q Consensus 216 Di~~~~ll~-~~~~~~~~~--~-~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~~~~ia 291 (836)
|..+++++. ...+..+.+ + ......++..++.++++++++..+..|+.++..+. +.....+++++.+++++++
T Consensus 149 D~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~lA 225 (525)
T TIGR00831 149 DGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFLLA 225 (525)
T ss_pred chHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHH
Confidence 999999998 665553211 2 22333333444445555666666677777553322 3456778888899999999
Q ss_pred HHhchhHHHHHHHHHhhccCCCCc-h--hh---HHHHHHHHHHHHHHHHHHHHhhccccccccchhh----H-----HHH
Q 003256 292 DSMRVNYTIGAAMLGIVIPAGPPL-G--SA---LVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWR----A-----FAA 356 (836)
Q Consensus 292 e~~G~~~~lGaf~aGl~i~~~~~~-~--~~---l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~----~-----~~~ 356 (836)
|.+|.|+++++|++|+++++..+. . .+ ..+.+-.....++.+++|+++|+++.......+. . +..
T Consensus 226 e~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~ 305 (525)
T TIGR00831 226 ERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILAL 305 (525)
T ss_pred HHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence 999999999999999999986433 1 11 1223444567889999999999998642111000 0 100
Q ss_pred ---HHHHHHHHHHHHHHHHHHHH--hh-----cCCChHHHHHHHHHhhhhhhHHHHHHhhhh-h---------ccccchh
Q 003256 357 ---LELIIMAAYIGKVVASILAT--TC-----FRTSFRNALLFSCFVNIKGVSELVTFLRWR-Q---------RELIDVQ 416 (836)
Q Consensus 357 ---~~~ii~~~~~~K~~~~~l~~--~~-----~~~~~real~lg~~m~~rG~v~l~~~~~~~-~---------~~ii~~~ 416 (836)
.+++.......|++.++... ++ .+++||+.+.++| .+.||.++++++...- . ...+-.-
T Consensus 306 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~ 384 (525)
T TIGR00831 306 FTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFL 384 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHH
Confidence 11122223345554433321 11 2478999999999 5899999999876321 1 1233345
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHhc
Q 003256 417 TYSVLVLTNLAVTAIVTPLISVYY 440 (836)
Q Consensus 417 ~~~~~vl~~lv~t~i~~plv~~l~ 440 (836)
++.++++++++++...||+++++-
T Consensus 385 ~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 385 AAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcC
Confidence 567778888888888888888865
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.3e-22 Score=229.80 Aligned_cols=376 Identities=15% Similarity=0.154 Sum_probs=286.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhc
Q 003256 50 VVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVK 129 (836)
Q Consensus 50 ~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle 129 (836)
..++++.+++.++.+...+.+|+..|.++.+++.|++.||.+++..+. .....-+.+..+++..++|..|++
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhc
Confidence 357788889899999999999999999999999999999988876431 011122233389999999999999
Q ss_pred cCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHH
Q 003256 130 MDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAI 209 (836)
Q Consensus 130 ~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~l 209 (836)
+|.+.++++++....++..+++++++......+++...+. ...++.+|+++|+|++.++.+++++.+ .+.++.++..
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~--~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~ 154 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIP--LAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILE 154 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh--HHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHH
Confidence 9999999999999999999999999887777777743222 335799999999999999999999977 6899999999
Q ss_pred HHHHHHHHHHHHHHH-HHHhhcccch---hHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHH
Q 003256 210 SSALLHEIVGLLRLL-MAPLSKAKYR---SVAIRIEL----SLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAIL 281 (836)
Q Consensus 210 s~a~v~Di~~~~ll~-~~~~~~~~~~---~~~~~~~~----~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il 281 (836)
+++.+||..+++++. ......+.+. ......++ ..++.+++.+++.+++++++.+|.. . .......+.+
T Consensus 155 gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~--~-~~~~~~~i~L 231 (429)
T COG0025 155 GESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGW--T-SPLLETLLTL 231 (429)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--c-chHHHHHHHH
Confidence 999999999999998 6655432221 22222333 3333444444555555555444421 1 1456778888
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhcc---C--CCCch-hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHH
Q 003256 282 TGALVMAVACDSMRVNYTIGAAMLGIVIP---A--GPPLG-SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFA 355 (836)
Q Consensus 282 ~~~l~~~~iae~~G~~~~lGaf~aGl~i~---~--~~~~~-~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~ 355 (836)
...+..+.++|.+|.+++++.+++|++.. . ..+.. +...+.+......++.-+.|+..|++++...+. ...+.
T Consensus 232 ~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~-~~~~~ 310 (429)
T COG0025 232 LLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLL-ALGLL 310 (429)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HhhHH
Confidence 99999999999999999999999999774 1 11111 233344555667889999999999999988775 23355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC------CChHHHHHHHHHhhhhhhHHHHHHhhhhh------ccccchhhHHHHHH
Q 003256 356 ALELIIMAAYIGKVVASILATTCFR------TSFRNALLFSCFVNIKGVSELVTFLRWRQ------RELIDVQTYSVLVL 423 (836)
Q Consensus 356 ~~~~ii~~~~~~K~~~~~l~~~~~~------~~~real~lg~~m~~rG~v~l~~~~~~~~------~~ii~~~~~~~~vl 423 (836)
..+++++..+++|++++++..+..+ .+++|++.++|. ++||.++++++..... ...+-.-.+.+++.
T Consensus 311 ~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~ 389 (429)
T COG0025 311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIPLELPGPARELILFIVFLVILF 389 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHH
Confidence 5667777888999999999988743 799999999994 9999999999887542 22444456777778
Q ss_pred HHHHHHHhHHHHHHHhcc
Q 003256 424 TNLAVTAIVTPLISVYYN 441 (836)
Q Consensus 424 ~~lv~t~i~~plv~~l~~ 441 (836)
++++.+...+|+.+++..
T Consensus 390 Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 390 SLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred HHHHHhhhHHHHHHHhcc
Confidence 888888888888887664
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.3e-22 Score=212.32 Aligned_cols=372 Identities=12% Similarity=0.124 Sum_probs=295.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhh
Q 003256 48 LPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINT 127 (836)
Q Consensus 48 l~~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~G 127 (836)
...+++.-.+++.++.+.+.+..|+|.|..+-.+..|++.|.-++|.++. ++.+....++++++++++|..|
T Consensus 5 ~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f--------dNy~~Ay~vg~lALaiILfdgG 76 (574)
T COG3263 5 INLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF--------DNYPFAYMVGNLALAIILFDGG 76 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc--------CccHHHHHHHHHHHHHHhhcCc
Confidence 33455555578888999999999999999999999999999999987652 2457778899999999999999
Q ss_pred hccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHh-hccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHH
Q 003256 128 VKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHRE-QYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQ 206 (836)
Q Consensus 128 le~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l-~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 206 (836)
+..+++.+|...++++.++..|++++-.+....++++ ...|. +++++|+++..|+.+.+..+|.+.+ +|.+++.
T Consensus 77 ~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wl----e~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~s 151 (574)
T COG3263 77 FGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDWL----EGLLIGAIVGSTDAAAVFSLLGGKN-LNERVAS 151 (574)
T ss_pred cCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHH----HHHHHHHhhccccHHHHHHHHccCC-hhhhhhh
Confidence 9999999999999999999999998887765555544 44443 6799999999999999999998887 5889999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhccc-ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Q 003256 207 LAISSALLHEIVGLLRLL-MAPLSKAK-YR--SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILT 282 (836)
Q Consensus 207 l~ls~a~v~Di~~~~ll~-~~~~~~~~-~~--~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~ 282 (836)
+..-++--||.+++++.. ++.+...+ ++ +..+..++.-+++.++.++....+..|+++|..-+ +..+..++++
T Consensus 152 tLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil~la 228 (574)
T COG3263 152 TLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPILALA 228 (574)
T ss_pred hEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHHHH
Confidence 999999999999998887 65554333 32 33333455667788888899999999999997332 5678889999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch-hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 003256 283 GALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLG-SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELII 361 (836)
Q Consensus 283 ~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~-~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii 361 (836)
..+....+++.+|.|++++.+++|+++.|.+-.. +.+.+-.+-+ .++..-+.|...|+..+++.+. ......+.+.+
T Consensus 229 ~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~-~iavPailL~l 306 (574)
T COG3263 229 GGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLL-PIAIPAILLSL 306 (574)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhh-HhhHHHHHHHH
Confidence 9999999999999999999999999999984333 3445555555 6777778899999999998876 23344455556
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccc-----hhhHHHHHHHHHHHHHhHHHHH
Q 003256 362 MAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELID-----VQTYSVLVLTNLAVTAIVTPLI 436 (836)
Q Consensus 362 ~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~-----~~~~~~~vl~~lv~t~i~~plv 436 (836)
...+++|.+++|+...-++.+++|.++++| -+-||.++++++....-.|.-+ +-.|-++.++.+++....+|..
T Consensus 307 ~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~~~a 385 (574)
T COG3263 307 WMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPWAA 385 (574)
T ss_pred HHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcchHHH
Confidence 677889999999999999999999999999 4899999999999876655433 3334444455555544455554
Q ss_pred HH
Q 003256 437 SV 438 (836)
Q Consensus 437 ~~ 438 (836)
++
T Consensus 386 ~~ 387 (574)
T COG3263 386 KK 387 (574)
T ss_pred Hh
Confidence 43
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.90 E-value=1.8e-21 Score=226.26 Aligned_cols=366 Identities=12% Similarity=0.103 Sum_probs=255.5
Q ss_pred HHHHHHHh-ccc-CCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhcc
Q 003256 62 SQILYILL-RPL-KQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTI 139 (836)
Q Consensus 62 s~l~~~ll-~rl-~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~ 139 (836)
+.+...+. |+. ++|..+..++.|+++|+...+... ....-+. -+.+-.+.+..++|..|+++|.+.++++.
T Consensus 21 ~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~-~~~~~l~------~~lf~~~~LPpIlFe~g~~l~~~~f~~n~ 93 (559)
T TIGR00840 21 AKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH-IDPPTLD------SSYFFLYLLPPIVLDAGYFMPQRNFFENL 93 (559)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC-CccCCcC------HHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 33333333 344 499999999999999986433210 0000111 23455577889999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcc--c---cccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHH
Q 003256 140 KKTYSVSLTVFIVPLLISLLVGHREQYK--I---PRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALL 214 (836)
Q Consensus 140 ~~~~~ia~~~~l~p~~lg~~~~~~l~~~--~---~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v 214 (836)
+..+.+++.+++++.++.....+++... . ..++..++++|+++|+|++.++..++++.+ .+.++..++.+++++
T Consensus 94 ~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESll 172 (559)
T TIGR00840 94 GSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLL 172 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhh
Confidence 9999999999999988766655543211 1 112335799999999999999999999998 588999999999999
Q ss_pred HHHHHHHHHH-HHHhhcc--cc-hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHH
Q 003256 215 HEIVGLLRLL-MAPLSKA--KY-RSV----AIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALV 286 (836)
Q Consensus 215 ~Di~~~~ll~-~~~~~~~--~~-~~~----~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~ 286 (836)
||.++++++. +..+... +. ... .+..++...+..++++++++.+..++.++.... +.....+++++.++
T Consensus 173 NDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~~l~l~~~yl 249 (559)
T TIGR00840 173 NDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEPLFVFLISYL 249 (559)
T ss_pred hccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHH
Confidence 9999999998 6655421 11 111 111111112235566667777777777776432 24566777888889
Q ss_pred HHHHHHHhchhHHHHHHHHHhhccCCC--Cchh---hHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 003256 287 MAVACDSMRVNYTIGAAMLGIVIPAGP--PLGS---ALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELII 361 (836)
Q Consensus 287 ~~~iae~~G~~~~lGaf~aGl~i~~~~--~~~~---~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii 361 (836)
+++++|.+|.|++++.+++|+++.+.. ...+ .-.+.+......++..+.|+++|+.+.... ..+ .|...++.+
T Consensus 250 ~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~~~-~~~~i~~~l 327 (559)
T TIGR00840 250 SYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-HEW-NWAFVVATL 327 (559)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hhH-HHHHHHHHH
Confidence 999999999999999999999996531 1222 223334445577888999999999763221 112 344444445
Q ss_pred HHHHHHHHHHHHHHHhh------cCCChHHHHHHHHHhhhhhhHHHHHHhhhhhc-----cccchhhHHHHHHHHHHHHH
Q 003256 362 MAAYIGKVVASILATTC------FRTSFRNALLFSCFVNIKGVSELVTFLRWRQR-----ELIDVQTYSVLVLTNLAVTA 430 (836)
Q Consensus 362 ~~~~~~K~~~~~l~~~~------~~~~~real~lg~~m~~rG~v~l~~~~~~~~~-----~ii~~~~~~~~vl~~lv~t~ 430 (836)
++.++.|+++++..+.. .+.+++|.+.++| .+.||.++++++....+. +.+-..++.++++++++++.
T Consensus 328 ~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~ 406 (559)
T TIGR00840 328 SFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGG 406 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHh
Confidence 56678899888876543 3579999999999 589999999988754332 23334455566677788888
Q ss_pred hHHHHHHHhcc
Q 003256 431 IVTPLISVYYN 441 (836)
Q Consensus 431 i~~plv~~l~~ 441 (836)
.++|+++++.-
T Consensus 407 T~~pl~~~L~l 417 (559)
T TIGR00840 407 TIKPLVEVLKV 417 (559)
T ss_pred hHHHHHHHhCC
Confidence 88999988753
No 16
>PRK11175 universal stress protein UspE; Provisional
Probab=99.83 E-value=1.3e-19 Score=198.07 Aligned_cols=272 Identities=10% Similarity=0.019 Sum_probs=173.3
Q ss_pred eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhccccccc-cc-ccCchHH-HHHHHHHHhhcC
Q 003256 464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKT-KA-MANSTDH-IMRAVIKYAEGS 540 (836)
Q Consensus 464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~-~~-~~~~~~~-i~~af~~~~~~~ 540 (836)
|||+|++.++.....++.+..++... ..+++++|+++......+........+. .. .....++ +.+..+.+.
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 79 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQRN--GGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYL--- 79 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHHhc--CCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 79999999999999999988887443 4678999987533211111100000000 00 0001111 222222222
Q ss_pred CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCC
Q 003256 541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSN 620 (836)
Q Consensus 541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~ 620 (836)
..++.++..... .++.++.|++.|+++++||||||+|++++. ++..+|++.+++++++||||.++. .+..
T Consensus 80 ~~~~~~~~~v~~--~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~---~~~~~gs~~~~l~~~~~~pvlvv~-~~~~---- 149 (305)
T PRK11175 80 DAGIPIEIKVVW--HNRPFEAIIQEVIAGGHDLVVKMTHQHDKL---ESVIFTPTDWHLLRKCPCPVLMVK-DQDW---- 149 (305)
T ss_pred hcCCceEEEEec--CCCcHHHHHHHHHhcCCCEEEEeCCCCcHH---HhhccChhHHHHHhcCCCCEEEec-cccc----
Confidence 234555554432 357899999999999999999999987543 445889999999999999997643 3211
Q ss_pred CCCCCCcccEEEEEccCCcch-------HHHHHHHHHhhcCC-CeEEEEEEEeecCCc---------ccchhhhh---hH
Q 003256 621 SAKPANFCYNVAVFFIGGPDD-------REAMALVSHMSSNP-GVRITLSRIYLEENL---------VEEEDDKC---LD 680 (836)
Q Consensus 621 ~~~~~~~~~~I~v~f~Gg~dd-------reAL~~A~rmA~~~-~~~Ltvvrv~~~~~~---------~~~~~e~~---~d 680 (836)
...++|+++.+|++.+ +.|+++|.++|+.. +++++++|+.+.... ..++.++. ..
T Consensus 150 -----~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (305)
T PRK11175 150 -----PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQH 224 (305)
T ss_pred -----CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHH
Confidence 1246999999998753 67999999999987 999999999763211 01111111 12
Q ss_pred HHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhcc
Q 003256 681 EVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASA 759 (836)
Q Consensus 681 ~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~ 759 (836)
++.++++.++... . ..+..+..|.....+++.. ..++||+|||++++. |+.+| -+|..++.++.
T Consensus 225 ~~~l~~~~~~~~~--~--~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~------~~~~~----llGS~a~~v~~- 289 (305)
T PRK11175 225 LLAMKALRQKFGI--D--EEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRT------GLSAA----FLGNTAEHVID- 289 (305)
T ss_pred HHHHHHHHHHhCC--C--hhheeeccCCHHHHHHHHHHHhCCCEEEECCCccC------CCcce----eecchHHHHHh-
Confidence 2345555544311 1 1112233343222222222 267999999999887 88776 79999999996
Q ss_pred CCCCCcceEEEEee
Q 003256 760 DFAEGMVSVLVIQS 773 (836)
Q Consensus 760 d~~~~~~SvLvvqq 773 (836)
.++++||||+.
T Consensus 290 ---~~~~pVLvv~~ 300 (305)
T PRK11175 290 ---HLNCDLLAIKP 300 (305)
T ss_pred ---cCCCCEEEEcC
Confidence 58899999974
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.74 E-value=4.2e-16 Score=161.42 Aligned_cols=348 Identities=13% Similarity=0.111 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccC
Q 003256 52 MLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMD 131 (836)
Q Consensus 52 llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d 131 (836)
...-+.+.+++..--.+=+++-+...+--.+.|+++||++++....+. + .+.......++.+-+..-.|.++.|+.
T Consensus 16 ~~~g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~-w---gn~d~it~ei~RvvLcvqvfava~eLP 91 (467)
T KOG4505|consen 16 AASGGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS-W---GNKDYITYEISRVVLCVQVFAVAMELP 91 (467)
T ss_pred HHHhhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcc-c---cCcchhhhhhhhhhHhHHHHHHHHhcc
Confidence 333344455555555555677777777778999999999988743210 0 112345556888889999999999999
Q ss_pred cchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccc---cCChhHHHH
Q 003256 132 KGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKL---LNSELGQLA 208 (836)
Q Consensus 132 ~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l---~~s~~g~l~ 208 (836)
-..+.++++..+.+-+.-++.-+++.++..|.+.+... ...++.++++++.|++.....+..+-+. .+.++..+.
T Consensus 92 r~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~ln--f~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL 169 (467)
T KOG4505|consen 92 RAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNLN--FLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLL 169 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHH
Confidence 99999999998887777777777777777776654443 2246999999999996666666655433 455677789
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhc-ccc---h-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHH
Q 003256 209 ISSALLHEIVGLLRLL-MAPLSK-AKY---R-----SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIV 278 (836)
Q Consensus 209 ls~a~v~Di~~~~ll~-~~~~~~-~~~---~-----~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~ 278 (836)
.+++-.||.+++.++. .+-+.. ... . ...+......++++.+++++.|..+.+..++.--+ .|+++.
T Consensus 170 ~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid---~eSfl~ 246 (467)
T KOG4505|consen 170 AAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLID---RESFLI 246 (467)
T ss_pred HHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---HHHHHH
Confidence 9999999999998887 444322 111 1 12223333344456666667676666665553322 588999
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhH-HHHHHHHHHHHHHHHHHHHhhccccccccchh----hH
Q 003256 279 AILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSAL-VEKSEAILSNFFLPFFYIHVGQQIDIYSINNW----RA 353 (836)
Q Consensus 279 ~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l-~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~----~~ 353 (836)
+-+++++.++.+.+.+|.+-.+-.|.||++++.+..+.++. ..++..+.+.++.-.||++.|..++++.++.. ..
T Consensus 247 ~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~v 326 (467)
T KOG4505|consen 247 FYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPV 326 (467)
T ss_pred HHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchH
Confidence 99999999999999999999999999999999887666543 44677788888999999999999999887622 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 003256 354 FAALELIIMAAYIGKVVASILATTCF--RTSFRNALLFSCFVNIKGVSELVTFLRWRQ 409 (836)
Q Consensus 354 ~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~real~lg~~m~~rG~v~l~~~~~~~~ 409 (836)
|-.+++-+.+.+.-|+-++++.-.+. =.+|||++++|. .+|.|.-++..+..+..
T Consensus 327 wrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 327 WRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred HHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence 43333333333334554444432211 137999999999 69999999888877653
No 18
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.72 E-value=7.1e-15 Score=162.62 Aligned_cols=300 Identities=13% Similarity=0.185 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256 110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS 183 (836)
Q Consensus 110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls 183 (836)
....+.+.-..+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-.. +..... ...--+|+ -+
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~----~n~~~~---~~~~GW~I-p~ 133 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVA----VNLAGG---GALRGWAI-PT 133 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHH----HhCCch---hhhhhhhh-hh
Confidence 445566677788999999999664432 222333 35677888888854332 211111 01122332 35
Q ss_pred cccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 184 KCAYPVLVDAISELKL-LNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW 261 (836)
Q Consensus 184 ~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~ 261 (836)
.||.+....+|..+|. .++.++...++.|++||+.++++++ +++ ++ ....+.......+ ++. |
T Consensus 134 ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt---~~--i~~~~L~~a~~~~--~~l--------~ 198 (423)
T PRK14853 134 ATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT---SE--LNLEALLLALVPL--ALF--------W 198 (423)
T ss_pred hhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC---CC--CCHHHHHHHHHHH--HHH--------H
Confidence 5888888999999874 4889999999999999999999998 662 11 1222222222111 111 2
Q ss_pred HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-----------CchhhHHHHHHHHHHHH
Q 003256 262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP-----------PLGSALVEKSEAILSNF 330 (836)
Q Consensus 262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~-----------~~~~~l~~kl~~~~~~~ 330 (836)
+.+|. ++++.+.++++. +++.+..+..|+|+.+|+|++|+++|..+ +..+++++++++++..+
T Consensus 199 ~l~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ 272 (423)
T PRK14853 199 LLVQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGV 272 (423)
T ss_pred HHHHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHH
Confidence 22332 234456666553 36677889999999999999999999521 22467999999999999
Q ss_pred HHHHH-HHHhhccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhh
Q 003256 331 FLPFF-YIHVGQQIDI-YSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGV 398 (836)
Q Consensus 331 flPlF-F~~~Gl~idl-~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~ 398 (836)
++|+| |+..|.++|. ..+.+...-.....+++..++||.+|.+..++.. +++|++-..+|++-+.-=+
T Consensus 273 ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFT 352 (423)
T PRK14853 273 AVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFT 352 (423)
T ss_pred HHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999 9999999986 4341111112455667777889999988877653 4689999999997667778
Q ss_pred HHHHHHhhhhh-cc-ccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 003256 399 SELVTFLRWRQ-RE-LIDVQTYSVLVLTNLAVTAIVTPLISVY 439 (836)
Q Consensus 399 v~l~~~~~~~~-~~-ii~~~~~~~~vl~~lv~t~i~~plv~~l 439 (836)
+++-+++.+++ .. .++..-..+ .+..+++.++.--+++..
T Consensus 353 mSlFI~~LAf~~~~~~~~~aKigi-l~~S~~s~~~G~~~l~~~ 394 (423)
T PRK14853 353 VSLLIGELAFGGGSARDDAVKVGV-LTGSLIAALLASVLLRLR 394 (423)
T ss_pred HHHHHHHhhcCCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 89999999994 22 333333333 344444333333344433
No 19
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.7e-15 Score=169.82 Aligned_cols=381 Identities=13% Similarity=0.070 Sum_probs=254.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccC---CChhHHHHhhhceecccccccccccc-----ccccCCCchHHHHHHHHHHHHHHH
Q 003256 52 MLQVSLAFSISQILYILLRPLK---QPKFVSNTLSGIILGPSFLGRIKMFD-----AYVTGGRGMVFAQAASTIGGIYFV 123 (836)
Q Consensus 52 llqi~lil~~s~l~~~ll~rl~---~P~iv~~IlaGillGPs~Lg~~~~~~-----~~lfp~~~~~~l~~l~~iGl~~ll 123 (836)
++-+.+++.++.+.++++++.| +|.-+.-++.|+++|-.......... .+.|.+ +.+-.+-+--+.
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpii 110 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPII 110 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchhh
Confidence 4444556677888899999888 99999999999999964322211111 112221 122234445578
Q ss_pred HHhhhccCcchhhhccchhhHHHHHHHHHHHH-HHHHHHHHhhccccc--cchHHHHHHHhhccccHHHHHHHHHhcccc
Q 003256 124 FINTVKMDKGMIPRTIKKTYSVSLTVFIVPLL-ISLLVGHREQYKIPR--IHDQGISISFVASKCAYPVLVDAISELKLL 200 (836)
Q Consensus 124 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~-lg~~~~~~l~~~~~~--~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~ 200 (836)
|..|.+++.+.++++......+++.|..++.. +|.++.++....... +...++++|+++|.|++..+..++.|++ .
T Consensus 111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-v 189 (575)
T KOG1965|consen 111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-V 189 (575)
T ss_pred hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-C
Confidence 99999999999999999999999988777654 555554443211111 1234699999999999999999999999 5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccch-h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchH
Q 003256 201 NSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYR-S---VAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDF 275 (836)
Q Consensus 201 ~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~-~---~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~ 275 (836)
...+-.++-+++++||.++++++. +........+ + ..+..++........++...+.+-..+.++..-+ +....
T Consensus 190 d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~-~~~~l 268 (575)
T KOG1965|consen 190 DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLR-RTPSL 268 (575)
T ss_pred CcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHH
Confidence 788999999999999999999998 7665543322 1 1222222222222223333333344444444332 22456
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-----CchhhHHHHHHHHHHHHHHHHHHHHhhcc-ccccccc
Q 003256 276 YIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP-----PLGSALVEKSEAILSNFFLPFFYIHVGQQ-IDIYSIN 349 (836)
Q Consensus 276 ~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~-----~~~~~l~~kl~~~~~~~flPlFF~~~Gl~-idl~~l~ 349 (836)
+..+.+++....++++|.+|+++++..+++|+.+++.. +..+.-.+.+-.+...+.--+-|+++|+. ++.....
T Consensus 269 E~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~ 348 (575)
T KOG1965|consen 269 ESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHV 348 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccee
Confidence 78888889999999999999999999999999998752 22233333344445667777889999963 3444333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----------ChHHHHHHHHHhhhhhhHHHHHHhhhh-hc-----ccc
Q 003256 350 NWRAFAALELIIMAAYIGKVVASILATTCFRT----------SFRNALLFSCFVNIKGVSELVTFLRWR-QR-----ELI 413 (836)
Q Consensus 350 ~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~----------~~real~lg~~m~~rG~v~l~~~~~~~-~~-----~ii 413 (836)
+....++....++.+++|.+-++-.+.+.+. +.++-..+.|.-.-||.++++++.--. +. +.+
T Consensus 349 -~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i 427 (575)
T KOG1965|consen 349 -YKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTI 427 (575)
T ss_pred -eechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEE
Confidence 2222334555566678888877766665543 344445556654479999999876432 11 445
Q ss_pred chhhHHHHHHHHHHHHHhHHHHHHHhcc
Q 003256 414 DVQTYSVLVLTNLAVTAIVTPLISVYYN 441 (836)
Q Consensus 414 ~~~~~~~~vl~~lv~t~i~~plv~~l~~ 441 (836)
-..+..++++++++....+.|+++++-.
T Consensus 428 ~tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 428 FTTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred EEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 5566667777777878889999998863
No 20
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.49 E-value=2.5e-12 Score=139.88 Aligned_cols=270 Identities=13% Similarity=0.144 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256 110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS 183 (836)
Q Consensus 110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls 183 (836)
....+.+.-..+|.|.+|+|++.+.+. ++.||+ ..-++.|+++|.++=..+.. +... ..--+|+-+
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~-----~~~GW~IP~- 123 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPI-----TREGWAIPA- 123 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCc-----ccCcccccc-
Confidence 445566677788999999999876653 233443 34567788888754222111 1000 011122222
Q ss_pred cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW 261 (836)
Q Consensus 184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~ 261 (836)
.|+.+....++.=+| ..+..+....++-|++||+.++++++ +++- +....+......++.+ .+
T Consensus 124 ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt~-----~i~~~~L~~a~~~~~~----------l~ 188 (373)
T TIGR00773 124 ATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYTN-----DLSMAALLVAAVAIAV----------LA 188 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecCC-----CCCHHHHHHHHHHHHH----------HH
Confidence 233232233333222 25667788999999999999998888 6532 1222333232222211 12
Q ss_pred HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch----hhHHHHHHHHHHHHHHHHH-H
Q 003256 262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLG----SALVEKSEAILSNFFLPFF-Y 336 (836)
Q Consensus 262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~----~~l~~kl~~~~~~~flPlF-F 336 (836)
+.+|.. +++...+..+..++ .+++ ...|+|+.+|+|++|+++|...+.. +++++.+++.+..+++|+| |
T Consensus 189 ~~~~~~----v~~~~~y~~lgvll-W~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAF 262 (373)
T TIGR00773 189 VLNRCG----VRRLGPYMLVGVIL-WFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAF 262 (373)
T ss_pred HHHHcC----CchhhHHHHHHHHH-HHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334432 23444444443333 3333 7999999999999999999864443 3455556666889999999 9
Q ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHhh
Q 003256 337 IHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELVTFLR 406 (836)
Q Consensus 337 ~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~~~~~ 406 (836)
+..|.++|...+. .........+++..+++|.+|++..++.. +++|++-..+|++-+.-=++++-+.+.
T Consensus 263 anAGv~l~~~~~~-~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~L 341 (373)
T TIGR00773 263 ANAGVSLQGVSLN-GLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASL 341 (373)
T ss_pred HhcCeeeecCcch-hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875543 22223366777788899999999887653 468999999998766667889999999
Q ss_pred hhh
Q 003256 407 WRQ 409 (836)
Q Consensus 407 ~~~ 409 (836)
+++
T Consensus 342 Af~ 344 (373)
T TIGR00773 342 AFG 344 (373)
T ss_pred hcC
Confidence 884
No 21
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.42 E-value=1.9e-12 Score=122.81 Aligned_cols=131 Identities=18% Similarity=0.316 Sum_probs=97.7
Q ss_pred eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCCc
Q 003256 464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDA 543 (836)
Q Consensus 464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 543 (836)
|||+|++++++...+++.+..++.. .+.+++++|+++.+....+ +... . .....++.++.+.+..+. .+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~~~-~--~~~~~~~~~~~~~~~~~~--~g 69 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQLE-V--NVQRARKLLRQAERIAAS--LG 69 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----chhH-H--HHHHHHHHHHHHHHHhhh--cC
Confidence 6999999999999999999999864 4679999999987543321 1100 0 112234555555554332 35
Q ss_pred eeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 544 VTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 544 v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
+.+++.+..+ +++.++||+.|++.++|+||||+|++++. .+..+|+++++|++++||||+|+
T Consensus 70 ~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~---~~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 70 VPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSL---RDRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred CceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCc---cceecCchHHHHHhcCCCCEEEe
Confidence 6677776664 47999999999999999999999988544 34489999999999999999764
No 22
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.21 E-value=3.9e-09 Score=116.89 Aligned_cols=269 Identities=15% Similarity=0.146 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhh
Q 003256 109 VFAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVA 182 (836)
Q Consensus 109 ~~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~l 182 (836)
.....+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=. .+-.... ..--+|+-+
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~----~~n~~~~----~~~GWgIPm 138 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYF----FLNADTP----SQHGFGIPM 138 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHh----heecCCC----ccCcccccc
Confidence 3445567777789999999999876553 233333 3456778888875422 2211100 111222222
Q ss_pred ccccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 183 SKCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQ 260 (836)
Q Consensus 183 s~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~ 260 (836)
.|+.+....++.=+| ..++.+....++-|++||+.++++++ +++- +....+.....+++.++
T Consensus 139 -ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~-----~i~~~~L~~a~~~~~~l---------- 202 (438)
T PRK14856 139 -ATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYTT-----NLKFAWLLGALGVVLVL---------- 202 (438)
T ss_pred -HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecCC-----CCcHHHHHHHHHHHHHH----------
Confidence 233333333443333 24667888899999999999998888 6632 12333333333222211
Q ss_pred HHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc-------------------------
Q 003256 261 WIIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL------------------------- 315 (836)
Q Consensus 261 ~i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~------------------------- 315 (836)
++.+|.. ++....++++.+ +.-+....-|+|+.++..++|+++|..++.
T Consensus 203 ~~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (438)
T PRK14856 203 AVLNRLN----VRSLIPYLLLGV--LLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTK 276 (438)
T ss_pred HHHHHcC----CccccHHHHHHH--HHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhcccccccccc
Confidence 2233322 233344444443 334445678999999999999999975322
Q ss_pred -------------------hhhHHHHHHHHHHHHHHHHH-HHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 316 -------------------GSALVEKSEAILSNFFLPFF-YIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILA 375 (836)
Q Consensus 316 -------------------~~~l~~kl~~~~~~~flPlF-F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 375 (836)
.+++++.+++.+..+.+|+| |...|..++..... ..-.....+++..++||.+|.+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~--~~~pv~lGI~~GLvvGK~lGI~~~ 354 (438)
T PRK14856 277 EQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINL--EVDKVLLGVILGLCLGKPLGIFLI 354 (438)
T ss_pred chhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhh--ccCcHHHHHHHHHHhcchHHHHHH
Confidence 13455667777888999999 89999998754322 111234455566678899988887
Q ss_pred Hhhc----------CCChHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 003256 376 TTCF----------RTSFRNALLFSCFVNIKGVSELVTFLRWRQ 409 (836)
Q Consensus 376 ~~~~----------~~~~real~lg~~m~~rG~v~l~~~~~~~~ 409 (836)
++.. +++|++-...|++-+.-=++++-+++.+++
T Consensus 355 s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 355 TFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7653 568999999998766667889999999984
No 23
>PRK15456 universal stress protein UspG; Provisional
Probab=99.15 E-value=2.9e-10 Score=109.81 Aligned_cols=134 Identities=7% Similarity=0.038 Sum_probs=87.9
Q ss_pred ceeEEeecCCC--ChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchh-cccccccccccCchHHHHHHHHHHhhc
Q 003256 463 LRILCGIHDED--HISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVE-TYSTQKTKAMANSTDHIMRAVIKYAEG 539 (836)
Q Consensus 463 lriLvcv~~~~--~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~-~~~~~~~~~~~~~~~~i~~af~~~~~~ 539 (836)
-|||+|++.++ +...+++.+..++.. . ..++++|+++..... .... ..+.+ .. .....++..+.++.+.+.
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~ 76 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASL-SLHRFAADVR-RF-EEHLQHEAEERLQTMVSH 76 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCcccc-cccccccchh-hH-HHHHHHHHHHHHHHHHHH
Confidence 37999999984 788999998888643 2 379999998754211 1100 00000 00 011112223333333322
Q ss_pred C-CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256 540 S-NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 540 ~-~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI 609 (836)
. ...+.++..+.. ++..+.|++.|++.++||||||.|++ +. .+..+||+.++|++++||||.|
T Consensus 77 ~~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~-~~---~~~llGS~a~~v~~~a~~pVLv 140 (142)
T PRK15456 77 FTIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNP-SI---STHLLGSNASSVIRHANLPVLV 140 (142)
T ss_pred hCCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCC-Cc---cceecCccHHHHHHcCCCCEEE
Confidence 1 234566655544 58899999999999999999999986 32 2348999999999999999865
No 24
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.15 E-value=3.8e-10 Score=109.34 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=90.4
Q ss_pred eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhc--cccccc-ccccCchHHHHHHHHHHhhcC
Q 003256 464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVET--YSTQKT-KAMANSTDHIMRAVIKYAEGS 540 (836)
Q Consensus 464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~--~~~~~~-~~~~~~~~~i~~af~~~~~~~ 540 (836)
+||+|++.+++...+++.+..++.. ...+++++|+++..... +.... ...+.. .......++.++.+.+..+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 75 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT--KGQTIVLVHVHPPITSI-PSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-- 75 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC--CCCcEEEEEeccCcccC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 5899999999999999999887654 35789999998754221 11000 000000 0011122333333322211
Q ss_pred CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhh-HHHHHHhccCC--cceEEEEcCC
Q 003256 541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLH-GLNNNVLGYAP--CTVGIFVDKR 614 (836)
Q Consensus 541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~g-sv~~~Vl~~Ap--CsVgIlvdrg 614 (836)
...+.++..... ..+.++.|+++|++.++|+||||.|+++|. .+..+| ++.++|++++| |||.| |.+|
T Consensus 76 ~~~~~~~~~~~~--g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l---~~~~~gssva~~Vi~~a~~~c~Vlv-v~~~ 146 (146)
T cd01989 76 RKGVQCEDVVLE--DDDVAKAIVEYVADHGITKLVMGASSDNHF---SMKFKKSDVASSVLKEAPDFCTVYV-VSKG 146 (146)
T ss_pred hcCCeEEEEEEe--CCcHHHHHHHHHHHcCCCEEEEeccCCCce---eecccCCchhHHHHhcCCCCceEEE-EeCc
Confidence 234555555543 247899999999999999999999988554 233677 69999999999 99975 4443
No 25
>PRK15005 universal stress protein F; Provisional
Probab=99.13 E-value=4.9e-10 Score=108.20 Aligned_cols=137 Identities=14% Similarity=0.104 Sum_probs=85.4
Q ss_pred ceeEEeecCCCC--hHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcC
Q 003256 463 LRILCGIHDEDH--ISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGS 540 (836)
Q Consensus 463 lriLvcv~~~~~--~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 540 (836)
-+||+|++.+++ ...+++.+..++.. ...+++++|+++.................. .....++..+.++++.+..
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 79 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKI--DDAEVHFLTVIPSLPYYASLGLAYSAELPA-MDDLKAEAKSQLEEIIKKF 79 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhc--cCCeEEEEEEEccCcccccccccccccchH-HHHHHHHHHHHHHHHHHHh
Confidence 379999999987 46788877766643 356899999997532111110000000000 0001122223333332221
Q ss_pred -CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256 541 -NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 541 -~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI 609 (836)
...+.++..+. .++..+.|++.|++.++||||||.|+ .|. .+..+||+.++|++++||||.|
T Consensus 80 ~~~~~~~~~~v~---~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~---~~~llGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 80 KLPTDRVHVHVE---EGSPKDRILELAKKIPADMIIIASHR-PDI---TTYLLGSNAAAVVRHAECSVLV 142 (144)
T ss_pred CCCCCceEEEEe---CCCHHHHHHHHHHHcCCCEEEEeCCC-CCc---hheeecchHHHHHHhCCCCEEE
Confidence 12344554443 36789999999999999999999984 343 3448999999999999999865
No 26
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.09 E-value=1.4e-08 Score=110.91 Aligned_cols=270 Identities=12% Similarity=0.115 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256 110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS 183 (836)
Q Consensus 110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls 183 (836)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=..+.. +... ..--+|+-+
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~-----~~~GWgIPm- 130 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPE-----TLRGWAIPA- 130 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCc-----ccCcccccc-
Confidence 344566667778999999999876553 233443 44567788888754222211 1000 011122222
Q ss_pred cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW 261 (836)
Q Consensus 184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~ 261 (836)
.|+.+....++.=+| ..+..+....++-|++||+.++++++ +++-. ....+......++.+ . +
T Consensus 131 ATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt~~-----i~~~~L~~a~~~~~~--l--------~ 195 (389)
T PRK09560 131 ATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYTSD-----LSLPALALAAIAIAV--L--------F 195 (389)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecCCC-----CCHHHHHHHHHHHHH--H--------H
Confidence 233333333333222 25667788999999999999998888 66311 223333333222211 1 2
Q ss_pred HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc------hhhHHHHHHHHHHHHHHHHH
Q 003256 262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL------GSALVEKSEAILSNFFLPFF 335 (836)
Q Consensus 262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~------~~~l~~kl~~~~~~~flPlF 335 (836)
+.+|.. ++....+..+.+ +.-+....-|+|+.++..++|+++|..++. .+++++++++.+..+.+|+|
T Consensus 196 ~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlF 269 (389)
T PRK09560 196 LLNRLG----VTKLTPYLIVGA--ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLF 269 (389)
T ss_pred HHHHcC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHH
Confidence 223322 233444555443 333444578999999999999999975322 25678888999888899999
Q ss_pred -HHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHH
Q 003256 336 -YIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELVTF 404 (836)
Q Consensus 336 -F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~~~ 404 (836)
|...|..++-..+.+ ..-.....+++..++||.+|.+..++.. +.+|++-..+|++-+.-=++++-++
T Consensus 270 AlaNAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa 348 (389)
T PRK09560 270 AFANAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIG 348 (389)
T ss_pred HhhcCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 889998884322321 1112344555666788999888877653 5689999999987667778899999
Q ss_pred hhhhh
Q 003256 405 LRWRQ 409 (836)
Q Consensus 405 ~~~~~ 409 (836)
+.++.
T Consensus 349 ~LAF~ 353 (389)
T PRK09560 349 SLAFG 353 (389)
T ss_pred HhhcC
Confidence 99983
No 27
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.08 E-value=8.6e-10 Score=106.68 Aligned_cols=134 Identities=7% Similarity=0.002 Sum_probs=84.1
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND 542 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 542 (836)
-|||+|++.+++...+++.+..++.. .+..++++|+.+......+.......... .....++..+.++.+.+..
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-- 77 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARP--YNAKVSLIHVDVNYSDLYTGLIDVNLGDM--QKRISEETHHALTELSTNA-- 77 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHh--hCCEEEEEEEccChhhhhhhhhhcchHHH--HHHHHHHHHHHHHHHHHhC--
Confidence 37999999999999999998887743 35689999984321110000000000000 1111223334445544322
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
++.+..... ..++.++.|++.|++.++||||||.|++ + . + .+||+.++|+++|||||.|+
T Consensus 78 ~~~~~~~~~--~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-~-~--~--~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 78 GYPITETLS--GSGDLGQVLVDAIKKYDMDLVVCGHHQD-F-W--S--KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred CCCceEEEE--EecCHHHHHHHHHHHhCCCEEEEeCccc-H-H--H--HHHHHHHHHHhhCCCCEEEe
Confidence 343322221 2368899999999999999999999953 1 1 2 36899999999999998653
No 28
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.06 E-value=2.1e-08 Score=109.40 Aligned_cols=270 Identities=12% Similarity=0.148 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256 110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS 183 (836)
Q Consensus 110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls 183 (836)
....+.+.-+.+|.|.+|+|++.+.+. ++.|++ ..-++.|+++|.++=..+.. +... ..--+|+-+
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~-----~~~GWaIP~- 130 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPV-----TREGWAIPA- 130 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCc-----ccCcccccc-
Confidence 445566667778999999999876653 233443 34567788888754222111 1000 001122211
Q ss_pred cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW 261 (836)
Q Consensus 184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~ 261 (836)
.|+.+....++.=+| ..+..+....++-|++||+.++++++ +++- +....+......++.+ . +
T Consensus 131 ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~-----~i~~~~L~~a~~~~~~--l--------~ 195 (388)
T PRK09561 131 ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYTS-----DLSMVSLGVAAVAIAV--L--------A 195 (388)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecCC-----CccHHHHHHHHHHHHH--H--------H
Confidence 233333333333222 25667788999999999999999888 6631 1222333232222111 1 2
Q ss_pred HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc----hhhHHHHHHHHHHHHHHHHH-H
Q 003256 262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL----GSALVEKSEAILSNFFLPFF-Y 336 (836)
Q Consensus 262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~----~~~l~~kl~~~~~~~flPlF-F 336 (836)
+.+|.. ++....+.++.++ .-+....-|+|+.++..+.|+.+|...+. -+++++++++.+..+.+|+| |
T Consensus 196 ~ln~~~----v~~~~~Y~~~G~~--lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAf 269 (388)
T PRK09561 196 VLNLCG----VRRTSVYILVGVV--LWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAF 269 (388)
T ss_pred HHHHcC----CccchHHHHHHHH--HHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHh
Confidence 223322 2334445554433 34445578999999999999999975322 35688889999999999999 8
Q ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHhh
Q 003256 337 IHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELVTFLR 406 (836)
Q Consensus 337 ~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~~~~~ 406 (836)
+..|..++-..+. ...-.....+++..++||.+|.+..++.. +++|++-..+|++-+.-=++++-+++.
T Consensus 270 aNAGV~l~~~~~~-~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~L 348 (388)
T PRK09561 270 ANAGVSLQGVTLD-GLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASL 348 (388)
T ss_pred hcCCeeeccCcHH-hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899888322222 11112344555666788999888877653 468999999998766666888989999
Q ss_pred hhh
Q 003256 407 WRQ 409 (836)
Q Consensus 407 ~~~ 409 (836)
+++
T Consensus 349 AF~ 351 (388)
T PRK09561 349 AFG 351 (388)
T ss_pred hcC
Confidence 885
No 29
>PRK09982 universal stress protein UspD; Provisional
Probab=99.05 E-value=1.2e-09 Score=105.64 Aligned_cols=134 Identities=9% Similarity=0.031 Sum_probs=84.4
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND 542 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 542 (836)
-+||+|++.+++...+++.+..++. ..+.+++++|+++......+.....+.+.. .....++..+.++.+.+.. +
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~--~~~a~l~llhV~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~-~ 78 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELAR--HNDAHLTLIHIDDGLSELYPGIYFPATEDI--LQLLKNKSDNKLYKLTKNI-Q 78 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHH--HhCCeEEEEEEccCcchhchhhhccchHHH--HHHHHHHHHHHHHHHHHhc-C
Confidence 3799999999999999998887774 346789999998743211110000000000 0011122222333333322 1
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
...++..+.. ++.++.||+.|++.++||||||.| ++|. + ..++ +.++|+++++|||.|+
T Consensus 79 ~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~---~-~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 79 WPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFI---N-RLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred CCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHH---H-HHHH-HHHHHHhcCCCCEEEe
Confidence 2234444443 689999999999999999999976 5332 1 2455 9999999999998653
No 30
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.05 E-value=1.6e-09 Score=104.87 Aligned_cols=129 Identities=10% Similarity=0.065 Sum_probs=86.7
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc---------c---hhhhhhHHHHHHHHHhhcCCCCCE
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE---------E---EDDKCLDEVVMNDFMASNFGNPNV 697 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~---------~---~~e~~~d~~~l~~~~~~~~~~~~v 697 (836)
.|+|+++|++..+.|+++|.++|+..+++++++|++++..... + +..++..++.++++.+.... ..+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR-KGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence 4899999999999999999999999999999999987522110 0 11123334566666544322 233
Q ss_pred EEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccc-cccchhhccCCCCCc--ceEEEEee
Q 003256 698 VCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELG-IIGDMLASADFAEGM--VSVLVIQS 773 (836)
Q Consensus 698 ~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG-~igd~las~d~~~~~--~SvLvvqq 773 (836)
.+....+..+.....+++.. ..+.||||||+|++. |+.++ .+| .+.+.++.. ++ |+||||+.
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~------~l~~~----~~gssva~~Vi~~----a~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDN------HFSMK----FKKSDVASSVLKE----APDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCC------ceeec----ccCCchhHHHHhc----CCCCceEEEEeC
Confidence 33333333222222333333 255899999999986 77665 577 699999964 66 99999985
No 31
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.02 E-value=6.6e-08 Score=105.14 Aligned_cols=271 Identities=14% Similarity=0.109 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256 110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS 183 (836)
Q Consensus 110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls 183 (836)
..+.+.+.-+.+|.|.+|+|++.+.+. ++.|++ ..-++.|+++|.++=..+.. ... ..--+|+-+
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~----~~~----~~~GW~IP~- 126 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH----DIK----VINGWAIPS- 126 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc----CCc----ccCcccccc-
Confidence 345566666778999999999876542 233443 45577788888764332221 100 011122222
Q ss_pred cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW 261 (836)
Q Consensus 184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~ 261 (836)
.|+.+....++.=+| ..+..+.-..++-|++||+.++++++ +++- +....+......++. +.+
T Consensus 127 ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt~-----~i~~~~L~~A~~~~~--~l~-------- 191 (383)
T PRK14854 127 ATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYTK-----SLSLLSLSLGTLFIL--AMI-------- 191 (383)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecCC-----CccHHHHHHHHHHHH--HHH--------
Confidence 233222233333222 25667778889999999999998888 6531 112222222221111 111
Q ss_pred HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc----hhhHHHHHHHHHHHHHHHHH-H
Q 003256 262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL----GSALVEKSEAILSNFFLPFF-Y 336 (836)
Q Consensus 262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~----~~~l~~kl~~~~~~~flPlF-F 336 (836)
+.+|.. .++....++++.+ +.-+....-|+|+.++..+.|+++|...+. .+++++++++.+..+.+|+| |
T Consensus 192 ~~nr~~---~v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~ 266 (383)
T PRK14854 192 ICNRIF---KINRSSVYVVLGF--FAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAF 266 (383)
T ss_pred HHHHhc---CCceehHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHh
Confidence 122210 1223344444433 334445678999999999999999974322 25678888899999999999 8
Q ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHhh
Q 003256 337 IHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELVTFLR 406 (836)
Q Consensus 337 ~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~~~~~ 406 (836)
+..|..++-..+. ...-.....+++..++||.+|.+..++.. +++|++-..+|++-+.-=++++-+++.
T Consensus 267 aNAGV~l~~~~~~-~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~L 345 (383)
T PRK14854 267 ANAGISFSGISFS-ILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVL 345 (383)
T ss_pred hcCCeeeccCcHH-hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999888422222 11112344555666788999888877653 468999999999766777889999999
Q ss_pred hhhc
Q 003256 407 WRQR 410 (836)
Q Consensus 407 ~~~~ 410 (836)
+++.
T Consensus 346 AF~~ 349 (383)
T PRK14854 346 AFND 349 (383)
T ss_pred hCCC
Confidence 9853
No 32
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.01 E-value=2.3e-09 Score=100.76 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=87.0
Q ss_pred eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCCc
Q 003256 464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDA 543 (836)
Q Consensus 464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 543 (836)
|||+|++.++....+++.+..++.. .+..++++|+++.... + . ....++.++.+.+..+.. +
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~--~----~--------~~~~~~~l~~~~~~~~~~--~ 62 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR--LKAPWYVVYVETPRLN--R----L--------SEAERRRLAEALRLAEEL--G 62 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH--hCCCEEEEEEecCccc--c----C--------CHHHHHHHHHHHHHHHHc--C
Confidence 6999999999999999999888754 3668999999863211 0 0 111233444444433321 2
Q ss_pred eeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccC-CcceEE
Q 003256 544 VTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYA-PCTVGI 609 (836)
Q Consensus 544 v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~A-pCsVgI 609 (836)
+ +..+.. .++..+.|++.+++.++|+||||+|++++. .+..+||+.++|+++| ||||.|
T Consensus 63 ~--~~~~~~--~~~~~~~I~~~~~~~~~dllviG~~~~~~~---~~~~~Gs~~~~v~~~a~~~~v~v 122 (124)
T cd01987 63 A--EVVTLP--GDDVAEAIVEFAREHNVTQIVVGKSRRSRW---RELFRGSLVDRLLRRAGNIDVHI 122 (124)
T ss_pred C--EEEEEe--CCcHHHHHHHHHHHcCCCEEEeCCCCCchH---HHHhcccHHHHHHHhCCCCeEEE
Confidence 2 233333 357899999999999999999999987444 4458999999999999 999865
No 33
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.00 E-value=1.4e-07 Score=104.38 Aligned_cols=266 Identities=11% Similarity=0.084 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256 110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS 183 (836)
Q Consensus 110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls 183 (836)
....+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=.. +-.. .+ ..--+|+-+
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~----~n~~-~~---~~~GWgIPm- 133 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTA----LNAG-GP---GASGWGVPM- 133 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHhe----eecC-CC---ccCcccccc-
Confidence 344556666778999999999876653 233443 34567788888754222 1111 10 111222222
Q ss_pred cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW 261 (836)
Q Consensus 184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~ 261 (836)
.|+.+....+|.=+| ..+..+....++-|++||+.++++++ +++-. ....+.....+++.+ .+
T Consensus 134 ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~~-----i~~~~L~~a~~~~~~----------l~ 198 (423)
T PRK14855 134 ATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYTSG-----LNLLALLLAALTWAL----------AL 198 (423)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecCCC-----CCHHHHHHHHHHHHH----------HH
Confidence 234333344444333 24556788899999999999998888 65311 122333332222211 12
Q ss_pred HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-Cc-------------------------
Q 003256 262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP-PL------------------------- 315 (836)
Q Consensus 262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~-~~------------------------- 315 (836)
+.+|.. ++....++++.+ +.-+....-|+|+.++..+.|+++|..+ +.
T Consensus 199 ~ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (423)
T PRK14855 199 LAGRLG----VTSLKIYAVLGA--LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRD 272 (423)
T ss_pred HHHHcC----CccccHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHh
Confidence 233321 233444444443 3344455789999999999999999741 11
Q ss_pred -----------hhhHHHHHHHHHHHHHHHHH-HHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Q 003256 316 -----------GSALVEKSEAILSNFFLPFF-YIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF---- 379 (836)
Q Consensus 316 -----------~~~l~~kl~~~~~~~flPlF-F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~---- 379 (836)
.+++++.+++.+..+.+|+| |+..|..++-..+. + ....+++..++||.+|.+..++..
T Consensus 273 ~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~-p----v~lGI~~GLvvGK~lGI~~~s~lavkl~ 347 (423)
T PRK14855 273 LEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLG-T----VSLGVFLGLLLGKPLGVVGGAWLAVRLG 347 (423)
T ss_pred hhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCC-c----HHHHHHHHHHhcchHHHHHHHHHHHHhC
Confidence 13566777788888999999 88999888433322 2 234455566788999888877653
Q ss_pred ------CCChHHHHHHHHHhhhhhhHHHHHHhhhhhc
Q 003256 380 ------RTSFRNALLFSCFVNIKGVSELVTFLRWRQR 410 (836)
Q Consensus 380 ------~~~~real~lg~~m~~rG~v~l~~~~~~~~~ 410 (836)
+++|++-...|++-+.-=++++-+++.+++.
T Consensus 348 ~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 384 (423)
T PRK14855 348 LASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFAD 384 (423)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5789999999997667778899999999853
No 34
>PRK15005 universal stress protein F; Provisional
Probab=98.99 E-value=3.4e-09 Score=102.31 Aligned_cols=128 Identities=11% Similarity=0.100 Sum_probs=86.9
Q ss_pred ccEEEEEccCCcc--hHHHHHHHHHhhcCCCeEEEEEEEeecCCcc--------cc----hhhhhhHHHHHHHHHhhcCC
Q 003256 628 CYNVAVFFIGGPD--DREAMALVSHMSSNPGVRITLSRIYLEENLV--------EE----EDDKCLDEVVMNDFMASNFG 693 (836)
Q Consensus 628 ~~~I~v~f~Gg~d--dreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~--------~~----~~e~~~d~~~l~~~~~~~~~ 693 (836)
+++|++|.+|++. ++.|+++|.++|+..+++++++|++++.... .+ +..++..++.++++.++...
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL 81 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 4689999999998 4799999999999999999999999752110 00 11122333566666655422
Q ss_pred CCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 694 NPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 694 ~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
..+.+.. .+..|.....+++.. ..++||||||+|+ . |+.+| -+|...+.+.. .++++||||+
T Consensus 82 -~~~~~~~-~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~------~~~~~----llGS~a~~vl~----~a~cpVlvVr 144 (144)
T PRK15005 82 -PTDRVHV-HVEEGSPKDRILELAKKIPADMIIIASHR-P------DITTY----LLGSNAAAVVR----HAECSVLVVR 144 (144)
T ss_pred -CCCceEE-EEeCCCHHHHHHHHHHHcCCCEEEEeCCC-C------Cchhe----eecchHHHHHH----hCCCCEEEeC
Confidence 2222222 244454444444433 3679999999884 4 66665 68999999996 5899999985
No 35
>PRK09982 universal stress protein UspD; Provisional
Probab=98.95 E-value=2.9e-09 Score=102.96 Aligned_cols=125 Identities=11% Similarity=0.060 Sum_probs=84.6
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCc---c----c-c---hhhhhhHHHHHHHHHhhcCCCCC
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL---V----E-E---EDDKCLDEVVMNDFMASNFGNPN 696 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~---~----~-~---~~e~~~d~~~l~~~~~~~~~~~~ 696 (836)
+++|++|.+|+++++.|+++|.++|+.++++++++|++++... . . + +..++..++.+++.++... ...
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPK 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 5789999999999999999999999999999999999864211 0 0 0 1112223345666665442 223
Q ss_pred EEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEee
Q 003256 697 VVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQS 773 (836)
Q Consensus 697 v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq 773 (836)
+.+. +..|.....+++.. ..++||||||+| +. |+++| +| +.+.+.. .++++||||+-
T Consensus 82 ~~~~---v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~------~~~~~-----~~-va~~V~~----~s~~pVLvv~~ 139 (142)
T PRK09982 82 TKLR---IERGEMPETLLEIMQKEQCDLLVCGHH-HS------FINRL-----MP-AYRGMIN----KMSADLLIVPF 139 (142)
T ss_pred ceEE---EEecCHHHHHHHHHHHcCCCEEEEeCC-hh------HHHHH-----HH-HHHHHHh----cCCCCEEEecC
Confidence 3333 33343333344433 367999999986 54 77776 46 8888884 69999999963
No 36
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.94 E-value=3e-09 Score=100.54 Aligned_cols=137 Identities=12% Similarity=0.145 Sum_probs=86.7
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND 542 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 542 (836)
-|||+|++++++...+++.+..++.. ....++++|+++.............................. +.... ..
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~ 77 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEA-EEAEA--EG 77 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeeccccccccccccccccccccchhhhhhhHHH-HHHhh--hc
Confidence 38999999999999999998887744 467999999998654321110000000000000000000000 11111 12
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
.......... .+..+.|++.+++.++|+||||.|++.+.. +..+|++.+++++++||||.|+
T Consensus 78 ~~~~~~~~~~---~~~~~~i~~~~~~~~~dliv~G~~~~~~~~---~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 78 GIVIEVVIES---GDVADAIIEFAEEHNADLIVMGSRGRSGLE---RLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp TSEEEEEEEE---SSHHHHHHHHHHHTTCSEEEEESSSTTSTT---TSSSHHHHHHHHHHTSSEEEEE
T ss_pred cceeEEEEEe---eccchhhhhccccccceeEEEeccCCCCcc---CCCcCCHHHHHHHcCCCCEEEe
Confidence 2333333332 589999999999999999999999874443 3479999999999999999764
No 37
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.90 E-value=1.5e-08 Score=95.88 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=84.5
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc---chhhhhhHHHHHHHHHhhcCC-CCCEEEEEEEcC
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE---EEDDKCLDEVVMNDFMASNFG-NPNVVCRRIDAN 705 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~---~~~e~~~d~~~l~~~~~~~~~-~~~v~y~e~~v~ 705 (836)
||+||.+|+++++.+|++|.+||+..+++++++|+.++..... .+.+.+..++.++.+.+.... +..+.+.. ..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~ 78 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTII--RI 78 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEE--Ee
Confidence 5899999999999999999999999999999999997532211 112223334555555544321 12333222 11
Q ss_pred ChHHHHHHHHhc--ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 706 DSNQLVNAFRSL--VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 706 ~g~~~~~~i~~~--~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
.+ +..+.|.++ +.++||+|||++++. ++.+ ..+|...+.+.. .++++||||+
T Consensus 79 ~~-~~~~~I~~~a~~~~~dlIV~G~~~~~------~~~~----~~lGs~~~~v~~----~~~~pvlvv~ 132 (132)
T cd01988 79 DH-DIASGILRTAKERQADLIIMGWHGST------SLRD----RLFGGVIDQVLE----SAPCDVAVVK 132 (132)
T ss_pred cC-CHHHHHHHHHHhcCCCEEEEecCCCC------Cccc----eecCchHHHHHh----cCCCCEEEeC
Confidence 22 222333333 256999999999876 4433 379999999996 5889999985
No 38
>PRK15456 universal stress protein UspG; Provisional
Probab=98.90 E-value=1.3e-08 Score=98.19 Aligned_cols=127 Identities=11% Similarity=0.038 Sum_probs=84.5
Q ss_pred ccEEEEEccCCc--chHHHHHHHHHhhcCCCeEEEEEEEeecCCcc------c--c---hhhhhhHHHHHHHHHhhcCCC
Q 003256 628 CYNVAVFFIGGP--DDREAMALVSHMSSNPGVRITLSRIYLEENLV------E--E---EDDKCLDEVVMNDFMASNFGN 694 (836)
Q Consensus 628 ~~~I~v~f~Gg~--ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~------~--~---~~e~~~d~~~l~~~~~~~~~~ 694 (836)
+++|++|.+|++ .++.|+++|.++|+.. .+++++|++++.... . + +..++..++.++++......
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 79 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI- 79 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC-
Confidence 469999999984 7999999999999875 699999998752210 1 1 11123344566666655422
Q ss_pred CCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 695 PNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 695 ~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
..+.+. ..+..|....++++.. +.+.||||||+|++ |+.+| -+|...+.++. .++|+||||+
T Consensus 80 ~~~~v~-~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~-------~~~~~----llGS~a~~v~~----~a~~pVLvV~ 142 (142)
T PRK15456 80 DPSRIK-QHVRFGSVRDEVNELAEELGADVVVIGSRNP-------SISTH----LLGSNASSVIR----HANLPVLVVR 142 (142)
T ss_pred CCcceE-EEEcCCChHHHHHHHHhhcCCCEEEEcCCCC-------Cccce----ecCccHHHHHH----cCCCCEEEeC
Confidence 222222 2234453333333322 36799999999975 54443 69999999996 5899999985
No 39
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.89 E-value=1.1e-08 Score=111.54 Aligned_cols=272 Identities=15% Similarity=0.184 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchhh---hccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256 110 FAQAASTIGGIYFVFINTVKMDKGMIP---RTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS 183 (836)
Q Consensus 110 ~l~~l~~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls 183 (836)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++ |+...... ....--+|+- .
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI------yl~~n~~~-~~~~~GW~IP-~ 126 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI------YLAFNAGG-PEAAHGWAIP-M 126 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH------HGGG--SS-TTHHHHTSSS-S
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH------HheeecCC-CCcCceEEec-c
Confidence 445566777788999999999876542 233433 34466677777643 11111110 0011233332 2
Q ss_pred cccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 184 KCAYPVLVDAISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW 261 (836)
Q Consensus 184 ~Ts~~vv~~iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~ 261 (836)
.|+.+....++.=++ ..+..+....++-|++||+.++++++ +++- + ....+.....+++. .. |
T Consensus 127 ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt~---~--i~~~~L~~a~~~~~--~l--------~ 191 (378)
T PF06965_consen 127 ATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYTD---G--ISLLWLLLAAAALL--LL--------F 191 (378)
T ss_dssp ---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS----------HHHHHHHHHHHH--HH--------H
T ss_pred cccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeCC---C--CCHHHHHHHHHHHH--HH--------H
Confidence 355555555555443 24566788999999999999999988 6631 1 12222222222111 11 2
Q ss_pred HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch--------hhHHHHHHHHHHHHHHH
Q 003256 262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLG--------SALVEKSEAILSNFFLP 333 (836)
Q Consensus 262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~--------~~l~~kl~~~~~~~flP 333 (836)
..+|.. ++....+..+.+ +.-+....-|+|+.++..+.|+.+|..++.+ +++++++++.++.+.+|
T Consensus 192 ~l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlP 265 (378)
T PF06965_consen 192 VLNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILP 265 (378)
T ss_dssp HHHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHH
Confidence 233322 223344444432 3344456789999999999999999875442 47888888999999999
Q ss_pred HH-HHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHH
Q 003256 334 FF-YIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELV 402 (836)
Q Consensus 334 lF-F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~ 402 (836)
+| |+..|..++-..+... .-.....+++..++||.+|.+..++.. +++|++-...|++-+.-=++++-
T Consensus 266 lFAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLF 344 (378)
T PF06965_consen 266 LFALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLF 344 (378)
T ss_dssp HHHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHH
T ss_pred hHhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99 8999998886654311 112233445566789999988876653 46788888888876666788999
Q ss_pred HHhhhhhcc
Q 003256 403 TFLRWRQRE 411 (836)
Q Consensus 403 ~~~~~~~~~ 411 (836)
+++.+++..
T Consensus 345 Ia~LAF~~~ 353 (378)
T PF06965_consen 345 IAGLAFDDP 353 (378)
T ss_dssp HHHHHSTT-
T ss_pred HHHHHcCCh
Confidence 999998863
No 40
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.85 E-value=8.1e-10 Score=123.96 Aligned_cols=367 Identities=11% Similarity=0.071 Sum_probs=227.4
Q ss_pred HHHHHHHHhcccC--CChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhc
Q 003256 61 ISQILYILLRPLK--QPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRT 138 (836)
Q Consensus 61 ~s~l~~~ll~rl~--~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~ 138 (836)
++.+...+..+++ .|.-...|+.|+++|-.+.+....-. +..++ ++ +--.-+--++|-+|.-|.-+.+..+
T Consensus 53 LaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~---~~L~s-~v---FFlyLLPPIvlDAGYfMp~r~Ff~N 125 (670)
T KOG1966|consen 53 LAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAP---FFLES-DV---FFLYLLPPIVLDAGYFMPNRAFFEN 125 (670)
T ss_pred HHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcccc---ccccc-cc---hhhhhcCHHHhcccccCccHHHHhc
Confidence 3344444444444 79888999999999976544311000 00011 11 1111122367899999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHh--hcccc--ccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHH
Q 003256 139 IKKTYSVSLTVFIVPLLISLLVGHRE--QYKIP--RIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALL 214 (836)
Q Consensus 139 ~~~~~~ia~~~~l~p~~lg~~~~~~l--~~~~~--~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v 214 (836)
..+.+..+..|.+.-.+...+.-|.+ ...+. .+.-..++.|...|..++..+..+..|.. .|.-+=-++.+++++
T Consensus 126 lgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGESLl 204 (670)
T KOG1966|consen 126 LGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGESLL 204 (670)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhhhh
Confidence 99999999998887544322222221 11222 11112488999999999999999999998 577777889999999
Q ss_pred HHHHHHHHHH-HHHhhcccc-h------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHH
Q 003256 215 HEIVGLLRLL-MAPLSKAKY-R------SVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALV 286 (836)
Q Consensus 215 ~Di~~~~ll~-~~~~~~~~~-~------~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~ 286 (836)
||.+.+++.- ..+...-++ + ......++...+.++.++.++..+.....|.+.. ++-...++++.+.+.
T Consensus 205 NDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~pYl 281 (670)
T KOG1966|consen 205 NDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLLPYL 281 (670)
T ss_pred cCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhHHHH
Confidence 9999998877 554432211 1 0111111111222333444444445545555432 344566788888999
Q ss_pred HHHHHHHhchhHHHHHHHHHhhccCCC--CchhhH---HHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 003256 287 MAVACDSMRVNYTIGAAMLGIVIPAGP--PLGSAL---VEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELII 361 (836)
Q Consensus 287 ~~~iae~~G~~~~lGaf~aGl~i~~~~--~~~~~l---~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii 361 (836)
++..+|.+++|++++-.++|+++...- ...++. ++.+-...+..--++.|++.|..+--. -..| ++.++.+-+
T Consensus 282 aYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~-~h~w-d~~Fi~~T~ 359 (670)
T KOG1966|consen 282 AYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS-NHHW-DFAFICLTL 359 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC-ccee-ehhhhhhHH
Confidence 999999999999999999999997641 122222 222223345566677888888876322 1212 344455555
Q ss_pred HHHHHHHHHHHHHHHhhc------CCChHHHHHHHHHhhhhhhHHHHHHhhhhhc-----cccchhhHHHHHHHHHHHHH
Q 003256 362 MAAYIGKVVASILATTCF------RTSFRNALLFSCFVNIKGVSELVTFLRWRQR-----ELIDVQTYSVLVLTNLAVTA 430 (836)
Q Consensus 362 ~~~~~~K~~~~~l~~~~~------~~~~real~lg~~m~~rG~v~l~~~~~~~~~-----~ii~~~~~~~~vl~~lv~t~ 430 (836)
+.+.+.|.+++...+++. +++..|-+.++.. +-||.+...+...--.. .+.=..++.++.+++.++.+
T Consensus 360 ~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVflQGi 438 (670)
T KOG1966|consen 360 VFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFLQGI 438 (670)
T ss_pred HHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeeeccc
Confidence 566677888877777665 4567777777653 56887766654432212 22334555666677888888
Q ss_pred hHHHHHHHhcc
Q 003256 431 IVTPLISVYYN 441 (836)
Q Consensus 431 i~~plv~~l~~ 441 (836)
...|+++++--
T Consensus 439 TIkplvk~L~V 449 (670)
T KOG1966|consen 439 TIKPLVKFLKV 449 (670)
T ss_pred chHHHHHHHcc
Confidence 99999999863
No 41
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.83 E-value=2.2e-08 Score=94.61 Aligned_cols=127 Identities=16% Similarity=0.217 Sum_probs=83.4
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccch------hhhhhHHHHHH-----HHHhhcCCCCC
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEE------DDKCLDEVVMN-----DFMASNFGNPN 696 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~------~e~~~d~~~l~-----~~~~~~~~~~~ 696 (836)
.+||+++++|++++++|+++|.++|+..+++++++|+.++....... .....++.... +.... ....
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 79 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEA--EGGI 79 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTS
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhh--hccc
Confidence 47999999999999999999999999999999999999864332110 00000000000 00111 1122
Q ss_pred EEEEEEEcCChHH-HHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 697 VVCRRIDANDSNQ-LVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 697 v~y~e~~v~~g~~-~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
..+......+..+ +.+.++ ..++||+|||++++. ++.+| -+|.+.+.++. .++++||||.
T Consensus 80 ~~~~~~~~~~~~~~i~~~~~--~~~~dliv~G~~~~~------~~~~~----~~gs~~~~l~~----~~~~pVlvv~ 140 (140)
T PF00582_consen 80 VIEVVIESGDVADAIIEFAE--EHNADLIVMGSRGRS------GLERL----LFGSVAEKLLR----HAPCPVLVVP 140 (140)
T ss_dssp EEEEEEEESSHHHHHHHHHH--HTTCSEEEEESSSTT------STTTS----SSHHHHHHHHH----HTSSEEEEEE
T ss_pred eeEEEEEeeccchhhhhccc--cccceeEEEeccCCC------CccCC----CcCCHHHHHHH----cCCCCEEEeC
Confidence 3333333344332 222222 377999999999976 66665 59999999996 4889999985
No 42
>PRK10116 universal stress protein UspC; Provisional
Probab=98.78 E-value=3.4e-08 Score=95.15 Aligned_cols=134 Identities=8% Similarity=-0.009 Sum_probs=86.6
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND 542 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 542 (836)
-|||++++.+++...+++.+..++... ...++++|+++..... ... .....+.. .....++..+.++++.+. .
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~~l~~~~~~--~ 76 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPV--NGKISLITLASDPEMY-NQF-AAPMLEDL-RSVMQEETQSFLDKLIQD--A 76 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHh--CCEEEEEEEccCcccc-hhh-hHHHHHHH-HHHHHHHHHHHHHHHHHh--c
Confidence 489999999999999999988887443 5688999998653111 000 00000000 111222333445554432 2
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
++..... .-..++..+.|++.|++.++||||||.|++++.. .++++.++|++++||||.|+
T Consensus 77 ~~~~~~~--~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~-----~~~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 77 DYPIEKT--FIAYGELSEHILEVCRKHHFDLVICGNHNHSFFS-----RASCSAKRVIASSEVDVLLV 137 (142)
T ss_pred CCCeEEE--EEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHH-----HHHHHHHHHHhcCCCCEEEE
Confidence 3333211 1235788999999999999999999999874432 12488999999999999765
No 43
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.76 E-value=2.4e-08 Score=96.55 Aligned_cols=126 Identities=10% Similarity=0.072 Sum_probs=82.0
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc------c--chhh---hhhHHHHHHHHHhhcCCCCC
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV------E--EEDD---KCLDEVVMNDFMASNFGNPN 696 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~------~--~~~e---~~~d~~~l~~~~~~~~~~~~ 696 (836)
+++|++|.+|++.++.||++|..+|+..+++++++|+..+.... . ++.+ ++...+.++++..+. .
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 78 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA----G 78 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 57999999999999999999999999999999999995321110 0 0111 111223344444321 1
Q ss_pred EEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeec
Q 003256 697 VVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSV 774 (836)
Q Consensus 697 v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~ 774 (836)
+...+..+..|....++++.. ..++||||||+|++ ++. .+|...+.+.. .++++||||+..
T Consensus 79 ~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-------~~~------~lgSva~~v~~----~a~~pVLvv~~~ 140 (144)
T PRK15118 79 YPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQD-------FWS------KLMSSARQLIN----TVHVDMLIVPLR 140 (144)
T ss_pred CCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCccc-------HHH------HHHHHHHHHHh----hCCCCEEEecCC
Confidence 222222333444444444444 36799999999953 221 27899999995 589999999863
No 44
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.76 E-value=1.2e-06 Score=91.84 Aligned_cols=260 Identities=13% Similarity=0.167 Sum_probs=157.1
Q ss_pred HHHHHHHhhhccCcchhhh---ccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHH
Q 003256 119 GIYFVFINTVKMDKGMIPR---TIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVD 192 (836)
Q Consensus 119 l~~llF~~Gle~d~~~l~~---~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~ 192 (836)
..+|.+.+|+|++.+.+.. +++++ ..-++.|++.|.++ +.++ ....+ ...--++ +-+.|+.+....
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~-n~~~p--~~~~GWa-IP~ATDiAFAlG 142 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLAL-NAGDP--ATLEGWA-IPMATDIAFALG 142 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hhee-ecCCh--hhhcCcC-cccHHHHHHHHH
Confidence 4567788999998877643 34443 34456677777643 1111 11110 0001111 122344444444
Q ss_pred HHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 003256 193 AISELK-LLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERK 270 (836)
Q Consensus 193 iL~el~-l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~ 270 (836)
+++-++ ..++.+.-..++-|++||+-+++..+ ...-. .+..+.....++ +.... ..+|.
T Consensus 143 vlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt~~-----Ls~~al~~a~~~--i~vL~--------~lN~~---- 203 (390)
T COG3004 143 VLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTTD-----LSMAALGIAALA--IAVLA--------VLNRL---- 203 (390)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhcCC-----ccHHHHHHHHHH--HHHHH--------HHHHh----
Confidence 444442 35777888899999999999998888 65321 112222121111 11111 11221
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch----hhHHHHHHHHHHHHHHHHH-HHHhhcccc-
Q 003256 271 PVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLG----SALVEKSEAILSNFFLPFF-YIHVGQQID- 344 (836)
Q Consensus 271 ~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~----~~l~~kl~~~~~~~flPlF-F~~~Gl~id- 344 (836)
.++....++++..++..+ -..-|+|..++..+.|+.+|-....+ +++++.+++.+..+.+|+| |...|..++
T Consensus 204 ~v~~l~~Y~~~gviLW~~--vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g 281 (390)
T COG3004 204 GVRRLSPYLLVGVILWIA--VLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQG 281 (390)
T ss_pred CchhhhHHHHHHHHHHHH--HHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCccccc
Confidence 122234444554444333 34679999999999999999653333 5677778888889999999 889998776
Q ss_pred --ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHhhhhhhHHHHHHhhhhhcc
Q 003256 345 --IYSINNWRAFAALELIIMAAYIGKVVASILATTCF----------RTSFRNALLFSCFVNIKGVSELVTFLRWRQRE 411 (836)
Q Consensus 345 --l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ 411 (836)
...+.+ .....+++..++||.++.+..++.. +.+|++-...+++-+..=++++-+.+.+++..
T Consensus 282 ~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~~ 356 (390)
T COG3004 282 VSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGSE 356 (390)
T ss_pred cccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCCh
Confidence 333331 2234555666889999888877653 56899988888876666678888888888653
No 45
>PRK11175 universal stress protein UspE; Provisional
Probab=98.74 E-value=4e-08 Score=107.41 Aligned_cols=143 Identities=10% Similarity=0.008 Sum_probs=87.6
Q ss_pred ceeEEeecCCCCh-------HHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcc-cccccccccCchHHHHHHHH
Q 003256 463 LRILCGIHDEDHI-------SGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETY-STQKTKAMANSTDHIMRAVI 534 (836)
Q Consensus 463 lriLvcv~~~~~~-------~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~-~~~~~~~~~~~~~~i~~af~ 534 (836)
-+||+|++.++.. ..+++.+..++... ....++++|+.+............ ...+. .....++..+.++
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ 229 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQL-NHAEVHLVNAYPVTPINIAIELPEFDPSVY--NDAIRGQHLLAMK 229 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhC-cCCceEEEEEecCcchhccccccccchhhH--HHHHHHHHHHHHH
Confidence 5899999987653 45777777766432 145889999986442110000000 00000 0011122333444
Q ss_pred HHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCC
Q 003256 535 KYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKR 614 (836)
Q Consensus 535 ~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg 614 (836)
++.+.. ++........ .++..+.|++.|+++++||||||+|++.+.. +..+||+.++|++++||||.++.++|
T Consensus 230 ~~~~~~--~~~~~~~~v~--~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~---~~llGS~a~~v~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 230 ALRQKF--GIDEEQTHVE--EGLPEEVIPDLAEHLDAELVILGTVGRTGLS---AAFLGNTAEHVIDHLNCDLLAIKPDG 302 (305)
T ss_pred HHHHHh--CCChhheeec--cCCHHHHHHHHHHHhCCCEEEECCCccCCCc---ceeecchHHHHHhcCCCCEEEEcCCC
Confidence 443322 2222211112 2578899999999999999999999886553 34899999999999999997765555
Q ss_pred C
Q 003256 615 L 615 (836)
Q Consensus 615 ~ 615 (836)
+
T Consensus 303 ~ 303 (305)
T PRK11175 303 Y 303 (305)
T ss_pred C
Confidence 3
No 46
>PRK10116 universal stress protein UspC; Provisional
Probab=98.71 E-value=4.9e-08 Score=93.99 Aligned_cols=125 Identities=12% Similarity=0.109 Sum_probs=83.3
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCc---c-c---chh---hhhhHHHHHHHHHhhcCCCCCE
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL---V-E---EED---DKCLDEVVMNDFMASNFGNPNV 697 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~---~-~---~~~---e~~~d~~~l~~~~~~~~~~~~v 697 (836)
+++|+++.+++++.+.||++|.++|+..++++++++++++... . . ++. .++..++.++++..+. .+
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 78 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA----DY 78 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 5799999999999999999999999999999999999864211 0 0 011 1111224455544332 12
Q ss_pred EEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 698 VCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 698 ~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
......+..|.....+++.. ..++||+|+|+|++. ++++| +..++.++. .++++||||.
T Consensus 79 ~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~------~~~~~------~s~a~~v~~----~~~~pVLvv~ 138 (142)
T PRK10116 79 PIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHS------FFSRA------SCSAKRVIA----SSEVDVLLVP 138 (142)
T ss_pred CeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcch------HHHHH------HHHHHHHHh----cCCCCEEEEe
Confidence 11222344454444555443 357999999999875 66554 356888885 6999999996
No 47
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.66 E-value=1.9e-07 Score=87.17 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=88.7
Q ss_pred eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCCc
Q 003256 464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSNDA 543 (836)
Q Consensus 464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 543 (836)
+||+|++++++...+++.+..++... +..++++|+.+..+.... ...+. .....++.++.+..... ..+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~--~~~i~~l~v~~~~~~~~~-----~~~~~--~~~~~~~~l~~~~~~~~--~~~ 69 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL--GAELVLLHVVDPPPSSAA-----ELAEL--LEEEARALLEALREALA--EAG 69 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCCCCcch-----hHHHH--HHHHHHHHHHHHHHHHh--cCC
Confidence 68999999999999999998888654 678999999765433211 00000 11112333333333211 234
Q ss_pred eeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256 544 VTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 544 v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI 609 (836)
+.++...... +..++|++.+++.++|++|||++++++. .+..+|++.++++++++|||.+
T Consensus 70 ~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~---~~~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 70 VKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGL---RRLLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred CceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcc---ceeeeccHHHHHHhCCCCCEEe
Confidence 5565555443 3489999999999999999999987443 2347899999999999999864
No 48
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.63 E-value=2.1e-07 Score=87.34 Aligned_cols=121 Identities=10% Similarity=0.099 Sum_probs=82.0
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHH
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQ 709 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~ 709 (836)
||+++++|++.+++|+++|.++|++.+++|+++|+.++...... +..++.++++++.... ..+.+.. +..+ +
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~----~~~~~~l~~~~~~~~~-~~~~~~~--~~~~-~ 72 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLS----EAERRRLAEALRLAEE-LGAEVVT--LPGD-D 72 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCC----HHHHHHHHHHHHHHHH-cCCEEEE--EeCC-c
Confidence 58999999999999999999999999999999999986432111 1122344444433211 1233322 2222 2
Q ss_pred HHHHHHhc--ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEE
Q 003256 710 LVNAFRSL--VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVI 771 (836)
Q Consensus 710 ~~~~i~~~--~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvv 771 (836)
..+.|.+. +.+.|++++|+|++. ++.++ .+|...+.++.. ..+++|||+
T Consensus 73 ~~~~I~~~~~~~~~dllviG~~~~~------~~~~~----~~Gs~~~~v~~~---a~~~~v~v~ 123 (124)
T cd01987 73 VAEAIVEFAREHNVTQIVVGKSRRS------RWREL----FRGSLVDRLLRR---AGNIDVHIV 123 (124)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCc------hHHHH----hcccHHHHHHHh---CCCCeEEEe
Confidence 23333333 366899999999886 66654 799999999964 238899997
No 49
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.52 E-value=1.3e-06 Score=81.51 Aligned_cols=125 Identities=12% Similarity=0.142 Sum_probs=84.1
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc---chhhhhhHHHHHHHHHhhcC-CCCCEEEEEEEcC
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE---EEDDKCLDEVVMNDFMASNF-GNPNVVCRRIDAN 705 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~---~~~e~~~d~~~l~~~~~~~~-~~~~v~y~e~~v~ 705 (836)
+|++++++++..+.++.+|.++|+..+++++++++.++..... ++.+....++.++++..... .+.++.+.- .
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~- 77 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVV--L- 77 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEE--e-
Confidence 5899999999999999999999999999999999987643211 11223334466777766531 122344332 2
Q ss_pred ChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEE
Q 003256 706 DSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVI 771 (836)
Q Consensus 706 ~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvv 771 (836)
.+......++.. ..++|++|+|++++. ++.+| ..|.+.+.|.. .++++||+|
T Consensus 78 ~~~~~~~i~~~~~~~~~dlvvig~~~~~------~~~~~----~~~~~~~~ll~----~~~~pvliv 130 (130)
T cd00293 78 EGDPAEAILEAAEELGADLIVMGSRGRS------GLRRL----LLGSVAERVLR----HAPCPVLVV 130 (130)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEcCCCCC------cccee----eeccHHHHHHh----CCCCCEEeC
Confidence 232222333332 366899999998775 44333 68999999995 478899875
No 50
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.29 E-value=9.4e-06 Score=78.40 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=87.0
Q ss_pred ceeEEeec-CCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchh-cccccc---cccccCchHHHHHHHHHHh
Q 003256 463 LRILCGIH-DEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVE-TYSTQK---TKAMANSTDHIMRAVIKYA 537 (836)
Q Consensus 463 lriLvcv~-~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~-~~~~~~---~~~~~~~~~~i~~af~~~~ 537 (836)
-+||++++ .++......+.+...+... ...++++++++.......... ...... ........++..+..+...
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRL--GAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhc--CCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 58999999 8888888888887776543 446667887765443211111 000000 0001122344455444443
Q ss_pred hcCCCcee-EEEEEEEcCCcch-HHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 538 EGSNDAVT-IQPFIMISQYETM-HESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 538 ~~~~~~v~-v~~~t~vs~~~~m-~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
+.. .+. ++..... .+. .+.|+..|.+.++|+||||.+++++..+ ..+||+.++|++++||||.++
T Consensus 84 ~~~--~~~~~~~~~~~---g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~---~llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 84 EAA--GVPVVETEVVE---GSPSAEEILELAEEEDADLIVVGSRGRSGLSR---LLLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHc--CCCeeEEEEec---CCCcHHHHHHHHHHhCCCEEEECCCCCccccc---eeeehhHHHHHhcCCCCEEEE
Confidence 322 222 2333332 344 6999999999999999999998755533 589999999999999998654
No 51
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.87 E-value=8.6e-05 Score=82.26 Aligned_cols=125 Identities=11% Similarity=0.000 Sum_probs=79.0
Q ss_pred cccEEEEEccCCcchHHHHHHHHHhhcCC--CeEEEEEEEeecCCcccc-hhhhhhHHHHHHHHHhhcCC-----CCCEE
Q 003256 627 FCYNVAVFFIGGPDDREAMALVSHMSSNP--GVRITLSRIYLEENLVEE-EDDKCLDEVVMNDFMASNFG-----NPNVV 698 (836)
Q Consensus 627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~--~~~Ltvvrv~~~~~~~~~-~~e~~~d~~~l~~~~~~~~~-----~~~v~ 698 (836)
.++||+||++|++.++.|+++|..+|+.. +++++++|+++....... +...+..++.+++.++.... ...+.
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~ 83 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVT 83 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCc
Confidence 46899999999999999999999999884 699999999975322111 11112223344444433211 12344
Q ss_pred EEEEEcC-------ChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCC
Q 003256 699 CRRIDAN-------DSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADF 761 (836)
Q Consensus 699 y~e~~v~-------~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~ 761 (836)
+....+. .|....++++.+ +.++||||||..-.. |= --|-|.++.-.|++.+.
T Consensus 84 ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~------~~----~~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 84 IETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP------GG----TAPMLQPLERELARAGI 144 (357)
T ss_pred eEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC------CC----CCcccchHHHHHHhcCC
Confidence 4433332 133333444443 367999999998654 21 13568888889998755
No 52
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.85 E-value=0.00013 Score=70.35 Aligned_cols=133 Identities=15% Similarity=0.135 Sum_probs=86.9
Q ss_pred cccEEEEEcc-CCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc-------c-------hhhhhhHHHHHHHHHhhc
Q 003256 627 FCYNVAVFFI-GGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE-------E-------EDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 627 ~~~~I~v~f~-Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~-------~-------~~e~~~d~~~l~~~~~~~ 691 (836)
..++|+++.+ |.+..+.|+..|..++...+..++++++.+...... . .......++.+++.+...
T Consensus 4 ~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 4 MYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3579999999 999999999999999999999999888886532211 0 111233345555555443
Q ss_pred CCCCCEEEEEEEcCChHHH-HHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEE
Q 003256 692 FGNPNVVCRRIDANDSNQL-VNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVL 769 (836)
Q Consensus 692 ~~~~~v~y~e~~v~~g~~~-~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvL 769 (836)
...+ +...+..+..|... .+.+... ..++||++||++++. ++.+ -.||...+.++. .++++||
T Consensus 84 ~~~~-~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~------~l~~----~llGsvs~~v~~----~~~~pVl 148 (154)
T COG0589 84 EAAG-VPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRS------GLSR----LLLGSVAEKVLR----HAPCPVL 148 (154)
T ss_pred HHcC-CCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCc------cccc----eeeehhHHHHHh----cCCCCEE
Confidence 2222 11112222233332 2222222 247999999998765 5544 379999999996 5899999
Q ss_pred EEeec
Q 003256 770 VIQSV 774 (836)
Q Consensus 770 vvqq~ 774 (836)
|++..
T Consensus 149 vv~~~ 153 (154)
T COG0589 149 VVRSE 153 (154)
T ss_pred EEccC
Confidence 99864
No 53
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.78 E-value=0.027 Score=63.27 Aligned_cols=316 Identities=16% Similarity=0.118 Sum_probs=161.0
Q ss_pred CCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHH
Q 003256 73 KQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIV 152 (836)
Q Consensus 73 ~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~ 152 (836)
.+|.++-.++.|+++.. +|.++ ++...+..+.+.+..+-+-+++.=++.|+++++|.++|.+.. +..-.+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHH
Confidence 37888888889999887 55541 122457788888888888888888899999999988887543 333345
Q ss_pred HHHHHHHHHHHhhccc-cccchHHHHHHHhhccc-----c-HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-
Q 003256 153 PLLISLLVGHREQYKI-PRIHDQGISISFVASKC-----A-YPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL- 224 (836)
Q Consensus 153 p~~lg~~~~~~l~~~~-~~~~~~sl~lg~~ls~T-----s-~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~- 224 (836)
..++|..+++++.... .+ +..-++.+++.| . +..+... ++. + ..+.-+....|.++.-+.+.
T Consensus 94 g~viG~~va~~l~~~~l~~---~~wk~ag~l~gsyiGGs~N~~Av~~a---l~~---~-~~~~~a~~aaDnv~~~~~~~~ 163 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGP---EGWKIAGMLAGSYIGGSVNFVAVAEA---LGV---S-DSLFAAALAADNVVMALWFAF 163 (378)
T ss_pred HHHHHHHHHHHHHhhcccc---hHHHHHHHHHhcccCchhHHHHHHHH---HCC---C-HHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666655433 21 221122222221 1 2222222 232 1 23333333344444444443
Q ss_pred HHHhhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCchHHHHHHHHHHHHHHHHHH----Hh---
Q 003256 225 MAPLSKAKYR-SVAIRIELSLCAMSLFTFLVLWPTIQWIIRR--IPERKPVKDFYIVAILTGALVMAVACD----SM--- 294 (836)
Q Consensus 225 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r--~~~~~~~~e~~~~~il~~~l~~~~iae----~~--- 294 (836)
+..+...... ......--... ...-....+. ..++++.. ..+...+.+.+....+++ ++
T Consensus 164 l~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~la~~l~~~ 232 (378)
T PF05684_consen 164 LLALPPFARKFDRWTKADTSSI----------EALEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHALAAWLPPL 232 (378)
T ss_pred HHHHhhhhHHhhhccCCCcccc----------chhhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322210000 00000000000 0000000000 00111111 223334444443333333 33
Q ss_pred --ch----hHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Q 003256 295 --RV----NYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGK 368 (836)
Q Consensus 295 --G~----~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K 368 (836)
+. -.++-....|++.... |..+.+ .--+.+ ..+++-+||+.+|+..|+..+.+ ..+ .+++.++.+..-
T Consensus 233 ~~~~~~~~~~il~~tt~~l~~~~~-~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~-ap~--~~l~~~i~l~iH 306 (378)
T PF05684_consen 233 FAGISSSTWLILTVTTLGLATSFP-PFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLD-APS--LFLFGFIILAIH 306 (378)
T ss_pred HhhccccHHHHHHHHHHHHHHhcc-chhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHH-hHH--HHHHHHHHHHHH
Confidence 11 1233344555555433 444433 233343 56788899999999999988863 222 223334445667
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHH
Q 003256 369 VVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNL 426 (836)
Q Consensus 369 ~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~l 426 (836)
.+..+..++++|.++.+...-+- =|.-|.........++...++.+.+...++-+++
T Consensus 307 ~~l~l~~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~pgvL~gvlGyai 363 (378)
T PF05684_consen 307 LLLMLILGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPPGVLMGVLGYAI 363 (378)
T ss_pred HHHHHHHHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 88888899999999977655544 4667776666666666655555555444444433
No 54
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.71 E-value=0.0063 Score=65.34 Aligned_cols=254 Identities=17% Similarity=0.160 Sum_probs=139.5
Q ss_pred HHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhcc
Q 003256 119 GIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELK 198 (836)
Q Consensus 119 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~ 198 (836)
+..++|-.|-++|++...+..||...+-+.-++++++++.+++.+++..... .-..+.+-.+++.|--..=..+..|.+
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~-Gls~laiiaa~~~~Ng~ly~al~~~yG 129 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIF-GLSGLAIVAAMSNSNGGLYAALMGEFG 129 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccccc-chHHHHHHHHHhcCcHHHHHHHHHHcC
Confidence 4578899999999999988888988888888999999999998888744221 011367777777777666667777777
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHH
Q 003256 199 LLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPERKPVKDFYIV 278 (836)
Q Consensus 199 l~~s~~g~l~ls~a~v~Di~~~~ll~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~ 278 (836)
-++|.|-..+ ..++|.= + +..+.+.. . ++ .+.| . .
T Consensus 130 -~~~d~gA~~~--~sl~~GP-------------------f---~tm~aLga--~--------gL-A~ip----~---~-- 164 (312)
T PRK12460 130 -DERDVGAISI--LSLNDGP-------------------F---FTMLALGA--A--------GL-ANIP----I---M-- 164 (312)
T ss_pred -CHhhhhHHhh--hhhccCc-------------------H---HHHHHHHH--H--------HH-hcCC----h---H--
Confidence 2445543221 1122211 1 11111110 0 00 0011 0 0
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Q 003256 279 AILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALE 358 (836)
Q Consensus 279 ~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~ 358 (836)
..+ +.+=+++.|+++.|..+ ++.+.+++- ..+.+|+|-+..|.++|++.+.+ ..+. .+
T Consensus 165 ~lv----------------~lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~-~G~~-GI 222 (312)
T PRK12460 165 ALV----------------AALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQ-AGLA-GI 222 (312)
T ss_pred HHH----------------HHHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHH-hChH-HH
Confidence 000 02234577778777532 233444442 44589999999999999988852 2222 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH--HHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHH-
Q 003256 359 LIIMAAYIGKVVASILATTCFRTSFRNALLFS--CFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPL- 435 (836)
Q Consensus 359 ~ii~~~~~~K~~~~~l~~~~~~~~~real~lg--~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~pl- 435 (836)
++.++..+.-+..+++..|++|.+.+-+..+| ..-+.=|...++-+.-.+ +-. .+.-++.+.+.++.|.+..|+
T Consensus 223 lL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~--~~~-~~~Ataqvaa~vivTail~P~~ 299 (312)
T PRK12460 223 LLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSL--APV-AAAATAQVAASVIVTAILTPLL 299 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhH--HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333445555666688888888777776 332222222222222111 111 123344444455555555555
Q ss_pred HHHhcccc
Q 003256 436 ISVYYNPQ 443 (836)
Q Consensus 436 v~~l~~p~ 443 (836)
..|++|+.
T Consensus 300 t~~~~k~~ 307 (312)
T PRK12460 300 TSWVAKKE 307 (312)
T ss_pred HHHHHHHh
Confidence 55666543
No 55
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.39 E-value=0.0013 Score=73.13 Aligned_cols=132 Identities=15% Similarity=0.101 Sum_probs=81.9
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhc---
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEG--- 539 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~--- 539 (836)
-|||+|++.+++...+++-+..++...+...+++++|+++..... ...+. .....+++++..++..+.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~----~~~~~-----~~~~~eelle~~~~~~~~~l~ 76 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVD----PEGQD-----ELAAAEELLERVEVWATEDLG 76 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccc----cchhH-----HHHHHHHHHHHHHHHHHHhhh
Confidence 489999999999999999988887542235799999999743111 01000 011123334333333221
Q ss_pred -CCCceeEEEEEEEc-----CCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcce
Q 003256 540 -SNDAVTIQPFIMIS-----QYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTV 607 (836)
Q Consensus 540 -~~~~v~v~~~t~vs-----~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsV 607 (836)
...++.++..+... ..++.++.|+++|++.++|+|||+-.-+-|.. ..+++.+- .=|.++-|.+
T Consensus 77 ~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~---~~~~~~~~-~~~~~~~~~~ 146 (357)
T PRK12652 77 DDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGT---APMLQPLE-RELARAGITY 146 (357)
T ss_pred cccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCC---CcccchHH-HHHHhcCCce
Confidence 12467777666542 12689999999999999999999987663332 22444443 3355565553
No 56
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.30 E-value=0.015 Score=62.24 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhcccccc----chHHHHHHHhhccccHHHHHH
Q 003256 117 IGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRI----HDQGISISFVASKCAYPVLVD 192 (836)
Q Consensus 117 iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~----~~~sl~lg~~ls~Ts~~vv~~ 192 (836)
.-+..++|-.|-++|++...+..||...+-+.-+++.++++.+++.+++.....+ .-..+.+-++++.+-...=..
T Consensus 49 ~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~a 128 (314)
T PF03812_consen 49 PIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLA 128 (314)
T ss_pred HHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHH
Confidence 3455788999999999999999999998889999999999999998887542100 012366777777777666667
Q ss_pred HHHhccccCChhH
Q 003256 193 AISELKLLNSELG 205 (836)
Q Consensus 193 iL~el~l~~s~~g 205 (836)
+..|.+- ++|.|
T Consensus 129 L~~~yGd-~~D~g 140 (314)
T PF03812_consen 129 LMGQYGD-EEDVG 140 (314)
T ss_pred HHHHhCC-HHHhH
Confidence 7777762 44443
No 57
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.22 E-value=0.079 Score=58.37 Aligned_cols=123 Identities=10% Similarity=0.152 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhc-----hhHHHHHHHHHhhccCCCCc--hhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHH
Q 003256 283 GALVMAVACDSMR-----VNYTIGAAMLGIVIPAGPPL--GSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFA 355 (836)
Q Consensus 283 ~~l~~~~iae~~G-----~~~~lGaf~aGl~i~~~~~~--~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~ 355 (836)
.+.+..++.++++ +....++++.|+++.+--+. ..++.++.-+.+.++-+-+|.++.=|++.+..+.+ -...
T Consensus 230 ~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~-l~lp 308 (404)
T COG0786 230 CLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD-LALP 308 (404)
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 3344556666665 57889999999999876322 12234444444567778888777778888777651 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhh-hhhhHHHHHHhh
Q 003256 356 ALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVN-IKGVSELVTFLR 406 (836)
Q Consensus 356 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~-~rG~v~l~~~~~ 406 (836)
..+++.+-..+.-+.+.+...|..|.++..+..-+.-++ .-|...-++++.
T Consensus 309 l~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 309 LLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 333444444445566677777888888877766444333 345566666665
No 58
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.21 E-value=0.23 Score=54.73 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=58.9
Q ss_pred hcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHH
Q 003256 69 LRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLT 148 (836)
Q Consensus 69 l~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 148 (836)
++..+++..+--++.|+++|+......+. ..-| ...-.-+.+-++|++ +.|.+++++++.+.+.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~-Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKKR-GVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hccc-hHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHH
Confidence 35568999999999999999854211111 1111 011233456677766 569999999999999988877776
Q ss_pred HHHHHHHHHHHHH-HHhh
Q 003256 149 VFIVPLLISLLVG-HREQ 165 (836)
Q Consensus 149 ~~l~p~~lg~~~~-~~l~ 165 (836)
.+...+.+++.++ ..++
T Consensus 98 ~v~~~~~~~~~~g~k~l~ 115 (335)
T TIGR00698 98 ILTSTFFLTVFLGSSRLK 115 (335)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 6666666666665 3554
No 59
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.10 E-value=0.18 Score=56.63 Aligned_cols=89 Identities=12% Similarity=0.247 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHhhccCCCC------chhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHH-HHHHHHHH
Q 003256 295 RVNYTIGAAMLGIVIPAGPP------LGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALEL-IIMAAYIG 367 (836)
Q Consensus 295 G~~~~lGaf~aGl~i~~~~~------~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~-ii~~~~~~ 367 (836)
.+...+++++.|+++.+..+ ..++..+++ .++.+-+|.+..=+.+++..+. +.+...++ +++-.++.
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~--~~a~Plliil~~q~i~~ 319 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLA--DYALPLLIILAVQTILM 319 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34678999999999986421 223333333 5555556656666778887776 22332333 33333334
Q ss_pred HHHHHHHHHhhcCCChHHHHHHH
Q 003256 368 KVVASILATTCFRTSFRNALLFS 390 (836)
Q Consensus 368 K~~~~~l~~~~~~~~~real~lg 390 (836)
=+...++..+..|.++ |+..++
T Consensus 320 ~~f~~fv~fr~~gkdy-daavm~ 341 (368)
T PF03616_consen 320 VLFAYFVTFRVMGKDY-DAAVMS 341 (368)
T ss_pred HHHHHHHhhhhhCCCh-hHHHHh
Confidence 4455666777888887 555543
No 60
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=96.63 E-value=1.5 Score=48.30 Aligned_cols=331 Identities=15% Similarity=0.146 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCh--hHH-HHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhh
Q 003256 51 VMLQVSLAFSISQILYILLRPLKQPK--FVS-NTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINT 127 (836)
Q Consensus 51 ~llqi~lil~~s~l~~~ll~rl~~P~--iv~-~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~G 127 (836)
...|.++.+.++.+.++++..+++|. ..| -+++|++.+-.... ++ .| ..+-.+|.+.+=-.+|
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-l~------~P-------~~l~~~~q~ilG~~ig 72 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-LP------LP-------RGLFKAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-cc------CC-------hHHHHHHHHHHHHHHh
Confidence 46788889999999999999988764 455 56666666621111 11 12 2344556666667888
Q ss_pred hccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHH
Q 003256 128 VKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQL 207 (836)
Q Consensus 128 le~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l 207 (836)
..+..+.+.. .++-+.+.....+++...+...+|++......+...+ ++|. ++-.......+-+|.| .+.+.-.+
T Consensus 73 ~~~t~s~l~~-l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta-~~gs--~PGgas~m~~iA~d~g-Ad~~~VAl 147 (352)
T COG3180 73 ASLTPSVLDT-LKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA-FLGS--SPGGASAMVSIAQDYG-ADLRLVAL 147 (352)
T ss_pred hhcCHHHHHH-HHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh-hHhc--CCchHHHHHHHHHHhC-CChhHHHH
Confidence 8888876643 3333333344444555555555555543322111112 1211 1111122222224444 23222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCCchHHHHHHH
Q 003256 208 AISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRRIPER------KPVKDFYIVAIL 281 (836)
Q Consensus 208 ~ls~a~v~Di~~~~ll~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r~~~~------~~~~e~~~~~il 281 (836)
..+. +. +.++..+-++.+.... -++..+. .+.....+.+.+
T Consensus 148 ~Q~l---------------------------Rv----l~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~~~l~ 194 (352)
T COG3180 148 MQYL---------------------------RV----LFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLILLLLI 194 (352)
T ss_pred HHHH---------------------------HH----HHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHHHHHH
Confidence 1111 10 0011111112111111 0000000 011111133444
Q ss_pred HHHHHHHHHHHHhch--hHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhH-HHHHH
Q 003256 282 TGALVMAVACDSMRV--NYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRA-FAALE 358 (836)
Q Consensus 282 ~~~l~~~~iae~~G~--~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~-~~~~~ 358 (836)
...++.+.+...+++ ...+|+++.|..+.-.....-++-+-+. .+-.-+.-..+|.++|-..+..... ....+
T Consensus 195 ~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~ 270 (352)
T COG3180 195 LAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILREAKRLLPAIL 270 (352)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHHhHhhcchHH
Confidence 444555555555555 3567888888777765322222222121 2222244567788888766642222 22233
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHH
Q 003256 359 LIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISV 438 (836)
Q Consensus 359 ~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~ 438 (836)
+.++..++.-....++..++.+.++.+++ +| ..|-|.-+++....+.+.. .+.+-+.=++=.++...+.|++.|+
T Consensus 271 v~ii~l~~~~~~~a~ll~~~~~i~~~ta~-La--~sPGGl~~ma~~A~~l~ad--~a~V~a~q~lRll~il~i~p~l~r~ 345 (352)
T COG3180 271 VSIIALMAIAAGMAGLLSWLTGIDLNTAY-LA--TSPGGLDTMAAIAAALGAD--PAFVMALQVLRLLFILLLGPALARF 345 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HH--cCCCcHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555666777777888899998764 33 4788888887766555422 1111111112222223344777777
Q ss_pred hccc
Q 003256 439 YYNP 442 (836)
Q Consensus 439 l~~p 442 (836)
+.+.
T Consensus 346 l~~~ 349 (352)
T COG3180 346 LSKR 349 (352)
T ss_pred HHHH
Confidence 6543
No 61
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.54 Score=51.05 Aligned_cols=147 Identities=13% Similarity=0.125 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHH----HHHHHHhhccccccchHHHHHHHhhccccH
Q 003256 112 QAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLIS----LLVGHREQYKIPRIHDQGISISFVASKCAY 187 (836)
Q Consensus 112 ~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg----~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~ 187 (836)
+.--.+|+.+.|+=.=+++|.+++++..++.-.+ +.+..+-|+++ +++++++....+ ....|.++-.-+
T Consensus 50 sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L-~lsL~~Nwii~P~lm~~la~~fl~~~p-----ey~~GlILlglA- 122 (342)
T COG0798 50 SIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPL-ILSLFVNWIIGPLLMFALAWFFLPDEP-----EYRAGLILLGLA- 122 (342)
T ss_pred ehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHhh-
Confidence 3345578888888888899999998766654322 22333444433 333333332211 222333222222
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 188 PVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYR-SVAIRIELSLCAMSLFTFLVLWPTIQWIIRR 265 (836)
Q Consensus 188 ~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r 265 (836)
|.++-++-=.++.+.+. ..++..-.+||++.+++++ .....-+..+ ...++.++..++..+.+-++.+.+.+++..|
T Consensus 123 pC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k 201 (342)
T COG0798 123 PCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIK 201 (342)
T ss_pred hhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222223333332 3455666789999998887 4332211111 2234444444444444445555555555555
Q ss_pred c
Q 003256 266 I 266 (836)
Q Consensus 266 ~ 266 (836)
.
T Consensus 202 ~ 202 (342)
T COG0798 202 K 202 (342)
T ss_pred h
Confidence 3
No 62
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.53 E-value=1.3 Score=48.14 Aligned_cols=144 Identities=13% Similarity=0.145 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchhhhccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhh----
Q 003256 110 FAQAASTIGGIYFVFINTVKMDKGMIPRTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVA---- 182 (836)
Q Consensus 110 ~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~l---- 182 (836)
.++..-.+.+.++||..|+.+..+++++..++. ......++++-=.++++++..+. .. ..+..|..+
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l~----~~l~~Gl~ll~~~ 108 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--LP----PELAVGLLLLGCC 108 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--CC----HHHHHhHHheeeC
Confidence 333345788999999999999999987654443 33334444444445556555554 11 223333333
Q ss_pred -ccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhh-cccc--h-hHHHHHHHHHHHHHHHHHHHHH
Q 003256 183 -SKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLS-KAKY--R-SVAIRIELSLCAMSLFTFLVLW 256 (836)
Q Consensus 183 -s~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~-~~~~--~-~~~~~~~~~~v~~~~~~~~v~r 256 (836)
+.|+. .+...+. +.+ --++++.+.++.+++.++.- ...+. ++.. + +..++.++..++.-++.+.+.|
T Consensus 109 Pggv~S-~~~t~lA-----kGn-ValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r 181 (319)
T COG0385 109 PGGVAS-NAMTYLA-----KGN-VALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLR 181 (319)
T ss_pred CCchhH-HHHHHHh-----cCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 3333322 222 24567777888888887765 43332 2211 1 4455666666667777788888
Q ss_pred HHHHHHHHHc
Q 003256 257 PTIQWIIRRI 266 (836)
Q Consensus 257 ~~~~~i~~r~ 266 (836)
+......++.
T Consensus 182 ~~~~~~~~~~ 191 (319)
T COG0385 182 PLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHH
Confidence 8887666664
No 63
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.53 E-value=0.79 Score=51.94 Aligned_cols=92 Identities=10% Similarity=0.197 Sum_probs=57.2
Q ss_pred chhHHHHHHHHHhhccCCCCch--hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH-HH
Q 003256 295 RVNYTIGAAMLGIVIPAGPPLG--SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKV-VA 371 (836)
Q Consensus 295 G~~~~lGaf~aGl~i~~~~~~~--~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~-~~ 371 (836)
.+...++|++.|+++.+.-+.. .++.++.-+.+.++.+-+|.+..=+.+++..+. +.+...+++++..++.-+ ..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~--~~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELA--DLAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999998753211 123333444456777777877777888988876 344444444444444333 45
Q ss_pred HHHHHhhcCCChHHHHHH
Q 003256 372 SILATTCFRTSFRNALLF 389 (836)
Q Consensus 372 ~~l~~~~~~~~~real~l 389 (836)
.++.-+..+.+ .|+-.+
T Consensus 322 ~fv~fr~mg~~-ydaaV~ 338 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAVL 338 (398)
T ss_pred HHHhHHhccch-HHHHHH
Confidence 56666777766 666654
No 64
>PRK10490 sensor protein KdpD; Provisional
Probab=96.52 E-value=0.017 Score=72.68 Aligned_cols=123 Identities=8% Similarity=0.019 Sum_probs=84.7
Q ss_pred ccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcC
Q 003256 461 SELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGS 540 (836)
Q Consensus 461 ~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 540 (836)
..-|||||++...+...+++-+..++... ....+++|+.+...+. . .....+++.+.++ +.+..
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~--~a~~~~l~V~~~~~~~--~-----------~~~~~~~l~~~~~-lA~~l 312 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARL--GSVWHAVYVETPRLHR--L-----------PEKKRRAILSALR-LAQEL 312 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhc--CCCEEEEEEecCCcCc--C-----------CHHHHHHHHHHHH-HHHHc
Confidence 45689999999999999999988888653 5688999975321110 0 1112345555554 43333
Q ss_pred CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCC-cceEEE
Q 003256 541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAP-CTVGIF 610 (836)
Q Consensus 541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~Ap-CsVgIl 610 (836)
.+. +... ..+++++.|.++|++++++.||||-+++.+. -..||+.+++++++| -+|-|+
T Consensus 313 Ga~--~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~-----~~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 313 GAE--TATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW-----WRRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred CCE--EEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC-----ccCCCHHHHHHHhCCCCCEEEE
Confidence 332 2222 2468999999999999999999998866332 124699999999997 566554
No 65
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.36 E-value=0.34 Score=52.93 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=68.3
Q ss_pred cccCCChhHHHHhhhceeccccccccccccccccCCCchH-HHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHH
Q 003256 70 RPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMV-FAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLT 148 (836)
Q Consensus 70 ~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~-~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 148 (836)
....++..+--++.|+++|+..++..+.+. | ... .-+.+-++|++ +.|.++++.++.+.+.+.+.+...
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~~----~--Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~ 91 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPARFK----P--GIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIII 91 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHHHH----h--HHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHH
Confidence 346788999999999999973344322111 1 122 23466677766 568999999999999988888887
Q ss_pred HHHHHHHHHHHHH-HHhhccccccchHHHHHHHhhcccc
Q 003256 149 VFIVPLLISLLVG-HREQYKIPRIHDQGISISFVASKCA 186 (836)
Q Consensus 149 ~~l~p~~lg~~~~-~~l~~~~~~~~~~sl~lg~~ls~Ts 186 (836)
.+...+.+++.++ ..++.+.. .+.+++.-.++..
T Consensus 92 ~v~~~~~~~~~lg~r~~~l~~~----~~~Lia~GtsICG 126 (305)
T PF03601_consen 92 VVILTFLLTYWLGRRLFGLDRK----LAILIAAGTSICG 126 (305)
T ss_pred HHHHHHHHHHHHHHHHhCCCHH----HHHHHHhhcccch
Confidence 7777777777766 55554322 3455555555533
No 66
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.27 E-value=0.73 Score=51.83 Aligned_cols=125 Identities=11% Similarity=0.092 Sum_probs=74.7
Q ss_pred HHHHHhchhHHHHHHHHHhhccCCCCchhhH---HHHHHHHHHHHHHHHHHHHhhcc-ccccccchhhHHHHHHHHHHHH
Q 003256 289 VACDSMRVNYTIGAAMLGIVIPAGPPLGSAL---VEKSEAILSNFFLPFFYIHVGQQ-IDIYSINNWRAFAALELIIMAA 364 (836)
Q Consensus 289 ~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l---~~kl~~~~~~~flPlFF~~~Gl~-idl~~l~~~~~~~~~~~ii~~~ 364 (836)
.+...+++|...-..++=.++.-..-..+++ .++...+...-+.+...+-+|+. +|++.+.+.-++. .+++++..
T Consensus 264 ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~ 342 (414)
T PF03390_consen 264 LLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLAT 342 (414)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHH
Confidence 3444566666655544444443332222333 33444555555556666667888 8888775333443 34445556
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHH-HHHHhhhh-hhHHHHHHhhhhhccccc
Q 003256 365 YIGKVVASILATTCFRTSFRNALL-FSCFVNIK-GVSELVTFLRWRQRELID 414 (836)
Q Consensus 365 ~~~K~~~~~l~~~~~~~~~real~-lg~~m~~r-G~v~l~~~~~~~~~~ii~ 414 (836)
.++-.++.++.+++.|+-+-|+-. .|+.|+.+ |.-++++.+.+...+++.
T Consensus 343 Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 343 VLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 677888899999999986666555 56567544 556777777776666543
No 67
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.22 E-value=0.21 Score=53.36 Aligned_cols=86 Identities=8% Similarity=0.084 Sum_probs=60.2
Q ss_pred HHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhcccccc---chH-HHHHHHhhccccHHHHHHHH
Q 003256 119 GIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRI---HDQ-GISISFVASKCAYPVLVDAI 194 (836)
Q Consensus 119 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~---~~~-sl~lg~~ls~Ts~~vv~~iL 194 (836)
+..++|-.|-++|++...+..||...+-+.-++++++++.+++.+++...... ... .+.+-.+++.|--..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 45788999999999998888888888888889999999999998887543100 011 25666666666655555666
Q ss_pred HhccccCChhH
Q 003256 195 SELKLLNSELG 205 (836)
Q Consensus 195 ~el~l~~s~~g 205 (836)
.|.+ -++|.|
T Consensus 131 ~qyG-d~~D~g 140 (314)
T TIGR00793 131 QQYG-TKEEAG 140 (314)
T ss_pred HHcC-CHhhhh
Confidence 6666 234444
No 68
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.20 E-value=0.17 Score=61.04 Aligned_cols=116 Identities=13% Similarity=0.062 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCC-CCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHH
Q 003256 277 IVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAG-PPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFA 355 (836)
Q Consensus 277 ~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~-~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~ 355 (836)
+.+.++.+.++..++..+|++.++|=.++|+++... ..+-.. .+.++.+ .++-+.++...+|+.+|+..+... ..
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~--~~ 85 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-VESILHF-AEFGVVLMLFVIGLELDPQRLWKL--RR 85 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-HHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH--HH
Confidence 344555666777888899999999999999999642 111111 2334444 556666777778999999887521 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhh
Q 003256 356 ALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIK 396 (836)
Q Consensus 356 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~r 396 (836)
.++.+-...++.-++..+..+.+.+.+|..++.+|..+..-
T Consensus 86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~S 126 (621)
T PRK03562 86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALS 126 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 11111111122222333445567789999999998877543
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=96.06 E-value=0.029 Score=70.50 Aligned_cols=123 Identities=8% Similarity=0.060 Sum_probs=83.4
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCCh
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDS 707 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g 707 (836)
..||+|...|+|.++..++.|.|||+..++++++++|.++.....++.+++.-.+.+ ++.+++. .. +... .+
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~-~lA~~lG--a~--~~~~---~~ 321 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSAL-RLAQELG--AE--TATL---SD 321 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHH-HHHHHcC--CE--EEEE---eC
Confidence 468999999999999999999999999999999999987643222222222222334 3555542 22 2222 23
Q ss_pred HHHHHHHHhcc--cCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEee
Q 003256 708 NQLVNAFRSLV--SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQS 773 (836)
Q Consensus 708 ~~~~~~i~~~~--~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq 773 (836)
.++.+.|.+.+ .+.+.||||++++. + | . --|.+.|.|... ..+.-|.||-.
T Consensus 322 ~dva~~i~~~A~~~~vt~IViG~s~~~------~---~--~-~~~s~~~~l~r~---~~~idi~iv~~ 374 (895)
T PRK10490 322 PAEEKAVLRYAREHNLGKIIIGRRASR------R---W--W-RRESFADRLARL---GPDLDLVIVAL 374 (895)
T ss_pred CCHHHHHHHHHHHhCCCEEEECCCCCC------C---C--c-cCCCHHHHHHHh---CCCCCEEEEeC
Confidence 44555555443 66899999999875 2 4 1 247899999986 55678888853
No 70
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=95.99 E-value=0.23 Score=53.40 Aligned_cols=129 Identities=14% Similarity=0.206 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchh-hHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Q 003256 283 GALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGS-ALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELII 361 (836)
Q Consensus 283 ~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~-~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii 361 (836)
.....+.+++.++++.++|-.++|+++.... ++. .-.+.++.+ ..+-+.++....|+++|++.+.+ .+.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~--~~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWK--LRKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHH
Confidence 3455678889999999999999999997531 110 111234444 45556667777899999988762 222222222
Q ss_pred HHHHHHH-HHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhh
Q 003256 362 MAAYIGK-VVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQT 417 (836)
Q Consensus 362 ~~~~~~K-~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~ 417 (836)
...++.- ++..+...++.+.++.+++.+|..+.+-. .-+++.+..|.+..+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~ 133 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPF 133 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChH
Confidence 2233333 34444556778999999999999887543 233444445555544333
No 71
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=95.82 E-value=2.2 Score=46.87 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHhhhccCcchhhhccchh---hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccc-cH
Q 003256 112 QAASTIGGIYFVFINTVKMDKGMIPRTIKKT---YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKC-AY 187 (836)
Q Consensus 112 ~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~T-s~ 187 (836)
+....+++..++|..|+.++.+++++..++. ...-...+++.=++++++...+...........+.+..++-.| +.
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S 109 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVSS 109 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhH
Confidence 3567788888889999999999998754443 3333333333333455555544322220000123333333322 22
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHhhc-ccc-h---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 188 PVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-MAPLSK-AKY-R---SVAIRIELSLCAMSLFTFLVLWPTIQW 261 (836)
Q Consensus 188 ~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~-~~~-~---~~~~~~~~~~v~~~~~~~~v~r~~~~~ 261 (836)
.++ +.+.- +.+ -..++..+.++.++++++.- ...+.. +++ . ...+..++..++.-++.+-+.|+...+
T Consensus 110 ~v~---~T~~A--gGN-~a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~~~~~ 183 (313)
T PF13593_consen 110 SVV---LTRLA--GGN-VALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRRWVPK 183 (313)
T ss_pred HHH---HHHHc--CCC-HHHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 22222 222 24566777788888887765 333222 111 1 223333444444555556666665554
Q ss_pred HHHH
Q 003256 262 IIRR 265 (836)
Q Consensus 262 i~~r 265 (836)
..+|
T Consensus 184 ~~~~ 187 (313)
T PF13593_consen 184 WVAR 187 (313)
T ss_pred HHHH
Confidence 4444
No 72
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.81 E-value=0.33 Score=58.35 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-CchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHH
Q 003256 278 VAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP-PLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAA 356 (836)
Q Consensus 278 ~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~-~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~ 356 (836)
.+.++.+.++..++..+|+++++|=.++|+++.... ..-.. .+.++.+ ..+-+.++...+|+++|+..+.+......
T Consensus 11 ~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~~~~ 88 (601)
T PRK03659 11 VLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQLRRSIF 88 (601)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344445556677888899999999999999986531 11111 1234444 45556666677899999988752221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhh
Q 003256 357 LELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVN 394 (836)
Q Consensus 357 ~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~ 394 (836)
.+....++.-++.......+.+++|..++.+|..+.
T Consensus 89 --~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la 124 (601)
T PRK03659 89 --GVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLA 124 (601)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 111111111111222234456889999998887654
No 73
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.81 E-value=0.31 Score=58.09 Aligned_cols=132 Identities=12% Similarity=0.188 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC-CchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Q 003256 280 ILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP-PLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALE 358 (836)
Q Consensus 280 il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~-~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~ 358 (836)
++..+++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++....|+++|+..+.+.... ..
T Consensus 14 ~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~~~--~~ 89 (558)
T PRK10669 14 GLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVKSI--AI 89 (558)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHhhH--HH
Confidence 3555666778888899999999999999996531 11111 1223333 455555666677999999887522211 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhh
Q 003256 359 LIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQT 417 (836)
Q Consensus 359 ~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~ 417 (836)
...+..++.=++.++......+.++.+++.+|..++.-.. .+++....+.|.++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 90 PGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 1111112222333444456678999999999987765322 34455556666655533
No 74
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.74 E-value=4 Score=45.00 Aligned_cols=156 Identities=12% Similarity=0.071 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHhch--hHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchh-hH
Q 003256 277 IVAILTGALVMAVACDSMRV--NYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNW-RA 353 (836)
Q Consensus 277 ~~~il~~~l~~~~iae~~G~--~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~-~~ 353 (836)
....+..+.+.+++.+.+++ ..++|+++.+.++.......-.+-+.+.. +..-+.-..+|.+++...+.+. ..
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~----~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVN----AAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHH----HHHHHHHHHHHccccHHHHHHHHHH
Confidence 44555566777788888877 46788888887776442211122222222 2222345678999998776532 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHH
Q 003256 354 FAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVT 433 (836)
Q Consensus 354 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~ 433 (836)
+...+...++.+..-.+..++..++.++++.+++. + +.|-|.-|+.+.....+.+.---..+.++=+..+ -.+.|
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L-a--~aPGGl~eM~l~A~~l~~d~~~V~~~q~~Rl~~v--~~~~p 307 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL-A--TAPGGLAEMALIALALGADVAFVAAHQVVRLLFV--LLLAP 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--hCCccHHHHHHHHHHcCCChHHHHHHHHHHHHHH--HHHHH
Confidence 33344445555666778888888999999877643 3 5799999988876655543211122222212222 23466
Q ss_pred HHHHHhcc
Q 003256 434 PLISVYYN 441 (836)
Q Consensus 434 plv~~l~~ 441 (836)
++.+++.|
T Consensus 308 ~~~r~~~r 315 (318)
T PF05145_consen 308 FIARWLRR 315 (318)
T ss_pred HHHHHHHH
Confidence 67776654
No 75
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=95.55 E-value=0.73 Score=50.46 Aligned_cols=92 Identities=11% Similarity=0.169 Sum_probs=56.2
Q ss_pred HHHHHH-HHHHHHHHHHHHhhcc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHH-HHHhhhhh
Q 003256 321 EKSEAI-LSNFFLPFFYIHVGQQ-IDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLF-SCFVNIKG 397 (836)
Q Consensus 321 ~kl~~~-~~~~flPlFF~~~Gl~-idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~l-g~~m~~rG 397 (836)
.++..| ...+.-|+.+. +|.. +|+..+.+.-+|.. +++.+...++-..+.++.+|+.|+-+-|+-.. |+.|+.+|
T Consensus 318 ~~l~~F~sk~~t~~Lm~g-iGv~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~G 395 (438)
T COG3493 318 KQLSQFFSKNLTWPLMAG-IGVAYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMG 395 (438)
T ss_pred HHHHHHHHHhhHHHHHHh-hhhccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCC
Confidence 344333 34555565544 4665 78776653344443 33344455677888999999999866666655 58887665
Q ss_pred -hHHHHHHhhhhhccccc
Q 003256 398 -VSELVTFLRWRQRELID 414 (836)
Q Consensus 398 -~v~l~~~~~~~~~~ii~ 414 (836)
.-++++.+.+-..++++
T Consensus 396 GtGDvaVLsAa~RM~Lmp 413 (438)
T COG3493 396 GTGDVAVLSAADRMELMP 413 (438)
T ss_pred CCCchHHhhhcchhcccc
Confidence 45666666665555543
No 76
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.53 E-value=0.46 Score=51.91 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHH----HhchhHHHHHHHHHhhccC-CCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHH
Q 003256 280 ILTGALVMAVACD----SMRVNYTIGAAMLGIVIPA-GPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAF 354 (836)
Q Consensus 280 il~~~l~~~~iae----~~G~~~~lGaf~aGl~i~~-~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~ 354 (836)
.+++.....++++ ..++++.+=|.+.|+++.| .....+...+-++. ....++.+=-+..|.++++..+.+ ..+
T Consensus 6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~-~~k~~Lr~gIVLlG~~l~~~~i~~-~G~ 83 (305)
T PF03601_consen 6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKF-SSKKLLRLGIVLLGFRLSFSDILA-LGW 83 (305)
T ss_pred HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHH-HHHHHHHHHHHHHCccccHHHHHH-hCc
Confidence 3334444444544 3678888889999999998 54444555554543 355778888889999999988762 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhcc--ccchhhHHHHHHHHHHHHHhH
Q 003256 355 AALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRE--LIDVQTYSVLVLTNLAVTAIV 432 (836)
Q Consensus 355 ~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~--ii~~~~~~~~vl~~lv~t~i~ 432 (836)
......++..++.=.++.++..+.+|++.+.+..+|...+.=|...++...-..+.+ -+.-.+-.+.++.+ +..++.
T Consensus 84 ~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~-vam~~~ 162 (305)
T PF03601_consen 84 KGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGT-VAMFLY 162 (305)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHH-HHHHHH
Confidence 222233333333344444555599999999999999988877776666655444332 12222222222222 223444
Q ss_pred HHHHHHhccccchh
Q 003256 433 TPLISVYYNPQRRL 446 (836)
Q Consensus 433 ~plv~~l~~p~~~~ 446 (836)
|.+.+++.-+...+
T Consensus 163 P~l~~~l~l~~~~~ 176 (305)
T PF03601_consen 163 PLLGHALGLSPQQF 176 (305)
T ss_pred HHHHHHhCCCHHHH
Confidence 55555555443333
No 77
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.49 E-value=0.19 Score=49.85 Aligned_cols=113 Identities=22% Similarity=0.286 Sum_probs=76.4
Q ss_pred cccCCChhHHHHhhhceeccccccc-cccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcch---hhhccchhhHH
Q 003256 70 RPLKQPKFVSNTLSGIILGPSFLGR-IKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGM---IPRTIKKTYSV 145 (836)
Q Consensus 70 ~rl~~P~iv~~IlaGillGPs~Lg~-~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~---l~~~~~~~~~i 145 (836)
+++++-...|-+++|+++|- ++. .+.+ . .....+.+.++|+.+|++.+|++--++. +++.+.+...+
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~--~~~~~~~~----~---~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~ 89 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGA--LGRTGPIF----L---PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLL 89 (169)
T ss_pred cceeccccHHHHHHHHHHHH--hhhccCCC----C---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 55666777788899999885 332 1111 1 2456778999999999999999988764 45666777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccchHHHHHH-HhhccccHHHHHHHHHh
Q 003256 146 SLTVFIVPLLISLLVGHREQYKIPRIHDQGISIS-FVASKCAYPVLVDAISE 196 (836)
Q Consensus 146 a~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg-~~ls~Ts~~vv~~iL~e 196 (836)
++.-.++|.++++..++++.+.. .....| .+-+.|++|.+....+.
T Consensus 90 ~~~i~~~~~~~~~~~~~~~~~l~-----~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 90 GVIITLVPLLIALVIGRYLFKLN-----PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHccccCcHHHHHHHHh
Confidence 88777888888888777433221 223333 33466888888766544
No 78
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.45 E-value=0.57 Score=53.31 Aligned_cols=151 Identities=12% Similarity=0.159 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccC-CCC---chhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhh
Q 003256 277 IVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPA-GPP---LGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWR 352 (836)
Q Consensus 277 ~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~-~~~---~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~ 352 (836)
+..+++.+...+++.+.+|+++++|=.++|+++.+ +.. ..++..+-+..+ =.-++...+|+.+|+..+.+..
T Consensus 11 ~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lael----Gvi~LlF~~GLE~~~~~l~~~~ 86 (397)
T COG0475 11 LLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL----GVVFLLFLIGLEFDLERLKKVG 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHH----hHHHHHHHHHHCcCHHHHHHhc
Confidence 44555666677799999999999999999999997 211 223333334443 2333445679999998886222
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHhhcCCChHHHHHHHHHhhhhhhHHH-HHHhhhhhccccchhhHHHHHHHHHHHH
Q 003256 353 AFAALELIIMAAYIGKVVAS--ILATTCFRTSFRNALLFSCFVNIKGVSEL-VTFLRWRQRELIDVQTYSVLVLTNLAVT 429 (836)
Q Consensus 353 ~~~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~real~lg~~m~~rG~v~l-~~~~~~~~~~ii~~~~~~~~vl~~lv~t 429 (836)
... ......+.+..=++.. +... +++.++.+++.+|..+.. .+. +.+.+..|.|...++.-..++.++++.=
T Consensus 87 ~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~---sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~D 161 (397)
T COG0475 87 RSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALAL---SSTAIVLKILMELGLLKTREGQLILGALVFDD 161 (397)
T ss_pred hhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHH---HHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 221 2222222222222222 2222 589999999999987754 333 3344555666666665555544444444
Q ss_pred HhHHHHH
Q 003256 430 AIVTPLI 436 (836)
Q Consensus 430 ~i~~plv 436 (836)
+..-|++
T Consensus 162 i~~i~lL 168 (397)
T COG0475 162 IAAILLL 168 (397)
T ss_pred HHHHHHH
Confidence 3333333
No 79
>TIGR00930 2a30 K-Cl cotransporter.
Probab=95.45 E-value=11 Score=47.78 Aligned_cols=102 Identities=5% Similarity=0.052 Sum_probs=63.6
Q ss_pred CCccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhh
Q 003256 459 PDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAE 538 (836)
Q Consensus 459 ~~~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 538 (836)
++-.-++|+.+.+|++.+.+++++..+...+ . -..+.|+++-+.+. . ..+.++..+..+.+-+
T Consensus 572 knwrPqiLvl~~~p~~~~~Ll~f~~~l~~~~--g-l~i~~~v~~~~~~~-------~-------~~~~~~~~~~~~~~~~ 634 (953)
T TIGR00930 572 KNWRPQCLVLTGPPVCRPALLDFASQFTKGK--G-LMICGSVIQGPRLE-------C-------VKEAQAAEAKIQTWLE 634 (953)
T ss_pred cccCCeEEEEeCCCcCcHHHHHHHHHhccCC--c-EEEEEEEecCchhh-------h-------HHHHHHHHHHHHHHHH
Confidence 4556799999999999999999999997332 2 44566887632110 0 0011112222222212
Q ss_pred cCCCceeEEEEEEEcCCcchHHHHHHHHHhc-----CCcEEEEecCCC
Q 003256 539 GSNDAVTIQPFIMISQYETMHESICKLVKDN-----CITLILLQFIPP 581 (836)
Q Consensus 539 ~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~-----~adlIi~~~h~~ 581 (836)
. -.++.|..+....++.+++-.+.+-. +++.++|||...
T Consensus 635 ~----~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~ 678 (953)
T TIGR00930 635 K----NKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKD 678 (953)
T ss_pred H----hCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccc
Confidence 1 12334444444568999999998876 689999999853
No 80
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.40 E-value=1.2 Score=49.24 Aligned_cols=119 Identities=9% Similarity=0.079 Sum_probs=76.9
Q ss_pred chhHHHHHHHHHhhccCCCCchhhHHHHHHHH---HHHHHHHHHHHHhhcc-ccccccchhhHHHHHHHHHHHHHHHHHH
Q 003256 295 RVNYTIGAAMLGIVIPAGPPLGSALVEKSEAI---LSNFFLPFFYIHVGQQ-IDIYSINNWRAFAALELIIMAAYIGKVV 370 (836)
Q Consensus 295 G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~---~~~~flPlFF~~~Gl~-idl~~l~~~~~~~~~~~ii~~~~~~K~~ 370 (836)
++|+..-+.++|.++...+-..+++.++...+ ...-+.+..++-+|+. +|++.+.+.-++ ..+++++...++-.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~-~~vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSW-QFVVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhch-hHhhhHHHHHHHHHH
Confidence 67888888899998887755666676665544 2222333334445665 777766522223 244555666778888
Q ss_pred HHHHHHhhcCCChHHHHHH-HHHhhhh-hhHHHHHHhhhhhccccc
Q 003256 371 ASILATTCFRTSFRNALLF-SCFVNIK-GVSELVTFLRWRQRELID 414 (836)
Q Consensus 371 ~~~l~~~~~~~~~real~l-g~~m~~r-G~v~l~~~~~~~~~~ii~ 414 (836)
++++.+++.|+-+-|+-.. |+.|+.+ |.-++++.+.+...+++.
T Consensus 282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 9999999999866665554 6677654 556677777666655543
No 81
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.35 E-value=2.3 Score=47.04 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhccCcchhhhccchhhHH---HHHHHH-HHHHHHHHHHHHhhccccccchHHHHHHHhhccccHH-HHH
Q 003256 117 IGGIYFVFINTVKMDKGMIPRTIKKTYSV---SLTVFI-VPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYP-VLV 191 (836)
Q Consensus 117 iGl~~llF~~Gle~d~~~l~~~~~~~~~i---a~~~~l-~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~-vv~ 191 (836)
+++.++||-.|++++++++++..|+...+ -+.+++ .|+ ++++++..+..... .+.+|..+..+.+. +.+
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~~p-----~l~~GliLv~~~Pgg~~S 120 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRDLF-----EYIAGLILLGLARCIAMV 120 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCCCH-----HHHHHHHHHHhcchHHHH
Confidence 45668999999999999998766554332 222332 333 45555554422111 23333333222211 223
Q ss_pred HHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 003256 192 DAISELKLLNSELGQLAISSALLHEIVGLLRLL 224 (836)
Q Consensus 192 ~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~ 224 (836)
.+++.+. +.+.. ++++...++-+++.++.-
T Consensus 121 ~v~T~lA--kGnva-lsv~lt~~stLl~~~~~P 150 (328)
T TIGR00832 121 FVWNQLA--KGDPE-YTLVLVAVNSLFQVFLYA 150 (328)
T ss_pred HHHHHHc--CCCHH-HHHHHHHHHHHHHHHHHH
Confidence 3334433 33332 455566677776665554
No 82
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.23 E-value=0.086 Score=53.43 Aligned_cols=126 Identities=19% Similarity=0.260 Sum_probs=83.2
Q ss_pred HHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcc-----hhhhccchhhHHHHHHHHH
Q 003256 78 VSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKG-----MIPRTIKKTYSVSLTVFIV 152 (836)
Q Consensus 78 v~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~-----~l~~~~~~~~~ia~~~~l~ 152 (836)
++.+++|+++|-..... ....+...+..+.+++|.+|+++--+ .+++.+++++.+.+...+-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34567888888532211 11225678889999999999998654 4666778999999988888
Q ss_pred HHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 003256 153 PLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL 224 (836)
Q Consensus 153 p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~ 224 (836)
+++.+.+++.++..... +++.++.-+.- +.....++.|++ +.++|.++.=+=++-+++++++.-
T Consensus 69 Sllgg~l~~~ll~~~~~----~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P 132 (191)
T PF03956_consen 69 SLLGGLLASLLLGLSLK----ESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIP 132 (191)
T ss_pred HHHHHHHHHHHhcCCHH----HHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877754433 33444433322 223334455543 668888877777777777766554
No 83
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.14 E-value=0.73 Score=50.68 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=38.6
Q ss_pred HHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003256 120 IYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQY 166 (836)
Q Consensus 120 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~ 166 (836)
..++|-.|-.+|++...+..||...+.+.-+.+.++++..++.+++.
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~ 100 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE 100 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence 37889999999999988888888888777788888888777766654
No 84
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.86 E-value=0.3 Score=53.08 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=81.7
Q ss_pred HHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Q 003256 290 ACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKV 369 (836)
Q Consensus 290 iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~ 369 (836)
..+..|.++.+=|.+.|+++...++.+.+...-++. ....++.+=.+..|++++++++.+ -.+. .+.+.+..+..-+
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~f-s~k~LLr~gIvLlG~~ltl~~i~~-~G~~-~v~~~~~~l~~t~ 107 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITF-SSKKLLRLGIVLLGFRLTLSDIAD-VGGS-GVLIIAITLSSTF 107 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhh-hHHHHHHHHHHHHcceeeHHHHHH-cCcc-HHHHHHHHHHHHH
Confidence 344566778899999999999765555455444544 356677777888899999988762 1221 3333444555667
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhh
Q 003256 370 VASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQ 409 (836)
Q Consensus 370 ~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~ 409 (836)
+.++...+++|++++.++.+|..-+.=|...++...-..+
T Consensus 108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvik 147 (334)
T COG2855 108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVIK 147 (334)
T ss_pred HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcCC
Confidence 7777778899999999999998877777766666554433
No 85
>PRK05326 potassium/proton antiporter; Reviewed
Probab=94.83 E-value=0.48 Score=56.55 Aligned_cols=117 Identities=9% Similarity=0.073 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCc--hhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHH
Q 003256 279 AILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPL--GSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAA 356 (836)
Q Consensus 279 ~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~--~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~ 356 (836)
+++++..+++.++..+|++.+++-.++|+++.....- ...-.+-. .....+.+++.....|+++|+..+. ..+..
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~-~~i~~l~L~~iLF~~Gl~~~~~~l~--~~~~~ 89 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLA-YLVGNLALAVILFDGGLRTRWSSFR--PALGP 89 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHH-HHHHHHHHHHHHHcCccCCCHHHHH--HHHHH
Confidence 3344455566777788999999999999998764211 01111223 3346788888888899999998886 33333
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhcCCChHHHHHHHHHhhhhhh
Q 003256 357 LELIIMAAYIGKV-VASILATTCFRTSFRNALLFSCFVNIKGV 398 (836)
Q Consensus 357 ~~~ii~~~~~~K~-~~~~l~~~~~~~~~real~lg~~m~~rG~ 398 (836)
+..+....++.-. +.++.+.++.+++|.+++.+|..+++-..
T Consensus 90 ~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~ 132 (562)
T PRK05326 90 ALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA 132 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence 3333333332222 33445556779999999999988775543
No 86
>PRK03818 putative transporter; Validated
Probab=94.52 E-value=0.49 Score=56.14 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHh-cccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhcc
Q 003256 52 MLQVSLAFSISQILYILL-RPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKM 130 (836)
Q Consensus 52 llqi~lil~~s~l~~~ll-~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~ 130 (836)
++-+++.+.++.+++.+= +.+++- +.|-+++|+++|-. +. .+ ..-. .......+.++|+.+|+|.+|++.
T Consensus 8 ~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~--~~--~~-~~~~---~~~~~~~~~~~gl~lFv~~vGl~~ 78 (552)
T PRK03818 8 VSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHF--VS--QF-GLTL---DSDMLHFIQEFGLILFVYTIGIQV 78 (552)
T ss_pred HHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhcc--cc--cc-Cccc---ChHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444555555421 223344 47888999998852 11 11 0011 245677899999999999999999
Q ss_pred Ccchh---hhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHh
Q 003256 131 DKGMI---PRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISE 196 (836)
Q Consensus 131 d~~~l---~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~e 196 (836)
-++.+ ++.+.+...+++.-.+++.++++.+.++++.... ...=..+-+.|++|.+......
T Consensus 79 Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~G~~aGa~T~tp~l~aa~~~ 142 (552)
T PRK03818 79 GPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLP-----VMLGIFSGAVTNTPALGAGQQI 142 (552)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHhhccccccHHHHHHHHH
Confidence 98765 5555666677777777777776666555543322 1222334466787877666543
No 87
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=94.39 E-value=0.12 Score=45.01 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=39.7
Q ss_pred chHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhh-HHHHHHhccCCcce
Q 003256 557 TMHESICKLVKDNCITLILLQFIPPNEETEGRAACLH-GLNNNVLGYAPCTV 607 (836)
Q Consensus 557 ~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~g-sv~~~Vl~~ApCsV 607 (836)
.+.+.+.+.|++.++|.|++|.|+.|.. +....| ++..++.++++|||
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~---~~~~~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVA---GRRLGASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhh---hhccCchhhhhhcccccCCce
Confidence 6888999999999999999999977433 222455 78899999999996
No 88
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.08 E-value=3 Score=42.15 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhccCcchhhhccchhhH
Q 003256 117 IGGIYFVFINTVKMDKGMIPRTIKKTYS 144 (836)
Q Consensus 117 iGl~~llF~~Gle~d~~~l~~~~~~~~~ 144 (836)
+.+.+.||..|++++++++++..|+...
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~ 29 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL 29 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHH
Confidence 4577899999999999999987766543
No 89
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=93.89 E-value=0.48 Score=56.88 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=80.7
Q ss_pred CccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhc
Q 003256 460 DSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEG 539 (836)
Q Consensus 460 ~~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 539 (836)
...-|||||++.......+++-+..++..- ....+++|+.....+..+ ....+++...++--++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~--~a~~~av~v~~~~~~~~~-------------~~~~~~l~~~~~Lae~- 309 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRL--HAKWTAVYVETPELHRLS-------------EKEARRLHENLRLAEE- 309 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHh--CCCeEEEEEecccccccc-------------HHHHHHHHHHHHHHHH-
Confidence 345699999999999999998887777543 456788997542211110 1122344444443333
Q ss_pred CCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCc
Q 003256 540 SNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPC 605 (836)
Q Consensus 540 ~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApC 605 (836)
..+.+ .+..+ +++.+.|.++|++.++.-||+|-+.+ ..|.....|++.+++++++|-
T Consensus 310 lGae~----~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~---~rw~~~~~~~l~~~L~~~~~~ 366 (890)
T COG2205 310 LGAEI----VTLYG--GDVAKAIARYAREHNATKIVIGRSRR---SRWRRLFKGSLADRLAREAPG 366 (890)
T ss_pred hCCeE----EEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcc---hHHHHHhcccHHHHHHhcCCC
Confidence 22222 22232 69999999999999999999998866 334434558999999999863
No 90
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=93.76 E-value=1.2 Score=49.26 Aligned_cols=124 Identities=11% Similarity=0.019 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHH-----hchhHHHHHHHHHhhccCCC--CchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHH
Q 003256 282 TGALVMAVACDS-----MRVNYTIGAAMLGIVIPAGP--PLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAF 354 (836)
Q Consensus 282 ~~~l~~~~iae~-----~G~~~~lGaf~aGl~i~~~~--~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~ 354 (836)
.+++.+.++++. .++++.+=|.+.|+++.|.. +..+....-++ +....++-+=-+..|+++++.++.+ ..+
T Consensus 12 ~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~-~G~ 89 (335)
T TIGR00698 12 LILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIAD-VGP 89 (335)
T ss_pred HHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHH-hhH
Confidence 334444455443 47888888999999998842 12222222222 3345566666788899999988752 222
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhh
Q 003256 355 AALELIIMAAYIGKVV-ASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWR 408 (836)
Q Consensus 355 ~~~~~ii~~~~~~K~~-~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~ 408 (836)
. .+.+.+.....-+. +.++..+.+|++++.+..+|...+.=|...++...-..
T Consensus 90 ~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i 143 (335)
T TIGR00698 90 N-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVI 143 (335)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhcccc
Confidence 2 22222222333333 45555589999999999998887766766665554433
No 91
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.70 E-value=1.4 Score=53.62 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-h-cCCChHHHHHHHHHhhhhhhH
Q 003256 327 LSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATT-C-FRTSFRNALLFSCFVNIKGVS 399 (836)
Q Consensus 327 ~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~-~-~~~~~real~lg~~m~~rG~v 399 (836)
+..+.+++-....|++++...+. ..|..+..+++.+...-++.+.+.++ + .+++|..++.+|.++++-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lr--r~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYML--KHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 45667777777789999998875 44544434443444444444444444 3 499999999999999886643
No 92
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=93.65 E-value=1.5 Score=54.66 Aligned_cols=108 Identities=8% Similarity=0.030 Sum_probs=59.1
Q ss_pred CCcccEEEEEccCCcchHHHHHHHHHh--hcCCCeEEEEEEEeecCCc-----------c-c-c--hhhhhhHHHHHHHH
Q 003256 625 ANFCYNVAVFFIGGPDDREAMALVSHM--SSNPGVRITLSRIYLEENL-----------V-E-E--EDDKCLDEVVMNDF 687 (836)
Q Consensus 625 ~~~~~~I~v~f~Gg~ddreAL~~A~rm--A~~~~~~Ltvvrv~~~~~~-----------~-~-~--~~e~~~d~~~l~~~ 687 (836)
++...||++++-+-.+-...+.++... .++....+.++|+++-.+. . . . +.+....++.++.|
T Consensus 455 ~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af 534 (832)
T PLN03159 455 HDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAF 534 (832)
T ss_pred CCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHH
Confidence 345679999999666667777776654 3456689999999873210 0 0 0 00111123444444
Q ss_pred HhhcCCCCCEEEEE-EEcCChHHHHHHHHhc--ccCCcEEEEcccCCC
Q 003256 688 MASNFGNPNVVCRR-IDANDSNQLVNAFRSL--VSDNDLVIVGRQQPF 732 (836)
Q Consensus 688 ~~~~~~~~~v~y~e-~~v~~g~~~~~~i~~~--~~~~DLiivG~~~~~ 732 (836)
+.-...++.+.-.. ..+...+.+-+-|... ++..+||+++=|..+
T Consensus 535 ~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~ 582 (832)
T PLN03159 535 ENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQ 582 (832)
T ss_pred HHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCcc
Confidence 32111112333221 2244444455555554 356999999999754
No 93
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=93.42 E-value=0.35 Score=57.97 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=81.8
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCCh
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDS 707 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g 707 (836)
..||+|...|+|.....++.|.|+|+..++++|++++..+......+.+++.-++.+ ++.+++.. .+ . ++. +
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~-~Lae~lGa--e~--~--~l~-~ 319 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENL-RLAEELGA--EI--V--TLY-G 319 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHH-HHHHHhCC--eE--E--EEe-C
Confidence 469999999999999999999999999999999999988754333222222221222 34444421 11 1 122 3
Q ss_pred HHHHHHHHhcc--cCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeec
Q 003256 708 NQLVNAFRSLV--SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSV 774 (836)
Q Consensus 708 ~~~~~~i~~~~--~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~ 774 (836)
.++.++|.+-+ .+.--||+|+++++ .|-+.- -|.+.|.|++. .....|-+|--.
T Consensus 320 ~dv~~~i~~ya~~~~~TkiViG~~~~~---------rw~~~~-~~~l~~~L~~~---~~~idv~ii~~~ 375 (890)
T COG2205 320 GDVAKAIARYAREHNATKIVIGRSRRS---------RWRRLF-KGSLADRLARE---APGIDVHIVALD 375 (890)
T ss_pred CcHHHHHHHHHHHcCCeeEEeCCCcch---------HHHHHh-cccHHHHHHhc---CCCceEEEeeCC
Confidence 44445544443 55788999999875 553221 19999999986 445566666543
No 94
>COG2855 Predicted membrane protein [Function unknown]
Probab=92.79 E-value=18 Score=39.73 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=68.7
Q ss_pred cccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHH
Q 003256 70 RPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTV 149 (836)
Q Consensus 70 ~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~ 149 (836)
..+++|..+--|+.|+++|. +...+. ...+ .-.-.-..+-++|++ +.|.+++++++...+.+.+.+-...
T Consensus 33 ~~~~l~al~lAIllGi~l~~--l~~~~~---~~~~-GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~~ 102 (334)
T COG2855 33 IHLGLSALTLAILLGILLGI--LPQIPA---QTSA-GITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAIT 102 (334)
T ss_pred hhcCchHHHHHHHHHHHHhc--cccchh---hhcc-chhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHHH
Confidence 34679999999999999994 222211 0000 111223345566666 5688999999999999999888888
Q ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHHhhccc
Q 003256 150 FIVPLLISLLVGHREQYKIPRIHDQGISISFVASKC 185 (836)
Q Consensus 150 ~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~T 185 (836)
+...+++++.++.+++.+.. .++++|+-.|+.
T Consensus 103 l~~t~~~~~~lg~~lgld~~----~a~Lia~GssIC 134 (334)
T COG2855 103 LSSTFLFAYFLGKLLGLDKK----LALLIAAGSSIC 134 (334)
T ss_pred HHHHHHHHHHHHHHhCCCHH----HHHHHHccchhh
Confidence 88888888888886665443 355555555543
No 95
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.26 E-value=5 Score=39.33 Aligned_cols=120 Identities=14% Similarity=0.103 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhchh--HHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhh-HHHHH
Q 003256 281 LTGALVMAVACDSMRVN--YTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWR-AFAAL 357 (836)
Q Consensus 281 l~~~l~~~~iae~~G~~--~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~-~~~~~ 357 (836)
+......+++.+.+|+. .++|+++++.++.-.....-.+-+.+.. +-.-+.-..+|.+++...+.+.. .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~----~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLA----LAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHH----HHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 34455566677778875 7889988888877442222222222222 22334456789999987776333 33334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhh
Q 003256 358 ELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRW 407 (836)
Q Consensus 358 ~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~ 407 (836)
....+..+..-++..++..++.++++.+++ ++ ..|-|.-++......
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~ 126 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAE 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHH
Confidence 455555566678888888999999998885 44 468888888775543
No 96
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=92.14 E-value=20 Score=38.84 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhhccCcchhhhccch--hhHHHHH-HH-HHHHHHHHHHHHHhhccccccchHHHHHHHhhcc-ccHHH
Q 003256 115 STIGGIYFVFINTVKMDKGMIPRTIKK--TYSVSLT-VF-IVPLLISLLVGHREQYKIPRIHDQGISISFVASK-CAYPV 189 (836)
Q Consensus 115 ~~iGl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~~-l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~-Ts~~v 189 (836)
.-..+.+.||..|+.++.+++++..++ ....+.. .+ +.|++ +++++.+++.. .....|..+.. +...+
T Consensus 10 ~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~l~------~~~~~glvL~~~~P~~~ 82 (286)
T TIGR00841 10 LLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVFKLP------PELAVGVLIVGCCPGGT 82 (286)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHhCCC------HHHHHHHHheeeCCCch
Confidence 334488899999999999999886653 3333333 33 45544 35555554321 11222222222 11222
Q ss_pred HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 003256 190 LVDAISELKLLNSELGQLAISSALLHEIVGLLRLL 224 (836)
Q Consensus 190 v~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~ 224 (836)
.+.++.+.---| ..++.+...++-+++.+.+-
T Consensus 83 ~s~v~t~~~~gn---~~la~~~~~~stlls~vt~P 114 (286)
T TIGR00841 83 ASNVFTYLLKGD---MALSISMTTCSTLLALGMMP 114 (286)
T ss_pred HHHHHHHHhCCC---HhhhhHHHHHHHHHHHHHHH
Confidence 233444432122 34455555666666665554
No 97
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.57 E-value=0.95 Score=53.89 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=76.7
Q ss_pred ccCCChhHHHHhhhceecccccccc-ccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcch---hhhccchhhHHH
Q 003256 71 PLKQPKFVSNTLSGIILGPSFLGRI-KMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGM---IPRTIKKTYSVS 146 (836)
Q Consensus 71 rl~~P~iv~~IlaGillGPs~Lg~~-~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~---l~~~~~~~~~ia 146 (836)
++.+-...|-+++|+++|- ++.. +.+ +-.| .....++.++|+.+|++.+|++--++. +++.+.+...++
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~--~~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g 484 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTF--GNIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG 484 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCcc--eecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Confidence 4445566788999999986 3331 111 1123 356678999999999999999988765 455666777777
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchHHHHHH-HhhccccHHHHHHHHHhc
Q 003256 147 LTVFIVPLLISLLVGHREQYKIPRIHDQGISIS-FVASKCAYPVLVDAISEL 197 (836)
Q Consensus 147 ~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg-~~ls~Ts~~vv~~iL~el 197 (836)
+.-.++|.++++.+++++.+.. .....| ++-+.|++|.+.......
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 485 IVVTILPLIITMLIGKYVLKYD-----PALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHhhccCCCcHHHHHHHHhc
Confidence 7777788888887775433221 224444 446778888887765543
No 98
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.53 E-value=0.84 Score=54.34 Aligned_cols=94 Identities=9% Similarity=0.152 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHh-cccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchh
Q 003256 57 LAFSISQILYILL-RPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMI 135 (836)
Q Consensus 57 lil~~s~l~~~ll-~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l 135 (836)
+++.++++++.+= +.+++-.+.|-+++|+++|.. |. + .| +.+.++|+++|+|.+|++.-+..+
T Consensus 17 l~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~--g~-~------i~-------~~v~~~gl~lFvy~vG~~~Gp~Ff 80 (562)
T TIGR03802 17 LSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQL--GI-Q------ID-------PGVKAVFFALFIFAIGYEVGPQFF 80 (562)
T ss_pred HHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhc--CC-C------CC-------hHHHHHHHHHHHHHhhhccCHHHH
Confidence 3444444444332 346677788999999999963 32 0 11 136789999999999999999876
Q ss_pred hhccc---hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003256 136 PRTIK---KTYSVSLTVFIVPLLISLLVGHREQY 166 (836)
Q Consensus 136 ~~~~~---~~~~ia~~~~l~p~~lg~~~~~~l~~ 166 (836)
+.-+| +-..+++.-.++.+++.++++++++.
T Consensus 81 ~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~ 114 (562)
T TIGR03802 81 ASLKKDGLREIILALVFAVSGLITVYALAKIFGL 114 (562)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 54444 44444444444444444555554443
No 99
>PRK04972 putative transporter; Provisional
Probab=91.41 E-value=0.81 Score=54.38 Aligned_cols=120 Identities=20% Similarity=0.210 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHH-hcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcc
Q 003256 55 VSLAFSISQILYIL-LRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKG 133 (836)
Q Consensus 55 i~lil~~s~l~~~l-l~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~ 133 (836)
+++.+.++.+++.+ ++.+++-...|-+++|+++|-. |.- .| ..+.++|+.+|+|.+|++.-+.
T Consensus 17 lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~--~~~-------~~-------~~~~~~gl~lF~~~vG~~~Gp~ 80 (558)
T PRK04972 17 LFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQ--HFS-------IN-------TDALNLGFMLFIFCVGVEAGPN 80 (558)
T ss_pred HHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhC--CCC-------CC-------hHHHHHHHHHHHHHHhhhhhHH
Confidence 33344444444443 2456677778999999999963 320 11 1235899999999999999886
Q ss_pred hh---hhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHH
Q 003256 134 MI---PRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAIS 195 (836)
Q Consensus 134 ~l---~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~ 195 (836)
.+ ++.+.+...+++...++++++++.++++++.... ...=..+-+.|++|.+.....
T Consensus 81 F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 81 FFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDIG-----LTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHhhccccCcHHHHHHHH
Confidence 54 5555666677777777777777776666543322 122223345577777766544
No 100
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=91.20 E-value=2.6 Score=49.89 Aligned_cols=117 Identities=18% Similarity=0.283 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchh-hHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Q 003256 280 ILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGS-ALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALE 358 (836)
Q Consensus 280 il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~-~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~ 358 (836)
.++.+.+...+++.+++++.++-+++|+++...+.... .+.. .....+++|......|+++|...+. ..+..+.
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~---~~~~~~~Lp~lLF~~g~~~~~~~l~--~~~~~i~ 80 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR---EIVLFLFLPPLLFEAAMNTDLRELR--ENFRPIA 80 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH---HHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHH
Confidence 33344455566777888888888888888764311110 1111 1223478888888889999998886 3333232
Q ss_pred HHHHHHHH-HHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHH
Q 003256 359 LIIMAAYI-GKVVASILATTCFRTSFRNALLFSCFVNIKGVSEL 401 (836)
Q Consensus 359 ~ii~~~~~-~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l 401 (836)
.+.+...+ .-.+.++...+..++||..++.+|.++++...+..
T Consensus 81 ~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 81 LIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 33222222 23333333334678999999999999988776654
No 101
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=90.29 E-value=1.8 Score=42.41 Aligned_cols=114 Identities=12% Similarity=0.138 Sum_probs=66.4
Q ss_pred CChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccc----hhhHHHHHH
Q 003256 74 QPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIK----KTYSVSLTV 149 (836)
Q Consensus 74 ~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~----~~~~ia~~~ 149 (836)
+-...+-+++|+++|- ++...... +-.| ......+.++|+.+|++.+|++--.+.+..-.+ ....++..-
T Consensus 21 LG~~~G~L~vgL~~G~--~~~~~p~~-~~~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGH--FGATGPLT-WYIP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred ecccHHHHHHHHHHHh--ccccCCcc-eecC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 3346788999999986 34321110 1122 346778899999999999999998866543222 233344444
Q ss_pred HHHHHHHHHHHHHHhhccccccchHHHHHHH-hhccccHHHHHHHHHhcc
Q 003256 150 FIVPLLISLLVGHREQYKIPRIHDQGISISF-VASKCAYPVLVDAISELK 198 (836)
Q Consensus 150 ~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~-~ls~Ts~~vv~~iL~el~ 198 (836)
.++|.+++..++.++.+.. .....|+ +=+.|++|.+....+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~-----~~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 95 TVVPTLLVAVALIKLLRIN-----YALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHHhCCC-----HHHHHHHHhccccChHHHHHHHHHhc
Confidence 4455555555544332211 2233333 456788888877655443
No 102
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=88.24 E-value=4.1 Score=45.86 Aligned_cols=114 Identities=10% Similarity=0.052 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhhccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH-HHhhhhhhH-HHHHH
Q 003256 328 SNFFLPFFYIHVGQQIDIYSINNW-RAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFS-CFVNIKGVS-ELVTF 404 (836)
Q Consensus 328 ~~~flPlFF~~~Gl~idl~~l~~~-~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg-~~m~~rG~v-~l~~~ 404 (836)
.++|+-.||..+|+..++..+.+. ........+.....+...+.....+..++.++.-.+..| ..+ ..|+- +.++.
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f-~GGhGTAaa~g 144 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGF-TGGHGTAAAFG 144 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccc-cCCccHHHHHH
Confidence 456777899999999998877522 222222222223334566555555677788776555443 222 22332 33334
Q ss_pred hhhhhc-cccchhhHH--HHHHHHHHHHHhHHHHHHHhccc
Q 003256 405 LRWRQR-ELIDVQTYS--VLVLTNLAVTAIVTPLISVYYNP 442 (836)
Q Consensus 405 ~~~~~~-~ii~~~~~~--~~vl~~lv~t~i~~plv~~l~~p 442 (836)
....+. |.-+..... ...+..+.-.++-.|+.+++.|+
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk 185 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRK 185 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444444 554333322 22333444456678999987753
No 103
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=87.72 E-value=37 Score=35.18 Aligned_cols=110 Identities=14% Similarity=0.129 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhh
Q 003256 317 SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIK 396 (836)
Q Consensus 317 ~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~r 396 (836)
+.+..-+++-+-.+..|+| =+++.+. ..|..+..-++++.+.-++.+++.+++++.+.. +..+ +.||
T Consensus 62 ~~i~~lLgPAtVAlAvPLY-------kq~~~ik--~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~S--l~Pk 128 (230)
T COG1346 62 QWINFLLGPATVALAVPLY-------KQRHLIK--RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LILS--LLPK 128 (230)
T ss_pred HHHHHHHHHHHHHHhhHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHH--hccc
Confidence 4444555555556666766 2333443 456555555666667778888888999988753 3333 4699
Q ss_pred hhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 003256 397 GVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVY 439 (836)
Q Consensus 397 G~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l 439 (836)
....-+...+..+.|-+.+-+-..++++-++-+.+.+++++++
T Consensus 129 SvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 129 SVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred ccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888888888888877666666667777566666677765
No 104
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=87.19 E-value=37 Score=35.47 Aligned_cols=108 Identities=8% Similarity=0.068 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhh
Q 003256 319 LVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGV 398 (836)
Q Consensus 319 l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~ 398 (836)
+..-+.+-+-.+..|+| -+...+. +.|..+.+-++++.+.-++++++.++++|.+.. +. ..|.+|..
T Consensus 67 l~~lLgPAtVALAvPLY-------~q~~~lk--~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~--~~--~Sl~pKSV 133 (232)
T PRK04288 67 ISFFLEPATIAFAIPLY-------KKRDVLK--KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA--VM--ASMLPQAA 133 (232)
T ss_pred HHHHHHHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHhhHhh
Confidence 34445555555666666 2333443 445545555556666677778888888888752 33 33579999
Q ss_pred HHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 003256 399 SELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVY 439 (836)
Q Consensus 399 v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l 439 (836)
..=+...+..+.|-+..-.-..++++-++-.++.+++++++
T Consensus 134 TtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 134 TTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 98888888888887665555556666666555566666664
No 105
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=86.83 E-value=3.9 Score=44.41 Aligned_cols=110 Identities=19% Similarity=0.300 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHh
Q 003256 327 LSNFFLPFFYIHVGQQIDIYSIN-NWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFL 405 (836)
Q Consensus 327 ~~~~flPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~ 405 (836)
.++++=|+-|.-+|..+|+..+. ++... ++-..+=++ +..+++.+...|++.+|+-.+|.+=..-|-.++.+.+
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllanP~~~----llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLANPKTL----LLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhCHHHH----HHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence 46788888999999999998775 33321 111122222 2345566677799999999999998888888887766
Q ss_pred hhhh--ccccchhhHHHHHHHHHHHHHhHHHHHHHhccccch
Q 003256 406 RWRQ--RELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRR 445 (836)
Q Consensus 406 ~~~~--~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p~~~ 445 (836)
..-. .+-|.-..|+= ++++ =.+-||++|.+-.+++|
T Consensus 142 ~LAp~LlgpIaVaAYsY---MaLv-PiiqPpimklLttkkeR 179 (360)
T PF03977_consen 142 KLAPHLLGPIAVAAYSY---MALV-PIIQPPIMKLLTTKKER 179 (360)
T ss_pred hhhHHHHHHHHHHHHHH---HHHH-hhhhhHHHHHhcCHHHH
Confidence 4321 23333334433 3333 56789999988754443
No 106
>COG2985 Predicted permease [General function prediction only]
Probab=86.53 E-value=3.3 Score=47.07 Aligned_cols=103 Identities=19% Similarity=0.265 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhccCcch---hhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHH-HhhccccHHHH-
Q 003256 116 TIGGIYFVFINTVKMDKGM---IPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISIS-FVASKCAYPVL- 190 (836)
Q Consensus 116 ~iGl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg-~~ls~Ts~~vv- 190 (836)
++|+++|.+.+|+|--+.. +++.+++-..+++.- ++.+.+++++++..+.. +..+..| .+-+.||+|.+
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~~--~~~~~~Gm~sGAlTsTP~L~ 135 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFGI--DLGLIAGMFSGALTSTPGLG 135 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcCC--CHHHhhhhhcccccCCchhH
Confidence 8999999999999999865 567777776665543 44444555555544442 2222222 22244555554
Q ss_pred --HHHHHhccccCChhH--HHHHHHHHHHHHHHHHHHH
Q 003256 191 --VDAISELKLLNSELG--QLAISSALLHEIVGLLRLL 224 (836)
Q Consensus 191 --~~iL~el~l~~s~~g--~l~ls~a~v~Di~~~~ll~ 224 (836)
..+|++++....-.- ....+.+..--++++++.+
T Consensus 136 aa~~~L~~lg~~~~~~~~~~~gYamaYp~Gil~ii~~~ 173 (544)
T COG2985 136 AAQDILRELGAPSQALDQMGMGYALAYPIGILGIILGA 173 (544)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 556777664311111 2334445555666666665
No 107
>COG3329 Predicted permease [General function prediction only]
Probab=85.95 E-value=22 Score=38.18 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 296 VNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILA 375 (836)
Q Consensus 296 ~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 375 (836)
+++.+.-|+.|++++-.. ..-++-+.+-...+..++--.-..-|+.+.-+.+. .....++.-+.+.++.-++..++.
T Consensus 16 ~sP~llFf~~Gmlia~~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~--a~v~~~~~~~aL~~li~~ia~f~l 92 (372)
T COG3329 16 LSPTLLFFILGMLIAAFK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLT--AMVLPVALGVALGFLIVFIAYFLL 92 (372)
T ss_pred ccchHHHHHHHHHHHHHh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcc--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888877542 11112222222212112211122234444444443 233334444556666778888888
Q ss_pred HhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHH
Q 003256 376 TTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVL 423 (836)
Q Consensus 376 ~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl 423 (836)
.++.+++..|+...+-.-+.-..+.++.+..-++..-+..+-|...++
T Consensus 93 ~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~l 140 (372)
T COG3329 93 RKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAML 140 (372)
T ss_pred HHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 899999999999998877766777777666666655566666554433
No 108
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=85.86 E-value=69 Score=36.82 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=29.9
Q ss_pred HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 003256 187 YPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL 224 (836)
Q Consensus 187 ~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~ 224 (836)
+|++..+.+.+|+.+.+.--.+++++.+.|..+.++-.
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lpv 154 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLPV 154 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccccc
Confidence 58888888888875554556789999999999987654
No 109
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=85.62 E-value=2.6 Score=45.68 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=56.6
Q ss_pred hHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHH
Q 003256 77 FVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLI 156 (836)
Q Consensus 77 iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~l 156 (836)
.+--++.|+++|+. .+++. +.++.-..+++.|+.|..|..+|++.+.+.+...+.+++..+.+.+.+
T Consensus 169 lilpILiGmilGNl----d~~~~---------~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMR---------KFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhcc----chhhH---------HHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 55567888888872 11111 122222334888999999999999999999999999999988888888
Q ss_pred HHHHHHHhh
Q 003256 157 SLLVGHREQ 165 (836)
Q Consensus 157 g~~~~~~l~ 165 (836)
++.+..+++
T Consensus 236 ~~~i~rllg 244 (312)
T PRK12460 236 NIFADRLVG 244 (312)
T ss_pred HHHHHHHhC
Confidence 888887663
No 110
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=85.44 E-value=4.7 Score=42.93 Aligned_cols=108 Identities=11% Similarity=0.069 Sum_probs=62.2
Q ss_pred EccCCcchHHHHHHHHHhhcCCC-eEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEE-E--EcCChHH
Q 003256 634 FFIGGPDDREAMALVSHMSSNPG-VRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRR-I--DANDSNQ 709 (836)
Q Consensus 634 ~f~Gg~ddreAL~~A~rmA~~~~-~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e-~--~v~~g~~ 709 (836)
++.=.|.|+-||+.|.|+.++.+ .++|++.+-++... +++.+++.... +.++....+ . .-.|...
T Consensus 31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~---------~~~~lr~aLAm--GaD~avli~d~~~~g~D~~~ 99 (256)
T PRK03359 31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT---------NAKGRKDVLSR--GPDELIVVIDDQFEQALPQQ 99 (256)
T ss_pred ccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh---------hHHHHHHHHHc--CCCEEEEEecCcccCcCHHH
Confidence 44448999999999999999764 89999999875321 11233332222 222222121 1 1124445
Q ss_pred HHHHHHhc--ccCCcEEEEcccCCC-C----ccccccCCCCCCCCccccccch
Q 003256 710 LVNAFRSL--VSDNDLVIVGRQQPF-S----SRLLEETKPWVEYDELGIIGDM 755 (836)
Q Consensus 710 ~~~~i~~~--~~~~DLiivG~~~~~-~----~~~~~Gl~~w~e~~eLG~igd~ 755 (836)
|..+|.+. ..+||||+.|+..-. . .++++++.+| |-+..+-+.
T Consensus 100 tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~---P~vt~v~~l 149 (256)
T PRK03359 100 TASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNI---PAINGVSKI 149 (256)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCC---CceeeEEEE
Confidence 55555544 135999999997632 1 2344444444 666666654
No 111
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=85.20 E-value=7.4 Score=39.54 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHh
Q 003256 357 LELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFL 405 (836)
Q Consensus 357 ~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~ 405 (836)
.+.+-+..+++-++++++.+++.+++++|++.++..++--...+..+..
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 4556667788999999999999999999999998877766666665544
No 112
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=84.54 E-value=8.8 Score=43.59 Aligned_cols=166 Identities=12% Similarity=0.072 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHhcc--cCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhc
Q 003256 52 MLQVSLAFSISQILYILLRP--LKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVK 129 (836)
Q Consensus 52 llqi~lil~~s~l~~~ll~r--l~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle 129 (836)
+..+.+.+.+++.+...++. +.+|.+++.+++|+++.+. +..... .. -..+.++.++++.+-+++-.+=..
T Consensus 221 l~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni-~~~~~~-----~~-~~~~~i~~I~~~sLdlfl~~Alms 293 (398)
T TIGR00210 221 IALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNP-LSFKKF-----PW-VAERAVSVIGNVSLSLFLAIALMS 293 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHH-HHHhCc-----cc-cchHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666677777777765 7799999999999999873 221110 00 123589999999999999888889
Q ss_pred cCcchhhhccchhhHHHHHHHHHHHHHHHHHHH-HhhccccccchHHHHHHHhhccccHHHH--HHHHHhccccCChhHH
Q 003256 130 MDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGH-REQYKIPRIHDQGISISFVASKCAYPVL--VDAISELKLLNSELGQ 206 (836)
Q Consensus 130 ~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~-~l~~~~~~~~~~sl~lg~~ls~Ts~~vv--~~iL~el~l~~s~~g~ 206 (836)
+++..+....-..+.+.+.+.+...+....+.+ .++..+....-.+-..|..+..|+.++. -.+-++.|-.+...=-
T Consensus 294 L~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~i 373 (398)
T TIGR00210 294 LQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIV 373 (398)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceeh
Confidence 999999999988888888888887765544443 3444322000002456666666655444 2333445543333323
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003256 207 LAISSALLHEIVGLLRLL 224 (836)
Q Consensus 207 l~ls~a~v~Di~~~~ll~ 224 (836)
.=+-.+.+-|++...++.
T Consensus 374 vPlvgaf~id~~n~~~i~ 391 (398)
T TIGR00210 374 VPLVGAFFIDIINALVIK 391 (398)
T ss_pred hhhHHHHHHHHhhHHHHH
Confidence 334557777777666555
No 113
>PRK04972 putative transporter; Provisional
Probab=84.43 E-value=6.5 Score=46.81 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=76.7
Q ss_pred cCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcch---hhhccchhhHHHHH
Q 003256 72 LKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGM---IPRTIKKTYSVSLT 148 (836)
Q Consensus 72 l~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~ 148 (836)
+++-.--|.+++|+++|- ++...... +-.| .....++.++|+.+|+..+|+.--.+. +++.+.+.+.++..
T Consensus 408 ~~LG~agG~L~~gl~~g~--~~~~~~~~-~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~ 481 (558)
T PRK04972 408 FGIGNAAGLLFAGIMLGF--LRANHPTF-GYIP---QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLI 481 (558)
T ss_pred eeccccHHHHHHHHHHHh--ccccCCCc-eeeC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence 334455678899999885 44321111 1123 456778999999999999999877654 45566777778888
Q ss_pred HHHHHHHHHHHHHHHhhccccccchHHHHHH-HhhccccHHHHHHHHHhc
Q 003256 149 VFIVPLLISLLVGHREQYKIPRIHDQGISIS-FVASKCAYPVLVDAISEL 197 (836)
Q Consensus 149 ~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg-~~ls~Ts~~vv~~iL~el 197 (836)
-.++|.++++.+++++.+... ...+| ++-+.|++|.+.......
T Consensus 482 ~t~~~~~~~~~~~~~~~k~~~-----~~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 482 VSLVPVVICFLFGAYVLRMNR-----ALLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred HHHHHHHHHHHHHHHHHcCCH-----HHHHHHHhCCCCCcHHHHHHHhhc
Confidence 888888888888865543322 23444 556778888887665443
No 114
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=84.01 E-value=18 Score=40.04 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHhhccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHH
Q 003256 326 ILSNFFLPFFYIHVGQQIDIYSIN-NWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTF 404 (836)
Q Consensus 326 ~~~~~flPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~ 404 (836)
+.++++=|+-|.-+|..+|+..+. ++....+. -..+=+|-+ .+++.+...|++.+|+-.+|.+=+.-|-.++.+.
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~---gaaAQ~GiF-~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARPWASITV---ALFAEMGTF-ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhChHHHHHH---HHHHHhhHH-HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence 456788899999999999998775 33322110 112222322 3445566779999999999999888888888776
Q ss_pred hhhhh--ccccchhhHHHHHHHHHHHHHhHHHHHHHhccccch
Q 003256 405 LRWRQ--RELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRR 445 (836)
Q Consensus 405 ~~~~~--~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p~~~ 445 (836)
+.... .+-|.-..|+= ++++ =++-||++|.+-.+++|
T Consensus 178 ~kLAp~Llg~IaVAAYsY---MaLV-PiiqPpimklLttkkER 216 (399)
T TIGR03136 178 LILAKDLFVPISIIAYLY---LSLT-YAGYPYLIKLLVPKKYR 216 (399)
T ss_pred HhhhhHhHHHHHHHHHHH---HHHH-hcccchHHHhhcCHHHH
Confidence 64321 23333334433 3333 56789999988754443
No 115
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=83.94 E-value=2.6 Score=36.43 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=28.7
Q ss_pred EEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEe
Q 003256 631 VAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIY 665 (836)
Q Consensus 631 I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~ 665 (836)
|++++.||+|+..++.++.+.+ ..+.+++.+++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 5789999999999999999987 446688877774
No 116
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=83.54 E-value=8 Score=38.76 Aligned_cols=93 Identities=9% Similarity=0.174 Sum_probs=55.1
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCC---
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDAND--- 706 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~--- 706 (836)
+|+|.+-||+|.--.|.+...+.+..+.+++++++-..-.. +...+.++++++.+++. +.+.......
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~-----~s~~~~~~v~~~~~~~~----i~~~~~~~~~~~~ 71 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLRE-----ESDEEAEFVEEICEQLG----IPLYIVRIDEDRK 71 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC-----CHHHHHHHHHHHHHHTT-----EEEEEE--CHCC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc-----ccchhHHHHHHHHHhcC----CceEEEEeeeeec
Confidence 58899999999999999999999999999999999764321 23344567888887652 2222222221
Q ss_pred -h---HHHHH-----HHHhcc--cCCcEEEEcccCC
Q 003256 707 -S---NQLVN-----AFRSLV--SDNDLVIVGRQQP 731 (836)
Q Consensus 707 -g---~~~~~-----~i~~~~--~~~DLiivG~~~~ 731 (836)
. ++... .+.+.+ .++|.++.|.|..
T Consensus 72 ~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~d 107 (182)
T PF01171_consen 72 KGSNIEECARELRYQFLREIAKEEGCNKIALGHHLD 107 (182)
T ss_dssp TTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHH
T ss_pred ccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCC
Confidence 1 22222 233333 5589999999853
No 117
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=82.83 E-value=7.2 Score=39.20 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=41.0
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~ 691 (836)
||+|.+.||.|.--++.++.+.++..+.++.++++-..... +.+.+.+.++++.+.+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~-----~~~~~~~~~~~~~~~~ 57 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP-----ESDEEAEFVQQFCKKL 57 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh-----hHHHHHHHHHHHHHHc
Confidence 58999999999999999999998887888999988643211 1122334555666554
No 118
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=82.58 E-value=9.7 Score=42.95 Aligned_cols=107 Identities=12% Similarity=0.118 Sum_probs=59.8
Q ss_pred HHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHH-HhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003256 300 IGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYI-HVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTC 378 (836)
Q Consensus 300 lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~-~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~ 378 (836)
+...++|.+..+.+-+.++-.+.+..++..+++|.+.. .++-..+...+. .++.+.+...+..+.-++..++..++
T Consensus 10 ~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (385)
T PF03547_consen 10 FLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL---SLWFIPVFAFIIFILGLLLGFLLSRL 86 (385)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445666666555567777888899999999999854 444333333332 23333333333333345555666666
Q ss_pred cCCChHHHH--HHHHHhhhhhhHHHHHHhhhhh
Q 003256 379 FRTSFRNAL--LFSCFVNIKGVSELVTFLRWRQ 409 (836)
Q Consensus 379 ~~~~~real--~lg~~m~~rG~v~l~~~~~~~~ 409 (836)
++.+.++.- .++...+.-|.+.+-+....+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g 119 (385)
T PF03547_consen 87 FRLPKEWRGVFVLAASFGNTGFLGLPILQALFG 119 (385)
T ss_pred cCCCcccceEEEecccCCcchhhHHHHHHHHhc
Confidence 666554433 3344445566666666554443
No 119
>PRK12342 hypothetical protein; Provisional
Probab=82.49 E-value=4.3 Score=43.11 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=60.1
Q ss_pred EEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCC-EEEEEEE--cCChHH
Q 003256 633 VFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPN-VVCRRID--ANDSNQ 709 (836)
Q Consensus 633 v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~-v~y~e~~--v~~g~~ 709 (836)
+++.=.|.|+.||+.|.|+.+ .+.++|++.+-++.. .+++.+++.... +.++ +...... -.|...
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~a---------~~~~l~r~alam--GaD~avli~d~~~~g~D~~a 96 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTVGGSLL---------QNSKVRKDVLSR--GPHSLYLVQDAQLEHALPLD 96 (254)
T ss_pred CCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCChH---------hHHHHHHHHHHc--CCCEEEEEecCccCCCCHHH
Confidence 344458999999999999994 689999999987521 011122322221 2222 2222111 123333
Q ss_pred HHHHHHhcc--cCCcEEEEcccCCCC-----ccccccCCCCCCCCccccccc
Q 003256 710 LVNAFRSLV--SDNDLVIVGRQQPFS-----SRLLEETKPWVEYDELGIIGD 754 (836)
Q Consensus 710 ~~~~i~~~~--~~~DLiivG~~~~~~-----~~~~~Gl~~w~e~~eLG~igd 754 (836)
|..+|...- .+||||+.|+..... .++++.+.+| |-+..+-+
T Consensus 97 ta~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~---P~vt~v~~ 145 (254)
T PRK12342 97 TAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQL---PVINAVSK 145 (254)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCC---CcEeeEEE
Confidence 344444431 359999999986432 3555555555 54444443
No 120
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=81.71 E-value=5.3 Score=39.18 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcccCCC--hhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcch
Q 003256 57 LAFSISQILYILLRPLKQP--KFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGM 134 (836)
Q Consensus 57 lil~~s~l~~~ll~rl~~P--~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~ 134 (836)
+.+.++.+.+.+++++++| ..+|.++++.++.- .|..+ .-.| ..+.+++.+++=-.+|.+++.+.
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~----~~~P-------~~~~~~~qviiG~~iG~~f~~~~ 68 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE----ITLP-------PWLLALAQVVIGILIGSRFTREV 68 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc----CCCC-------HHHHHHHHHHHHHHHHccCCHHH
Confidence 3456777888899999988 66677766666552 22111 0112 23456677777799999999998
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003256 135 IPRTIKKTYSVSLTVFIVPLLISLLVGHREQYK 167 (836)
Q Consensus 135 l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~ 167 (836)
+++..+... .++...++...++...++++.+.
T Consensus 69 l~~~~~~~~-~~l~~~~~~l~~~~~~~~~l~~~ 100 (156)
T TIGR03082 69 LAELKRLWP-AALLSTVLLLALSALLAWLLARL 100 (156)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 876655443 33444555555566666655543
No 121
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=81.53 E-value=11 Score=43.54 Aligned_cols=73 Identities=11% Similarity=0.240 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHhhhhhhHHHHH
Q 003256 329 NFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCF--RTSFRNALLFSCFVNIKGVSELVT 403 (836)
Q Consensus 329 ~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~real~lg~~m~~rG~v~l~~ 403 (836)
.+++|+-....|+++|...+. +.+..+..+.....+...++.....++. ++|+..++.+|.++++-.-+.+.-
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~--~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELR--RVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 566666666679999998886 3343333333334444444444444444 889999999999888877665543
No 122
>PRK03818 putative transporter; Validated
Probab=80.43 E-value=9.2 Score=45.52 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=70.5
Q ss_pred hHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhh----ccchhhHHHHHHHHH
Q 003256 77 FVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPR----TIKKTYSVSLTVFIV 152 (836)
Q Consensus 77 iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~l~ 152 (836)
.-|.+++|+++|- ++...... +-.| ......+.++|+.+|+..+|++--.+.+.. .+.+...+|..-.++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~-~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLY-WFMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCce-eecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4578899999885 33321111 1233 356778899999999999999887765432 456667777777788
Q ss_pred HHHHHHHHHHHhhccccccchHHHHHH-HhhccccHHHHHHH
Q 003256 153 PLLISLLVGHREQYKIPRIHDQGISIS-FVASKCAYPVLVDA 193 (836)
Q Consensus 153 p~~lg~~~~~~l~~~~~~~~~~sl~lg-~~ls~Ts~~vv~~i 193 (836)
|.++++.+++++.+.. ....+| .+-+.|++|.+...
T Consensus 477 ~~~~~~~~~~~~~~~~-----~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAKMN-----YLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHcCC-----HHHHHHHHhccCCCcHHHHHH
Confidence 8888888875543321 224444 45677888887665
No 123
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=79.61 E-value=12 Score=37.87 Aligned_cols=112 Identities=17% Similarity=0.172 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHH-------HHH
Q 003256 51 VMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGI-------YFV 123 (836)
Q Consensus 51 ~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~-------~ll 123 (836)
-+..+.++..++..+..-+.+=|++.----|+.|+++.... |.... -.+...-+..++-+|++ |-.
T Consensus 17 aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg------G~kGlaDi~lfsGiglmGGaMlRDfAI 89 (254)
T TIGR00808 17 AFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG------GEKGLADIAIFGGFGLMGGAMLRDLAI 89 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC------CccccchhhhhcchhhhhhHHHHHHHH
Confidence 34445555555555555555556666666677788775421 11100 01112223333333332 223
Q ss_pred HHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 003256 124 FINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIP 169 (836)
Q Consensus 124 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~ 169 (836)
-..+.|.|.+++||.+..-..--+.+.++||+.|..+++.+++...
T Consensus 90 vaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~Da 135 (254)
T TIGR00808 90 VATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRDA 135 (254)
T ss_pred HHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4567799999999999888877788999999999999999986644
No 124
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=78.95 E-value=39 Score=37.97 Aligned_cols=128 Identities=18% Similarity=0.117 Sum_probs=70.1
Q ss_pred CCcccccchhhhHHHHHHhccCCcc--eEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEE
Q 003256 582 NEETEGRAACLHGLNNNVLGYAPCT--VGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRI 659 (836)
Q Consensus 582 ~g~~~~~~~~~gsv~~~Vl~~ApCs--VgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~L 659 (836)
+|..+-+-.....|.+.|-+.-+.+ |++ |-... + . ...+|.+-+|++++++.|.+... +
T Consensus 192 GGSlENR~Rf~~EVv~aVr~~vg~~~~vg~---Rls~~--------d-----~-~~~~g~~~~e~~~la~~L~~~G~--~ 252 (363)
T COG1902 192 GGSLENRARFLLEVVDAVREAVGADFPVGV---RLSPD--------D-----F-FDGGGLTIEEAVELAKALEEAGL--V 252 (363)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCceEEE---EECcc--------c-----c-CCCCCCCHHHHHHHHHHHHhcCC--c
Confidence 4666766678889999998887764 554 31110 0 0 12238899999999999998854 5
Q ss_pred EEEEEeecCCcccchhhhh---hHHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCC
Q 003256 660 TLSRIYLEENLVEEEDDKC---LDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFS 733 (836)
Q Consensus 660 tvvrv~~~~~~~~~~~e~~---~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~ 733 (836)
..+|+.............. .-..+.+.++... +..+.-.- ...+.+...+++++ +..|||.|||-.-.+
T Consensus 253 d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~--~~pvi~~G-~i~~~~~Ae~~l~~--g~aDlVa~gR~~lad 324 (363)
T COG1902 253 DYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV--RIPVIAVG-GINDPEQAEEILAS--GRADLVAMGRPFLAD 324 (363)
T ss_pred cEEEeecccccCCCCccccccchhHHHHHHHHHhc--CCCEEEeC-CCCCHHHHHHHHHc--CCCCEEEechhhhcC
Confidence 6666665433211111111 0112333344332 12222110 02344444455553 369999999976543
No 125
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=77.73 E-value=27 Score=38.37 Aligned_cols=109 Identities=11% Similarity=0.091 Sum_probs=67.6
Q ss_pred cCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHH-
Q 003256 72 LKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVF- 150 (836)
Q Consensus 72 l~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~- 150 (836)
++-|.+++. ++|+++...... +|.--.+.++.+++...-+-||..|+.++.+.+++..+........-+
T Consensus 180 ~~nP~iia~-i~Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAP-LLSVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHH-HHHHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 577888875 556777653221 233346889999999999999999999998888766666655555544
Q ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHh
Q 003256 151 IVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISE 196 (836)
Q Consensus 151 l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~e 196 (836)
+.|.+. +.++..++... ...-..+.++.+.+++...++.+
T Consensus 250 l~P~i~-~~~~~~~~l~~-----~~~~~~vl~aa~P~a~~~~i~A~ 289 (321)
T TIGR00946 250 VQPAVM-AGISKLIGLRG-----LELSVAILQAALPGGAVAAVLAT 289 (321)
T ss_pred HHHHHH-HHHHHHhCCCh-----HHHHHHHHHHcCChhhHHHHHHH
Confidence 345443 44444443211 22344444555555555556554
No 126
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=76.19 E-value=0.94 Score=51.06 Aligned_cols=110 Identities=19% Similarity=0.315 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhccCCCCch--hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Q 003256 283 GALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLG--SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELI 360 (836)
Q Consensus 283 ~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~--~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~i 360 (836)
.++....+.+.++++..+|-.++|+++.... +. +.-.+.++.+ ..+.+++.....|.++|...+. +.+.....+
T Consensus 7 ~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~--~~~~~~~~~ 82 (380)
T PF00999_consen 7 LAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELR--RNWRRALAL 82 (380)
T ss_dssp ------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG--------------
T ss_pred hHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccc--ccccccccc
Confidence 3444455688899999999999999998772 32 1112334444 5667777777889999999886 233333333
Q ss_pred HHHHHHHHHHH-HHHHHh---hcCCChHHHHHHHHHhhhh
Q 003256 361 IMAAYIGKVVA-SILATT---CFRTSFRNALLFSCFVNIK 396 (836)
Q Consensus 361 i~~~~~~K~~~-~~l~~~---~~~~~~real~lg~~m~~r 396 (836)
.+..++.-++. ++.... ..++++.+++.+|..+.+-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~t 122 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSAT 122 (380)
T ss_dssp -------------------------------TTHHHHTT-
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcc
Confidence 33333333333 444442 4788999999999887644
No 127
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=74.20 E-value=5.5 Score=45.80 Aligned_cols=83 Identities=23% Similarity=0.367 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCcEEEEe---cCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCC---CCCCCCcccEEE
Q 003256 559 HESICKLVKDNCITLILLQ---FIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSN---SAKPANFCYNVA 632 (836)
Q Consensus 559 ~~~I~~~A~~~~adlIi~~---~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~---~~~~~~~~~~I~ 632 (836)
.++||++|+++++|||++| ||........-+..++.+=+.-+..-||..=++-|.+.-.+.. .+--.+...+|.
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIs 120 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNIS 120 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCccee
Confidence 4789999999999999999 6654333232333455555666777899998888886432111 111122345888
Q ss_pred EEccC--Ccch
Q 003256 633 VFFIG--GPDD 641 (836)
Q Consensus 633 v~f~G--g~dd 641 (836)
+|.|+ |.||
T Consensus 121 IPVFsIHGNHD 131 (646)
T KOG2310|consen 121 IPVFSIHGNHD 131 (646)
T ss_pred eeeEEeecCCC
Confidence 89876 6655
No 128
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=74.05 E-value=8.9 Score=37.65 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=48.6
Q ss_pred CcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEc-C--ChHHHHHHH
Q 003256 638 GPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDA-N--DSNQLVNAF 714 (836)
Q Consensus 638 g~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v-~--~g~~~~~~i 714 (836)
.+.|+|+|+.|+++++..+.+++++-+-+... .++.+++...+. +.+++...+-.- . +.+....++
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~----------~~~~l~~~l~~~-G~d~v~~~~~~~~~~~~~~~~a~~l 82 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLGPAEE----------AAEALRKALAKY-GADKVYHIDDPALAEYDPEAYADAL 82 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC----------HHHHHHHHHHST-TESEEEEEE-GGGTTC-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEecchh----------hHHHHhhhhhhc-CCcEEEEecCccccccCHHHHHHHH
Confidence 57899999999999999999999997762111 112223322222 223333222111 1 234456666
Q ss_pred Hhcc--cCCcEEEEcccCC
Q 003256 715 RSLV--SDNDLVIVGRQQP 731 (836)
Q Consensus 715 ~~~~--~~~DLiivG~~~~ 731 (836)
.+.. .++|+|++|.+..
T Consensus 83 ~~~~~~~~~~lVl~~~t~~ 101 (164)
T PF01012_consen 83 AELIKEEGPDLVLFGSTSF 101 (164)
T ss_dssp HHHHHHHT-SEEEEESSHH
T ss_pred HHHHHhcCCCEEEEcCcCC
Confidence 6653 5699999999764
No 129
>PRK10711 hypothetical protein; Provisional
Probab=73.79 E-value=1.2e+02 Score=31.74 Aligned_cols=106 Identities=8% Similarity=0.083 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHH
Q 003256 321 EKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSE 400 (836)
Q Consensus 321 ~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~ 400 (836)
.-+.+-+-.+..|+| =+...+. +.|..+..-+.++.+.-++++++.++++|.+.. +.. .|.+|....
T Consensus 64 ~lLgPAtVALAvPLY-------~q~~~lk--~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~~~--Sl~pkSVTt 130 (231)
T PRK10711 64 DLLQPAVVALAFPLY-------EQLHQIR--ARWKSIISICFIGSVVAMVTGTAVALWMGATPE--IAA--SILPKSVTT 130 (231)
T ss_pred hhhhHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HHhhhhhhH
Confidence 334444445556655 2233333 344444444555666677778888888888643 333 357999988
Q ss_pred HHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 003256 401 LVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVY 439 (836)
Q Consensus 401 l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l 439 (836)
=+...+..+.|-+.+-.-..++++-++-..+.+++++++
T Consensus 131 PIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 131 PIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888888876655444455555555455556666654
No 130
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=72.86 E-value=12 Score=41.66 Aligned_cols=115 Identities=10% Similarity=0.050 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhccccccccch-hhHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhh-HHHHH
Q 003256 327 LSNFFLPFFYIHVGQQIDIYSINN-WRAF-AALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGV-SELVT 403 (836)
Q Consensus 327 ~~~~flPlFF~~~Gl~idl~~l~~-~~~~-~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~-v~l~~ 403 (836)
..+.|+-+||..+|+..++..+.+ +... +.......+...--+++. ..+.+.+.++--++..|-+--.-|+ .+.+.
T Consensus 67 l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi-~la~~lgidpl~gllagsIsl~GGHGtaAA~ 145 (404)
T COG0786 67 LQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGI-GLAKLLGLDPLIGLLAGSISLVGGHGTAAAW 145 (404)
T ss_pred cccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHH-HHHHHcCccHHHHHHhcceeecCCCchHHHH
Confidence 467889999999999999988862 1222 112222222233334444 4456667766555555222112222 34445
Q ss_pred HhhhhhccccchhhH--HHHHHHHHHHHHhHHHHHHHhccc
Q 003256 404 FLRWRQRELIDVQTY--SVLVLTNLAVTAIVTPLISVYYNP 442 (836)
Q Consensus 404 ~~~~~~~~ii~~~~~--~~~vl~~lv~t~i~~plv~~l~~p 442 (836)
.....+.|.-+.... +...+..+.-.++-+|+.+|+.++
T Consensus 146 ~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k 186 (404)
T COG0786 146 GPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKK 186 (404)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHh
Confidence 555666665443222 222333444445668999998753
No 131
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=71.79 E-value=1.3e+02 Score=31.34 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHH
Q 003256 323 SEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELV 402 (836)
Q Consensus 323 l~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~ 402 (836)
+++-+-.+..|+| -+...+. +.|..+..-+.++.+.-+..+++.++.+|.+. .+.. .+.+|....-+
T Consensus 65 LgPAtVALAvPLY-------~~~~~lk--~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~~--Sl~pkSvTtpi 131 (226)
T TIGR00659 65 LGPAVVALAIPLY-------KQLPQIK--KYWKEIILNVAVGSVIAIISGTLLALLLGLGP--EIIA--SLLPKSVTTPI 131 (226)
T ss_pred hHHHHHHHHHHHH-------HhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHH--HhhhHHhhHHH
Confidence 3444445555655 2223333 34444444444555566677778888888873 3333 45799998888
Q ss_pred HHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 003256 403 TFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISVY 439 (836)
Q Consensus 403 ~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l 439 (836)
...+..+.|-..+-.-..++++-++-..+.+++++++
T Consensus 132 Am~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 132 AMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888888876554444455555555555556666665
No 132
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=69.90 E-value=47 Score=37.77 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=64.3
Q ss_pred HHHHHHHhchhHHHHHHHHHhhccCCCCchh-hH-HHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHH
Q 003256 287 MAVACDSMRVNYTIGAAMLGIVIPAGPPLGS-AL-VEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAA 364 (836)
Q Consensus 287 ~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~-~l-~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~ 364 (836)
++.++..+|....+=-...|++....+ .+. +. -..+.+++..+.+.+...-.|++++++.+. ...+....+..+..
T Consensus 22 ~s~~ssrfGvP~LllFl~iGm~aG~dG-lg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r-~a~~palsLATlGV 99 (574)
T COG3263 22 SSLISSRFGVPLLLLFLSIGMLAGVDG-LGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFR-VAAGPALSLATLGV 99 (574)
T ss_pred HHHHHHHcCchHHHHHHHHHHHcCCCc-ccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHH-HHhhhhHHHHHHHH
Confidence 334444556655555555666666542 221 00 023445556666666666779999988775 22233222233333
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHhhhh
Q 003256 365 YIGKVVASILATTCFRTSFRNALLFSCFVNIK 396 (836)
Q Consensus 365 ~~~K~~~~~l~~~~~~~~~real~lg~~m~~r 396 (836)
++.-.+....+.+.++.+|-|++.+|.+.+..
T Consensus 100 l~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgST 131 (574)
T COG3263 100 LITSGLTGVAAAYLLNLDWLEGLLIGAIVGST 131 (574)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHhhccc
Confidence 44455666677788899999999999876543
No 133
>COG2431 Predicted membrane protein [Function unknown]
Probab=69.58 E-value=33 Score=36.52 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=49.1
Q ss_pred hhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchh----hhccchhhHHHHHHHH
Q 003256 76 KFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMI----PRTIKKTYSVSLTVFI 151 (836)
Q Consensus 76 ~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l----~~~~~~~~~ia~~~~l 151 (836)
++.+..+.|+++|-..-... ...+...+..+.+++|.+|.++.=+.+ +.-.|+....++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~-------------~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL-------------NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc-------------cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 56778888888885322111 113456788999999999999872111 1123677777776666
Q ss_pred HHHHHHHHHHHHhhc
Q 003256 152 VPLLISLLVGHREQY 166 (836)
Q Consensus 152 ~p~~lg~~~~~~l~~ 166 (836)
-..+-|...++++..
T Consensus 175 ssliGG~iaa~~l~l 189 (297)
T COG2431 175 SSLIGGLIAAFLLDL 189 (297)
T ss_pred HHHHHHHHHHHHHhc
Confidence 666656555555553
No 134
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=69.03 E-value=11 Score=41.54 Aligned_cols=112 Identities=20% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHhhhhhhH
Q 003256 326 ILSNFFLPFFYIHVGQQIDIYSIN-NWRAFAALELIIMAAYIGKVVASILATTC-----FRTSFRNALLFSCFVNIKGVS 399 (836)
Q Consensus 326 ~~~~~flPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~-----~~~~~real~lg~~m~~rG~v 399 (836)
+.++++=|+.|.-+|..+|+..+. ++..+.+ -..+-+|-+.....+..+ .|++.+|+-.+|.+=+.-|-.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~ll----GaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLL----GAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHH----HHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 346788889999999999998764 3433221 112222222222222222 378999999999988888888
Q ss_pred HHHHHhhhhh--ccccchhhHHHHHHHHHHHHHhHHHHHHHhccccch
Q 003256 400 ELVTFLRWRQ--RELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRR 445 (836)
Q Consensus 400 ~l~~~~~~~~--~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p~~~ 445 (836)
++.+.+..-. .|-|.-..|+= ++++ =++-||++|.+-..++|
T Consensus 207 sIfvsskLAP~Llg~IaVAAYSY---MaLV-PiIQPpimklLTTkkER 250 (433)
T PRK15475 207 AIYLSGKLAPELLGAIAVAAYSY---MALV-PLIQPPIMKALTTETER 250 (433)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHH---HHHH-hcccchHHHhccCHHHh
Confidence 8877664321 23344444443 3333 56789999988744333
No 135
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=68.62 E-value=11 Score=41.45 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhhccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHhhhhhhH
Q 003256 326 ILSNFFLPFFYIHVGQQIDIYSIN-NWRAFAALELIIMAAYIGKVVASILATTC-----FRTSFRNALLFSCFVNIKGVS 399 (836)
Q Consensus 326 ~~~~~flPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~-----~~~~~real~lg~~m~~rG~v 399 (836)
+.++++=|+.|.-+|..+|+..+. ++..+.+ -..+-+|-+.....+..+ .|++.+|+-.+|.+=+.-|-.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~ll----GaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLL----GAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHH----HHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 346788888999999999998764 3433221 112222222222222222 378999999999988888888
Q ss_pred HHHHHhhhhh--ccccchhhHHHHHHHHHHHHHhHHHHHHHhccccc
Q 003256 400 ELVTFLRWRQ--RELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQR 444 (836)
Q Consensus 400 ~l~~~~~~~~--~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p~~ 444 (836)
++.+.+..-. .|-|.-..|+= ++++ =++-||++|.+-..++
T Consensus 207 sIfvsskLAP~Llg~IaVAAYSY---MaLV-PiIQPpimklLTTkkE 249 (433)
T PRK15477 207 AIYLSGKLAPELLGAIAVAAYSY---MALV-PLIQPPIMKALTTEKE 249 (433)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHH---HHHH-hcccchHHHhccCHHH
Confidence 8877664321 23344444443 3333 5678999998874433
No 136
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=68.60 E-value=11 Score=41.45 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhhccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHhhhhhhH
Q 003256 326 ILSNFFLPFFYIHVGQQIDIYSIN-NWRAFAALELIIMAAYIGKVVASILATTC-----FRTSFRNALLFSCFVNIKGVS 399 (836)
Q Consensus 326 ~~~~~flPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~-----~~~~~real~lg~~m~~rG~v 399 (836)
+.++++=|+.|.-+|..+|+..+. ++..+.+ -..+-+|-+.....+..+ .|++.+|+-.+|.+=+.-|-.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~ll----GaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLL----GAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHH----HHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 346788889999999999998764 3433221 112222222222222222 378999999999988888888
Q ss_pred HHHHHhhhhh--ccccchhhHHHHHHHHHHHHHhHHHHHHHhccccc
Q 003256 400 ELVTFLRWRQ--RELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQR 444 (836)
Q Consensus 400 ~l~~~~~~~~--~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p~~ 444 (836)
++.+.+..-. .|-|.-..|+= ++++ =++-||+.|.+-..++
T Consensus 207 sIfvsskLAP~Llg~IaVAAYSY---MaLV-PiIQPpimklLTTkkE 249 (433)
T PRK15476 207 AIYLSGKLAPELLGAIAVAAYSY---MALV-PLIQPPIMKALTTEKE 249 (433)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHH---HHHH-hcccchHHHhccCHHH
Confidence 8877664321 23344444443 3333 5678999998874433
No 137
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=68.17 E-value=39 Score=33.43 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=31.8
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCC--CeEEEEEEEeec
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNP--GVRITLSRIYLE 667 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~--~~~Ltvvrv~~~ 667 (836)
||+|.+-||.|.--++.++.+..++. +.+++.+++-..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58999999999999999998887655 778888888654
No 138
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=67.48 E-value=18 Score=38.49 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=64.9
Q ss_pred EEccCCcchHHHHHHHHHhhc-CCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEE---EEcCChH
Q 003256 633 VFFIGGPDDREAMALVSHMSS-NPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRR---IDANDSN 708 (836)
Q Consensus 633 v~f~Gg~ddreAL~~A~rmA~-~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e---~~v~~g~ 708 (836)
+|+.=.|.|+-|++.|.|+.+ ..+.++|++.+-++.. ++.+.+... .+-++..-.+ ..-.+..
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------~~~lr~aLA--mGaDraili~d~~~~~~d~~ 97 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------EEALREALA--MGADRAILITDRAFAGADPL 97 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------HHHHHHHHh--cCCCeEEEEecccccCccHH
Confidence 344447899999999999999 6999999999987522 112222111 1222222111 1123455
Q ss_pred HHHHHHHhc--ccCCcEEEEcccCCCC-----ccccccCCCCCCCCccccccchhh
Q 003256 709 QLVNAFRSL--VSDNDLVIVGRQQPFS-----SRLLEETKPWVEYDELGIIGDMLA 757 (836)
Q Consensus 709 ~~~~~i~~~--~~~~DLiivG~~~~~~-----~~~~~Gl~~w~e~~eLG~igd~la 757 (836)
.+..+|.+. ..++|||+.|...-.. .++++.+.+| |-+..+-+.-.
T Consensus 98 ~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~---P~~t~v~~i~~ 150 (260)
T COG2086 98 ATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGW---PQVTYVSKIEI 150 (260)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCC---ceeeeEEEEEE
Confidence 566666654 2558999999975421 2333344444 66766666553
No 139
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=66.30 E-value=1.7e+02 Score=32.60 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHhch--hHHHH-HHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchh-
Q 003256 276 YIVAILTGALVMAVACDSMRV--NYTIG-AAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNW- 351 (836)
Q Consensus 276 ~~~~il~~~l~~~~iae~~G~--~~~lG-af~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~- 351 (836)
+....+.+.+..+++.+..|+ ..++| +.++|++..-. ...-.+...+...+ .-+.-..+|..+..+.+...
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~-~~~l~~P~~l~~~~----q~ilG~~ig~~~t~s~l~~l~ 84 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLR-GLTLPLPRGLFKAG----QVILGIMIGASLTPSVLDTLK 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-cccccCChHHHHHH----HHHHHHHHhhhcCHHHHHHHH
Confidence 334445555677788887776 45678 66666665532 11111222222221 22334567888877766533
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhcc
Q 003256 352 RAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRE 411 (836)
Q Consensus 352 ~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ 411 (836)
..|....+++++.+..-.+..|+..|+.+.|..+++. ...|-|..++.... .|.|
T Consensus 85 ~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~---gs~PGgas~m~~iA--~d~g 139 (352)
T COG3180 85 SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFL---GSSPGGASAMVSIA--QDYG 139 (352)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhH---hcCCchHHHHHHHH--HHhC
Confidence 3466666666777777888888888888777766643 34677877776654 4444
No 140
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=65.46 E-value=36 Score=33.85 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=41.3
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~ 691 (836)
+|+|.+.||.|+--++.++.+...+.+.+++++++-..... ....+.+.++++..+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~-----~~~~~~~~~~~~~~~~ 57 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRP-----ESDEEAAFVADLCAKL 57 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCc-----hHHHHHHHHHHHHHHc
Confidence 57899999999999999999988776788998888543211 1123345666666654
No 141
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=65.01 E-value=3.2e+02 Score=33.18 Aligned_cols=122 Identities=12% Similarity=0.109 Sum_probs=69.3
Q ss_pred HhccccchhhhhhhcccccCCCCccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhccccc
Q 003256 438 VYYNPQRRLESIAMGTLQTALPDSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQ 517 (836)
Q Consensus 438 ~l~~p~~~~~~~~~r~i~~~~~~~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~ 517 (836)
.+|+..|||.-.-+..-+|.|-. .-+||.-|+||+..-+++++...+. +..+|++--|.+.+..+..+
T Consensus 537 LiyHQVRKYLL~ld~rkdhVKfW-RPQILLlV~nPrss~~Lirf~N~LK-----KggLYilGHV~~gd~~~~~~------ 604 (945)
T KOG1288|consen 537 LIYHQVRKYLLRLDVRKDHVKFW-RPQILLLVSNPRSSCNLIRFCNDLK-----KGGLYILGHVIVGDDFSASM------ 604 (945)
T ss_pred HHHHHHHHHHHhcchhhhhcccc-cceEEEEecCCcccchHHHHHHhhc-----ccceEEEEEEEecccccccc------
Confidence 45555666643211111233333 4579999999999999999987774 23678887777654321110
Q ss_pred ccccccCchHHHHHHHHHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhc-----CCcEEEEecCCC
Q 003256 518 KTKAMANSTDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDN-----CITLILLQFIPP 581 (836)
Q Consensus 518 ~~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~-----~adlIi~~~h~~ 581 (836)
...++-..++-.+.. ...++.|+.+.-..++-.+|-++.+-. +.+.+|+|||..
T Consensus 605 ------d~l~~q~~~W~s~vd----~~~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d~ 663 (945)
T KOG1288|consen 605 ------DELQQQQRAWLSFVD----DAGIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYDL 663 (945)
T ss_pred ------chhhHHHHHHHHHHH----HhhhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeecC
Confidence 111222233333322 223444555543346777777666643 678999999853
No 142
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=64.54 E-value=88 Score=32.52 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=55.1
Q ss_pred HHHHHHhcccC----CChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhc
Q 003256 63 QILYILLRPLK----QPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRT 138 (836)
Q Consensus 63 ~l~~~ll~rl~----~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~ 138 (836)
.+..++.||.+ .|-+++.++...++=. +|. + +.++. ++.+++..+ +|-.-.-|..-+-=+++.+||+
T Consensus 19 ~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~i-~-Y~~Y~---~g~~~i~~l--LgPAtVAlAvPLYkq~~~ik~~ 89 (230)
T COG1346 19 FAAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FGI-S-YEDYM---KGGQWINFL--LGPATVALAVPLYKQRHLIKRH 89 (230)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHH--cCC-C-HHHHh---cccHHHHHH--HHHHHHHHhhHHHHHHHHHHHH
Confidence 34445556666 4666665554444422 222 1 11111 233444444 3334445555665677889999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003256 139 IKKTYSVSLTVFIVPLLISLLVGHREQYK 167 (836)
Q Consensus 139 ~~~~~~ia~~~~l~p~~lg~~~~~~l~~~ 167 (836)
++....-...+.++.++.+.+++.+++..
T Consensus 90 w~~I~~g~~vGs~~ai~s~~llak~~g~~ 118 (230)
T COG1346 90 WKPILAGVLVGSVVAIISGVLLAKLFGLS 118 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99888777777777777777777777643
No 143
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=63.61 E-value=42 Score=36.61 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------ChHHHHHHHHHhhhhhh
Q 003256 326 ILSNFFLPFFYIHVGQQIDIYSIN-NWRAFAALELIIMAAYIGKVVASILATTCFRT------SFRNALLFSCFVNIKGV 398 (836)
Q Consensus 326 ~~~~~flPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~------~~real~lg~~m~~rG~ 398 (836)
+.++++=|+-|.-+|..+|+..+. ++.... +-..+=++- ..+++.+...|+ +.+|+-.+|.+=..-|-
T Consensus 60 i~~~l~P~LIFlGIGAmtDFgpllanP~~~l----lGaaAQ~Gi-F~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 60 IGSGIAPLLIFMGIGALTDFGPLLANPRTLL----LGAAAQFGI-FATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HhcchHHHHHHHhccHHhhhHHHHhChHHHH----HHHHHHhhH-HHHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 456788899999999999998774 333221 111222222 234455555677 77999999998788888
Q ss_pred HHHHHHhhhhh--ccccchhhHHHHHHHHHHHHHhHHHHHHHhccccc
Q 003256 399 SELVTFLRWRQ--RELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQR 444 (836)
Q Consensus 399 v~l~~~~~~~~--~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p~~ 444 (836)
.++.+.+.... .+-|.-..|+= ++++ =.+-||++|.+-..++
T Consensus 135 t~If~s~~lap~Llg~IaVAAYsY---MaLv-PiiqPpimklLttkke 178 (354)
T TIGR01109 135 TAIYLSGKLAPELLAAIAVAAYSY---MALV-PIIQPPIMKALTSEKE 178 (354)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHHH---HHHH-hcccchHHHhhcChHH
Confidence 88776654221 23333333433 3333 5678999998874433
No 144
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=63.27 E-value=73 Score=35.12 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=75.2
Q ss_pred HHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 003256 300 IGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAF-AALELIIMAAYIGKVVASILATTC 378 (836)
Q Consensus 300 lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~-~~~~~ii~~~~~~K~~~~~l~~~~ 378 (836)
+|+.+++.+.....+..-.....+... ...+--+.+|.+++.+.+.+-..| ....++.+...+.-.+..++..|+
T Consensus 3 lG~~ia~~~~~~~~~~~~~~p~~~r~~----~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ 78 (318)
T PF05145_consen 3 LGPMIAVIIAALFGPLPLRVPRRLRNA----GQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRI 78 (318)
T ss_pred hHHHHHHHHHHHhCCCccCCCHHHHHH----HHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666654433333333334333 334455678999998877543334 334555556666677888888899
Q ss_pred cCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHH-HHHHHHHHHhHHHHHHHhcc
Q 003256 379 FRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVL-VLTNLAVTAIVTPLISVYYN 441 (836)
Q Consensus 379 ~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~-vl~~lv~t~i~~plv~~l~~ 441 (836)
.+++..+++.-+ .|-|..+++... .|.|- |...-+.+ .+=+++...+.|+++.+..+
T Consensus 79 ~~~d~~TA~~~~---~PGg~s~m~~la--~~~ga-d~~~Va~~q~lRl~~Vv~~vP~i~~~~~~ 136 (318)
T PF05145_consen 79 SGLDRATAFFAS---MPGGLSEMVALA--EEYGA-DTRRVALVQSLRLLLVVLLVPFIASLLGG 136 (318)
T ss_pred cCCChhHHHHHc---CCccHHHHHHHH--HHcCC-ChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999888876543 478888877654 55542 22211111 01112223456777777654
No 145
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=62.87 E-value=19 Score=39.29 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=43.4
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCe-EEEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGV-RITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~-~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~ 691 (836)
..+|+|.|.||+|.--.|.++.+.|+..+- ++.|+++--+ -+...--++++|.+..+
T Consensus 27 f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E-------~QYs~TidyV~em~~~~ 84 (407)
T COG3969 27 FPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWE-------AQYSCTIDYVQEMRESY 84 (407)
T ss_pred CCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcch-------hhhhhHHHHHHHHHhcc
Confidence 569999999999999999999999977666 8888876321 12233446888888764
No 146
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=60.45 E-value=2.7e+02 Score=30.77 Aligned_cols=250 Identities=16% Similarity=0.161 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHH------HHHHHHhh
Q 003256 54 QVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGG------IYFVFINT 127 (836)
Q Consensus 54 qi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl------~~llF~~G 127 (836)
++..+.+...+++.-.+|---|.+.-.|-.|+++.+.-+....+ .... ......++.+-+.|+ .++.+-+|
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~--~~~~-~~~~g~l~~~~~~gi~~~l~P~LIF~GIG 80 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMD--QPVG-GGEIGGLQPIYYFGISNGLFPPLIFMGIG 80 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcc--cccc-cCCCChHHHHHHHhhhcchhhHHHHHHHh
Confidence 45555556666666677777899999999999887643221100 0000 001123333333332 34566688
Q ss_pred hccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhh---ccccHHHHHHHHHhccccCChh
Q 003256 128 VKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVA---SKCAYPVLVDAISELKLLNSEL 204 (836)
Q Consensus 128 le~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~l---s~Ts~~vv~~iL~el~l~~s~~ 204 (836)
--+|+.-+..+.|..+.-+..++-+ ...+..+..++.... ++-.+|++- .+|+.=+.. ++.+.-+
T Consensus 81 AmtDFgpllanP~~~llGaaAQ~Gi--f~t~~~A~~lGf~~~----eAAsIgIIGgADGPtsIf~s~------~LAp~Ll 148 (360)
T PF03977_consen 81 AMTDFGPLLANPKTLLLGAAAQFGI--FATFLGAILLGFTPK----EAASIGIIGGADGPTSIFVSS------KLAPHLL 148 (360)
T ss_pred HHHhhHHHHhCHHHHHHHHHHHHhH--HHHHHHHHHhCCCHH----HhhHhhhcccCCCcHHHHHHH------hhhHHHH
Confidence 8999999998888754333333221 122333344443332 333444433 334322221 2111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHc--CCCCCCch-HHH
Q 003256 205 GQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWII----RRI--PERKPVKD-FYI 277 (836)
Q Consensus 205 g~l~ls~a~v~Di~~~~ll~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~i~----~r~--~~~~~~~e-~~~ 277 (836)
|.+++++ -.|...+-.+-+|+++-+. |+. ++.++++. .-+
T Consensus 149 gpIaVaA---------------------------------YsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eki 195 (360)
T PF03977_consen 149 GPIAVAA---------------------------------YSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKI 195 (360)
T ss_pred HHHHHHH---------------------------------HHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHH
Confidence 2211111 1122333344445554433 221 22233332 234
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHH
Q 003256 278 VAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAF 354 (836)
Q Consensus 278 ~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~ 354 (836)
.+-+....+++.+. =.-.+.+|.+++|-.+.+.+ ..+++.+-.+.-..++.--+.-..+|...+-+.+.+++++
T Consensus 196 iFpivv~~~~~ll~--P~a~pLig~Lm~Gnl~rEsg-v~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~tl 269 (360)
T PF03977_consen 196 IFPIVVTILVGLLL--PSAAPLIGMLMFGNLLRESG-VVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQTL 269 (360)
T ss_pred HHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHHH
Confidence 44444444444432 23468899999999999873 3344444443332333222334567777776665545554
No 147
>PRK09903 putative transporter YfdV; Provisional
Probab=60.38 E-value=1e+02 Score=33.80 Aligned_cols=109 Identities=15% Similarity=0.092 Sum_probs=63.0
Q ss_pred cCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHH-
Q 003256 72 LKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVF- 150 (836)
Q Consensus 72 l~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~- 150 (836)
++-|.+++. ++|+++.- +|. + .|..-.+.++.+++...-+-||..|..+....++.. ++.+...+.-.
T Consensus 171 ~~nP~iia~-~~gl~~~l--~~i-~------lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAP-VLATILVL--VGV-K------IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHH-HHHHHHHH--cCC-C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 445777776 45565543 333 1 243446889999999999999999999877665433 33333333333
Q ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhc
Q 003256 151 IVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISEL 197 (836)
Q Consensus 151 l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el 197 (836)
+.|++. .+...+++. . ....-....++.+..++.+.++.+.
T Consensus 240 ~~P~i~-~~~~~~~~l--~---~~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 240 LMPLAL-LLVGMACHL--N---SEHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHHH-HHHHHHcCC--C---cHHHHHHHHHHcccHHHHHHHHHHH
Confidence 356544 333333221 1 1234555666666666666666553
No 148
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=58.95 E-value=66 Score=35.28 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=44.7
Q ss_pred hHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHH-
Q 003256 77 FVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLL- 155 (836)
Q Consensus 77 iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~- 155 (836)
.+|-++.|.+-||.....++.|...+|. =-+.+||...|++-- ++++..++..+.+-..+++.|.+
T Consensus 183 LlGgliIG~~~g~~g~~~i~pf~~~lF~------------G~L~lFLLeMGl~A~-~rL~~l~~~g~~li~Fgi~~Pli~ 249 (327)
T PF05982_consen 183 LLGGLIIGFLAGPEGVESIKPFFVDLFK------------GVLCLFLLEMGLVAA-RRLRDLRKVGWFLIAFGILMPLIN 249 (327)
T ss_pred HHHHHHHhheeCccchhhccchhhccHH------------HHHHHHHHHhhHHHH-HhhHHHHhhhHHHHHHHHHHHHHH
Confidence 4556667777777655444444333332 235677778887652 33444444445555556667765
Q ss_pred --HHHHHHHHhhcccc
Q 003256 156 --ISLLVGHREQYKIP 169 (836)
Q Consensus 156 --lg~~~~~~l~~~~~ 169 (836)
+|..++++++....
T Consensus 250 a~ig~~lg~~~gls~G 265 (327)
T PF05982_consen 250 ALIGIGLGWLLGLSPG 265 (327)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 55566666654443
No 149
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=57.36 E-value=2.4e+02 Score=29.23 Aligned_cols=84 Identities=14% Similarity=0.193 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHh
Q 003256 352 RAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAI 431 (836)
Q Consensus 352 ~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i 431 (836)
+.|..++.-+.++.+.-+..+++.++++|.+.. +..+ +.+|....-+...+..+.|-...-.-..++++-++-..+
T Consensus 75 ~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~~S--l~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~ 150 (215)
T PF04172_consen 75 KNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--IILS--LAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVL 150 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHHH--HHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHh
Confidence 445445555555666677777788888888643 3333 468998888888888887766554444555555554555
Q ss_pred HHHHHHHh
Q 003256 432 VTPLISVY 439 (836)
Q Consensus 432 ~~plv~~l 439 (836)
.+++++++
T Consensus 151 g~~llk~~ 158 (215)
T PF04172_consen 151 GPPLLKLL 158 (215)
T ss_pred HHHHHhHc
Confidence 56666663
No 150
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=56.64 E-value=73 Score=35.45 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=61.5
Q ss_pred HHhccc-CCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhc-cCcchhhhcc-chhh
Q 003256 67 ILLRPL-KQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVK-MDKGMIPRTI-KKTY 143 (836)
Q Consensus 67 ~ll~rl-~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle-~d~~~l~~~~-~~~~ 143 (836)
.+++.+ ++|..+..++.|+++-- +|..|+-.+ .......+++..--...+++-.|+. .|++++.+.. ...+
T Consensus 196 ~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~----~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~v 269 (347)
T TIGR00783 196 GLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIE----EGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFV 269 (347)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHh
Confidence 334433 68999999999999875 555542100 0011222233333334455557886 8999988876 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhcc
Q 003256 144 SVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASK 184 (836)
Q Consensus 144 ~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~ 184 (836)
.+.+.+++.-.+.++.++.+++..+. +.++.-|++++.
T Consensus 270 viiv~~Vlg~ii~s~lvGKllG~YPi---E~aItagLC~~~ 307 (347)
T TIGR00783 270 VICLSVVVAMILGGAFLGKLMGMYPV---ESAITAGLCNSG 307 (347)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCChH---HHHHHHhhhccC
Confidence 44444554445555677777765443 123555556554
No 151
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=56.56 E-value=3e+02 Score=30.04 Aligned_cols=285 Identities=14% Similarity=0.053 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccH
Q 003256 108 MVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAY 187 (836)
Q Consensus 108 ~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~ 187 (836)
....+++-+--+-...++.=++.|.+.+.|-++|.+.+-+. ..+..++|+.+++.+......+... ..=+++-|-|.
T Consensus 55 S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli-~sv~~vlGfIl~yp~~ksf~gd~Wk-a~gmi~gSytG- 131 (384)
T COG5505 55 SPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLI-SSVGTVLGFILAYPLLKSFIGDLWK-AGGMISGSYTG- 131 (384)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHH-HHHHHHHHHHHHHHHHhhhcchHHh-hhhheeeeeeC-
Confidence 45556666655555566666899999999999998766443 3345567777777665444321111 11111111121
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-H-HHhhcccchh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 188 PVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLL-M-APLSKAKYRS----VAIRIELSLCAMSLFTFLVLWPTIQW 261 (836)
Q Consensus 188 ~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~-~-~~~~~~~~~~----~~~~~~~~~v~~~~~~~~v~r~~~~~ 261 (836)
--+....-.+.+..+ .-..+++..-|.++.-++. + +.+......+ ..-..-+... ..-....
T Consensus 132 -GSaNmAAmqaaLeVP--~~~fsatlaaDtv~ySll~~lli~iVpy~~kw~~~tkpdesKL~A~---------~~e~a~~ 199 (384)
T COG5505 132 -GSANMAAMQAALEVP--GEYFSATLAADTVMYSLLFFLLISIVPYKWKWRHYTKPDESKLKAD---------GNEGASA 199 (384)
T ss_pred -CcchHHHHHhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHHhhh---------hhhhhhh
Confidence 111111111222333 3356777788877765444 2 2111000000 0000000000 0000000
Q ss_pred HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHH---------------HHHHHHHhhccCCCCchhhHHHHHHHH
Q 003256 262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYT---------------IGAAMLGIVIPAGPPLGSALVEKSEAI 326 (836)
Q Consensus 262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~---------------lGaf~aGl~i~~~~~~~~~l~~kl~~~ 326 (836)
.-. .+++|.+-..+.+.+...+..+.++..+|-+.. +=.=+.|+++.-. |+++- .-.+++
T Consensus 200 e~y--wKrkp~Sl~D~afl~Gislav~AVa~~Is~~l~~~s~gl~~~~gt~t~v~vsi~gLi~aLt-Pf~~l--pgs~el 274 (384)
T COG5505 200 ESY--WKRKPISLKDIAFLAGISLAVVAVAMKISGYLKSISHGLLTGLGTQTLVLVSITGLIIALT-PFERL--PGSQEL 274 (384)
T ss_pred hhh--hhcCCccHHHHHHHhhHHHHHHHHHHHHHhhccccccccccccceeeehHHHHHHHHHHhC-ccccC--Cchhhh
Confidence 000 011222223333333333333333333222111 1112344444433 33221 011223
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhh
Q 003256 327 LSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLR 406 (836)
Q Consensus 327 ~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~ 406 (836)
..+++-.|++.++...|+..+.....|... .....+...+..+..++.++.+..+-....+ -|..|-.+.-+...
T Consensus 275 -gtv~lY~~v~vias~Ad~~~i~taP~~i~~---gf~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~ 349 (384)
T COG5505 275 -GTVLLYLFVVVIASPADLRLIVTAPLIILF---GFIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAI 349 (384)
T ss_pred -hHHHHHHHHHHhccchhHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHh
Confidence 445677889999999999887632333222 2223345677778888999888876544444 57888888888777
Q ss_pred hhhccccchhh
Q 003256 407 WRQRELIDVQT 417 (836)
Q Consensus 407 ~~~~~ii~~~~ 417 (836)
++....+.+-+
T Consensus 350 A~nr~lv~~gv 360 (384)
T COG5505 350 AKNRELVAPGV 360 (384)
T ss_pred hcCchhcchHH
Confidence 77766555433
No 152
>COG2985 Predicted permease [General function prediction only]
Probab=55.50 E-value=34 Score=39.26 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=68.3
Q ss_pred hhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchh---hhccchhhHHHHHHHHH
Q 003256 76 KFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMI---PRTIKKTYSVSLTVFIV 152 (836)
Q Consensus 76 ~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~l~ 152 (836)
..-|.+++|++||- +|.+..+ -|.-| ......+.++|+++||=.+|++---+.. -..+-.....|.+-.++
T Consensus 397 ~aGGpLivaLiLG~--ig~iGpl-~w~mP---~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~v 470 (544)
T COG2985 397 NAGGPLIVALILGF--IGAIGPL-TWFMP---PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLV 470 (544)
T ss_pred ccccHHHHHHHHHH--hcccCce-EEEcC---hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHH
Confidence 44567777777774 4443321 12334 3667789999999877777776544332 23444445556666678
Q ss_pred HHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhc
Q 003256 153 PLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISEL 197 (836)
Q Consensus 153 p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el 197 (836)
|.+.++.++.++.+.-. ..++=+++-+.|++|.+.-. .|.
T Consensus 471 p~i~~~llg~~v~kmn~----~~l~G~laGs~T~ppaLa~a-nd~ 510 (544)
T COG2985 471 PVIIVFLLGRYVLKMNW----LLLCGALAGSMTDPPALAFA-NDA 510 (544)
T ss_pred HHHHHHHHHHHHHhccH----HHHhhHHhcCCCChHHHHHH-hhc
Confidence 88888888877654322 13555666788998877544 444
No 153
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=53.27 E-value=57 Score=35.67 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=30.9
Q ss_pred cEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeec
Q 003256 629 YNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLE 667 (836)
Q Consensus 629 ~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~ 667 (836)
.++++.|-||+|+--.|.+|.+.-...+..+.++++-..
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG 66 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTG 66 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCC
Confidence 478999999999999999998765544567788877654
No 154
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=52.73 E-value=2.8e+02 Score=30.22 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=34.5
Q ss_pred cccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccc
Q 003256 70 RPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIK 140 (836)
Q Consensus 70 ~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~ 140 (836)
+-+|...-.|-.++|+++..|-+.. ...+..+| +.+.-.++|.-.+|+-.|+..+.+..-
T Consensus 244 ~LfgvsfaLGAffaGMvL~eselsh--raa~~slp---------LrdaFaVlFFvsVGmlf~P~~l~~~pl 303 (408)
T COG4651 244 ELFGVSFALGAFFAGMVLAESELSH--RAAEDSLP---------LRDAFAVLFFVSVGMLFDPMILIQQPL 303 (408)
T ss_pred eeeccchhHHHHHHHHHhcchhhhH--HHHHhccC---------HHHHHHHHHHHHhhhhcCcHHhhcchH
Confidence 3456666666666776666543322 11222233 344445666677899999887765543
No 155
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=52.52 E-value=43 Score=32.00 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHhcCCcEEEEecCCC-CCcccccchhhhHHHHHHhccC-CcceEEEEcCCC
Q 003256 556 ETMHESICKLVKDNCITLILLQFIPP-NEETEGRAACLHGLNNNVLGYA-PCTVGIFVDKRL 615 (836)
Q Consensus 556 ~~m~~~I~~~A~~~~adlIi~~~h~~-~g~~~~~~~~~gsv~~~Vl~~A-pCsVgIlvdrg~ 615 (836)
....+.|.+++++++++.||+|.-.+ ||.........+...+++-++. ++||- ++|...
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~-~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVI-LVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEE-EEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEE-EECCCh
Confidence 57889999999999999999998766 6665444556788888888887 99984 787654
No 156
>PRK06801 hypothetical protein; Provisional
Probab=51.29 E-value=54 Score=35.57 Aligned_cols=111 Identities=12% Similarity=0.023 Sum_probs=72.2
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSA 622 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~ 622 (836)
...|-.|-..+ ..+...|++.|++.++.+||.-..+.-.. .+-..+........++++.||++-.|.|........
T Consensus 17 ~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~--~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~ 92 (286)
T PRK06801 17 GYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKY--ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVR 92 (286)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhc--CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Confidence 45666666664 47899999999999999999887755111 122368888999999999999998898853200000
Q ss_pred CCCCcccEEEEEccCCcch-HHHHHHHHHh---hcCCCeEE
Q 003256 623 KPANFCYNVAVFFIGGPDD-REAMALVSHM---SSNPGVRI 659 (836)
Q Consensus 623 ~~~~~~~~I~v~f~Gg~dd-reAL~~A~rm---A~~~~~~L 659 (836)
.-......| -|+|+..+ +|-++.++++ |+..++.+
T Consensus 93 Ai~~GftSV--m~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 93 ALRLGFSSV--MFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHhCCcEE--EEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 000012233 34775544 8888776555 66667643
No 157
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=50.77 E-value=95 Score=35.87 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=43.2
Q ss_pred cEEEEEccCCcchHHHHHHHHHhh-cCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256 629 YNVAVFFIGGPDDREAMALVSHMS-SNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 629 ~~I~v~f~Gg~ddreAL~~A~rmA-~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~ 691 (836)
.+|+|.+-||+|.--.|.+..++. ..++.+++++|+...-.. +.+.++++.+++.+++
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~-----~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP-----NADSWVKHCEQVCQQW 74 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc-----chHHHHHHHHHHHHHc
Confidence 689999999999988888887776 456889999999754321 2233456778887765
No 158
>COG0679 Predicted permeases [General function prediction only]
Probab=50.55 E-value=3.3e+02 Score=29.79 Aligned_cols=106 Identities=11% Similarity=0.124 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003256 298 YTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATT 377 (836)
Q Consensus 298 ~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 377 (836)
+++.-...|....+.....++-.+-+..++..+++|..+...=.+.+.+... .+......++..++.=+...++..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLA---DLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777766677777777889999999999877665666655431 2333333333344444555555566
Q ss_pred hcCCChHHHH--HHHHHhhhhhhHHHHHHhh
Q 003256 378 CFRTSFRNAL--LFSCFVNIKGVSELVTFLR 406 (836)
Q Consensus 378 ~~~~~~real--~lg~~m~~rG~v~l~~~~~ 406 (836)
..+.+.++.. .++...+.-|-+.+-++..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~ 118 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGLPVALS 118 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhHHHHHH
Confidence 6677666553 3344444555555444433
No 159
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=48.16 E-value=93 Score=37.19 Aligned_cols=74 Identities=9% Similarity=0.165 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh---------hcCCChHHHHHHHHHhhhhhh
Q 003256 328 SNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATT---------CFRTSFRNALLFSCFVNIKGV 398 (836)
Q Consensus 328 ~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~---------~~~~~~real~lg~~m~~rG~ 398 (836)
..+++|....-.|..++...+. .++..+..+.+.+++.-.+.+..... ..+++|.+++.+|.++++-.-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~--~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFF--ENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 4567777777789999988876 33333323222222222221111111 125699999999999988877
Q ss_pred HHHHH
Q 003256 399 SELVT 403 (836)
Q Consensus 399 v~l~~ 403 (836)
+...-
T Consensus 147 VAVla 151 (559)
T TIGR00840 147 VAVLA 151 (559)
T ss_pred HHHHH
Confidence 76553
No 160
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=46.69 E-value=8.6 Score=40.80 Aligned_cols=131 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhh
Q 003256 328 SNFFLPFFYIHVGQQIDIYSIN-NWRAFAALELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLR 406 (836)
Q Consensus 328 ~~~flPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~ 406 (836)
++++=++.|.-+|..+|+..+. ++.+.. +..+-=.-+..+++.+...++..+|+..+|.+=+.-|-.++.+.+.
T Consensus 83 ~~i~PllIFmGvGAmTDFgpllanPktll-----LGaAAQ~GIF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~ 157 (375)
T COG1883 83 SGIFPLLIFMGVGAMTDFGPLLANPKTLL-----LGAAAQFGIFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNK 157 (375)
T ss_pred cCcccHHHHhccchhcccchhhcCcHHHH-----hhhHHHhchHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEeccc
Q ss_pred hhhccccchhhHHHHHHHHHHHHHhHHHHHHHhccccchhhhhhhcccccCCCCccceeEEee
Q 003256 407 WRQRELIDVQTYSVLVLTNLAVTAIVTPLISVYYNPQRRLESIAMGTLQTALPDSELRILCGI 469 (836)
Q Consensus 407 ~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~l~~p~~~~~~~~~r~i~~~~~~~elriLvcv 469 (836)
.- -.++..-..+.--.++++ -++-||+.|.+-.+++| |-|--|..+....-||+.|+
T Consensus 158 LA-P~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~ER----kIrM~qlR~Vsk~EkIlFPi 214 (375)
T COG1883 158 LA-PELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEER----KIRMTQLRTVSKREKILFPI 214 (375)
T ss_pred cC-HHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHHH----HhhhhccccccchhhhhhhH
No 161
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=46.67 E-value=1.9e+02 Score=31.37 Aligned_cols=112 Identities=11% Similarity=0.033 Sum_probs=70.4
Q ss_pred CceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCC
Q 003256 542 DAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNS 621 (836)
Q Consensus 542 ~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~ 621 (836)
+...|-.|.... ..+.+.|++.|++.++.+|+.-..+.-.- .....++.......+++++||++-.|.|.......
T Consensus 16 ~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~--~~~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~ 91 (281)
T PRK06806 16 ENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNH--SPLHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIK 91 (281)
T ss_pred CCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhcc--CChHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Confidence 345666666664 47899999999999999999887654110 11225777888899999999999889985320000
Q ss_pred CCCCCcccEEEEEccCCcchHHHHHHHHHh---hcCCCeE
Q 003256 622 AKPANFCYNVAVFFIGGPDDREAMALVSHM---SSNPGVR 658 (836)
Q Consensus 622 ~~~~~~~~~I~v~f~Gg~ddreAL~~A~rm---A~~~~~~ 658 (836)
. .-+.-....+.-.-..+.+|-++.++++ |+..|+.
T Consensus 92 ~-Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 92 E-ALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred H-HHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 0 0000112233333345678888776665 4555554
No 162
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=46.46 E-value=4.7e+02 Score=29.35 Aligned_cols=254 Identities=12% Similarity=0.047 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceeccccccc-ccccc-----cc-ccCC------CchHHHHHHHHH
Q 003256 51 VMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGR-IKMFD-----AY-VTGG------RGMVFAQAASTI 117 (836)
Q Consensus 51 ~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~-~~~~~-----~~-lfp~------~~~~~l~~l~~i 117 (836)
..-++..+++...+++.-.+|---|.+.-.|-.|+++.+.-+.. ..... +. ...+ .....++.+-++
T Consensus 21 ~~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~ 100 (399)
T TIGR03136 21 AITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNF 100 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHH
Confidence 34566666666666666667766788888888888887532210 00000 00 0000 001334433333
Q ss_pred HH------HHHHHHhhhccCcchhhhccchhhHHH-HHHH--HHHHHHHHHHHHHhhccccccchHHHHHHHhhc---cc
Q 003256 118 GG------IYFVFINTVKMDKGMIPRTIKKTYSVS-LTVF--IVPLLISLLVGHREQYKIPRIHDQGISISFVAS---KC 185 (836)
Q Consensus 118 Gl------~~llF~~Gle~d~~~l~~~~~~~~~ia-~~~~--l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls---~T 185 (836)
|+ .++.+-+|--+|+.-+..+.|..+..| ..++ .+++ ..+..++.... ++-.+|++-. +|
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~t~----~~A~~lGF~~~----eAAsIgIIGgADGPT 172 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFATL----VIGYYCGLTPG----EAAAVGTIGGADGPM 172 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHHHH----HHHHHcCCCHH----HhhHHhhcccCCccH
Confidence 33 245556788899999998888877633 3332 2333 23334443322 3334444333 33
Q ss_pred cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 186 AYPVLVDAISELKLLNSELGQLAISSALLHEIVGLLRLLMAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQWIIRR 265 (836)
Q Consensus 186 s~~vv~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r 265 (836)
+.=+.. |+.+.-+|.+++++ -.|...+-.+-+|+++++..+
T Consensus 173 aIf~s~------kLAp~Llg~IaVAA---------------------------------YsYMaLVPiiqPpimklLttk 213 (399)
T TIGR03136 173 VLFASL------ILAKDLFVPISIIA---------------------------------YLYLSLTYAGYPYLIKLLVPK 213 (399)
T ss_pred HHHHHH------hhhhHhHHHHHHHH---------------------------------HHHHHHHhcccchHHHhhcCH
Confidence 322221 22222222221111 112233344445566555432
Q ss_pred c------C-CCCCCc-hHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 003256 266 I------P-ERKPVK-DFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYI 337 (836)
Q Consensus 266 ~------~-~~~~~~-e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~ 337 (836)
. + +.++++ ..-+.+-+....+++.+. =.-.+.+|.+++|-.+.+.+ . +++.+-.+....++.--+.-.
T Consensus 214 kER~I~M~~~~r~VSk~eKilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsG-v-~rLs~taqn~l~nivTifLGl 289 (399)
T TIGR03136 214 KYRGLEVEMEFPDVSQRAKFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQ-I-EPYQNLLEKTLTYGSTLFLGL 289 (399)
T ss_pred HHHcccCccCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 112222 223444444444444432 23468899999999999873 3 555555544333333333345
Q ss_pred HhhccccccccchhhHHH
Q 003256 338 HVGQQIDIYSINNWRAFA 355 (836)
Q Consensus 338 ~~Gl~idl~~l~~~~~~~ 355 (836)
.+|...+-+.+.++++..
T Consensus 290 ~vG~t~~A~~FL~~~tl~ 307 (399)
T TIGR03136 290 VLGVLCEASTLLDPRVSI 307 (399)
T ss_pred HhhhhccHHhhCChHHHH
Confidence 677777766665455543
No 163
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=46.11 E-value=94 Score=34.64 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCcEEEEecCCC--CCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 560 ESICKLVKDNCITLILLQFIPP--NEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 560 ~~I~~~A~~~~adlIi~~~h~~--~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
.+-.+.+++.+.|.|.|----. ||. ...+++++..||||.++
T Consensus 37 ~~a~~~~~~~~PDVi~ld~emp~mdgl---------~~l~~im~~~p~pVimv 80 (350)
T COG2201 37 REAIDKVKKLKPDVITLDVEMPVMDGL---------EALRKIMRLRPLPVIMV 80 (350)
T ss_pred HHHHHHHHhcCCCEEEEecccccccHH---------HHHHHHhcCCCCcEEEE
Confidence 5667889999999999986533 332 56789999999998653
No 164
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=45.32 E-value=3e+02 Score=28.93 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=23.6
Q ss_pred HHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 003256 124 FINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQ 165 (836)
Q Consensus 124 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~ 165 (836)
|..-+--+.+.+|++++..+.--..|.++.++.+..++.+++
T Consensus 78 LAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lg 119 (232)
T PRK04288 78 FAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQ 119 (232)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 333444456666766666655555555555555555555554
No 165
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=44.84 E-value=61 Score=35.32 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=52.1
Q ss_pred HHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHH
Q 003256 78 VSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLIS 157 (836)
Q Consensus 78 v~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg 157 (836)
+-.++.|+++|+. .+++.+.+-|. ..+-+-|+-|..|-.+|+..+.+.+-.-..+++..+++.....
T Consensus 175 llP~iiG~iLGNL----D~~~r~fl~~~---------~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 175 LLPIIIGMILGNL----DPDFRKFLAPG---------VPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHHhcC---------CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 4456888998872 34444333332 2344567889999999999999999888888887777666666
Q ss_pred HHHHHHhh
Q 003256 158 LLVGHREQ 165 (836)
Q Consensus 158 ~~~~~~l~ 165 (836)
+....++.
T Consensus 242 ~~~dr~i~ 249 (314)
T PF03812_consen 242 YLADRLIL 249 (314)
T ss_pred HHHHHHHc
Confidence 66655543
No 166
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=44.81 E-value=2.6e+02 Score=30.69 Aligned_cols=91 Identities=11% Similarity=0.174 Sum_probs=45.6
Q ss_pred HHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003256 299 TIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINN-WRAFAALELIIMAAYIGKVVASILATT 377 (836)
Q Consensus 299 ~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~ 377 (836)
++.+.++|...|..+..+..+. .|.. ......+.|...|++++.+.+.+ ...|..........++.=.+..+...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566678888887644333332 1122 23335566667799999888752 234443333333333333444444444
Q ss_pred hcCCChHHHHHHHHH
Q 003256 378 CFRTSFRNALLFSCF 392 (836)
Q Consensus 378 ~~~~~~real~lg~~ 392 (836)
..+....+.+..|+.
T Consensus 84 l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 84 LFPAFLPPELALGLL 98 (313)
T ss_pred HhhccCCHHHHHHHH
Confidence 432212233555554
No 167
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=44.76 E-value=1e+02 Score=30.10 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhccCCCC---chhhHHHHHHHHHHHHHHHHHHHHhhccccccccch--hhH-HHHHHHHHHHHHHHHHHH
Q 003256 298 YTIGAAMLGIVIPAGPP---LGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINN--WRA-FAALELIIMAAYIGKVVA 371 (836)
Q Consensus 298 ~~lGaf~aGl~i~~~~~---~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~--~~~-~~~~~~ii~~~~~~K~~~ 371 (836)
..-|++++|+++.+..+ ..-.+.+....+..++-+-+|...+|++.-...+.. ... +.......++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 34577788888776533 333344455666788899999999999987654431 112 222222233333444566
Q ss_pred HHHHHhhcCCChHH
Q 003256 372 SILATTCFRTSFRN 385 (836)
Q Consensus 372 ~~l~~~~~~~~~re 385 (836)
.++..+++|+++-.
T Consensus 103 ~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 103 AVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHhCCCHHH
Confidence 66666788988753
No 168
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=44.09 E-value=1.6e+02 Score=31.75 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=42.9
Q ss_pred cEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256 629 YNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 629 ~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~ 691 (836)
++|+|.+-||+|+--+|.+..++.++ .++.++||...-.. ..+.+.+..+++....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~-----~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG-----YSDQEAELVEKLCEKL 77 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC-----ccchHHHHHHHHHHHh
Confidence 69999999999999999999999888 89999999765332 1233445666666654
No 169
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=42.53 E-value=83 Score=34.08 Aligned_cols=70 Identities=6% Similarity=0.020 Sum_probs=53.1
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLN 616 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~ 616 (836)
...|-.|.... ..+...+++.|++.++.+||.-+.+.-.. .+...+........+++++||++-.|.|..
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~--~g~~~~~~~~~~~a~~~~VPValHLDH~~~ 86 (284)
T PRK12737 17 GYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSY--AGTDYIVAIAEVAARKYNIPLALHLDHHED 86 (284)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhh--CCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 45666666664 47899999999999999999877644110 112257788899999999999998898853
No 170
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=42.47 E-value=93 Score=29.86 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=26.8
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEee
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYL 666 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~ 666 (836)
+|++.|-||+|+--.+.++.+...+. -++.++++-.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dt 36 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDT 36 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCC
Confidence 47899999999988888887766542 3566776644
No 171
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=42.43 E-value=77 Score=34.53 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=29.3
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeec
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLE 667 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~ 667 (836)
+.++.|-||+|+--.|.++.+.-...+..+.++++-..
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG 58 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTG 58 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecC
Confidence 45678999999999999998876544567788888553
No 172
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.02 E-value=86 Score=33.98 Aligned_cols=69 Identities=9% Similarity=0.071 Sum_probs=52.4
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRL 615 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~ 615 (836)
...|-.+...+ ..+...+++.|++.++.+|+.-..+.-.. .+...+........+++++||++-.|.|.
T Consensus 17 ~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~--~g~~~~~~~~~~~A~~~~VPValHLDH~~ 85 (284)
T PRK12857 17 GYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKY--AGIEYISAMVRTAAEKASVPVALHLDHGT 85 (284)
T ss_pred CCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhh--CCHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 45566666664 48899999999999999999887654110 12235778888899999999999889885
No 173
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=41.99 E-value=2.7e+02 Score=26.83 Aligned_cols=19 Identities=5% Similarity=0.228 Sum_probs=10.8
Q ss_pred HHHHHHH--Hhhccccccccc
Q 003256 331 FLPFFYI--HVGQQIDIYSIN 349 (836)
Q Consensus 331 flPlFF~--~~Gl~idl~~l~ 349 (836)
-+|+||+ .+|.-..++.+.
T Consensus 68 ~m~LfFVPagVGim~~~~ll~ 88 (141)
T PRK04125 68 NIGFLFVPSGISVINSLGVMS 88 (141)
T ss_pred HHHHHHhhhHhHHHHhHHHHH
Confidence 3577776 455544555554
No 174
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=41.65 E-value=65 Score=30.88 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCC-CCcccccchhhhHHHHHHhccCCcceEEEEcCCC
Q 003256 558 MHESICKLVKDNCITLILLQFIPP-NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRL 615 (836)
Q Consensus 558 m~~~I~~~A~~~~adlIi~~~h~~-~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~ 615 (836)
..+.|.+++++++++.||+|.-.+ +|.........+...+++-++-++|| +++|..+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPV-VLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 468899999999999999998776 66654444567788888877778998 5787654
No 175
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=41.14 E-value=2.4e+02 Score=31.57 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhhccCCCCch-----hhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 003256 297 NYTIGAAMLGIVIPAGPPLG-----SALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVA 371 (836)
Q Consensus 297 ~~~lGaf~aGl~i~~~~~~~-----~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~ 371 (836)
++.+=+.++|+++.-.++.. .-+.+-++.+ .....|+-.+.+|..+..........+......+++.++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 44444445555554443222 3344444444 67789999888998876543221112222233345555556666
Q ss_pred HHHHHhhcCCChH
Q 003256 372 SILATTCFRTSFR 384 (836)
Q Consensus 372 ~~l~~~~~~~~~r 384 (836)
++...+..+++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 6666666665543
No 176
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=40.65 E-value=1.8e+02 Score=28.04 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCC
Q 003256 50 VVMLQVSLAFSISQILYILLRPLKQP 75 (836)
Q Consensus 50 ~~llqi~lil~~s~l~~~ll~rl~~P 75 (836)
.++.|+++++.+..+...+.+-+++|
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll~lP 33 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFLPIP 33 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 46789988888887777777767755
No 177
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=40.57 E-value=1.9e+02 Score=26.82 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=51.8
Q ss_pred CCCCCCceEEEEEEeeccCCCccchhcccccc--cccccC-chHHHHHHHHHHhhcCCCceeEEEEEEEcCCcchHHHHH
Q 003256 487 PTEMNPICAYVVHLVELVGRAAPVVETYSTQK--TKAMAN-STDHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESIC 563 (836)
Q Consensus 487 ~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~--~~~~~~-~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~ 563 (836)
+.+.-.-.|.-+|++|.++ ..+.+..++.-- ...-.. ..+...+.++...+....++-+...-.. ..+.+++.
T Consensus 17 G~~gL~r~V~~v~v~e~~d-~~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~---~~iP~~~i 92 (123)
T PF07905_consen 17 GENGLDRPVRWVHVMEAPD-PSDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYL---DEIPEEII 92 (123)
T ss_pred CCccCCCcEEEEEEeecCC-HHHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCcc---ccCCHHHH
Confidence 3333345778889998874 223433333210 000111 1223555566665543344555443222 47889999
Q ss_pred HHHHhcCCcEEEEecC
Q 003256 564 KLVKDNCITLILLQFI 579 (836)
Q Consensus 564 ~~A~~~~adlIi~~~h 579 (836)
++|++.+--+|.+||+
T Consensus 93 ~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 93 ELADELGLPLIEIPWE 108 (123)
T ss_pred HHHHHcCCCEEEeCCC
Confidence 9999999999999996
No 178
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=40.09 E-value=7.7e+02 Score=30.02 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 240 IELSLCAMSLFTFLVLWPTIQWIIRR 265 (836)
Q Consensus 240 ~~~~~v~~~~~~~~v~r~~~~~i~~r 265 (836)
.+++.++.+.++++++.|...|+...
T Consensus 418 Pllt~li~~~l~~~viGp~~~~i~~~ 443 (631)
T PRK09765 418 PVLGTLGAGSLMLFVVGEPVAWINNS 443 (631)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566667777777776543
No 179
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=39.46 E-value=1.5e+02 Score=31.08 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=48.7
Q ss_pred EEEEEEEcCCc-chHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 546 IQPFIMISQYE-TMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 546 v~~~t~vs~~~-~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
..++|-+.|.+ ...++|.+.+.+-+.|.|++|-. +|. +......+.+++-++...||-++
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS--~gv---t~~~~~~~v~~ik~~~~lPvilf 76 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGS--DGV---TEENVDNVVEAIKERTDLPVILF 76 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEECCc--ccc---cHHHHHHHHHHHHhhcCCCEEEe
Confidence 46789999999 89999999999999999999954 443 32357788888888999997543
No 180
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=39.42 E-value=5.6e+02 Score=28.28 Aligned_cols=80 Identities=11% Similarity=0.007 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcccCCChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHH------HHHHHHhhhccC
Q 003256 58 AFSISQILYILLRPLKQPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGG------IYFVFINTVKMD 131 (836)
Q Consensus 58 il~~s~l~~~ll~rl~~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl------~~llF~~Gle~d 131 (836)
+++...+++.-.+|---|.+.-.|-.|+++.+.=.+.. ..+.+ ...++.+-++|+ .++.+-+|--+|
T Consensus 6 i~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~----g~~~~---gg~l~~~~~~gi~~~l~P~LIFlGIGAmtD 78 (354)
T TIGR01109 6 LLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGL----GLTAE---GGILALFYKVGIGSGIAPLLIFMGIGALTD 78 (354)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcccc----ccccC---CchHHHHHHHHHhcchHHHHHHHhccHHhh
Confidence 34444455555566667888888888888875311100 00111 123332333332 345566888999
Q ss_pred cchhhhccchhhH
Q 003256 132 KGMIPRTIKKTYS 144 (836)
Q Consensus 132 ~~~l~~~~~~~~~ 144 (836)
+.-+..+.+..+.
T Consensus 79 FgpllanP~~~ll 91 (354)
T TIGR01109 79 FGPLLANPRTLLL 91 (354)
T ss_pred hHHHHhChHHHHH
Confidence 9999888874443
No 181
>COG4827 Predicted transporter [General function prediction only]
Probab=38.47 E-value=2.2e+02 Score=29.11 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhccCcchhhh--ccchhhHHHHHHHHHHHHHHHH
Q 003256 115 STIGGIYFVFINTVKMDKGMIPR--TIKKTYSVSLTVFIVPLLISLL 159 (836)
Q Consensus 115 ~~iGl~~llF~~Gle~d~~~l~~--~~~~~~~ia~~~~l~p~~lg~~ 159 (836)
-..|..+.+|..|+++-+..=.. +.|++..|+....++...++.+
T Consensus 11 ~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~gl 57 (239)
T COG4827 11 YVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFGGL 57 (239)
T ss_pred HHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888899888887764322 3455666665544444444433
No 182
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=38.27 E-value=2e+02 Score=29.89 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=19.0
Q ss_pred CcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 003256 131 DKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQ 165 (836)
Q Consensus 131 d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~ 165 (836)
+.+.+|++++..+.--..+.++.++.+..++++++
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lg 103 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLG 103 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 44556666665555545555555555555555544
No 183
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=37.70 E-value=1.2e+02 Score=32.87 Aligned_cols=75 Identities=20% Similarity=0.172 Sum_probs=52.4
Q ss_pred HHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHH
Q 003256 78 VSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLIS 157 (836)
Q Consensus 78 v~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg 157 (836)
+-.++.|+++|+ + .+++.+.+-|. ..+-..|+-|..|-.+|++.+.+.+-.-+.+|+...+++....
T Consensus 175 ilPlliG~ilGN--L--D~~~r~fl~~~---------~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~ 241 (314)
T TIGR00793 175 VLPFLVGFALGN--L--DPELRDFFSKA---------VQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPL 241 (314)
T ss_pred HHHHHHHHHHhc--C--CHHHHHHhccC---------CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 445688899887 2 34443333332 2234567889999999999999988888888887777777766
Q ss_pred HHHHHHhh
Q 003256 158 LLVGHREQ 165 (836)
Q Consensus 158 ~~~~~~l~ 165 (836)
+....++.
T Consensus 242 ~~~dr~~~ 249 (314)
T TIGR00793 242 ILADKFIG 249 (314)
T ss_pred HHHHHHhc
Confidence 66666554
No 184
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=37.62 E-value=6.8e+02 Score=28.69 Aligned_cols=93 Identities=17% Similarity=0.256 Sum_probs=49.5
Q ss_pred hchhHHHHHHHHHhhccCCCCchhhHHHHHHHHHHH-----HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Q 003256 294 MRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAILSN-----FFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGK 368 (836)
Q Consensus 294 ~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~-----~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K 368 (836)
+|...++.-|.....+-.+ -+.+...+.++.+..+ |++...-+-+=+..|-..+. +...-.+..++...++-
T Consensus 58 iGGg~il~~f~ps~Lv~~~-~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLi--ka~~r~~p~il~g~~~a 134 (414)
T PF03390_consen 58 IGGGAILCIFVPSALVYFG-LIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLI--KAFARFIPPILGGVIGA 134 (414)
T ss_pred CChHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHH--HHHHHHHHHHHHHHHHH
Confidence 4444444444444444333 3444556666555332 23322222222233333333 23333444455666777
Q ss_pred HHHHHHHHhhcCCChHHHHHH
Q 003256 369 VVASILATTCFRTSFRNALLF 389 (836)
Q Consensus 369 ~~~~~l~~~~~~~~~real~l 389 (836)
++.+.+...++|.+++|++..
T Consensus 135 ~~~g~lvG~l~G~~~~~~i~~ 155 (414)
T PF03390_consen 135 FLLGGLVGMLFGYSFKDAIFY 155 (414)
T ss_pred HHHHHHHHHHhCCCHHHHHHH
Confidence 778888889999999999874
No 185
>PRK08185 hypothetical protein; Provisional
Probab=37.28 E-value=1.2e+02 Score=32.74 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=70.9
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCC-CCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNN-CSNS 621 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~-~~~~ 621 (836)
...|-.|...+ ..+...+++.|++.++.+|+.-..+. .......+........++++.||++-.|.|... ....
T Consensus 12 ~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~---~~~~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ 86 (283)
T PRK08185 12 QFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNE---LDFLGDNFFAYVRERAKRSPVPFVIHLDHGATIEDVMR 86 (283)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcch---hhhccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Confidence 45566666664 47899999999999999999988755 111112377888899999999999988988531 0000
Q ss_pred CCCCCcccEEEEEccCCc-chHHHHHHHHHhh---cCCCeEE
Q 003256 622 AKPANFCYNVAVFFIGGP-DDREAMALVSHMS---SNPGVRI 659 (836)
Q Consensus 622 ~~~~~~~~~I~v~f~Gg~-ddreAL~~A~rmA---~~~~~~L 659 (836)
... ..+.. |-++|+. +.+|=++.++++. ...|+.+
T Consensus 87 ai~-~Gf~S--VM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 87 AIR-CGFTS--VMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHH-cCCCE--EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 000 01122 4677765 4566666666655 5556655
No 186
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=37.14 E-value=1.9e+02 Score=28.63 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=44.6
Q ss_pred CcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEE---cCChHHHHHHH
Q 003256 638 GPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRID---ANDSNQLVNAF 714 (836)
Q Consensus 638 g~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~---v~~g~~~~~~i 714 (836)
.+.|.|++..|++|++ .+.+++++-+-++. ++..+++... + +.+++...+-. --+.+...+++
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~~G~~~-----------~~~~~~~~~~-~-Gad~v~~~~~~~~~~~~~~~~a~~l 83 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALVIGPPA-----------AEVALREALA-M-GADKVLLVEDPALAGYDPEATAKAL 83 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEEECChH-----------HHHHHHHHHH-h-CCCEEEEEecCcccCCChHHHHHHH
Confidence 6788999999999988 56677777654321 0111122211 1 22333322210 11233344555
Q ss_pred Hhc--ccCCcEEEEcccCCC
Q 003256 715 RSL--VSDNDLVIVGRQQPF 732 (836)
Q Consensus 715 ~~~--~~~~DLiivG~~~~~ 732 (836)
.+. ..++|+|++|.+...
T Consensus 84 ~~~i~~~~p~~Vl~g~t~~g 103 (181)
T cd01985 84 AALIKKEKPDLILAGATSIG 103 (181)
T ss_pred HHHHHHhCCCEEEECCcccc
Confidence 544 246999999998763
No 187
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=36.48 E-value=3.4e+02 Score=33.91 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhcccc
Q 003256 115 STIGGIYFVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCA 186 (836)
Q Consensus 115 ~~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts 186 (836)
..+-+-++....|++.|...+.+ +.............-++.+.+.+.+....+. .++.+|.+++.=.
T Consensus 312 ~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~----~~l~l~~lm~~kg 378 (769)
T KOG1650|consen 312 SGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLR----DSLALGLLMSTKG 378 (769)
T ss_pred HHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchh----HHHHHHHHHHhhh
Confidence 34556677788999999999988 2222222222233334444444443332222 4677777776533
No 188
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=36.46 E-value=7.1e+02 Score=28.97 Aligned_cols=74 Identities=9% Similarity=0.052 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccC--CChhHHHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHH
Q 003256 50 VVMLQVSLAFSISQILYILLRPLK--QPKFVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVF 124 (836)
Q Consensus 50 ~~llqi~lil~~s~l~~~ll~rl~--~P~iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF 124 (836)
+-++...+-+.++...-+++.+.| .+..++-.+.++--.--.... ..+.+..|+-.-...-+.++..+-.|+|+
T Consensus 84 lsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~ 159 (480)
T KOG2563|consen 84 LSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISS-LPFVPPLFRRPLTHTGQSIAAAAQPFILG 159 (480)
T ss_pred HHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcc-CccccccchhhhhHHhHHHHHHhhhHhhc
Confidence 334455566667777888888855 566666655554322111111 11222233311234455556666554444
No 189
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=35.39 E-value=90 Score=30.07 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCCcEEEEecCCC-CCcccccchhhhHHHHHHhccCCcceEEEEcCCC
Q 003256 558 MHESICKLVKDNCITLILLQFIPP-NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRL 615 (836)
Q Consensus 558 m~~~I~~~A~~~~adlIi~~~h~~-~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~ 615 (836)
-.+.|.++.++.+++.||+|.-.+ +|....+....+...+++-++-++|| +++|...
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv-~l~DERl 98 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPV-VLWDERL 98 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCE-EEEcCcc
Confidence 457899999999999999999876 66654444467888999999999999 5787653
No 190
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=35.37 E-value=4.2e+02 Score=26.32 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHhhccCCCCchh-hHHHHHHHHHHHHHHHHHHHHhhccccccccch--hhHHHHHHHHHHHHHHHHHHH
Q 003256 295 RVNYTIGAAMLGIVIPAGPPLGS-ALVEKSEAILSNFFLPFFYIHVGQQIDIYSINN--WRAFAALELIIMAAYIGKVVA 371 (836)
Q Consensus 295 G~~~~lGaf~aGl~i~~~~~~~~-~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~--~~~~~~~~~ii~~~~~~K~~~ 371 (836)
.+...-|+++.|+++.+..+.+. .+......+..++.+-+|...+|++.-...+.. ...+..... -++.++.-.+.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~-~~~i~~~~~~~ 100 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLL-GVIITLVPLLI 100 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHH
Confidence 34445567777777765521110 034445556678889999999999987654431 223332222 22333344455
Q ss_pred HHHHHh-hcCCChHHH
Q 003256 372 SILATT-CFRTSFRNA 386 (836)
Q Consensus 372 ~~l~~~-~~~~~~rea 386 (836)
++..++ ++|+++-..
T Consensus 101 ~~~~~~~~~~l~~~~~ 116 (169)
T PF06826_consen 101 ALVIGRYLFKLNPGIA 116 (169)
T ss_pred HHHHHHHHcCCCHHHH
Confidence 555555 888886543
No 191
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=35.31 E-value=4.9e+02 Score=26.33 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHHHHHhc-ccc-CChhHHH-------HHHHHHHHH
Q 003256 146 SLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVDAISEL-KLL-NSELGQL-------AISSALLHE 216 (836)
Q Consensus 146 a~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~iL~el-~l~-~s~~g~l-------~ls~a~v~D 216 (836)
++.+.+.-.++..++..+++.......-.++...+-.++-+.-++..=.+|. +.. +.+..+. .++..+...
T Consensus 60 aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~ 139 (189)
T PF02355_consen 60 AIIALIHDVLITLGIFSLFGIELTLPSIAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIKQTLSRTIDTS 139 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3434444444555555555544442111235555556666666665555554 321 2222221 122222233
Q ss_pred HHHHHHHHHHHhhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 217 IVGLLRLLMAPLSKAKYR--SVAIRIELSLCAMSLFTFLVLWPTIQWIIRR 265 (836)
Q Consensus 217 i~~~~ll~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~v~r~~~~~i~~r 265 (836)
+..++......+. +++. ......+++.+.-....+++.+|+..|+.++
T Consensus 140 ~ttll~~~~L~~~-g~~~l~~Fa~~l~iGvi~~~~ss~~ia~~l~~~l~~~ 189 (189)
T PF02355_consen 140 LTTLLAALILFFF-GGGSLKGFALTLIIGVIIGTYSSLFIARPLLYWLVKK 189 (189)
T ss_dssp HHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3322222212122 1222 2233333444444445567788888877653
No 192
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=35.20 E-value=5.1e+02 Score=29.31 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHH-HHHhh--hhhh
Q 003256 323 SEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATTCFRTS-FRNALLF-SCFVN--IKGV 398 (836)
Q Consensus 323 l~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~-~real~l-g~~m~--~rG~ 398 (836)
+.+.++..++|+-....=++.|+..+. .... ..+...+++.++-++++.++...++.. -.|...+ |.+.. .-|.
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~-~~g~-~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs 129 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRIL-RLGG-RLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGS 129 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHH-HhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCch
Confidence 445567777777666666889988775 1222 233444455566666666665555543 2233333 22221 3455
Q ss_pred HHHHHHhhhhhccccchhhHHHHHHH
Q 003256 399 SELVTFLRWRQRELIDVQTYSVLVLT 424 (836)
Q Consensus 399 v~l~~~~~~~~~~ii~~~~~~~~vl~ 424 (836)
+-.+....+++ .+++.|+.++.+
T Consensus 130 ~N~~Av~~al~---~~~~~~~a~~aa 152 (378)
T PF05684_consen 130 VNFVAVAEALG---VSDSLFAAALAA 152 (378)
T ss_pred hHHHHHHHHHC---CCHHHHHHHHHH
Confidence 55555544443 345555554433
No 193
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=35.10 E-value=1.3e+02 Score=32.57 Aligned_cols=70 Identities=7% Similarity=0.052 Sum_probs=53.2
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLN 616 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~ 616 (836)
...|-.|.... ..+.+.|++.|++.++.+|+.-..+.-.-. +...+........+++.+||++--|.|..
T Consensus 15 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~--~~~~~~~~~~~~a~~~~VPValHLDHg~~ 84 (282)
T TIGR01858 15 GYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHA--GTEYIVALCSAASTTYNMPLALHLDHHES 84 (282)
T ss_pred CCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhC--CHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 45566666664 488999999999999999998877541111 22357788999999999999998898853
No 194
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=35.06 E-value=4.9e+02 Score=26.29 Aligned_cols=128 Identities=10% Similarity=0.141 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHhhccCCCCchhhHHHHHHHH
Q 003256 249 LFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACD--SMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAI 326 (836)
Q Consensus 249 ~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~~~~iae--~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~ 326 (836)
.+..++..+..-.+..|.++. .......+...+......+ ..-...+++++++=++...+ ..++.....+...
T Consensus 40 ~i~al~~g~vyml~~~KV~K~----G~~~i~~~i~gl~~~~~G~~~~~~~~~ii~gliaeli~~~g-~Yks~~~~~ia~~ 114 (189)
T TIGR02185 40 GITAFLVGIIFFLMVAKVPKR----GVIFIFGILLGLLFFLMGMYWPMIISSIIGGLLADIIASTG-GYKNKRKVTIAYV 114 (189)
T ss_pred HHHHHHHhHHHhhhhhhcCCc----cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHH
Confidence 334445555555666776642 1222222222222111111 12344556667777776654 4443332222211
Q ss_pred ------HHHHHHHHHHHHhhccc-------c---ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 003256 327 ------LSNFFLPFFYIHVGQQI-------D---IYSINNWRAFAALELIIMAAYIGKVVASILATTCFRT 381 (836)
Q Consensus 327 ------~~~~flPlFF~~~Gl~i-------d---l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~ 381 (836)
..+-++|+||..-...- + .+.+.+..+.+...+.++..+++=++|+++..+..|.
T Consensus 115 ~~~~~~~~g~~~p~~~~~d~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~t~v~~~iG~~iG~kllkK 185 (189)
T TIGR02185 115 LFFLLVAMGPILPIWLFKDEYIAFFAARGDSAEYIDQYIKYVSAIWAVIMIVLTAVAGIAGVLIGKKLLKK 185 (189)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12335677774322211 1 1111111122223444455666678888887776643
No 195
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=35.04 E-value=6.3e+02 Score=27.55 Aligned_cols=134 Identities=10% Similarity=0.100 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhhccCCC-CchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 297 NYTIGAAMLGIVIPAGP-PLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILA 375 (836)
Q Consensus 297 ~~~lGaf~aGl~i~~~~-~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 375 (836)
++.+=|.++|+++.-.+ +....+.+-++.+ .+...|+-...+|+.++...+. ..+........+..+.-.+.++..
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~--~~~~~~~~~~~~klil~P~i~~~~ 258 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKIK--LGVRDAILALIVRFLVQPAVMAGI 258 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhc--cChHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666676666431 2334455555554 6788999999999998876654 223333344444555555555666
Q ss_pred HhhcCCChHH--HHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHHHH
Q 003256 376 TTCFRTSFRN--ALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLISV 438 (836)
Q Consensus 376 ~~~~~~~~re--al~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv~~ 438 (836)
....+.+... ...+-..| |-+....+ .+.+.+.-.+..-+.+.++.++ ++++-|+.-+
T Consensus 259 ~~~~~l~~~~~~~~vl~aa~-P~a~~~~i---~A~~y~~~~~~aa~~v~~sT~l-s~~tlp~~~~ 318 (321)
T TIGR00946 259 SKLIGLRGLELSVAILQAAL-PGGAVAAV---LATEYEVDVELASTAVTLSTVL-SLISLPLFII 318 (321)
T ss_pred HHHhCCChHHHHHHHHHHcC-ChhhHHHH---HHHHhCCCHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6666665433 22222222 44443333 3344453333444444555555 5555555444
No 196
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=34.33 E-value=5.1e+02 Score=28.59 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHH-HHhHHHH
Q 003256 357 LELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAV-TAIVTPL 435 (836)
Q Consensus 357 ~~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~-t~i~~pl 435 (836)
+...++++++.-+.+-.+..++.|++.-|+..++---+.-+.+.++.+...++..-+..+-|...+++.+=+ .++++-+
T Consensus 57 ~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~ 136 (327)
T PF05982_consen 57 LLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALL 136 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHH
Confidence 444455555555666666666689999999999887666666677777666777667777776554443322 3334444
Q ss_pred HHHhc
Q 003256 436 ISVYY 440 (836)
Q Consensus 436 v~~l~ 440 (836)
+.+++
T Consensus 137 L~~~~ 141 (327)
T PF05982_consen 137 LARLF 141 (327)
T ss_pred HHHHH
Confidence 44333
No 197
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=33.87 E-value=4.6e+02 Score=31.55 Aligned_cols=57 Identities=9% Similarity=-0.059 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hccccccchHHHHHHHhhccccHHHHH-HHHHhcc
Q 003256 142 TYSVSLTVFIVPLLISLLVGHRE-QYKIPRIHDQGISISFVASKCAYPVLV-DAISELK 198 (836)
Q Consensus 142 ~~~ia~~~~l~p~~lg~~~~~~l-~~~~~~~~~~sl~lg~~ls~Ts~~vv~-~iL~el~ 198 (836)
...++.+++.+.+++.+++..++ +.....+...++.+++-+++=+..++. ++-+|++
T Consensus 464 ~glva~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtIGmaVDanIVI~ERIrEel~ 522 (604)
T PRK12933 464 LGWVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLK 522 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhccCcEEEehHHHHHHH
Confidence 33445555566666666555555 444331111236666666665555554 3434444
No 198
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=33.61 E-value=4.4e+02 Score=27.53 Aligned_cols=40 Identities=8% Similarity=-0.060 Sum_probs=21.8
Q ss_pred hhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 003256 126 NTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQ 165 (836)
Q Consensus 126 ~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~ 165 (836)
.-+--+.+.+|++++....--..+.++.+..+..++.+++
T Consensus 74 vPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg 113 (226)
T TIGR00659 74 IPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLG 113 (226)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3333455666666666555445555555555555555554
No 199
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=33.38 E-value=5.2e+02 Score=26.04 Aligned_cols=127 Identities=12% Similarity=0.261 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHhhccCCCCchhhHHHHHHHH
Q 003256 249 LFTFLVLWPTIQWIIRRIPERKPVKDFYIVAILTGALVMAVACD--SMRVNYTIGAAMLGIVIPAGPPLGSALVEKSEAI 326 (836)
Q Consensus 249 ~~~~~v~r~~~~~i~~r~~~~~~~~e~~~~~il~~~l~~~~iae--~~G~~~~lGaf~aGl~i~~~~~~~~~l~~kl~~~ 326 (836)
.+...+..++...+..|.|+. .......+...++.....+ ..-...+++++++=++...+ ..++.....+...
T Consensus 38 ~i~ali~g~vyml~~~KV~K~----G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g-~y~~~~~~~iay~ 112 (186)
T PF09605_consen 38 AIAALICGIVYMLMVAKVPKR----GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKG-GYKSKKRNTIAYA 112 (186)
T ss_pred HHHHHHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHH
Confidence 344555666777777887652 2333333322222222222 23345677777777777655 4444333333221
Q ss_pred -----HHHHHHHHHHHHhhcccc-------c---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 003256 327 -----LSNFFLPFFYIHVGQQID-------I---YSINNWRAFAALELIIMAAYIGKVVASILATTCFR 380 (836)
Q Consensus 327 -----~~~~flPlFF~~~Gl~id-------l---~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 380 (836)
..+-++|++|..=...-+ - +.+.+..+.+...++++..+++=++|++++.+..+
T Consensus 113 vf~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 113 VFSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 125677777754333211 0 11111112233445555667777888888776654
No 200
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=33.14 E-value=1.7e+02 Score=31.86 Aligned_cols=69 Identities=9% Similarity=0.033 Sum_probs=52.2
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCccc-ccchhhhHHHHHHhccCCcceEEEEcCCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETE-GRAACLHGLNNNVLGYAPCTVGIFVDKRLN 616 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~-~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~ 616 (836)
...|-.|...+ ..+...+++.|++.++.+|+.-..+. .. .....+........++++.||++-.|.|..
T Consensus 17 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~---~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~ 86 (286)
T PRK12738 17 GYAVPAFNIHN--AETIQAILEVCSEMRSPVILAGTPGT---FKHIALEEIYALCSAYSTTYNMPLALHLDHHES 86 (286)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcCcch---hhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 45555666554 57899999999999999999876544 11 122356788899999999999998898853
No 201
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=33.07 E-value=1.5e+02 Score=32.06 Aligned_cols=70 Identities=11% Similarity=0.067 Sum_probs=53.0
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLN 616 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~ 616 (836)
...|-.+...+ ..+...+++.|++.++.+|+.-+.+.-... +-..+........+++++||++-.|.|..
T Consensus 12 ~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~~--~~~~~~~~~~~~a~~~~VPV~lHLDH~~~ 81 (276)
T cd00947 12 GYAVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKYA--GLELLVAMVKAAAERASVPVALHLDHGSS 81 (276)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhC--CHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 45566666665 479999999999999999998776541111 12357788889999999999999999853
No 202
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=32.62 E-value=1.9e+02 Score=32.28 Aligned_cols=72 Identities=10% Similarity=-0.039 Sum_probs=52.5
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCC----CCc-ccc---------cchhhhHHHHHHhccCCcceE
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPP----NEE-TEG---------RAACLHGLNNNVLGYAPCTVG 608 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~----~g~-~~~---------~~~~~gsv~~~Vl~~ApCsVg 608 (836)
...|-.|-..+ ..+...+++.|++.++.+||.-+.+. .|. .+. +...+........+++++||+
T Consensus 26 ~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPVa 103 (357)
T TIGR01520 26 NFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVV 103 (357)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 45556666554 47899999999999999999887754 110 110 011267788899999999999
Q ss_pred EEEcCCCC
Q 003256 609 IFVDKRLN 616 (836)
Q Consensus 609 Ilvdrg~~ 616 (836)
+-.|.|..
T Consensus 104 lHLDHg~~ 111 (357)
T TIGR01520 104 LHTDHCAK 111 (357)
T ss_pred EECCCCCC
Confidence 98899854
No 203
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=31.45 E-value=3e+02 Score=30.60 Aligned_cols=124 Identities=12% Similarity=0.099 Sum_probs=69.3
Q ss_pred CCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEE
Q 003256 582 NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITL 661 (836)
Q Consensus 582 ~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltv 661 (836)
+|..+.+-.....+.+.|-+..+-||++ .-+... ...||.+.+|++.++.++.+. + +..
T Consensus 185 GGslenR~Rf~~eii~~ir~~~~~~v~v-Ris~~d-----------------~~~~G~~~~e~~~i~~~l~~~-g--vD~ 243 (337)
T PRK13523 185 GGSPENRYRFLREIIDAVKEVWDGPLFV-RISASD-----------------YHPGGLTVQDYVQYAKWMKEQ-G--VDL 243 (337)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCeEE-Eecccc-----------------cCCCCCCHHHHHHHHHHHHHc-C--CCE
Confidence 4555555567788888888877777765 212111 123688899999999999765 3 455
Q ss_pred EEEeecCCcccc-hhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCC
Q 003256 662 SRIYLEENLVEE-EDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQP 731 (836)
Q Consensus 662 vrv~~~~~~~~~-~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~ 731 (836)
+++-........ ........++.+++++.. +..|...- .+.+.++..+.|++ ..+|+|.+||.--
T Consensus 244 i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G-~i~~~~~a~~~l~~--g~~D~V~~gR~~i 309 (337)
T PRK13523 244 IDVSSGAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVG-LITSGAQAEEILQN--NRADLIFIGRELL 309 (337)
T ss_pred EEeCCCCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeC-CCCCHHHHHHHHHc--CCCChHHhhHHHH
Confidence 555332110000 000111234556666543 22333221 23445555566654 5589999999754
No 204
>PRK09903 putative transporter YfdV; Provisional
Probab=31.23 E-value=6.2e+02 Score=27.57 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003256 298 YTIGAAMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASILATT 377 (836)
Q Consensus 298 ~~lGaf~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 377 (836)
+++.-...|....+...+.++-.+.+..++..+.+|......-.+.+.+... ..+.. .....+.++.-++.+++.++
T Consensus 11 pif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~ 87 (314)
T PRK09903 11 PIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIF--ADTRL-TLVSLVVIVGCFFFSWFGCY 87 (314)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--hhhhH-HHHHHHHHHHHHHHHHHHHH
Confidence 4445556777787776788888888999999999999877666666644332 12221 12222223333344444443
Q ss_pred -hcCCChHHH
Q 003256 378 -CFRTSFRNA 386 (836)
Q Consensus 378 -~~~~~~rea 386 (836)
+.+.+.++.
T Consensus 88 ~~~~~~~~~~ 97 (314)
T PRK09903 88 KFFKRTHAEA 97 (314)
T ss_pred HHhcCCcchh
Confidence 445555554
No 205
>COG2035 Predicted membrane protein [Function unknown]
Probab=31.10 E-value=7e+02 Score=26.86 Aligned_cols=49 Identities=29% Similarity=0.397 Sum_probs=35.2
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHhhhceec--cccccc
Q 003256 44 VSSVLPVVMLQVSLAFSISQILYILLRPLKQPKFVSNTLSGIILG--PSFLGR 94 (836)
Q Consensus 44 l~~~l~~~llqi~lil~~s~l~~~ll~rl~~P~iv~~IlaGillG--Ps~Lg~ 94 (836)
+.+-.|+..--+..++.+++++.++++. -|.++-...+|+++| |+.++.
T Consensus 55 ~~fLi~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~ 105 (276)
T COG2035 55 VLFLIPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKE 105 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666777788889999998887 566666678999998 555554
No 206
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=30.62 E-value=3e+02 Score=30.63 Aligned_cols=128 Identities=11% Similarity=0.005 Sum_probs=68.5
Q ss_pred CCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEE
Q 003256 582 NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITL 661 (836)
Q Consensus 582 ~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltv 661 (836)
+|.++.+-.....+.+.|-+..+.++-|-+.-+..+ ...||.+-+|++.+++++.+...+. .
T Consensus 184 GGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~----------------~~~~G~~~~e~~~~~~~l~~~G~vd--~ 245 (343)
T cd04734 184 GGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDE----------------DTEGGLSPDEALEIAARLAAEGLID--Y 245 (343)
T ss_pred CCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhh----------------ccCCCCCHHHHHHHHHHHHhcCCCC--E
Confidence 355555556777888888888766543322212110 1347888899999999998764333 2
Q ss_pred EEEeecCCcc---------cchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCC
Q 003256 662 SRIYLEENLV---------EEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPF 732 (836)
Q Consensus 662 vrv~~~~~~~---------~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~ 732 (836)
+++-...... ....+.....++.+.+++.. +..|...= .+.+.++..+++++ ..+|+|.+||.--.
T Consensus 246 i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G-~i~~~~~~~~~l~~--~~~D~V~~gR~~la 320 (343)
T cd04734 246 VNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAG-RIRDPAEAEQALAA--GHADMVGMTRAHIA 320 (343)
T ss_pred EEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeC-CCCCHHHHHHHHHc--CCCCeeeecHHhHh
Confidence 3331110000 00011111234556666543 23444321 13345566666653 56999999997543
No 207
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=30.53 E-value=90 Score=34.26 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=18.8
Q ss_pred hHHHHHHHHhcc-----cCCcEEEEcccCCC
Q 003256 707 SNQLVNAFRSLV-----SDNDLVIVGRQQPF 732 (836)
Q Consensus 707 g~~~~~~i~~~~-----~~~DLiivG~~~~~ 732 (836)
..++.++|+.+. .+||+||++|+|+.
T Consensus 57 ~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 57 AASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 455666666653 25999999999984
No 208
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=30.34 E-value=1.4e+02 Score=32.69 Aligned_cols=38 Identities=11% Similarity=0.070 Sum_probs=29.8
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeec
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLE 667 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~ 667 (836)
++++.|-||+|+--.|.+|.+.....+..+.++++-..
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG 76 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTT 76 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCC
Confidence 56889999999999999998886555567788887543
No 209
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=30.06 E-value=1.6e+02 Score=31.85 Aligned_cols=69 Identities=6% Similarity=0.019 Sum_probs=51.9
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRL 615 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~ 615 (836)
...|-.|...+ ..+...+++.|++.++.+|+.-..+.-.-. +...+........++++.||++-.|.|.
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~--g~~~~~~~~~~~A~~~~VPV~lHLDHg~ 85 (284)
T PRK09195 17 GYAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPGTFSYA--GTEYLLAIVSAAAKQYHHPLALHLDHHE 85 (284)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChhHHhhC--CHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 45555666554 488999999999999999998776441101 1125778889999999999999889885
No 210
>COG0679 Predicted permeases [General function prediction only]
Probab=29.98 E-value=7.6e+02 Score=26.94 Aligned_cols=134 Identities=15% Similarity=0.114 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhhccCCC-CchhhHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 003256 296 VNYTIGAAMLGIVIPAGP-PLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVASIL 374 (836)
Q Consensus 296 ~~~~lGaf~aGl~i~~~~-~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l 374 (836)
.++.+=|+++|+++...+ +....+.+-++.+ .+...|+=.+..|+.++..... .............-.+...+..++
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~-~~~~~~~~~~~~~kll~~Pl~~~~ 244 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLK-GSKPPIILIALSLKLLLAPLVALL 244 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhc-cccchhHHHHHHHHHHHHHHHHHH
Confidence 356666667777766421 2333444444444 7889999999999999985444 222222323333345667777888
Q ss_pred HHhhcCCChHHHHHHHHHh--hhhhhHHHHHHhhhhhccccchhhHHHHHHHHHHHHHhHHHHH
Q 003256 375 ATTCFRTSFRNALLFSCFV--NIKGVSELVTFLRWRQRELIDVQTYSVLVLTNLAVTAIVTPLI 436 (836)
Q Consensus 375 ~~~~~~~~~real~lg~~m--~~rG~v~l~~~~~~~~~~ii~~~~~~~~vl~~lv~t~i~~plv 436 (836)
..+..+++.-+. ....++ .|.+....+++. +.+.-.+..-+.+.++.+++ .++-|.+
T Consensus 245 ~~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a~---~~~~~~~laa~~i~ist~ls-~~t~p~~ 303 (311)
T COG0679 245 VAKLLGLSGLAL-QVLVLLSAMPTAVNAYVLAR---QYGGDPRLAASTILLSTLLS-LLTLPLL 303 (311)
T ss_pred HHHHcCCChHHH-HHHHHHhhCcHHhHHHHHHH---HhCCChHHHHHHHHHHHHHH-HHHHHHH
Confidence 888888876554 222222 355555544444 45544455555556666664 4444433
No 211
>PRK01658 holin-like protein; Validated
Probab=29.80 E-value=3.6e+02 Score=25.29 Aligned_cols=95 Identities=11% Similarity=0.129 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCh---hHHHHhhhceeccccccccccccccccCCCchHHHHH-----HHHHHHHH
Q 003256 50 VVMLQVSLAFSISQILYILLRPLKQPK---FVSNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQA-----ASTIGGIY 121 (836)
Q Consensus 50 ~~llqi~lil~~s~l~~~ll~rl~~P~---iv~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~-----l~~iGl~~ 121 (836)
.++.|+++++.+..+...+.+-+++|- ++|.++.=+.+ .++..+ .+.++. ++++++.|
T Consensus 5 ~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L---~~~~ik-----------~~~v~~~a~~Ll~~m~llF 70 (122)
T PRK01658 5 KLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLL---SFKILK-----------LKWIELGAETLLAELPLFF 70 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---HhCCcC-----------HHHHHHHHHHHHHHHHHHH
Confidence 467888888888777777777666553 33333211111 122211 122222 33333333
Q ss_pred HHHHhhhccCcchhhhccchhhHHHHHHHHHHHHHHH
Q 003256 122 FVFINTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISL 158 (836)
Q Consensus 122 llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~ 158 (836)
+==.+|+=-..+.+++++.+...+-+.+.++.++...
T Consensus 71 VPa~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg 107 (122)
T PRK01658 71 IPSAVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTG 107 (122)
T ss_pred HHhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333566555666666666655555555555444433
No 212
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=29.42 E-value=2.3e+02 Score=31.62 Aligned_cols=72 Identities=7% Similarity=-0.042 Sum_probs=52.0
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCC----CCc-ccc--------cchhhhHHHHHHhccCCcceEE
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPP----NEE-TEG--------RAACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~----~g~-~~~--------~~~~~gsv~~~Vl~~ApCsVgI 609 (836)
...|-.|.... ..+...|++.|++.++.+||.-+.+. .|. .+. ....+........+++.+||++
T Consensus 20 ~yAV~AfNv~n--~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVal 97 (350)
T PRK09197 20 GFALPAVNVVG--TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVIL 97 (350)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 45566666664 47899999999999999999887653 221 010 0001667888999999999999
Q ss_pred EEcCCCC
Q 003256 610 FVDKRLN 616 (836)
Q Consensus 610 lvdrg~~ 616 (836)
-.|.|..
T Consensus 98 HLDHg~~ 104 (350)
T PRK09197 98 HTDHCAK 104 (350)
T ss_pred ECCCCCC
Confidence 8899855
No 213
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=28.94 E-value=2.1e+02 Score=26.99 Aligned_cols=59 Identities=19% Similarity=0.124 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHhcCCcEEEEecCCC-CCcccccchhhhHHHHHHhccCCcceEEEEcCCC
Q 003256 556 ETMHESICKLVKDNCITLILLQFIPP-NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRL 615 (836)
Q Consensus 556 ~~m~~~I~~~A~~~~adlIi~~~h~~-~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~ 615 (836)
....+.+.++.++.+++.||+|.-.+ ||.........+...+++-++-+.||- ++|...
T Consensus 34 ~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~-~~DEr~ 93 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVV-LWDERL 93 (130)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEE-EEcCCc
Confidence 34568899999999999999998777 676544444667788887777788885 677653
No 214
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=28.34 E-value=55 Score=35.79 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=34.5
Q ss_pred EEEEEcCChHHHHHHHHhcc-cCCcEEEEcccCCCCccccccCCCCCCCCcccccc
Q 003256 699 CRRIDANDSNQLVNAFRSLV-SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIG 753 (836)
Q Consensus 699 y~e~~v~~g~~~~~~i~~~~-~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~ig 753 (836)
+.+.......+..+..+++. ++||+||++-+-+.-+.+..||.+-...| ||.|+
T Consensus 36 ~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~-LgilP 90 (301)
T COG1597 36 LSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP-LGILP 90 (301)
T ss_pred EEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc-eEEec
Confidence 33333433345666666664 56899999888877777777876654444 66664
No 215
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=28.02 E-value=5.6e+02 Score=30.22 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhccccHHHHHH-HHHhcc
Q 003256 143 YSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAYPVLVD-AISELK 198 (836)
Q Consensus 143 ~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~~vv~~-iL~el~ 198 (836)
..++..++++.+++.+++..+++.........++.+.+-+++-+..++.. +-++++
T Consensus 358 glia~iaL~~~v~~~l~~~~l~g~~l~l~siaGlil~iG~~VD~~IVI~ErIreel~ 414 (498)
T PRK05812 358 GLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFERIREELR 414 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhheeEEeceEEEeHHHHHHHH
Confidence 34445555566666666666666544421111355555555555444443 333444
No 216
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=27.86 E-value=76 Score=36.30 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=21.6
Q ss_pred ChHHHHHHHHhcc--cCCcEEEEcccCCC
Q 003256 706 DSNQLVNAFRSLV--SDNDLVIVGRQQPF 732 (836)
Q Consensus 706 ~g~~~~~~i~~~~--~~~DLiivG~~~~~ 732 (836)
.+.+++++|+.+. +++|++||||++++
T Consensus 177 A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 177 AAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred cHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 3578888888774 55999999999873
No 217
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=27.68 E-value=72 Score=31.27 Aligned_cols=96 Identities=18% Similarity=0.229 Sum_probs=49.7
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeec---CCcccc---------hhhhhhHHHHHHHHHhhcCCC---
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLE---ENLVEE---------EDDKCLDEVVMNDFMASNFGN--- 694 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~---~~~~~~---------~~e~~~d~~~l~~~~~~~~~~--- 694 (836)
++.+.|.||+|.. +|.-|-+..|-+++++.+.-. +..... -..-++|.+.+++-.+-..+.
T Consensus 2 ~v~vLfSGGKDSS----LaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~iedg~P 77 (198)
T COG2117 2 DVYVLFSGGKDSS----LAALILDKLGYEVELVTVNFGVLDSWKYARETAAILGFPHEVLQLDREILEDAVEMIIEDGYP 77 (198)
T ss_pred ceEEEecCCCchh----HHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHHhCCCcceeccCHHHHHHHHHHHHhcCCC
Confidence 5789999999994 555566666666666655322 111000 011234445554444332111
Q ss_pred -CCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCcccc
Q 003256 695 -PNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLL 737 (836)
Q Consensus 695 -~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~ 737 (836)
..+.|. .+-.++++.+ ++||.+.=|+++...-|.+
T Consensus 78 ~~aIq~i------H~~alE~~A~--r~~~~iaDGTRRDDrvP~l 113 (198)
T COG2117 78 RNAIQYI------HEMALEALAS--REVDRIADGTRRDDRVPKL 113 (198)
T ss_pred chHHHHH------HHHHHHHHHH--HHHHHHcCCCcccccCccc
Confidence 112221 1122233332 3699999999987655543
No 218
>COG3748 Predicted membrane protein [Function unknown]
Probab=27.05 E-value=5.1e+02 Score=28.48 Aligned_cols=40 Identities=8% Similarity=0.151 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Q 003256 328 SNFFLPFFYIHVGQQIDIYSINNWRAFAALELIIMAAYIGK 368 (836)
Q Consensus 328 ~~~flPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K 368 (836)
+-+-+|+.|+++.=+..+..=. ..+|.++.++.+.++..|
T Consensus 226 nylTLPVlF~MlSNHyp~~~gt-~fnWii~alv~l~gV~IR 265 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLAFGT-QFNWIIAALVFLMGVLIR 265 (407)
T ss_pred ceehHHHHHHHHhccCcccccC-chhHHHHHHHHHHHHHHH
Confidence 5578999999876666554333 457766555555544444
No 219
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=26.78 E-value=8.2e+02 Score=26.28 Aligned_cols=163 Identities=10% Similarity=0.115 Sum_probs=84.5
Q ss_pred HHHHHHHHhcCCcEEEEecCCC--CC---cccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCCCCCCcccEEEEE
Q 003256 560 ESICKLVKDNCITLILLQFIPP--NE---ETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVF 634 (836)
Q Consensus 560 ~~I~~~A~~~~adlIi~~~h~~--~g---~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~I~v~ 634 (836)
.+..+.+++..+|.|-+-++-. ++ ....+-.....+.+.|-+...+||.+ | +
T Consensus 105 ~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v---K-----------------l--- 161 (296)
T cd04740 105 VEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV---K-----------------L--- 161 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE---E-----------------e---
Confidence 3455556677899998866532 11 11122235566777776666777654 1 0
Q ss_pred ccCCcchHHHHHHHHHhhcCCCeE-EEEEEEeecC-----Cc----------ccchhhhhhHHHHHHHHHhhcCCCCCEE
Q 003256 635 FIGGPDDREAMALVSHMSSNPGVR-ITLSRIYLEE-----NL----------VEEEDDKCLDEVVMNDFMASNFGNPNVV 698 (836)
Q Consensus 635 f~Gg~ddreAL~~A~rmA~~~~~~-Ltvvrv~~~~-----~~----------~~~~~e~~~d~~~l~~~~~~~~~~~~v~ 698 (836)
+++..+..++|.++.+. ++. +++..-.... .. ......+...-+++.++++.. +-.+.
T Consensus 162 ---~~~~~~~~~~a~~~~~~-G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii 235 (296)
T cd04740 162 ---TPNVTDIVEIARAAEEA-GADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPII 235 (296)
T ss_pred ---CCCchhHHHHHHHHHHc-CCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEE
Confidence 12234666777665544 443 4443221110 00 000111223346777777653 22333
Q ss_pred EEEEEcCChHHHHHHHHhcccCCcEEEEcccCCC----CccccccCCCCCCCCccccccch
Q 003256 699 CRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPF----SSRLLEETKPWVEYDELGIIGDM 755 (836)
Q Consensus 699 y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~----~~~~~~Gl~~w~e~~eLG~igd~ 755 (836)
.. =-+.++++..+.++ .+.|++.+||.--. ...+..|+.+|.|..-...+.|.
T Consensus 236 ~~-GGI~~~~da~~~l~---~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~g~~~~~~~ 292 (296)
T cd04740 236 GV-GGIASGEDALEFLM---AGASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGIKSIEEL 292 (296)
T ss_pred EE-CCCCCHHHHHHHHH---cCCCEEEEchhhhcChHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 22 12456677777775 34899999997432 23555667777665444444443
No 220
>PRK01821 hypothetical protein; Provisional
Probab=26.74 E-value=4.1e+02 Score=25.33 Aligned_cols=26 Identities=8% Similarity=-0.033 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCC
Q 003256 50 VVMLQVSLAFSISQILYILLRPLKQP 75 (836)
Q Consensus 50 ~~llqi~lil~~s~l~~~ll~rl~~P 75 (836)
.++.|+++++.+..+...+.+-+++|
T Consensus 10 ~~l~~l~ill~~~~~Ge~i~~~l~lp 35 (133)
T PRK01821 10 QYLRAFVLIYACLYAGIFIASLLPIT 35 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45778888887777766666666654
No 221
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=26.62 E-value=2.3e+02 Score=31.69 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=53.3
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCC-cceEEEEcCCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAP-CTVGIFVDKRLN 616 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~Ap-CsVgIlvdrg~~ 616 (836)
...|-.|-... ..+...|++.|++.++.+|+.-..+.-... +...+....+...++++ .||++-.|.|..
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAEe~~sPvIlq~s~~~~~~~--g~~~~~~~v~~~ae~~~~VPVaLHLDHg~~ 87 (347)
T PRK13399 17 GYGVPAFNVNN--MEQILAIMEAAEATDSPVILQASRGARKYA--GDAMLRHMVLAAAEMYPDIPICLHQDHGNS 87 (347)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhC--CHHHHHHHHHHHHHhcCCCcEEEECCCCCC
Confidence 45666666664 478999999999999999999877551111 12357888889999996 999998899853
No 222
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.39 E-value=6.1e+02 Score=28.03 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=68.1
Q ss_pred CCcccccchhhhHHHHHHhccCC--cceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEE
Q 003256 582 NEETEGRAACLHGLNNNVLGYAP--CTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRI 659 (836)
Q Consensus 582 ~g~~~~~~~~~gsv~~~Vl~~Ap--CsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~L 659 (836)
+|..+-+-.....+.+.|-+..+ .+|++ +=...+ ...+|.+.+|+++++.++.+. + +
T Consensus 192 GGslenR~rf~~EiI~aIR~avG~d~~v~v--ris~~~----------------~~~~g~~~eea~~ia~~Le~~-G--v 250 (338)
T cd04733 192 GGSLENRARLLLEIYDAIRAAVGPGFPVGI--KLNSAD----------------FQRGGFTEEDALEVVEALEEA-G--V 250 (338)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCeEEE--EEcHHH----------------cCCCCCCHHHHHHHHHHHHHc-C--C
Confidence 35555555566788888887764 45554 211110 013677889999999999875 3 3
Q ss_pred EEEEEeecCCc--c----cch---hhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccC
Q 003256 660 TLSRIYLEENL--V----EEE---DDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQ 730 (836)
Q Consensus 660 tvvrv~~~~~~--~----~~~---~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~ 730 (836)
..+++-..... . ... .......++.+++++.. +..|...+. +.+.++..+++++ ..+|+|.+||.-
T Consensus 251 d~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~-i~t~~~a~~~l~~--g~aD~V~lgR~~ 325 (338)
T cd04733 251 DLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--KTPLMVTGG-FRTRAAMEQALAS--GAVDGIGLARPL 325 (338)
T ss_pred CEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc--CCCEEEeCC-CCCHHHHHHHHHc--CCCCeeeeChHh
Confidence 44554321100 0 000 00001124556666654 245554443 4455666666664 568999999975
Q ss_pred C
Q 003256 731 P 731 (836)
Q Consensus 731 ~ 731 (836)
-
T Consensus 326 i 326 (338)
T cd04733 326 A 326 (338)
T ss_pred h
Confidence 3
No 223
>PRK10711 hypothetical protein; Provisional
Probab=26.16 E-value=5e+02 Score=27.23 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=20.6
Q ss_pred hhhccCcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 003256 126 NTVKMDKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQ 165 (836)
Q Consensus 126 ~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~ 165 (836)
.=+-=+.+.+|++++....--..|.++.++.+..++.+++
T Consensus 75 vPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg 114 (231)
T PRK10711 75 FPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMG 114 (231)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3333445566666665554444455555555555555544
No 224
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=26.07 E-value=2e+02 Score=32.06 Aligned_cols=70 Identities=13% Similarity=0.061 Sum_probs=53.4
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCC-cceEEEEcCCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAP-CTVGIFVDKRLN 616 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~Ap-CsVgIlvdrg~~ 616 (836)
...|-.|.... ..+.+.|++.|++.++.+||.-..+...-. +...+....+...++++ .||++-.|.|..
T Consensus 17 ~yAVgAfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~--g~~~~~~~~~~~a~~~~~VPValHLDHg~~ 87 (347)
T PRK09196 17 GYGVPAFNVNN--LEQVQAIMEAADETDSPVILQASAGARKYA--GEPFLRHLILAAVEEYPHIPVVMHQDHGNS 87 (347)
T ss_pred CceEEEeeeCC--HHHHHHHHHHHHHhCCCEEEECCccHhhhC--CHHHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence 45666676665 488999999999999999999877541111 12357888888999997 999998898853
No 225
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.93 E-value=3.3e+02 Score=30.37 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=66.7
Q ss_pred CCcccccchhhhHHHHHHhccCCc------ceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCC
Q 003256 582 NEETEGRAACLHGLNNNVLGYAPC------TVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNP 655 (836)
Q Consensus 582 ~g~~~~~~~~~gsv~~~Vl~~ApC------sVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~ 655 (836)
+|..+.+-.....+.+.|-+..+| +|++ |-... . .+.||.+.+|.++++.++.+..
T Consensus 187 GGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~---R~s~~--------~-------~~~~g~~~ee~~~i~~~L~~~G 248 (353)
T cd04735 187 GGSLENRMRFPLAVVKAVQEVIDKHADKDFILGY---RFSPE--------E-------PEEPGIRMEDTLALVDKLADKG 248 (353)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhccccCCCceEEE---EECcc--------c-------ccCCCCCHHHHHHHHHHHHHcC
Confidence 455565666778888888887763 3332 21110 0 1357888899999999997663
Q ss_pred CeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCC
Q 003256 656 GVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQP 731 (836)
Q Consensus 656 ~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~ 731 (836)
+..+++-.................+.+++++....+..|...- -+.+.++..+++++ +.|++.+||.--
T Consensus 249 ---vD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~G-gi~t~e~ae~~l~~---gaD~V~~gR~li 317 (353)
T cd04735 249 ---LDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVG-SINTPDDALEALET---GADLVAIGRGLL 317 (353)
T ss_pred ---CCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEEC-CCCCHHHHHHHHHc---CCChHHHhHHHH
Confidence 3445543221110000001112344555555432122344221 13345566666664 489999999753
No 226
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=25.68 E-value=2.4e+02 Score=31.45 Aligned_cols=70 Identities=14% Similarity=0.056 Sum_probs=53.4
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCC-cceEEEEcCCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAP-CTVGIFVDKRLN 616 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~Ap-CsVgIlvdrg~~ 616 (836)
...|-.|...+ ..+...|++.|++.++.+|+.-+.+.-... +...+........++++ +||++-.|.|..
T Consensus 15 ~yAV~AfN~~n--~e~~~aii~AAEe~~sPvIlq~s~~~~~~~--g~~~~~~~~~~~ae~~~~VPValHLDHg~~ 85 (347)
T TIGR01521 15 GYGVPAFNVNN--MEQMRAIMEAADKTDSPVILQASRGARSYA--GAPFLRHLILAAIEEYPHIPVVMHQDHGNS 85 (347)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhC--CHHHHHHHHHHHHHhCCCCcEEEECCCCCC
Confidence 45566666665 478999999999999999999877541111 12357888889999998 999998899853
No 227
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=25.27 E-value=2.4e+02 Score=30.93 Aligned_cols=110 Identities=15% Similarity=0.092 Sum_probs=68.3
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCC-cceEEEEcCCCCCCCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAP-CTVGIFVDKRLNNCSNS 621 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~Ap-CsVgIlvdrg~~~~~~~ 621 (836)
...|-.|.... -.+..+|++.|++.++.+|+.-+.+.-.. .+...+........++++ .||++-.|.|.......
T Consensus 16 ~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIlq~s~~~~~~--~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~ 91 (307)
T PRK05835 16 GYGVGAFNFVN--FEMLNAIFEAGNEENSPLFIQASEGAIKY--MGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCE 91 (307)
T ss_pred CceEEEEEECC--HHHHHHHHHHHHHHCCCEEEEcCccHHhh--CChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHH
Confidence 45566777665 47899999999999999999987654110 122356778888899998 99999889885320000
Q ss_pred CCCCCcccEEEEEccCCc-chHHHHHHHHH---hhcCCCeE
Q 003256 622 AKPANFCYNVAVFFIGGP-DDREAMALVSH---MSSNPGVR 658 (836)
Q Consensus 622 ~~~~~~~~~I~v~f~Gg~-ddreAL~~A~r---mA~~~~~~ 658 (836)
..-...+..| -|+|+. +.+|=++..++ +|...|+.
T Consensus 92 ~ai~~GftSV--M~DgS~l~~eeNi~~T~~vve~Ah~~gv~ 130 (307)
T PRK05835 92 KAVKAGFTSV--MIDASHHAFEENLELTSKVVKMAHNAGVS 130 (307)
T ss_pred HHHHcCCCEE--EEeCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 0000112333 578876 44555554333 34444543
No 228
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=25.15 E-value=3.4e+02 Score=32.30 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhccccccccc-hhhHHHHH------HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhhhhhhHHH
Q 003256 329 NFFLPFFYIHVGQQIDIYSIN-NWRAFAAL------ELIIMAAYIGKVVASILATTCFRTSFRNALLFSCFVNIKGVSEL 401 (836)
Q Consensus 329 ~~flPlFF~~~Gl~idl~~l~-~~~~~~~~------~~ii~~~~~~K~~~~~l~~~~~~~~~real~lg~~m~~rG~v~l 401 (836)
.+++|---.-.|.+++-..+. +...+... +...++....|+.+. ....++++++|++.+|.+.+.---|..
T Consensus 103 ~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPVtv 180 (575)
T KOG1965|consen 103 LVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPVTV 180 (575)
T ss_pred HHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCchHH
Confidence 345555444568888765553 11111110 001122222333333 234568899999999988875544443
No 229
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=25.05 E-value=6.1e+02 Score=28.54 Aligned_cols=126 Identities=13% Similarity=0.067 Sum_probs=65.9
Q ss_pred CCcccccchhhhHHHHHHhccCC--cceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEE
Q 003256 582 NEETEGRAACLHGLNNNVLGYAP--CTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRI 659 (836)
Q Consensus 582 ~g~~~~~~~~~gsv~~~Vl~~Ap--CsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~L 659 (836)
+|.++-+-.....+.+.|-+..+ .+|++ .-+..+ .++-.||.+.+|++.++..+.+. +
T Consensus 193 GGslenR~Rf~~eii~aIr~~vg~~~~v~v--Rls~~~--------------~~~~~g~~~~~e~~~~~~~l~~~----~ 252 (370)
T cd02929 193 GGSLENRARFWRETLEDTKDAVGDDCAVAT--RFSVDE--------------LIGPGGIESEGEGVEFVEMLDEL----P 252 (370)
T ss_pred CCChHhhhHHHHHHHHHHHHHcCCCceEEE--EecHHH--------------hcCCCCCCCHHHHHHHHHHHHhh----C
Confidence 45566666678899999988764 45554 111110 01122456778999999999764 2
Q ss_pred EEEEEeecCCccc----chhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCC
Q 003256 660 TLSRIYLEENLVE----EEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPF 732 (836)
Q Consensus 660 tvvrv~~~~~~~~----~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~ 732 (836)
.++++-....... ...+.....++.+++++.. +..|...- .+.+.++..++|++ ..+|+|.+||.--.
T Consensus 253 D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G-~i~~~~~~~~~l~~--g~~D~V~~gR~~la 324 (370)
T cd02929 253 DLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT--SKPVVGVG-RFTSPDKMVEVVKS--GILDLIGAARPSIA 324 (370)
T ss_pred CEEEecCCCccccccccccCCccccHHHHHHHHHHC--CCCEEEeC-CCCCHHHHHHHHHc--CCCCeeeechHhhh
Confidence 4444422110000 0000111124555666543 23444221 13344555555654 55899999997643
No 230
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=24.71 E-value=3e+02 Score=30.74 Aligned_cols=72 Identities=10% Similarity=-0.013 Sum_probs=52.0
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCC---Cccccc----------chhhhHHHHHHhccCCcceEE
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPN---EETEGR----------AACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~---g~~~~~----------~~~~gsv~~~Vl~~ApCsVgI 609 (836)
...|-.+-..+ ..+...|++.|++.++.+||.-+.+.. +..... ...+........+++++||++
T Consensus 15 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVal 92 (345)
T cd00946 15 GFAIPAVNCTS--SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVL 92 (345)
T ss_pred CceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 44555555554 478899999999999999998877531 111000 014678888999999999999
Q ss_pred EEcCCCC
Q 003256 610 FVDKRLN 616 (836)
Q Consensus 610 lvdrg~~ 616 (836)
-.|.|..
T Consensus 93 HLDHg~~ 99 (345)
T cd00946 93 HTDHCAK 99 (345)
T ss_pred ECCCCCC
Confidence 8898854
No 231
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=23.62 E-value=7.8e+02 Score=27.83 Aligned_cols=112 Identities=11% Similarity=-0.038 Sum_probs=59.6
Q ss_pred HHHHHhc-ccCCChhH-HHHhhhceeccccccccccccccccCCCchHHHHHHHHHHHHHHHHHhhhc-cCcchhhhccc
Q 003256 64 ILYILLR-PLKQPKFV-SNTLSGIILGPSFLGRIKMFDAYVTGGRGMVFAQAASTIGGIYFVFINTVK-MDKGMIPRTIK 140 (836)
Q Consensus 64 l~~~ll~-rl~~P~iv-~~IlaGillGPs~Lg~~~~~~~~lfp~~~~~~l~~l~~iGl~~llF~~Gle-~d~~~l~~~~~ 140 (836)
.++.++. .+++|.-+ .+++.=.++-- .+..|+-. -....+..++++.=-.-.+|+-+|+. +|++++-....
T Consensus 278 ~~g~il~kf~~~P~~va~MIil~a~lk~--~nlvp~~i----~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt 351 (438)
T COG3493 278 MAGGILGKFIGLPGPVAFMIILVAILKA--ANLVPKEI----EEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALT 351 (438)
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHH--hCcCCHHH----HHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhc
Confidence 3444444 46689777 33333333332 22222100 00123455566665566788999997 99999887665
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHhhccccccchHHHHHHHhhcc
Q 003256 141 KTYSVSLTVFIVPLL-ISLLVGHREQYKIPRIHDQGISISFVASK 184 (836)
Q Consensus 141 ~~~~ia~~~~l~p~~-lg~~~~~~l~~~~~~~~~~sl~lg~~ls~ 184 (836)
...++-..++++..+ .++.++++++..+. ..++.-|++++.
T Consensus 352 ~~~vii~~~vVl~~i~~~~f~grl~~~YPV---EaAI~aglC~a~ 393 (438)
T COG3493 352 WQNVIIALSVVLGAILGGAFVGRLMGFYPV---EAAITAGLCMAN 393 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCch---HHHHHHhHHhcC
Confidence 555444444444443 44555666654433 123555566664
No 232
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=23.16 E-value=7.1e+02 Score=27.37 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=11.6
Q ss_pred HHHHHHHHhccccCCh
Q 003256 188 PVLVDAISELKLLNSE 203 (836)
Q Consensus 188 ~vv~~iL~el~l~~s~ 203 (836)
|++.++.++.|+-+++
T Consensus 118 Pi~~~~~~~~~i~~~~ 133 (351)
T PF03600_consen 118 PIVLSLARKLGIPPSP 133 (351)
T ss_pred HHHHHHHHHcCCChHH
Confidence 7888888888864443
No 233
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=23.10 E-value=9.9e+02 Score=25.94 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 242 LSLCAMSLFTFLVLWPTIQWIIRR 265 (836)
Q Consensus 242 ~~~v~~~~~~~~v~r~~~~~i~~r 265 (836)
++.++-.+...++..|++.|+.++
T Consensus 265 ~Gli~s~~~tl~~~~~~l~~~~~~ 288 (292)
T PRK08578 265 FGLLADLMNTWLLNAGILRWYKTE 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444455667888999888665
No 234
>PRK01658 holin-like protein; Validated
Probab=22.87 E-value=6.4e+02 Score=23.64 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=9.8
Q ss_pred HHHHHHH--Hhhccccccccc
Q 003256 331 FLPFFYI--HVGQQIDIYSIN 349 (836)
Q Consensus 331 flPlFF~--~~Gl~idl~~l~ 349 (836)
-+|+||+ .+|.--..+.+.
T Consensus 65 ~m~llFVPa~VGi~~~~~ll~ 85 (122)
T PRK01658 65 ELPLFFIPSAVGVMNYGDFLS 85 (122)
T ss_pred HHHHHHHHhhhHHHHhHHHHH
Confidence 3567776 444433444444
No 235
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.61 E-value=2e+02 Score=31.87 Aligned_cols=71 Identities=6% Similarity=-0.119 Sum_probs=52.3
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecC-CC---CC-cc---------cccchhhhHHHHHHhccCCcceE
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFI-PP---NE-ET---------EGRAACLHGLNNNVLGYAPCTVG 608 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h-~~---~g-~~---------~~~~~~~gsv~~~Vl~~ApCsVg 608 (836)
...|-.+...+ ..+...+++.|++.++..||.-+. +. .| .. ..+-..+........+++.+||+
T Consensus 12 ~yAV~AfN~~n--~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~ 89 (340)
T cd00453 12 NFALPAVNCVG--TDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVI 89 (340)
T ss_pred CceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 45555666654 478899999999999999998876 22 12 00 00123577888999999999999
Q ss_pred EEEcCCC
Q 003256 609 IFVDKRL 615 (836)
Q Consensus 609 Ilvdrg~ 615 (836)
+-.|.|.
T Consensus 90 lHLDH~~ 96 (340)
T cd00453 90 LHTDHCA 96 (340)
T ss_pred EEcCCCC
Confidence 9889986
No 236
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=22.54 E-value=3.3e+02 Score=29.64 Aligned_cols=71 Identities=7% Similarity=0.047 Sum_probs=52.6
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccC--CcceEEEEcCCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYA--PCTVGIFVDKRLN 616 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~A--pCsVgIlvdrg~~ 616 (836)
...|-.+...+ ..+...|++.|++.++.+|+.-..+.-... .+-..+........+++ ..||++-.|.|..
T Consensus 17 ~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~-~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~ 89 (288)
T TIGR00167 17 GYAIPAFNINN--LETINAVLEAAAEEKSPVIIQFSNGAAKYI-AGLGAISAMVKAMSEAYPYGVPVALHLDHGAS 89 (288)
T ss_pred CceEEEEEECC--HHHHHHHHHHHHHHCCCEEEECCcchhhcc-CCHHHHHHHHHHHHHhccCCCcEEEECCCCCC
Confidence 45555666665 478899999999999999998766441100 11236788888999999 8999998899853
No 237
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=22.46 E-value=8.6e+02 Score=25.04 Aligned_cols=26 Identities=19% Similarity=-0.029 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhchhHHH-HHHHHHhh
Q 003256 283 GALVMAVACDSMRVNYTI-GAAMLGIV 308 (836)
Q Consensus 283 ~~l~~~~iae~~G~~~~l-Gaf~aGl~ 308 (836)
+.+...+..+++|-.++. .+++.|++
T Consensus 138 i~~~~~~~~~~~G~~Gl~~~a~isGl~ 164 (211)
T PF13194_consen 138 ILLLSRAAQRWFGDSGLYALAAISGLA 164 (211)
T ss_pred HHHHHHHHHHHHChhhHHHHHHHHHhh
Confidence 334556777788877764 67778875
No 238
>TIGR03248 galactar-dH20 galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0714).
Probab=22.34 E-value=6.8e+02 Score=29.47 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=53.4
Q ss_pred chHHHHHHHHHhhcCCCeE--EEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCC-hH-----HHH
Q 003256 640 DDREAMALVSHMSSNPGVR--ITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDAND-SN-----QLV 711 (836)
Q Consensus 640 ddreAL~~A~rmA~~~~~~--Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~-g~-----~~~ 711 (836)
|.+...+.-..++.|||+- +.|+-+--. ...-+.+.++.+.+. +..++.+-...-.. |. ...
T Consensus 174 d~~~~~r~L~g~~~hPNvgg~vLvvgLGCE---------~~~~~~l~~~i~~~~-~~~~v~~l~iQ~~g~g~~~ti~~g~ 243 (507)
T TIGR03248 174 DAIVPIRTLRNIALNPNFGGEAMVVGLGCE---------KLQPERLLPEDTSPA-GLGDAGVYRLQDERHGFAAMIEAIM 243 (507)
T ss_pred HHHHHHHHHHHhccCCccCCEEEEEEeCcc---------cCCHHHHHHhhcccc-CCCceEEEEEEccCCCHHHHHHHHH
Confidence 3455567788889999996 444443221 111223444443221 22456555432222 21 122
Q ss_pred HHHHhc----c----cCCcE--EEEcccCCCCccccccCCCCCCCCccccccchhhcc
Q 003256 712 NAFRSL----V----SDNDL--VIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASA 759 (836)
Q Consensus 712 ~~i~~~----~----~~~DL--iivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~ 759 (836)
+.++++ . ...++ .+||-.-+ .|- |.|..+..|-+|...|+|++.
T Consensus 244 ~~~~~l~~~a~~~~R~~~pls~L~vGl~CG-GSD---~~SGitANPavG~~sD~LV~~ 297 (507)
T TIGR03248 244 EMAERRLAKLNRRRRETVPASELVVGMQCG-GSD---AFSGVTANPAVGFAADLLVRA 297 (507)
T ss_pred HHHHHHHHHhhhCCcccCCHHHcEEEeecC-CCC---CccccccChHHHHHHHHHHHc
Confidence 223332 1 11221 44555433 233 555566789999999999963
No 239
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=22.17 E-value=5.7e+02 Score=28.45 Aligned_cols=125 Identities=13% Similarity=0.077 Sum_probs=64.3
Q ss_pred CcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEE
Q 003256 583 EETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLS 662 (836)
Q Consensus 583 g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvv 662 (836)
|.++.+-.....+.+.|-+..+-++-|.+.-+..+ ...||.+-+|++.+++++.+. + +..+
T Consensus 181 GslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D----------------~~~~g~~~~e~~~i~~~Le~~-G--~d~i 241 (353)
T cd02930 181 GSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLD----------------LVEGGSTWEEVVALAKALEAA-G--ADIL 241 (353)
T ss_pred CCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccc----------------cCCCCCCHHHHHHHHHHHHHc-C--CCEE
Confidence 44444445666777777766654433221111110 013677889999999999765 3 3334
Q ss_pred EEee-----cCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCC
Q 003256 663 RIYL-----EENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQP 731 (836)
Q Consensus 663 rv~~-----~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~ 731 (836)
++.. +.........+....++.+++++.. +..|...+. +.+.++..+.+++ ...|++.+||.--
T Consensus 242 ~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~-i~~~~~a~~~i~~--g~~D~V~~gR~~l 310 (353)
T cd02930 242 NTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV--DIPVIASNR-INTPEVAERLLAD--GDADMVSMARPFL 310 (353)
T ss_pred EeCCCcCCCCCccccccCCchhhHHHHHHHHHhC--CCCEEEcCC-CCCHHHHHHHHHC--CCCChhHhhHHHH
Confidence 4411 1000000000111123456666653 234554432 4455566666664 5689999999754
No 240
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=22.07 E-value=1.4e+02 Score=28.29 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=27.1
Q ss_pred EEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCC
Q 003256 547 QPFIMISQYETMHESICKLVKDNCITLILLQFIPP 581 (836)
Q Consensus 547 ~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~ 581 (836)
.-..++-|...||..|.++|++.++|++|-|..+.
T Consensus 72 ~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e 106 (127)
T PF03686_consen 72 DLIYSIRPPPELQPPILELAKKVGADLIIRPLGGE 106 (127)
T ss_dssp EEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB
T ss_pred cEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCC
Confidence 45677778899999999999999999999999754
No 241
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=22.02 E-value=1.9e+02 Score=28.04 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=32.7
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~ 691 (836)
++++.|-||+|+.-.|.++.+...+. .++++-... |-..-.++++++.++.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~-------e~p~t~~~~~~~~~~~ 51 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGY-------EFPETYEFVDELAKRY 51 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-ST-------B-HHHHHHHHHHHHHT
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCc-------cCHHHHHHHHHHHhhh
Confidence 47899999999999999999988774 566553321 1122235677776665
No 242
>PHA03164 hypothetical protein; Provisional
Probab=21.50 E-value=90 Score=26.35 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=34.5
Q ss_pred CCceeeeeecCCccccccccCccccccccCccCCCCC-CccchHHHHHHHHHHHHHHHHHHHH
Q 003256 7 NDTRHRHWIEDDRFTTCVSYNESTKFSYHGINLDEEA-VSSVLPVVMLQVSLAFSISQILYIL 68 (836)
Q Consensus 7 ~~~~~~~~~~~~~~~~C~~~~~~~~~~s~gi~~~~~p-l~~~l~~~llqi~lil~~s~l~~~l 68 (836)
.|.++.|-+.|..|.-|...+.. +.++...|+...- +.+ +.+.-+.++.|+++..+++.+
T Consensus 21 ~gqVspH~~NdtsfveclpPpqi-srtawnlwnnrRktftF-lvLtgLaIamILfiifvlyvF 81 (88)
T PHA03164 21 DGQVSPHQENDTSFVECLPPPQI-SRTAWNLWNNRRKTFTF-LVLTGLAIAMILFIIFVLYVF 81 (88)
T ss_pred ccccccccccCcccceecCCccc-CchhHHHHHhhhheeeh-HHHHHHHHHHHHHHHHHHHhe
Confidence 35677777777777789877765 2344556654221 222 334455666666666555543
No 243
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=21.44 E-value=1.3e+03 Score=26.88 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHhhccccH
Q 003256 151 IVPLLISLLVGHREQYKIPRIHDQGISISFVASKCAY 187 (836)
Q Consensus 151 l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls~Ts~ 187 (836)
.+|+.+++-.+-.++.... .++.+|+++...++
T Consensus 160 FLPi~v~~saak~f~~np~----lg~~ig~~L~~P~~ 192 (472)
T PRK09796 160 FLPLMVAASAAIKFKTNMS----LAIAIAGVLVHPSF 192 (472)
T ss_pred HHHHHHHHHHHHHhCCChH----HHHHHHHHHHCcch
Confidence 4677777777776654432 35667776665444
No 244
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.42 E-value=2.5e+02 Score=30.46 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=68.1
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCC-CCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNN-CSNS 621 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~-~~~~ 621 (836)
...|-.|...+ ..+..++++.|++.++.+||.-..+.-. -.+...+........+++..||++-.|.|... ....
T Consensus 17 ~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIl~~~~~~~~--~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~ 92 (283)
T PRK07998 17 HVLAGAFNTTN--LETTISILNAIERSGLPNFIQIAPTNAQ--LSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQ 92 (283)
T ss_pred CCEEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECcHhHHh--hCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHH
Confidence 45556666654 4688999999999999999988664310 01223577888899999999999988988431 0000
Q ss_pred CCCCCcccEEEEEccCCcch-HHHHHH---HHHhhcCCCeE
Q 003256 622 AKPANFCYNVAVFFIGGPDD-REAMAL---VSHMSSNPGVR 658 (836)
Q Consensus 622 ~~~~~~~~~I~v~f~Gg~dd-reAL~~---A~rmA~~~~~~ 658 (836)
. -...+..|. |+|+..+ +|=++. +.++|...|+.
T Consensus 93 A-i~~GftSVM--~DgS~l~~eeNi~~T~~vve~Ah~~gv~ 130 (283)
T PRK07998 93 A-VRAGFTSVM--IDGAALPFEENIAFTKEAVDFAKSYGVP 130 (283)
T ss_pred H-HHcCCCEEE--EeCCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 0 001123443 4776644 355544 44455556654
No 245
>PRK14561 hypothetical protein; Provisional
Probab=21.41 E-value=4.9e+02 Score=26.31 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=22.4
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEee
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYL 666 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~ 666 (836)
+|+|.|-||.|.--.+..+.+. -++..+++..
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~~ 33 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVNF 33 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEec
Confidence 6899999999998887766554 2344555543
No 246
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=21.31 E-value=3e+02 Score=24.33 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=25.9
Q ss_pred EEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeec
Q 003256 631 VAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLE 667 (836)
Q Consensus 631 I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~ 667 (836)
|+|.+-||+|+--.+.++.+... ++..+++..+
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~----~~~~~~~~~~ 33 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGY----QVIAVTVDHG 33 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCC----CEEEEEEcCC
Confidence 47889999999998888887632 6788877654
No 247
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=21.20 E-value=6.6e+02 Score=23.83 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCh
Q 003256 49 PVVMLQVSLAFSISQILYILLRPLKQPK 76 (836)
Q Consensus 49 ~~~llqi~lil~~s~l~~~ll~rl~~P~ 76 (836)
..++.|+++++.+..+..++.+-+++|-
T Consensus 5 ~~~~~q~~ii~~~~~~G~~i~~~l~lpl 32 (128)
T COG1380 5 MQILRQLAIILGFLFLGEWIASLLHLPL 32 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4578899999988888888877777663
No 248
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=20.77 E-value=1.3e+03 Score=26.52 Aligned_cols=36 Identities=25% Similarity=0.134 Sum_probs=23.8
Q ss_pred CcchhhhccchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003256 131 DKGMIPRTIKKTYSVSLTVFIVPLLISLLVGHREQY 166 (836)
Q Consensus 131 d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~ 166 (836)
|.+.+.|.+.+.+..-+....+..++|..++.++..
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~p 101 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQP 101 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 667777777777665555666666677776666654
No 249
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.62 E-value=1.8e+02 Score=31.91 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=39.3
Q ss_pred hccCCcceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEee
Q 003256 600 LGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYL 666 (836)
Q Consensus 600 l~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~ 666 (836)
|++.-+ |+++.|+.... ...|.|||||-+ -.......+||+..++.+--++-.-
T Consensus 191 Lk~G~~-v~~lpDqd~~~----------~~~vfvpFFg~~--a~T~t~~~~LA~~~~a~vip~~~~r 244 (308)
T COG1560 191 LKQGEA-VGYLPDQDYGP----------GESVFVPFFGVP--AATTTGPAKLARLTGAAVVPVFPVR 244 (308)
T ss_pred HhcCCe-EEEecCcccCC----------CCCeEeccCCCc--ccccchHHHHHHHhCCCEEEEEEEE
Confidence 444444 68999997653 346799999877 5566778899999888877776654
No 250
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=20.51 E-value=1.2e+03 Score=25.80 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=34.8
Q ss_pred hhccccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChHHHHHHHHHh---hhhhhHHHHHHhhh
Q 003256 339 VGQQIDIYSINN-WRAFAALELIIMAAYIGKVVASILATTC-FRTSFRNALLFSCFV---NIKGVSELVTFLRW 407 (836)
Q Consensus 339 ~Gl~idl~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~-~~~~~real~lg~~m---~~rG~v~l~~~~~~ 407 (836)
.|++++++++.+ ...+....+..+.-++...+..+..++. ++.+.. +.+|+.+ +|-|..+.+...++
T Consensus 56 mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lA 127 (328)
T TIGR00832 56 PLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLA 127 (328)
T ss_pred hhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHc
Confidence 346666666541 1223333344445555666666666654 355543 5666544 46666555555444
No 251
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=20.29 E-value=5.7e+02 Score=24.77 Aligned_cols=85 Identities=12% Similarity=0.124 Sum_probs=47.8
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHH
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQ 709 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~ 709 (836)
++++.|-||.|.--++.++.+. +-++..+++..+... ..+.+.++++.+.+. ...+.. .++ ..
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~g---~~~~~~--~~~-~~ 63 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDYGQRH-------AKEEEAAKLIAEKLG---PSTYVP--ARN-LI 63 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEECCCCC-------hhHHHHHHHHHHHHC---CCEEEe--CcC-HH
Confidence 4789999999999988887763 345666766532110 112245555555542 222221 122 11
Q ss_pred HHHHHHhc--ccCCcEEEEcccCC
Q 003256 710 LVNAFRSL--VSDNDLVIVGRQQP 731 (836)
Q Consensus 710 ~~~~i~~~--~~~~DLiivG~~~~ 731 (836)
....+.+. ..++|-++.|.+..
T Consensus 64 ~~~~l~~~a~~~g~~~i~~G~~~~ 87 (169)
T cd01995 64 FLSIAAAYAEALGAEAIIIGVNAE 87 (169)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccC
Confidence 22333333 35789999998875
No 252
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=20.03 E-value=89 Score=28.23 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHhcCCcEEEEecC
Q 003256 556 ETMHESICKLVKDNCITLILLQFI 579 (836)
Q Consensus 556 ~~m~~~I~~~A~~~~adlIi~~~h 579 (836)
.+-+++|+++|+++++||+|+|--
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESSH
T ss_pred CCCHHHHHHHHHHcCCCEEEECCh
Confidence 356799999999999999999964
Done!