Query 003256
Match_columns 836
No_of_seqs 342 out of 2216
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 18:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 5.2E-24 1.8E-28 233.6 9.8 301 110-440 59-384 (388)
2 3mt0_A Uncharacterized protein 99.8 3.7E-20 1.3E-24 199.2 21.8 255 463-775 8-278 (290)
3 3olq_A Universal stress protei 99.8 6E-20 2E-24 199.9 19.8 276 463-775 8-307 (319)
4 3cis_A Uncharacterized protein 99.8 2E-19 7E-24 195.2 19.7 277 462-774 19-307 (309)
5 3loq_A Universal stress protei 99.8 5.1E-20 1.8E-24 198.4 13.0 265 463-774 23-291 (294)
6 3ab8_A Putative uncharacterize 99.8 2.3E-18 7.8E-23 182.7 16.9 255 464-772 2-268 (268)
7 3fdx_A Putative filament prote 99.2 1E-10 3.5E-15 111.0 11.1 137 463-609 2-141 (143)
8 3s3t_A Nucleotide-binding prot 99.2 1.1E-10 3.6E-15 111.3 10.5 137 463-609 6-144 (146)
9 3s3t_A Nucleotide-binding prot 99.1 1.7E-10 5.9E-15 109.8 10.6 129 627-772 4-146 (146)
10 1mjh_A Protein (ATP-binding do 99.1 4.7E-10 1.6E-14 108.9 13.2 138 463-610 6-157 (162)
11 3hgm_A Universal stress protei 99.1 9.3E-11 3.2E-15 111.7 7.4 136 464-609 4-146 (147)
12 2z08_A Universal stress protei 99.1 1.9E-10 6.6E-15 108.5 9.3 132 463-609 3-135 (137)
13 3tnj_A Universal stress protei 99.1 2.4E-10 8.1E-15 109.5 9.6 137 463-610 7-145 (150)
14 3dlo_A Universal stress protei 99.1 2.7E-10 9.2E-15 110.4 9.3 130 462-610 24-154 (155)
15 2dum_A Hypothetical protein PH 99.1 5.7E-10 2E-14 109.3 11.7 138 463-610 6-154 (170)
16 1tq8_A Hypothetical protein RV 99.1 4.7E-10 1.6E-14 109.6 10.8 136 462-610 17-156 (163)
17 3idf_A USP-like protein; unive 99.0 5.8E-10 2E-14 105.1 10.5 125 629-772 2-138 (138)
18 2gm3_A Unknown protein; AT3G01 99.0 1E-09 3.4E-14 108.2 11.9 142 463-612 6-163 (175)
19 3idf_A USP-like protein; unive 99.0 5.5E-10 1.9E-14 105.3 9.4 131 464-609 3-136 (138)
20 3fg9_A Protein of universal st 99.0 3.2E-10 1.1E-14 109.4 7.7 136 462-609 15-154 (156)
21 1mjh_A Protein (ATP-binding do 99.0 1.1E-09 3.8E-14 106.3 11.4 130 628-774 5-160 (162)
22 3hgm_A Universal stress protei 99.0 5.8E-10 2E-14 106.1 9.3 127 628-771 2-147 (147)
23 2z08_A Universal stress protei 99.0 9.1E-10 3.1E-14 103.8 10.0 126 628-772 2-137 (137)
24 3dlo_A Universal stress protei 99.0 6.1E-10 2.1E-14 107.9 9.0 130 627-772 23-155 (155)
25 3tnj_A Universal stress protei 99.0 1.4E-09 4.8E-14 104.0 10.8 128 628-774 6-148 (150)
26 2dum_A Hypothetical protein PH 99.0 1.7E-09 5.7E-14 106.0 11.3 132 628-774 5-157 (170)
27 3fdx_A Putative filament prote 99.0 2.2E-09 7.7E-14 101.6 11.1 126 629-772 2-143 (143)
28 1jmv_A USPA, universal stress 99.0 2.5E-09 8.5E-14 101.1 11.2 133 463-611 3-137 (141)
29 1tq8_A Hypothetical protein RV 98.9 1.8E-09 6E-14 105.5 9.1 130 627-774 16-159 (163)
30 3fg9_A Protein of universal st 98.9 1.9E-09 6.4E-14 104.1 9.1 129 627-772 14-156 (156)
31 2gm3_A Unknown protein; AT3G01 98.8 3.3E-08 1.1E-12 97.2 11.3 132 627-774 4-164 (175)
32 1jmv_A USPA, universal stress 98.7 2.4E-08 8.1E-13 94.3 9.4 126 628-774 2-139 (141)
33 3olq_A Universal stress protei 98.7 3E-08 1E-12 107.1 10.7 146 462-615 156-308 (319)
34 1q77_A Hypothetical protein AQ 98.7 4.5E-08 1.5E-12 92.1 10.1 128 463-609 5-136 (138)
35 3mt0_A Uncharacterized protein 98.7 2.4E-08 8.1E-13 106.7 9.3 135 462-612 134-276 (290)
36 1q77_A Hypothetical protein AQ 98.7 8.7E-08 3E-12 90.1 10.8 119 627-772 3-138 (138)
37 3cis_A Uncharacterized protein 98.6 5.7E-08 1.9E-12 104.7 8.4 132 626-775 17-163 (309)
38 3ab8_A Putative uncharacterize 98.5 8.5E-08 2.9E-12 101.0 6.9 130 629-775 1-151 (268)
39 3loq_A Universal stress protei 98.5 6E-08 2E-12 103.7 3.8 133 627-775 21-164 (294)
40 3zux_A Transporter, ASBTNM; tr 97.5 0.065 2.2E-06 57.9 28.9 101 115-224 45-149 (332)
41 3g40_A Na-K-CL cotransporter; 96.3 0.14 4.9E-06 53.2 17.6 246 460-774 18-278 (294)
42 1efp_B ETF, protein (electron 71.4 6.7 0.00023 40.2 6.9 92 638-743 36-141 (252)
43 1iv0_A Hypothetical protein; r 71.3 9.6 0.00033 33.0 6.9 56 557-614 38-94 (98)
44 1efv_B Electron transfer flavo 70.6 6.4 0.00022 40.4 6.6 93 637-743 38-144 (255)
45 1ni5_A Putative cell cycle pro 69.5 19 0.00063 40.0 10.6 94 629-731 14-119 (433)
46 1o97_C Electron transferring f 68.7 5.3 0.00018 41.3 5.5 85 634-731 32-123 (264)
47 3a2k_A TRNA(Ile)-lysidine synt 63.4 30 0.001 38.6 10.8 60 628-691 18-77 (464)
48 3zux_A Transporter, ASBTNM; tr 60.6 1.1E+02 0.0038 32.3 14.2 95 303-405 28-124 (332)
49 1wy5_A TILS, hypothetical UPF0 58.8 41 0.0014 35.4 10.3 58 629-691 25-83 (317)
50 1zun_A Sulfate adenylyltransfe 53.2 21 0.00071 38.0 6.8 56 629-691 47-102 (325)
51 1sur_A PAPS reductase; assimil 50.7 72 0.0025 31.1 10.1 52 629-691 45-96 (215)
52 1nu0_A Hypothetical protein YQ 45.9 33 0.0011 31.6 6.0 59 556-615 39-98 (138)
53 2oq2_A Phosphoadenosine phosph 40.1 44 0.0015 34.1 6.7 54 630-691 43-96 (261)
54 2wsi_A FAD synthetase; transfe 38.4 62 0.0021 33.9 7.6 93 629-732 54-169 (306)
55 3k32_A Uncharacterized protein 36.8 2E+02 0.0067 27.8 10.6 35 629-667 7-41 (203)
56 2l0e_A Sodium/hydrogen exchang 33.8 19 0.00066 24.5 1.7 25 175-199 6-30 (33)
57 3gr7_A NADPH dehydrogenase; fl 25.7 2E+02 0.0068 30.4 9.0 122 583-730 188-310 (340)
58 1vhx_A Putative holliday junct 24.5 1.1E+02 0.0039 28.2 6.0 59 555-614 40-99 (150)
59 3ih5_A Electron transfer flavo 23.9 1.1E+02 0.0038 30.2 6.1 80 638-731 18-102 (217)
60 2k3c_A TMIX peptide; membrane 23.7 1.6 5.5E-05 29.9 -5.1 27 286-312 5-31 (33)
61 1z41_A YQJM, probable NADH-dep 21.0 2.5E+02 0.0086 29.5 8.7 122 583-730 188-310 (338)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.89 E-value=5.2e-24 Score=233.61 Aligned_cols=301 Identities=11% Similarity=0.110 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchh----hhccc--hhhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHhhc
Q 003256 110 FAQAASTIGGIYFVFINTVKMDKGMI----PRTIK--KTYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQGISISFVAS 183 (836)
Q Consensus 110 ~l~~l~~iGl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~sl~lg~~ls 183 (836)
....+.+-.+.+|||.+|+|+|.+.+ ++.+| .....++.|+++|++++. .+.. . ...+.....+.+
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~--~--~~~~~~gw~ip~ 130 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNY--A--DPITREGWAIPA 130 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCC--S--STTHHHHTSSSS
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhc--C--ChhhhhhhHHHH
Confidence 45667888999999999999998866 55554 367889999999998832 2221 1 123566677778
Q ss_pred cccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHH-HHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003256 184 KCAYPVLVDAISELKL-LNSELGQLAISSALLHEIVGLLRLL-MAPLSKAKYRSVAIRIELSLCAMSLFTFLVLWPTIQW 261 (836)
Q Consensus 184 ~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~v~Di~~~~ll~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~r~~~~~ 261 (836)
.|+.+....++..++. .++..++.+++.|++||+.+|++++ +++ ++.+ ..+... .+++.++. +
T Consensus 131 ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~--~~~l~~-~~~~~~~~---------~ 195 (388)
T 1zcd_A 131 ATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLS--MASLGV-AAVAIAVL---------A 195 (388)
T ss_dssp CCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCC--HHHHHH-HHHHHHHH---------H
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcc--HHHHHH-HHHHHHHH---------H
Confidence 8999999999999764 4566679999999999999999999 654 1111 111111 11111111 2
Q ss_pred HHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhccCCC----CchhhHHHHHHHHHHHHHHHHH-H
Q 003256 262 IIRRIPERKPVKDFYIVAILTGALVMAVACDSMRVNYTIGAAMLGIVIPAGP----PLGSALVEKSEAILSNFFLPFF-Y 336 (836)
Q Consensus 262 i~~r~~~~~~~~e~~~~~il~~~l~~~~iae~~G~~~~lGaf~aGl~i~~~~----~~~~~l~~kl~~~~~~~flPlF-F 336 (836)
+.+|.. +++...+.++. +.+.+.++..|+|+++|+|++|+++|..+ +..+++++++++++..+++|+| |
T Consensus 196 ~l~r~~----v~~~~~y~~lg--l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaF 269 (388)
T 1zcd_A 196 VLNLCG----ARRTGVYILVG--VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAF 269 (388)
T ss_dssp HHHHTT----CCCTHHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHhc----chhHHHHHHHH--HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223321 12233344332 24457779999999999999999999853 3467899999999999999999 9
Q ss_pred HHhhccccccccchhhHHHHHHHHHHHHHHHHHHH----HHHHHhhc------CCChHHHHHHHHHhhhhhhHHHHHHhh
Q 003256 337 IHVGQQIDIYSINNWRAFAALELIIMAAYIGKVVA----SILATTCF------RTSFRNALLFSCFVNIKGVSELVTFLR 406 (836)
Q Consensus 337 ~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~----~~l~~~~~------~~~~real~lg~~m~~rG~v~l~~~~~ 406 (836)
+..|+++|...+..... .....+++..+++|++| +++..|+. |++|+|...+|++++.+++++++++++
T Consensus 270 anaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~l 348 (388)
T 1zcd_A 270 ANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASL 348 (388)
T ss_dssp HHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHH
T ss_pred HhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999853321111 11223444558899988 55555555 999999999999999999999999999
Q ss_pred hhhccc--cchhhHHHHHHHHHHHHHhHHHHHHHhc
Q 003256 407 WRQREL--IDVQTYSVLVLTNLAVTAIVTPLISVYY 440 (836)
Q Consensus 407 ~~~~~i--i~~~~~~~~vl~~lv~t~i~~plv~~l~ 440 (836)
+++.+. +.++.+..+++++++++++.+.++++.+
T Consensus 349 af~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 349 AFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred hccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998876 3567788888888887776666666544
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.85 E-value=3.7e-20 Score=199.19 Aligned_cols=255 Identities=11% Similarity=0.055 Sum_probs=178.1
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND 542 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 542 (836)
-|||+|++.+++....++.+..++... +..++++|+++ | +. .....++..+.+ .. .
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~------~-----~~-----~~~~l~~~~~~~---~~---~ 63 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVT--QSHLHLLVCEK------R-----RD-----HSAALNDLAQEL---RE---E 63 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHH--CCEEEEEEECS------S-----SC-----CHHHHHHHHHHH---HH---T
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhc--CCeEEEEEeeC------c-----HH-----HHHHHHHHHHHH---hh---C
Confidence 489999999999999999988887543 56899999986 1 10 111122333322 22 3
Q ss_pred ceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCC
Q 003256 543 AVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSA 622 (836)
Q Consensus 543 ~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~ 622 (836)
++.++..... .++.++.|++.|++.++||||||+|++++. ++..+|++.++|++++||||.+ +..+..
T Consensus 64 ~~~~~~~~~~--~g~~~~~i~~~a~~~~~dliV~G~~~~~~~---~~~~~gs~~~~vl~~~~~PVlv-v~~~~~------ 131 (290)
T 3mt0_A 64 GYSVSTNQAW--KDSLHQTIIAEQQAEGCGLIIKQHFPDNPL---KKAILTPDDWKLLRFAPCPVLM-TKTARP------ 131 (290)
T ss_dssp TCCEEEEEEC--SSSHHHHHHHHHHHHTCSEEEEECCCSCTT---STTSCCHHHHHHHHHCSSCEEE-ECCCSC------
T ss_pred CCeEEEEEEe--CCCHHHHHHHHHHhcCCCEEEEecccCCch---hhcccCHHHHHHHhcCCCCEEE-ecCCCC------
Confidence 4666655543 357899999999999999999999987544 3347999999999999999865 332222
Q ss_pred CCCCcccEEEEEccCCcc-------hHHHHHHHHHhhcCCCeEEEEEEEeecCCcc-------cchhhhhhHHHHHHHHH
Q 003256 623 KPANFCYNVAVFFIGGPD-------DREAMALVSHMSSNPGVRITLSRIYLEENLV-------EEEDDKCLDEVVMNDFM 688 (836)
Q Consensus 623 ~~~~~~~~I~v~f~Gg~d-------dreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~-------~~~~e~~~d~~~l~~~~ 688 (836)
. ..++|+++++|++. ++.|+++|.++|+..+++++++|+.++.... ..+..++..++.++++.
T Consensus 132 --~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (290)
T 3mt0_A 132 --W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQ 208 (290)
T ss_dssp --S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHH
T ss_pred --C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHH
Confidence 1 36799999999998 8999999999999999999999998753211 01112333446677776
Q ss_pred hhcCCCCCEEEEEEEcCChHHHHHHHHhc--ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcc
Q 003256 689 ASNFGNPNVVCRRIDANDSNQLVNAFRSL--VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMV 766 (836)
Q Consensus 689 ~~~~~~~~v~y~e~~v~~g~~~~~~i~~~--~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~ 766 (836)
++..- ..+.+. +..|. ..+.|.+. ..++||+|||++++. |+.+| -+|.+.+.+.. .+++
T Consensus 209 ~~~g~-~~~~~~---v~~g~-~~~~I~~~a~~~~~dLiVmG~~g~~------~~~~~----~~Gsv~~~vl~----~~~~ 269 (290)
T 3mt0_A 209 AEYGF-SDEQLH---IEEGP-ADVLIPRTAQKLDAVVTVIGTVART------GLSGA----LIGNTAEVVLD----TLES 269 (290)
T ss_dssp HHHTC-CTTTEE---EEESC-HHHHHHHHHHHHTCSEEEEECCSSC------CGGGC----CSCHHHHHHHT----TCSS
T ss_pred HHcCC-CcceEE---EeccC-HHHHHHHHHHhcCCCEEEECCCCCc------CCcce----ecchHHHHHHh----cCCC
Confidence 66521 122222 11232 22333322 256999999999887 77776 69999999995 5889
Q ss_pred eEEEEeecc
Q 003256 767 SVLVIQSVR 775 (836)
Q Consensus 767 SvLvvqq~~ 775 (836)
+||||+.+.
T Consensus 270 pVLvv~~~~ 278 (290)
T 3mt0_A 270 DVLVLKPDD 278 (290)
T ss_dssp EEEEECCHH
T ss_pred CEEEECCCC
Confidence 999998653
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.83 E-value=6e-20 Score=199.94 Aligned_cols=276 Identities=11% Similarity=0.015 Sum_probs=180.8
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccc-c-ccCchHHHHHHHHHHhhcC
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTK-A-MANSTDHIMRAVIKYAEGS 540 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~-~-~~~~~~~i~~af~~~~~~~ 540 (836)
-|||+|++.+++....++.+..++... ...++++|+++......+-.......+.. . .....++.++.+.....
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 83 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRN--GGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYL-- 83 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHH--CCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHc--CCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 489999999999999999888877543 56899999986321100000000000000 0 01112222222222111
Q ss_pred CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCC
Q 003256 541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSN 620 (836)
Q Consensus 541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~ 620 (836)
..++.++..... .++..+.|++.|++.++||||||+|++++. ++..+|++.++|++++||||.| +.++..
T Consensus 84 ~~~v~~~~~~~~--~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~---~~~~~Gs~~~~vl~~~~~PVlv-v~~~~~---- 153 (319)
T 3olq_A 84 EAGIQIDIKVIW--HNRPYEAIIEEVITDKHDLLIKMAHQHDKL---GSLIFTPLDWQLLRKCPAPVWM-VKDKEW---- 153 (319)
T ss_dssp HTTCCEEEEEEE--CSCHHHHHHHHHHHHTCSEEEEEEBCC--C---CSCBCCHHHHHHHHHCSSCEEE-EESSCC----
T ss_pred hcCCeEEEEEEe--cCChHHHHHHHHHhcCCCEEEEecCcCchh---hcccccccHHHHHhcCCCCEEE-ecCccc----
Confidence 235666666552 368999999999999999999999987544 3347999999999999999975 333321
Q ss_pred CCCCCCcccEEEEEccCCcc-------hHHHHHHHHHhhcCC--CeEEEEEEEeecCCcc-------c-----chhhhhh
Q 003256 621 SAKPANFCYNVAVFFIGGPD-------DREAMALVSHMSSNP--GVRITLSRIYLEENLV-------E-----EEDDKCL 679 (836)
Q Consensus 621 ~~~~~~~~~~I~v~f~Gg~d-------dreAL~~A~rmA~~~--~~~Ltvvrv~~~~~~~-------~-----~~~e~~~ 679 (836)
...++|+++++|+++ ++.|+++|.++|+.. +++++++|+.++.... . .+..++.
T Consensus 154 -----~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (319)
T 3olq_A 154 -----PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQ 228 (319)
T ss_dssp -----CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHH
T ss_pred -----ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHH
Confidence 136799999999995 599999999999887 9999999998753221 0 0111233
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhc
Q 003256 680 DEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLAS 758 (836)
Q Consensus 680 d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las 758 (836)
.++.++++.+++.. ..+.+. +..|.....+++.. ..++||+|||++++. |+.+| -+|.+.+.+..
T Consensus 229 ~~~~l~~~~~~~~~-~~~~~~---v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~------~~~~~----~~Gsv~~~vl~ 294 (319)
T 3olq_A 229 HLIAMKELRQKFSI-PEEKTH---VKEGLPEQVIPQVCEELNAGIVVLGILGRT------GLSAA----FLGNTAEQLID 294 (319)
T ss_dssp HHHHHHHHHHHTTC-CGGGEE---EEESCHHHHHHHHHHHTTEEEEEEECCSCC------STHHH----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CcccEE---EecCCcHHHHHHHHHHhCCCEEEEeccCcc------CCccc----cccHHHHHHHh
Confidence 45667777766522 222222 12232222333322 257899999999887 77766 69999999995
Q ss_pred cCCCCCcceEEEEeecc
Q 003256 759 ADFAEGMVSVLVIQSVR 775 (836)
Q Consensus 759 ~d~~~~~~SvLvvqq~~ 775 (836)
.++++||||+.+.
T Consensus 295 ----~~~~pVLvv~~~~ 307 (319)
T 3olq_A 295 ----HIKCDLLAIKPDG 307 (319)
T ss_dssp ----TCCSEEEEECCTT
T ss_pred ----hCCCCEEEECCCC
Confidence 5889999998764
No 4
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.82 E-value=2e-19 Score=195.18 Aligned_cols=277 Identities=15% Similarity=0.125 Sum_probs=178.6
Q ss_pred cceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccc-hhcccccccccccCchHHHHHHH-HHHhhc
Q 003256 462 ELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPV-VETYSTQKTKAMANSTDHIMRAV-IKYAEG 539 (836)
Q Consensus 462 elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~-~~~~~~~~~~~~~~~~~~i~~af-~~~~~~ 539 (836)
.-+||+|++.+++...+++.+..++... ...++++|+++......+. ....+..+. .....++.++.+ +.+++.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 94 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELR--KIPLTLVHAVSPEVATWLEVPLPPGVLRW--QQDHGRHLIDDALKVVEQA 94 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHH--TCCEEEEEECCCCCCCTTCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhc--CCcEEEEEEecCcccccccCCCCchhhHH--HHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999887777433 4689999998732111010 000000000 011122333222 222221
Q ss_pred C--CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCC
Q 003256 540 S--NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNN 617 (836)
Q Consensus 540 ~--~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~ 617 (836)
. ..++.++..+. .++..+.|++.|+ ++||||||.|++++. .+..+|++.++|++++||||.|+ ......
T Consensus 95 ~~~~~~~~~~~~~~---~g~~~~~I~~~a~--~~DliV~G~~g~~~~---~~~~~Gs~~~~vl~~~~~PVlvv-~~~~~~ 165 (309)
T 3cis_A 95 SLRAGPPTVHSEIV---PAAAVPTLVDMSK--DAVLMVVGCLGSGRW---PGRLLGSVSSGLLRHAHCPVVII-HDEDSV 165 (309)
T ss_dssp CSSSCCSCEEEEEE---SSCHHHHHHHHGG--GEEEEEEESSCTTCC---TTCCSCHHHHHHHHHCSSCEEEE-CTTCCC
T ss_pred cccCCCceEEEEEe---cCCHHHHHHHHhc--CCCEEEECCCCCccc---cccccCcHHHHHHHhCCCCEEEE-cCCccc
Confidence 0 11456665544 3689999999996 899999999987554 33479999999999999999653 332210
Q ss_pred CCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc---cc--hhhhhhHHHHHHHHHhhcC
Q 003256 618 CSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV---EE--EDDKCLDEVVMNDFMASNF 692 (836)
Q Consensus 618 ~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~---~~--~~e~~~d~~~l~~~~~~~~ 692 (836)
. .....++|+++++|++.++.|+++|.++|+..+++++++|+.++.... .. +..++..++.+++......
T Consensus 166 -~----~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (309)
T 3cis_A 166 -M----PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQ 240 (309)
T ss_dssp -S----CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHH
T ss_pred -C----CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 0 012357999999999999999999999999999999999998753211 00 1112223344554443321
Q ss_pred ---CCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEE
Q 003256 693 ---GNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVL 769 (836)
Q Consensus 693 ---~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvL 769 (836)
.+-.+.+. +..|. ..+.|.+..+++||+|||++++. ++.+| -+|.+.+.+... ++++||
T Consensus 241 ~~~~~~~~~~~---~~~g~-~~~~I~~~a~~adliV~G~~~~~------~~~~~----l~Gsv~~~vl~~----~~~pVl 302 (309)
T 3cis_A 241 ERYPNVAITRV---VVRDQ-PARQLVQRSEEAQLVVVGSRGRG------GYAGM----LVGSVGETVAQL----ARTPVI 302 (309)
T ss_dssp HHCTTSCEEEE---EESSC-HHHHHHHHHTTCSEEEEESSCSS------CCTTC----SSCHHHHHHHHH----CSSCEE
T ss_pred hhCCCCcEEEE---EEcCC-HHHHHHHhhCCCCEEEECCCCCC------Ccccc----ccCcHHHHHHhc----CCCCEE
Confidence 12234432 33443 33444444458999999999886 77776 699999999964 789999
Q ss_pred EEeec
Q 003256 770 VIQSV 774 (836)
Q Consensus 770 vvqq~ 774 (836)
||+.+
T Consensus 303 vv~~~ 307 (309)
T 3cis_A 303 VARES 307 (309)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 99753
No 5
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.81 E-value=5.1e-20 Score=198.38 Aligned_cols=265 Identities=11% Similarity=0.062 Sum_probs=176.6
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhccccccc-ccccCchHHHHHHHHHHhhcCC
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKT-KAMANSTDHIMRAVIKYAEGSN 541 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~-~~~~~~~~~i~~af~~~~~~~~ 541 (836)
-|||+|++.+++...+++.+..++.. ....++++|+++...... ........+. .......++.++.+.+..+.
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 97 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKV--GVEEIGVLFVINLTKLST-VSGGIDIDHYIDEMSEKAEEVLPEVAQKIEA-- 97 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHT--TCCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhh--cCCEEEEEEEecCccccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 48999999999999999988888744 367999999998653211 1000000000 00112233344444333222
Q ss_pred CceeEEE-EEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCC
Q 003256 542 DAVTIQP-FIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSN 620 (836)
Q Consensus 542 ~~v~v~~-~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~ 620 (836)
.++.++. .+. ..++..+.| .|+++++||||||.|++++. .+..+|++.++|++++||||.| +.++...
T Consensus 98 ~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~---~~~~~Gs~~~~vl~~~~~PVlv-v~~~~~~--- 166 (294)
T 3loq_A 98 AGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKF---KKILLGSVSEGVLHDSKVPVYI-FKHDMVV--- 166 (294)
T ss_dssp TTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHH---HHHHHCCHHHHHHHHCSSCEEE-ECCCTTT---
T ss_pred cCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCccc---cceeeccHHHHHHhcCCCCEEE-ecCcccc---
Confidence 3466655 222 135788999 99999999999999977443 3447899999999999999965 4433210
Q ss_pred CCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEE
Q 003256 621 SAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCR 700 (836)
Q Consensus 621 ~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~ 700 (836)
....++|+++++|++.+++|+++|.++|+..+++++++++.++.. .++.-++..+.+... +-.+.+.
T Consensus 167 ----~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------~~~~l~~~~~~l~~~---~~~~~~~ 233 (294)
T 3loq_A 167 ----NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------KTADLRVMEEVIGAE---GIEVHVH 233 (294)
T ss_dssp ----TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------CHHHHHHHHHHHHHT---TCCEEEE
T ss_pred ----CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------HHHHHHHHHHHHHHc---CCcEEEE
Confidence 123679999999999999999999999999999999999987533 111112222233221 2234432
Q ss_pred EEEcCChHHHHHHHHhc--ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeec
Q 003256 701 RIDANDSNQLVNAFRSL--VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSV 774 (836)
Q Consensus 701 e~~v~~g~~~~~~i~~~--~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~ 774 (836)
+..| +..+.|.+. ..++||+|||++++. ++.+| -+|...+.+... ++++||||++.
T Consensus 234 ---~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~~~----~~Gs~~~~vl~~----~~~pvLvv~~~ 291 (294)
T 3loq_A 234 ---IESG-TPHKAILAKREEINATTIFMGSRGAG------SVMTM----ILGSTSESVIRR----SPVPVFVCKRG 291 (294)
T ss_dssp ---EECS-CHHHHHHHHHHHTTCSEEEEECCCCS------CHHHH----HHHCHHHHHHHH----CSSCEEEECSC
T ss_pred ---EecC-CHHHHHHHHHHhcCcCEEEEeCCCCC------Cccce----eeCcHHHHHHhc----CCCCEEEECCC
Confidence 3344 333444433 257999999999876 66665 699999999964 88999999876
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.78 E-value=2.3e-18 Score=182.69 Aligned_cols=255 Identities=13% Similarity=0.112 Sum_probs=167.5
Q ss_pred eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCcc-chhc----ccc---cc--cccccCchHHHHHHH
Q 003256 464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAP-VVET----YST---QK--TKAMANSTDHIMRAV 533 (836)
Q Consensus 464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p-~~~~----~~~---~~--~~~~~~~~~~i~~af 533 (836)
|||+|++.+++...+++.+..++... +..++++|+++......+ .... .+. ++ ........++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKL--SAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHH--TCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999988887533 568999999875421000 0000 000 00 000111223344444
Q ss_pred HHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCC-CcccccchhhhHHHHHHhccCCcceEEEEc
Q 003256 534 IKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPN-EETEGRAACLHGLNNNVLGYAPCTVGIFVD 612 (836)
Q Consensus 534 ~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~-g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvd 612 (836)
.+..+. .++.++..... ++..+.|++. +.++||||||.|+++ +. .+..+||+.++|++++||||.| +.
T Consensus 80 ~~~~~~--~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~---~~~~~Gs~~~~v~~~a~~PVlv-v~ 148 (268)
T 3ab8_A 80 RQSALA--AGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGD---GFGGLGSTADRVLRASPVPVLL-AP 148 (268)
T ss_dssp HHHHHH--TTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCT---TCCSCCHHHHHHHHHCSSCEEE-EC
T ss_pred HHHHHh--CCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCccc---cccccchhHHHHHHhCCCCEEE-EC
Confidence 333222 24556655543 5799999999 999999999999875 44 3347999999999999999965 43
Q ss_pred CCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcC
Q 003256 613 KRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNF 692 (836)
Q Consensus 613 rg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~ 692 (836)
++.. ..++|+++++|++.++.|+++|.++|+..+++++++|+.++.+ + .++.++++.....
T Consensus 149 ~~~~----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~----~-----~~~~l~~~~~~l~ 209 (268)
T 3ab8_A 149 GEPV----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA----R-----AEAWALEAEAYLR 209 (268)
T ss_dssp SSCC----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH----H-----HHHHHHHHHHHHH
T ss_pred CCCC----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH----H-----HHHHHHHHHHHHH
Confidence 3221 2469999999999999999999999999999999999986421 1 1122333332221
Q ss_pred -CCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEE
Q 003256 693 -GNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVI 771 (836)
Q Consensus 693 -~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvv 771 (836)
.+-++.+. +..|. ..+.|.+..+++||++||+ |+.+| -+|.+.+.+... ++++||||
T Consensus 210 ~~~~~~~~~---~~~g~-~~~~i~~~a~~~dliV~G~----------~~~~~----~~Gs~~~~vl~~----~~~pvlvv 267 (268)
T 3ab8_A 210 DHGVEASAL---VLGGD-AADHLLRLQGPGDLLALGA----------PVRRL----VFGSTAERVIRN----AQGPVLTA 267 (268)
T ss_dssp HTTCCEEEE---EECSC-HHHHHHHHCCTTEEEEEEC----------CCSCC----SSCCHHHHHHHH----CSSCEEEE
T ss_pred HcCCceEEE---EeCCC-hHHHHHHHHHhCCEEEECC----------ccccc----EeccHHHHHHhc----CCCCEEEe
Confidence 12234432 33453 3344444444449999999 33343 689999999964 88999998
Q ss_pred e
Q 003256 772 Q 772 (836)
Q Consensus 772 q 772 (836)
+
T Consensus 268 ~ 268 (268)
T 3ab8_A 268 R 268 (268)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.17 E-value=1e-10 Score=111.00 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=91.0
Q ss_pred ceeEEeecCCCC--hHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcC
Q 003256 463 LRILCGIHDEDH--ISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGS 540 (836)
Q Consensus 463 lriLvcv~~~~~--~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 540 (836)
-|||+|++.+++ ...+++.+..++.. ....++++|+++......+.......... ......++..+.++++.+..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 78 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARI--DDAEVHFLTVIPSLPYYASLGMAYTAELP-GMDELREGSETQLKEIAKKF 78 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHH--HTCEEEEEEEECC-----------------CHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHh--cCCeEEEEEEecCCcccccccccccchhh-hHHHHHHHHHHHHHHHHHHc
Confidence 389999999999 88888887777643 35689999999864321111000000000 01122345566666665543
Q ss_pred C-CceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256 541 N-DAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 541 ~-~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI 609 (836)
. ..+.++..... ++..+.|++.|++.++||||||.|+ ++. .+..+||+.++|++++||||.|
T Consensus 79 ~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~-~~~---~~~~~Gs~~~~v~~~~~~pVlv 141 (143)
T 3fdx_A 79 SIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHR-PDI---TTYLLGSNAAAVVRHAECSVLV 141 (143)
T ss_dssp CCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSC-TTC---CSCSSCHHHHHHHHHCSSEEEE
T ss_pred CCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCC-CCC---eeeeeccHHHHHHHhCCCCEEE
Confidence 2 23555655554 5899999999999999999999994 443 3347999999999999999865
No 8
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.15 E-value=1.1e-10 Score=111.31 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=92.7
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND 542 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 542 (836)
-|||+|++.+++...+++.+..++... +..++++|+++........................++.++.+.+..+ ..
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 81 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRH--QANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVA--TT 81 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT--TS
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHH--hc
Confidence 489999999999999999888877433 56899999998654321111000000000011223344444443322 23
Q ss_pred ce-eEEEEEEEcCCcchHHHHHH-HHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256 543 AV-TIQPFIMISQYETMHESICK-LVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 543 ~v-~v~~~t~vs~~~~m~~~I~~-~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI 609 (836)
++ .++..+.. ++..+.|++ .|++.++||||||.|++++. .+..+||+.++|++++||||.|
T Consensus 82 g~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~~---~~~~~Gs~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 82 SAPNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNSP---HRVAVGSTTSYVVDHAPCNVIV 144 (146)
T ss_dssp SCCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSCT---TTCSSCHHHHHHHHHCSSEEEE
T ss_pred CCcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCCc---ceEEEcchHHHHhccCCCCEEE
Confidence 45 56655554 479999999 99999999999999987554 3347999999999999999865
No 9
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.13 E-value=1.7e-10 Score=109.82 Aligned_cols=129 Identities=10% Similarity=0.045 Sum_probs=92.6
Q ss_pred cccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCccc----------chhhhhhHHHHHHHHHhhcCCC-C
Q 003256 627 FCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVE----------EEDDKCLDEVVMNDFMASNFGN-P 695 (836)
Q Consensus 627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~----------~~~e~~~d~~~l~~~~~~~~~~-~ 695 (836)
..++|+++++|+++++.|+++|.++|+..+++++++|+.++..... .+..++..++.++++.+..... -
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 83 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSA 83 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999999999999999999998633211 1122344556777777665332 1
Q ss_pred -CEEEEEEEcCChHHHHHHHH-hc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 696 -NVVCRRIDANDSNQLVNAFR-SL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 696 -~v~y~e~~v~~g~~~~~~i~-~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
.+.+. +..|....++++ .. ..++||+|||++++. ++.+| -+|...+.+... ++++||||+
T Consensus 84 ~~~~~~---~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~----~~~pVlvV~ 146 (146)
T 3s3t_A 84 PNLKTE---ISYGIPKHTIEDYAKQHPEIDLIVLGATGTN------SPHRV----AVGSTTSYVVDH----APCNVIVIR 146 (146)
T ss_dssp CCCEEE---EEEECHHHHHHHHHHHSTTCCEEEEESCCSS------CTTTC----SSCHHHHHHHHH----CSSEEEEEC
T ss_pred cceEEE---EecCChHHHHHHHHHhhcCCCEEEECCCCCC------CcceE----EEcchHHHHhcc----CCCCEEEeC
Confidence 33433 233433334444 22 367999999999876 67665 699999999964 789999985
No 10
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.11 E-value=4.7e-10 Score=108.94 Aligned_cols=138 Identities=14% Similarity=0.177 Sum_probs=90.9
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccC----CCccch-----h-ccc---cccc-ccccCchHH
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVG----RAAPVV-----E-TYS---TQKT-KAMANSTDH 528 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~----r~~p~~-----~-~~~---~~~~-~~~~~~~~~ 528 (836)
-|||+|++.+++...+++.+..++... ...++++|+++... ...+.. . ..+ ..+. .......++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLK--AEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSS--CCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 489999999999999999998888543 67999999998540 000110 0 110 0000 001112233
Q ss_pred HHHHHHHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceE
Q 003256 529 IMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVG 608 (836)
Q Consensus 529 i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVg 608 (836)
.++.+.+..+. .++.++..+.. ++.++.|++.|++.++||||||.|++++. .+..+||+.++|++++||||.
T Consensus 84 ~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~---~~~~~GSv~~~vl~~~~~pVl 155 (162)
T 1mjh_A 84 KMENIKKELED--VGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNL---KEILLGSVTENVIKKSNKPVL 155 (162)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCC---TTCSSCHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHH--cCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCc---cceEecchHHHHHHhCCCCEE
Confidence 33333222121 34666655443 58999999999999999999999988554 334799999999999999997
Q ss_pred EE
Q 003256 609 IF 610 (836)
Q Consensus 609 Il 610 (836)
|+
T Consensus 156 vv 157 (162)
T 1mjh_A 156 VV 157 (162)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 11
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.10 E-value=9.3e-11 Score=111.72 Aligned_cols=136 Identities=12% Similarity=0.124 Sum_probs=90.6
Q ss_pred eeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccch--hccccccc-cc-ccCchHHHHHHHHHHhhc
Q 003256 464 RILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVV--ETYSTQKT-KA-MANSTDHIMRAVIKYAEG 539 (836)
Q Consensus 464 riLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~--~~~~~~~~-~~-~~~~~~~i~~af~~~~~~ 539 (836)
|||+|++.+++...+++.+..++... +..++++|+++......... ......+. .. .....++.++.+.+..+.
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQLT--GAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHHH--CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888777533 56899999987542000000 00000000 00 112234444444443332
Q ss_pred CCCceeE---EEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256 540 SNDAVTI---QPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 540 ~~~~v~v---~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI 609 (836)
.++.+ +..... ++..+.|++.|++.++||||||.|++++.. +..+||+.++|++++||||.|
T Consensus 82 --~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~---~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 82 --LGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDK---SLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp --TTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCS---CCCCCHHHHHHHHHCSSCEEE
T ss_pred --cCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCcccc---ceeeccHHHHHHhhCCCCEEE
Confidence 24444 544443 589999999999999999999999885543 347999999999999999865
No 12
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.10 E-value=1.9e-10 Score=108.46 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=86.8
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcCCC
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSND 542 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 542 (836)
-|||+|++.+++...+++.+..++... ...++++|+++.... +. .....++. .....++..+.++++.+. .
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~--~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~--~ 73 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAH--GARLIVVHAYEPVPD--YL-GEPFFEEA--LRRRLERAEGVLEEARAL--T 73 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEECC-------------------CHHHHHHHHHHHHHHHH--H
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCCCc--cc-cccchHHH--HHHHHHHHHHHHHHHHHH--c
Confidence 389999999999999998888777433 568999999873211 11 00000000 011112333344444332 2
Q ss_pred ce-eEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256 543 AV-TIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 543 ~v-~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI 609 (836)
++ .++..+.. ++..+.|++.|++.++||||||.|++++. .+..+||+.++|++++||||.|
T Consensus 74 g~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~---~~~~~Gs~~~~vl~~~~~pVlv 135 (137)
T 2z08_A 74 GVPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGAL---GSLFLGSQSQRVVAEAPCPVLL 135 (137)
T ss_dssp CCCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCC---SCSSSCHHHHHHHHHCSSCEEE
T ss_pred CCCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchh---hhhhhccHHHHHHhcCCCCEEE
Confidence 34 44444432 58999999999999999999999987554 3347999999999999999865
No 13
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.08 E-value=2.4e-10 Score=109.47 Aligned_cols=137 Identities=14% Similarity=0.151 Sum_probs=83.3
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhccccccccc-ccCchHHHHHHHHHHhhcCC
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKA-MANSTDHIMRAVIKYAEGSN 541 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~ 541 (836)
-|||+|++.+++...+++.+..++... ...++++|+++......+............ .....++..+.++++.+..
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 83 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQI--GARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL- 83 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 489999999999999999988887543 568999999875321100000000000000 1111233344444443322
Q ss_pred Ccee-EEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 542 DAVT-IQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 542 ~~v~-v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
++. ++..... ++..+.|++.|++.++||||||.|++++. . ..+||+.++|++++||||.|+
T Consensus 84 -~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~---~-~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 84 -GIDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGL---A-LLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp -TCCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC------------CCCHHHHHHHHCSSEEEEE
T ss_pred -CCCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCc---C-eEecchHHHHHHhCCCCEEEE
Confidence 222 2333332 58999999999999999999999987554 3 489999999999999999764
No 14
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.07 E-value=2.7e-10 Score=110.37 Aligned_cols=130 Identities=10% Similarity=0.127 Sum_probs=90.7
Q ss_pred cceeEEeecC-CCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhcC
Q 003256 462 ELRILCGIHD-EDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGS 540 (836)
Q Consensus 462 elriLvcv~~-~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 540 (836)
--|||+|++. ++....+++.+..++... ...++++|+++..... . +. .....++.++.+.+..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~-----~-~~-----~~~~~~~~l~~~~~~~~~- 89 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLR--GVPVYVVHSLPGGGRT-----K-DE-----DIIEAKETLSWAVSIIRK- 89 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHH--TCCEEEEEEECCSTTS-----C-HH-----HHHHHHHHHHHHHHHHHH-
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEcCCCcc-----c-HH-----HHHHHHHHHHHHHHHHHh-
Confidence 4589999999 999999999988887543 4588999998754211 0 10 111223333333333222
Q ss_pred CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
.++.++..+.+ ..++..+.|++.|++.++||||||.|++++. .+..+||+.++|++++||||.|+
T Consensus 90 -~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~---~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 90 -EGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPT---GKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp -TTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTT---SCEECCHHHHHHHHHCSSCEEEE
T ss_pred -cCCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCC---CCEEeccHHHHHHHhCCCCEEEe
Confidence 23444544444 2368999999999999999999999987554 33479999999999999998653
No 15
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.07 E-value=5.7e-10 Score=109.32 Aligned_cols=138 Identities=11% Similarity=0.057 Sum_probs=89.1
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccc-hhc-------cccccc-ccccCchHHHHHHH
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPV-VET-------YSTQKT-KAMANSTDHIMRAV 533 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~-~~~-------~~~~~~-~~~~~~~~~i~~af 533 (836)
-|||+|++.+++...+++.+..++... ...++++|+++........ -.. .+..+. .......++.++.+
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKME--VGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCSC--CSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999998888543 5789999998753211000 000 000000 00111122333333
Q ss_pred HHHhhcCCCceeEEE--EEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 534 IKYAEGSNDAVTIQP--FIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 534 ~~~~~~~~~~v~v~~--~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
.+..+. .++.++. .+.. .+.++.|++.|++.++||||||.|++++. .+..+|++.++|++++||||.|+
T Consensus 84 ~~~~~~--~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~---~~~~~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 84 AEEVKR--AFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSL---SHEFLGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp HHHHHH--HTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC-----TTCCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHH--cCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCcc---ccceechHHHHHHHhCCCCEEEE
Confidence 222111 1344554 3332 58999999999999999999999987554 33479999999999999999764
No 16
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.06 E-value=4.7e-10 Score=109.59 Aligned_cols=136 Identities=12% Similarity=0.057 Sum_probs=89.9
Q ss_pred cceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEE--EEeeccCCCccchh-cccccccccccCchHHHHHHHHHHhh
Q 003256 462 ELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVV--HLVELVGRAAPVVE-TYSTQKTKAMANSTDHIMRAVIKYAE 538 (836)
Q Consensus 462 elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~l--hlvel~~r~~p~~~-~~~~~~~~~~~~~~~~i~~af~~~~~ 538 (836)
.-|||+|++.+++...+++.+..++. . ...++++ |+++......+... ..+..+. .....++.++.+.+..+
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~--~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 91 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-A--DAKLIIASAYLPQHEDARAADILKDESYKVT--GTAPIYEILHDAKERAH 91 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-T--TSEEEEEEECCC----------------------CCTHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-C--CCEEEEEEeeeccCcccccccccccHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 45899999999999999999888875 3 5789999 88764321011100 0000000 12234445544444322
Q ss_pred cCCCcee-EEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEE
Q 003256 539 GSNDAVT-IQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIF 610 (836)
Q Consensus 539 ~~~~~v~-v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIl 610 (836)
. .++. ++..+.. .+..+.|++.|++.++||||||.|++++. .+..+||+.++|++++||||.|+
T Consensus 92 ~--~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~---~~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 92 N--AGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTI---AGRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp T--TTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSH---HHHHTBBHHHHHHHHTTCEEEEE
T ss_pred H--cCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcc---cceeeccHHHHHHHhCCCCEEEE
Confidence 2 3455 6655443 68999999999999999999999988554 44589999999999999999764
No 17
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.05 E-value=5.8e-10 Score=105.10 Aligned_cols=125 Identities=13% Similarity=0.074 Sum_probs=88.7
Q ss_pred cEEEEEccCCcchHHHHHHHHHhh-cCCCeEEEEEEEeecCCccc---------chhhh-hhHHHHHHHHHhhcCC-CCC
Q 003256 629 YNVAVFFIGGPDDREAMALVSHMS-SNPGVRITLSRIYLEENLVE---------EEDDK-CLDEVVMNDFMASNFG-NPN 696 (836)
Q Consensus 629 ~~I~v~f~Gg~ddreAL~~A~rmA-~~~~~~Ltvvrv~~~~~~~~---------~~~e~-~~d~~~l~~~~~~~~~-~~~ 696 (836)
++|+++++|++.++.|+++|.++| +..+++++++|+.++..... .+..+ +..++.++++.+.... +-+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 81 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN 81 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 689999999999999999999999 99999999999998643211 01112 3445667777665432 223
Q ss_pred EEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 697 VVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 697 v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
+.+. +..|.....+++... ++||+|||++++. ++.+| - |.+.+.+... ++++||||+
T Consensus 82 ~~~~---v~~g~~~~~I~~~a~-~~dliV~G~~~~~------~~~~~----~-Gs~~~~vl~~----~~~pVlvv~ 138 (138)
T 3idf_A 82 PFVV---IKEGEPVEMVLEEAK-DYNLLIIGSSENS------FLNKI----F-ASHQDDFIQK----APIPVLIVK 138 (138)
T ss_dssp CEEE---EEESCHHHHHHHHHT-TCSEEEEECCTTS------TTSSC----C-CCTTCHHHHH----CSSCEEEEC
T ss_pred eEEE---EecCChHHHHHHHHh-cCCEEEEeCCCcc------hHHHH----h-CcHHHHHHhc----CCCCEEEeC
Confidence 3322 333433334444434 9999999999876 66665 4 9999999964 789999984
No 18
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.03 E-value=1e-09 Score=108.18 Aligned_cols=142 Identities=8% Similarity=0.075 Sum_probs=84.6
Q ss_pred ceeEEeecCCC---------ChHHHHHHHHHhCCCC-CCCceEEEEEEeeccCCCcc----chh-ccccccccc-ccCch
Q 003256 463 LRILCGIHDED---------HISGIIHLIKASNPTE-MNPICAYVVHLVELVGRAAP----VVE-TYSTQKTKA-MANST 526 (836)
Q Consensus 463 lriLvcv~~~~---------~~~~li~L~~~~~~~~-~s~~~v~~lhlvel~~r~~p----~~~-~~~~~~~~~-~~~~~ 526 (836)
-|||+|++.++ ....+++.+..+.... .....++++|+++....... ... ..+.++... .....
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 85 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence 48999999999 8888999988765322 24678999999864321100 000 000000000 00112
Q ss_pred HHHHHHHHHHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcc
Q 003256 527 DHIMRAVIKYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCT 606 (836)
Q Consensus 527 ~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCs 606 (836)
++.++.+.+..+. .++.++..+.. ++..+.|++.|++.++||||||.|++++. .+..+||+.++|++++|||
T Consensus 86 ~~~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~---~~~~~Gsva~~vl~~a~~p 157 (175)
T 2gm3_A 86 LHLLEFFVNKCHE--IGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRF---QKVFVGTVSAFCVKHAECP 157 (175)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC-----------CHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHH--CCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChh---hhhhcCchHHHHHhCCCCC
Confidence 2333333322111 24556555443 57999999999999999999999988554 3347999999999999999
Q ss_pred eEEEEc
Q 003256 607 VGIFVD 612 (836)
Q Consensus 607 VgIlvd 612 (836)
|.|+..
T Consensus 158 Vlvv~~ 163 (175)
T 2gm3_A 158 VMTIKR 163 (175)
T ss_dssp EEEEEC
T ss_pred EEEEcC
Confidence 976543
No 19
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.03 E-value=5.5e-10 Score=105.31 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=89.7
Q ss_pred eeEEeecCCCChHHHHHHHHHhC-CCCCCCceEEEEEEeeccCCCccc-hhccccccccccc-CchHHHHHHHHHHhhcC
Q 003256 464 RILCGIHDEDHISGIIHLIKASN-PTEMNPICAYVVHLVELVGRAAPV-VETYSTQKTKAMA-NSTDHIMRAVIKYAEGS 540 (836)
Q Consensus 464 riLvcv~~~~~~~~li~L~~~~~-~~~~s~~~v~~lhlvel~~r~~p~-~~~~~~~~~~~~~-~~~~~i~~af~~~~~~~ 540 (836)
|||+|++.+++...+++.+..++ ... ...++++|+++........ ....+..+ ... ...++.++.+.+..+
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~-- 76 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKDA--DCTLTLIHVKPEFMLYGEAVLAAYDEIE--MKEEEKAKLLTQKFSTFFT-- 76 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTCT--TEEEEEEEEECCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccCC--CCEEEEEEEecCCCcccccccCcHHHHH--HHHHHHHHHHHHHHHHHHH--
Confidence 79999999999999999998887 443 5799999999865322110 00000000 011 223344444444333
Q ss_pred CCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256 541 NDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 541 ~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI 609 (836)
..++.++..... ++..+.|++.|+ ++||||||.|++++.. +.. ||+.++|++++||||.|
T Consensus 77 ~~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~~---~~~-Gs~~~~vl~~~~~pVlv 136 (138)
T 3idf_A 77 EKGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFLN---KIF-ASHQDDFIQKAPIPVLI 136 (138)
T ss_dssp TTTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTTS---SCC-CCTTCHHHHHCSSCEEE
T ss_pred HCCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchHH---HHh-CcHHHHHHhcCCCCEEE
Confidence 235666655554 579999999999 9999999999885542 235 99999999999999865
No 20
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.02 E-value=3.2e-10 Score=109.44 Aligned_cols=136 Identities=12% Similarity=0.076 Sum_probs=89.6
Q ss_pred cceeEEeec--CCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhc
Q 003256 462 ELRILCGIH--DEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEG 539 (836)
Q Consensus 462 elriLvcv~--~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 539 (836)
--|||+|++ .+++....++.+..++... +..++++|+++............+..+. .....++.++.+.+..+.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 90 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDY--DVPLGICSVLESEDINIFDSLTPSKIQA--KRKHVEDVVAEYVQLAEQ 90 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHH--TCCEEEEEEECCCCTTCCCSSHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEeCCCccccccCCHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 358999999 9999999999887777543 5689999999865321100000000000 112223334333332221
Q ss_pred CCCce-eEEEEEEEcCCcchHHHHHHH-HHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256 540 SNDAV-TIQPFIMISQYETMHESICKL-VKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 540 ~~~~v-~v~~~t~vs~~~~m~~~I~~~-A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI 609 (836)
.++ .++..... .++..+.|++. |++.++||||||.|++++. + . .+||+.++|++++||||.|
T Consensus 91 --~g~~~~~~~v~~--~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~-~--~-~~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 91 --RGVNQVEPLVYE--GGDVDDVILEQVIPEFKPDLLVTGADTEFPH-S--K-IAGAIGPRLARKAPISVIV 154 (156)
T ss_dssp --HTCSSEEEEEEE--CSCHHHHHHHTHHHHHCCSEEEEETTCCCTT-S--S-SCSCHHHHHHHHCSSEEEE
T ss_pred --cCCCceEEEEEe--CCCHHHHHHHHHHHhcCCCEEEECCCCCCcc-c--e-eecchHHHHHHhCCCCEEE
Confidence 234 35555544 25899999999 9999999999999988554 2 2 7999999999999999865
No 21
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.02 E-value=1.1e-09 Score=106.30 Aligned_cols=130 Identities=12% Similarity=0.006 Sum_probs=89.7
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecC-----C--cc--------cc---------hhhhhhHHHH
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEE-----N--LV--------EE---------EDDKCLDEVV 683 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~-----~--~~--------~~---------~~e~~~d~~~ 683 (836)
.++|+++++|+++++.|+++|.++|+..+++++++|+.++. . .. .. +..++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998753 1 00 11 0112234456
Q ss_pred HHHHHhhcCC-CCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCC
Q 003256 684 MNDFMASNFG-NPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADF 761 (836)
Q Consensus 684 l~~~~~~~~~-~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~ 761 (836)
++++.+.... +-++.+. +..|.....+++.. ..++||||||++++. ++.+| -+|.+.+.+...
T Consensus 85 l~~~~~~~~~~g~~~~~~---v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~------~~~~~----~~GSv~~~vl~~-- 149 (162)
T 1mjh_A 85 MENIKKELEDVGFKVKDI---IVVGIPHEEIVKIAEDEGVDIIIMGSHGKT------NLKEI----LLGSVTENVIKK-- 149 (162)
T ss_dssp HHHHHHHHHHTTCEEEEE---EEEECHHHHHHHHHHHTTCSEEEEESCCSS------CCTTC----SSCHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCceEEE---EcCCCHHHHHHHHHHHcCCCEEEEcCCCCC------Cccce----EecchHHHHHHh--
Confidence 7776655422 1233322 33343222333332 257999999999876 77666 699999999974
Q ss_pred CCCcceEEEEeec
Q 003256 762 AEGMVSVLVIQSV 774 (836)
Q Consensus 762 ~~~~~SvLvvqq~ 774 (836)
++++||||+..
T Consensus 150 --~~~pVlvv~~~ 160 (162)
T 1mjh_A 150 --SNKPVLVVKRK 160 (162)
T ss_dssp --CCSCEEEECCC
T ss_pred --CCCCEEEEeCC
Confidence 78999999753
No 22
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.02 E-value=5.8e-10 Score=106.13 Aligned_cols=127 Identities=14% Similarity=0.127 Sum_probs=88.2
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCC----------ccc----chhhhhhHHHHHHHHHhhcCC
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEEN----------LVE----EEDDKCLDEVVMNDFMASNFG 693 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~----------~~~----~~~e~~~d~~~l~~~~~~~~~ 693 (836)
.++|+++++|++.++.|+++|.++|++.+++++++|+.++.. ... .+..++..++.++++.+....
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999987532 000 122234445666666654322
Q ss_pred -CCCE---EEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceE
Q 003256 694 -NPNV---VCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSV 768 (836)
Q Consensus 694 -~~~v---~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~Sv 768 (836)
+-.+ .+. +..|.....+++.. ..++||+|||++++. ++.+| -+|...+.+... ++++|
T Consensus 82 ~g~~~~~~~~~---~~~g~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~----~~~pV 144 (147)
T 3hgm_A 82 LGVPADKVRAF---VKGGRPSRTIVRFARKRECDLVVIGAQGTN------GDKSL----LLGSVAQRVAGS----AHCPV 144 (147)
T ss_dssp TTCCGGGEEEE---EEESCHHHHHHHHHHHTTCSEEEECSSCTT------CCSCC----CCCHHHHHHHHH----CSSCE
T ss_pred cCCCccceEEE---EecCCHHHHHHHHHHHhCCCEEEEeCCCCc------cccce----eeccHHHHHHhh----CCCCE
Confidence 2122 422 22333222333332 257999999999876 66665 699999999964 78999
Q ss_pred EEE
Q 003256 769 LVI 771 (836)
Q Consensus 769 Lvv 771 (836)
|||
T Consensus 145 lvV 147 (147)
T 3hgm_A 145 LVV 147 (147)
T ss_dssp EEC
T ss_pred EEC
Confidence 986
No 23
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.01 E-value=9.1e-10 Score=103.79 Aligned_cols=126 Identities=13% Similarity=0.090 Sum_probs=86.8
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCc--c---c---chhhhhhHHHHHHHHHhhcCCCC-CEE
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL--V---E---EEDDKCLDEVVMNDFMASNFGNP-NVV 698 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~--~---~---~~~e~~~d~~~l~~~~~~~~~~~-~v~ 698 (836)
.++|+++++|+++++.|+++|.++|+..+++++++|+.++... . . .+..++..++.++++.++. +- ++.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~ 79 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALT--GVPKED 79 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHH--CCCGGG
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHc--CCCccE
Confidence 4699999999999999999999999999999999999874321 0 0 1112334456777776541 22 333
Q ss_pred EEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 699 CRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 699 y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
+.. ..|.....+++.. ..++||+|||++++. ++.++ -+|...+.+... ++++||||+
T Consensus 80 ~~~---~~g~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~----~~~pVlvv~ 137 (137)
T 2z08_A 80 ALL---LEGVPAEAILQAARAEKADLIVMGTRGLG------ALGSL----FLGSQSQRVVAE----APCPVLLVR 137 (137)
T ss_dssp EEE---EESSHHHHHHHHHHHTTCSEEEEESSCTT------CCSCS----SSCHHHHHHHHH----CSSCEEEEC
T ss_pred EEE---EecCHHHHHHHHHHHcCCCEEEECCCCCc------hhhhh----hhccHHHHHHhc----CCCCEEEeC
Confidence 332 2232222333322 257999999999876 66655 699999999964 789999984
No 24
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.01 E-value=6.1e-10 Score=107.86 Aligned_cols=130 Identities=8% Similarity=0.012 Sum_probs=92.1
Q ss_pred cccEEEEEccC-CcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCC-CCCEEEEEEEc
Q 003256 627 FCYNVAVFFIG-GPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFG-NPNVVCRRIDA 704 (836)
Q Consensus 627 ~~~~I~v~f~G-g~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~-~~~v~y~e~~v 704 (836)
.+++|+|+++| ++.++.|+++|.++|+..+++|+++|+.++..... +..++..++.++++.+.... +..+... ..+
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~~~~~~-~~v 100 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK-DEDIIEAKETLSWAVSIIRKEGAEGEEH-LLV 100 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC-HHHHHHHHHHHHHHHHHHHHTTCCEEEE-EEE
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc-HHHHHHHHHHHHHHHHHHHhcCCCceEE-EEe
Confidence 46799999999 99999999999999999999999999997543221 22333445566666554422 2234422 224
Q ss_pred CChHHHHHHHHhcc-cCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 705 NDSNQLVNAFRSLV-SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 705 ~~g~~~~~~i~~~~-~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
..|....++++... .++||+|||++++. ++.+| -+|.+.+.+... ++++||||+
T Consensus 101 ~~G~~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSv~~~vl~~----a~~PVLvVr 155 (155)
T 3dlo_A 101 RGKEPPDDIVDFADEVDAIAIVIGIRKRS------PTGKL----IFGSVARDVILK----ANKPVICIK 155 (155)
T ss_dssp SSSCHHHHHHHHHHHTTCSEEEEECCEEC------TTSCE----ECCHHHHHHHHH----CSSCEEEEC
T ss_pred cCCCHHHHHHHHHHHcCCCEEEECCCCCC------CCCCE----EeccHHHHHHHh----CCCCEEEeC
Confidence 44443334444332 47999999999875 66665 699999999964 889999985
No 25
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.99 E-value=1.4e-09 Score=103.99 Aligned_cols=128 Identities=12% Similarity=0.072 Sum_probs=83.9
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCc--------------ccchhhhhhHHHHHHHHHhhcCC
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENL--------------VEEEDDKCLDEVVMNDFMASNFG 693 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~--------------~~~~~e~~~d~~~l~~~~~~~~~ 693 (836)
.++|+|+++|++.++.|+++|.++|+..+++|+++|+.++... +..+..++..++.++++.++...
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6799999999999999999999999999999999999875221 01122234455677777766521
Q ss_pred CCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 694 NPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 694 ~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
..+.+. +..|.....+++.. ..++||+|||++++. ++. | -+|.+.+.+... ++++||||+
T Consensus 86 -~~~~~~---~~~g~~~~~I~~~a~~~~~dliV~G~~~~~------~~~-~----~~Gs~~~~vl~~----~~~pVlvv~ 146 (150)
T 3tnj_A 86 -DPAHRW---LVWGEPREEIIRIAEQENVDLIVVGSHGRH------GLA-L----LLGSTANSVLHY----AKCDVLAVR 146 (150)
T ss_dssp -CGGGEE---EEESCHHHHHHHHHHHTTCSEEEEEEC-------------------CCCHHHHHHHH----CSSEEEEEE
T ss_pred -CcceEE---EecCCHHHHHHHHHHHcCCCEEEEecCCCC------CcC-e----EecchHHHHHHh----CCCCEEEEe
Confidence 212222 22332222333332 257999999999876 655 4 699999999964 789999998
Q ss_pred ec
Q 003256 773 SV 774 (836)
Q Consensus 773 q~ 774 (836)
..
T Consensus 147 ~~ 148 (150)
T 3tnj_A 147 LR 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 26
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.99 E-value=1.7e-09 Score=105.98 Aligned_cols=132 Identities=12% Similarity=-0.052 Sum_probs=88.8
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc----------------c-c--hhhhhhHHHHHHHHH
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV----------------E-E--EDDKCLDEVVMNDFM 688 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~----------------~-~--~~e~~~d~~~l~~~~ 688 (836)
.++|+++++|+++++.|+++|.++|+..+++|+++|+.++.... . + +..++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999998753210 0 0 112233445666666
Q ss_pred hhcCC-CCCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcc
Q 003256 689 ASNFG-NPNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMV 766 (836)
Q Consensus 689 ~~~~~-~~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~ 766 (836)
+.... +-++.+. ..+..|.....+++.. ..++||||||++++. ++.++ -+|.+.+.+... +++
T Consensus 85 ~~~~~~g~~~~~~-~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~------~~~~~----~~Gsv~~~vl~~----~~~ 149 (170)
T 2dum_A 85 EEVKRAFRAKNVR-TIIRFGIPWDEIVKVAEEENVSLIILPSRGKL------SLSHE----FLGSTVMRVLRK----TKK 149 (170)
T ss_dssp HHHHHHTTCSEEE-EEEEEECHHHHHHHHHHHTTCSEEEEESCCCC------C--TT----CCCHHHHHHHHH----CSS
T ss_pred HHHHHcCCceeee-eEEecCChHHHHHHHHHHcCCCEEEECCCCCC------ccccc----eechHHHHHHHh----CCC
Confidence 54321 2234431 1122333222333322 257999999999876 66665 699999999964 789
Q ss_pred eEEEEeec
Q 003256 767 SVLVIQSV 774 (836)
Q Consensus 767 SvLvvqq~ 774 (836)
+||||+..
T Consensus 150 PVlvv~~~ 157 (170)
T 2dum_A 150 PVLIIKEV 157 (170)
T ss_dssp CEEEECCC
T ss_pred CEEEEccC
Confidence 99999865
No 27
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.97 E-value=2.2e-09 Score=101.62 Aligned_cols=126 Identities=11% Similarity=0.065 Sum_probs=84.0
Q ss_pred cEEEEEccCCcc--hHHHHHHHHHhhcCCCeEEEEEEEeecCCcc---------c---chhhhhhHHHHHHHHHhhcCCC
Q 003256 629 YNVAVFFIGGPD--DREAMALVSHMSSNPGVRITLSRIYLEENLV---------E---EEDDKCLDEVVMNDFMASNFGN 694 (836)
Q Consensus 629 ~~I~v~f~Gg~d--dreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~---------~---~~~e~~~d~~~l~~~~~~~~~~ 694 (836)
++|+++++|+++ ++.|+++|.++|+..+++++++|+.++.... . .+...+...+.++++..+....
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 589999999999 9999999999999999999999998753210 0 0111222234455555443211
Q ss_pred -CCEEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 695 -PNVVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 695 -~~v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
.++.+. +..|....++++.. ..++||+|||+++ . |+.+| -+|...+.+... ++++||||+
T Consensus 82 ~~~v~~~---~~~g~~~~~I~~~a~~~~~dliV~G~~~-~------~~~~~----~~Gs~~~~v~~~----~~~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMHFH---VAEGSPKDKILALAKSLPADLVIIASHR-P------DITTY----LLGSNAAAVVRH----AECSVLVVR 143 (143)
T ss_dssp GGGEEEE---EEESCHHHHHHHHHHHTTCSEEEEESSC-T------TCCSC----SSCHHHHHHHHH----CSSEEEEEC
T ss_pred CCceEEE---EEecChHHHHHHHHHHhCCCEEEEeCCC-C------CCeee----eeccHHHHHHHh----CCCCEEEeC
Confidence 234433 22332222333322 2579999999994 4 76665 699999999964 889999984
No 28
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.97 E-value=2.5e-09 Score=101.13 Aligned_cols=133 Identities=8% Similarity=0.038 Sum_probs=85.3
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeec-cCCCccchhcccccccccccCchHHHHHHHHHHhhcCC
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVEL-VGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEGSN 541 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel-~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 541 (836)
-|||+|++.+++...+++.+..++.. .+..++++|+++. +...... ......+. .....++..+.++++.+..
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~~~~~- 76 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKR--HDAKLSIIHVDVNFSDLYTGL-IDVNMSSM--QDRISTETQKALLDLAESV- 76 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHH--HTCEEEEEEEEECCGGGCCCC-EEHHHHHH--TTCCCCHHHHHHHHHHHHS-
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHh--cCCEEEEEEEecCchhhhccc-cccchHHH--HHHHHHHHHHHHHHHHHHc-
Confidence 37999999999999999988877743 2568999999842 2111010 00000000 0111223334444443322
Q ss_pred CceeE-EEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEE
Q 003256 542 DAVTI-QPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFV 611 (836)
Q Consensus 542 ~~v~v-~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlv 611 (836)
++.+ +.... .++..+.|++.|++.++||||||.| +++. .+ +||+.++|++++||||.|+-
T Consensus 77 -~~~~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~-~~~~---~~--lgs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 77 -DYPISEKLSG---SGDLGQVLSDAIEQYDVDLLVTGHH-QDFW---SK--LMSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp -SSCCCCEEEE---EECHHHHHHHHHHHTTCCEEEEEEC-CCCH---HH--HHHHHHHHHTTCCSEEEEEE
T ss_pred -CCCceEEEEe---cCCHHHHHHHHHHhcCCCEEEEeCC-Cchh---hh--hcchHHHHHhcCCCCEEEee
Confidence 2333 22232 2578999999999999999999999 7432 22 58999999999999997643
No 29
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.93 E-value=1.8e-09 Score=105.50 Aligned_cols=130 Identities=13% Similarity=0.119 Sum_probs=88.0
Q ss_pred cccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEE--EEeecCCc-c-----c---chhhhhhHHHHHHHHHhhcCCC-
Q 003256 627 FCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLS--RIYLEENL-V-----E---EEDDKCLDEVVMNDFMASNFGN- 694 (836)
Q Consensus 627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvv--rv~~~~~~-~-----~---~~~e~~~d~~~l~~~~~~~~~~- 694 (836)
..++|+|+++|++.++.|+++|.++|+ .+++++++ ++.++... . . .+..++..++.++++.+.....
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 94 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAG 94 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTT
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999999999999 99999999 88764221 0 0 0112334556777766554222
Q ss_pred CC-EEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 695 PN-VVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 695 ~~-v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
-. +.+. +..|....++++.. ..++||||||++++. ++.+| -+|.+.+.++.. ++++||||+
T Consensus 95 v~~v~~~---v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSva~~vl~~----a~~PVlvV~ 157 (163)
T 1tq8_A 95 AKNVEER---PIVGAPVDALVNLADEEKADLLVVGNVGLS------TIAGR----LLGSVPANVSRR----AKVDVLIVH 157 (163)
T ss_dssp CCEEEEE---EECSSHHHHHHHHHHHTTCSEEEEECCCCC------SHHHH----HTBBHHHHHHHH----TTCEEEEEC
T ss_pred CCeEEEE---EecCCHHHHHHHHHHhcCCCEEEECCCCCC------cccce----eeccHHHHHHHh----CCCCEEEEe
Confidence 23 4433 33343333333333 367999999999876 65554 699999999974 789999998
Q ss_pred ec
Q 003256 773 SV 774 (836)
Q Consensus 773 q~ 774 (836)
..
T Consensus 158 ~~ 159 (163)
T 1tq8_A 158 TT 159 (163)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 30
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.93 E-value=1.9e-09 Score=104.05 Aligned_cols=129 Identities=14% Similarity=0.163 Sum_probs=88.8
Q ss_pred cccEEEEEcc--CCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc------c--chhhhhhHHHHHHHHHhhcCC-CC
Q 003256 627 FCYNVAVFFI--GGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV------E--EEDDKCLDEVVMNDFMASNFG-NP 695 (836)
Q Consensus 627 ~~~~I~v~f~--Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~------~--~~~e~~~d~~~l~~~~~~~~~-~~ 695 (836)
..++|+++++ |+++++.|+++|.++|+..+++++++|+.++.... . .+..++..++.++++.+.... +-
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 93 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGV 93 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4689999999 99999999999999999999999999999763211 0 112233445666666554322 11
Q ss_pred -CEEEEEEEcCChHHHHHHHHh-c-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEe
Q 003256 696 -NVVCRRIDANDSNQLVNAFRS-L-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQ 772 (836)
Q Consensus 696 -~v~y~e~~v~~g~~~~~~i~~-~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvq 772 (836)
.+.+... .+|....++++. . ..++||||||++++. ++. + -+|.+.+.+... ++++||||+
T Consensus 94 ~~~~~~v~--~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~------~~~-~----~~Gs~~~~vl~~----a~~PVlvV~ 156 (156)
T 3fg9_A 94 NQVEPLVY--EGGDVDDVILEQVIPEFKPDLLVTGADTEF------PHS-K----IAGAIGPRLARK----APISVIVVR 156 (156)
T ss_dssp SSEEEEEE--ECSCHHHHHHHTHHHHHCCSEEEEETTCCC------TTS-S----SCSCHHHHHHHH----CSSEEEEEC
T ss_pred CceEEEEE--eCCCHHHHHHHHHHHhcCCCEEEECCCCCC------ccc-e----eecchHHHHHHh----CCCCEEEeC
Confidence 3443322 214333344443 2 377999999999876 553 2 599999999964 889999985
No 31
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.76 E-value=3.3e-08 Score=97.19 Aligned_cols=132 Identities=12% Similarity=0.098 Sum_probs=80.5
Q ss_pred cccEEEEEccCCc---------chHHHHHHHHHhh-cC--CCeEEEEEEEeecCCc---------c-cch------hhhh
Q 003256 627 FCYNVAVFFIGGP---------DDREAMALVSHMS-SN--PGVRITLSRIYLEENL---------V-EEE------DDKC 678 (836)
Q Consensus 627 ~~~~I~v~f~Gg~---------ddreAL~~A~rmA-~~--~~~~Ltvvrv~~~~~~---------~-~~~------~e~~ 678 (836)
..++|+|+++|++ .++.|+++|.+++ +. .+++|+++|+.++... . .++ ..++
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 3679999999999 8999999999986 54 6999999999853211 0 000 1112
Q ss_pred hHHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcc-cCCcEEEEcccCCCCccccccCCCCCCCCccccccchhh
Q 003256 679 LDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLV-SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLA 757 (836)
Q Consensus 679 ~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~-~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~la 757 (836)
..++.++++...... ..+.+.. .+..|.....+++... .++||||||++++. ++.+| -+|.+.+.+.
T Consensus 84 ~~~~~l~~~~~~~~~-~g~~~~~-~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~------~~~~~----~~Gsva~~vl 151 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHE-IGVGCEA-WIKTGDPKDVICQEVKRVRPDFLVVGSRGLG------RFQKV----FVGTVSAFCV 151 (175)
T ss_dssp HHHHHHHHHHHHHHH-HTCEEEE-EEEESCHHHHHHHHHHHHCCSEEEEEECCCC------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCceEE-EEecCCHHHHHHHHHHHhCCCEEEEeCCCCC------hhhhh----hcCchHHHHH
Confidence 234566666554321 1223222 2333433333333332 57999999999876 77665 6999999999
Q ss_pred ccCCCCCcceEEEEeec
Q 003256 758 SADFAEGMVSVLVIQSV 774 (836)
Q Consensus 758 s~d~~~~~~SvLvvqq~ 774 (836)
.. ++++||||+..
T Consensus 152 ~~----a~~pVlvv~~~ 164 (175)
T 2gm3_A 152 KH----AECPVMTIKRN 164 (175)
T ss_dssp HH----CSSCEEEEECC
T ss_pred hC----CCCCEEEEcCC
Confidence 74 78999999865
No 32
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.74 E-value=2.4e-08 Score=94.31 Aligned_cols=126 Identities=8% Similarity=0.024 Sum_probs=83.8
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeec-CC-ccc---------chhhhhhHHHHHHHHHhhcCCCCC
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLE-EN-LVE---------EEDDKCLDEVVMNDFMASNFGNPN 696 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~-~~-~~~---------~~~e~~~d~~~l~~~~~~~~~~~~ 696 (836)
.++|+++++|+++++.|+++|.++|+..+++++++|+.++ .. ... .+..++..++.++++.++. + ..
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 79 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESV-D-YP 79 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHS-S-SC
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHc-C-CC
Confidence 4699999999999999999999999999999999999843 11 100 0111233456777776654 2 12
Q ss_pred EEEEEEEcCChHHHHHHHHhc-ccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeec
Q 003256 697 VVCRRIDANDSNQLVNAFRSL-VSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSV 774 (836)
Q Consensus 697 v~y~e~~v~~g~~~~~~i~~~-~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~ 774 (836)
+. +..+..|.....+++.. ..++||+|||++ +. ++. .+|...+.+.. .++++||||+..
T Consensus 80 ~~--~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~------~~~------~lgs~~~~vl~----~~~~pVlvv~~~ 139 (141)
T 1jmv_A 80 IS--EKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QD------FWS------KLMSSTRQVMN----TIKIDMLVVPLR 139 (141)
T ss_dssp CC--CEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CC------CHH------HHHHHHHHHHT----TCCSEEEEEECC
T ss_pred ce--EEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cc------hhh------hhcchHHHHHh----cCCCCEEEeeCC
Confidence 21 11122333222333332 267999999999 64 332 26999999995 588999999864
No 33
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.72 E-value=3e-08 Score=107.14 Aligned_cols=146 Identities=7% Similarity=-0.020 Sum_probs=91.2
Q ss_pred cceeEEeecCCCC-------hHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHH
Q 003256 462 ELRILCGIHDEDH-------ISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVI 534 (836)
Q Consensus 462 elriLvcv~~~~~-------~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~ 534 (836)
.-|||+|++.++. ...+++.+..++........++++|+++........-......+.. .....++..+.++
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 234 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLY-NNALRGQHLIAMK 234 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHH-HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHH-HHHHHHHHHHHHH
Confidence 4689999999885 3666666665553321145889999988653321100000000000 1111233444555
Q ss_pred HHhhcCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCC
Q 003256 535 KYAEGSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKR 614 (836)
Q Consensus 535 ~~~~~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg 614 (836)
.+.+..... .++..... ++..+.|++.|++.++||||||.|++++. .+..+|++.++|++++||||.|+..++
T Consensus 235 ~~~~~~~~~-~~~~~v~~---g~~~~~I~~~a~~~~~dLiV~G~~g~~~~---~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 235 ELRQKFSIP-EEKTHVKE---GLPEQVIPQVCEELNAGIVVLGILGRTGL---SAAFLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp HHHHHTTCC-GGGEEEEE---SCHHHHHHHHHHHTTEEEEEEECCSCCST---HHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred HHHHHhCCC-cccEEEec---CCcHHHHHHHHHHhCCCEEEEeccCccCC---ccccccHHHHHHHhhCCCCEEEECCCC
Confidence 554433221 22333332 57899999999999999999999988665 444899999999999999997765555
Q ss_pred C
Q 003256 615 L 615 (836)
Q Consensus 615 ~ 615 (836)
.
T Consensus 308 ~ 308 (319)
T 3olq_A 308 F 308 (319)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.71 E-value=4.5e-08 Score=92.10 Aligned_cols=128 Identities=9% Similarity=0.003 Sum_probs=80.9
Q ss_pred ceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEe-ec-cCCC-ccc-hhcccccccccccCchHHHHHHHHHHhh
Q 003256 463 LRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLV-EL-VGRA-APV-VETYSTQKTKAMANSTDHIMRAVIKYAE 538 (836)
Q Consensus 463 lriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlv-el-~~r~-~p~-~~~~~~~~~~~~~~~~~~i~~af~~~~~ 538 (836)
-|||+|++.++.....++.+..++.. .+..++++|++ +. +... ... -...............++.++.++.++.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEK--LGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLT 82 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT--TCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHH--cCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999998888754 35799999998 63 1000 000 0000000000001112233333322201
Q ss_pred cCCCceeEEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEE
Q 003256 539 GSNDAVTIQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGI 609 (836)
Q Consensus 539 ~~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgI 609 (836)
...+ .++..+. .++..+.|++.|++.++||||||.|++ |+.++|++++||||.|
T Consensus 83 -~~~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~g~------------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 83 -GSTE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACYPS------------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp -SCCC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSCCG------------GGTHHHHHHSSSEEEE
T ss_pred -ccCC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCCCC------------chHHHHHHhCCCceEe
Confidence 1223 4554443 368999999999999999999999843 7899999999999865
No 35
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.71 E-value=2.4e-08 Score=106.71 Aligned_cols=135 Identities=11% Similarity=0.002 Sum_probs=86.6
Q ss_pred cceeEEeecCCCC-------hHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHH
Q 003256 462 ELRILCGIHDEDH-------ISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVI 534 (836)
Q Consensus 462 elriLvcv~~~~~-------~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~ 534 (836)
.-|||+|++.+++ ...+++.+..++... +..++++|+++....... .+.. . . .....++..+.++
T Consensus 134 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~--~~~~-~-~--~~~~~~~~~~~l~ 205 (290)
T 3mt0_A 134 GGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA--KATLHVISAHPSPMLSSA--DPTF-Q-L--SETIEARYREACR 205 (290)
T ss_dssp TCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEC-----------CH-H-H--HHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc--CCeEEEEEEecCcccccc--Cchh-H-H--HHHHHHHHHHHHH
Confidence 4599999999998 778888877776433 568999999885432111 0100 0 0 0011122233333
Q ss_pred HHhhcCCCcee-EEEEEEEcCCcchHHHHHHHHHhcCCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEc
Q 003256 535 KYAEGSNDAVT-IQPFIMISQYETMHESICKLVKDNCITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVD 612 (836)
Q Consensus 535 ~~~~~~~~~v~-v~~~t~vs~~~~m~~~I~~~A~~~~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvd 612 (836)
.+.+.. ++. ++..... ++..+.|++.|++.++||||||.|++++. .+..+||+.++|++++||||.|+.+
T Consensus 206 ~~~~~~--g~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiVmG~~g~~~~---~~~~~Gsv~~~vl~~~~~pVLvv~~ 276 (290)
T 3mt0_A 206 TFQAEY--GFSDEQLHIEE---GPADVLIPRTAQKLDAVVTVIGTVARTGL---SGALIGNTAEVVLDTLESDVLVLKP 276 (290)
T ss_dssp HHHHHH--TCCTTTEEEEE---SCHHHHHHHHHHHHTCSEEEEECCSSCCG---GGCCSCHHHHHHHTTCSSEEEEECC
T ss_pred HHHHHc--CCCcceEEEec---cCHHHHHHHHHHhcCCCEEEECCCCCcCC---cceecchHHHHHHhcCCCCEEEECC
Confidence 343322 221 2222322 58999999999999999999999988665 3348999999999999999976533
No 36
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.67 E-value=8.7e-08 Score=90.10 Aligned_cols=119 Identities=11% Similarity=-0.015 Sum_probs=78.3
Q ss_pred cccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEe-ec---CC------cc-cc---hhhhhhHHHHHHHHHhh--
Q 003256 627 FCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIY-LE---EN------LV-EE---EDDKCLDEVVMNDFMAS-- 690 (836)
Q Consensus 627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~-~~---~~------~~-~~---~~e~~~d~~~l~~~~~~-- 690 (836)
..++|+++++|+++++.|+++|.++|+..+++++++|+. +. .. .. ++ +..++..++.++++ ..
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 81 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKL 81 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHh
Confidence 367999999999999999999999999999999999998 52 10 00 01 11123344666666 44
Q ss_pred cCCCCCEEEEEEEcCChHHHHHHHHhcc-cCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEE
Q 003256 691 NFGNPNVVCRRIDANDSNQLVNAFRSLV-SDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVL 769 (836)
Q Consensus 691 ~~~~~~v~y~e~~v~~g~~~~~~i~~~~-~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvL 769 (836)
....+.+.+. +..|.....+++... .++||||||++++ .+.+.+.. .++++||
T Consensus 82 ~~~~~~~~~~---~~~g~~~~~I~~~a~~~~~dliV~G~~g~-------------------sv~~~vl~----~a~~PVl 135 (138)
T 1q77_A 82 TGSTEIPGVE---YRIGPLSEEVKKFVEGKGYELVVWACYPS-------------------AYLCKVID----GLNLASL 135 (138)
T ss_dssp HSCCCCCCEE---EECSCHHHHHHHHHTTSCCSEEEECSCCG-------------------GGTHHHHH----HSSSEEE
T ss_pred hccCCcceEE---EEcCCHHHHHHHHHHhcCCCEEEEeCCCC-------------------chHHHHHH----hCCCceE
Confidence 1111144433 233433334444332 4799999999854 56677775 4778999
Q ss_pred EEe
Q 003256 770 VIQ 772 (836)
Q Consensus 770 vvq 772 (836)
||+
T Consensus 136 vv~ 138 (138)
T 1q77_A 136 IVK 138 (138)
T ss_dssp ECC
T ss_pred eeC
Confidence 974
No 37
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.60 E-value=5.7e-08 Score=104.73 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=91.0
Q ss_pred CcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc------cc---hhhhhhHHHHHHHHHhhcCC---
Q 003256 626 NFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV------EE---EDDKCLDEVVMNDFMASNFG--- 693 (836)
Q Consensus 626 ~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~------~~---~~e~~~d~~~l~~~~~~~~~--- 693 (836)
...++|+|+.+|++.++.|+++|.++|++.+++|+++|++++.... .. +..++..++.+++.++....
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 96 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASL 96 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3468999999999999999999999999999999999998742210 10 11223334555555543311
Q ss_pred ---CCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEE
Q 003256 694 ---NPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLV 770 (836)
Q Consensus 694 ---~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLv 770 (836)
+..+.+. +..|... +.|.+..+++||||||++++. ++.+| -+|...+.++.. ++++|||
T Consensus 97 ~~~~~~~~~~---~~~g~~~-~~I~~~a~~~DliV~G~~g~~------~~~~~----~~Gs~~~~vl~~----~~~PVlv 158 (309)
T 3cis_A 97 RAGPPTVHSE---IVPAAAV-PTLVDMSKDAVLMVVGCLGSG------RWPGR----LLGSVSSGLLRH----AHCPVVI 158 (309)
T ss_dssp SSCCSCEEEE---EESSCHH-HHHHHHGGGEEEEEEESSCTT------CCTTC----CSCHHHHHHHHH----CSSCEEE
T ss_pred cCCCceEEEE---EecCCHH-HHHHHHhcCCCEEEECCCCCc------ccccc----ccCcHHHHHHHh----CCCCEEE
Confidence 2234432 3334333 344444458999999999875 66555 699999999964 7899999
Q ss_pred Eeecc
Q 003256 771 IQSVR 775 (836)
Q Consensus 771 vqq~~ 775 (836)
|+...
T Consensus 159 v~~~~ 163 (309)
T 3cis_A 159 IHDED 163 (309)
T ss_dssp ECTTC
T ss_pred EcCCc
Confidence 98764
No 38
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.52 E-value=8.5e-08 Score=100.96 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=88.3
Q ss_pred cEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc------------c--------chhhhhhHHHHHHHHH
Q 003256 629 YNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV------------E--------EEDDKCLDEVVMNDFM 688 (836)
Q Consensus 629 ~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~------------~--------~~~e~~~d~~~l~~~~ 688 (836)
++|+++++|++.++.|+++|.++|++.+++++++|+.++.... + .+..++..++.++++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999998742110 0 0111233345666666
Q ss_pred hhcCC-CCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcce
Q 003256 689 ASNFG-NPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVS 767 (836)
Q Consensus 689 ~~~~~-~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~S 767 (836)
..... +-.+.+. +..|.....+++. ..++||+|||++++.. ++.+| -+|...+.++.. ++++
T Consensus 81 ~~~~~~g~~~~~~---~~~g~~~~~I~~~-~~~~dliV~G~~g~~~-----~~~~~----~~Gs~~~~v~~~----a~~P 143 (268)
T 3ab8_A 81 QSALAAGVAVEAV---LEEGVPHEAILRR-ARAADLLVLGRSGEAH-----GDGFG----GLGSTADRVLRA----SPVP 143 (268)
T ss_dssp HHHHHTTCCEEEE---EEEECHHHHHHHH-HTTCSEEEEESSCTTS-----CTTCC----SCCHHHHHHHHH----CSSC
T ss_pred HHHHhCCCCeEEE---EecCCHHHHHHhh-ccCCCEEEEeccCCCc-----ccccc----ccchhHHHHHHh----CCCC
Confidence 54322 2234433 2234333344444 7889999999987520 34443 589999999964 8899
Q ss_pred EEEEeecc
Q 003256 768 VLVIQSVR 775 (836)
Q Consensus 768 vLvvqq~~ 775 (836)
||||+...
T Consensus 144 Vlvv~~~~ 151 (268)
T 3ab8_A 144 VLLAPGEP 151 (268)
T ss_dssp EEEECSSC
T ss_pred EEEECCCC
Confidence 99998653
No 39
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.46 E-value=6e-08 Score=103.73 Aligned_cols=133 Identities=9% Similarity=0.034 Sum_probs=92.6
Q ss_pred cccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcc-------cc---hhhhhhHHHHHHHHHhhcCCCCC
Q 003256 627 FCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLV-------EE---EDDKCLDEVVMNDFMASNFGNPN 696 (836)
Q Consensus 627 ~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~-------~~---~~e~~~d~~~l~~~~~~~~~~~~ 696 (836)
..++|+|+++|++.++.|+++|.++|++.+++|+++|+.++.... .+ +..++..++.++++.+.... ..
T Consensus 21 m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~g 99 (294)
T 3loq_A 21 QSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEA-AG 99 (294)
T ss_dssp TTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred hhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 367999999999999999999999999999999999998753210 11 12233445677777665432 23
Q ss_pred EEEEEEEcC-ChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCCcceEEEEeecc
Q 003256 697 VVCRRIDAN-DSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEGMVSVLVIQSVR 775 (836)
Q Consensus 697 v~y~e~~v~-~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~~~SvLvvqq~~ 775 (836)
+.+....+. .|.. .+.|...+.++||+|||++++. ++.+| -+|...+.++.. ++++||||....
T Consensus 100 ~~~~~~~v~~~g~~-~~~I~a~~~~~DliV~G~~g~~------~~~~~----~~Gs~~~~vl~~----~~~PVlvv~~~~ 164 (294)
T 3loq_A 100 IKAEVIKPFPAGDP-VVEIIKASENYSFIAMGSRGAS------KFKKI----LLGSVSEGVLHD----SKVPVYIFKHDM 164 (294)
T ss_dssp CEEEECSSCCEECH-HHHHHHHHTTSSEEEEECCCCC------HHHHH----HHCCHHHHHHHH----CSSCEEEECCCT
T ss_pred CCcceeEeeccCCh-hHheeeccCCCCEEEEcCCCCc------cccce----eeccHHHHHHhc----CCCCEEEecCcc
Confidence 443320233 3322 3333333578999999999875 54443 589999999964 789999998874
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.50 E-value=0.065 Score=57.89 Aligned_cols=101 Identities=10% Similarity=0.003 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhhccCcchhhhccch---hhHHHHHHHHHHHHHHHHHHHHhhccccccchHH-HHHHHhhccccHHHH
Q 003256 115 STIGGIYFVFINTVKMDKGMIPRTIKK---TYSVSLTVFIVPLLISLLVGHREQYKIPRIHDQG-ISISFVASKCAYPVL 190 (836)
Q Consensus 115 ~~iGl~~llF~~Gle~d~~~l~~~~~~---~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~s-l~lg~~ls~Ts~~vv 190 (836)
....+.+.||..|++++.+++++..++ ........+++-=+++++++..+..... .... ++++++=+.++..+
T Consensus 45 i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~--~~~Glil~~~~P~~~~s~v- 121 (332)
T 3zux_A 45 IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAE--IAVGVILVGCCPGGTASNV- 121 (332)
T ss_dssp HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHSCCCTHHHH-
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChH--HHHHHHHHhcCCchhHHHH-
Confidence 446788999999999999999864443 3332333443322345555555422111 0112 22333223333333
Q ss_pred HHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 003256 191 VDAISELKLLNSELGQLAISSALLHEIVGLLRLL 224 (836)
Q Consensus 191 ~~iL~el~l~~s~~g~l~ls~a~v~Di~~~~ll~ 224 (836)
+..+ .+.+ ..++++...++.+++.+.+-
T Consensus 122 ---~t~~--a~Gd-~~la~~~~~~stll~~~~~P 149 (332)
T 3zux_A 122 ---MTYL--ARGN-VALSVAVTSVSTLTSPLLTP 149 (332)
T ss_dssp ---HHHH--TTCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHH--hCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 3332 2233 25677778888888887766
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.31 E-value=0.14 Score=53.20 Aligned_cols=246 Identities=8% Similarity=0.018 Sum_probs=151.2
Q ss_pred CccceeEEeecCCCChHHHHHHHHHhCCCCCCCceEEEEEEeeccCCCccchhcccccccccccCchHHHHHHHHHHhhc
Q 003256 460 DSELRILCGIHDEDHISGIIHLIKASNPTEMNPICAYVVHLVELVGRAAPVVETYSTQKTKAMANSTDHIMRAVIKYAEG 539 (836)
Q Consensus 460 ~~elriLvcv~~~~~~~~li~L~~~~~~~~~s~~~v~~lhlvel~~r~~p~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 539 (836)
+-.-++||+...|..-.++++++..+...+. .+.+.++.. .++. .. ..++ ++.++.|-+.
T Consensus 18 nWrP~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~p-~~~~-~~--------------l~~q-l~~l~~~l~~ 77 (294)
T 3g40_A 18 TWKANLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLAG-NTDK-EN--------------LLSQ-LPSISEGFQE 77 (294)
T ss_dssp -CCCEEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC----CT-TC--------------HHHH-HHHHHHHHHH
T ss_pred CCCCcEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEcc-CCCc-cH--------------HHHH-HHHHHHHHHh
Confidence 3466899999999999999999999986653 566666631 1111 00 0122 2445555433
Q ss_pred CCCceeEEEEEEEcCCcchHHHHHHHHHhc-----CCcEEEEecCCCCCcccccchhhhHHHHHHhccCCcceEEEEcCC
Q 003256 540 SNDAVTIQPFIMISQYETMHESICKLVKDN-----CITLILLQFIPPNEETEGRAACLHGLNNNVLGYAPCTVGIFVDKR 614 (836)
Q Consensus 540 ~~~~v~v~~~t~vs~~~~m~~~I~~~A~~~-----~adlIi~~~h~~~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg 614 (836)
. ++ ..++.+-...+..+++....+.. +++.|+||+..+ .+ +...+..++.+.. ++--.|.||.+..
T Consensus 78 r--~v--~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~---~e-~~~~y~~~i~~~~-~~~~nVlil~~~~ 148 (294)
T 3g40_A 78 E--GV--FSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPEN---RD-RDEEIREIIRKAS-MYRMGVLLFSKHP 148 (294)
T ss_dssp T--TC--EEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSS---GG-GHHHHHHHHHHHH-HTTCEEEEEECCT
T ss_pred C--Cc--eeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCC---hh-hhHHHHHHHHHHH-HhCceEEEEecCC
Confidence 2 23 44445544567889998888876 679999999754 12 3346778877755 4577787775432
Q ss_pred CCCCCCCCCCCCcccEEEEEcc--------CC--cchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHH
Q 003256 615 LNNCSNSAKPANFCYNVAVFFI--------GG--PDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVM 684 (836)
Q Consensus 615 ~~~~~~~~~~~~~~~~I~v~f~--------Gg--~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l 684 (836)
.. +. ...++|=+=.. || .+-.-++-+|-.+..+.++++.+..+++. |.+++..++++
T Consensus 149 ~~-~f------g~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------e~a~~~a~~~l 215 (294)
T 3g40_A 149 QA-GL------GRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------AIQAQAAENFL 215 (294)
T ss_dssp TT-TT------TTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS------HHHHHHHHHHH
T ss_pred cc-CC------CCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC------HHHHHHHHHHH
Confidence 21 11 11345544422 22 34567888888888889999999999874 45677788999
Q ss_pred HHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccCCCCccccccCCCCCCCCccccccchhhccCCCCC
Q 003256 685 NDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQPFSSRLLEETKPWVEYDELGIIGDMLASADFAEG 764 (836)
Q Consensus 685 ~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~~~~~~~~~Gl~~w~e~~eLG~igd~las~d~~~~ 764 (836)
+++.+..+-... .+ . |. .+-.+++++. .+.||+++|-... |.+-.+-++.=- +
T Consensus 216 ~~Lv~~~Ri~a~-~~-v--v~--~~F~~il~~s-~~ADL~flGl~~~---------------~df~~~~~~~~~-----~ 268 (294)
T 3g40_A 216 QSLAELARIPNV-KM-Q--VL--RENPIKSSKL-PFASLHIFSLDPN---------------PDLDLARHLMEK-----A 268 (294)
T ss_dssp HHHHHHHTCCSC-EE-E--EE--SSCTTTSSSC-CCCSEEEEECCSS---------------CCHHHHHHHHHH-----H
T ss_pred HHHHHHhcCCce-EE-E--ec--CchHHHHhhC-cCCCEEEEcCCCC---------------CcHHHHHHHHHh-----c
Confidence 999987643322 22 2 22 3344666764 7799999998654 345555555542 3
Q ss_pred cceEEEEeec
Q 003256 765 MVSVLVIQSV 774 (836)
Q Consensus 765 ~~SvLvvqq~ 774 (836)
.+|-|.|...
T Consensus 269 ~ssc~f~~ds 278 (294)
T 3g40_A 269 GSSCIFALDS 278 (294)
T ss_dssp TSEEEEEECC
T ss_pred CCeEEEEecC
Confidence 3466666654
No 42
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=71.41 E-value=6.7 Score=40.22 Aligned_cols=92 Identities=16% Similarity=0.268 Sum_probs=54.0
Q ss_pred CcchHHHHHHHHHhhcCCCe--EEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEE-EE----cCChHHH
Q 003256 638 GPDDREAMALVSHMSSNPGV--RITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRR-ID----ANDSNQL 710 (836)
Q Consensus 638 g~ddreAL~~A~rmA~~~~~--~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e-~~----v~~g~~~ 710 (836)
.|.|.+||+.|.|+++. +. +++++.+-++. .++.+++.... +.+++...+ -. --+...+
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------a~~~lr~ala~--GaD~vi~v~~d~~~~~~~~~~~~ 101 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ-----------AAETLRTALAM--GADRAILVVAADDVQQDIEPLAV 101 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG-----------GHHHHHHHHHH--TCSEEEEEECCSSTTCCCCHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------HHHHHHHHHhc--CCCEEEEEecChhhcccCCHHHH
Confidence 78999999999999987 66 89998777531 11223333221 223443332 11 1134455
Q ss_pred HHHHHhc--ccCCcEEEEcccCCC-----CccccccCCCC
Q 003256 711 VNAFRSL--VSDNDLVIVGRQQPF-----SSRLLEETKPW 743 (836)
Q Consensus 711 ~~~i~~~--~~~~DLiivG~~~~~-----~~~~~~Gl~~w 743 (836)
..+|.+. ..+||+|+.|++... -.|.++.+.+|
T Consensus 102 a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 102 AKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 5555554 246999999998732 23444444444
No 43
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=71.35 E-value=9.6 Score=32.99 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=44.2
Q ss_pred chHHHHHHHHHhcCCcEEEEecCCC-CCcccccchhhhHHHHHHhccCCcceEEEEcCC
Q 003256 557 TMHESICKLVKDNCITLILLQFIPP-NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKR 614 (836)
Q Consensus 557 ~m~~~I~~~A~~~~adlIi~~~h~~-~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg 614 (836)
...+.|.+++++++++.||+|.-.+ ||.........+...+++-++ +.||- ++|..
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~-~~DER 94 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVE-LWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEE-EECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEE-EECCC
Confidence 4567899999999999999998877 676554445677888888877 89984 77764
No 44
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=70.63 E-value=6.4 Score=40.44 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=54.3
Q ss_pred CCcchHHHHHHHHHhhcCCCe--EEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEE-EE----cCChHH
Q 003256 637 GGPDDREAMALVSHMSSNPGV--RITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRR-ID----ANDSNQ 709 (836)
Q Consensus 637 Gg~ddreAL~~A~rmA~~~~~--~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e-~~----v~~g~~ 709 (836)
=.|.|.+||+.|.|+++. +. +++++.+-++. .++.+++.... +.+++...+ -. --+...
T Consensus 38 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------a~~~lr~ala~--GaD~vi~v~~d~~~~~~~~~~~ 103 (255)
T 1efv_B 38 MNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ-----------CQETIRTALAM--GADRGIHVEVPPAEAERLGPLQ 103 (255)
T ss_dssp ECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT-----------HHHHHHHHHHH--TCSEEEEEECCHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------HHHHHHHHHhc--CCCEEEEEecChhhcccCCHHH
Confidence 378999999999999987 66 89998877531 11233333221 223443332 10 113344
Q ss_pred HHHHHHhc--ccCCcEEEEcccCCC-----CccccccCCCC
Q 003256 710 LVNAFRSL--VSDNDLVIVGRQQPF-----SSRLLEETKPW 743 (836)
Q Consensus 710 ~~~~i~~~--~~~~DLiivG~~~~~-----~~~~~~Gl~~w 743 (836)
+..+|.+. ..+||+|+.|++... -.|.++.+.+|
T Consensus 104 ~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 104 VARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 55555554 246999999998742 23444444454
No 45
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=69.45 E-value=19 Score=39.99 Aligned_cols=94 Identities=12% Similarity=0.096 Sum_probs=61.2
Q ss_pred cEEEEEccCCcchHHHHHHHHHhhcC-CCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCC-
Q 003256 629 YNVAVFFIGGPDDREAMALVSHMSSN-PGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDAND- 706 (836)
Q Consensus 629 ~~I~v~f~Gg~ddreAL~~A~rmA~~-~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~- 706 (836)
.+|+|.+-||+|.--.|.++.++.+. .+.++.++|+...... +.+.+.++++++.+++. +.+..+.+..
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~-----~s~~~~~~v~~~~~~lg----i~~~v~~~~~~ 84 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA-----NADAWVTHCENVCQQWQ----VPLVVERVQLA 84 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS-----SHHHHHHHHHHHHHHTT----CCEEEECCCCC
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCc-----ccHHHHHHHHHHHHHcC----CcEEEEEecCC
Confidence 58999999999999999999998877 8899999999654221 22345567788887752 2222222221
Q ss_pred --h---HHHH-----HHHHhcccCCcEEEEcccCC
Q 003256 707 --S---NQLV-----NAFRSLVSDNDLVIVGRQQP 731 (836)
Q Consensus 707 --g---~~~~-----~~i~~~~~~~DLiivG~~~~ 731 (836)
+ ++.. ..+.+...++|.++.|.|.+
T Consensus 85 ~~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~d 119 (433)
T 1ni5_A 85 QEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLD 119 (433)
T ss_dssp CSSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccch
Confidence 1 2221 22334445699999998753
No 46
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=68.69 E-value=5.3 Score=41.30 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=50.6
Q ss_pred EccCCcchHHHHHHHHHhhcCCCe--EEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEc---CChH
Q 003256 634 FFIGGPDDREAMALVSHMSSNPGV--RITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDA---NDSN 708 (836)
Q Consensus 634 ~f~Gg~ddreAL~~A~rmA~~~~~--~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v---~~g~ 708 (836)
+..=.|.|.+||+.|.|+++..+. +++++.+-++. .++.+++.... +.+++...+-.. .+..
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~-----------~~~~lr~ala~--GaD~vi~v~d~~~~~~~~~ 98 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR-----------VDESLRKCLAK--GADRAVRVWDDAAEGSDAI 98 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG-----------GHHHHHHHHHT--TCSEEEEECCGGGTTCCHH
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh-----------HHHHHHHHHhc--CCCEEEEEcCcccccCCHH
Confidence 443478999999999999987666 89988776421 11233333221 223443222111 1334
Q ss_pred HHHHHHHhcc--cCCcEEEEcccCC
Q 003256 709 QLVNAFRSLV--SDNDLVIVGRQQP 731 (836)
Q Consensus 709 ~~~~~i~~~~--~~~DLiivG~~~~ 731 (836)
.+..+|.+.. .+||+|+.|++..
T Consensus 99 ~~a~~La~~i~~~~~dlVl~G~~s~ 123 (264)
T 1o97_C 99 VVGRILTEVIKKEAPDMVFAGVQSS 123 (264)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 4555555542 3699999999874
No 47
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=63.40 E-value=30 Score=38.63 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=46.8
Q ss_pred ccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256 628 CYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 628 ~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~ 691 (836)
..+|+|.+-||+|.--.|.++.++.+..+.++.++|+...... .+...+.++++++.+++
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg----~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG----RESEEEMEFVKRFCVER 77 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT----HHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc----cccHHHHHHHHHHHHHc
Confidence 3589999999999999999999998888899999999654220 22345567888888775
No 48
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=60.57 E-value=1.1e+02 Score=32.31 Aligned_cols=95 Identities=8% Similarity=0.035 Sum_probs=52.0
Q ss_pred HHHHhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 003256 303 AMLGIVIPAGPPLGSALVEKSEAILSNFFLPFFYIHVGQQIDIYSINN-WRAFAALELIIMAAYIGKVVASILATTCFRT 381 (836)
Q Consensus 303 f~aGl~i~~~~~~~~~l~~kl~~~~~~~flPlFF~~~Gl~idl~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~ 381 (836)
.++|..+|+.... ++.. ....+.+-+...|+++++..+.+ ...+.......+.-++...+.++..++.++.
T Consensus 28 ~~lg~~~P~~~~~-------~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l 99 (332)
T 3zux_A 28 AAAAFFAPDTFKW-------AGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL 99 (332)
T ss_dssp HHHHHHCGGGTGG-------GGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcchhhhh-------hHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3667777764221 1222 23455666777899999988752 1233333344445566677777777777776
Q ss_pred ChHHHHHHHHH-hhhhhhHHHHHHh
Q 003256 382 SFRNALLFSCF-VNIKGVSELVTFL 405 (836)
Q Consensus 382 ~~real~lg~~-m~~rG~v~l~~~~ 405 (836)
+...+..+-+. ..|-|..+.++..
T Consensus 100 ~~~~~~Glil~~~~P~~~~s~v~t~ 124 (332)
T 3zux_A 100 PAEIAVGVILVGCCPGGTASNVMTY 124 (332)
T ss_dssp CHHHHHHHHHHHHSCCCTHHHHHHH
T ss_pred ChHHHHHHHHHhcCCchhHHHHHHH
Confidence 65433332222 2355555554433
No 49
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=58.83 E-value=41 Score=35.38 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=44.3
Q ss_pred cEEEEEccCCcchHHHHHHHHHhhcCCCeE-EEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256 629 YNVAVFFIGGPDDREAMALVSHMSSNPGVR-ITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 629 ~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~-Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~ 691 (836)
.+|+|.+-||+|+--.+.++.+..+..+.+ +.++|+..... .+...+.++++++.+++
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r-----~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR-----ESAERDEEFCKEFAKER 83 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS-----THHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC-----cccHHHHHHHHHHHHHc
Confidence 589999999999999999999888777888 99998864322 12334556777777765
No 50
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=53.19 E-value=21 Score=37.97 Aligned_cols=56 Identities=7% Similarity=-0.015 Sum_probs=40.9
Q ss_pred cEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256 629 YNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 629 ~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~ 691 (836)
.+++|.|-||+|+--.|.++.+.....+.++.++++-..... ....++++++.+++
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~-------~et~~~v~~~~~~~ 102 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF-------QEMYRFRDQMVEEM 102 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC-------HHHHHHHHHHHHTT
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC-------HHHHHHHHHHHHHc
Confidence 378999999999999999999887655567778887543221 22346778887765
No 51
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=50.71 E-value=72 Score=31.15 Aligned_cols=52 Identities=8% Similarity=-0.109 Sum_probs=37.3
Q ss_pred cEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256 629 YNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 629 ~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~ 691 (836)
.+|+|.|-||+|+--.|.++.+.. -++.++++..... ...+.++++++.+++
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~-------~~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYL-------FPETYRFIDELTDKL 96 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCB-------CHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCC-------CHHHHHHHHHHHHHh
Confidence 389999999999999998888874 2467777765322 122356788887775
No 52
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=45.92 E-value=33 Score=31.58 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=43.6
Q ss_pred cchHHHHHHHHHhcCCcEEEEecCCC-CCcccccchhhhHHHHHHhccCCcceEEEEcCCC
Q 003256 556 ETMHESICKLVKDNCITLILLQFIPP-NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKRL 615 (836)
Q Consensus 556 ~~m~~~I~~~A~~~~adlIi~~~h~~-~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~ 615 (836)
....+.|.+++++.+++.||+|.-.+ ||.........+...+++-++-+.||- ++|...
T Consensus 39 ~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~-~~DERl 98 (138)
T 1nu0_A 39 TPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVK-LHDERL 98 (138)
T ss_dssp EECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEE-EEEEEC
T ss_pred chHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEE-EEcCCc
Confidence 34568999999999999999998776 666443334556777777666688984 687643
No 53
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=40.12 E-value=44 Score=34.06 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=39.2
Q ss_pred EEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhc
Q 003256 630 NVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASN 691 (836)
Q Consensus 630 ~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~ 691 (836)
+++|.|-||+|+--.|.++.+.... +.++.++++-..... ..+.++++++.+++
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~~-------~et~~~v~~~~~~~ 96 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHHF-------PQTLTLKNEIEKKY 96 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCBC-------HHHHHHHHHHHHHH
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCCC-------HHHHHHHHHHHHHh
Confidence 6899999999999999999888765 556777877543221 22346777777765
No 54
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=38.43 E-value=62 Score=33.90 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=54.8
Q ss_pred cEEEEEccCCcchHHHHHHHHHhh-c-----------------CCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhh
Q 003256 629 YNVAVFFIGGPDDREAMALVSHMS-S-----------------NPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMAS 690 (836)
Q Consensus 629 ~~I~v~f~Gg~ddreAL~~A~rmA-~-----------------~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~ 690 (836)
.+|+|.|-||+|+--.|.++.+.. + .++.++.++++..+. +-....++++++.++
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~-------~fpet~~fv~~~~~~ 126 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE-------TFPTLENFVLETSER 126 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT-------CCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC-------CCHHHHHHHHHHHHH
Confidence 479999999999999998888763 1 124567778775432 233445678888776
Q ss_pred cCCCCCEEEEEEEcC-----ChHHHHHHHHhcccCCcEEEEcccCCC
Q 003256 691 NFGNPNVVCRRIDAN-----DSNQLVNAFRSLVSDNDLVIVGRQQPF 732 (836)
Q Consensus 691 ~~~~~~v~y~e~~v~-----~g~~~~~~i~~~~~~~DLiivG~~~~~ 732 (836)
+. +........ .-.+............+.+++|.++..
T Consensus 127 yg----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 127 YC----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp TT----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred cC----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 51 222221111 111222222222345789999998763
No 55
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=36.76 E-value=2e+02 Score=27.78 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=27.9
Q ss_pred cEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEEEEeec
Q 003256 629 YNVAVFFIGGPDDREAMALVSHMSSNPGVRITLSRIYLE 667 (836)
Q Consensus 629 ~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvvrv~~~ 667 (836)
.++++.+-||.|.--++.++.+ .+.++..+++...
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~~ 41 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINFG 41 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEECS
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeCC
Confidence 5899999999999888877654 3678888888654
No 56
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=33.80 E-value=19 Score=24.50 Aligned_cols=25 Identities=8% Similarity=0.111 Sum_probs=22.4
Q ss_pred HHHHHHhhccccHHHHHHHHHhccc
Q 003256 175 GISISFVASKCAYPVLVDAISELKL 199 (836)
Q Consensus 175 sl~lg~~ls~Ts~~vv~~iL~el~l 199 (836)
++++|+++|.|++..+..++++++.
T Consensus 6 ~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 6 NLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHccCCChHHHHHHHHHcCC
Confidence 4789999999999999999999874
No 57
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=25.70 E-value=2e+02 Score=30.41 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=68.2
Q ss_pred CcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEE
Q 003256 583 EETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLS 662 (836)
Q Consensus 583 g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvv 662 (836)
|..+.+-.....+.+.|-+....||+| .-+... ...||.+.++.+++|+++.+.. +..+
T Consensus 188 GslenR~r~~~eiv~avr~~v~~pv~v-Rls~~~-----------------~~~~g~~~~~~~~la~~L~~~G---vd~i 246 (340)
T 3gr7_A 188 GSPENRYRFLGEVIDAVREVWDGPLFV-RISASD-----------------YHPDGLTAKDYVPYAKRMKEQG---VDLV 246 (340)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSCEEE-EEESCC-----------------CSTTSCCGGGHHHHHHHHHHTT---CCEE
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCceEE-Eecccc-----------------ccCCCCCHHHHHHHHHHHHHcC---CCEE
Confidence 444444445677888887777888876 212111 0135777889999999998873 3345
Q ss_pred EEeecCCcccc-hhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccC
Q 003256 663 RIYLEENLVEE-EDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQ 730 (836)
Q Consensus 663 rv~~~~~~~~~-~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~ 730 (836)
++......... ......+.++++++++.. +..|...- -+.+.++..+.+++ ...|+|.+||.-
T Consensus 247 ~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~iPVi~~G-gI~s~e~a~~~L~~--G~aD~V~iGR~~ 310 (340)
T 3gr7_A 247 DVSSGAIVPARMNVYPGYQVPFAELIRREA--DIPTGAVG-LITSGWQAEEILQN--GRADLVFLGREL 310 (340)
T ss_dssp EEECCCSSCCCCCCCTTTTHHHHHHHHHHT--TCCEEEES-SCCCHHHHHHHHHT--TSCSEEEECHHH
T ss_pred EEecCCccCCCCCCCccccHHHHHHHHHHc--CCcEEeeC-CCCCHHHHHHHHHC--CCeeEEEecHHH
Confidence 55432111100 001112345777787764 23333211 12345555555553 458999999974
No 58
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=24.51 E-value=1.1e+02 Score=28.23 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=43.3
Q ss_pred CcchHHHHHHHHHhcCCcEEEEecCCC-CCcccccchhhhHHHHHHhccCCcceEEEEcCC
Q 003256 555 YETMHESICKLVKDNCITLILLQFIPP-NEETEGRAACLHGLNNNVLGYAPCTVGIFVDKR 614 (836)
Q Consensus 555 ~~~m~~~I~~~A~~~~adlIi~~~h~~-~g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg 614 (836)
.....+.|.+++++.+++.|++|.-.. +|.........+.+...+.++.++||- ++|..
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~-~vDEr 99 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVV-LWDER 99 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEE-EECCS
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEE-EecCC
Confidence 356789999999999999999997655 565433323346777777777789985 57654
No 59
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=23.86 E-value=1.1e+02 Score=30.19 Aligned_cols=80 Identities=6% Similarity=0.031 Sum_probs=47.6
Q ss_pred CcchHHHHHHHHHhhcCCCeEEEEEEEeecCCcccchhhhhhHHHHHHHHHhhcCCCCCEEEEEEEc---CChHHHHHHH
Q 003256 638 GPDDREAMALVSHMSSNPGVRITLSRIYLEENLVEEEDDKCLDEVVMNDFMASNFGNPNVVCRRIDA---NDSNQLVNAF 714 (836)
Q Consensus 638 g~ddreAL~~A~rmA~~~~~~Ltvvrv~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v---~~g~~~~~~i 714 (836)
.+.+.|+|..|+++++..+.+++++-+-++.+ + .+++... + +.+++...+-.. -+.+....+|
T Consensus 18 ~~~s~ell~~A~~La~~~g~~v~av~~G~~~~--------~----~~~~~~~-~-Gad~v~~v~~~~~~~~~~~~~a~~l 83 (217)
T 3ih5_A 18 ADVSLELLTKGRSLANELNCQLEAVVAGTGLK--------E----IEKQILP-Y-GVDKLHVFDAEGLYPYTSLPHTSIL 83 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCEEEEEEESCCT--------T----THHHHGG-G-TCSEEEEEECGGGSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEEECCCHH--------H----HHHHHHh-c-CCCEEEEecCcccccCCHHHHHHHH
Confidence 36789999999999998888999887764311 1 1122222 2 233443332111 1234455555
Q ss_pred Hhcc--cCCcEEEEcccCC
Q 003256 715 RSLV--SDNDLVIVGRQQP 731 (836)
Q Consensus 715 ~~~~--~~~DLiivG~~~~ 731 (836)
.++. .++|+|++|.+..
T Consensus 84 ~~~i~~~~p~~Vl~g~t~~ 102 (217)
T 3ih5_A 84 VNLFKEEQPQICLMGATVI 102 (217)
T ss_dssp HHHHHHHCCSEEEEECSHH
T ss_pred HHHHHhcCCCEEEEeCCcc
Confidence 5553 4589999998753
No 60
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=23.67 E-value=1.6 Score=29.86 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=23.1
Q ss_pred HHHHHHHHhchhHHHHHHHHHhhccCC
Q 003256 286 VMAVACDSMRVNYTIGAAMLGIVIPAG 312 (836)
Q Consensus 286 ~~~~iae~~G~~~~lGaf~aGl~i~~~ 312 (836)
.++.++|.+++|++++.+.+|+.+.+.
T Consensus 5 ~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 5 MAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 456778999999999999999998764
No 61
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=20.95 E-value=2.5e+02 Score=29.48 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=64.2
Q ss_pred CcccccchhhhHHHHHHhccCCcceEEEEcCCCCCCCCCCCCCCcccEEEEEccCCcchHHHHHHHHHhhcCCCeEEEEE
Q 003256 583 EETEGRAACLHGLNNNVLGYAPCTVGIFVDKRLNNCSNSAKPANFCYNVAVFFIGGPDDREAMALVSHMSSNPGVRITLS 662 (836)
Q Consensus 583 g~~~~~~~~~gsv~~~Vl~~ApCsVgIlvdrg~~~~~~~~~~~~~~~~I~v~f~Gg~ddreAL~~A~rmA~~~~~~Ltvv 662 (836)
|..+.+-.....+.+.|-+....||++ .-+... .+.||-+.++++++|+++.+.. +..+
T Consensus 188 Gslenr~r~~~eiv~avr~~v~~pv~v-ris~~~-----------------~~~~g~~~~~~~~~a~~l~~~G---vd~i 246 (338)
T 1z41_A 188 GSPENRYRFLREIIDEVKQVWDGPLFV-RVSASD-----------------YTDKGLDIADHIGFAKWMKEQG---VDLI 246 (338)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSCEEE-EEECCC-----------------CSTTSCCHHHHHHHHHHHHHTT---CCEE
T ss_pred cchhhhHHHHHHHHHHHHHHcCCcEEE-EecCcc-----------------cCCCCCCHHHHHHHHHHHHHcC---CCEE
Confidence 333333345567777777766888875 212111 0125777889999999998763 3444
Q ss_pred EEeecCCcccc-hhhhhhHHHHHHHHHhhcCCCCCEEEEEEEcCChHHHHHHHHhcccCCcEEEEcccC
Q 003256 663 RIYLEENLVEE-EDDKCLDEVVMNDFMASNFGNPNVVCRRIDANDSNQLVNAFRSLVSDNDLVIVGRQQ 730 (836)
Q Consensus 663 rv~~~~~~~~~-~~e~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~g~~~~~~i~~~~~~~DLiivG~~~ 730 (836)
++......... ......+.++++++++.. +..+.-.. -+.+.++..+.+++ ...|+|.+||.-
T Consensus 247 ~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~G-gi~s~~~a~~~l~~--G~aD~V~iGR~~ 310 (338)
T 1z41_A 247 DCSSGALVHADINVFPGYQVSFAEKIREQA--DMATGAVG-MITDGSMAEEILQN--GRADLIFIGREL 310 (338)
T ss_dssp EEECCCSSCCCCCCCTTTTHHHHHHHHHHH--CCEEEECS-SCCSHHHHHHHHHT--TSCSEEEECHHH
T ss_pred EEecCccccCCCCCCccchHHHHHHHHHHC--CCCEEEEC-CCCCHHHHHHHHHc--CCceEEeecHHH
Confidence 44432111000 001112335677777654 12222111 12344555555553 458999999974
Done!